RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254780720|ref|YP_003065133.1| Ferroxidase [Candidatus
Liberibacter asiaticus str. psy62]
(164 letters)
>3bvf_A Ferritin; iron storage, cytoplasm, metal-binding, oxidoreductase;
1.50A {Helicobacter pylori} PDB: 3bve_A 3bvi_A 3bvk_A
3bvl_A 3egm_A
Length = 181
Score = 132 bits (334), Expect = 3e-32
Identities = 60/156 (38%), Positives = 88/156 (56%)
Query: 9 LNELMNMEYVAQYHYMQAAAWAASHNLDGCCNFLLKHAMEEHSHVIRIFKHLTDLGVEAK 68
LNE +N E + YM ++W +H+LDG FL HA EE+ H ++ L + V +
Sbjct: 24 LNEQVNKEMNSSNLYMSMSSWCYTHSLDGAGLFLFDHAAEEYEHAKKLIIFLNENNVPVQ 83
Query: 69 FSSIEAPVISANDVEGLFSLMYEHENKVTIAYDDAIETILAEKDHQTFQFLQWFVKEQHE 128
+SI AP + +F YEHE ++ + ++ ++ + KDH TF FLQW+V EQHE
Sbjct: 84 LTSISAPEHKFEGLTQIFQKAYEHEQHISESINNIVDHAIKSKDHATFNFLQWYVAEQHE 143
Query: 129 EMALFRRILDKIRLIGSGPHSRYMFDLEIEKIANKS 164
E LF+ ILDKI LIG+ H Y+ D ++ IA
Sbjct: 144 EEVLFKDILDKIELIGNENHGLYLADQYVKGIAKSR 179
>2jd6_0 Ferritin homolog, ferritin; metal transport, iron, pores, archaeon,
entry channels, thermostability, hyperthermophIle,
ferroxidase center; 2.75A {Pyrococcus furiosus} PDB:
2jd7_0 2jd8_0
Length = 174
Score = 122 bits (308), Expect = 4e-29
Identities = 45/151 (29%), Positives = 70/151 (46%)
Query: 9 LNELMNMEYVAQYHYMQAAAWAASHNLDGCCNFLLKHAMEEHSHVIRIFKHLTDLGVEAK 68
LN+ +N E + Y Y AA+ L+G N++ A EE H +R + ++ D +
Sbjct: 10 LNDQLNRELYSAYLYFAMAAYFEDLGLEGFANWMKAQAEEEIGHALRFYNYIYDRNGRVE 69
Query: 69 FSSIEAPVISANDVEGLFSLMYEHENKVTIAYDDAIETILAEKDHQTFQFLQWFVKEQHE 128
I P F YEHE ++ + + EKD+ T FL+WF+ EQ E
Sbjct: 70 LDEIPKPPKEWESPLKAFEAAYEHEKFISKSIYELAALAEEEKDYSTRAFLEWFINEQVE 129
Query: 129 EMALFRRILDKIRLIGSGPHSRYMFDLEIEK 159
E A ++ILDK++ P +M D E+
Sbjct: 130 EEASVKKILDKLKFAKDSPQILFMLDKELSA 160
>1eum_A Ferritin 1; ECFTNA, metal binding protein; 2.05A {Escherichia coli}
SCOP: a.25.1.1
Length = 165
Score = 119 bits (300), Expect = 3e-28
Identities = 56/156 (35%), Positives = 89/156 (57%)
Query: 9 LNELMNMEYVAQYHYMQAAAWAASHNLDGCCNFLLKHAMEEHSHVIRIFKHLTDLGVEAK 68
LNE MN+E + Y Q +AW + H +G FL +HA EE +H+ R+F +LTD G +
Sbjct: 10 LNEQMNLELYSSLLYQQMSAWCSYHTFEGAAAFLRRHAQEEMTHMQRLFDYLTDTGNLPR 69
Query: 69 FSSIEAPVISANDVEGLFSLMYEHENKVTIAYDDAIETILAEKDHQTFQFLQWFVKEQHE 128
+++E+P + ++ LF Y+HE +T ++ + +D+ TF FLQW+V EQHE
Sbjct: 70 INTVESPFAEYSSLDELFQETYKHEQLITQKINELAHAAMTNQDYPTFNFLQWYVSEQHE 129
Query: 129 EMALFRRILDKIRLIGSGPHSRYMFDLEIEKIANKS 164
E LF+ I+DK+ L G Y D E+ + ++
Sbjct: 130 EEKLFKSIIDKLSLAGKSGEGLYFIDKELSTLDTQN 165
>3e6s_A Ferritin; iron storage, ferroxidase, oxidoreductase; 1.95A
{Pseudo-nitzschia multiseries} PDB: 3e6r_A
Length = 168
Score = 118 bits (296), Expect = 8e-28
Identities = 31/152 (20%), Positives = 55/152 (36%), Gaps = 2/152 (1%)
Query: 9 LNELMNMEYVAQYHYMQAAAWAASHNLDGCCNFLLKHAMEEHSHVIRIFKHLTDLGVEAK 68
N + E+ A Y+ A+ W ++ +G ++L + EE H + + +
Sbjct: 9 FNRQVTQEFTASQVYLSASIWFDQNDWEGMAAYMLAESAEEREHGLGFVDFANKRNIPIE 68
Query: 69 FSSIEAPVISA--NDVEGLFSLMYEHENKVTIAYDDAIETILAEKDHQTFQFLQWFVKEQ 126
++ APV A + E ++ + E E T + + E D FL F +Q
Sbjct: 69 LQAVPAPVSCAEWSSPEDVWQSILELEQANTRSLLNLAEAASTCHDFAVMAFLNPFHLQQ 128
Query: 127 HEEMALFRRILDKIRLIGSGPHSRYMFDLEIE 158
E IL K+ P D+
Sbjct: 129 VNEEDKIGSILAKVTDENRTPGLLRSLDVVSF 160
>1krq_A Ferritin; H-chain like four-helix bundle, metal binding protein;
2.70A {Campylobacter jejuni} SCOP: a.25.1.1
Length = 167
Score = 118 bits (296), Expect = 9e-28
Identities = 58/153 (37%), Positives = 86/153 (56%)
Query: 9 LNELMNMEYVAQYHYMQAAAWAASHNLDGCCNFLLKHAMEEHSHVIRIFKHLTDLGVEAK 68
LNE +N E A Y+ ++W ++LDG FL HA EE H ++ +L + +
Sbjct: 10 LNEQINKEMYAANLYLSMSSWCYENSLDGAGAFLFAHASEESDHAKKLITYLNETDSHVE 69
Query: 69 FSSIEAPVISANDVEGLFSLMYEHENKVTIAYDDAIETILAEKDHQTFQFLQWFVKEQHE 128
++ P + + +F YEHE +T + + +E +L KD+ TF FLQW+V EQHE
Sbjct: 70 LQEVKQPEQNFKSLLDVFEKTYEHEQFITKSINTLVEHMLTHKDYSTFNFLQWYVSEQHE 129
Query: 129 EMALFRRILDKIRLIGSGPHSRYMFDLEIEKIA 161
E ALFR I+DKI+LIG + Y+ D I+ IA
Sbjct: 130 EEALFRGIVDKIKLIGEHGNGLYLADQYIKNIA 162
>1vlg_A Ferritin; TM1128, structural genomics, JCSG, protein structure
initiative, PSI, joint center for structural genomics;
2.00A {Thermotoga maritima MSB8} SCOP: a.25.1.1 PDB:
1z4a_A*
Length = 176
Score = 113 bits (284), Expect = 2e-26
Identities = 43/151 (28%), Positives = 74/151 (49%)
Query: 9 LNELMNMEYVAQYHYMQAAAWAASHNLDGCCNFLLKHAMEEHSHVIRIFKHLTDLGVEAK 68
LN+ +N E + Y Y+ A + + G +++ K A EE +H ++ ++++ + G +
Sbjct: 24 LNDQLNREIYSSYLYLSMATYFDAEGFKGFAHWMKKQAQEELTHAMKFYEYIYERGGRVE 83
Query: 69 FSSIEAPVISANDVEGLFSLMYEHENKVTIAYDDAIETILAEKDHQTFQFLQWFVKEQHE 128
+IE P + N ++ F +HE VT + + +E EKDH T FL+WFV EQ E
Sbjct: 84 LEAIEKPPSNWNGIKDAFEAALKHEEFVTQSIYNILELASEEKDHATVSFLKWFVDEQVE 143
Query: 129 EMALFRRILDKIRLIGSGPHSRYMFDLEIEK 159
E R ILD + + D + +
Sbjct: 144 EEDQVREILDLLEKANGQMSVIFQLDRYLGQ 174
>1s3q_A Ferritin; ferroxidase, four helix bundle, iron storage, metal
binding protein; 2.10A {Archaeoglobus fulgidus} SCOP:
a.25.1.1 PDB: 1sq3_A
Length = 173
Score = 112 bits (280), Expect = 6e-26
Identities = 49/149 (32%), Positives = 76/149 (51%)
Query: 9 LNELMNMEYVAQYHYMQAAAWAASHNLDGCCNFLLKHAMEEHSHVIRIFKHLTDLGVEAK 68
LN +N E + Y Y+ A++ S L G N++ EE H +++F +++ G K
Sbjct: 12 LNRQINAEIYSAYLYLSMASYFDSIGLKGFSNWMRVQWQEELMHAMKMFDFVSERGGRVK 71
Query: 69 FSSIEAPVISANDVEGLFSLMYEHENKVTIAYDDAIETILAEKDHQTFQFLQWFVKEQHE 128
++E P + F +YEHE VT + +E + EKD T+ FLQW+V EQ E
Sbjct: 72 LYAVEEPPSEWDSPLAAFEHVYEHEVNVTKRIHELVEMAMQEKDFATYNFLQWYVAEQVE 131
Query: 129 EMALFRRILDKIRLIGSGPHSRYMFDLEI 157
E A I++K+RLIG + D E+
Sbjct: 132 EEASALDIVEKLRLIGEDKRALLFLDKEL 160
>3a68_A Sferh-4, ferritin-4, chloroplastic; 4-helix bundle, iron storage,
CAGE-like protein, plant, iron, metal-binding,
oxidoreductase, plastid; 1.80A {Glycine max} PDB: 3a9q_A
Length = 212
Score = 110 bits (277), Expect = 1e-25
Identities = 34/159 (21%), Positives = 58/159 (36%), Gaps = 9/159 (5%)
Query: 9 LNELMNMEYVAQYHYMQAAAWAASH--NLDGCCNFLLKHAMEEHSHVIRIFKHLTDLGVE 66
+NE +N+EY Y Y A+ L G F + + EE H ++ ++ G +
Sbjct: 49 VNEQINVEYNVSYVYHAMFAYFDRDNVALRGLAKFFKESSEEEREHAEKLMEYQNKRGGK 108
Query: 67 AKFSSIEAPV-----ISANDVEGLFSLMYEHENKVTIAYDDAIETILAEKDHQTFQFLQW 121
K SI P+ D L E + D Q F++
Sbjct: 109 VKLQSIVMPLSDFDHADKGDALHAMELALSLEKLTNEKLLNLHSVATKNGDVQLADFVET 168
Query: 122 -FVKEQHEEMALFRRILDKIRLIGSGPHSRYMFDLEIEK 159
++ EQ E + + ++R +G G H + FD +
Sbjct: 169 EYLGEQVEAIKRISEYVAQLRRVGKG-HGVWHFDQMLLH 206
>3ka8_A Ferritin, middle subunit; iron storage, DIIRON, iron,
metal-binding, oxidoreductase; 1.35A {Rana catesbeiana}
PDB: 3ka9_A 3ka3_A 1mfr_A 3ka4_A 3ka6_A 1bg7_A
Length = 176
Score = 96.6 bits (240), Expect = 2e-21
Identities = 31/160 (19%), Positives = 58/160 (36%), Gaps = 6/160 (3%)
Query: 9 LNELMNMEYVAQYHYMQAAAWAAS--HNLDGCCNFLLKHAMEEHSHVIRIFKHLTDLGVE 66
+N ++N+E A Y Y A+ L F +H+ EE H + K+ G
Sbjct: 17 VNRMLNLELYASYTYSSMYAFFDRDDVALHNVAEFFKEHSHEEREHAEKFMKYQNKRGGR 76
Query: 67 AKFSSIEAPVISA-NDVEGLFSLMYEHENKVTIAYDDAIETILAEKDHQTFQFLQ-WFVK 124
I+ P + + E V A D + + D FL+ +++
Sbjct: 77 VVLQDIKKPERDEWGNTLEAMQAALQLEKTVNQALLDLHKLATDKVDPHLCDFLESEYLE 136
Query: 125 EQHEEMALFRRILDKIRLIGSGP--HSRYMFDLEIEKIAN 162
EQ + + + ++ +G Y+FD K ++
Sbjct: 137 EQVKHIKRIGDFITNLKRLGLPENGMGEYLFDKHSVKESS 176
>3kxu_A Ferritin; iron storage protein, disorder, iron, metal binding
protein; 1.85A {Homo sapiens} PDB: 3hx2_A 3hx5_A 3hx7_A
Length = 191
Score = 91.2 bits (226), Expect = 9e-20
Identities = 31/152 (20%), Positives = 52/152 (34%), Gaps = 6/152 (3%)
Query: 9 LNELMNMEYVAQYHYMQAAAWAASHN--LDGCCNFLLKHAMEEHSHVIRIFKHLTDLGVE 66
+N L+N+ A Y Y+ + + L+G +F + A E+ R+ K G
Sbjct: 17 VNSLVNLYLQASYTYLSLGFYFDRDDVALEGVSHFFRELAEEKREGYERLLKMQNQRGGR 76
Query: 67 AKFSSIEAPVISA-NDVEGLFSLMYEHENKVTIAYDDAIETILAEKDHQTFQFLQW-FVK 124
A F I+ P E K+ A D A D FL+ F+
Sbjct: 77 ALFQDIKKPAEDEWGKTPDAMKAAMALEKKLNQALLDLHALGSARTDPHLCDFLETHFLD 136
Query: 125 EQHEEMALFRRILDKIRLIGSGPHS--RYMFD 154
E+ + + L + +G Y+
Sbjct: 137 EEVKLIKKMGDHLTNLHRLGGPEAGLGEYLSS 168
>3fvb_A Bacterioferritin; niaid, ssgcid, decode, structural genomics,
seattle structural genomics center for infectious
disease; HET: HEM; 1.81A {Brucella melitensis biovar
ABORTUS2308}
Length = 182
Score = 91.2 bits (226), Expect = 9e-20
Identities = 21/136 (15%), Positives = 45/136 (33%), Gaps = 1/136 (0%)
Query: 9 LNELMNMEYVAQYHYMQAAAWAASHNLDGCCNFLLKHAMEEHSHVIRIFKHLTDLGVEAK 68
LNE + +E A Y + ++EE H ++ + L
Sbjct: 32 LNEALFLELGAVNQYWLHYRLLNDWGYTRLAKKEREESIEEMHHADKLIDRIIFLEGFPN 91
Query: 69 FSSIEAPVISANDVEGLFSLMYEHENKVTIAYDDAIETILAEKDHQTFQFLQWFVKEQHE 128
++ I +V+ + + E +Y ++ E D+ + Q + ++
Sbjct: 92 LQTVSPLRIG-QNVKEVLEADLKGEYDARASYKESREICDKLGDYVSKQLFDELLADEEG 150
Query: 129 EMALFRRILDKIRLIG 144
+ LD + IG
Sbjct: 151 HIDFLETQLDLLAKIG 166
>1nfv_A Bacterioferritin; 24 subunits in the active molecule, DIIRON
centre, HAEM Fe-coproporphyrin III cofactor; HET: FEC;
1.95A {Desulfovibrio desulfuricans} SCOP: a.25.1.1 PDB:
1nf6_A* 1nf4_A*
Length = 179
Score = 87.5 bits (216), Expect = 2e-18
Identities = 24/136 (17%), Positives = 49/136 (36%), Gaps = 1/136 (0%)
Query: 9 LNELMNMEYVAQYHYMQAAAWAASHNLDGCCNFLLKHAMEEHSHVIRIFKHLTDLGVEAK 68
LN+ ME A + YM + + A++E H + + +LG E
Sbjct: 16 LNKARAMELHAIHQYMNQHYSLDDMDYGELAANMKLIAIDEMRHAENFAERIKELGGEPT 75
Query: 69 FSSIEAPVISANDVEGLFSLMYEHENKVTIAYDDAIETILAEKDHQTFQFLQWFVKEQHE 128
V V ++ + E+ AY ++ + D T + + ++E+
Sbjct: 76 TQKEGKVVTG-QAVPVIYESDADQEDATIEAYSQFLKVCKEQGDIVTARLFERIIEEEQA 134
Query: 129 EMALFRRILDKIRLIG 144
+ + I I+ +G
Sbjct: 135 HLTYYENIGSHIKNLG 150
Score = 25.1 bits (54), Expect = 8.2
Identities = 6/54 (11%), Positives = 12/54 (22%)
Query: 8 VLNELMNMEYVAQYHYMQAAAWAASHNLDGCCNFLLKHAMEEHSHVIRIFKHLT 61
+ + E Y Q + EE +H+ +
Sbjct: 91 IYESDADQEDATIEAYSQFLKVCKEQGDIVTARLFERIIEEEQAHLTYYENIGS 144
>1z6o_A Ferritin light chain; metal binding protein, iron storage; 1.91A
{Trichoplusia NI} SCOP: a.25.1.1
Length = 212
Score = 84.3 bits (208), Expect = 1e-17
Identities = 28/170 (16%), Positives = 60/170 (35%), Gaps = 19/170 (11%)
Query: 9 LNELMNMEYVAQYHYMQAAAWAASH--NLDGCCNFLLKHAMEEHSHVIRIFKHLTDLGVE 66
L + Y Y+ +AA+ ++ N G K + E S I I KH+T G +
Sbjct: 41 LQAYAKLHLERSYDYLLSAAYFNNYQTNRAGFSKLFKKLSDEAWSKTIDIIKHVTKRGDK 100
Query: 67 AKFSSIEAP------VISANDVEGLFSLMYEHENKVTIA----YDDAIETILAEKDHQTF 116
F + N + + + ++ + +A D +
Sbjct: 101 MNFDQHSTMKTERKNYTAENHELEALAKALDTQKELAERAFYIHREATRNSQHLHDPEIA 160
Query: 117 QFLQW-FVKEQHEEMALFRRILDKIRLIGSGPHSR------YMFDLEIEK 159
Q+L+ F+++ E++ ++ + + Y+FD ++K
Sbjct: 161 QYLEEEFIEDHAEKIRTLAGHTSDLKKFITANNGHDLSLALYVFDEYLQK 210
>2wtl_A Bacterioferritin, BFR; metal binding protein, bacterioferritin A,
heme, iron, biliverdin, iron storage, metal-binding;
HET: UNL; 2.59A {Mycobacterium tuberculosis} PDB:
3bkn_A*
Length = 173
Score = 83.9 bits (207), Expect = 2e-17
Identities = 22/136 (16%), Positives = 41/136 (30%), Gaps = 1/136 (0%)
Query: 9 LNELMNMEYVAQYHYMQAAAWAASHNLDGCCNFLLKHAMEEHSHVIRIFKHLTDLGVEAK 68
LNE + E A Y + + + +E H I + L
Sbjct: 15 LNEQLTSELTAINQYFLHSKMQDNWGFTELAAHTRAESFDEMRHAEEITDRILLLDGLPN 74
Query: 69 FSSIEAPVISANDVEGLFSLMYEHENKVTIAYDDAIETILAEKDHQTFQFLQWFVKEQHE 128
+ I + I + F E V I ++D + L+ V ++ E
Sbjct: 75 YQRIGSLRIG-QTLREQFEADLAIEYDVLNRLKPGIVMCREKQDTTSAVLLEKIVADEEE 133
Query: 129 EMALFRRILDKIRLIG 144
+ L+ + +G
Sbjct: 134 HIDYLETQLELMDKLG 149
>1z6o_M Ferritin heavy chain; metal binding protein, iron storage; 1.91A
{Trichoplusia NI} SCOP: a.25.1.1
Length = 191
Score = 83.1 bits (205), Expect = 2e-17
Identities = 24/162 (14%), Positives = 55/162 (33%), Gaps = 13/162 (8%)
Query: 9 LNELMNMEYVAQYHYMQAAAWAASH--NLDGCCNFLLKHAMEEHSHVIRIFKHLTDLGVE 66
+ + + ME A Y+ A + N G A EE H +++ ++L G
Sbjct: 25 MRQQIQMEVGASLQYLAMGAHFSKDVVNRPGFAQLFFDAASEEREHAMKLIEYLLMRGEL 84
Query: 67 AKFSSIEAPVISA-----NDVEGLFSLMYEHENKVTIAYDDAIETILAEKDHQTFQFLQW 121
S V E+ VT + + I+ + + + + +
Sbjct: 85 TNDVSSLLQVRPPTRSSWKGGVEALEHALSMESDVTKSIRNVIKACEDDSEFNDYHLVDY 144
Query: 122 ----FVKEQHEEMALFRRILDKIRLIGSGPHS--RYMFDLEI 157
F++EQ++ ++ + + ++FD ++
Sbjct: 145 LTGDFLEEQYKGQRDLAGKASTLKKLMDRHEALGEFIFDKKL 186
>1jgc_A Bacterioferritin, BFR; iron storage protein, metal binding protein;
HET: HEM; 2.60A {Rhodobacter capsulatus} SCOP: a.25.1.1
Length = 161
Score = 83.1 bits (205), Expect = 2e-17
Identities = 17/136 (12%), Positives = 36/136 (26%), Gaps = 1/136 (0%)
Query: 9 LNELMNMEYVAQYHYMQAAAWAASHNLDGCCNFLLKHAMEEHSHVIRIFKHLTDLGVEAK 68
LN + E A Y L + ++EE H +I + L
Sbjct: 11 LNAALRSELTAISQYWVHFRLQEDWGLAKMAKKSREESIEEMGHADKIIARILFLEGHPN 70
Query: 69 FSSIEAPVISANDVEGLFSLMYEHENKVTIAYDDAIETILAEKDHQTFQFLQWFVKEQHE 128
++ I E+ Y +A + D + + + ++
Sbjct: 71 LQKLDPLRIG-EGPRETLECDLAGEHDALKLYREARDYCAEVGDIVSKNIFESLITDEEG 129
Query: 129 EMALFRRILDKIRLIG 144
+ + +G
Sbjct: 130 HVDFLETQISLYDRLG 145
>2cih_A Ferritin heavy chain; apoferritin, ferroxidase, DI-iron non-heme
protein, iron storage, iron, metal-binding,
oxidoreductase, phosphorylation; 1.5A {Homo sapiens}
PDB: 2chi_A 2cei_A 1fha_A 2fha_A 2cn7_A 2iu2_A 2clu_A
2cn6_A 3erz_A 3es3_A 2z6m_A 1r03_A
Length = 183
Score = 82.8 bits (204), Expect = 3e-17
Identities = 25/152 (16%), Positives = 53/152 (34%), Gaps = 6/152 (3%)
Query: 9 LNELMNMEYVAQYHYMQAAAWAASH--NLDGCCNFLLKHAMEEHSHVIRIFKHLTDLGVE 66
+N +N++ A Y Y+ + + L + L + EE H ++ K G
Sbjct: 21 INRQINLDLYASYVYLSMSYYFDRDDVALKNFAKYFLHQSHEEREHAEKLMKLQNQRGGR 80
Query: 67 AKFSSIEAPVISA-NDVEGLFSLMYEHENKVTIAYDDAIETILAEKDHQTFQFLQW-FVK 124
I+ P E V + + + + D F++ ++
Sbjct: 81 IFLQDIQKPDCDDWESGLNAMECALHLEKNVNQSLLELHKLATDKNDPHLCDFIETHYLN 140
Query: 125 EQHEEMALFRRILDKIRLIGSGP--HSRYMFD 154
EQ + + + +R +G+ + Y+FD
Sbjct: 141 EQVKAIKELGDHVTNLRKMGAPESGLAEYLFD 172
>3gvy_A Bacterioferritin; iron storage, DI-iron, ferroxidase activity,
heme, metal binding protein; HET: HEM; 2.80A
{Rhodobacter sphaeroides 2}
Length = 161
Score = 80.1 bits (197), Expect = 2e-16
Identities = 19/136 (13%), Positives = 42/136 (30%), Gaps = 1/136 (0%)
Query: 9 LNELMNMEYVAQYHYMQAAAWAASHNLDGCCNFLLKHAMEEHSHVIRIFKHLTDLGVEAK 68
LN + E A Y + K ++EE H ++ + + LG
Sbjct: 11 LNAALRSELTAVSQYWLHYRLQEDWGFGSIAHKSRKESIEEMHHADKLIQRIIFLGGHPN 70
Query: 69 FSSIEAPVISANDVEGLFSLMYEHENKVTIAYDDAIETILAEKDHQTFQFLQWFVKEQHE 128
+ I + E+ Y +A + +D+ + + + ++
Sbjct: 71 LQRLNPLRIG-QTLRETLDADLAAEHDARTLYIEARDHCEKVRDYPSKMLFEELIADEEG 129
Query: 129 EMALFRRILDKIRLIG 144
+ +D + IG
Sbjct: 130 HIDYLETQIDLMGSIG 145
>2fkz_A Bacterioferritin; ferroxidase, DIIRON site, iron transport, metal
binding protein; HET: HEM; 2.00A {Azotobacter
vinelandii} SCOP: a.25.1.1 PDB: 2fl0_A* 1sof_A*
Length = 155
Score = 79.7 bits (196), Expect = 3e-16
Identities = 22/136 (16%), Positives = 48/136 (35%), Gaps = 1/136 (0%)
Query: 9 LNELMNMEYVAQYHYMQAAAWAASHNLDGCCNFLLKHAMEEHSHVIRIFKHLTDLGVEAK 68
LN+++ E +A Y A L+ +++E H ++ K + L
Sbjct: 11 LNKILGNELIAINQYFLHARMYEDWGLEKLGKHEYHESIDEMKHADKLIKRILFLEGLPN 70
Query: 69 FSSIEAPVISANDVEGLFSLMYEHENKVTIAYDDAIETILAEKDHQTFQFLQWFVKEQHE 128
+ +I + + + E AI + D+ + + L+ ++ + +
Sbjct: 71 LQELGKLLIG-EHTKEMLECDLKLEQAGLPDLKAAIAYCESVGDYASRELLEDILESEED 129
Query: 129 EMALFRRILDKIRLIG 144
+ LD I IG
Sbjct: 130 HIDWLETQLDLIDKIG 145
>1rcd_A L ferritin; iron storage; 2.00A {Rana catesbeiana} SCOP: a.25.1.1
PDB: 1rcg_A 1rci_A 1rcc_A 1rce_A
Length = 173
Score = 79.3 bits (195), Expect = 4e-16
Identities = 26/152 (17%), Positives = 55/152 (36%), Gaps = 6/152 (3%)
Query: 9 LNELMNMEYVAQYHYMQAAAWAASH--NLDGCCNFLLKHAMEEHSHVIRIFKHLTDLGVE 66
LN +N+++ + Y Y+ A++ L F + + EE H ++ ++ G
Sbjct: 17 LNRTVNLKFHSSYVYLSMASYFNRDDVALSNFAKFFRERSEEEKEHAEKLIEYQNQRGGR 76
Query: 67 AKFSSIEAPVISA-NDVEGLFSLMYEHENKVTIAYDDAIETILAEKDHQTFQFLQ-WFVK 124
S+E P + + + V A D + D FL+ ++
Sbjct: 77 VFLQSVEKPERDDWANGLEALQTALKLQKSVNQALLDLHAVAADKSDPHMTDFLESPYLS 136
Query: 125 EQHEEMALFRRILDKIRLIGSGPHS--RYMFD 154
E E + + ++ + S Y+F+
Sbjct: 137 ESVETIKKLGDHITSLKKLWSSHPGMAEYLFN 168
>2v2p_A Ferritin light chain; metal transport, iron, haemin, apoferritin,
iron storage, metal-binding; 1.15A {Equus caballus} PDB:
2v2r_A 2v2m_A 2v2l_A 2v2s_A 2v2o_A 2v2n_A 2za6_A 2v2j_A
2v2i_A 2z5p_A 1dat_A 2g4h_A 1aew_A 2zg9_X 2zg8_X 3fi6_A
2w0o_A 1hrs_A* 1ier_A 1ies_A ...
Length = 174
Score = 77.8 bits (191), Expect = 1e-15
Identities = 30/152 (19%), Positives = 54/152 (35%), Gaps = 6/152 (3%)
Query: 9 LNELMNMEYVAQYHYMQAAAWAASH--NLDGCCNFLLKHAMEEHSHVIRIFKHLTDLGVE 66
+N L+N+ A Y Y+ + L+G C+F + A ++ R+ K G
Sbjct: 16 VNRLVNLYLRASYTYLSLGFYFDRDDVALEGVCHFFRQLAQQKMQGAERLLKMQNQRGGR 75
Query: 67 AKFSSIEAPVI-SANDVEGLFSLMYEHENKVTIAYDDAIETILAEKDHQTFQFLQW-FVK 124
A F ++ P E + A D A+ D FL+ F+
Sbjct: 76 ALFQDLQKPSQDEWGTTPDAMKAAIVLEKSLNQALLDLHALGSAQADPHLCDFLESHFLD 135
Query: 125 EQHEEMALFRRILDKIRLIGSGP--HSRYMFD 154
E+ + + L I+ + Y+F+
Sbjct: 136 EEVKLIKKMGDHLTNIQRLVGSQAGLGEYLFE 167
>1bg7_A Ferritin; iron storage; 1.85A {Rana catesbeiana} SCOP: a.25.1.1
PDB: 1mfr_A
Length = 176
Score = 77.0 bits (189), Expect = 2e-15
Identities = 29/152 (19%), Positives = 54/152 (35%), Gaps = 6/152 (3%)
Query: 9 LNELMNMEYVAQYHYMQAAAWAASH--NLDGCCNFLLKHAMEEHSHVIRIFKHLTDLGVE 66
+N ++NME A Y Y+ A + L F + + EE H ++ K G
Sbjct: 17 INRMVNMELYASYTYLSMAFYFDRDDIALHNVAKFFKEQSHEEREHAEKLMKDQNKRGGR 76
Query: 67 AKFSSIEAPVISA-NDVEGLFSLMYEHENKVTIAYDDAIETILAEKDHQTFQFLQ-WFVK 124
++ P + + E V A D + + D FL+ + +
Sbjct: 77 IVLQDVQKPERDEWGNTLEAMQAALQLEKTVNQALLDLHKVGSDKVDPHLCDFLETEYPE 136
Query: 125 EQHEEMALFRRILDKIRLIGSGP--HSRYMFD 154
EQ + + + ++ +G Y+FD
Sbjct: 137 EQVKSIKQLGDYITNLKRLGLPQNGMGEYLFD 168
>3e2c_A Bacterioferritin; DIIRON site, iron storage, metal-binding, heme,
iron, oxidoreductase; HET: HEM; 1.80A {Escherichia coli}
PDB: 2vxi_A* 1bfr_A* 1bcf_A* 2htn_A* 3e1j_A* 3e1l_A*
3e1m_A* 3e1n_A* 3e1o_A* 3e1p_A* 3ghq_A* 3e1q_A*
Length = 158
Score = 71.6 bits (175), Expect = 8e-14
Identities = 26/137 (18%), Positives = 49/137 (35%), Gaps = 1/137 (0%)
Query: 8 VLNELMNMEYVAQYHYMQAAAWAASHNLDGCCNFLLKHAMEEHSHVIRIFKHLTDLGVEA 67
LN+L+ E VA Y A + L + +++E H R + + L
Sbjct: 10 YLNKLLGNELVAINQYFLHARMFKNWGLKRLNDVEYHESIDEMKHADRYIERILFLEGLP 69
Query: 68 KFSSIEAPVISANDVEGLFSLMYEHENKVTIAYDDAIETILAEKDHQTFQFLQWFVKEQH 127
+ I DVE + E +AI + D+ + + ++++
Sbjct: 70 NLQDLGKLNIG-EDVEEMLRSDLALELDGAKNLREAIGYADSVHDYVSRDMMIEILRDER 128
Query: 128 EEMALFRRILDKIRLIG 144
+ R LD I+ +G
Sbjct: 129 GHIDWLRTELDLIQKMG 145
>1j30_A 144AA long hypothetical rubrerythrin; sulerythrin, sulfolobus
tokodaii strain 7, four-helix bundle, domain swapping;
1.70A {Sulfolobus tokodaii str} SCOP: a.25.1.1
Length = 144
Score = 70.4 bits (172), Expect = 2e-13
Identities = 17/133 (12%), Positives = 39/133 (29%), Gaps = 4/133 (3%)
Query: 9 LNELMNMEYVAQYHYMQAAAWAASHNLDGCCNFLLKHAMEEHSHVIRIFKHLTDLGVEAK 68
L + E +A Y+ A A L A E +H + G+
Sbjct: 13 LKQGFIGESMANRRYLYFAKRADEEGYPEIAGLLRSIAEGETAHAFGHLDFIRQGGLTD- 71
Query: 69 FSSIEAPVISANDVEGLFSLMYEHENKVTIAYDDAIETILAEKDHQTFQFLQWFVKEQHE 128
+ + S + + T Y + E + ++ + + +
Sbjct: 72 ---PATDKPIGTLEQMIESAIAGETYEWTQMYPGFAKVAREEGFPEVAEWFETLARAEKS 128
Query: 129 EMALFRRILDKIR 141
F+ +L +++
Sbjct: 129 HAEKFQNVLKQLK 141
>2qqy_A Sigma B operon; dodecameric alpha-helical, ferritin fold,
structural genomics, PSI-2, protein structure
initiative; 2.00A {Bacillus anthracis str}
Length = 149
Score = 69.8 bits (170), Expect = 3e-13
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 2/136 (1%)
Query: 9 LNELMNMEYVAQYHYMQAAAWAASHNLDGCCNFLLKHAMEEHSHVIRIFKHLTDLGVEAK 68
LNE + EY A Y AA + F +E H + + + + LG
Sbjct: 15 LNEDLAGEYSAIIMYNHNAATVSGIYRQVLKPFFESEISDEQGHALYLAEKIKTLGGTPT 74
Query: 69 FSSIEAPVISANDVEGLFSLMYEHENKVTIAYDDAIETILAEKDHQTFQFLQWFVKEQHE 128
+ DV + + E + Y+ E + L+ + ++
Sbjct: 75 TIPLRVKQA--EDVREMLEYARQSEYETIKRYEKRKEQAANLNMTELVVKLEDMIADETN 132
Query: 129 EMALFRRILDKIRLIG 144
M R+L+ ++
Sbjct: 133 HMEELDRLLNDKAMVL 148
>2vzb_A Putative bacterioferritin-related protein; DPS, DPSL, iron,
oxidative stress, metal transport; 2.30A {Bacteroides
fragilis}
Length = 170
Score = 60.6 bits (146), Expect = 2e-10
Identities = 26/144 (18%), Positives = 46/144 (31%), Gaps = 9/144 (6%)
Query: 9 LNELMNMEYVAQYHYMQAAAWAASHNLDGCCNFLLKHAMEEHSHVIRIFKHLTDLGVEA- 67
LN ++ E++A Y Y A +HA EE H I + +L
Sbjct: 22 LNAALSEEWLAYYQYWVGALVVEGAMRADVQGEFEEHAEEERHHAQLIADRIIELEGVPV 81
Query: 68 -------KFSSIEAPVISANDVEGLFSLMYEHENKVTIAYDDAIETILAEKDHQTFQFLQ 120
+ + + +A D L + E + Y + KD+ T +
Sbjct: 82 LDPKKWFELARCKYDSPTAFDSVSLLNQNVSSERCAILRYQEIANFT-NGKDYTTCDIAK 140
Query: 121 WFVKEQHEEMALFRRILDKIRLIG 144
+ E+ E + L I +
Sbjct: 141 HILAEEEEHEQDLQDYLTDIARMK 164
>2oh3_A Rubrerythrin, COG1633: uncharacterized conserved protein;
ZP_00055496.1, structural genomics; HET: MSE PGE; 2.00A
{Magnetospirillum magnetotacticum ms-1} SCOP: a.25.1.8
Length = 167
Score = 59.2 bits (142), Expect = 4e-10
Identities = 23/152 (15%), Positives = 42/152 (27%), Gaps = 14/152 (9%)
Query: 1 MTNTRDRVLNELMNMEYVAQYHYMQAAAWAASHNLDGCCNFLLKHAMEEHSHVIRIFKHL 60
M T L + +E A Y++ A +HN A H I +
Sbjct: 2 MGYTLAEFLAHAIALETEAAERYVELADMMEAHNNLDTATVFRDMARFSTLHGDEIKQRS 61
Query: 61 TDLGVEAKFSSI-----------EAPVISANDVEGLFSLMYEHENKVTIAYDDAIETILA 109
L + S E + ++E + Y +A
Sbjct: 62 RALELPKLMSWQYRWKTPPEVGDENDIHYLMTPYHALRYARDNEIRGMEYYKEAAANS-- 119
Query: 110 EKDHQTFQFLQWFVKEQHEEMALFRRILDKIR 141
D + + F E+ E + + ++K
Sbjct: 120 -ADPEVKRLGADFAAEEAEHVVALDKWIEKTP 150
Score = 24.9 bits (53), Expect = 8.3
Identities = 17/78 (21%), Positives = 28/78 (35%), Gaps = 4/78 (5%)
Query: 4 TRDRVLNELMNMEYVAQYHYMQAAAWAASHNLDGCCNFLLKHAMEEHSHVIRIFKHLTDL 63
T L + E +Y +AAA +A + A EE HV+ + K +
Sbjct: 93 TPYHALRYARDNEIRGMEYYKEAAANSADPEV---KRLGADFAAEEAEHVVALDKWIEKT 149
Query: 64 GVEAKFSSIEA-PVISAN 80
+ S +A P +
Sbjct: 150 PRPSITWSEDADPAQCVD 167
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix
bundle, rubredoxin-like, electron transport; 1.63A
{Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB:
1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A
1ryt_A
Length = 191
Score = 58.5 bits (141), Expect = 6e-10
Identities = 20/132 (15%), Positives = 35/132 (26%), Gaps = 2/132 (1%)
Query: 9 LNELMNMEYVAQYHYMQAAAWAASHNLDGCCNFLLKHAMEEHSHVIRIFKHLTDLGVEAK 68
+ E A+ Y A + + A +E H R+FK L +E
Sbjct: 13 ILTAFAGESQARNRYNYFGGQAKKDGFVQISDIFAETADQEREHAKRLFKFLEGGDLEIV 72
Query: 69 FSSIEAPVISANDVEGLFSLMYEHENKVTIAYDDAIETILAEKDHQTFQFLQWFVKEQHE 128
+ I A+ L + ++ T Y E + + +
Sbjct: 73 AAF--PAGIIADTHANLIASAAGEHHEYTEMYPSFARIAREEGYEEIARVFASIAVAEEF 130
Query: 129 EMALFRRILDKI 140
F I
Sbjct: 131 HEKRFLDFARNI 142
>2clb_A DPS-like protein; DI-iron carboxylate, hypothetical protein,
bacterioferritin, hydrogen peroxide, metal binding
protein, archaea; 2.4A {Sulfolobus solfataricus}
Length = 188
Score = 54.8 bits (131), Expect = 9e-09
Identities = 22/141 (15%), Positives = 47/141 (33%), Gaps = 11/141 (7%)
Query: 7 RVLNELMNMEYVAQYHYMQAAAWAASHNLDGCCNFLLKHAMEEHSHVIRIFKHLTDLG-- 64
L + E+ Y+Y +G +E+ H + + + +LG
Sbjct: 28 DKLVKATAAEFTTYYYYTILRMHLTGMEGEGLKEIAEDARLEDRLHFELMTQRIYELGGG 87
Query: 65 --------VEAKFSSIEAPVISANDVEGLFSLMYEHENKVTIAYDDAIETILAEKDHQTF 116
+ S + D + + ++ E E + + + KD +T+
Sbjct: 88 LPRDIRQLADISACSDAYLPENWKDPKEILKVLLEAEQCAIRTWKEVC-DMTYGKDPRTY 146
Query: 117 QFLQWFVKEQHEEMALFRRIL 137
Q ++E+ E A F +L
Sbjct: 147 DLAQRILQEEIEHEAWFLELL 167
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron
transfer, DIIRON center, oxidoreductase; 1.40A
{Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1
PDB: 1yv1_A 1yux_A
Length = 202
Score = 53.5 bits (128), Expect = 2e-08
Identities = 18/132 (13%), Positives = 36/132 (27%), Gaps = 1/132 (0%)
Query: 9 LNELMNMEYVAQYHYMQAAAWAASHNLDGCCNFLLKHAMEEHSHVIRIFKHLTDLGVEAK 68
L + E A Y A A + A E H+ + + ++ +
Sbjct: 33 LKAAIAGETGAHAKYTAFAKAAREQGYEQIARLFEATAAAELIHIGLEYALVAEMEPGYE 92
Query: 69 FSSIEAPVISANDVEGLFSLMYEHENKVTIAYDDAIETILAEKDHQTFQFLQWFVKEQHE 128
++ AP + D L S + + Y I E + + +
Sbjct: 93 KPTVAAPSAYSCD-LNLISGANGEIYETSDMYPAFIRKAQEEGNSKAVHVFTRAKLAESV 151
Query: 129 EMALFRRILDKI 140
+ + I
Sbjct: 152 HAERYLAAYNDI 163
>1nnq_A Rubrerythrin; structural genomics, PSI, protein structure
initiative, southeast collaboratory for structural
genomics, secsg; 2.35A {Pyrococcus furiosus} SCOP:
a.25.1.1 g.41.5.1 PDB: 2hr5_A
Length = 171
Score = 41.2 bits (96), Expect = 1e-04
Identities = 21/132 (15%), Positives = 37/132 (28%), Gaps = 15/132 (11%)
Query: 9 LNELMNMEYVAQYHYMQAAAWAASHNLDGCCNFLLKHAMEEHSHVIRIFKHLTDLGVEAK 68
L E E +A Y+ A A A E H F L LG
Sbjct: 12 LEEAFAGESMAHMRYLIFAEKAEQEGFPNIAKLFRAIAYAEFVHAKNHFIALGKLG---- 67
Query: 69 FSSIEAPVISANDVEGLFSLMYEHENKVTIAYDDAIETILAEKDHQTFQFLQWFVKEQHE 128
E L + +V Y + + + + + + ++ +
Sbjct: 68 -----------KTPENLQMGIEGETFEVEEMYPVYNKAAEFQGEKEAVRTTHYALEAEKI 116
Query: 129 EMALFRRILDKI 140
L+R+ +K
Sbjct: 117 HAELYRKAKEKA 128
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl
reductase, beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 31.7 bits (71), Expect = 0.077
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 10/60 (16%)
Query: 55 RIFKHLTDL--GVEAKFSSIEAPVI-------SANDVEGLFSLMYEHENKVTIAYD-DAI 104
R K +TD + AK+ + + +I S DVE L +Y+ E + +D DAI
Sbjct: 510 RFSKQVTDYYQSIYAKYGAKGSTLIVVPFNQGSKQDVEALIEFIYDTEKNGGLGWDLDAI 569
>2fzf_A Hypothetical protein; structural genomics, southeast collaboratory
for structural genomics, secsg, protein structure
initiative, PSI; 2.70A {Pyrococcus furiosus} SCOP:
a.25.1.1
Length = 175
Score = 31.0 bits (69), Expect = 0.13
Identities = 17/146 (11%), Positives = 42/146 (28%), Gaps = 17/146 (11%)
Query: 6 DRVLNELMNMEYVAQYHYMQAAAWAASHNLDGCCNFLLKHAMEEHSHVIRIFKHLTDLGV 65
+ +L + E A+ Y A ++ + A EE H + K + +
Sbjct: 22 EELLGMAIKAEIGAREFYKSLAEKI---KIEALKEKINWLAEEEKKHEALLRKLYSQMFP 78
Query: 66 EAKFSSIE-----------APVISANDVEGLFSLMYEHENKVTIAYDDAIETILAEKDHQ 114
+ + + D+ L + E Y E + K+ +
Sbjct: 79 GKEVVFPKEHIGPELQPVARELEKVQDIIDLIRWAMKAEEIAAEFYLKLEEMV---KEEE 135
Query: 115 TFQFLQWFVKEQHEEMALFRRILDKI 140
+ +++ + R + +
Sbjct: 136 KKRLMRYLADMERGHYYTLRAEYELL 161
>2ib0_A Conserved hypothetical alanine rich protein; 4-helix bundle,
structural genomics, PSI-2, protein structure
initiative; 2.00A {Mycobacterium tuberculosis} SCOP:
a.25.1.9
Length = 170
Score = 29.2 bits (65), Expect = 0.41
Identities = 19/106 (17%), Positives = 33/106 (31%), Gaps = 11/106 (10%)
Query: 6 DRVLNELMNMEYVAQYHYMQAAAWAASHNLDGCCNFLLKHAMEEHSHVIRIFKHLTDLGV 65
+ L + + +E+ Y Y +A + + + + L+ GV
Sbjct: 23 NAALCDALAVEHATIYGYGIVSALSPPGVNF----LVADALKQHRHRRDDVIVMLSARGV 78
Query: 66 E----AKFSSIEAPVISANDVEGLFSLMYEHENKVTIAYDDAIETI 107
A + V SA D L M EN A+ +E
Sbjct: 79 TAPIAAAGYQLPMQVSSAADAARLAVRM---ENDGATAWRAVVEHA 121
>1vjx_A Putative ferritin-like DIIRON-carboxylate protein TM1526;
structural genomics, JCSG, PSI, protein structure
initiative; 2.30A {Thermotoga maritima} SCOP: a.25.1.1
Length = 157
Score = 28.7 bits (63), Expect = 0.59
Identities = 14/141 (9%), Positives = 39/141 (27%), Gaps = 14/141 (9%)
Query: 8 VLNELMNMEYVAQYHYMQAAAWAASHNLDGCCNFLLKHAMEEHSHVIRIFKHLTDLGVEA 67
+L + +E + Y + + L+ A +E H K +
Sbjct: 18 ILTVAIRLEEEGERFYRELSEHFNGEIKK----TFLELADQERIHAEIFRKMSDQENWDE 73
Query: 68 KFSSIEA-------PVISANDVEGLFSLMYEHENKVTI---AYDDAIETILAEKDHQTFQ 117
S + P S +L + +++ + E + +
Sbjct: 74 VDSYLAGYAFYEVFPDTSEILRRKDLTLKEVLDIAISVEKDSIILYYELKDGLVNSDAQK 133
Query: 118 FLQWFVKEQHEEMALFRRILD 138
++ + ++ E + +
Sbjct: 134 TVKKIIDQEKEHLRKLLEMKR 154
>1g8m_A Aicar transformylase-IMP cyclohydrolase; homodimer, 2 functional
domains, IMPCH domain = alpha/beta/alpha; HET: G; 1.75A
{Gallus gallus} SCOP: c.24.1.3 c.97.1.4 PDB: 1thz_A*
2b1g_A* 2b1i_A* 2iu0_A* 2iu3_A* 1m9n_A* 1oz0_A* 1pkx_A*
1p4r_A* 1pl0_A*
Length = 593
Score = 28.2 bits (62), Expect = 0.85
Identities = 9/97 (9%), Positives = 23/97 (23%), Gaps = 8/97 (8%)
Query: 13 MNMEYVAQYHYMQAAAWAASHNL---DGCCNFLLKHAMEEHSHVIRIFKHLTDLGVEAKF 69
+ NL + + FKH++ G
Sbjct: 219 QLYTTRPKLPLTVVNGSPGFINLCDALNAWQLVKELKQALGIPAAASFKHVSPAGA---- 274
Query: 70 SSIEAPVISANDVEGLFSLMYEHENKVTIAYDDAIET 106
++ P+ + +++ + AY +
Sbjct: 275 -AVGIPLSEEEAQVCMVHDLHKTLTPLASAYARSRGA 310
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 28.4 bits (63), Expect = 0.91
Identities = 22/105 (20%), Positives = 29/105 (27%), Gaps = 33/105 (31%)
Query: 50 HSH-----VIRIFKHLTDLGVEAKFSSIEAPVISANDVEGLFSLMYEHENKVTIAYDDAI 104
HSH I K L V I+ PV D L L + + +
Sbjct: 428 HSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVL---SGSIS----ERIV 480
Query: 105 ETILAEKDHQTFQFLQWFVKEQHEEMAL-FR--RILDKIRLIGSG 146
+ I+ W E F+ ILD G G
Sbjct: 481 DCIIRLPVK-------W-------ETTTQFKATHILD----FGPG 507
>1v97_A XD, xanthine dehydrogenase; molybdopterin, FYX-051, reaction
intermediate, oxidoreductase; HET: MTE FAD FYX; 1.94A
{Bos taurus} SCOP: a.56.1.1 d.15.4.2 d.41.1.1 d.87.2.1
d.133.1.1 d.145.1.3 PDB: 1fo4_A* 1vdv_A* 3bdj_A* 1n5x_A*
2ckj_A* 2e1q_A* 2e3t_A* 1wyg_A* 3b9j_C* 1fiq_C* 3eub_C*
3etr_C* 1fiq_B* 3b9j_B* 3etr_B* 3eub_B* 3b9j_A* 1fiq_A*
3eub_A* 3etr_A*
Length = 1332
Score = 27.7 bits (61), Expect = 1.3
Identities = 15/87 (17%), Positives = 34/87 (39%), Gaps = 11/87 (12%)
Query: 61 TDLGVEAKFSSIEAPV-ISANDVEGLFSLMYEHENKVTIAYDDAIETILAEKDHQTFQFL 119
T++G+E KF + P+ I + L ++ ++ A + + L
Sbjct: 262 TEIGIEMKFKNQLFPMIICPAWIPELNAV-EHGPEGISFG---AACAL-----SSVEKTL 312
Query: 120 QWFVKEQHEEMA-LFRRILDKIRLIGS 145
V + + +FR +L+++R
Sbjct: 313 LEAVAKLPTQKTEVFRGVLEQLRWFAG 339
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A
{Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A*
3hb9_A*
Length = 1150
Score = 25.7 bits (56), Expect = 4.8
Identities = 13/69 (18%), Positives = 24/69 (34%), Gaps = 2/69 (2%)
Query: 26 AAAWAASHNLDGCCNFLLKHAMEEHSHVIRIFKHLTDLGVEAKFSSIEAPVISANDVEGL 85
+ A + D + ++ + + V RIF L V+ + EA + EG
Sbjct: 616 SNAVGYKNYPDNVIHKFVQESAKAGIDVFRIFDSLNW--VDQMKVANEAVQEAGKISEGT 673
Query: 86 FSLMYEHEN 94
+ N
Sbjct: 674 ICYTGDILN 682
>2vxx_A Starvation induced DNA binding protein; stress response protein,
DPS, oxidation, iron binding, ferroxidase centre; HET:
PG4; 2.4A {Synechococcus elongatus}
Length = 192
Score = 25.8 bits (56), Expect = 5.0
Identities = 15/138 (10%), Positives = 34/138 (24%), Gaps = 19/138 (13%)
Query: 9 LNELMNMEYVAQYHYMQAAAWAASHNLDGCCNFLLKHAMEEH-----------SHVIRIF 57
+N L+ Y + + ++G + L ++ +
Sbjct: 33 MNRLLASFQALYLQYQKHH-F----VVEGAEFYPLHQFFQDCYEQVQDHVHALGERLNGL 87
Query: 58 KHLTDLGVE--AKFSSIEAPVISANDVEGLFSLMYEHENKVTIAYDDAIETILAEKDHQT 115
+ G + A A + + S + E + + D T
Sbjct: 88 GGVPVAGFQQLAALCCFTPEPEGAFNCRQMLSNDLQAEQAIIGVLRQQATQAESLGDRAT 147
Query: 116 FQFLQWFVKEQHEEMALF 133
+ + EE A
Sbjct: 148 AYLYDQIL-LKTEERAYH 164
>3hq1_A 2-isopropylmalate synthase; LEUA, mycobacterium tuberculosis
inhibition, bromopyruvate, amino-acid biosynthesis; HET:
FLC; 1.70A {Mycobacterium tuberculosis H37RV} PDB:
1sr9_A 3hpz_A 3hps_A* 3fig_A 3hpx_A
Length = 644
Score = 25.1 bits (54), Expect = 7.2
Identities = 9/32 (28%), Positives = 13/32 (40%), Gaps = 6/32 (18%)
Query: 54 IRIFKHLTDLGVEAKFSSIEA--PVISANDVE 83
R+F L +G + IE P S D +
Sbjct: 96 RRMFDLLVRMGYK----EIEVGFPSASQTDFD 123
>3fay_A P195, RAS GTPase-activating-like protein iqgap1; all alpha,
calmodulin-binding, cell membrane, membrane,
phosphoprotein, membrane protein; 2.20A {Homo sapiens}
Length = 387
Score = 25.3 bits (55), Expect = 7.5
Identities = 13/81 (16%), Positives = 35/81 (43%), Gaps = 11/81 (13%)
Query: 41 FLLKHAMEEHSHVIRIFKHLTDLG-VEAKFSSIEAP----------VISANDVEGLFSLM 89
+ ++ + + R F+ D+ ++ KF+ E IS ++ +L+
Sbjct: 292 IINEYLSQSYQKFRRFFQTACDVPELQDKFNVDEYSDLVTLTKPVIYISIGEIINTHTLL 351
Query: 90 YEHENKVTIAYDDAIETILAE 110
+H++ + ++D I +L +
Sbjct: 352 LDHQDAIAPEHNDPIHELLDD 372
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.323 0.134 0.396
Gapped
Lambda K H
0.267 0.0493 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 1,420,649
Number of extensions: 61356
Number of successful extensions: 346
Number of sequences better than 10.0: 1
Number of HSP's gapped: 297
Number of HSP's successfully gapped: 66
Length of query: 164
Length of database: 5,693,230
Length adjustment: 85
Effective length of query: 79
Effective length of database: 3,632,490
Effective search space: 286966710
Effective search space used: 286966710
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (24.8 bits)