RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254780720|ref|YP_003065133.1| Ferroxidase [Candidatus Liberibacter asiaticus str. psy62] (164 letters) >3bvf_A Ferritin; iron storage, cytoplasm, metal-binding, oxidoreductase; 1.50A {Helicobacter pylori} PDB: 3bve_A 3bvi_A 3bvk_A 3bvl_A 3egm_A Length = 181 Score = 132 bits (334), Expect = 3e-32 Identities = 60/156 (38%), Positives = 88/156 (56%) Query: 9 LNELMNMEYVAQYHYMQAAAWAASHNLDGCCNFLLKHAMEEHSHVIRIFKHLTDLGVEAK 68 LNE +N E + YM ++W +H+LDG FL HA EE+ H ++ L + V + Sbjct: 24 LNEQVNKEMNSSNLYMSMSSWCYTHSLDGAGLFLFDHAAEEYEHAKKLIIFLNENNVPVQ 83 Query: 69 FSSIEAPVISANDVEGLFSLMYEHENKVTIAYDDAIETILAEKDHQTFQFLQWFVKEQHE 128 +SI AP + +F YEHE ++ + ++ ++ + KDH TF FLQW+V EQHE Sbjct: 84 LTSISAPEHKFEGLTQIFQKAYEHEQHISESINNIVDHAIKSKDHATFNFLQWYVAEQHE 143 Query: 129 EMALFRRILDKIRLIGSGPHSRYMFDLEIEKIANKS 164 E LF+ ILDKI LIG+ H Y+ D ++ IA Sbjct: 144 EEVLFKDILDKIELIGNENHGLYLADQYVKGIAKSR 179 >2jd6_0 Ferritin homolog, ferritin; metal transport, iron, pores, archaeon, entry channels, thermostability, hyperthermophIle, ferroxidase center; 2.75A {Pyrococcus furiosus} PDB: 2jd7_0 2jd8_0 Length = 174 Score = 122 bits (308), Expect = 4e-29 Identities = 45/151 (29%), Positives = 70/151 (46%) Query: 9 LNELMNMEYVAQYHYMQAAAWAASHNLDGCCNFLLKHAMEEHSHVIRIFKHLTDLGVEAK 68 LN+ +N E + Y Y AA+ L+G N++ A EE H +R + ++ D + Sbjct: 10 LNDQLNRELYSAYLYFAMAAYFEDLGLEGFANWMKAQAEEEIGHALRFYNYIYDRNGRVE 69 Query: 69 FSSIEAPVISANDVEGLFSLMYEHENKVTIAYDDAIETILAEKDHQTFQFLQWFVKEQHE 128 I P F YEHE ++ + + EKD+ T FL+WF+ EQ E Sbjct: 70 LDEIPKPPKEWESPLKAFEAAYEHEKFISKSIYELAALAEEEKDYSTRAFLEWFINEQVE 129 Query: 129 EMALFRRILDKIRLIGSGPHSRYMFDLEIEK 159 E A ++ILDK++ P +M D E+ Sbjct: 130 EEASVKKILDKLKFAKDSPQILFMLDKELSA 160 >1eum_A Ferritin 1; ECFTNA, metal binding protein; 2.05A {Escherichia coli} SCOP: a.25.1.1 Length = 165 Score = 119 bits (300), Expect = 3e-28 Identities = 56/156 (35%), Positives = 89/156 (57%) Query: 9 LNELMNMEYVAQYHYMQAAAWAASHNLDGCCNFLLKHAMEEHSHVIRIFKHLTDLGVEAK 68 LNE MN+E + Y Q +AW + H +G FL +HA EE +H+ R+F +LTD G + Sbjct: 10 LNEQMNLELYSSLLYQQMSAWCSYHTFEGAAAFLRRHAQEEMTHMQRLFDYLTDTGNLPR 69 Query: 69 FSSIEAPVISANDVEGLFSLMYEHENKVTIAYDDAIETILAEKDHQTFQFLQWFVKEQHE 128 +++E+P + ++ LF Y+HE +T ++ + +D+ TF FLQW+V EQHE Sbjct: 70 INTVESPFAEYSSLDELFQETYKHEQLITQKINELAHAAMTNQDYPTFNFLQWYVSEQHE 129 Query: 129 EMALFRRILDKIRLIGSGPHSRYMFDLEIEKIANKS 164 E LF+ I+DK+ L G Y D E+ + ++ Sbjct: 130 EEKLFKSIIDKLSLAGKSGEGLYFIDKELSTLDTQN 165 >3e6s_A Ferritin; iron storage, ferroxidase, oxidoreductase; 1.95A {Pseudo-nitzschia multiseries} PDB: 3e6r_A Length = 168 Score = 118 bits (296), Expect = 8e-28 Identities = 31/152 (20%), Positives = 55/152 (36%), Gaps = 2/152 (1%) Query: 9 LNELMNMEYVAQYHYMQAAAWAASHNLDGCCNFLLKHAMEEHSHVIRIFKHLTDLGVEAK 68 N + E+ A Y+ A+ W ++ +G ++L + EE H + + + Sbjct: 9 FNRQVTQEFTASQVYLSASIWFDQNDWEGMAAYMLAESAEEREHGLGFVDFANKRNIPIE 68 Query: 69 FSSIEAPVISA--NDVEGLFSLMYEHENKVTIAYDDAIETILAEKDHQTFQFLQWFVKEQ 126 ++ APV A + E ++ + E E T + + E D FL F +Q Sbjct: 69 LQAVPAPVSCAEWSSPEDVWQSILELEQANTRSLLNLAEAASTCHDFAVMAFLNPFHLQQ 128 Query: 127 HEEMALFRRILDKIRLIGSGPHSRYMFDLEIE 158 E IL K+ P D+ Sbjct: 129 VNEEDKIGSILAKVTDENRTPGLLRSLDVVSF 160 >1krq_A Ferritin; H-chain like four-helix bundle, metal binding protein; 2.70A {Campylobacter jejuni} SCOP: a.25.1.1 Length = 167 Score = 118 bits (296), Expect = 9e-28 Identities = 58/153 (37%), Positives = 86/153 (56%) Query: 9 LNELMNMEYVAQYHYMQAAAWAASHNLDGCCNFLLKHAMEEHSHVIRIFKHLTDLGVEAK 68 LNE +N E A Y+ ++W ++LDG FL HA EE H ++ +L + + Sbjct: 10 LNEQINKEMYAANLYLSMSSWCYENSLDGAGAFLFAHASEESDHAKKLITYLNETDSHVE 69 Query: 69 FSSIEAPVISANDVEGLFSLMYEHENKVTIAYDDAIETILAEKDHQTFQFLQWFVKEQHE 128 ++ P + + +F YEHE +T + + +E +L KD+ TF FLQW+V EQHE Sbjct: 70 LQEVKQPEQNFKSLLDVFEKTYEHEQFITKSINTLVEHMLTHKDYSTFNFLQWYVSEQHE 129 Query: 129 EMALFRRILDKIRLIGSGPHSRYMFDLEIEKIA 161 E ALFR I+DKI+LIG + Y+ D I+ IA Sbjct: 130 EEALFRGIVDKIKLIGEHGNGLYLADQYIKNIA 162 >1vlg_A Ferritin; TM1128, structural genomics, JCSG, protein structure initiative, PSI, joint center for structural genomics; 2.00A {Thermotoga maritima MSB8} SCOP: a.25.1.1 PDB: 1z4a_A* Length = 176 Score = 113 bits (284), Expect = 2e-26 Identities = 43/151 (28%), Positives = 74/151 (49%) Query: 9 LNELMNMEYVAQYHYMQAAAWAASHNLDGCCNFLLKHAMEEHSHVIRIFKHLTDLGVEAK 68 LN+ +N E + Y Y+ A + + G +++ K A EE +H ++ ++++ + G + Sbjct: 24 LNDQLNREIYSSYLYLSMATYFDAEGFKGFAHWMKKQAQEELTHAMKFYEYIYERGGRVE 83 Query: 69 FSSIEAPVISANDVEGLFSLMYEHENKVTIAYDDAIETILAEKDHQTFQFLQWFVKEQHE 128 +IE P + N ++ F +HE VT + + +E EKDH T FL+WFV EQ E Sbjct: 84 LEAIEKPPSNWNGIKDAFEAALKHEEFVTQSIYNILELASEEKDHATVSFLKWFVDEQVE 143 Query: 129 EMALFRRILDKIRLIGSGPHSRYMFDLEIEK 159 E R ILD + + D + + Sbjct: 144 EEDQVREILDLLEKANGQMSVIFQLDRYLGQ 174 >1s3q_A Ferritin; ferroxidase, four helix bundle, iron storage, metal binding protein; 2.10A {Archaeoglobus fulgidus} SCOP: a.25.1.1 PDB: 1sq3_A Length = 173 Score = 112 bits (280), Expect = 6e-26 Identities = 49/149 (32%), Positives = 76/149 (51%) Query: 9 LNELMNMEYVAQYHYMQAAAWAASHNLDGCCNFLLKHAMEEHSHVIRIFKHLTDLGVEAK 68 LN +N E + Y Y+ A++ S L G N++ EE H +++F +++ G K Sbjct: 12 LNRQINAEIYSAYLYLSMASYFDSIGLKGFSNWMRVQWQEELMHAMKMFDFVSERGGRVK 71 Query: 69 FSSIEAPVISANDVEGLFSLMYEHENKVTIAYDDAIETILAEKDHQTFQFLQWFVKEQHE 128 ++E P + F +YEHE VT + +E + EKD T+ FLQW+V EQ E Sbjct: 72 LYAVEEPPSEWDSPLAAFEHVYEHEVNVTKRIHELVEMAMQEKDFATYNFLQWYVAEQVE 131 Query: 129 EMALFRRILDKIRLIGSGPHSRYMFDLEI 157 E A I++K+RLIG + D E+ Sbjct: 132 EEASALDIVEKLRLIGEDKRALLFLDKEL 160 >3a68_A Sferh-4, ferritin-4, chloroplastic; 4-helix bundle, iron storage, CAGE-like protein, plant, iron, metal-binding, oxidoreductase, plastid; 1.80A {Glycine max} PDB: 3a9q_A Length = 212 Score = 110 bits (277), Expect = 1e-25 Identities = 34/159 (21%), Positives = 58/159 (36%), Gaps = 9/159 (5%) Query: 9 LNELMNMEYVAQYHYMQAAAWAASH--NLDGCCNFLLKHAMEEHSHVIRIFKHLTDLGVE 66 +NE +N+EY Y Y A+ L G F + + EE H ++ ++ G + Sbjct: 49 VNEQINVEYNVSYVYHAMFAYFDRDNVALRGLAKFFKESSEEEREHAEKLMEYQNKRGGK 108 Query: 67 AKFSSIEAPV-----ISANDVEGLFSLMYEHENKVTIAYDDAIETILAEKDHQTFQFLQW 121 K SI P+ D L E + D Q F++ Sbjct: 109 VKLQSIVMPLSDFDHADKGDALHAMELALSLEKLTNEKLLNLHSVATKNGDVQLADFVET 168 Query: 122 -FVKEQHEEMALFRRILDKIRLIGSGPHSRYMFDLEIEK 159 ++ EQ E + + ++R +G G H + FD + Sbjct: 169 EYLGEQVEAIKRISEYVAQLRRVGKG-HGVWHFDQMLLH 206 >3ka8_A Ferritin, middle subunit; iron storage, DIIRON, iron, metal-binding, oxidoreductase; 1.35A {Rana catesbeiana} PDB: 3ka9_A 3ka3_A 1mfr_A 3ka4_A 3ka6_A 1bg7_A Length = 176 Score = 96.6 bits (240), Expect = 2e-21 Identities = 31/160 (19%), Positives = 58/160 (36%), Gaps = 6/160 (3%) Query: 9 LNELMNMEYVAQYHYMQAAAWAAS--HNLDGCCNFLLKHAMEEHSHVIRIFKHLTDLGVE 66 +N ++N+E A Y Y A+ L F +H+ EE H + K+ G Sbjct: 17 VNRMLNLELYASYTYSSMYAFFDRDDVALHNVAEFFKEHSHEEREHAEKFMKYQNKRGGR 76 Query: 67 AKFSSIEAPVISA-NDVEGLFSLMYEHENKVTIAYDDAIETILAEKDHQTFQFLQ-WFVK 124 I+ P + + E V A D + + D FL+ +++ Sbjct: 77 VVLQDIKKPERDEWGNTLEAMQAALQLEKTVNQALLDLHKLATDKVDPHLCDFLESEYLE 136 Query: 125 EQHEEMALFRRILDKIRLIGSGP--HSRYMFDLEIEKIAN 162 EQ + + + ++ +G Y+FD K ++ Sbjct: 137 EQVKHIKRIGDFITNLKRLGLPENGMGEYLFDKHSVKESS 176 >3kxu_A Ferritin; iron storage protein, disorder, iron, metal binding protein; 1.85A {Homo sapiens} PDB: 3hx2_A 3hx5_A 3hx7_A Length = 191 Score = 91.2 bits (226), Expect = 9e-20 Identities = 31/152 (20%), Positives = 52/152 (34%), Gaps = 6/152 (3%) Query: 9 LNELMNMEYVAQYHYMQAAAWAASHN--LDGCCNFLLKHAMEEHSHVIRIFKHLTDLGVE 66 +N L+N+ A Y Y+ + + L+G +F + A E+ R+ K G Sbjct: 17 VNSLVNLYLQASYTYLSLGFYFDRDDVALEGVSHFFRELAEEKREGYERLLKMQNQRGGR 76 Query: 67 AKFSSIEAPVISA-NDVEGLFSLMYEHENKVTIAYDDAIETILAEKDHQTFQFLQW-FVK 124 A F I+ P E K+ A D A D FL+ F+ Sbjct: 77 ALFQDIKKPAEDEWGKTPDAMKAAMALEKKLNQALLDLHALGSARTDPHLCDFLETHFLD 136 Query: 125 EQHEEMALFRRILDKIRLIGSGPHS--RYMFD 154 E+ + + L + +G Y+ Sbjct: 137 EEVKLIKKMGDHLTNLHRLGGPEAGLGEYLSS 168 >3fvb_A Bacterioferritin; niaid, ssgcid, decode, structural genomics, seattle structural genomics center for infectious disease; HET: HEM; 1.81A {Brucella melitensis biovar ABORTUS2308} Length = 182 Score = 91.2 bits (226), Expect = 9e-20 Identities = 21/136 (15%), Positives = 45/136 (33%), Gaps = 1/136 (0%) Query: 9 LNELMNMEYVAQYHYMQAAAWAASHNLDGCCNFLLKHAMEEHSHVIRIFKHLTDLGVEAK 68 LNE + +E A Y + ++EE H ++ + L Sbjct: 32 LNEALFLELGAVNQYWLHYRLLNDWGYTRLAKKEREESIEEMHHADKLIDRIIFLEGFPN 91 Query: 69 FSSIEAPVISANDVEGLFSLMYEHENKVTIAYDDAIETILAEKDHQTFQFLQWFVKEQHE 128 ++ I +V+ + + E +Y ++ E D+ + Q + ++ Sbjct: 92 LQTVSPLRIG-QNVKEVLEADLKGEYDARASYKESREICDKLGDYVSKQLFDELLADEEG 150 Query: 129 EMALFRRILDKIRLIG 144 + LD + IG Sbjct: 151 HIDFLETQLDLLAKIG 166 >1nfv_A Bacterioferritin; 24 subunits in the active molecule, DIIRON centre, HAEM Fe-coproporphyrin III cofactor; HET: FEC; 1.95A {Desulfovibrio desulfuricans} SCOP: a.25.1.1 PDB: 1nf6_A* 1nf4_A* Length = 179 Score = 87.5 bits (216), Expect = 2e-18 Identities = 24/136 (17%), Positives = 49/136 (36%), Gaps = 1/136 (0%) Query: 9 LNELMNMEYVAQYHYMQAAAWAASHNLDGCCNFLLKHAMEEHSHVIRIFKHLTDLGVEAK 68 LN+ ME A + YM + + A++E H + + +LG E Sbjct: 16 LNKARAMELHAIHQYMNQHYSLDDMDYGELAANMKLIAIDEMRHAENFAERIKELGGEPT 75 Query: 69 FSSIEAPVISANDVEGLFSLMYEHENKVTIAYDDAIETILAEKDHQTFQFLQWFVKEQHE 128 V V ++ + E+ AY ++ + D T + + ++E+ Sbjct: 76 TQKEGKVVTG-QAVPVIYESDADQEDATIEAYSQFLKVCKEQGDIVTARLFERIIEEEQA 134 Query: 129 EMALFRRILDKIRLIG 144 + + I I+ +G Sbjct: 135 HLTYYENIGSHIKNLG 150 Score = 25.1 bits (54), Expect = 8.2 Identities = 6/54 (11%), Positives = 12/54 (22%) Query: 8 VLNELMNMEYVAQYHYMQAAAWAASHNLDGCCNFLLKHAMEEHSHVIRIFKHLT 61 + + E Y Q + EE +H+ + Sbjct: 91 IYESDADQEDATIEAYSQFLKVCKEQGDIVTARLFERIIEEEQAHLTYYENIGS 144 >1z6o_A Ferritin light chain; metal binding protein, iron storage; 1.91A {Trichoplusia NI} SCOP: a.25.1.1 Length = 212 Score = 84.3 bits (208), Expect = 1e-17 Identities = 28/170 (16%), Positives = 60/170 (35%), Gaps = 19/170 (11%) Query: 9 LNELMNMEYVAQYHYMQAAAWAASH--NLDGCCNFLLKHAMEEHSHVIRIFKHLTDLGVE 66 L + Y Y+ +AA+ ++ N G K + E S I I KH+T G + Sbjct: 41 LQAYAKLHLERSYDYLLSAAYFNNYQTNRAGFSKLFKKLSDEAWSKTIDIIKHVTKRGDK 100 Query: 67 AKFSSIEAP------VISANDVEGLFSLMYEHENKVTIA----YDDAIETILAEKDHQTF 116 F + N + + + ++ + +A D + Sbjct: 101 MNFDQHSTMKTERKNYTAENHELEALAKALDTQKELAERAFYIHREATRNSQHLHDPEIA 160 Query: 117 QFLQW-FVKEQHEEMALFRRILDKIRLIGSGPHSR------YMFDLEIEK 159 Q+L+ F+++ E++ ++ + + Y+FD ++K Sbjct: 161 QYLEEEFIEDHAEKIRTLAGHTSDLKKFITANNGHDLSLALYVFDEYLQK 210 >2wtl_A Bacterioferritin, BFR; metal binding protein, bacterioferritin A, heme, iron, biliverdin, iron storage, metal-binding; HET: UNL; 2.59A {Mycobacterium tuberculosis} PDB: 3bkn_A* Length = 173 Score = 83.9 bits (207), Expect = 2e-17 Identities = 22/136 (16%), Positives = 41/136 (30%), Gaps = 1/136 (0%) Query: 9 LNELMNMEYVAQYHYMQAAAWAASHNLDGCCNFLLKHAMEEHSHVIRIFKHLTDLGVEAK 68 LNE + E A Y + + + +E H I + L Sbjct: 15 LNEQLTSELTAINQYFLHSKMQDNWGFTELAAHTRAESFDEMRHAEEITDRILLLDGLPN 74 Query: 69 FSSIEAPVISANDVEGLFSLMYEHENKVTIAYDDAIETILAEKDHQTFQFLQWFVKEQHE 128 + I + I + F E V I ++D + L+ V ++ E Sbjct: 75 YQRIGSLRIG-QTLREQFEADLAIEYDVLNRLKPGIVMCREKQDTTSAVLLEKIVADEEE 133 Query: 129 EMALFRRILDKIRLIG 144 + L+ + +G Sbjct: 134 HIDYLETQLELMDKLG 149 >1z6o_M Ferritin heavy chain; metal binding protein, iron storage; 1.91A {Trichoplusia NI} SCOP: a.25.1.1 Length = 191 Score = 83.1 bits (205), Expect = 2e-17 Identities = 24/162 (14%), Positives = 55/162 (33%), Gaps = 13/162 (8%) Query: 9 LNELMNMEYVAQYHYMQAAAWAASH--NLDGCCNFLLKHAMEEHSHVIRIFKHLTDLGVE 66 + + + ME A Y+ A + N G A EE H +++ ++L G Sbjct: 25 MRQQIQMEVGASLQYLAMGAHFSKDVVNRPGFAQLFFDAASEEREHAMKLIEYLLMRGEL 84 Query: 67 AKFSSIEAPVISA-----NDVEGLFSLMYEHENKVTIAYDDAIETILAEKDHQTFQFLQW 121 S V E+ VT + + I+ + + + + + Sbjct: 85 TNDVSSLLQVRPPTRSSWKGGVEALEHALSMESDVTKSIRNVIKACEDDSEFNDYHLVDY 144 Query: 122 ----FVKEQHEEMALFRRILDKIRLIGSGPHS--RYMFDLEI 157 F++EQ++ ++ + + ++FD ++ Sbjct: 145 LTGDFLEEQYKGQRDLAGKASTLKKLMDRHEALGEFIFDKKL 186 >1jgc_A Bacterioferritin, BFR; iron storage protein, metal binding protein; HET: HEM; 2.60A {Rhodobacter capsulatus} SCOP: a.25.1.1 Length = 161 Score = 83.1 bits (205), Expect = 2e-17 Identities = 17/136 (12%), Positives = 36/136 (26%), Gaps = 1/136 (0%) Query: 9 LNELMNMEYVAQYHYMQAAAWAASHNLDGCCNFLLKHAMEEHSHVIRIFKHLTDLGVEAK 68 LN + E A Y L + ++EE H +I + L Sbjct: 11 LNAALRSELTAISQYWVHFRLQEDWGLAKMAKKSREESIEEMGHADKIIARILFLEGHPN 70 Query: 69 FSSIEAPVISANDVEGLFSLMYEHENKVTIAYDDAIETILAEKDHQTFQFLQWFVKEQHE 128 ++ I E+ Y +A + D + + + ++ Sbjct: 71 LQKLDPLRIG-EGPRETLECDLAGEHDALKLYREARDYCAEVGDIVSKNIFESLITDEEG 129 Query: 129 EMALFRRILDKIRLIG 144 + + +G Sbjct: 130 HVDFLETQISLYDRLG 145 >2cih_A Ferritin heavy chain; apoferritin, ferroxidase, DI-iron non-heme protein, iron storage, iron, metal-binding, oxidoreductase, phosphorylation; 1.5A {Homo sapiens} PDB: 2chi_A 2cei_A 1fha_A 2fha_A 2cn7_A 2iu2_A 2clu_A 2cn6_A 3erz_A 3es3_A 2z6m_A 1r03_A Length = 183 Score = 82.8 bits (204), Expect = 3e-17 Identities = 25/152 (16%), Positives = 53/152 (34%), Gaps = 6/152 (3%) Query: 9 LNELMNMEYVAQYHYMQAAAWAASH--NLDGCCNFLLKHAMEEHSHVIRIFKHLTDLGVE 66 +N +N++ A Y Y+ + + L + L + EE H ++ K G Sbjct: 21 INRQINLDLYASYVYLSMSYYFDRDDVALKNFAKYFLHQSHEEREHAEKLMKLQNQRGGR 80 Query: 67 AKFSSIEAPVISA-NDVEGLFSLMYEHENKVTIAYDDAIETILAEKDHQTFQFLQW-FVK 124 I+ P E V + + + + D F++ ++ Sbjct: 81 IFLQDIQKPDCDDWESGLNAMECALHLEKNVNQSLLELHKLATDKNDPHLCDFIETHYLN 140 Query: 125 EQHEEMALFRRILDKIRLIGSGP--HSRYMFD 154 EQ + + + +R +G+ + Y+FD Sbjct: 141 EQVKAIKELGDHVTNLRKMGAPESGLAEYLFD 172 >3gvy_A Bacterioferritin; iron storage, DI-iron, ferroxidase activity, heme, metal binding protein; HET: HEM; 2.80A {Rhodobacter sphaeroides 2} Length = 161 Score = 80.1 bits (197), Expect = 2e-16 Identities = 19/136 (13%), Positives = 42/136 (30%), Gaps = 1/136 (0%) Query: 9 LNELMNMEYVAQYHYMQAAAWAASHNLDGCCNFLLKHAMEEHSHVIRIFKHLTDLGVEAK 68 LN + E A Y + K ++EE H ++ + + LG Sbjct: 11 LNAALRSELTAVSQYWLHYRLQEDWGFGSIAHKSRKESIEEMHHADKLIQRIIFLGGHPN 70 Query: 69 FSSIEAPVISANDVEGLFSLMYEHENKVTIAYDDAIETILAEKDHQTFQFLQWFVKEQHE 128 + I + E+ Y +A + +D+ + + + ++ Sbjct: 71 LQRLNPLRIG-QTLRETLDADLAAEHDARTLYIEARDHCEKVRDYPSKMLFEELIADEEG 129 Query: 129 EMALFRRILDKIRLIG 144 + +D + IG Sbjct: 130 HIDYLETQIDLMGSIG 145 >2fkz_A Bacterioferritin; ferroxidase, DIIRON site, iron transport, metal binding protein; HET: HEM; 2.00A {Azotobacter vinelandii} SCOP: a.25.1.1 PDB: 2fl0_A* 1sof_A* Length = 155 Score = 79.7 bits (196), Expect = 3e-16 Identities = 22/136 (16%), Positives = 48/136 (35%), Gaps = 1/136 (0%) Query: 9 LNELMNMEYVAQYHYMQAAAWAASHNLDGCCNFLLKHAMEEHSHVIRIFKHLTDLGVEAK 68 LN+++ E +A Y A L+ +++E H ++ K + L Sbjct: 11 LNKILGNELIAINQYFLHARMYEDWGLEKLGKHEYHESIDEMKHADKLIKRILFLEGLPN 70 Query: 69 FSSIEAPVISANDVEGLFSLMYEHENKVTIAYDDAIETILAEKDHQTFQFLQWFVKEQHE 128 + +I + + + E AI + D+ + + L+ ++ + + Sbjct: 71 LQELGKLLIG-EHTKEMLECDLKLEQAGLPDLKAAIAYCESVGDYASRELLEDILESEED 129 Query: 129 EMALFRRILDKIRLIG 144 + LD I IG Sbjct: 130 HIDWLETQLDLIDKIG 145 >1rcd_A L ferritin; iron storage; 2.00A {Rana catesbeiana} SCOP: a.25.1.1 PDB: 1rcg_A 1rci_A 1rcc_A 1rce_A Length = 173 Score = 79.3 bits (195), Expect = 4e-16 Identities = 26/152 (17%), Positives = 55/152 (36%), Gaps = 6/152 (3%) Query: 9 LNELMNMEYVAQYHYMQAAAWAASH--NLDGCCNFLLKHAMEEHSHVIRIFKHLTDLGVE 66 LN +N+++ + Y Y+ A++ L F + + EE H ++ ++ G Sbjct: 17 LNRTVNLKFHSSYVYLSMASYFNRDDVALSNFAKFFRERSEEEKEHAEKLIEYQNQRGGR 76 Query: 67 AKFSSIEAPVISA-NDVEGLFSLMYEHENKVTIAYDDAIETILAEKDHQTFQFLQ-WFVK 124 S+E P + + + V A D + D FL+ ++ Sbjct: 77 VFLQSVEKPERDDWANGLEALQTALKLQKSVNQALLDLHAVAADKSDPHMTDFLESPYLS 136 Query: 125 EQHEEMALFRRILDKIRLIGSGPHS--RYMFD 154 E E + + ++ + S Y+F+ Sbjct: 137 ESVETIKKLGDHITSLKKLWSSHPGMAEYLFN 168 >2v2p_A Ferritin light chain; metal transport, iron, haemin, apoferritin, iron storage, metal-binding; 1.15A {Equus caballus} PDB: 2v2r_A 2v2m_A 2v2l_A 2v2s_A 2v2o_A 2v2n_A 2za6_A 2v2j_A 2v2i_A 2z5p_A 1dat_A 2g4h_A 1aew_A 2zg9_X 2zg8_X 3fi6_A 2w0o_A 1hrs_A* 1ier_A 1ies_A ... Length = 174 Score = 77.8 bits (191), Expect = 1e-15 Identities = 30/152 (19%), Positives = 54/152 (35%), Gaps = 6/152 (3%) Query: 9 LNELMNMEYVAQYHYMQAAAWAASH--NLDGCCNFLLKHAMEEHSHVIRIFKHLTDLGVE 66 +N L+N+ A Y Y+ + L+G C+F + A ++ R+ K G Sbjct: 16 VNRLVNLYLRASYTYLSLGFYFDRDDVALEGVCHFFRQLAQQKMQGAERLLKMQNQRGGR 75 Query: 67 AKFSSIEAPVI-SANDVEGLFSLMYEHENKVTIAYDDAIETILAEKDHQTFQFLQW-FVK 124 A F ++ P E + A D A+ D FL+ F+ Sbjct: 76 ALFQDLQKPSQDEWGTTPDAMKAAIVLEKSLNQALLDLHALGSAQADPHLCDFLESHFLD 135 Query: 125 EQHEEMALFRRILDKIRLIGSGP--HSRYMFD 154 E+ + + L I+ + Y+F+ Sbjct: 136 EEVKLIKKMGDHLTNIQRLVGSQAGLGEYLFE 167 >1bg7_A Ferritin; iron storage; 1.85A {Rana catesbeiana} SCOP: a.25.1.1 PDB: 1mfr_A Length = 176 Score = 77.0 bits (189), Expect = 2e-15 Identities = 29/152 (19%), Positives = 54/152 (35%), Gaps = 6/152 (3%) Query: 9 LNELMNMEYVAQYHYMQAAAWAASH--NLDGCCNFLLKHAMEEHSHVIRIFKHLTDLGVE 66 +N ++NME A Y Y+ A + L F + + EE H ++ K G Sbjct: 17 INRMVNMELYASYTYLSMAFYFDRDDIALHNVAKFFKEQSHEEREHAEKLMKDQNKRGGR 76 Query: 67 AKFSSIEAPVISA-NDVEGLFSLMYEHENKVTIAYDDAIETILAEKDHQTFQFLQ-WFVK 124 ++ P + + E V A D + + D FL+ + + Sbjct: 77 IVLQDVQKPERDEWGNTLEAMQAALQLEKTVNQALLDLHKVGSDKVDPHLCDFLETEYPE 136 Query: 125 EQHEEMALFRRILDKIRLIGSGP--HSRYMFD 154 EQ + + + ++ +G Y+FD Sbjct: 137 EQVKSIKQLGDYITNLKRLGLPQNGMGEYLFD 168 >3e2c_A Bacterioferritin; DIIRON site, iron storage, metal-binding, heme, iron, oxidoreductase; HET: HEM; 1.80A {Escherichia coli} PDB: 2vxi_A* 1bfr_A* 1bcf_A* 2htn_A* 3e1j_A* 3e1l_A* 3e1m_A* 3e1n_A* 3e1o_A* 3e1p_A* 3ghq_A* 3e1q_A* Length = 158 Score = 71.6 bits (175), Expect = 8e-14 Identities = 26/137 (18%), Positives = 49/137 (35%), Gaps = 1/137 (0%) Query: 8 VLNELMNMEYVAQYHYMQAAAWAASHNLDGCCNFLLKHAMEEHSHVIRIFKHLTDLGVEA 67 LN+L+ E VA Y A + L + +++E H R + + L Sbjct: 10 YLNKLLGNELVAINQYFLHARMFKNWGLKRLNDVEYHESIDEMKHADRYIERILFLEGLP 69 Query: 68 KFSSIEAPVISANDVEGLFSLMYEHENKVTIAYDDAIETILAEKDHQTFQFLQWFVKEQH 127 + I DVE + E +AI + D+ + + ++++ Sbjct: 70 NLQDLGKLNIG-EDVEEMLRSDLALELDGAKNLREAIGYADSVHDYVSRDMMIEILRDER 128 Query: 128 EEMALFRRILDKIRLIG 144 + R LD I+ +G Sbjct: 129 GHIDWLRTELDLIQKMG 145 >1j30_A 144AA long hypothetical rubrerythrin; sulerythrin, sulfolobus tokodaii strain 7, four-helix bundle, domain swapping; 1.70A {Sulfolobus tokodaii str} SCOP: a.25.1.1 Length = 144 Score = 70.4 bits (172), Expect = 2e-13 Identities = 17/133 (12%), Positives = 39/133 (29%), Gaps = 4/133 (3%) Query: 9 LNELMNMEYVAQYHYMQAAAWAASHNLDGCCNFLLKHAMEEHSHVIRIFKHLTDLGVEAK 68 L + E +A Y+ A A L A E +H + G+ Sbjct: 13 LKQGFIGESMANRRYLYFAKRADEEGYPEIAGLLRSIAEGETAHAFGHLDFIRQGGLTD- 71 Query: 69 FSSIEAPVISANDVEGLFSLMYEHENKVTIAYDDAIETILAEKDHQTFQFLQWFVKEQHE 128 + + S + + T Y + E + ++ + + + Sbjct: 72 ---PATDKPIGTLEQMIESAIAGETYEWTQMYPGFAKVAREEGFPEVAEWFETLARAEKS 128 Query: 129 EMALFRRILDKIR 141 F+ +L +++ Sbjct: 129 HAEKFQNVLKQLK 141 >2qqy_A Sigma B operon; dodecameric alpha-helical, ferritin fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Bacillus anthracis str} Length = 149 Score = 69.8 bits (170), Expect = 3e-13 Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 2/136 (1%) Query: 9 LNELMNMEYVAQYHYMQAAAWAASHNLDGCCNFLLKHAMEEHSHVIRIFKHLTDLGVEAK 68 LNE + EY A Y AA + F +E H + + + + LG Sbjct: 15 LNEDLAGEYSAIIMYNHNAATVSGIYRQVLKPFFESEISDEQGHALYLAEKIKTLGGTPT 74 Query: 69 FSSIEAPVISANDVEGLFSLMYEHENKVTIAYDDAIETILAEKDHQTFQFLQWFVKEQHE 128 + DV + + E + Y+ E + L+ + ++ Sbjct: 75 TIPLRVKQA--EDVREMLEYARQSEYETIKRYEKRKEQAANLNMTELVVKLEDMIADETN 132 Query: 129 EMALFRRILDKIRLIG 144 M R+L+ ++ Sbjct: 133 HMEELDRLLNDKAMVL 148 >2vzb_A Putative bacterioferritin-related protein; DPS, DPSL, iron, oxidative stress, metal transport; 2.30A {Bacteroides fragilis} Length = 170 Score = 60.6 bits (146), Expect = 2e-10 Identities = 26/144 (18%), Positives = 46/144 (31%), Gaps = 9/144 (6%) Query: 9 LNELMNMEYVAQYHYMQAAAWAASHNLDGCCNFLLKHAMEEHSHVIRIFKHLTDLGVEA- 67 LN ++ E++A Y Y A +HA EE H I + +L Sbjct: 22 LNAALSEEWLAYYQYWVGALVVEGAMRADVQGEFEEHAEEERHHAQLIADRIIELEGVPV 81 Query: 68 -------KFSSIEAPVISANDVEGLFSLMYEHENKVTIAYDDAIETILAEKDHQTFQFLQ 120 + + + +A D L + E + Y + KD+ T + Sbjct: 82 LDPKKWFELARCKYDSPTAFDSVSLLNQNVSSERCAILRYQEIANFT-NGKDYTTCDIAK 140 Query: 121 WFVKEQHEEMALFRRILDKIRLIG 144 + E+ E + L I + Sbjct: 141 HILAEEEEHEQDLQDYLTDIARMK 164 >2oh3_A Rubrerythrin, COG1633: uncharacterized conserved protein; ZP_00055496.1, structural genomics; HET: MSE PGE; 2.00A {Magnetospirillum magnetotacticum ms-1} SCOP: a.25.1.8 Length = 167 Score = 59.2 bits (142), Expect = 4e-10 Identities = 23/152 (15%), Positives = 42/152 (27%), Gaps = 14/152 (9%) Query: 1 MTNTRDRVLNELMNMEYVAQYHYMQAAAWAASHNLDGCCNFLLKHAMEEHSHVIRIFKHL 60 M T L + +E A Y++ A +HN A H I + Sbjct: 2 MGYTLAEFLAHAIALETEAAERYVELADMMEAHNNLDTATVFRDMARFSTLHGDEIKQRS 61 Query: 61 TDLGVEAKFSSI-----------EAPVISANDVEGLFSLMYEHENKVTIAYDDAIETILA 109 L + S E + ++E + Y +A Sbjct: 62 RALELPKLMSWQYRWKTPPEVGDENDIHYLMTPYHALRYARDNEIRGMEYYKEAAANS-- 119 Query: 110 EKDHQTFQFLQWFVKEQHEEMALFRRILDKIR 141 D + + F E+ E + + ++K Sbjct: 120 -ADPEVKRLGADFAAEEAEHVVALDKWIEKTP 150 Score = 24.9 bits (53), Expect = 8.3 Identities = 17/78 (21%), Positives = 28/78 (35%), Gaps = 4/78 (5%) Query: 4 TRDRVLNELMNMEYVAQYHYMQAAAWAASHNLDGCCNFLLKHAMEEHSHVIRIFKHLTDL 63 T L + E +Y +AAA +A + A EE HV+ + K + Sbjct: 93 TPYHALRYARDNEIRGMEYYKEAAANSADPEV---KRLGADFAAEEAEHVVALDKWIEKT 149 Query: 64 GVEAKFSSIEA-PVISAN 80 + S +A P + Sbjct: 150 PRPSITWSEDADPAQCVD 167 >1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubredoxin-like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A Length = 191 Score = 58.5 bits (141), Expect = 6e-10 Identities = 20/132 (15%), Positives = 35/132 (26%), Gaps = 2/132 (1%) Query: 9 LNELMNMEYVAQYHYMQAAAWAASHNLDGCCNFLLKHAMEEHSHVIRIFKHLTDLGVEAK 68 + E A+ Y A + + A +E H R+FK L +E Sbjct: 13 ILTAFAGESQARNRYNYFGGQAKKDGFVQISDIFAETADQEREHAKRLFKFLEGGDLEIV 72 Query: 69 FSSIEAPVISANDVEGLFSLMYEHENKVTIAYDDAIETILAEKDHQTFQFLQWFVKEQHE 128 + I A+ L + ++ T Y E + + + Sbjct: 73 AAF--PAGIIADTHANLIASAAGEHHEYTEMYPSFARIAREEGYEEIARVFASIAVAEEF 130 Query: 129 EMALFRRILDKI 140 F I Sbjct: 131 HEKRFLDFARNI 142 >2clb_A DPS-like protein; DI-iron carboxylate, hypothetical protein, bacterioferritin, hydrogen peroxide, metal binding protein, archaea; 2.4A {Sulfolobus solfataricus} Length = 188 Score = 54.8 bits (131), Expect = 9e-09 Identities = 22/141 (15%), Positives = 47/141 (33%), Gaps = 11/141 (7%) Query: 7 RVLNELMNMEYVAQYHYMQAAAWAASHNLDGCCNFLLKHAMEEHSHVIRIFKHLTDLG-- 64 L + E+ Y+Y +G +E+ H + + + +LG Sbjct: 28 DKLVKATAAEFTTYYYYTILRMHLTGMEGEGLKEIAEDARLEDRLHFELMTQRIYELGGG 87 Query: 65 --------VEAKFSSIEAPVISANDVEGLFSLMYEHENKVTIAYDDAIETILAEKDHQTF 116 + S + D + + ++ E E + + + KD +T+ Sbjct: 88 LPRDIRQLADISACSDAYLPENWKDPKEILKVLLEAEQCAIRTWKEVC-DMTYGKDPRTY 146 Query: 117 QFLQWFVKEQHEEMALFRRIL 137 Q ++E+ E A F +L Sbjct: 147 DLAQRILQEEIEHEAWFLELL 167 >1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIRON center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A Length = 202 Score = 53.5 bits (128), Expect = 2e-08 Identities = 18/132 (13%), Positives = 36/132 (27%), Gaps = 1/132 (0%) Query: 9 LNELMNMEYVAQYHYMQAAAWAASHNLDGCCNFLLKHAMEEHSHVIRIFKHLTDLGVEAK 68 L + E A Y A A + A E H+ + + ++ + Sbjct: 33 LKAAIAGETGAHAKYTAFAKAAREQGYEQIARLFEATAAAELIHIGLEYALVAEMEPGYE 92 Query: 69 FSSIEAPVISANDVEGLFSLMYEHENKVTIAYDDAIETILAEKDHQTFQFLQWFVKEQHE 128 ++ AP + D L S + + Y I E + + + Sbjct: 93 KPTVAAPSAYSCD-LNLISGANGEIYETSDMYPAFIRKAQEEGNSKAVHVFTRAKLAESV 151 Query: 129 EMALFRRILDKI 140 + + I Sbjct: 152 HAERYLAAYNDI 163 >1nnq_A Rubrerythrin; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics, secsg; 2.35A {Pyrococcus furiosus} SCOP: a.25.1.1 g.41.5.1 PDB: 2hr5_A Length = 171 Score = 41.2 bits (96), Expect = 1e-04 Identities = 21/132 (15%), Positives = 37/132 (28%), Gaps = 15/132 (11%) Query: 9 LNELMNMEYVAQYHYMQAAAWAASHNLDGCCNFLLKHAMEEHSHVIRIFKHLTDLGVEAK 68 L E E +A Y+ A A A E H F L LG Sbjct: 12 LEEAFAGESMAHMRYLIFAEKAEQEGFPNIAKLFRAIAYAEFVHAKNHFIALGKLG---- 67 Query: 69 FSSIEAPVISANDVEGLFSLMYEHENKVTIAYDDAIETILAEKDHQTFQFLQWFVKEQHE 128 E L + +V Y + + + + + + ++ + Sbjct: 68 -----------KTPENLQMGIEGETFEVEEMYPVYNKAAEFQGEKEAVRTTHYALEAEKI 116 Query: 129 EMALFRRILDKI 140 L+R+ +K Sbjct: 117 HAELYRKAKEKA 128 >2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 1688 Score = 31.7 bits (71), Expect = 0.077 Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 10/60 (16%) Query: 55 RIFKHLTDL--GVEAKFSSIEAPVI-------SANDVEGLFSLMYEHENKVTIAYD-DAI 104 R K +TD + AK+ + + +I S DVE L +Y+ E + +D DAI Sbjct: 510 RFSKQVTDYYQSIYAKYGAKGSTLIVVPFNQGSKQDVEALIEFIYDTEKNGGLGWDLDAI 569 >2fzf_A Hypothetical protein; structural genomics, southeast collaboratory for structural genomics, secsg, protein structure initiative, PSI; 2.70A {Pyrococcus furiosus} SCOP: a.25.1.1 Length = 175 Score = 31.0 bits (69), Expect = 0.13 Identities = 17/146 (11%), Positives = 42/146 (28%), Gaps = 17/146 (11%) Query: 6 DRVLNELMNMEYVAQYHYMQAAAWAASHNLDGCCNFLLKHAMEEHSHVIRIFKHLTDLGV 65 + +L + E A+ Y A ++ + A EE H + K + + Sbjct: 22 EELLGMAIKAEIGAREFYKSLAEKI---KIEALKEKINWLAEEEKKHEALLRKLYSQMFP 78 Query: 66 EAKFSSIE-----------APVISANDVEGLFSLMYEHENKVTIAYDDAIETILAEKDHQ 114 + + + D+ L + E Y E + K+ + Sbjct: 79 GKEVVFPKEHIGPELQPVARELEKVQDIIDLIRWAMKAEEIAAEFYLKLEEMV---KEEE 135 Query: 115 TFQFLQWFVKEQHEEMALFRRILDKI 140 + +++ + R + + Sbjct: 136 KKRLMRYLADMERGHYYTLRAEYELL 161 >2ib0_A Conserved hypothetical alanine rich protein; 4-helix bundle, structural genomics, PSI-2, protein structure initiative; 2.00A {Mycobacterium tuberculosis} SCOP: a.25.1.9 Length = 170 Score = 29.2 bits (65), Expect = 0.41 Identities = 19/106 (17%), Positives = 33/106 (31%), Gaps = 11/106 (10%) Query: 6 DRVLNELMNMEYVAQYHYMQAAAWAASHNLDGCCNFLLKHAMEEHSHVIRIFKHLTDLGV 65 + L + + +E+ Y Y +A + + + + L+ GV Sbjct: 23 NAALCDALAVEHATIYGYGIVSALSPPGVNF----LVADALKQHRHRRDDVIVMLSARGV 78 Query: 66 E----AKFSSIEAPVISANDVEGLFSLMYEHENKVTIAYDDAIETI 107 A + V SA D L M EN A+ +E Sbjct: 79 TAPIAAAGYQLPMQVSSAADAARLAVRM---ENDGATAWRAVVEHA 121 >1vjx_A Putative ferritin-like DIIRON-carboxylate protein TM1526; structural genomics, JCSG, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: a.25.1.1 Length = 157 Score = 28.7 bits (63), Expect = 0.59 Identities = 14/141 (9%), Positives = 39/141 (27%), Gaps = 14/141 (9%) Query: 8 VLNELMNMEYVAQYHYMQAAAWAASHNLDGCCNFLLKHAMEEHSHVIRIFKHLTDLGVEA 67 +L + +E + Y + + L+ A +E H K + Sbjct: 18 ILTVAIRLEEEGERFYRELSEHFNGEIKK----TFLELADQERIHAEIFRKMSDQENWDE 73 Query: 68 KFSSIEA-------PVISANDVEGLFSLMYEHENKVTI---AYDDAIETILAEKDHQTFQ 117 S + P S +L + +++ + E + + Sbjct: 74 VDSYLAGYAFYEVFPDTSEILRRKDLTLKEVLDIAISVEKDSIILYYELKDGLVNSDAQK 133 Query: 118 FLQWFVKEQHEEMALFRRILD 138 ++ + ++ E + + Sbjct: 134 TVKKIIDQEKEHLRKLLEMKR 154 >1g8m_A Aicar transformylase-IMP cyclohydrolase; homodimer, 2 functional domains, IMPCH domain = alpha/beta/alpha; HET: G; 1.75A {Gallus gallus} SCOP: c.24.1.3 c.97.1.4 PDB: 1thz_A* 2b1g_A* 2b1i_A* 2iu0_A* 2iu3_A* 1m9n_A* 1oz0_A* 1pkx_A* 1p4r_A* 1pl0_A* Length = 593 Score = 28.2 bits (62), Expect = 0.85 Identities = 9/97 (9%), Positives = 23/97 (23%), Gaps = 8/97 (8%) Query: 13 MNMEYVAQYHYMQAAAWAASHNL---DGCCNFLLKHAMEEHSHVIRIFKHLTDLGVEAKF 69 + NL + + FKH++ G Sbjct: 219 QLYTTRPKLPLTVVNGSPGFINLCDALNAWQLVKELKQALGIPAAASFKHVSPAGA---- 274 Query: 70 SSIEAPVISANDVEGLFSLMYEHENKVTIAYDDAIET 106 ++ P+ + +++ + AY + Sbjct: 275 -AVGIPLSEEEAQVCMVHDLHKTLTPLASAYARSRGA 310 >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 28.4 bits (63), Expect = 0.91 Identities = 22/105 (20%), Positives = 29/105 (27%), Gaps = 33/105 (31%) Query: 50 HSH-----VIRIFKHLTDLGVEAKFSSIEAPVISANDVEGLFSLMYEHENKVTIAYDDAI 104 HSH I K L V I+ PV D L L + + + Sbjct: 428 HSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVL---SGSIS----ERIV 480 Query: 105 ETILAEKDHQTFQFLQWFVKEQHEEMAL-FR--RILDKIRLIGSG 146 + I+ W E F+ ILD G G Sbjct: 481 DCIIRLPVK-------W-------ETTTQFKATHILD----FGPG 507 >1v97_A XD, xanthine dehydrogenase; molybdopterin, FYX-051, reaction intermediate, oxidoreductase; HET: MTE FAD FYX; 1.94A {Bos taurus} SCOP: a.56.1.1 d.15.4.2 d.41.1.1 d.87.2.1 d.133.1.1 d.145.1.3 PDB: 1fo4_A* 1vdv_A* 3bdj_A* 1n5x_A* 2ckj_A* 2e1q_A* 2e3t_A* 1wyg_A* 3b9j_C* 1fiq_C* 3eub_C* 3etr_C* 1fiq_B* 3b9j_B* 3etr_B* 3eub_B* 3b9j_A* 1fiq_A* 3eub_A* 3etr_A* Length = 1332 Score = 27.7 bits (61), Expect = 1.3 Identities = 15/87 (17%), Positives = 34/87 (39%), Gaps = 11/87 (12%) Query: 61 TDLGVEAKFSSIEAPV-ISANDVEGLFSLMYEHENKVTIAYDDAIETILAEKDHQTFQFL 119 T++G+E KF + P+ I + L ++ ++ A + + L Sbjct: 262 TEIGIEMKFKNQLFPMIICPAWIPELNAV-EHGPEGISFG---AACAL-----SSVEKTL 312 Query: 120 QWFVKEQHEEMA-LFRRILDKIRLIGS 145 V + + +FR +L+++R Sbjct: 313 LEAVAKLPTQKTEVFRGVLEQLRWFAG 339 >3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 3hb9_A* Length = 1150 Score = 25.7 bits (56), Expect = 4.8 Identities = 13/69 (18%), Positives = 24/69 (34%), Gaps = 2/69 (2%) Query: 26 AAAWAASHNLDGCCNFLLKHAMEEHSHVIRIFKHLTDLGVEAKFSSIEAPVISANDVEGL 85 + A + D + ++ + + V RIF L V+ + EA + EG Sbjct: 616 SNAVGYKNYPDNVIHKFVQESAKAGIDVFRIFDSLNW--VDQMKVANEAVQEAGKISEGT 673 Query: 86 FSLMYEHEN 94 + N Sbjct: 674 ICYTGDILN 682 >2vxx_A Starvation induced DNA binding protein; stress response protein, DPS, oxidation, iron binding, ferroxidase centre; HET: PG4; 2.4A {Synechococcus elongatus} Length = 192 Score = 25.8 bits (56), Expect = 5.0 Identities = 15/138 (10%), Positives = 34/138 (24%), Gaps = 19/138 (13%) Query: 9 LNELMNMEYVAQYHYMQAAAWAASHNLDGCCNFLLKHAMEEH-----------SHVIRIF 57 +N L+ Y + + ++G + L ++ + Sbjct: 33 MNRLLASFQALYLQYQKHH-F----VVEGAEFYPLHQFFQDCYEQVQDHVHALGERLNGL 87 Query: 58 KHLTDLGVE--AKFSSIEAPVISANDVEGLFSLMYEHENKVTIAYDDAIETILAEKDHQT 115 + G + A A + + S + E + + D T Sbjct: 88 GGVPVAGFQQLAALCCFTPEPEGAFNCRQMLSNDLQAEQAIIGVLRQQATQAESLGDRAT 147 Query: 116 FQFLQWFVKEQHEEMALF 133 + + EE A Sbjct: 148 AYLYDQIL-LKTEERAYH 164 >3hq1_A 2-isopropylmalate synthase; LEUA, mycobacterium tuberculosis inhibition, bromopyruvate, amino-acid biosynthesis; HET: FLC; 1.70A {Mycobacterium tuberculosis H37RV} PDB: 1sr9_A 3hpz_A 3hps_A* 3fig_A 3hpx_A Length = 644 Score = 25.1 bits (54), Expect = 7.2 Identities = 9/32 (28%), Positives = 13/32 (40%), Gaps = 6/32 (18%) Query: 54 IRIFKHLTDLGVEAKFSSIEA--PVISANDVE 83 R+F L +G + IE P S D + Sbjct: 96 RRMFDLLVRMGYK----EIEVGFPSASQTDFD 123 >3fay_A P195, RAS GTPase-activating-like protein iqgap1; all alpha, calmodulin-binding, cell membrane, membrane, phosphoprotein, membrane protein; 2.20A {Homo sapiens} Length = 387 Score = 25.3 bits (55), Expect = 7.5 Identities = 13/81 (16%), Positives = 35/81 (43%), Gaps = 11/81 (13%) Query: 41 FLLKHAMEEHSHVIRIFKHLTDLG-VEAKFSSIEAP----------VISANDVEGLFSLM 89 + ++ + + R F+ D+ ++ KF+ E IS ++ +L+ Sbjct: 292 IINEYLSQSYQKFRRFFQTACDVPELQDKFNVDEYSDLVTLTKPVIYISIGEIINTHTLL 351 Query: 90 YEHENKVTIAYDDAIETILAE 110 +H++ + ++D I +L + Sbjct: 352 LDHQDAIAPEHNDPIHELLDD 372 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.323 0.134 0.396 Gapped Lambda K H 0.267 0.0493 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 1,420,649 Number of extensions: 61356 Number of successful extensions: 346 Number of sequences better than 10.0: 1 Number of HSP's gapped: 297 Number of HSP's successfully gapped: 66 Length of query: 164 Length of database: 5,693,230 Length adjustment: 85 Effective length of query: 79 Effective length of database: 3,632,490 Effective search space: 286966710 Effective search space used: 286966710 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 53 (24.8 bits)