BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780720|ref|YP_003065133.1| Ferroxidase [Candidatus Liberibacter asiaticus str. psy62] (164 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780720|ref|YP_003065133.1| Ferroxidase [Candidatus Liberibacter asiaticus str. psy62] Length = 164 Score = 343 bits (881), Expect = 7e-97, Method: Compositional matrix adjust. Identities = 164/164 (100%), Positives = 164/164 (100%) Query: 1 MTNTRDRVLNELMNMEYVAQYHYMQAAAWAASHNLDGCCNFLLKHAMEEHSHVIRIFKHL 60 MTNTRDRVLNELMNMEYVAQYHYMQAAAWAASHNLDGCCNFLLKHAMEEHSHVIRIFKHL Sbjct: 1 MTNTRDRVLNELMNMEYVAQYHYMQAAAWAASHNLDGCCNFLLKHAMEEHSHVIRIFKHL 60 Query: 61 TDLGVEAKFSSIEAPVISANDVEGLFSLMYEHENKVTIAYDDAIETILAEKDHQTFQFLQ 120 TDLGVEAKFSSIEAPVISANDVEGLFSLMYEHENKVTIAYDDAIETILAEKDHQTFQFLQ Sbjct: 61 TDLGVEAKFSSIEAPVISANDVEGLFSLMYEHENKVTIAYDDAIETILAEKDHQTFQFLQ 120 Query: 121 WFVKEQHEEMALFRRILDKIRLIGSGPHSRYMFDLEIEKIANKS 164 WFVKEQHEEMALFRRILDKIRLIGSGPHSRYMFDLEIEKIANKS Sbjct: 121 WFVKEQHEEMALFRRILDKIRLIGSGPHSRYMFDLEIEKIANKS 164 >gi|254780190|ref|YP_003064603.1| fumarate hydratase [Candidatus Liberibacter asiaticus str. psy62] Length = 463 Score = 24.3 bits (51), Expect = 1.1, Method: Compositional matrix adjust. Identities = 11/19 (57%), Positives = 14/19 (73%), Gaps = 1/19 (5%) Query: 131 ALFRRILDKIRLIGSGPHS 149 ALF+ I + IR +GSGP S Sbjct: 287 ALFK-IANDIRFLGSGPRS 304 >gi|254780964|ref|YP_003065377.1| ribonucleotide-diphosphate reductase subunit beta [Candidatus Liberibacter asiaticus str. psy62] Length = 352 Score = 23.5 bits (49), Expect = 2.3, Method: Compositional matrix adjust. Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 7/47 (14%) Query: 38 CCNFLLKHAMEE--HSHVIRIFKHLTDLGV-EAKFSSI--EAPVISA 79 C +LL+ A EE HSH + +T LG+ E + ++ E P I+A Sbjct: 113 CRQYLLRQAFEEAVHSHTFQYI--ITSLGLDEGELFNMYREVPSITA 157 >gi|254780845|ref|YP_003065258.1| ribonucleotide-diphosphate reductase subunit beta [Candidatus Liberibacter asiaticus str. psy62] Length = 352 Score = 23.5 bits (49), Expect = 2.3, Method: Compositional matrix adjust. Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 7/47 (14%) Query: 38 CCNFLLKHAMEE--HSHVIRIFKHLTDLGV-EAKFSSI--EAPVISA 79 C +LL+ A EE HSH + +T LG+ E + ++ E P I+A Sbjct: 113 CRQYLLRQAFEEAVHSHTFQYI--ITSLGLDEGELFNMYREVPSITA 157 >537021.9.peg.74_1 Length = 196 Score = 23.1 bits (48), Expect = 2.9, Method: Compositional matrix adjust. Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 7/47 (14%) Query: 38 CCNFLLKHAMEE--HSHVIRIFKHLTDLGV-EAKFSSI--EAPVISA 79 C +LL+ A EE HSH + +T LG+ E + ++ E P I+A Sbjct: 113 CRQYLLRQAFEEAVHSHTFQYI--ITSLGLDEGELFNMYREVPSITA 157 >gi|254780314|ref|YP_003064727.1| outer membrane protein [Candidatus Liberibacter asiaticus str. psy62] Length = 351 Score = 22.7 bits (47), Expect = 3.8, Method: Compositional matrix adjust. Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 8/54 (14%) Query: 79 ANDVEGLFSLMYEHENKVTIAYDDAIETILAEKDHQTFQFLQWFVKEQHEEMAL 132 A DV G+ K+ +A DD + AE D + F K EE++L Sbjct: 96 AGDVTGVA--------KLKLAVDDVLSMQFAESDVRALAFTVPSSKLSVEELSL 141 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.323 0.134 0.396 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 100,902 Number of Sequences: 1233 Number of extensions: 3757 Number of successful extensions: 11 Number of sequences better than 100.0: 7 Number of HSP's better than 100.0 without gapping: 7 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 4 Number of HSP's gapped (non-prelim): 7 length of query: 164 length of database: 328,796 effective HSP length: 68 effective length of query: 96 effective length of database: 244,952 effective search space: 23515392 effective search space used: 23515392 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 35 (18.1 bits)