HHsearch alignment for GI: 254780721 and conserved domain: COG1955
>COG1955 FlaJ Archaeal flagella assembly protein J [Cell motility and secretion / Intracellular trafficking and secretion].
Probab=98.87 E-value=6e-06 Score=57.48 Aligned_cols=136 Identities=15% Similarity=0.058 Sum_probs=116.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH-CCCCHHHHHHHH
Q ss_conf 9999999999999999999999999999999749968999999998407787789999999999996-599989999999
Q gi|254780721|r 164 PSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELS-FLPNRQVAFENF 242 (329)
Q Consensus 164 P~~~l~~~~~~r~~~i~~~lP~~ld~l~~~~~aG~~l~~Al~~va~e~~~~~~~l~~e~~~~~~~~~-~G~~~~~Al~~~ 242 (329)
T Consensus 35 ~~l~~~~~~d~k~~~in~~l~f~lt~m~~LsTs~i~r~~If~~ls~--~~eyg~~~~~f~kI~~L~~~Wgy~~a~Ac~~i 112 (527)
T COG1955 35 AVLYPIISRDSKKNRINSDLLFFLTYMASLSTSDIPRDDIFRILSR--KEEYGPLRKEFRKIYNLVDKWGYSLAEACRFI 112 (527)
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCC--HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_conf 9999986526777521312699999999996069988999999654--15212489999999999998684568999999
Q ss_pred HHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 98639958999999999999719958999999999999999999999998433369999
Q gi|254780721|r 243 YNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVP 301 (329)
Q Consensus 243 a~r~~~~~~~~~~~~l~~~~~~G~~l~~~L~~~a~~~r~~~~~~~e~~a~~~~~k~~~~ 301 (329)
T Consensus 113 A~k~~~~~l~dfL~Rla~ai~sGe~~~eFl~~E~~~~~~~y~~~Yer~LeSl~~~~diY 171 (527)
T COG1955 113 AKKTPSEILADFLDRLAYALDSGEDLKEFLEREQDTTMDEYETEYERALESLDVWKDIY 171 (527)
T ss_pred HHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 86096799999999998774258737999999999999999999999998899999999