HHsearch alignment for GI: 254780721 and conserved domain: PRK06041
>PRK06041 flagellar assembly protein J; Reviewed.
Probab=99.49 E-value=8.3e-10 Score=82.99 Aligned_cols=138 Identities=13% Similarity=0.036 Sum_probs=122.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH-CCCCHHHHHHHH
Q ss_conf 9999999999999999999999999999999749968999999998407787789999999999996-599989999999
Q gi|254780721|r 164 PSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELS-FLPNRQVAFENF 242 (329)
Q Consensus 164 P~~~l~~~~~~r~~~i~~~lP~~ld~l~~~~~aG~~l~~Al~~va~e~~~~~~~l~~e~~~~~~~~~-~G~~~~~Al~~~ 242 (329)
T Consensus 57 a~~yP~~~~~~~~~~I~~~m~~~iT~M~~LSt~~~~r~~if~~Ls~~-~ey~G~la~e~~kI~~Lv~~w~~sl~eA~r~~ 135 (547)
T PRK06041 57 AIGYPKIKLDSKRLKINNDLLFFITYMAVLSTADLDRDEIFRYLSEE-KEYLGQLSKEFKKIYVLVKKWNYSLAEACRFL 135 (547)
T ss_pred HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHC-CHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_conf 99730888754899888630899999999982699989999998843-12206889999999999998681689999999
Q ss_pred HHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 986399589999999999997199589999999999999999999999984333699999
Q gi|254780721|r 243 YNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPM 302 (329)
Q Consensus 243 a~r~~~~~~~~~~~~l~~~~~~G~~l~~~L~~~a~~~r~~~~~~~e~~a~~~~~k~~~~~ 302 (329)
T Consensus 136 A~rtpS~~~~dFLdRlA~si~SG~~~~eFL~~Eq~~~~~~y~~~ye~~LesLd~~~e~Yv 195 (547)
T PRK06041 136 AKRTPSDRLSDFLDRLAYSIDSGEPLKEFLKQEQDTVMEIYKTFYERALESLDKWKDAYV 195 (547)
T ss_pred HHCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 762997799999999998886699879999999999999999999999999999999999