HHsearch alignment for GI: 254780721 and conserved domain: PRK06041

>PRK06041 flagellar assembly protein J; Reviewed.
Probab=99.49  E-value=8.3e-10  Score=82.99  Aligned_cols=138  Identities=13%  Similarity=0.036  Sum_probs=122.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH-CCCCHHHHHHHH
Q ss_conf             9999999999999999999999999999999749968999999998407787789999999999996-599989999999
Q gi|254780721|r  164 PSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELS-FLPNRQVAFENF  242 (329)
Q Consensus       164 P~~~l~~~~~~r~~~i~~~lP~~ld~l~~~~~aG~~l~~Al~~va~e~~~~~~~l~~e~~~~~~~~~-~G~~~~~Al~~~  242 (329)
T Consensus        57 a~~yP~~~~~~~~~~I~~~m~~~iT~M~~LSt~~~~r~~if~~Ls~~-~ey~G~la~e~~kI~~Lv~~w~~sl~eA~r~~  135 (547)
T PRK06041         57 AIGYPKIKLDSKRLKINNDLLFFITYMAVLSTADLDRDEIFRYLSEE-KEYLGQLSKEFKKIYVLVKKWNYSLAEACRFL  135 (547)
T ss_pred             HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHC-CHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_conf             99730888754899888630899999999982699989999998843-12206889999999999998681689999999


Q ss_pred             HHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             986399589999999999997199589999999999999999999999984333699999
Q gi|254780721|r  243 YNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPM  302 (329)
Q Consensus       243 a~r~~~~~~~~~~~~l~~~~~~G~~l~~~L~~~a~~~r~~~~~~~e~~a~~~~~k~~~~~  302 (329)
T Consensus       136 A~rtpS~~~~dFLdRlA~si~SG~~~~eFL~~Eq~~~~~~y~~~ye~~LesLd~~~e~Yv  195 (547)
T PRK06041        136 AKRTPSDRLSDFLDRLAYSIDSGEPLKEFLKQEQDTVMEIYKTFYERALESLDKWKDAYV  195 (547)
T ss_pred             HHCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             762997799999999998886699879999999999999999999999999999999999