HHsearch alignment for GI: 254780721 and conserved domain: PRK08307

>PRK08307 stage III sporulation protein SpoAB; Provisional.
Probab=95.67  E-value=0.15  Score=28.31  Aligned_cols=106  Identities=21%  Similarity=0.215  Sum_probs=64.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Q ss_conf             99999999999999999999999999999999999999999999-74996899999999840778778999999999999
Q gi|254780721|r  151 GAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICV-ESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAEL  229 (329)
Q Consensus       151 ~~~~~~~~~g~~~P~~~l~~~~~~r~~~i~~~lP~~ld~l~~~~-~aG~~l~~Al~~va~e~~~~~~~l~~e~~~~~~~~  229 (329)
T Consensus         9 LIi~s~~~~G~~-----~a~~~~~R~~qL-~~l~~~l~~L~~EI~Y~~tpL~eal~~i~~~~~---~~~~~~f~~~a~~L   79 (172)
T PRK08307          9 LIVAASTWIGFL-----YAERYKERPRQL-RELKAALQSLEAEIMYGHTPLPEALENIAKKSP---KPISTLFQRFAERL   79 (172)
T ss_pred             HHHHHHHHHHHH-----HHHHHHHHHHHH-HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCC---CHHHHHHHHHHHHH
T ss_conf             999998899999-----999999999999-999999999999998808989999999987557---33999999999998


Q ss_pred             HC--CCCHHHHHHHHHHHC----C-----CHHHHHHHHHHHHHHHCC
Q ss_conf             65--999899999999863----9-----958999999999999719
Q gi|254780721|r  230 SF--LPNRQVAFENFYNRT----Q-----MDCVRNATQALIQSDRYG  265 (329)
Q Consensus       230 ~~--G~~~~~Al~~~a~r~----~-----~~~~~~~~~~l~~~~~~G  265 (329)
T Consensus        80 ~~~~g~s~~e~W~~~~~~~~~~~~L~~~d~eiL~~lG~~LG~~D~e~  126 (172)
T PRK08307         80 EKGEVETVYEAWEKSLKENWKNTALKKEDYEILLQFGKTLGQSDREG  126 (172)
T ss_pred             HHCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHH
T ss_conf             73789989999999999875447999999999999999877578999