HHsearch alignment for GI: 254780721 and conserved domain: PRK08307
>PRK08307 stage III sporulation protein SpoAB; Provisional.
Probab=95.67 E-value=0.15 Score=28.31 Aligned_cols=106 Identities=21% Similarity=0.215 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999999999999999999999-74996899999999840778778999999999999
Q gi|254780721|r 151 GAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICV-ESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAEL 229 (329)
Q Consensus 151 ~~~~~~~~~g~~~P~~~l~~~~~~r~~~i~~~lP~~ld~l~~~~-~aG~~l~~Al~~va~e~~~~~~~l~~e~~~~~~~~ 229 (329)
T Consensus 9 LIi~s~~~~G~~-----~a~~~~~R~~qL-~~l~~~l~~L~~EI~Y~~tpL~eal~~i~~~~~---~~~~~~f~~~a~~L 79 (172)
T PRK08307 9 LIVAASTWIGFL-----YAERYKERPRQL-RELKAALQSLEAEIMYGHTPLPEALENIAKKSP---KPISTLFQRFAERL 79 (172)
T ss_pred HHHHHHHHHHHH-----HHHHHHHHHHHH-HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCC---CHHHHHHHHHHHHH
T ss_conf 999998899999-----999999999999-999999999999998808989999999987557---33999999999998
Q ss_pred HC--CCCHHHHHHHHHHHC----C-----CHHHHHHHHHHHHHHHCC
Q ss_conf 65--999899999999863----9-----958999999999999719
Q gi|254780721|r 230 SF--LPNRQVAFENFYNRT----Q-----MDCVRNATQALIQSDRYG 265 (329)
Q Consensus 230 ~~--G~~~~~Al~~~a~r~----~-----~~~~~~~~~~l~~~~~~G 265 (329)
T Consensus 80 ~~~~g~s~~e~W~~~~~~~~~~~~L~~~d~eiL~~lG~~LG~~D~e~ 126 (172)
T PRK08307 80 EKGEVETVYEAWEKSLKENWKNTALKKEDYEILLQFGKTLGQSDREG 126 (172)
T ss_pred HHCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHH
T ss_conf 73789989999999999875447999999999999999877578999