HHsearch alignment for GI: 254780721 and conserved domain: TIGR02120
>TIGR02120 GspF general secretion pathway protein F; InterPro: IPR011850 This membrane protein is a component of the terminal branch complex of the general secretion pathway (GSP), also known as the "Type II" secretion pathway. The GSP transports proteins (generally virulence-associated cell wall hydrolases) across the outer membrase of the bacterial cell. Transport across the inner membrane is often, but not exclusively handled by the Sec system. GspF nearly always clusters with other GSP subunits. However, some genes from Xylella and Xanthomonas strains are excluded from this entry due to excessive divergence.; GO: 0008565 protein transporter activity, 0015628 protein secretion by the type II secretion system, 0015627 type II protein secretion system complex.
Probab=98.82 E-value=3.5e-07 Score=65.62 Aligned_cols=134 Identities=16% Similarity=0.067 Sum_probs=103.1
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHH------------HHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 99999999999-9999999999999------------9999999999749968999999998407787789999999999
Q gi|254780721|r 161 FCAPSVWISNL-VQKRQSSIKRAWP------------DALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIA 227 (329)
Q Consensus 161 ~~~P~~~l~~~-~~~r~~~i~~~lP------------~~ld~l~~~~~aG~~l~~Al~~va~e~~~~~~~l~~e~~~~~~ 227 (329)
T Consensus 246 ~~l~~~~Lr~p~~r~~~dr~LLr~PviG~L~r~l~~ARfArTL~iL~~SGVPlL~AL~~a~~~~~N--~~lr~~v~~a~~ 323 (414)
T TIGR02120 246 VVLFRRLLRDPAFRLRFDRRLLRLPVIGRLVRGLNTARFARTLSILLSSGVPLLRALQIARETLTN--RALRAAVEDAAA 323 (414)
T ss_pred HHHHHHHHCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
T ss_conf 999999843898750454878320245689999999999999999986018999999999999875--999999999999
Q ss_pred HHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 996599989999999986399589999999999997199589999999999999999999999984333699999
Q gi|254780721|r 228 ELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPM 302 (329)
Q Consensus 228 ~~~~G~~~~~Al~~~a~r~~~~~~~~~~~~l~~~~~~G~~l~~~L~~~a~~~r~~~~~~~e~~a~~~~~k~~~~~ 302 (329)
T Consensus 324 ~VREG~sLs~AL~------~~~~FPP~l~hmiasGE~sG~L~~ML~RAAd~~ere~e~~~~~~~~LLEPlLIv~M 392 (414)
T TIGR02120 324 RVREGGSLSRALR------ASKLFPPLLVHMIASGEKSGQLETMLERAADNQEREFERRVATLLALLEPLLIVVM 392 (414)
T ss_pred HHHCCHHHHHHHH------CCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 7225547898862------15664379989987724789807789998638899999999999998879999999