HHsearch alignment for GI: 254780721 and conserved domain: pfam09548

>pfam09548 Spore_III_AB Stage III sporulation protein AB (spore_III_AB). SpoIIIAB represents the stage III sporulation protein AB, which is encoded in a spore formation operon: spoIIIAABCDEFGH that is under sigma G regulation. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=96.70  E-value=0.046  Score=31.78  Aligned_cols=106  Identities=23%  Similarity=0.250  Sum_probs=65.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Q ss_conf             99999999999999999999999999999999999999999999-74996899999999840778778999999999999
Q gi|254780721|r  151 GAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICV-ESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAEL  229 (329)
Q Consensus       151 ~~~~~~~~~g~~~P~~~l~~~~~~r~~~i~~~lP~~ld~l~~~~-~aG~~l~~Al~~va~e~~~~~~~l~~e~~~~~~~~  229 (329)
T Consensus         7 LIi~s~~~~G~~-----~a~~~~~R~~~L~-~l~~~l~~L~~EI~Y~~tpL~eal~~i~~~~~---~~~~~~f~~~a~~L   77 (170)
T pfam09548         7 LIILSSTLIGFL-----YAKRYKERPKQLR-ELINALQSLEAEISYGATPLPEALERIASKSE---KPVSELFERAAERL   77 (170)
T ss_pred             HHHHHHHHHHHH-----HHHHHHHHHHHHH-HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCC---CHHHHHHHHHHHHH
T ss_conf             999987799999-----9999999999999-99999999999998818989999999987557---43999999999988


Q ss_pred             H--CCCCHHHHHHHHHHH----C-----CCHHHHHHHHHHHHHHHCC
Q ss_conf             6--599989999999986----3-----9958999999999999719
Q gi|254780721|r  230 S--FLPNRQVAFENFYNR----T-----QMDCVRNATQALIQSDRYG  265 (329)
Q Consensus       230 ~--~G~~~~~Al~~~a~r----~-----~~~~~~~~~~~l~~~~~~G  265 (329)
T Consensus        78 ~~~~g~s~~e~w~~~~~~~~~~~~L~~~d~eiL~~lg~~LG~~D~~~  124 (170)
T pfam09548        78 EKNEGITAYEAWEEALEELWKETALKKEDIEILLNLGKSLGQSDREG  124 (170)
T ss_pred             HCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHH
T ss_conf             61789989999999999876537999999999999999877567899