HHsearch alignment for GI: 254780721 and conserved domain: pfam09548
>pfam09548 Spore_III_AB Stage III sporulation protein AB (spore_III_AB). SpoIIIAB represents the stage III sporulation protein AB, which is encoded in a spore formation operon: spoIIIAABCDEFGH that is under sigma G regulation. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=96.70 E-value=0.046 Score=31.78 Aligned_cols=106 Identities=23% Similarity=0.250 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999999999999999999999-74996899999999840778778999999999999
Q gi|254780721|r 151 GAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICV-ESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAEL 229 (329)
Q Consensus 151 ~~~~~~~~~g~~~P~~~l~~~~~~r~~~i~~~lP~~ld~l~~~~-~aG~~l~~Al~~va~e~~~~~~~l~~e~~~~~~~~ 229 (329)
T Consensus 7 LIi~s~~~~G~~-----~a~~~~~R~~~L~-~l~~~l~~L~~EI~Y~~tpL~eal~~i~~~~~---~~~~~~f~~~a~~L 77 (170)
T pfam09548 7 LIILSSTLIGFL-----YAKRYKERPKQLR-ELINALQSLEAEISYGATPLPEALERIASKSE---KPVSELFERAAERL 77 (170)
T ss_pred HHHHHHHHHHHH-----HHHHHHHHHHHHH-HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCC---CHHHHHHHHHHHHH
T ss_conf 999987799999-----9999999999999-99999999999998818989999999987557---43999999999988
Q ss_pred H--CCCCHHHHHHHHHHH----C-----CCHHHHHHHHHHHHHHHCC
Q ss_conf 6--599989999999986----3-----9958999999999999719
Q gi|254780721|r 230 S--FLPNRQVAFENFYNR----T-----QMDCVRNATQALIQSDRYG 265 (329)
Q Consensus 230 ~--~G~~~~~Al~~~a~r----~-----~~~~~~~~~~~l~~~~~~G 265 (329)
T Consensus 78 ~~~~g~s~~e~w~~~~~~~~~~~~L~~~d~eiL~~lg~~LG~~D~~~ 124 (170)
T pfam09548 78 EKNEGITAYEAWEEALEELWKETALKKEDIEILLNLGKSLGQSDREG 124 (170)
T ss_pred HCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHH
T ss_conf 61789989999999999876537999999999999999877567899