Query gi|254780721|ref|YP_003065134.1| pilus component protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 329
No_of_seqs 154 out of 1349
Neff 8.6
Searched_HMMs 23785
Date Tue May 31 15:27:52 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780721.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3c1q_A General secretion pathw 98.7 7.2E-07 3E-11 62.1 12.8 106 181-293 12-117 (123)
2 2whn_A PILC, pilus assembly pr 98.5 2.2E-06 9.3E-11 58.9 10.8 102 181-290 13-114 (116)
3 3few_X Colicin S4; cell lysis, 53.1 8 0.00034 15.5 4.9 14 234-247 350-363 (505)
4 1xkp_A Putative membrane-bound 31.2 17 0.00073 13.3 9.9 107 174-284 123-236 (246)
5 1zmd_A Dihydrolipoyl dehydroge 27.6 20 0.00084 12.9 4.6 49 182-235 424-472 (474)
6 3hsq_A Acyl-[acyl-carrier-prot 22.5 25 0.001 12.3 5.4 47 215-261 203-251 (259)
7 2hl7_A Cytochrome C-type bioge 21.1 26 0.0011 12.1 4.5 37 213-249 39-76 (84)
8 3h74_A Pyridoxal kinase; PSI-I 16.6 33 0.0014 11.4 3.1 47 190-243 221-271 (282)
9 2cr7_A Paired amphipathic heli 15.4 35 0.0015 11.2 5.6 45 181-226 29-73 (80)
10 1xdi_A RV3303C-LPDA; reductase 13.8 39 0.0016 11.0 4.7 64 182-251 422-487 (499)
No 1
>3c1q_A General secretion pathway protein F; type 2 secretion system, T2SS, T4PB, inner membrane, membrane, transmembrane, transport protein; HET: MSE PE5; 1.70A {Vibrio cholerae} PDB: 2vmb_A* 2vma_A*
Probab=98.65 E-value=7.2e-07 Score=62.12 Aligned_cols=106 Identities=14% Similarity=0.165 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf 99999999999999749968999999998407787789999999999996599989999999986399589999999999
Q gi|254780721|r 181 RAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQ 260 (329)
Q Consensus 181 ~~lP~~ld~l~~~~~aG~~l~~Al~~va~e~~~~~~~l~~e~~~~~~~~~~G~~~~~Al~~~a~r~~~~~~~~~~~~l~~ 260 (329)
.++..|...++..+++|+|+.+|++.+++.. .++.+++.+..+..+++.|.++.+|+.......| .+...++.
T Consensus 12 ~~l~~f~~~La~Ll~sGv~l~~aL~~~~~~~--~~~~~~~~~~~i~~~l~~G~~ls~Al~~~~~~f~-----~~~i~mi~ 84 (123)
T 3c1q_A 12 PDLALITRQLATLVQSGMPLEECLRAVAEQS--EKPRIRTMLVAVRAKVTEGYTLSDSLGDYPHVFD-----ELFRSMVA 84 (123)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHHHHTC--SCHHHHHHHHHHHHHHHTTCCHHHHHTTCTTTSC-----HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHC--CCHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCC-----HHHHHHHH
T ss_conf 9999999999999986998999999997144--1289999999999999845539999987545586-----99999999
Q ss_pred HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 997199589999999999999999999999984
Q gi|254780721|r 261 SDRYGTSIGDSLRVLVSETRSERLMEAEKKAAS 293 (329)
Q Consensus 261 ~~~~G~~l~~~L~~~a~~~r~~~~~~~e~~a~~ 293 (329)
+-+.+|++.++|+.+++..+++...+.+.+..+
T Consensus 85 ~GE~sG~L~~~l~~la~~~e~~~~~~~kik~A~ 117 (123)
T 3c1q_A 85 AGEKSGHLDSVLERLADYAENRQKMRSKLQQAS 117 (123)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 998747799999999999999999999999999
No 2
>2whn_A PILC, pilus assembly protein PILC; transport, transmembrane, pilus biogenesis, protein transport; 2.05A {Thermus thermophilus}
Probab=98.45 E-value=2.2e-06 Score=58.91 Aligned_cols=102 Identities=12% Similarity=0.022 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf 99999999999999749968999999998407787789999999999996599989999999986399589999999999
Q gi|254780721|r 181 RAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQ 260 (329)
Q Consensus 181 ~~lP~~ld~l~~~~~aG~~l~~Al~~va~e~~~~~~~l~~e~~~~~~~~~~G~~~~~Al~~~a~r~~~~~~~~~~~~l~~ 260 (329)
.++..|...++..++||+|+.+|++.+++.. .++.+.+.+..+..++..|.++.+|+.+. .-+ | ..++..+..
T Consensus 13 ~~l~~f~~~la~ll~sGi~l~~aL~~~~~~~--~~~~~~~~l~~i~~~l~~G~~ls~al~~~-~~f--~--~~~~~mi~~ 85 (116)
T 2whn_A 13 KDLAIFSRQLATMLGAGLTLLQALAILERQT--ENRKFREILKQVRTDVEGGMAFSEALSKH-KIF--S--RLYVNLVRA 85 (116)
T ss_dssp HHHHHHHHHHHHHHHHTCCHHHHHHHHTTSC--CSHHHHHHHHHHHHHHHTTCCHHHHHHTS-TTS--C--HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH--CCHHHHHHHHHHHHHHHCCCHHHHHHHHH-CCC--C--HHHHHHHHH
T ss_conf 9999999999999996998999999999884--27899999999999987563889998610-479--7--899999999
Q ss_pred HHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 997199589999999999999999999999
Q gi|254780721|r 261 SDRYGTSIGDSLRVLVSETRSERLMEAEKK 290 (329)
Q Consensus 261 ~~~~G~~l~~~L~~~a~~~r~~~~~~~e~~ 290 (329)
++++ |++.++|..+++..+++...+.+.+
T Consensus 86 GE~s-G~L~~~l~~la~~~e~~~~~~~ki~ 114 (116)
T 2whn_A 86 GETS-GGLDLILDRLASFLEKELELRGKIR 114 (116)
T ss_dssp HHHH-TCHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHH-CCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9973-8799999999999999999999876
No 3
>3few_X Colicin S4; cell lysis, Y-RAY, cell killing, immune system; 2.45A {Escherichia coli}
Probab=53.09 E-value=8 Score=15.52 Aligned_cols=14 Identities=7% Similarity=0.010 Sum_probs=5.5
Q ss_pred CHHHHHHHHHHHCC
Q ss_conf 98999999998639
Q gi|254780721|r 234 NRQVAFENFYNRTQ 247 (329)
Q Consensus 234 ~~~~Al~~~a~r~~ 247 (329)
+.++|+..+-+...
T Consensus 350 ~~~dalk~Lek~~~ 363 (505)
T 3few_X 350 SYDDAMASLNKVLS 363 (505)
T ss_dssp CHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHH
T ss_conf 59999999999998
No 4
>1xkp_A Putative membrane-bound YOP targeting protein YOPN; YOPN, type III secretion, SYCN, membrane protein/chaperon complex; HET: MLY; 1.70A {Yersinia pestis} SCOP: a.243.1.3 PDB: 1xl3_A*
Probab=31.22 E-value=17 Score=13.29 Aligned_cols=107 Identities=9% Similarity=0.006 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHH-HHCCCCHHHHHHHHHHHCCCHHHH
Q ss_conf 9999999999999999999997499689999999984077877899999999999-965999899999999863995899
Q gi|254780721|r 174 KRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAE-LSFLPNRQVAFENFYNRTQMDCVR 252 (329)
Q Consensus 174 ~r~~~i~~~lP~~ld~l~~~~~aG~~l~~Al~~va~e~~~~~~~l~~e~~~~~~~-~~~G~~~~~Al~~~a~r~~~~~~~ 252 (329)
.....++..+-+...--...++||.++.-+...-++...... ..++.++++ +....+....+..+-+|++..+..
T Consensus 123 ~~l~~i~~Al~~L~~~~g~~i~aG~Nia~~a~~f~~~~~~~~----~~LR~lYr~~v~~~~~~~~~y~~~~~~yg~~~~~ 198 (246)
T 1xkp_A 123 HLSHLVEQALVSMAEEQGETIVLGARITPEAYRESQSGVNPL----QPLRDTYRDAVMGYQGIYAIWSDLQXRFPNGDID 198 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCCH----HHHHHHHHHHHHCCCCHHHHHHHHHHHCTTSCHH
T ss_pred HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCH----HHHHHHHHHHHCCCCCHHHHHHHHHHHHCHHHHH
T ss_conf 689999999999998457577601976999999886636999----9999999999837875999999999983836899
Q ss_pred HHHHHHHHHHH-----CCCCHHH-HHHHHHHHHHHHHH
Q ss_conf 99999999997-----1995899-99999999999999
Q gi|254780721|r 253 NATQALIQSDR-----YGTSIGD-SLRVLVSETRSERL 284 (329)
Q Consensus 253 ~~~~~l~~~~~-----~G~~l~~-~L~~~a~~~r~~~~ 284 (329)
..+.-|..+.- .|.++.. -|..+-.+++..+.
T Consensus 199 ~~l~fl~~AL~aDl~s~~pSi~~~~L~~lms~l~~l~~ 236 (246)
T 1xkp_A 199 SVILFLQXALSADLQSQQSGSGREXLGIVISDLQXLXE 236 (246)
T ss_dssp HHHHHHHHHHHHHHHHCCCSHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 99999999988777502899987889999998799999
No 5
>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A*
Probab=27.61 E-value=20 Score=12.89 Aligned_cols=49 Identities=16% Similarity=0.092 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCH
Q ss_conf 999999999999974996899999999840778778999999999999659998
Q gi|254780721|r 182 AWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNR 235 (329)
Q Consensus 182 ~lP~~ld~l~~~~~aG~~l~~Al~~va~e~~~~~~~l~~e~~~~~~~~~~G~~~ 235 (329)
+-.+.++.++.+++.|+++++-. ++.-.||.+++.+.......+.|.|+
T Consensus 424 ~a~eli~~~~~ai~~~~t~~~l~-----~~~~~hPt~sE~~~~a~~~~~~~~~~ 472 (474)
T 1zmd_A 424 GAGEMVNEAALALEYGASCEDIA-----RVCHAHPTLSEAFREANLAASFGKSI 472 (474)
T ss_dssp THHHHHHHHHHHHHHTCBHHHHH-----HSCCCTTCTHHHHHHHHHHHHHSCCS
T ss_pred CHHHHHHHHHHHHHCCCCHHHHH-----CCCCCCCCHHHHHHHHHHHHHCCCCC
T ss_conf 99999999999998789699995-----25787999799999999875309999
No 6
>3hsq_A Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase; L.interrogans LPXA, LPXA, LPXA acyltransferase; 2.10A {Leptospira interrogans} PDB: 3i3a_A* 3i3x_A*
Probab=22.52 E-value=25 Score=12.27 Aligned_cols=47 Identities=9% Similarity=0.046 Sum_probs=27.1
Q ss_pred CHHHHHHHHHHHHHH-HCCCCHHHHHHHHHHHCC-CHHHHHHHHHHHHH
Q ss_conf 778999999999999-659998999999998639-95899999999999
Q gi|254780721|r 215 SVPLSEEMLLTIAEL-SFLPNRQVAFENFYNRTQ-MDCVRNATQALIQS 261 (329)
Q Consensus 215 ~~~l~~e~~~~~~~~-~~G~~~~~Al~~~a~r~~-~~~~~~~~~~l~~~ 261 (329)
.++..++++...+.+ +.+.+.+++++++.+..+ .|+++.|+.-+..+
T Consensus 203 ~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~s 251 (259)
T 3hsq_A 203 SPEVRNAIKHAYKVIYHSGISTRKALDELEASGNLIEQVKYIIKFFRDS 251 (259)
T ss_dssp CHHHHHHHHHHHHHHHSSSSCHHHHHHHHHTTCCCCHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHCC
T ss_conf 9999999999999997279989999999986457989999999999738
No 7
>2hl7_A Cytochrome C-type biogenesis protein CCMH; three-helices bundle, oxidoreductase; HET: PG4; 1.70A {Pseudomonas aeruginosa}
Probab=21.12 E-value=26 Score=12.09 Aligned_cols=37 Identities=11% Similarity=0.042 Sum_probs=29.4
Q ss_pred CCCHHHHHHHHHHHHH-HHCCCCHHHHHHHHHHHCCCH
Q ss_conf 7877899999999999-965999899999999863995
Q gi|254780721|r 213 GQSVPLSEEMLLTIAE-LSFLPNRQVAFENFYNRTQMD 249 (329)
Q Consensus 213 ~~~~~l~~e~~~~~~~-~~~G~~~~~Al~~~a~r~~~~ 249 (329)
....+++.+++...++ +..|.+-++-+.-|.+|+|..
T Consensus 39 ~S~s~~A~dmr~~I~~~i~~G~sd~eI~~~l~~rYG~~ 76 (84)
T 2hl7_A 39 DSNAPIAADLRKQIYGQLQQGKSDGEIVDYMVARYGDF 76 (84)
T ss_dssp TCCSHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHTTT
T ss_pred CCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCE
T ss_conf 07878999999999999996999999999999862883
No 8
>3h74_A Pyridoxal kinase; PSI-II, structural genomics, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.30A {Lactobacillus plantarum} PDB: 3hyo_A* 3ibq_A*
Probab=16.62 E-value=33 Score=11.44 Aligned_cols=47 Identities=15% Similarity=0.044 Sum_probs=26.3
Q ss_pred HHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHH----HHHCCCCHHHHHHHHH
Q ss_conf 99999749968999999998407787789999999999----9965999899999999
Q gi|254780721|r 190 LLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIA----ELSFLPNRQVAFENFY 243 (329)
Q Consensus 190 l~~~~~aG~~l~~Al~~va~e~~~~~~~l~~e~~~~~~----~~~~G~~~~~Al~~~a 243 (329)
++..+-.|.++.+|++...+. +.+-++.... +-+.|..+++.|..+.
T Consensus 221 iaa~La~G~~l~~Av~~A~~~-------v~~aI~~s~~~~~~~~~~gv~~e~~l~~l~ 271 (282)
T 3h74_A 221 IAGLLGRGYPLAPTLARANQW-------LNMAVAETIAQNRTDDRQGVALGDLLQAIL 271 (282)
T ss_dssp HHHHHHTTCCHHHHHHHHHHH-------HHHHHHHHHHTTCSCTTSCCCCHHHHHHHH
T ss_pred HHHHHHCCCCHHHHHHHHHHH-------HHHHHHHHHHCCCCCCCCCEEHHHHHHHHH
T ss_conf 999998699999999999999-------999999997569998647662999999999
No 9
>2cr7_A Paired amphipathic helix protein SIN3B; paired amphipathic helix repeat, transcriptional repressor, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rmr_A 2rms_A
Probab=15.39 E-value=35 Score=11.23 Aligned_cols=45 Identities=13% Similarity=0.147 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 9999999999999974996899999999840778778999999999
Q gi|254780721|r 181 RAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTI 226 (329)
Q Consensus 181 ~~lP~~ld~l~~~~~aG~~l~~Al~~va~e~~~~~~~l~~e~~~~~ 226 (329)
...-+|+++|....+...+....+.++.+-+. .+++|-.+|....
T Consensus 29 ~~Y~~FL~il~~~~~~~~~~~~v~~~v~~Lf~-~~pdLl~~F~~FL 73 (80)
T 2cr7_A 29 ATYNGFLEIMKEFKSQSIDTPGVIRRVSQLFH-EHPDLIVGFNAFL 73 (80)
T ss_dssp HHHHHHHHHHHHHHTTSSCHHHHHHHHHHHGG-GCHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHC-CCHHHHHHHHHHC
T ss_conf 99999999999998679989999999999985-3889999999788
No 10
>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unknown function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1
Probab=13.80 E-value=39 Score=10.96 Aligned_cols=64 Identities=9% Similarity=0.013 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHH--HHHHHHHHCCCHHH
Q ss_conf 99999999999997499689999999984077877899999999999965999899--99999986399589
Q gi|254780721|r 182 AWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQV--AFENFYNRTQMDCV 251 (329)
Q Consensus 182 ~lP~~ld~l~~~~~aG~~l~~Al~~va~e~~~~~~~l~~e~~~~~~~~~~G~~~~~--Al~~~a~r~~~~~~ 251 (329)
+-.+.++.++.+++.|+++++-- + +...||.+++.+....+.+.. .+..+ |.++..+..-.|..
T Consensus 422 ~a~elI~~~a~ai~~~~t~~~l~----~-~~~~hPt~sE~i~~aa~~l~~-~~~~~~~~~~~~~~~~~~~~~ 487 (499)
T 1xdi_A 422 IASELILPIAVAVQNRITVNELA----Q-TLAVYPSLSGSITEAARRLMA-HDDLDCTAAQDAAEQLALVPH 487 (499)
T ss_dssp THHHHHHHHHHHHHHTCBHHHHH----T-SBCCSSSTHHHHHHHHHHHCC----------------------
T ss_pred CHHHHHHHHHHHHHCCCCHHHHH----C-CCCCCCCHHHHHHHHHHHHHC-CCCCCCHHHHHHHHHHCCCCC
T ss_conf 89999999999998699899993----4-368797879999999998736-787883032559985366876
Done!