BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= gi|254780721|ref|YP_003065134.1| pilus component protein
[Candidatus Liberibacter asiaticus str. psy62]
(329 letters)
Database: nr
14,124,377 sequences; 4,842,793,630 total letters
Searching..................................................done
Results from round 1
>gi|254780721|ref|YP_003065134.1| pilus component protein [Candidatus Liberibacter asiaticus str.
psy62]
gi|254040398|gb|ACT57194.1| pilus component protein [Candidatus Liberibacter asiaticus str.
psy62]
Length = 329
Score = 662 bits (1708), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 329/329 (100%), Positives = 329/329 (100%)
Query: 1 MPHYFFDLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQI 60
MPHYFFDLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQI
Sbjct: 1 MPHYFFDLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQI 60
Query: 61 TSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVR 120
TSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVR
Sbjct: 61 TSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVR 120
Query: 121 LVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIK 180
LVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIK
Sbjct: 121 LVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIK 180
Query: 181 RAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFE 240
RAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFE
Sbjct: 181 RAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFE 240
Query: 241 NFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV 300
NFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV
Sbjct: 241 NFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV 300
Query: 301 PMIIFFLPVLILVIIGPAILSIIDTMKDH 329
PMIIFFLPVLILVIIGPAILSIIDTMKDH
Sbjct: 301 PMIIFFLPVLILVIIGPAILSIIDTMKDH 329
>gi|315121886|ref|YP_004062375.1| pilus component protein [Candidatus Liberibacter solanacearum
CLso-ZC1]
gi|313495288|gb|ADR51887.1| pilus component protein [Candidatus Liberibacter solanacearum
CLso-ZC1]
Length = 319
Score = 493 bits (1268), Expect = e-137, Method: Compositional matrix adjust.
Identities = 242/320 (75%), Positives = 284/320 (88%), Gaps = 2/320 (0%)
Query: 8 LFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDS 67
+FD+ +AV + T++S+FSLIYAV+IPSLGS ELEKR+KSV++ERE LRKQQ+ L K
Sbjct: 1 MFDSVTIAVVVATSISVFSLIYAVIIPSLGSDELEKRIKSVSIEREELRKQQLARLGK-- 58
Query: 68 ASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIF 127
SS LRT D+ SLR FV+K NLKAILVD+ +V+KLRAAGFRSEY+LNILL++RLV+PII
Sbjct: 59 PSSGLRTHDNMSLRKFVEKFNLKAILVDKPMVDKLRAAGFRSEYALNILLIIRLVLPIIT 118
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
L++GIIWIFG+DKL +Y F R+ VILIGY GF APS++ISNLV KRQ SI+RAWPDAL
Sbjct: 119 LVIGIIWIFGFDKLEQYSFFNRLFVVILIGYAGFYAPSMFISNLVTKRQDSIRRAWPDAL 178
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQ 247
DLLLIC+ESGI++DQALRRVAE++GGQSV LSEE+LLT AELSFL NRQVAFENFYNRTQ
Sbjct: 179 DLLLICIESGIAVDQALRRVAEEVGGQSVALSEELLLTTAELSFLLNRQVAFENFYNRTQ 238
Query: 248 MDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFL 307
MDC+RN QA IQSDRYGTSIGDSLRVLV+ETRSERLMEAEKKAA+L PKLTVPMI+FFL
Sbjct: 239 MDCIRNVMQAFIQSDRYGTSIGDSLRVLVAETRSERLMEAEKKAAALSPKLTVPMILFFL 298
Query: 308 PVLILVIIGPAILSIIDTMK 327
PVL+LVIIGPAIL+I+DTMK
Sbjct: 299 PVLMLVIIGPAILNIMDTMK 318
>gi|327194689|gb|EGE61535.1| pilus component protein [Rhizobium etli CNPAF512]
Length = 328
Score = 348 bits (893), Expect = 7e-94, Method: Compositional matrix adjust.
Identities = 176/311 (56%), Positives = 234/311 (75%), Gaps = 2/311 (0%)
Query: 16 VAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSR--LR 73
+A+ A+++F+ Y + IP G+L KRMK+V+ ERE +R ++ + D + + LR
Sbjct: 16 IAVFVAIAVFATFYTIAIPFFERGDLTKRMKAVSTEREQIRARERARMNADPGAGKASLR 75
Query: 74 TRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGII 133
+++++S+R V++ NL+ LVDEN VNKLRAAGFRSE +LN LV R ++P +FL L
Sbjct: 76 SQNNRSVRQIVERFNLRQALVDENTVNKLRAAGFRSENALNTFLVARFLLPFLFLALAAF 135
Query: 134 WIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLIC 193
W+FG L E +R+ AVI IGYVGF AP+++ISN + KRQ SIKRAWPDALDL+LIC
Sbjct: 136 WVFGLGNLAERGMPIRLFAVIGIGYVGFYAPNIYISNRMGKRQHSIKRAWPDALDLMLIC 195
Query: 194 VESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRN 253
VESGISI+ A+RRV+E++G QS PL+EEM+LT AELSFLP+R+VA EN RTQ++ VR+
Sbjct: 196 VESGISIEAAMRRVSEELGEQSPPLAEEMVLTTAELSFLPDRRVALENLAMRTQIELVRS 255
Query: 254 ATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILV 313
TQALIQ+DRYGT + +LRVL E R ER+ EAEKKAA+L PKLTVPMI+FFLPVLI V
Sbjct: 256 VTQALIQADRYGTPVAQALRVLAQEGRDERMNEAEKKAAALPPKLTVPMILFFLPVLIAV 315
Query: 314 IIGPAILSIID 324
I+GPA + + D
Sbjct: 316 ILGPAGIQVAD 326
>gi|190889886|ref|YP_001976428.1| pilus component protein [Rhizobium etli CIAT 652]
gi|190695165|gb|ACE89250.1| pilus component protein [Rhizobium etli CIAT 652]
Length = 328
Score = 347 bits (891), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 175/311 (56%), Positives = 234/311 (75%), Gaps = 2/311 (0%)
Query: 16 VAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSR--LR 73
+A+ A+++F+ Y + IP G+L KRMK+V+ ERE +R ++ + + + + LR
Sbjct: 16 IAVFVAIAVFATFYTIAIPFFERGDLTKRMKAVSTEREQIRARERARMNANPGAGKASLR 75
Query: 74 TRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGII 133
+++++S+R V++ NL+ LVDEN VNKLRAAGFRSE +LN LV R ++P +FL L
Sbjct: 76 SQNNRSVRQIVERFNLRQALVDENTVNKLRAAGFRSENALNTFLVARFLLPFLFLALAAF 135
Query: 134 WIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLIC 193
W+FG L E +R+ AVI IGYVGF AP+++ISN + KRQ SIKRAWPDALDL+LIC
Sbjct: 136 WVFGLGNLAERGMPIRLFAVIGIGYVGFYAPNIYISNRMGKRQHSIKRAWPDALDLMLIC 195
Query: 194 VESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRN 253
VESGISI+ A+RRV+E++G QS PL+EEM+LT AELSFLP+R+VA EN RTQ++ VR+
Sbjct: 196 VESGISIEAAMRRVSEELGEQSPPLAEEMVLTTAELSFLPDRRVALENLATRTQIELVRS 255
Query: 254 ATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILV 313
TQALIQ+DRYGT + +LRVL E R ER+ EAEKKAA+L PKLTVPMI+FFLPVLI V
Sbjct: 256 VTQALIQADRYGTPVAQALRVLAQEGRDERMNEAEKKAAALPPKLTVPMILFFLPVLIAV 315
Query: 314 IIGPAILSIID 324
I+GPA + + D
Sbjct: 316 ILGPAGIQVAD 326
>gi|209551764|ref|YP_002283681.1| type II secretion system protein [Rhizobium leguminosarum bv.
trifolii WSM2304]
gi|209537520|gb|ACI57455.1| type II secretion system protein [Rhizobium leguminosarum bv.
trifolii WSM2304]
Length = 328
Score = 347 bits (890), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 174/311 (55%), Positives = 235/311 (75%), Gaps = 2/311 (0%)
Query: 16 VAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSR--LR 73
+A+ A+++F+ Y + +P G+L KRMK+V+ ERE +R ++ + ++ + + LR
Sbjct: 16 IALLVAIAVFATFYTIAVPFFERGDLNKRMKAVSTEREQIRARERARMNTETGAGKASLR 75
Query: 74 TRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGII 133
+++++S+R V++ NL+ LVDEN VNKLRAAGFRSE +LN LV R ++P +FL L
Sbjct: 76 SQNNRSVRQIVERFNLRKALVDENTVNKLRAAGFRSENALNTFLVARFLLPFLFLALAAF 135
Query: 134 WIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLIC 193
W+FG L E +R+ AVI IGYVGF AP+++ISN + KRQ SIKRAWPDALDL+LIC
Sbjct: 136 WVFGLGNLPERGMPIRLFAVIGIGYVGFYAPNIYISNRMGKRQHSIKRAWPDALDLMLIC 195
Query: 194 VESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRN 253
VESGISI+ A+RRV+E++G QS PL+EEM+LT AELSFLP+R+VA EN RTQ++ VR+
Sbjct: 196 VESGISIEAAMRRVSEELGEQSPPLAEEMVLTTAELSFLPDRRVALENLATRTQIELVRS 255
Query: 254 ATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILV 313
TQALIQ+DRYGT + +LRVL E R ER+ EAEKKAA+L PKLTVPMI+FFLPVLI V
Sbjct: 256 VTQALIQADRYGTPVAQALRVLAQEGRDERMNEAEKKAAALPPKLTVPMILFFLPVLIAV 315
Query: 314 IIGPAILSIID 324
I+GPA + + D
Sbjct: 316 ILGPAGIQVSD 326
>gi|241207162|ref|YP_002978258.1| type II secretion system protein [Rhizobium leguminosarum bv.
trifolii WSM1325]
gi|240861052|gb|ACS58719.1| type II secretion system protein [Rhizobium leguminosarum bv.
trifolii WSM1325]
Length = 328
Score = 346 bits (887), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 171/311 (54%), Positives = 233/311 (74%), Gaps = 2/311 (0%)
Query: 16 VAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSR--LR 73
+A+ A+++F+ Y + IP G+L KRMK+V+ ERE +R ++ + ++ + + LR
Sbjct: 16 IALFVAIAVFATFYTIAIPFFERGDLNKRMKAVSTEREQIRARERARMNTETGAGKASLR 75
Query: 74 TRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGII 133
++++S+R V++ NL+ LVDEN VNKLRAAGFRSE +LN LV R ++P +FL L +
Sbjct: 76 NQNNRSVRQIVERFNLRKALVDENTVNKLRAAGFRSENALNTFLVARFLLPFLFLTLAAV 135
Query: 134 WIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLIC 193
W+FG L E +R+ AVI +GY+GF AP+++ISN + KRQ SIKRAWPDALDL+LIC
Sbjct: 136 WVFGLGNLAEKGTPIRLFAVIGVGYLGFYAPNIFISNRMGKRQHSIKRAWPDALDLMLIC 195
Query: 194 VESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRN 253
VESGISI+ A+RRV+E++G QS L+EEM+LT AELSFLP+R+ A EN RTQ++ VR+
Sbjct: 196 VESGISIEAAMRRVSEELGEQSPALAEEMVLTTAELSFLPDRRAALENLATRTQIELVRS 255
Query: 254 ATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILV 313
TQALIQ+DRYGT + +LRVL E R ER+ EAEKKAA+L PKLTVPMI+FFLPVLI V
Sbjct: 256 VTQALIQADRYGTPVAQALRVLAQEGRDERMNEAEKKAAALPPKLTVPMILFFLPVLIAV 315
Query: 314 IIGPAILSIID 324
I+GPA + + D
Sbjct: 316 ILGPAGIQVAD 326
>gi|15887568|ref|NP_353249.1| components of type IV pilus [Agrobacterium tumefaciens str. C58]
gi|15155105|gb|AAK86034.1| components of type IV pilus [Agrobacterium tumefaciens str. C58]
Length = 328
Score = 344 bits (882), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 165/313 (52%), Positives = 234/313 (74%), Gaps = 4/313 (1%)
Query: 16 VAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILR---KQQITSLQKDSASSRL 72
+AI +++F+ +Y +++P L +L KRMK+V+ ERE++R ++++ ++ +D +S L
Sbjct: 16 IAILVTLAVFATLYTLIMPFLERKDLAKRMKAVSSERELIRSRERERLATVTRDGRTS-L 74
Query: 73 RTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGI 132
R ++KS R V+K NL+ L D+N +NKLRAAGFRS+ +LN L R V+P IFL +
Sbjct: 75 RGNNNKSARRIVEKFNLREALADQNTMNKLRAAGFRSQNALNTFLAARFVLPFIFLAVAF 134
Query: 133 IWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLI 192
W+F L + F +R+ AV++ GY+GF AP++++SN + KRQ+SIKRAWPDALDL+LI
Sbjct: 135 TWVFVLGNLADKAFVVRLMAVLVFGYIGFYAPNIYVSNRMTKRQASIKRAWPDALDLMLI 194
Query: 193 CVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVR 252
C+ESG+S++ A+RRVAE++G QS L+EEM+LT AELSFL +R+ A ENF RTQ+D V+
Sbjct: 195 CIESGVSMESAMRRVAEEMGEQSPELAEEMILTTAELSFLQDRRTALENFGMRTQLDGVK 254
Query: 253 NATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLIL 312
+ QALIQ++RYGT + +LRVL E R ER+ EAEKKAA+L PKLTVPMIIFFLPVLI
Sbjct: 255 SVVQALIQAERYGTPLAQALRVLAQEGRDERMNEAEKKAAALPPKLTVPMIIFFLPVLIA 314
Query: 313 VIIGPAILSIIDT 325
VI+GPA + + DT
Sbjct: 315 VILGPAGIRVADT 327
>gi|222084474|ref|YP_002543003.1| pilus assembly protein [Agrobacterium radiobacter K84]
gi|221721922|gb|ACM25078.1| pilus assembly protein [Agrobacterium radiobacter K84]
Length = 325
Score = 343 bits (881), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 160/309 (51%), Positives = 228/309 (73%)
Query: 16 VAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTR 75
+A+ A+++F+ Y + +P L G+L KRMK+V+ ERE +R ++ L D + + LR++
Sbjct: 15 LAVFVAIAVFATFYTIAVPFLERGDLNKRMKAVSTEREQIRARERARLNTDGSKASLRSQ 74
Query: 76 DSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWI 135
++K++R V++ NL+ LVD N VN+LRAAG RSE +LN+ LV R ++P +FL + + +
Sbjct: 75 NNKNVRQIVERFNLRNALVDTNTVNRLRAAGLRSENALNMFLVARFLLPFLFLAVAVFLV 134
Query: 136 FGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVE 195
FG PF R+ VI Y+GF +P+++ISN V KRQ SIKRAWPDALDL+LICVE
Sbjct: 135 FGLGYFAAKPFAFRLLGVIGTAYLGFYSPNIYISNRVTKRQKSIKRAWPDALDLMLICVE 194
Query: 196 SGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNAT 255
SGISI+ +RRV+E++ QS L+EEM+LT AELSFL +R+ AF+N RTQ++ V++ T
Sbjct: 195 SGISIEAGMRRVSEEMAEQSPALAEEMVLTTAELSFLQDRRTAFDNLAARTQIEIVKSVT 254
Query: 256 QALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVII 315
QALIQ++RYGT + +LRV+ E R ER+ EAEKKAA+L PKLTVPMI+FFLPVL+ VI+
Sbjct: 255 QALIQAERYGTPVSQALRVMAQEGRDERMNEAEKKAAALPPKLTVPMIVFFLPVLMAVIL 314
Query: 316 GPAILSIID 324
GPAI+ ++D
Sbjct: 315 GPAIIQVMD 323
>gi|116249986|ref|YP_765824.1| component of pilus protein [Rhizobium leguminosarum bv. viciae
3841]
gi|115254634|emb|CAK05708.1| putative component of pilus protein [Rhizobium leguminosarum bv.
viciae 3841]
Length = 328
Score = 342 bits (876), Expect = 6e-92, Method: Compositional matrix adjust.
Identities = 170/311 (54%), Positives = 234/311 (75%), Gaps = 2/311 (0%)
Query: 16 VAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSR--LR 73
+A+ A+++F+ Y + +P G+L KRMK+V+ ERE +R ++ + ++ + + LR
Sbjct: 16 IALLVAIAVFATFYTIAVPFFERGDLNKRMKAVSTEREQIRARERARMNTETGAGKASLR 75
Query: 74 TRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGII 133
+++++S+R V++ NL+ LVDEN +NKLRAAGFRSE +LN LV R ++P +FL L
Sbjct: 76 SQNNRSVRQIVERFNLRKALVDENTINKLRAAGFRSENALNTFLVARFLLPFLFLALAAF 135
Query: 134 WIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLIC 193
W+FG L E +R+ AVI +GY+GF AP+++ISN + KRQ SIKRAWPDALDL+LIC
Sbjct: 136 WVFGLGNLAEKGTPIRLFAVIGVGYLGFYAPNIYISNRMGKRQHSIKRAWPDALDLMLIC 195
Query: 194 VESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRN 253
VESGISI+ A+RRV+E++G QS L+EEM+LT AELSFLP+R+VA EN RTQ++ VR+
Sbjct: 196 VESGISIEAAMRRVSEELGEQSPALAEEMVLTTAELSFLPDRRVALENLATRTQIELVRS 255
Query: 254 ATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILV 313
TQALIQ+DRYGT + +LRVL E R ER+ EAEKKAA+L PKLTVPMI+FFLPVLI V
Sbjct: 256 VTQALIQADRYGTPVAQALRVLAQEGRDERMNEAEKKAAALPPKLTVPMILFFLPVLIAV 315
Query: 314 IIGPAILSIID 324
I+GPA + + D
Sbjct: 316 ILGPAGIQVAD 326
>gi|325291654|ref|YP_004277518.1| components of type IV pilus [Agrobacterium sp. H13-3]
gi|325059507|gb|ADY63198.1| components of type IV pilus [Agrobacterium sp. H13-3]
Length = 328
Score = 339 bits (870), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 161/313 (51%), Positives = 232/313 (74%), Gaps = 4/313 (1%)
Query: 16 VAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILR---KQQITSLQKDSASSRL 72
+AI +++F+ +Y +++P + KRMK+V+ ER+++R ++++ + +D +S L
Sbjct: 16 IAILVTLAVFATLYTLIMPLFERKDFAKRMKAVSSERDLIRSRERERLAAATRDGKAS-L 74
Query: 73 RTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGI 132
R ++KS R V+K NL+ L D+N +NKLRAAGFRS+ +LN L R V+P +FL L
Sbjct: 75 RGNNNKSARRIVEKFNLQEALADKNTMNKLRAAGFRSQNALNTFLAARFVLPFVFLALAF 134
Query: 133 IWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLI 192
W+F L + F +R+ AV++ GY+GF AP++++SN + KRQ+SI+RAWPDALDL+LI
Sbjct: 135 TWVFVLGNLADKAFVVRLMAVLIFGYLGFYAPNIYVSNAMNKRQASIRRAWPDALDLMLI 194
Query: 193 CVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVR 252
C+ESG+S++ A+RRVAE++G QS L+EEM+LT AELSFL +R++A ENF RTQ+D V+
Sbjct: 195 CIESGVSMEAAMRRVAEEMGEQSPELAEEMMLTTAELSFLQDRRIALENFGMRTQLDGVK 254
Query: 253 NATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLIL 312
+ QALIQ++RYGT + +LRVL E R ER+ EAEKKAA+L PKLTVPMIIFFLPVLI
Sbjct: 255 SVVQALIQAERYGTPLAQALRVLAQEGRDERMNEAEKKAAALPPKLTVPMIIFFLPVLIA 314
Query: 313 VIIGPAILSIIDT 325
VI+GPA + + DT
Sbjct: 315 VILGPAGIRVADT 327
>gi|86355869|ref|YP_467761.1| pilus assembly protein [Rhizobium etli CFN 42]
gi|86279971|gb|ABC89034.1| probable pilus assembly protein [Rhizobium etli CFN 42]
Length = 328
Score = 339 bits (869), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 169/311 (54%), Positives = 232/311 (74%), Gaps = 2/311 (0%)
Query: 16 VAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSR--LR 73
+A+ A+++F+ Y + IP G+L KRMK+V+ ERE +R ++ + + + + LR
Sbjct: 16 IAVFVAIAVFATFYTIAIPFFERGDLNKRMKAVSTEREQIRARERARMNTEPGAGKTSLR 75
Query: 74 TRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGII 133
++++S+R V++ NL+ LVDEN VNKLRAAGFRSE +LN LV R ++P +FL L
Sbjct: 76 NQNNRSVRQIVERFNLRKALVDENTVNKLRAAGFRSENALNTFLVARFLLPFLFLALAAF 135
Query: 134 WIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLIC 193
W+FG L + +R+ AVI I Y+GF AP+++ISN + KRQ SIKRAWPDALDL+LIC
Sbjct: 136 WVFGLGGLADRGMPMRMLAVIGIAYLGFYAPNIYISNRMSKRQHSIKRAWPDALDLMLIC 195
Query: 194 VESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRN 253
VESG+S++ A+RRV+E++G QS PL+EEM+LT AELSFLP+R+VA +N RTQ++ VR+
Sbjct: 196 VESGVSMEAAMRRVSEELGEQSPPLAEEMVLTTAELSFLPDRRVALDNLAARTQLELVRS 255
Query: 254 ATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILV 313
TQALIQ+DRYGT + +LRVL E R ER+ EAEKKAA+L PKLTVPMI+FFLPVLI V
Sbjct: 256 VTQALIQADRYGTPVAQALRVLAQEGRDERMNEAEKKAAALPPKLTVPMILFFLPVLIAV 315
Query: 314 IIGPAILSIID 324
I+GPA + + D
Sbjct: 316 ILGPAGIQVAD 326
>gi|150398546|ref|YP_001329013.1| type II secretion system protein [Sinorhizobium medicae WSM419]
gi|150030061|gb|ABR62178.1| type II secretion system protein [Sinorhizobium medicae WSM419]
Length = 327
Score = 328 bits (841), Expect = 7e-88, Method: Compositional matrix adjust.
Identities = 159/311 (51%), Positives = 225/311 (72%), Gaps = 2/311 (0%)
Query: 16 VAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSR--LR 73
VA+ ++++ + Y++V P L G+L KRMKSVA ERE +R ++ L ++ + R LR
Sbjct: 15 VAVLVSMAVLATFYSLVAPLLERGDLAKRMKSVATEREQIRARERARLNTEAPTGRASLR 74
Query: 74 TRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGII 133
T+ + S+R V++LNL+ LVD+N VN+L+ AGFRS+ +LN L R +P +FL + ++
Sbjct: 75 TQHNSSVREVVERLNLRKALVDDNTVNRLKTAGFRSQNALNTFLFARFCLPFLFLTVSVL 134
Query: 134 WIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLIC 193
+IF + P +RV I YVGF AP+++I+N + KRQ SI+RAWPDALDLLLIC
Sbjct: 135 YIFVLGNFADKPVMVRVSFAIGFAYVGFYAPNIFIANAISKRQHSIRRAWPDALDLLLIC 194
Query: 194 VESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRN 253
VESG+S++ A+RRVA++I QS PL+EE++LT AELSFLP R+VA EN RT ++ V++
Sbjct: 195 VESGVSMELAMRRVADEIAVQSQPLAEELVLTTAELSFLPERRVALENLGRRTGLEEVKS 254
Query: 254 ATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILV 313
QALIQ+DRYGT + +LRVL E+R +R+ AEKKAA+L PKLTVPMI+FFLPVL+ V
Sbjct: 255 VMQALIQADRYGTPVAQALRVLAQESRDQRMTAAEKKAAALPPKLTVPMILFFLPVLVAV 314
Query: 314 IIGPAILSIID 324
I+GPA + + D
Sbjct: 315 ILGPAGIQVAD 325
>gi|15963899|ref|NP_384252.1| hypothetical protein SMc02822 [Sinorhizobium meliloti 1021]
gi|307320431|ref|ZP_07599848.1| Type II secretion system F domain protein [Sinorhizobium meliloti
AK83]
gi|15073074|emb|CAC41533.1| Hypothetical transmembrane protein [Sinorhizobium meliloti 1021]
gi|306893997|gb|EFN24766.1| Type II secretion system F domain protein [Sinorhizobium meliloti
AK83]
Length = 327
Score = 327 bits (837), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 158/311 (50%), Positives = 224/311 (72%), Gaps = 2/311 (0%)
Query: 16 VAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSR--LR 73
VA ++++ + Y++V P L G+L KRMKSVA ERE +R ++ L ++ + R LR
Sbjct: 15 VAALVSMAVLATFYSLVAPLLERGDLAKRMKSVATEREQIRARERARLNAEATTGRASLR 74
Query: 74 TRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGII 133
+ + S+R V++LNL+ LVD+N VN+L+ AG+RS+ +LN L R +P +FL + ++
Sbjct: 75 AQHNTSVREIVERLNLRKALVDDNTVNRLKTAGYRSQNALNTFLFARFCLPFLFLTVAVL 134
Query: 134 WIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLIC 193
+IF + P +RV I YVGF AP+++I+N + KRQ SI+RAWPDALDLLLIC
Sbjct: 135 YIFVLGNFADKPIMVRVSFAIGFAYVGFYAPNIFIANAISKRQQSIRRAWPDALDLLLIC 194
Query: 194 VESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRN 253
VESG+S++ A+RRVA++I QS PL+EE++LT AELSFLP R++A EN RT +D V++
Sbjct: 195 VESGVSMELAMRRVADEIAVQSPPLAEELVLTTAELSFLPERRIALENLGLRTGLDEVKS 254
Query: 254 ATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILV 313
TQALIQ+DRYGT + +LRVL E+R +R+ AEKKAA+L PKLTVPMI+FFLPVL+ V
Sbjct: 255 VTQALIQADRYGTPVAQALRVLAQESRDQRMTAAEKKAAALPPKLTVPMILFFLPVLVAV 314
Query: 314 IIGPAILSIID 324
I+GPA + + D
Sbjct: 315 ILGPAGIQVAD 325
>gi|307315796|ref|ZP_07595310.1| Type II secretion system F domain protein [Sinorhizobium meliloti
BL225C]
gi|306898564|gb|EFN29237.1| Type II secretion system F domain protein [Sinorhizobium meliloti
BL225C]
Length = 327
Score = 326 bits (836), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 158/311 (50%), Positives = 223/311 (71%), Gaps = 2/311 (0%)
Query: 16 VAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSR--LR 73
VA ++++ + Y++V P L G+L KRMKSVA ERE +R ++ L ++ + R LR
Sbjct: 15 VAALVSMAVLATFYSLVAPLLERGDLAKRMKSVATEREQIRARERARLNAEATTGRASLR 74
Query: 74 TRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGII 133
+ + S+R V++LNL+ LVD+N VN+L+ AG+RS+ +LN L R +P +FL + ++
Sbjct: 75 AQHNTSVREIVERLNLRKALVDDNTVNRLKTAGYRSQNALNTFLFARFCLPFLFLTVAVL 134
Query: 134 WIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLIC 193
+IF + P +RV I YVGF AP ++I+N + KRQ SI+RAWPDALDLLLIC
Sbjct: 135 YIFVLGNFADKPIMVRVSFAIGFAYVGFYAPKIFIANAISKRQQSIRRAWPDALDLLLIC 194
Query: 194 VESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRN 253
VESG+S++ A+RRVA++I QS PL+EE++LT AELSFLP R++A EN RT +D V++
Sbjct: 195 VESGVSMELAMRRVADEIAVQSPPLAEELVLTTAELSFLPERRIALENLGLRTGLDEVKS 254
Query: 254 ATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILV 313
TQALIQ+DRYGT + +LRVL E+R +R+ AEKKAA+L PKLTVPMI+FFLPVL+ V
Sbjct: 255 VTQALIQADRYGTPVAQALRVLAQESRDQRMTAAEKKAAALPPKLTVPMILFFLPVLVAV 314
Query: 314 IIGPAILSIID 324
I+GPA + + D
Sbjct: 315 ILGPAGIQVAD 325
>gi|227823976|ref|YP_002827949.1| components of type IV pilus TadC [Sinorhizobium fredii NGR234]
gi|227342978|gb|ACP27196.1| components of type IV pilus TadC [Sinorhizobium fredii NGR234]
Length = 327
Score = 319 bits (818), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 150/311 (48%), Positives = 224/311 (72%), Gaps = 2/311 (0%)
Query: 16 VAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSR--LR 73
+A+ ++++ + Y++ +P G+L KRMKSVA ERE +R ++ L ++++ + LR
Sbjct: 15 IAVLVSMAVLATFYSLAVPFFERGDLTKRMKSVATEREQIRARERARLNAEASAGKASLR 74
Query: 74 TRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGII 133
+ + S+R V++LNL+ LVD+N VN+L+ AG+RS+ +LN L R +P +FL + ++
Sbjct: 75 AQHNTSVRQIVERLNLRQALVDDNTVNRLKTAGYRSQNALNTFLFARFCLPFLFLTVAVV 134
Query: 134 WIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLIC 193
+IF + PF LR+ + Y+GF AP+++I+N + KRQ SI+RAWPDALDLLLIC
Sbjct: 135 YIFVLGNFADKPFMLRICFALGFAYLGFYAPNIFIANAISKRQHSIRRAWPDALDLLLIC 194
Query: 194 VESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRN 253
VESG+S++ A+RRVA++I QS L+EE++LT AELSFLP+R++A EN R+ ++ V+
Sbjct: 195 VESGVSMELAMRRVADEIAAQSSALAEELVLTTAELSFLPDRRIALENLGLRSGLEEVKA 254
Query: 254 ATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILV 313
QALIQ+DRYGT I +LRVL E+R +R+ AEKKAA+L PKLTVPMI+FFLPVL+ V
Sbjct: 255 VMQALIQADRYGTPIAQALRVLAQESRDQRMTAAEKKAAALPPKLTVPMILFFLPVLVAV 314
Query: 314 IIGPAILSIID 324
I+GPA + + D
Sbjct: 315 ILGPAGIQVAD 325
>gi|222147177|ref|YP_002548134.1| component of type IV pilus [Agrobacterium vitis S4]
gi|221734167|gb|ACM35130.1| component of type IV pilus [Agrobacterium vitis S4]
Length = 326
Score = 313 bits (803), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 153/311 (49%), Positives = 222/311 (71%)
Query: 14 LAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLR 73
L +A+ A+++F+ +Y ++ P L +L KRMK+V+ ERE++R ++ + + LR
Sbjct: 14 LLIAVLVAIAVFATLYTLISPLLERSDLNKRMKAVSSERELIRARERARMNSEGGRGSLR 73
Query: 74 TRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGII 133
D+ S R V++ NL+ LVD+ +++L+ AG RS+ +LN+ L R ++P +FL L
Sbjct: 74 NTDNSSARKIVERFNLRKALVDDKTMDRLKTAGLRSQNALNMFLTARFLLPFLFLALATT 133
Query: 134 WIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLIC 193
WIF + PF +R A ++ GYVGF P+++ISN + KRQ SI+RAWPDALDL+LIC
Sbjct: 134 WIFALHNMQSRPFAVRFLAAVVAGYVGFYLPNIYISNRITKRQHSIRRAWPDALDLMLIC 193
Query: 194 VESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRN 253
VESG+S++ A+RRVA+++ QS L+EEM+LT AELSFL +R+ A+EN NRTQ++ V++
Sbjct: 194 VESGMSMEAAMRRVADEMASQSPALAEEMVLTTAELSFLQDRRTAYENLGNRTQLEIVKS 253
Query: 254 ATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILV 313
QALIQ++RYGT IG +LRVL E R ER+ AEKKAA+L PKLTVPMI+FFLPVL+ V
Sbjct: 254 VCQALIQAERYGTPIGQALRVLAQEGRDERMNAAEKKAAALPPKLTVPMILFFLPVLVAV 313
Query: 314 IIGPAILSIID 324
I+GPA + + D
Sbjct: 314 ILGPAGIRVSD 324
>gi|163757632|ref|ZP_02164721.1| putative component of pilus protein [Hoeflea phototrophica DFL-43]
gi|162285134|gb|EDQ35416.1| putative component of pilus protein [Hoeflea phototrophica DFL-43]
Length = 331
Score = 312 bits (799), Expect = 5e-83, Method: Compositional matrix adjust.
Identities = 158/314 (50%), Positives = 227/314 (72%), Gaps = 5/314 (1%)
Query: 16 VAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKD-----SASS 70
V I +V++F+ ++ ++ P G+L+KRMKS A+ER+ +R ++ L + S S+
Sbjct: 16 VPILVSVAVFATLFTIMAPYFERGDLDKRMKSAALERDEIRARERARLHAEQSRGGSKSA 75
Query: 71 RLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLIL 130
LR ++ S+R V++LNL+ L D+ V KLRAAG+R++ +LN+ L+ R V+P F +
Sbjct: 76 GLRAHNNASVRGIVEQLNLRKALADDATVAKLRAAGYRTQNALNMFLLARFVLPFFFFVA 135
Query: 131 GIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLL 190
++++F + + + P +R+ A I+ Y GF AP+++ISN +KRQ SIK AWPDALDLL
Sbjct: 136 AVVYVFVLENMTDKPTTVRLLACIVAAYAGFYAPNIFISNQSKKRQQSIKMAWPDALDLL 195
Query: 191 LICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDC 250
LICVESG+SI+ A++RVAE+I QS L+EE LLT AELS+L +R+VAFEN NRT ++
Sbjct: 196 LICVESGVSIEAAMKRVAEEIAIQSTALAEEFLLTTAELSYLQDRRVAFENLGNRTGLEA 255
Query: 251 VRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVL 310
V++ TQALIQS+RYGT I +LRVL E+R R+ EAEKKAA+L PKLTVPMI+FFLPVL
Sbjct: 256 VKSVTQALIQSERYGTPIAQALRVLAQESRDARMTEAEKKAAALPPKLTVPMILFFLPVL 315
Query: 311 ILVIIGPAILSIID 324
I VI+GPA + ++D
Sbjct: 316 IGVILGPAAIQVMD 329
>gi|328545274|ref|YP_004305383.1| hypothetical protein SL003B_3658 [polymorphum gilvum SL003B-26A1]
gi|326415016|gb|ADZ72079.1| Hypothetical transmembrane protein [Polymorphum gilvum SL003B-26A1]
Length = 325
Score = 310 bits (794), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 155/325 (47%), Positives = 223/325 (68%), Gaps = 4/325 (1%)
Query: 5 FFDLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQ 64
F DL + +++ +A+ T V++ ++ +V+P L+ RMK+VA+ERE +R ++ L
Sbjct: 3 FSDLAN-SQMVIAVLTMVAVAGTVFTLVMPVFERDGLKSRMKTVALEREKIRARERARLA 61
Query: 65 KDSASSR--LRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLV 122
+ +R LR + K ++N V KLNL+ L DEN +KLR AG+R L L R+V
Sbjct: 62 TEKGDTRVSLRNQPKKQVKNLVDKLNLRTALADENTQDKLRMAGYRGTGPLYTFLFARIV 121
Query: 123 VPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRA 182
+P+I ++ + ++F + P +V A + +G +G AP+V+I N + KRQ SI+RA
Sbjct: 122 MPLILFVIALFYVFAFLPA-TLPSFTKVCAALFVGGIGVFAPNVYIQNRITKRQQSIRRA 180
Query: 183 WPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENF 242
WPDALDL+LICVESG+SI+ A R+VA++IG QS+PL+EE+ LT AELSFL R+ A+ NF
Sbjct: 181 WPDALDLMLICVESGMSIEAAFRKVADEIGIQSIPLAEELTLTNAELSFLQERRQAYLNF 240
Query: 243 YNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPM 302
RT +D V+N T ALIQ++RYGT IG +LRV+ + R +R+ EAEKKAASL PKLTVPM
Sbjct: 241 AKRTGVDGVKNVTMALIQAERYGTPIGHALRVMADDNREQRMQEAEKKAASLPPKLTVPM 300
Query: 303 IIFFLPVLILVIIGPAILSIIDTMK 327
I+FFLPVL VI+GPA++ II T +
Sbjct: 301 IVFFLPVLFFVIMGPAVMQIIATFR 325
>gi|153008064|ref|YP_001369279.1| type II secretion system protein [Ochrobactrum anthropi ATCC 49188]
gi|151559952|gb|ABS13450.1| type II secretion system protein [Ochrobactrum anthropi ATCC 49188]
Length = 333
Score = 306 bits (784), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 152/302 (50%), Positives = 213/302 (70%), Gaps = 1/302 (0%)
Query: 22 VSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDS-ASSRLRTRDSKSL 80
V++F+ + +++P L L+ RMKSVA ERE +R ++ L +S + LR + + +
Sbjct: 22 VAVFATVVTILMPVLSGSALKSRMKSVATEREAIRSRERARLAAESDRRNSLRHQQKQGI 81
Query: 81 RNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDK 140
R FV++L+LK L DE + LR AGFR + LNI L +R V+P +++ I+IF
Sbjct: 82 REFVERLDLKRALADEKTIASLRQAGFRGQNPLNIFLFLRFVLPFGAMLIAAIYIFMLGV 141
Query: 141 LLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISI 200
L + F +R+ I GY GF AP++++SN KR+ SI+RAWPDALDL+LICVESG+S
Sbjct: 142 LADQTFFVRLLVCIFAGYAGFYAPNLYVSNRATKRKQSIRRAWPDALDLMLICVESGMST 201
Query: 201 DQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQ 260
+ A RRVA++IG QSV L+EE++LT AELSFLP R+ A+EN NRT +D V++ TQALIQ
Sbjct: 202 EAAFRRVADEIGIQSVELAEELMLTNAELSFLPERRQAYENLANRTGLDPVKSVTQALIQ 261
Query: 261 SDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAIL 320
++RYGT + +LR L E+R RL++AEKKAA+L PKLTVPMI+FFLPVL +VI+GPA +
Sbjct: 262 AERYGTPVSQALRTLSQESRDLRLLDAEKKAAALPPKLTVPMIVFFLPVLFIVILGPAFI 321
Query: 321 SI 322
I
Sbjct: 322 QI 323
>gi|239833232|ref|ZP_04681561.1| type II secretion system protein [Ochrobactrum intermedium LMG
3301]
gi|239825499|gb|EEQ97067.1| type II secretion system protein [Ochrobactrum intermedium LMG
3301]
Length = 333
Score = 305 bits (782), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 154/302 (50%), Positives = 210/302 (69%), Gaps = 1/302 (0%)
Query: 22 VSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDS-ASSRLRTRDSKSL 80
V++F+ + +++P L L+ RMKSVA ERE +R ++ L +S LR + +
Sbjct: 22 VAVFATVVTILLPVLSGSALKSRMKSVATEREAIRSRERARLAAESDRRGSLRHQQKPGI 81
Query: 81 RNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDK 140
R FV+KL+LK L DE V LR AGFR + LNI L +R V+P + + I+IF
Sbjct: 82 REFVEKLDLKRALADEKTVASLRQAGFRGQNPLNIFLFLRFVLPFGAMAIAAIYIFVLGV 141
Query: 141 LLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISI 200
L + F +R+ I GY GF AP++++SN KR+ SI+RAWPDALDL+LICVESG+S
Sbjct: 142 LADQTFFVRLLVCIFAGYAGFYAPNLYVSNRATKRKQSIRRAWPDALDLMLICVESGMST 201
Query: 201 DQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQ 260
+ A RRVA++IG QSV L+EE++LT AELSFLP R+ A+EN NRT ++ V++ TQALIQ
Sbjct: 202 EAAFRRVADEIGIQSVELAEELMLTNAELSFLPERRQAYENLANRTGLEPVKSVTQALIQ 261
Query: 261 SDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAIL 320
++RYGT + +LR L E+R RL+EAEKKAA+L PKLTVPMI+FFLPVL +VI+GPA +
Sbjct: 262 AERYGTPVAQALRTLSQESRDLRLLEAEKKAAALPPKLTVPMIVFFLPVLFIVILGPAFI 321
Query: 321 SI 322
I
Sbjct: 322 QI 323
>gi|13474665|ref|NP_106234.1| hypothetical protein mlr5604 [Mesorhizobium loti MAFF303099]
gi|14025420|dbj|BAB52020.1| mlr5604 [Mesorhizobium loti MAFF303099]
Length = 339
Score = 299 bits (766), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 147/311 (47%), Positives = 220/311 (70%), Gaps = 3/311 (0%)
Query: 14 LAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSR-- 71
L +A+ A+++F+ ++ ++P+ G +L+ RMKSVA+ER+ LR +Q L ++ R
Sbjct: 14 LLIALLVAIAVFATVF-TLLPAFGGNQLKARMKSVALERDELRAKQRARLASEADRRRKG 72
Query: 72 LRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILG 131
LR + S +RN V +L+L+ L DE+ + KL+ AGFR + L L RLV+P + LG
Sbjct: 73 LREQQSVGMRNIVDRLDLRRALADESTLQKLKVAGFRGQNPLTRFLFFRLVLPFVGFALG 132
Query: 132 IIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLL 191
+++IF L + P +R+ IL+ Y GF AP V+++N KR+ SI+ AWPDALDL+L
Sbjct: 133 LVYIFVLGGLPDKPLVIRLFVCILVAYGGFYAPVVYVNNRATKRKQSIQMAWPDALDLML 192
Query: 192 ICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCV 251
ICVESG+S++ ALR+VA++IG QSV L+EE +LT AELS+L R+ A+EN NRT ++ V
Sbjct: 193 ICVESGMSVEAALRKVADEIGAQSVALAEEFILTNAELSYLQERKQAYENLANRTGLESV 252
Query: 252 RNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLI 311
++ +QAL+Q++RYGT + +LRVL +E+R +R+ AEKKAA+L PKLTVPMI+FFLPVL
Sbjct: 253 KSVSQALVQAERYGTPVAHALRVLAAESRDQRMNAAEKKAAALPPKLTVPMILFFLPVLF 312
Query: 312 LVIIGPAILSI 322
+I+GPA + +
Sbjct: 313 AIILGPAGIQV 323
>gi|319785603|ref|YP_004145079.1| type II secretion system F domain [Mesorhizobium ciceri biovar
biserrulae WSM1271]
gi|317171491|gb|ADV15029.1| Type II secretion system F domain [Mesorhizobium ciceri biovar
biserrulae WSM1271]
Length = 340
Score = 296 bits (758), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 146/309 (47%), Positives = 213/309 (68%), Gaps = 3/309 (0%)
Query: 16 VAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSL--QKDSASSRLR 73
+A+ A+++F+ ++ ++P+ G +L+ RMKSVA+ER+ LR QQ L + D LR
Sbjct: 16 IAMLVAIAVFATVF-TLLPAFGGNQLKSRMKSVALERDELRAQQRARLAVEADRRRKGLR 74
Query: 74 TRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGII 133
S +RN V +L+L+ L DE + KL+ AGFR + L L RLV+P + L I
Sbjct: 75 EEQSIGMRNIVDRLDLRRALADEGTLQKLKVAGFRGQNPLTRFLFFRLVLPFVGFALAAI 134
Query: 134 WIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLIC 193
+IF L + P +R+ IL+ Y GF AP ++++N KR+ SI+ AWPD LDL+LIC
Sbjct: 135 YIFVLGGLPDKPLVIRLFVCILVAYGGFYAPVIYVNNRATKRKQSIQMAWPDGLDLMLIC 194
Query: 194 VESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRN 253
VESG+S++ ALR+VA++IG QSV L+EE +LT AELS+LP R+ A+EN +RT +D V++
Sbjct: 195 VESGMSVEAALRKVADEIGAQSVALAEEFILTNAELSYLPERKQAYENLASRTGLDSVKS 254
Query: 254 ATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILV 313
+QAL+Q++RYGT + +LRVL +E+R R+ AEKKAA+L PKLTVPMI+FFLPVL +
Sbjct: 255 VSQALVQAERYGTPVAHALRVLAAESRDMRMNAAEKKAAALPPKLTVPMILFFLPVLFAI 314
Query: 314 IIGPAILSI 322
I+GPA + +
Sbjct: 315 ILGPAGIQV 323
>gi|260461944|ref|ZP_05810189.1| type II secretion system protein [Mesorhizobium opportunistum
WSM2075]
gi|259032191|gb|EEW33457.1| type II secretion system protein [Mesorhizobium opportunistum
WSM2075]
Length = 339
Score = 296 bits (757), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 146/311 (46%), Positives = 218/311 (70%), Gaps = 3/311 (0%)
Query: 14 LAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSR-- 71
L +A+ A+++F+ ++ ++P+ +L+ RMKSVA+ER+ LR +Q L ++ R
Sbjct: 14 LLIALLVAIAVFATVF-TLLPAFSGNQLKSRMKSVALERDELRAKQRARLATEADRRRKG 72
Query: 72 LRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILG 131
LR S +RN V +L+L+ L DE+ + KL+ AGFR + L L RLV+P + L L
Sbjct: 73 LREEQSVGMRNIVDRLDLRRALADESTLQKLKVAGFRGQNPLTRFLFFRLVLPFVGLALA 132
Query: 132 IIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLL 191
+++IF L + P +R+ IL+ Y GF AP V+++N KR+ SI+ AWPDALDL+L
Sbjct: 133 LVYIFVLGGLPDKPLVIRLFVCILVAYAGFYAPVVYVNNRATKRKQSIQMAWPDALDLML 192
Query: 192 ICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCV 251
ICVESG+S++ ALR+VA++IG QSV L+EE +LT AELS+L R+ A+EN +RT ++ V
Sbjct: 193 ICVESGMSVEAALRKVADEIGAQSVALAEEFILTNAELSYLQERKQAYENLASRTGLESV 252
Query: 252 RNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLI 311
R+ +QAL+Q++RYGT + +LRVL +E+R +R+ AEKKAA+L PKLTVPMI+FFLPVL
Sbjct: 253 RSVSQALVQAERYGTPVAHALRVLAAESRDQRMNAAEKKAAALPPKLTVPMILFFLPVLF 312
Query: 312 LVIIGPAILSI 322
+I+GPA + +
Sbjct: 313 AIILGPAGIQV 323
>gi|90419769|ref|ZP_01227678.1| putative Flp pilus assembly protein TadC, type II/IV secretion
system [Aurantimonas manganoxydans SI85-9A1]
gi|90335810|gb|EAS49558.1| putative Flp pilus assembly protein TadC, type II/IV secretion
system [Aurantimonas manganoxydans SI85-9A1]
Length = 332
Score = 293 bits (751), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 146/313 (46%), Positives = 214/313 (68%), Gaps = 3/313 (0%)
Query: 14 LAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVERE--ILRKQQITSLQKDSASSR 71
+A ++ A+++F+ A+ +P L +L+ RMK+VA+ER+ R++ + + + S
Sbjct: 17 VAASLVMAIAVFTTFVAIAMPMLAGNQLKSRMKAVALERDEVRARERARMAAENERGRSG 76
Query: 72 LRTRDSKSLRNFV-KKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLIL 130
LR +DSK + + V ++LNL+ L D+ V+ LR AG+R + L + L R V+P++ L
Sbjct: 77 LRQQDSKGVASLVVERLNLRTALADDKTVSSLRNAGYRGQRPLTLFLFARAVLPLLMFAL 136
Query: 131 GIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLL 190
+ ++FG L +P +R+ + + YVGF AP ++ N KR+ SI RAWPDALDLL
Sbjct: 137 ALFYVFGLGLLDTHPTMMRIAICLGVAYVGFVAPIFFVKNRATKRRLSISRAWPDALDLL 196
Query: 191 LICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDC 250
LICVESG SI+ A RRVAE+IG QS+PL+EE++L AELS+LP+R+VA++N RT +D
Sbjct: 197 LICVESGNSIEAAFRRVAEEIGIQSIPLAEELVLVCAELSYLPDRKVAYDNLATRTGLDG 256
Query: 251 VRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVL 310
VR AL+Q++RYGT +G +LR L E R +R+ AEKKAA+L PKLTVPMI+FFLPVL
Sbjct: 257 VRTVCTALVQAERYGTPLGTALRTLSQENRDQRMNLAEKKAAALPPKLTVPMIVFFLPVL 316
Query: 311 ILVIIGPAILSII 323
VIIGPAI+ ++
Sbjct: 317 FAVIIGPAIIKVM 329
>gi|110636326|ref|YP_676534.1| type II secretion system protein [Mesorhizobium sp. BNC1]
gi|110287310|gb|ABG65369.1| type II secretion system protein [Chelativorans sp. BNC1]
Length = 329
Score = 286 bits (731), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 151/310 (48%), Positives = 208/310 (67%), Gaps = 4/310 (1%)
Query: 16 VAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSR---L 72
+A+ ++++F+ I+ VV P G L+ RMK+VA+ERE LR +Q L ++ R L
Sbjct: 15 LALLVSIAVFATIFTVV-PVGGGDPLKARMKTVALEREELRAKQRARLAAEAERRRAGGL 73
Query: 73 RTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGI 132
R D S+R V +L+L+ L DE+ V LR AG+R + L L RLV+P L+L +
Sbjct: 74 RREDRSSMRAIVDQLDLRRALADESTVAMLRTAGYRGQSPLTRFLFFRLVLPPAGLMLAL 133
Query: 133 IWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLI 192
+IF L +R+ IL Y GF P ++ISN KR+ SI+ AWPDALDLLLI
Sbjct: 134 FYIFVMGGLAAQSLPIRIFVCILAAYGGFYLPVLYISNQASKRKKSIQLAWPDALDLLLI 193
Query: 193 CVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVR 252
CVESG+S++QA RRVA++IG QSV L+EE++LT AELSFL R+ A+EN RT ++ V+
Sbjct: 194 CVESGVSVEQAFRRVADEIGTQSVALAEELVLTTAELSFLQERRQAYENLAARTGLESVK 253
Query: 253 NATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLIL 312
+ +QALIQ++RYGT I +LRVL E+R R+ AEKKAA+L PKLTVPMI+FFLPVL
Sbjct: 254 SVSQALIQAERYGTPISQALRVLADESREARMNAAEKKAAALPPKLTVPMILFFLPVLFA 313
Query: 313 VIIGPAILSI 322
+I+GPA + +
Sbjct: 314 IILGPAAIQL 323
>gi|118589708|ref|ZP_01547113.1| hypothetical protein SIAM614_04690 [Stappia aggregata IAM 12614]
gi|118437794|gb|EAV44430.1| hypothetical protein SIAM614_04690 [Stappia aggregata IAM 12614]
Length = 325
Score = 275 bits (703), Expect = 7e-72, Method: Compositional matrix adjust.
Identities = 140/327 (42%), Positives = 213/327 (65%), Gaps = 11/327 (3%)
Query: 7 DLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKD 66
D +++ A+ +++ ++++V+P L L+ RMKSVA+ER+ LR ++ LQ
Sbjct: 4 DTLASSQFLAAVLAMIAVTGTVFSLVMPLLSRDTLKSRMKSVAIERDKLRAKERARLQAT 63
Query: 67 SASSR--LRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVP 124
A ++ LR + +++ V +LNLK L D+ V+ LR AG+R L LV R+V+P
Sbjct: 64 HADAKASLRNQPKAQMKSLVDRLNLKEALSDQTTVDNLRMAGYRGAAPLYYFLVARIVIP 123
Query: 125 IIFLILGIIWIFGYDKLLEYPFQLRVGAVIL--IGYVGFCA--PSVWISNLVQKRQSSIK 180
+ + F L P L + I +G G A P++++ N + KR+ +I+
Sbjct: 124 AGIFTFSVAYAF-----LVLPDDLPALSKICFCLGLAGLGAFMPNLYLKNKIDKRKLTIQ 178
Query: 181 RAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFE 240
RAWPDALDL+LICVESG+SI++ RRVAE++G QSV L+EE+ LT AELS+L +R++A+E
Sbjct: 179 RAWPDALDLMLICVESGMSIEEGFRRVAEEVGVQSVELAEELSLTTAELSYLSDRRIAYE 238
Query: 241 NFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV 300
N RT +D V+N ALIQ++RYGT +G +LR + +TR +R+ AE+KAASL PKLTV
Sbjct: 239 NLAKRTGVDGVKNVMMALIQAERYGTPVGTALRTMADDTREQRMQMAEQKAASLPPKLTV 298
Query: 301 PMIIFFLPVLILVIIGPAILSIIDTMK 327
PMI+FFLPVL +I+GPA++ ++DT +
Sbjct: 299 PMIMFFLPVLFFIIMGPAVIQVMDTFR 325
>gi|114705450|ref|ZP_01438358.1| probable pilus assembly protein [Fulvimarina pelagi HTCC2506]
gi|114540235|gb|EAU43355.1| probable pilus assembly protein [Fulvimarina pelagi HTCC2506]
Length = 328
Score = 275 bits (702), Expect = 9e-72, Method: Compositional matrix adjust.
Identities = 142/316 (44%), Positives = 209/316 (66%), Gaps = 2/316 (0%)
Query: 13 ELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASS-R 71
E+ ++ ++++F+ + AVV+P L L+ RMKSVA+ER+ +R ++ L +D
Sbjct: 13 EVFFSVVLSLAVFASVLAVVLPQLERNRLQSRMKSVAIERDEMRARERARLGRDKGGKPS 72
Query: 72 LRTRDSKS-LRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLIL 130
LR + + + V LNL+ LVD+ + KLR AGFRS+ L + L +R+ + +
Sbjct: 73 LRQVEERGFVSRVVTSLNLRKALVDDATIAKLRVAGFRSQRHLTLFLFLRIALALALFAF 132
Query: 131 GIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLL 190
+++ G L E P +R+ A + Y+GF P +++ N KRQ+SI+RAWPDALDLL
Sbjct: 133 AALYVLGLGLLAEQPLMMRIVACVGAAYIGFVLPVMYLRNAATKRQASIQRAWPDALDLL 192
Query: 191 LICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDC 250
LICVESG SI+ + R+VAE+IG QS+ L+EE++LT AELS+LP R+ A++N RT ++
Sbjct: 193 LICVESGKSIEASFRKVAEEIGIQSIALAEELMLTCAELSYLPERRTAYDNLILRTDLEG 252
Query: 251 VRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVL 310
VR AL Q++RYGT IG +LR + E R R+ AEKKAA+L PKLTVPMI+FFLPVL
Sbjct: 253 VRATMTALTQAERYGTPIGSALRTMAQENRDLRMNAAEKKAAALPPKLTVPMIVFFLPVL 312
Query: 311 ILVIIGPAILSIIDTM 326
+ +I+ PA +S+ID M
Sbjct: 313 MAIILAPAAISMIDAM 328
>gi|220923700|ref|YP_002499002.1| type II secretion system protein [Methylobacterium nodulans ORS
2060]
gi|219948307|gb|ACL58699.1| type II secretion system protein [Methylobacterium nodulans ORS
2060]
Length = 321
Score = 272 bits (695), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 141/318 (44%), Positives = 205/318 (64%), Gaps = 2/318 (0%)
Query: 8 LFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDS 67
L ++L VA A+S F V P L L R++ VA E E +R ++ LQ
Sbjct: 5 LTSHSDLLVAGIAAISAFCACMVVSWPYLVRDPLASRLRQVADETEAIRIRERAKLQAGH 64
Query: 68 ASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIF 127
S LRT K ++ +LNL D +V +LR AG+R + + L VRL++P +
Sbjct: 65 GPS-LRTEPKKLFKDIFDRLNLARQAEDGAVVQRLRMAGYRGQGPVVTFLAVRLIMPFVM 123
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
+ + ++F +L + PF L++G + + Y+G+ AP++++ N + KRQ++I+RAWPDAL
Sbjct: 124 FAVAMFYVFVVLRL-DGPFVLKLGIALAVAYLGYYAPAIFVKNRISKRQTAIRRAWPDAL 182
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQ 247
DLLLICVESG+ ++ A R+VA++IG QS L+EE+ LT AELS+LP+R+ A+EN RT
Sbjct: 183 DLLLICVESGMGVESAFRKVADEIGPQSPELAEELSLTTAELSYLPDRRKAYENLAERTG 242
Query: 248 MDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFL 307
+D V+ +LIQ+++YGT +G +LRVL E R R+ EAEKKAA+L PKLTVPMI+FFL
Sbjct: 243 LDGVKGVVTSLIQAEKYGTPVGQTLRVLAQENRDMRMTEAEKKAAALPPKLTVPMILFFL 302
Query: 308 PVLILVIIGPAILSIIDT 325
PVL VII PA + I +T
Sbjct: 303 PVLFAVIITPAAIQIANT 320
>gi|307943150|ref|ZP_07658495.1| type II secretion system protein [Roseibium sp. TrichSKD4]
gi|307773946|gb|EFO33162.1| type II secretion system protein [Roseibium sp. TrichSKD4]
Length = 326
Score = 265 bits (676), Expect = 9e-69, Method: Compositional matrix adjust.
Identities = 136/327 (41%), Positives = 212/327 (64%), Gaps = 12/327 (3%)
Query: 6 FDLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILR---KQQITS 62
F D T++ AI + + +Y +++P L+ RMKSVA+ER+ +R + ++ +
Sbjct: 3 FAGMDFTQVITAIMAMICVSGTLYVLIMPLFERDGLKSRMKSVALERDEIRMRERARLNN 62
Query: 63 LQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLV 122
KD S ++ ++ +++ ++ NL+++L D+ + +L AGFR + + R+
Sbjct: 63 AGKDGRGSLRGSQPTQRMKDLTERFNLQSVLTDKEVKMRLAQAGFRGPGPIYKYALGRVF 122
Query: 123 VPIIFLILGIIW---IFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSI 179
P + ++ + + + GY L L VGA +G+ P++++ N ++KRQ +I
Sbjct: 123 APPVLFVVSLFYATAVMGYGFLT----GLLVGAAF--AGLGYFVPNIYLQNTIEKRQKAI 176
Query: 180 KRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAF 239
RAWPDALDL+LICVESG+SI+ A+++VA++IG QS L+EE+ LT AELS+L +R++AF
Sbjct: 177 GRAWPDALDLMLICVESGMSIEVAMQKVADEIGVQSADLAEELTLTTAELSYLQDRRIAF 236
Query: 240 ENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLT 299
EN NRT MD ++N ALIQ++RYGT + +LR + +TR +R+ EAEKKAASL PKLT
Sbjct: 237 ENLGNRTGMDNIKNVVMALIQAERYGTPVAKALRAMSDDTRDQRMQEAEKKAASLPPKLT 296
Query: 300 VPMIIFFLPVLILVIIGPAILSIIDTM 326
VPMI+FFLPVL VI+ PAIL I+D M
Sbjct: 297 VPMIVFFLPVLFAVIMTPAILQIMDVM 323
>gi|254504440|ref|ZP_05116591.1| Bacterial type II secretion system protein F domain [Labrenzia
alexandrii DFL-11]
gi|222440511|gb|EEE47190.1| Bacterial type II secretion system protein F domain [Labrenzia
alexandrii DFL-11]
Length = 324
Score = 263 bits (671), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 136/321 (42%), Positives = 204/321 (63%), Gaps = 21/321 (6%)
Query: 11 ATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASS 70
+ + A +++ I+++V+P L L+ RMK+VA+ER+ LR ++ LQ +
Sbjct: 8 SAQFLAAFLAMIAVTGTIFSLVMPLLSRDTLKSRMKNVALERDKLRAKERARLQTSQGDA 67
Query: 71 R--LRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFL 128
R LR + ++NFV +LNLK +L D++ ++LR AG+R + L R+ +P
Sbjct: 68 RMSLRNQPKAKMKNFVDRLNLKEMLADDSTQDRLRMAGYRGSAPIYYFLTARIAIP---- 123
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCA---------PSVWISNLVQKRQSSI 179
G +++F L Y F L + V FC P++++ N + KR+ I
Sbjct: 124 --GGLFVFA----LAYAFLLAPNTIPAFSKVLFCIVFSGLGAFFPNIYLKNQIDKRKLGI 177
Query: 180 KRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAF 239
+RAWPDALDL+LICVESG+SI+ A ++VAE+IG QSV L+EE+ LT AELS+L R++A+
Sbjct: 178 QRAWPDALDLMLICVESGMSIEAAFQKVAEEIGAQSVELAEELSLTTAELSYLSERRMAY 237
Query: 240 ENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLT 299
EN RT +D V+N ALIQ++RYGT +G ++R + +TR+ER+ AE+KAASL PKLT
Sbjct: 238 ENLAKRTGVDGVKNVMMALIQAERYGTPVGTAIRNMADDTRAERMQFAEQKAASLPPKLT 297
Query: 300 VPMIIFFLPVLILVIIGPAIL 320
VPMI+FFLPVL VI+ PA++
Sbjct: 298 VPMIMFFLPVLFFVILTPAVI 318
>gi|254473723|ref|ZP_05087118.1| type II secretion system protein [Pseudovibrio sp. JE062]
gi|211957109|gb|EEA92314.1| type II secretion system protein [Pseudovibrio sp. JE062]
Length = 324
Score = 258 bits (659), Expect = 8e-67, Method: Compositional matrix adjust.
Identities = 129/307 (42%), Positives = 203/307 (66%), Gaps = 3/307 (0%)
Query: 18 ITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSR--LRTR 75
+ T +++ ++A++ P +L+ RMKSVA+ER+ +R ++ L ++ + R LR+
Sbjct: 15 VLTLIAVSGTVFALLSPLFERDDLKSRMKSVALERDKIRSRERNRLAQEKENQRVSLRSN 74
Query: 76 DSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWI 135
+R FV K +LK +L +N+ KL+ AG+R L L +++++P+ F ++
Sbjct: 75 PKDGVREFVDKYDLKKLLSSDNVAKKLKMAGYRGVSPLYTYLFLQIILPVAFFAASFFYL 134
Query: 136 FGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVE 195
+L + PF V + + +GF PS+ + N V KRQ SI+ AWPDA+DL+LICVE
Sbjct: 135 VVILQL-DIPFAGVVACSLGVAAIGFYGPSIIVQNKVMKRQESIRLAWPDAMDLMLICVE 193
Query: 196 SGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNAT 255
SG+SI+ A ++VAE++G QS L+EE++L AELS+L R+ A++N RT +D V+N
Sbjct: 194 SGMSIEAAFKKVAEEVGPQSTALAEELILANAELSYLDERRKAYQNLAERTGLDGVKNVV 253
Query: 256 QALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVII 315
AL Q+++YGT IG +LRVL E+R ER+ EAE+KAA+L PKLTVPM++FFLPVL +V+I
Sbjct: 254 VALSQAEKYGTPIGYALRVLSEESRQERMQEAERKAAALPPKLTVPMMLFFLPVLFIVLI 313
Query: 316 GPAILSI 322
PA++ +
Sbjct: 314 APAVIKV 320
>gi|188581665|ref|YP_001925110.1| type II secretion system protein [Methylobacterium populi BJ001]
gi|179345163|gb|ACB80575.1| type II secretion system protein [Methylobacterium populi BJ001]
Length = 323
Score = 258 bits (659), Expect = 9e-67, Method: Compositional matrix adjust.
Identities = 140/316 (44%), Positives = 202/316 (63%), Gaps = 8/316 (2%)
Query: 7 DLFDATELA----VAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITS 62
D F A LA A+ T ++ + ++ +V P L +L KRMK V+ ERE +R+++
Sbjct: 3 DEFVAIALAPRTVAAVLTGIAAAATVFTLVQPLLEGDQLAKRMKLVSDEREQIRQRERER 62
Query: 63 LQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLV 122
L ++ LR ++ V++ NL L E KL AG+R + L RLV
Sbjct: 63 LNSRAS---LRVEPKAYMKRVVEQFNLSRWLGTETAKAKLVRAGYRGGGAETAFLFFRLV 119
Query: 123 VPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRA 182
+PI + + ++F + +L+ P +R G V+ G+ GF P V++SN+ KRQ+ I+RA
Sbjct: 120 MPIAVTAVALFYLFLLE-VLDQPLMVRAGLVLAAGFFGFKLPEVYLSNMTTKRQAEIRRA 178
Query: 183 WPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENF 242
WPDALDL LICVESG+S++ A RRV+ +I QS L+EE+ L AELSFLP R+VA+EN
Sbjct: 179 WPDALDLCLICVESGMSVENAFRRVSLEIASQSTVLAEELALLTAELSFLPERRVAYENL 238
Query: 243 YNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPM 302
RT ++ V++ T AL+Q++RYGT +G +LRVL E+R R+ EAEKKAA+L PKLTVPM
Sbjct: 239 ALRTGLESVKSLTTALMQAERYGTPVGQALRVLAQESRDFRMTEAEKKAAALPPKLTVPM 298
Query: 303 IIFFLPVLILVIIGPA 318
I+FFLPVL +V++ PA
Sbjct: 299 ILFFLPVLFVVLLTPA 314
>gi|304392379|ref|ZP_07374320.1| type II secretion system protein [Ahrensia sp. R2A130]
gi|303295483|gb|EFL89842.1| type II secretion system protein [Ahrensia sp. R2A130]
Length = 328
Score = 254 bits (648), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 138/322 (42%), Positives = 200/322 (62%), Gaps = 7/322 (2%)
Query: 5 FFDLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQ 64
FD+ + +A+T ++ F+ ++ +P L LE RMKSVA+ER+ LR ++ +Q
Sbjct: 1 MFDIITQPQNLIAMTVTLACFATALSIAMPLLAKDPLEGRMKSVALERDKLRARERAKIQ 60
Query: 65 KDSASSRLRTRDSKSLRN-----FVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVV 119
D + R K+ N V+KLNL+ L DEN L AG+R L I L +
Sbjct: 61 ADKQKAGQRVGAKKAEANSAITGLVEKLNLRTALADENTEAMLVHAGYRGSKPLFIFLAL 120
Query: 120 RLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILI-GYVGFCAPSVWISNLVQKRQSS 178
R +P++FL L I++ + E + +G L+ G +GF P + + ++ RQ S
Sbjct: 121 RFALPLVFLALTAIYLLFLSERTEGD-TMTIGIKCLVAGAIGFYLPILVVKQKMKARQLS 179
Query: 179 IKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVA 238
I ++WPDALDL LICVESG+SI+ A R+VA +IG QS PL+EE+++T AELSFL R+ A
Sbjct: 180 ISQSWPDALDLSLICVESGMSIEVAFRKVASEIGAQSPPLAEELMITTAELSFLQERKHA 239
Query: 239 FENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKL 298
++N RT ++ V+N +L+QS++YGT + +LRVL E R R+ AEKKAA LGPKL
Sbjct: 240 YDNLVYRTGLESVKNVVLSLVQSEKYGTPLSVALRVLSQENRDTRMAMAEKKAAGLGPKL 299
Query: 299 TVPMIIFFLPVLILVIIGPAIL 320
TVPM+I FLPVL VI+GPA++
Sbjct: 300 TVPMMICFLPVLFCVILGPAVI 321
>gi|329847258|ref|ZP_08262286.1| bacterial type II secretion system protein F domain protein
[Asticcacaulis biprosthecum C19]
gi|328842321|gb|EGF91890.1| bacterial type II secretion system protein F domain protein
[Asticcacaulis biprosthecum C19]
Length = 343
Score = 254 bits (648), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 138/322 (42%), Positives = 202/322 (62%), Gaps = 11/322 (3%)
Query: 12 TELAVAITT-----AVSIFSLIYAVVI---PSLGSGE-LEKRMKSVAVEREILRKQQITS 62
TE A I A+++ L++ VI S+ SGE L+KR+K+VA RE LR+Q
Sbjct: 2 TEFASTIMNPSNLIAIAVAVLVFFTVITLGKSMTSGEQLDKRLKAVAQRREELRRQSRQQ 61
Query: 63 LQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLV 122
+ K+ S LR +D R FV K NL+ +L D + L AGFR ++ R +
Sbjct: 62 IVKEQ-SGGLRHKDDGMARGFVDKFNLRKLLEDPKVAENLAMAGFRGPKPISTFYFFRFL 120
Query: 123 VPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRA 182
+P + L +IF + + +++ + + G+ AP+++ISN KR+ SI A
Sbjct: 121 MPFVLGALATFYIFVVNDFGQ-KMNMKILICVAMFVAGYYAPNIYISNTASKRRQSIVAA 179
Query: 183 WPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENF 242
+PDALDLLLICVE+G+SI+ AL +V+++IGG S+PL+EEM L +AELS+LP R+ A+E F
Sbjct: 180 FPDALDLLLICVEAGMSIETALHKVSQEIGGTSIPLAEEMSLLVAELSYLPERRQAYEGF 239
Query: 243 YNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPM 302
RT +++ A+IQ+++YGT +G +LRV+ E R RL AEKKAA+L +LTVPM
Sbjct: 240 SKRTSHPGIKSVCTAMIQAEKYGTPLGTALRVMAKENRELRLSAAEKKAAALPAQLTVPM 299
Query: 303 IIFFLPVLILVIIGPAILSIID 324
I+FFLPVL +VI+GPA L +ID
Sbjct: 300 IVFFLPVLFVVILGPAALKVID 321
>gi|300021859|ref|YP_003754470.1| type II secretion system protein F [Hyphomicrobium denitrificans
ATCC 51888]
gi|299523680|gb|ADJ22149.1| Type II secretion system F domain protein [Hyphomicrobium
denitrificans ATCC 51888]
Length = 326
Score = 254 bits (648), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 134/318 (42%), Positives = 201/318 (63%), Gaps = 12/318 (3%)
Query: 2 PHYFFDLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQIT 61
PH F AT LA AV +F+ + ++ +P L ++ +RMK +AVER +R ++
Sbjct: 11 PH-----FVATMLA-----AVCVFATVLSIALPMLQRDQMNRRMKEMAVERGKMRSARLA 60
Query: 62 SL-QKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVR 120
+ KD S++LR ++ V +L L+ ++ I L+ AG R + ++ L R
Sbjct: 61 EMSSKDRPSNKLRPTAKGFMQRIVDELKLRERFDNDEIRENLKRAGLRGQANIVTFLFFR 120
Query: 121 LVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIK 180
+ PII L + ++F P + VG + G++GF P+V+ISN VQKRQ+SIK
Sbjct: 121 VAAPIIIFFLALFYVFVLYDTGHAPI-VNVGIALGAGFLGFYLPNVFISNRVQKRQTSIK 179
Query: 181 RAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFE 240
+A+PDALD+LLICV+SG+S++ A +V ++I QS+ L+EEM LT AELS+L +R+ A+E
Sbjct: 180 QAFPDALDMLLICVQSGMSVEAAFAKVGKEIANQSIELAEEMALTTAELSYLQDRRQAYE 239
Query: 241 NFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV 300
N RT + V+ AL+Q++RYGT +G +LR + E R R EAE+KA++L PKLTV
Sbjct: 240 NLAKRTGLPGVKGVATALVQAERYGTPVGQALRTMAKENREIRQSEAERKASALPPKLTV 299
Query: 301 PMIIFFLPVLILVIIGPA 318
PMI+FFLPVL +VI+GPA
Sbjct: 300 PMIVFFLPVLFIVILGPA 317
>gi|83859362|ref|ZP_00952883.1| hypothetical protein OA2633_13195 [Oceanicaulis alexandrii
HTCC2633]
gi|83852809|gb|EAP90662.1| hypothetical protein OA2633_13195 [Oceanicaulis alexandrii
HTCC2633]
Length = 326
Score = 253 bits (647), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 133/308 (43%), Positives = 202/308 (65%), Gaps = 4/308 (1%)
Query: 17 AITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSR--LRT 74
A+ A +F+ ++ + P++G L KRMK+VA RE LR++ L+K + + LR
Sbjct: 16 AVIAAGLVFATVWTLSAPAMGGDNLNKRMKAVANRREELRRKAREELEKSANEKKGGLRG 75
Query: 75 RDSKSL-RNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGII 133
+D++SL R V+KLNL +L D N+ KL AG+R + + R +P + +LG +
Sbjct: 76 KDTRSLYRKVVEKLNLATLLEDANLKTKLIQAGYRGQGPVYAFYFARFAIPPVMGLLGFV 135
Query: 134 WIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLIC 193
+++ + P R+ V+++ +G+ AP +++SN KR+ SI +A+PD+LDL+LIC
Sbjct: 136 YLWVVNDF-GLPVMQRLTIVMVLAVLGYYAPGIYLSNQAAKRRDSIMQAFPDSLDLMLIC 194
Query: 194 VESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRN 253
VE+G+SI+ AL +VA +IG S+ L+EE+ LT AEL++L +R+ AFEN RT + V+
Sbjct: 195 VEAGMSIEAALHKVAAEIGTNSMELAEELSLTNAELAYLQDRRAAFENLGMRTNLPGVKA 254
Query: 254 ATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILV 313
ALIQ++RYGT +G +LRV+ E R R+ AEKKAA+L KLTVPMI+FFLPVL +V
Sbjct: 255 VATALIQAERYGTPLGQALRVMAKENRDMRMSNAEKKAAALPAKLTVPMILFFLPVLFVV 314
Query: 314 IIGPAILS 321
IIGPA +S
Sbjct: 315 IIGPAAIS 322
>gi|163851908|ref|YP_001639951.1| type II secretion system protein [Methylobacterium extorquens PA1]
gi|218530659|ref|YP_002421475.1| type II secretion system protein [Methylobacterium chloromethanicum
CM4]
gi|240139031|ref|YP_002963506.1| hypothetical protein MexAM1_META1p2450 [Methylobacterium extorquens
AM1]
gi|254561626|ref|YP_003068721.1| hypothetical protein METDI3213 [Methylobacterium extorquens DM4]
gi|163663513|gb|ABY30880.1| type II secretion system protein [Methylobacterium extorquens PA1]
gi|218522962|gb|ACK83547.1| type II secretion system protein [Methylobacterium chloromethanicum
CM4]
gi|240009003|gb|ACS40229.1| conserved hypothetical protein; putative membrane protein
[Methylobacterium extorquens AM1]
gi|254268904|emb|CAX24865.1| conserved hypothetical protein; putative membrane protein
[Methylobacterium extorquens DM4]
Length = 323
Score = 253 bits (647), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 133/294 (45%), Positives = 192/294 (65%), Gaps = 4/294 (1%)
Query: 34 PSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAIL 93
P + L KRMK V+ ERE +R+++ L ++ + LR ++ V++ NL L
Sbjct: 34 PLIEGDPLAKRMKLVSDEREQIRQRERERL---NSRTTLRAEPKAYMKRVVEQFNLGRWL 90
Query: 94 VDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAV 153
E KL AG+R + L RLV+PI + + ++F + +L+ PF +R+G V
Sbjct: 91 GTETAKAKLIRAGYRGAGAETAFLFFRLVMPITLTAVALFYLFVLE-VLDQPFVIRLGLV 149
Query: 154 ILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGG 213
G+ G P V++SN+ KRQ+ I+RAWPDALDL LICVESG+S++ A RRV+ ++
Sbjct: 150 FAAGFFGLKLPEVYLSNITSKRQAEIRRAWPDALDLCLICVESGMSVENAFRRVSLEVAS 209
Query: 214 QSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLR 273
QS L+EE+ L AELSFLP R+VA+EN RT ++ V++ T AL+Q++RYGT +G +LR
Sbjct: 210 QSAVLAEELALLTAELSFLPERRVAYENLALRTGLEIVKSLTTALMQAERYGTPVGQALR 269
Query: 274 VLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
VL E+R R+ EAEKKAASL PKLTVPMI+FFLPVL +V++ PA + + + MK
Sbjct: 270 VLAQESRDYRMTEAEKKAASLPPKLTVPMILFFLPVLFVVLLTPAGIQVYEAMK 323
>gi|315497460|ref|YP_004086264.1| type II secretion system f domain protein [Asticcacaulis
excentricus CB 48]
gi|315415472|gb|ADU12113.1| Type II secretion system F domain protein [Asticcacaulis
excentricus CB 48]
Length = 326
Score = 252 bits (644), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 136/326 (41%), Positives = 207/326 (63%), Gaps = 3/326 (0%)
Query: 1 MPHYFFDLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQI 60
M F L L +A+ A+ F + ++ SL +L+KRMK+VA RE LR+Q
Sbjct: 1 MKELAFTLMQPANL-IALVVAILAFLAVLTLLRSSLSGEQLDKRMKAVAQRREELRRQSR 59
Query: 61 TSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVR 120
S+ + S +S LR D + V +LNLK +L D +V+KL AGFR + R
Sbjct: 60 QSMVQAS-NSGLRQTDESLYKRIVDRLNLKTLLEDPKVVDKLAMAGFRGPKPITTFYFFR 118
Query: 121 LVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIK 180
++P + L +I+ + + P +++ + + G+ AP+++ISN KR++SI
Sbjct: 119 FLMPFVMGALSTFYIYVVNDFGQPP-NIKILICVAMFVAGYYAPNIYISNAASKRRASIV 177
Query: 181 RAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFE 240
A+PDALDLLLICVE+G+SI+ AL++V+++IG S+ L+EE+ L +AELS+LP R++A+E
Sbjct: 178 TAFPDALDLLLICVEAGMSIEAALQKVSQEIGSASIELAEELSLLVAELSYLPERRMAYE 237
Query: 241 NFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV 300
RT +++ A+IQ+++YGT +G +LRV+ E R RL AEKKAA+L +LTV
Sbjct: 238 GLARRTNYPGIKSVCTAMIQAEKYGTPLGTALRVMAKENRELRLSAAEKKAAALPAQLTV 297
Query: 301 PMIIFFLPVLILVIIGPAILSIIDTM 326
PMI+FFLPVL +VI+GPAIL+I+D M
Sbjct: 298 PMIVFFLPVLFVVILGPAILNIMDMM 323
>gi|114798130|ref|YP_761686.1| type II secretion system protein [Hyphomonas neptunium ATCC 15444]
gi|114738304|gb|ABI76429.1| type II secretion system protein [Hyphomonas neptunium ATCC 15444]
Length = 339
Score = 252 bits (643), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 133/310 (42%), Positives = 191/310 (61%), Gaps = 15/310 (4%)
Query: 25 FSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFV 84
F + +P L +LE R+K+VA +RE LRKQ +L+K LR +D + +
Sbjct: 24 FGTFMTIFLPYLQGNKLETRLKAVASQREKLRKQSRAALEKKG----LRRKDDSVVGSIS 79
Query: 85 KKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIF-----GYD 139
KLNL L D N+V + AG R ++ R+ +P L +IF G
Sbjct: 80 SKLNLAQALEDPNVVKLMNQAGLRGPGPISAFYFARMAMPFAGAGLMFFYIFFVNDHGLS 139
Query: 140 KLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGIS 199
+ ++Y G+VI GF AP+++ISNL QKRQ S+ RA+PDALD+LLICVE+G+S
Sbjct: 140 QFMKY------GSVIFGAAAGFYAPNLYISNLAQKRQKSLMRAFPDALDMLLICVEAGMS 193
Query: 200 IDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALI 259
I+ +V+++IG S L+EE +T+AELS+LP+R++A+EN RT + V+ AL
Sbjct: 194 IEMGFNKVSQEIGSASPELAEEFGITVAELSYLPDRRLAYENLALRTGHEGVKAVCMALG 253
Query: 260 QSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAI 319
Q++RYGT +GD+LR++ E R R+ EAEKKAASL KLTVPMI+FFLPVL LV++GPA
Sbjct: 254 QAERYGTPLGDALRMMAKENREMRMSEAEKKAASLPAKLTVPMILFFLPVLFLVVLGPAY 313
Query: 320 LSIIDTMKDH 329
+ K++
Sbjct: 314 IQYQAMQKEN 323
>gi|148258240|ref|YP_001242825.1| putative pilus assembly protein [Bradyrhizobium sp. BTAi1]
gi|146410413|gb|ABQ38919.1| putative pilus assembly protein [Bradyrhizobium sp. BTAi1]
Length = 324
Score = 251 bits (642), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 135/316 (42%), Positives = 195/316 (61%), Gaps = 12/316 (3%)
Query: 2 PHYFFDLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQIT 61
PH+ LF A++ + +Y +++P L KRMK+VA ERE +++++
Sbjct: 12 PHFMTMLF----------AAIAASATVYTLIMPLFAGENLNKRMKAVASERERIKQRERE 61
Query: 62 SLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRL 121
+ S LR + + V NL L E KL AG+R + L RL
Sbjct: 62 RMNAGEKVS-LRQTPKQLVAKVVDDFNLTKWLAQEAAREKLIMAGYRGQAPYITFLFARL 120
Query: 122 VVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKR 181
V P++ + ++++F L + +++G I + Y+G AP +++SN + KRQ SIKR
Sbjct: 121 VTPVVLFVGSVLYVFVIANL-QKSLPIKIGICIGMAYLGLQAPMLFLSNAISKRQLSIKR 179
Query: 182 AWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFEN 241
A+PDALDLLLIC+ESG+SI+ A R+V+ +I QS+ LSEE LT AELS+L +R+VA+EN
Sbjct: 180 AFPDALDLLLICIESGMSIEAAFRKVSMEIASQSIALSEEFTLTTAELSYLQDRKVAYEN 239
Query: 242 FYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVP 301
RT ++ V++ AL QS+RYGT +G SLRV+ E R R+ EAEKKAA+L PKLTVP
Sbjct: 240 LARRTGLEGVKSVCLALQQSERYGTPLGQSLRVMAQENRDMRMNEAEKKAAALPPKLTVP 299
Query: 302 MIIFFLPVLILVIIGP 317
MI+FFLPVL +VI+GP
Sbjct: 300 MILFFLPVLFVVILGP 315
>gi|115525754|ref|YP_782665.1| type II secretion system protein [Rhodopseudomonas palustris
BisA53]
gi|115519701|gb|ABJ07685.1| type II secretion system protein [Rhodopseudomonas palustris
BisA53]
Length = 324
Score = 250 bits (638), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 140/317 (44%), Positives = 201/317 (63%), Gaps = 2/317 (0%)
Query: 1 MPHYFFDLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQI 60
M + D F + + A++ + +Y ++ P + L KRMK+VA ERE +R+++
Sbjct: 1 MFNLLIDKFHDPRFMMMLFAAIAASATVYTLITPLFANEGLNKRMKTVASERERIRQRER 60
Query: 61 TSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVR 120
L K S LR + + V+ NL + EN KL AG+R + L R
Sbjct: 61 DRLAKTERVS-LRQSPKRLVAKVVEDFNLGKWVAQENARQKLLMAGYRGQAPYVTFLFFR 119
Query: 121 LVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIK 180
+V P+IFL+ +++F K+ P L++ I ++G AP ++++N + KRQ SIK
Sbjct: 120 MVTPLIFLVATALYVFLVAKM-NQPTALKIAICIAATFLGMQAPMLFLTNAISKRQLSIK 178
Query: 181 RAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFE 240
RA+PDALDLLLICVESG+SI+ A R+V+ +IG QS+PL+EE LT AELS+L +R+VA+E
Sbjct: 179 RAFPDALDLLLICVESGMSIEVAFRKVSVEIGTQSIPLAEEFTLTTAELSYLQDRKVAYE 238
Query: 241 NFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV 300
N RT ++ V++ AL QS+RYGT +G SLRV+ E R R+ EAEKKAA+L PKLTV
Sbjct: 239 NLAKRTGLEGVKSVCLALQQSERYGTPLGQSLRVMAQENRDMRMNEAEKKAAALPPKLTV 298
Query: 301 PMIIFFLPVLILVIIGP 317
PMI+FFLPVL +VI+GP
Sbjct: 299 PMILFFLPVLFVVILGP 315
>gi|146338118|ref|YP_001203166.1| putative pilus assembly protein membrane protein [Bradyrhizobium
sp. ORS278]
gi|146190924|emb|CAL74929.1| putative pilus assembly protein; putative membrane protein
[Bradyrhizobium sp. ORS278]
Length = 324
Score = 249 bits (637), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 136/316 (43%), Positives = 194/316 (61%), Gaps = 12/316 (3%)
Query: 2 PHYFFDLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQIT 61
PH+ F A++ + +Y +++P L KRMK+VA ERE +++++
Sbjct: 12 PHFMTMFF----------AAIAASATVYTLIMPLFAGENLNKRMKAVASERERIKQRERE 61
Query: 62 SLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRL 121
L S LR + + V NL L E +KL AG+R + L RL
Sbjct: 62 RLNAGEKVS-LRQTPKQLVAKVVDDFNLTKWLAQEAARDKLIMAGYRGQAPYITFLFGRL 120
Query: 122 VVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKR 181
V P++ ++++F L E +++G + + Y+G AP +++SN + KRQ SI+R
Sbjct: 121 VTPVVLFAGSVLYVFVIAHL-EKSMPVKIGICVGMAYLGLQAPMLFLSNAISKRQLSIRR 179
Query: 182 AWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFEN 241
A+PDALDLLLIC+ESG+SI+ A RRVA +I QS+ LSEE LT AELS+L +R+VA+EN
Sbjct: 180 AFPDALDLLLICIESGMSIEAAFRRVAIEISSQSIALSEEFTLTTAELSYLQDRKVAYEN 239
Query: 242 FYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVP 301
RT ++ V++ AL QS+RYGT +G SLRV+ E R R+ EAEKKAA+L PKLTVP
Sbjct: 240 LARRTGLEGVKSVCLALQQSERYGTPLGQSLRVMAQENRDMRMNEAEKKAAALPPKLTVP 299
Query: 302 MIIFFLPVLILVIIGP 317
MI+FFLPVL +VI+GP
Sbjct: 300 MILFFLPVLFVVILGP 315
>gi|167648147|ref|YP_001685810.1| type II secretion system protein [Caulobacter sp. K31]
gi|167350577|gb|ABZ73312.1| type II secretion system protein [Caulobacter sp. K31]
Length = 328
Score = 249 bits (636), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 136/320 (42%), Positives = 200/320 (62%), Gaps = 2/320 (0%)
Query: 7 DLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKD 66
+L D T L A A+ +F+ I + P L S LE R+KSVA RE LR++ ++ +
Sbjct: 4 ELTDPTNLLSAFI-AIVVFATIVTLAAPMLSSNGLEGRLKSVANRREELRRRSREAMSQK 62
Query: 67 SASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPII 126
LR D +N V +L L +L D +V+KL AGFR ++ R V+P
Sbjct: 63 GGGGTLRHADEGMYKNVVDRLQLSRLLEDPKVVDKLAQAGFRGPKPVSTFYFFRFVMPFA 122
Query: 127 FLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDA 186
F ++ +++ + P Q ++ A VG+ AP+++ISN+ QKR+ SI A+PDA
Sbjct: 123 FALVAAFYLYVINGFGLLPVQ-KIAACFFALTVGYYAPNIYISNIAQKRRESIVAAFPDA 181
Query: 187 LDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRT 246
LDL+LICVESG+SI+ A+ +V ++GG S+ L+EE+ L AELS+LP R++A+E RT
Sbjct: 182 LDLMLICVESGMSIEAAIAKVGAEVGGASIELAEELSLLTAELSYLPERRLAYEGLARRT 241
Query: 247 QMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFF 306
+R+ A+IQ++RYGT +G +LRV+ E R RL AEKKAA+L KLTVPMI+FF
Sbjct: 242 NHPGIRSVVTAMIQAERYGTPLGAALRVMAKENRDLRLSAAEKKAAALPAKLTVPMILFF 301
Query: 307 LPVLILVIIGPAILSIIDTM 326
LPVL +VI+GPA ++I+D +
Sbjct: 302 LPVLFIVIMGPAAINIMDAI 321
>gi|154250694|ref|YP_001411518.1| type II secretion system protein [Parvibaculum lavamentivorans
DS-1]
gi|154154644|gb|ABS61861.1| type II secretion system protein [Parvibaculum lavamentivorans
DS-1]
Length = 322
Score = 248 bits (634), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 129/308 (41%), Positives = 195/308 (63%), Gaps = 3/308 (0%)
Query: 13 ELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRL 72
E V + TAV+ F+ I+ + P L + +L RMK V+ ERE +R + +L ++ +RL
Sbjct: 12 ENVVTLLTAVAAFATIFTLTAPLLNTDKLSTRMKYVSTEREAMRARAREALAQEK--TRL 69
Query: 73 RTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGI 132
R ++ V+K +L + + KLR AGFR + + R V+P + ++ +
Sbjct: 70 RHTPKGFIKQVVEKFASGNMLENAAVKEKLRQAGFRGPGPMYTFVFFRFVMPPVLFVVTL 129
Query: 133 IWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLI 192
+++ + P R+ +VGF P++++ N++ +RQ SI++A+PDALDL+LI
Sbjct: 130 LYMVFVNDFGLQPMA-RLAVSCAAAFVGFYLPNLFVENVISRRQDSIRKAFPDALDLMLI 188
Query: 193 CVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVR 252
CVESG+SI+ A ++VA +IG QSV L+EE+ LT AELS+L R++A+EN RT + V+
Sbjct: 189 CVESGMSIEAAFQKVAAEIGAQSVELAEELGLTTAELSYLQERRMAYENLARRTGLPGVK 248
Query: 253 NATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLIL 312
LIQ++RYGT +G +LRV+ E R R+ EAEKKAA L PKLTVPMI+FFLPVL
Sbjct: 249 AVATTLIQAERYGTPLGQALRVMAQENRDMRMAEAEKKAAGLPPKLTVPMILFFLPVLFG 308
Query: 313 VIIGPAIL 320
VI+GPAI+
Sbjct: 309 VILGPAII 316
>gi|110632959|ref|YP_673167.1| type II secretion system protein [Mesorhizobium sp. BNC1]
gi|110283943|gb|ABG62002.1| type II secretion system protein [Chelativorans sp. BNC1]
Length = 323
Score = 248 bits (634), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 135/306 (44%), Positives = 190/306 (62%), Gaps = 1/306 (0%)
Query: 17 AITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRD 76
A+ AV+ FS + V P L L +RM V ERE+LRKQ+ L LR+
Sbjct: 15 ALMAAVAAFSSVIVVSWPYLFRDNLARRMAKVENERELLRKQERARLAMQKRLPSLRSEP 74
Query: 77 SKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIF 136
K + V + L + +V++LR AG+R + L VRL+ PI + + ++
Sbjct: 75 RKLFKQIVDRFKLAKQGDNGQLVDRLRRAGYRGNAPVITFLAVRLIAPIAIFAVSLTYVL 134
Query: 137 GYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVES 196
K + P +G +G G+ P+++I N + KRQ +I+RAWP+ALDLLLICVES
Sbjct: 135 LILKP-DLPLFAILGIAAALGGFGYFVPALYIRNKITKRQKAIQRAWPEALDLLLICVES 193
Query: 197 GISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQ 256
G+SI+ A R+VAE+IG QS ++EE+ LT AELSFL +R+ A+EN RT ++ VR A
Sbjct: 194 GMSIESAFRKVAEEIGTQSAEIAEEIALTTAELSFLQDRRQAYENLGRRTGVEGVRAAVT 253
Query: 257 ALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIG 316
+LIQ+++YGT +G +LRV+ E R R+ EAEK+AA+L PKLTVPMI+FFLPVL VII
Sbjct: 254 SLIQAEKYGTPLGQALRVMAQENRDMRMSEAEKRAAALPPKLTVPMIVFFLPVLFAVIIT 313
Query: 317 PAILSI 322
PA + I
Sbjct: 314 PAAIQI 319
>gi|170740616|ref|YP_001769271.1| type II secretion system protein [Methylobacterium sp. 4-46]
gi|168194890|gb|ACA16837.1| type II secretion system protein [Methylobacterium sp. 4-46]
Length = 321
Score = 248 bits (632), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 130/289 (44%), Positives = 189/289 (65%), Gaps = 4/289 (1%)
Query: 34 PSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAIL 93
P L L +RMKSV ER+ +R ++ L + LR + ++ V++ L L
Sbjct: 33 PFLEPNRLAQRMKSVGEERDRIRLRERDRLNQ---RGNLRQQPKAYMKRVVERFKLDNWL 89
Query: 94 VDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAV 153
E+ N+L AG+R + L RLV+P+ FL+L + ++F ++L PF +R+ V
Sbjct: 90 ATEDAKNRLMMAGYRGPQAETAFLFFRLVMPLGFLVLAVFYLFVL-QVLNQPFSIRLLIV 148
Query: 154 ILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGG 213
I Y G AP +++ N KRQ+ I++ WPDALDLLLICVESG++I+ A RRV ++
Sbjct: 149 IAATYGGVKAPEIFLKNQTDKRQAQIRKNWPDALDLLLICVESGMAIELAFRRVGVEMAN 208
Query: 214 QSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLR 273
QS+ L+EE+ LT AELS+L +R+VA++N RT +D V+ ALIQ++RYGT IG +LR
Sbjct: 209 QSIVLAEELALTTAELSYLTDRRVAYDNLAIRTGLDSVKAVCTALIQAERYGTPIGQALR 268
Query: 274 VLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
VL E+R +R+ EAEKKAA+L PKLTVPMI+FFLPVL +VI+ PA++ +
Sbjct: 269 VLAQESRDQRMNEAEKKAAALPPKLTVPMILFFLPVLFVVILTPAMVQV 317
>gi|209886535|ref|YP_002290392.1| type II secretion system protein [Oligotropha carboxidovorans OM5]
gi|209874731|gb|ACI94527.1| type II secretion system protein [Oligotropha carboxidovorans OM5]
Length = 325
Score = 247 bits (630), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 136/294 (46%), Positives = 193/294 (65%), Gaps = 2/294 (0%)
Query: 34 PSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAIL 93
P L +RMK+VA ERE +R+++ + ++ + LR + ++ V++ NL L
Sbjct: 34 PMFAGDGLARRMKAVASERERMRQRERERMNRNEKVT-LRQSPKQVVQRVVERFNLGKWL 92
Query: 94 VDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAV 153
E KL AG+R L RLV P++FLI ++IF L E +++G
Sbjct: 93 AQEEAKEKLIMAGYRGHAPYVTFLFFRLVAPVVFLIATALYIFVILNL-EQTMTIKIGIC 151
Query: 154 ILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGG 213
IL ++G AP +++ N + KRQ SIKRA+PDALDLLLICVESG+SI+ A R+V+ +IG
Sbjct: 152 ILAAWLGMQAPMLFLKNAISKRQLSIKRAFPDALDLLLICVESGMSIEAAFRKVSVEIGS 211
Query: 214 QSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLR 273
QSVPL+EE+ LT AELS+L +R++A+EN RT ++ V++ AL+QS+RYGT +G +LR
Sbjct: 212 QSVPLAEELTLTTAELSYLQDRKMAYENLQKRTGLEGVKSVCMALMQSERYGTPLGQTLR 271
Query: 274 VLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
V+ E R R+ EAEKKAASL PKLTVPMI+FFLPVL +VI+GP + + MK
Sbjct: 272 VMAQENRDMRMNEAEKKAASLPPKLTVPMIVFFLPVLFVVILGPTWIKVAAYMK 325
>gi|27376545|ref|NP_768074.1| pilus assemble protein [Bradyrhizobium japonicum USDA 110]
gi|27349686|dbj|BAC46699.1| pilus assemble protein [Bradyrhizobium japonicum USDA 110]
Length = 324
Score = 245 bits (626), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 136/302 (45%), Positives = 194/302 (64%), Gaps = 2/302 (0%)
Query: 21 AVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSL 80
A++ + +Y +V+P L KRMK+VA ERE +R+++ L K S LR + +
Sbjct: 21 AIAASATVYTLVMPLFAGEGLSKRMKAVASERERIRQRERERLNKSEKVS-LRQTPKQLV 79
Query: 81 RNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDK 140
V+ NL L E +KL AG+R + L R+V PI + ++++F
Sbjct: 80 SKVVEDFNLTKWLAQEAARDKLIMAGYRGQAPYITFLFARMVAPITLFVGSVLYVFLIAH 139
Query: 141 LLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISI 200
+ E P +++G I Y+G AP +++ N + KRQ SIKRA+PDALDLLLIC+ESG+S+
Sbjct: 140 M-EKPVPVKIGICIGAAYLGLQAPMLFLKNAISKRQLSIKRAFPDALDLLLICIESGMSV 198
Query: 201 DQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQ 260
+ A R+VA +I GQS+ LSEE LT AELS+L +R+VA+EN RT ++ V++ AL Q
Sbjct: 199 EMAFRKVATEIVGQSIALSEEFTLTTAELSYLQDRKVAYENLARRTGLEGVKSVCLALQQ 258
Query: 261 SDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAIL 320
++RYGT +G SLRV+ E R R+ EAEKKAA+L PKLTVPMI+FFLPVL +VI+GP +
Sbjct: 259 AERYGTPLGHSLRVMAQENRDMRMTEAEKKAAALPPKLTVPMILFFLPVLFVVILGPTGI 318
Query: 321 SI 322
I
Sbjct: 319 KI 320
>gi|85713510|ref|ZP_01044500.1| type II secretion system protein [Nitrobacter sp. Nb-311A]
gi|85699414|gb|EAQ37281.1| type II secretion system protein [Nitrobacter sp. Nb-311A]
Length = 325
Score = 245 bits (625), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 138/318 (43%), Positives = 197/318 (61%), Gaps = 2/318 (0%)
Query: 9 FDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSA 68
F + + A++ + +Y ++ P + L KRMK+VA ERE +R+++ L K
Sbjct: 9 FHDPQFMTMVLAAIAASATVYTLITPFFAADGLTKRMKAVASERERIRQRERERLSKSEK 68
Query: 69 SSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFL 128
S LR + + V+ LNL + E KL AG+R + L R+V PI+ L
Sbjct: 69 VS-LRQAPKQFVSKIVEDLNLGKWVAQEAAREKLVMAGYRGQAPYVTFLFFRMVTPIVML 127
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
I I ++F + P +++G I + G AP +++ N + KRQ SIKRA+PDALD
Sbjct: 128 IGAIAYVFLLSHT-QQPTHVKIGICIGATFFGLQAPMLFLKNAITKRQLSIKRAFPDALD 186
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
LLLIC+ESG+SI+ A R+V+ +IG QSV L+EE LT AELS+L +R++A+EN NRT +
Sbjct: 187 LLLICLESGMSIEVAFRKVSTEIGNQSVALAEEFTLTTAELSYLQDRKIAYENLANRTGV 246
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP 308
+ V++ AL QS+RYGT + SLRV+ E R R+ EAEKKAA+L PKLTVPMI+FFLP
Sbjct: 247 EGVKSVCLALQQSERYGTPLAQSLRVMAQENRDMRMTEAEKKAAALPPKLTVPMIVFFLP 306
Query: 309 VLILVIIGPAILSIIDTM 326
VL +VI+GP + I M
Sbjct: 307 VLFVVILGPTGIKIAAQM 324
>gi|295690793|ref|YP_003594486.1| type II secretion system F domain-containing protein [Caulobacter
segnis ATCC 21756]
gi|295432696|gb|ADG11868.1| Type II secretion system F domain protein [Caulobacter segnis ATCC
21756]
Length = 327
Score = 244 bits (623), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 133/310 (42%), Positives = 194/310 (62%), Gaps = 2/310 (0%)
Query: 21 AVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSL-QKDSASSRLRTRDSKS 79
AV +F+ I + P + LE R+KSVA RE LR++ +L Q+ A LR +D
Sbjct: 19 AVVVFATIITLASPLMRDNGLEGRLKSVANRREELRRRSREALAQRHGAPGTLRHQDEGL 78
Query: 80 LRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYD 139
+ V++L L +L D +V+KL AGFR + R V P +F + +++G +
Sbjct: 79 YKKVVERLQLSRLLEDPKVVDKLAQAGFRGPRPVTTFYFFRFVAPFVFAAVVAAYLYGVN 138
Query: 140 KLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGIS 199
P Q V + + G+ AP+V+I+N+ QKR+ SI A+PD+LDLLLICVESG+S
Sbjct: 139 DFGLLPIQKLCACVAALAF-GYYAPNVYITNIAQKRRESIVAAFPDSLDLLLICVESGMS 197
Query: 200 IDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALI 259
++ A+++V+ +IG QS+ L+EE+ L AELS+LP R+ A+EN RT V++ A+I
Sbjct: 198 VEAAIQKVSSEIGAQSMELAEELSLLTAELSYLPERRQAYENLARRTNHPGVKSVATAMI 257
Query: 260 QSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAI 319
Q++RYGT +G +LRV+ E R RL AEKKA +L KLTVPMI+FFLPVL +VI+GPAI
Sbjct: 258 QAERYGTPLGAALRVMAKENRELRLSSAEKKATALPAKLTVPMILFFLPVLFIVILGPAI 317
Query: 320 LSIIDTMKDH 329
+ + D H
Sbjct: 318 IKVQDVFAKH 327
>gi|329890992|ref|ZP_08269335.1| bacterial type II secretion system protein F domain protein
[Brevundimonas diminuta ATCC 11568]
gi|328846293|gb|EGF95857.1| bacterial type II secretion system protein F domain protein
[Brevundimonas diminuta ATCC 11568]
Length = 330
Score = 244 bits (622), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 137/316 (43%), Positives = 204/316 (64%), Gaps = 6/316 (1%)
Query: 16 VAITTAVSIFSLIYAVVIPSLGSG-ELEKRMKSVAVEREILRK---QQITSLQKDSASSR 71
++I V++F+ + ++ +G G L+KRMK+VA RE LR+ Q + + ASS
Sbjct: 15 LSIGVGVAVFASVLTLLSSFVGGGARLDKRMKAVAERREELRRRSRQAMRGGAGNEASSL 74
Query: 72 LRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILG 131
RT DS R V +LNL +L D + + + AGFR LN R P I + L
Sbjct: 75 RRTDDSFRSR-VVARLNLMKLLEDPKVADNMIQAGFRGPGPLNTFYFFRFATPFILMALT 133
Query: 132 IIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLL 191
++F K + P +V V++ VGF AP++++ N++ KR++SI A+PD+LDLLL
Sbjct: 134 AFYLFVVVKP-DLPMMTQVAMVVMAAGVGFYAPNIYLKNMIDKRRASIMAAFPDSLDLLL 192
Query: 192 ICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCV 251
ICVESG+SI+ A+++V++++GGQS+ L+EE+ L AELS+LP+R++A+E RTQ +
Sbjct: 193 ICVESGMSIEAAIQKVSQEVGGQSIELAEELSLLSAELSYLPDRRMAYEGMAKRTQHPGI 252
Query: 252 RNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLI 311
+ A+ Q++ YGT +G +LRV+ E R RL AEKKAA+L KLTVPMI+FFLPVL
Sbjct: 253 KAVATAMTQAETYGTPLGSALRVMAKENRELRLSAAEKKAAALPAKLTVPMILFFLPVLF 312
Query: 312 LVIIGPAILSIIDTMK 327
+VI+GPAI++I D MK
Sbjct: 313 VVILGPAIINIQDMMK 328
>gi|39936745|ref|NP_949021.1| type II secretion system protein [Rhodopseudomonas palustris
CGA009]
gi|192292571|ref|YP_001993176.1| type II secretion system protein [Rhodopseudomonas palustris TIE-1]
gi|39650601|emb|CAE29124.1| conserved hypothetical protein [Rhodopseudomonas palustris CGA009]
gi|192286320|gb|ACF02701.1| type II secretion system protein [Rhodopseudomonas palustris TIE-1]
Length = 324
Score = 243 bits (621), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 141/320 (44%), Positives = 198/320 (61%), Gaps = 8/320 (2%)
Query: 1 MPHYFFDLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQI 60
M + + F + A++ + +Y +VIP L KRMK+V ERE LR+++
Sbjct: 1 MLDFLIEKFHDARFMATLLAAIAASATVYTLVIPFFVGETLAKRMKAVGSERERLRQRER 60
Query: 61 TSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVR 120
L K S LR K + V+ NL L E+ +KL AG+R + L R
Sbjct: 61 DRLAKAEKVS-LRQAPKKFVARVVEDFNLAKWLAQESARDKLVMAGYRGQAPYVTFLFFR 119
Query: 121 LVVPIIFLILGIIWIF---GYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQS 177
+V+PI F +++F +D+ P +++G + + G AP +++ N +QKRQ
Sbjct: 120 MVMPIAFGAASALYVFVIANFDQ----PLTIKIGMCVAAIFFGMQAPMLFLKNAIQKRQL 175
Query: 178 SIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQV 237
SIKRA+PDALDLLLIC+ESG+SI+ A RRV+ +IG QS+PL+EE LT AELS+L +R+
Sbjct: 176 SIKRAFPDALDLLLICIESGMSIETAFRRVSIEIGSQSIPLAEEFTLTTAELSYLQDRKQ 235
Query: 238 AFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPK 297
A+EN RT +D V++ AL QS+RYGT +G SLRV+ E R R+ EAEKKAA+L PK
Sbjct: 236 AYENLALRTGLDGVKSVCLALQQSERYGTPLGQSLRVMAQENRDMRMNEAEKKAAALPPK 295
Query: 298 LTVPMIIFFLPVLILVIIGP 317
LTVPMI+FFLPVL +VI+GP
Sbjct: 296 LTVPMIVFFLPVLFVVILGP 315
>gi|90425202|ref|YP_533572.1| type II secretion system protein [Rhodopseudomonas palustris
BisB18]
gi|90107216|gb|ABD89253.1| type II secretion system protein [Rhodopseudomonas palustris
BisB18]
Length = 324
Score = 243 bits (620), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 134/289 (46%), Positives = 188/289 (65%), Gaps = 2/289 (0%)
Query: 29 YAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLN 88
Y ++ P L KRMK+VA ERE +R+++ L K S LR + + V+ N
Sbjct: 29 YTLITPLFAGESLSKRMKAVASERERIRQRERDRLSKTERVS-LRQAPKQFVSKVVEDFN 87
Query: 89 LKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQL 148
L + E +KL AG+R L R+V+PI F++ ++IF + + P +
Sbjct: 88 LGKWVAQEAARDKLVMAGYRGHAPYVTFLFFRMVMPIAFMLATALYIFVISHM-QQPLGI 146
Query: 149 RVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVA 208
++ I ++G AP ++++N + KRQ SIKRA+PDALDLLLICVESG+SI+ A R+VA
Sbjct: 147 KIAICIAACFLGMQAPMLFLTNAISKRQLSIKRAFPDALDLLLICVESGMSIETAFRKVA 206
Query: 209 EDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSI 268
+IG QS+PL+EE LT AELS+L +R+VA+EN RT ++ V++ AL QS+RYGT +
Sbjct: 207 IEIGSQSIPLAEEFTLTTAELSYLQDRKVAYENLAKRTGLEGVKSVCLALQQSERYGTPL 266
Query: 269 GDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGP 317
G SLRV+ E R R+ EAEKKAA+L PKLTVPMI+FFLPVL +VI+GP
Sbjct: 267 GQSLRVMAQENRDMRMNEAEKKAAALPPKLTVPMILFFLPVLFVVILGP 315
>gi|323137430|ref|ZP_08072508.1| Type II secretion system F domain [Methylocystis sp. ATCC 49242]
gi|322397417|gb|EFX99940.1| Type II secretion system F domain [Methylocystis sp. ATCC 49242]
Length = 323
Score = 242 bits (618), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 129/310 (41%), Positives = 198/310 (63%), Gaps = 3/310 (0%)
Query: 16 VAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTR 75
V+I TA+++ + I + +P L + L +RMKSV+ +Q+ +L K + LR
Sbjct: 15 VSILTAIAVIATILTIAMPLLNTDTLSRRMKSVS-SERERIRQRERALAKTQGKA-LRQE 72
Query: 76 DSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWI 135
++N V + +L L ++ KL +AGFR + L RLV PI FL + ++
Sbjct: 73 PKFYMKNVVDRFSLSKWLNTDDAKLKLASAGFRGPQAEVAFLFFRLVTPIAFLFFALFYL 132
Query: 136 FGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVE 195
+ D + L+ VI Y+G AP ++ISN + RQ+S++RA+PDALDL+LICVE
Sbjct: 133 YFLDDS-DMSSLLKTMIVIGATYLGVKAPELFISNTITNRQTSMRRAFPDALDLMLICVE 191
Query: 196 SGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNAT 255
SG+SI+ A R+V +IG QS+PL+EE L AELS+LP+R+ A+ N RT ++ V+ +
Sbjct: 192 SGMSIEHAFRKVGSEIGVQSIPLAEEFALATAELSYLPDRRTAYLNLAARTGLESVKQIS 251
Query: 256 QALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVII 315
LIQ+++YGT +G +LR+ E+R R+MEAEKKAA+L PKLTVPMI+FFLPVL++V++
Sbjct: 252 TVLIQAEKYGTPLGQALRITAQESRDMRMMEAEKKAAALPPKLTVPMIVFFLPVLMVVVL 311
Query: 316 GPAILSIIDT 325
PA + ++ +
Sbjct: 312 SPAAIQVMQS 321
>gi|316933034|ref|YP_004108016.1| Type II secretion system F domain [Rhodopseudomonas palustris DX-1]
gi|315600748|gb|ADU43283.1| Type II secretion system F domain [Rhodopseudomonas palustris DX-1]
Length = 324
Score = 242 bits (618), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 137/286 (47%), Positives = 187/286 (65%), Gaps = 2/286 (0%)
Query: 32 VIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKA 91
V P + L KRMK+V ERE +R+++ L K S LR K + V+ NL
Sbjct: 32 VTPFIVGDTLAKRMKAVGSERERIRQRERDRLAKAEKVS-LRQAPKKFVARVVEDFNLAK 90
Query: 92 ILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVG 151
L E+ +KL AG+R + L RLV+P++F + ++IF L + P +++G
Sbjct: 91 WLAQESARDKLVMAGYRGQAPYITFLFFRLVMPVVFGLASALYIFVITDL-QQPLTVKIG 149
Query: 152 AVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDI 211
I + G AP +++ N +QKRQ SIKRA+PDALDLLLIC+ESG+SI+ A RRV+ +I
Sbjct: 150 ICIAAIFFGMQAPMLFLKNAIQKRQLSIKRAFPDALDLLLICIESGMSIEAAFRRVSIEI 209
Query: 212 GGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDS 271
G QS+PL+EE LT AELS+L +R+ A+EN RT +D V++ AL QS+RYGT +G S
Sbjct: 210 GSQSIPLAEEFTLTTAELSYLQDRKQAYENLAQRTGLDGVKSVCLALQQSERYGTPLGQS 269
Query: 272 LRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGP 317
LRV+ E R R+ EAEKKAA+L PKLTVPMI+FFLPVL +VI+GP
Sbjct: 270 LRVMAQENRDMRMNEAEKKAAALPPKLTVPMIVFFLPVLFVVILGP 315
>gi|92116008|ref|YP_575737.1| type II secretion system protein [Nitrobacter hamburgensis X14]
gi|91798902|gb|ABE61277.1| type II secretion system protein [Nitrobacter hamburgensis X14]
Length = 325
Score = 241 bits (615), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 136/309 (44%), Positives = 195/309 (63%), Gaps = 2/309 (0%)
Query: 18 ITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDS 77
+ A++ + +Y ++ P + L KRMK+VA ERE +R+++ L K S LR
Sbjct: 18 VLAAIAASATVYTLITPFFAAEGLTKRMKAVASERERIRQRERERLAKSEKVS-LRQAPK 76
Query: 78 KSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFG 137
+ + V+ LNL + E KL AG+R + L R+V PI+ LI I+++F
Sbjct: 77 QFVSKVVEDLNLGKWVAQEAAREKLVMAGYRGQAPYVTFLFFRMVTPIVMLIGAIVYVFL 136
Query: 138 YDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESG 197
+ + +++G I + G AP +++ N + KRQ SIKRA+PDALDLLLIC+ESG
Sbjct: 137 LSHM-QQSTPIKIGICIGAAFFGLQAPMLFLKNAITKRQISIKRAFPDALDLLLICIESG 195
Query: 198 ISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQA 257
+SI+ A R+V+ +IG QSV L+EE LT AELS+L +R+VA+EN RT ++ V++ A
Sbjct: 196 MSIEVAFRKVSTEIGSQSVALAEEFTLTTAELSYLQDRKVAYENLAKRTGVEGVKSVCLA 255
Query: 258 LIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGP 317
L QS+RYGT + SLRV+ E R R+ EAEKKAA+L PKLTVPMI+FFLPVL +VI+GP
Sbjct: 256 LQQSERYGTPLAQSLRVMAQENRDMRMTEAEKKAAALPPKLTVPMIVFFLPVLFVVILGP 315
Query: 318 AILSIIDTM 326
+ I M
Sbjct: 316 TGIKIAAQM 324
>gi|114568975|ref|YP_755655.1| type II secretion system protein [Maricaulis maris MCS10]
gi|114339437|gb|ABI64717.1| type II secretion system protein [Maricaulis maris MCS10]
Length = 331
Score = 239 bits (611), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 132/308 (42%), Positives = 191/308 (62%), Gaps = 4/308 (1%)
Query: 16 VAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQ--ITSLQKDSASSRLR 73
+A+ A+ +F+ + + P+LGS +L+KR+KSV RE LR++ + +R
Sbjct: 20 IAMVAAILVFATVVTLTSPALGSDKLDKRIKSVNNRREELRRKNRAAIDAAAMAGKGTIR 79
Query: 74 TRDSKSL-RNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGI 132
++K L R V+ L+L+ D + KL AG R + RL+ P I + +
Sbjct: 80 GAEAKGLVRKVVEALDLQKAFEDPALHEKLAQAGMRGQRPAMTFYFFRLLSPFILFGVAL 139
Query: 133 IWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLI 192
++F + P RV +G +G+ AP++++SNL KRQ SI A+PD LDLLLI
Sbjct: 140 FYVFMINDF-GLPQITRVCFSFGLGLLGYYAPNLYLSNLAAKRQQSIMGAFPDGLDLLLI 198
Query: 193 CVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVR 252
CVESG+SI+ A +V+ ++G QS+ L+EE+ LT AELS+L +R+VA+EN RT V+
Sbjct: 199 CVESGMSIEAAFHKVSSEVGSQSIELAEELSLTTAELSYLQDRRVAYENLAKRTNHPGVK 258
Query: 253 NATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLIL 312
+LIQ++RYGT +G +LRV+ E R RL AEKKAASL KLTVPMIIFFLPVL +
Sbjct: 259 AVCTSLIQAERYGTPLGQALRVMAKENRDMRLAAAEKKAASLPAKLTVPMIIFFLPVLFV 318
Query: 313 VIIGPAIL 320
VI+GPAI+
Sbjct: 319 VILGPAII 326
>gi|150377235|ref|YP_001313830.1| type II secretion system protein [Sinorhizobium medicae WSM419]
gi|150031782|gb|ABR63897.1| type II secretion system protein [Sinorhizobium medicae WSM419]
Length = 321
Score = 237 bits (605), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 137/315 (43%), Positives = 199/315 (63%), Gaps = 3/315 (0%)
Query: 10 DATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSAS 69
DA +LA AI S FS + + P + L +RM+ V ERE +R+++ L++ S +
Sbjct: 9 DAEQLA-AIMAGFSAFSAVVVISWPYVFRDTLSERMRKVEGERERIRRRERARLEQKSKT 67
Query: 70 SRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLI 129
S LR + + V + L D IV KL AG+R ++ L RL+ P++ +
Sbjct: 68 S-LRVEPKRLFQAIVDRFRLAKQADDGEIVRKLSMAGYRGHAAVTAFLAFRLIAPVVIFM 126
Query: 130 LGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDL 189
+++I + E P L V I G +G+ AP++++SN + KRQ SI+R+WP+ALDL
Sbjct: 127 ACLLYILLAVRP-EAPLLLVVAMAIATGALGYFAPAIFVSNRITKRQQSIRRSWPEALDL 185
Query: 190 LLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMD 249
LLI VESG+ I+ A R+V E+IG QS +EE+LLT AELS+L +R+ AFEN RT ++
Sbjct: 186 LLITVESGMGIESAFRKVGEEIGTQSPETAEEILLTTAELSYLQDRRQAFENLGQRTGVE 245
Query: 250 CVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPV 309
VR +LIQ+++YGT +G +LRV+ E R R+ EAEKKAA+L PKLTVPMI+FFLPV
Sbjct: 246 GVRAVVTSLIQAEKYGTPLGQALRVMAQENRDMRMSEAEKKAAALPPKLTVPMILFFLPV 305
Query: 310 LILVIIGPAILSIID 324
L VII PA++ I++
Sbjct: 306 LFAVIITPAVIQIMN 320
>gi|75674494|ref|YP_316915.1| type II secretion system protein [Nitrobacter winogradskyi Nb-255]
gi|74419364|gb|ABA03563.1| type II secretion system protein [Nitrobacter winogradskyi Nb-255]
Length = 325
Score = 237 bits (604), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 139/322 (43%), Positives = 198/322 (61%), Gaps = 8/322 (2%)
Query: 9 FDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSA 68
F + + A++ + +Y ++ P + L KRMK+VA ERE +R ++ L +
Sbjct: 9 FHNPQFMTMVLAAIAASATVYTLITPFFAADGLTKRMKAVASERERIRLRERERLARTEK 68
Query: 69 SSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFL 128
S LR + + V+ LNL + E KL AG+R + L R+V PI+ L
Sbjct: 69 VS-LRQAPKQFISKIVEDLNLGKWVAQEAAREKLVMAGYRGQAPYVTFLFFRMVTPIVML 127
Query: 129 ILGIIWIFGYDKLLEYPFQ---LRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPD 185
I I ++F LL + Q +++G I + G AP +++ N + KRQ SIKRA+PD
Sbjct: 128 IGAIAYVF----LLSHTQQSTTVKLGICIGATFFGMQAPMLFLHNAITKRQLSIKRAFPD 183
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
ALDLLLIC+ESG+SI+ A R+V+ + G QSV L+EE+ LT AELS+L +R+VA+EN NR
Sbjct: 184 ALDLLLICLESGMSIEVAFRKVSTETGNQSVALAEELTLTTAELSYLQDRKVAYENLANR 243
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
T ++ V++ AL QS+RYGT + SLRV+ E R R+ EAEKKAA+L PKLTVPMI+F
Sbjct: 244 TGVEGVKSVCLALQQSERYGTPLAQSLRVMAQENRDMRMTEAEKKAAALPPKLTVPMIVF 303
Query: 306 FLPVLILVIIGPAILSIIDTMK 327
FLPVL +VI+GP + I M
Sbjct: 304 FLPVLFVVILGPTGIKIAAQMH 325
>gi|296444390|ref|ZP_06886355.1| Type II secretion system F domain protein [Methylosinus
trichosporium OB3b]
gi|296258037|gb|EFH05099.1| Type II secretion system F domain protein [Methylosinus
trichosporium OB3b]
Length = 329
Score = 236 bits (603), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 129/325 (39%), Positives = 199/325 (61%), Gaps = 8/325 (2%)
Query: 6 FDLF----DATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVA---VEREILRKQ 58
FD F L ++ AV++ + + ++ + G L KRMKSVA +
Sbjct: 2 FDTFVQYASNGRLMFSLMIAVAVVATVISIGLTFSGGDRLAKRMKSVASERERIRARERA 61
Query: 59 QITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLV 118
+ K+S LR + ++N V + +L L + +L +AG+R + L
Sbjct: 62 AANAKAKESGPKGLRQQPKVYMKNIVDRFSLDTWLNTGDAKMRLASAGYRGPQAEIAFLF 121
Query: 119 VRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSS 178
RLV PI F++ GI + D ++ +++G VI YVG +P ++++N + KRQ S
Sbjct: 122 FRLVTPIAFVLFGIFYFTVVDDS-DWSLLVKIGVVIFAAYVGVKSPELFLTNAITKRQQS 180
Query: 179 IKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVA 238
++ A+PDALDL+LICVESG+SI+ A R+V ++IG +SVPL+EE L AELS+LP+R+ A
Sbjct: 181 MRIAFPDALDLMLICVESGLSIEHAFRKVGKEIGVRSVPLAEEFALATAELSYLPDRRQA 240
Query: 239 FENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKL 298
F N RT +DCV+ LIQ+++YGT +G +LRV E+R R+ EAE++AA+L PKL
Sbjct: 241 FHNLAARTGLDCVKQICTVLIQAEKYGTPLGRALRVTAQESRDMRMAEAERQAAALPPKL 300
Query: 299 TVPMIIFFLPVLILVIIGPAILSII 323
TVPMI+FFLPVL++V++ PAI+ ++
Sbjct: 301 TVPMIVFFLPVLMVVVMAPAIIQVM 325
>gi|254419878|ref|ZP_05033602.1| Bacterial type II secretion system protein F domain [Brevundimonas
sp. BAL3]
gi|196186055|gb|EDX81031.1| Bacterial type II secretion system protein F domain [Brevundimonas
sp. BAL3]
Length = 326
Score = 236 bits (602), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 121/311 (38%), Positives = 200/311 (64%), Gaps = 2/311 (0%)
Query: 16 VAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTR 75
+++ V +F+ + ++ G +L++RMK+V+ R+ L+++ ++ R T
Sbjct: 15 LSLGVGVLVFATVLTLLSSMTGGVKLDQRMKAVSERRDELKRRSRAAIHTGPGGLR-HTD 73
Query: 76 DSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWI 135
D + V +LNL +L D + +++ AG+R L R P IFL++ ++
Sbjct: 74 DEGFKKRVVDRLNLTKLLEDPKVADQMAQAGYRGPRPLTTFYFFRFASPFIFLMVVAFYM 133
Query: 136 FGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVE 195
F K++++P ++ A + GF AP+++++N + KR++SI +A+PDALDLLLICVE
Sbjct: 134 F-VIKVVDWPTMQKITACVAAAVAGFYAPNLFLTNRITKRRTSIMQAFPDALDLLLICVE 192
Query: 196 SGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNAT 255
+G+SI+ A+ +V+++IG S+ L+EE+ L AELS+LP+R++A+EN RT V++
Sbjct: 193 AGMSIEAAIAKVSQEIGTSSIELAEELSLLSAELSYLPDRRMAYENLGKRTNHPGVKSVA 252
Query: 256 QALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVII 315
A+ Q++ YGT + +LRV+ E R RL AEKKAA+L +LTVPMI+FFLPVL +VI+
Sbjct: 253 VAMTQAETYGTPLSSALRVMAKENRDLRLSAAEKKAAALPAQLTVPMILFFLPVLFIVIL 312
Query: 316 GPAILSIIDTM 326
GPAIL+I+DTM
Sbjct: 313 GPAILNIMDTM 323
>gi|91977990|ref|YP_570649.1| type II secretion system protein [Rhodopseudomonas palustris BisB5]
gi|91684446|gb|ABE40748.1| type II secretion system protein [Rhodopseudomonas palustris BisB5]
Length = 324
Score = 234 bits (598), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 133/298 (44%), Positives = 193/298 (64%), Gaps = 2/298 (0%)
Query: 20 TAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKS 79
A++ + +Y +VIP L KRMK+V ERE +R+++ + K S LR +
Sbjct: 20 AAIAASATVYTLVIPLFVGETLAKRMKAVGSERERIRQRERDRIAKAERVS-LRQAPKQF 78
Query: 80 LRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYD 139
+ V+ LNL + E +KL AG+R + L R+V+PI F I +++F
Sbjct: 79 VAKVVEDLNLGKWVAQETARDKLVMAGYRGQAPYVTFLFFRMVMPIAFGIASALYVFLLS 138
Query: 140 KLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGIS 199
+ + +++G I ++G AP +++ N + KRQ SIKRA+PDALDLLLIC+ESG+S
Sbjct: 139 NM-QQSTSIKIGMCIAGVFLGMQAPMLFLKNAISKRQLSIKRAFPDALDLLLICIESGMS 197
Query: 200 IDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALI 259
I+ A R+V+ +IG QS+PL+EE+ LT AELS+LP+R+ A+EN RT ++ V++ AL
Sbjct: 198 IEAAFRKVSIEIGTQSIPLAEELTLTTAELSYLPDRKQAYENLAIRTGLEGVKSVCLALQ 257
Query: 260 QSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGP 317
QS+RYGT + SLRV+ E R R+ EAEKKAA+L PKLTVPMI+FFLPVL +VI+GP
Sbjct: 258 QSERYGTPLSQSLRVMAQENRDMRMNEAEKKAAALPPKLTVPMIVFFLPVLFVVILGP 315
>gi|86748902|ref|YP_485398.1| type II secretion system protein [Rhodopseudomonas palustris HaA2]
gi|86571930|gb|ABD06487.1| type II secretion system protein [Rhodopseudomonas palustris HaA2]
Length = 324
Score = 234 bits (597), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 135/309 (43%), Positives = 195/309 (63%), Gaps = 2/309 (0%)
Query: 9 FDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSA 68
F + A+++ + +Y +V+P L L KRMK+V ERE LR+++ L K
Sbjct: 9 FHDARFMTMLLAAIAVSATVYTLVMPLLVGETLAKRMKAVGSERERLRQRERDRLAKAER 68
Query: 69 SSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFL 128
S LR + + V LNL + E+ +KL AG+R + L R+V+PI F
Sbjct: 69 VS-LRQAPKQFVAKIVDDLNLGKWVAQESARDKLVMAGYRGQAPYITFLFFRMVMPIAFG 127
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
+ +++F + + ++V I ++G AP +++ N + KRQ SI+RA+PDALD
Sbjct: 128 LAAALYVFVLSNM-DQSTPIKVAICIGCVFLGMQAPMLFLKNAITKRQLSIRRAFPDALD 186
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
LLLIC+ESG+SI+ A R+VA +IG QS+PL+EE LT AELS+LP+R+ A+EN RT +
Sbjct: 187 LLLICIESGMSIEAAFRKVAVEIGTQSIPLAEEFTLTTAELSYLPDRKQAYENLAKRTGL 246
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP 308
D V++ AL QS+RYGT + S+RV+ E R R+ EAEKKAA+L PKLTVPMI+FFLP
Sbjct: 247 DGVKSVCLALQQSERYGTPLSQSIRVMAQENRDMRMNEAEKKAAALPPKLTVPMILFFLP 306
Query: 309 VLILVIIGP 317
VL +VI+GP
Sbjct: 307 VLFVVILGP 315
>gi|302381751|ref|YP_003817574.1| type II secretion system F domain protein [Brevundimonas
subvibrioides ATCC 15264]
gi|302192379|gb|ADK99950.1| Type II secretion system F domain protein [Brevundimonas
subvibrioides ATCC 15264]
Length = 333
Score = 234 bits (597), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 125/313 (39%), Positives = 196/313 (62%), Gaps = 5/313 (1%)
Query: 16 VAITTAVSIFSLIYAVVIPSLGSG-ELEKRMKSVAVEREILRKQQITSLQKDSASSRLRT 74
++I + +F+ + ++ S+G G L+KRM++V+V R+ L+++ ++ LR
Sbjct: 11 ISIVVGLLVFATML-TLLSSMGGGVSLDKRMQAVSVRRDELKRRSRQAIANGQGG--LRH 67
Query: 75 RDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIW 134
D + V +LNL +L D + ++ AG R L R P IF+ +++
Sbjct: 68 TDDGFKKRVVDRLNLVKLLEDPKVAEQMIQAGLRGPRPLTTFYFFRFATPFIFMFAAVLY 127
Query: 135 IFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICV 194
+F + +R+G V+ GF P++++ N + KRQ SI +A+PDALDLLLICV
Sbjct: 128 VFVMNDF-GLSVTVRLGIVMFATVAGFYGPNIFLKNRIAKRQLSIMQAFPDALDLLLICV 186
Query: 195 ESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNA 254
E+G+SI+ A+ +V+++IG SV L+EE+ L AELS+LP R++A+E RT VR+
Sbjct: 187 EAGMSIEAAIVKVSQEIGTTSVELAEELALLSAELSYLPERRMAYEGLAKRTNHPGVRSV 246
Query: 255 TQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVI 314
+ A+IQ+++YGT +G +LR + E R RL AEKKAA+L +LTVPMIIFFLPVL +VI
Sbjct: 247 STAMIQAEQYGTPLGSALRTMAKENRDLRLSAAEKKAAALPAQLTVPMIIFFLPVLFVVI 306
Query: 315 IGPAILSIIDTMK 327
+GPAI++I DT+K
Sbjct: 307 LGPAIINIQDTLK 319
>gi|299132291|ref|ZP_07025486.1| Type II secretion system F domain protein [Afipia sp. 1NLS2]
gi|298592428|gb|EFI52628.1| Type II secretion system F domain protein [Afipia sp. 1NLS2]
Length = 325
Score = 232 bits (591), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 129/293 (44%), Positives = 178/293 (60%), Gaps = 2/293 (0%)
Query: 34 PSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAIL 93
P S L +RMK+VA +Q+ +S LR + + V NL L
Sbjct: 34 PLFASDGLTRRMKAVA-NERERIRQRERERMNNSERVTLRQSPKQFIGKIVHDFNLGKWL 92
Query: 94 VDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAV 153
E KL AG+R L R+V PI+ L + ++IF KL + +++G
Sbjct: 93 AQEEAKEKLVMAGYRGHAPYITFLFFRMVTPIVLLAVTALYIFVILKLNQTTL-VKIGIC 151
Query: 154 ILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGG 213
I + G AP +++ N + KRQ SIKRA+PDALDLLLICVESG+SI+ A R+V+ +IG
Sbjct: 152 IGAAWFGMQAPMLFLKNAISKRQLSIKRAFPDALDLLLICVESGMSIEAAFRKVSFEIGS 211
Query: 214 QSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLR 273
QSV L+EE LT AELS+L +R+ A+EN RT +D V++ AL+QS+RYGT +G +LR
Sbjct: 212 QSVALAEEFTLTTAELSYLQDRKTAYENLQKRTGIDGVKSVCMALMQSERYGTPLGQTLR 271
Query: 274 VLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
V+ E R R+ EAEKKAA+L PKLTVPMI+FFLP+L +VI+GP + + M
Sbjct: 272 VMAQENRDMRMTEAEKKAAALPPKLTVPMIVFFLPILFVVILGPTGIKVAAYM 324
>gi|218461576|ref|ZP_03501667.1| putative component of pilus protein [Rhizobium etli Kim 5]
Length = 165
Score = 229 bits (583), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 109/162 (67%), Positives = 135/162 (83%)
Query: 163 APSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEM 222
AP+++ISN + KRQ SIKRAWPDALDL+LICVESGISI+ A+RRV+E++G QS L+EEM
Sbjct: 2 APNIYISNRMGKRQHSIKRAWPDALDLMLICVESGISIEAAMRRVSEELGEQSPALAEEM 61
Query: 223 LLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSE 282
+LT AELSFLP+R+VA EN RTQ++ VR+ TQALIQ+DRYGT + +LRVL E R E
Sbjct: 62 VLTTAELSFLPDRRVALENLATRTQIELVRSVTQALIQADRYGTPVAQALRVLAQEGRDE 121
Query: 283 RLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIID 324
R+ EAEKKAA+L PKLTVPMI+FFLPVLI VI+GPA + + D
Sbjct: 122 RMNEAEKKAAALPPKLTVPMILFFLPVLIAVILGPAGIQVAD 163
>gi|227818621|ref|YP_002822592.1| TadC, component of type IV pilus [Sinorhizobium fredii NGR234]
gi|36958877|gb|AAQ87302.1| Tyrosine phenol-lyase [Sinorhizobium fredii NGR234]
gi|227337620|gb|ACP21839.1| TadC, component of type IV pilus [Sinorhizobium fredii NGR234]
Length = 323
Score = 228 bits (582), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 127/306 (41%), Positives = 191/306 (62%), Gaps = 1/306 (0%)
Query: 17 AITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRD 76
A+ T ++ FS + AV P + L +RM+ V ERE +R+++ T L + + LR
Sbjct: 15 AMLTGIAAFSAVVAVSWPYVFRNTLAERMRKVESERERIRQRERTRLNAEKSKVALRAEP 74
Query: 77 SKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIF 136
+ + V + NL + +I+ +L AG+R + L RL+ PI+ +++I
Sbjct: 75 RRFFQAIVDRFNLAKQAENSDILRQLSMAGYRGYAPVTTFLAFRLIAPIVLFAACLLYIL 134
Query: 137 GYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVES 196
+ + P + +G +G+ AP+++I N + KRQ +I+RAWP+ALDLLLI VES
Sbjct: 135 LVLRP-QAPLLAVIAMAGAMGSLGYFAPAIFIRNRITKRQQAIRRAWPEALDLLLITVES 193
Query: 197 GISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQ 256
G+ I+ A R+V E+IG QS ++EE+LLT AELS+L +R+ AFEN RT ++ VR
Sbjct: 194 GMGIESAFRKVGEEIGAQSPEVAEEILLTTAELSYLQDRRQAFENLGQRTGVEGVRAVVT 253
Query: 257 ALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIG 316
+LIQ+++YGT +G +LRV+ E R R+ EAEKKAA+L PKLTVPMI+FFLPVL VI+
Sbjct: 254 SLIQAEKYGTPLGQALRVMAQENRDMRMSEAEKKAAALPPKLTVPMIVFFLPVLFAVIVT 313
Query: 317 PAILSI 322
PA + I
Sbjct: 314 PAAIQI 319
>gi|170750194|ref|YP_001756454.1| type II secretion system protein [Methylobacterium radiotolerans
JCM 2831]
gi|170656716|gb|ACB25771.1| type II secretion system protein [Methylobacterium radiotolerans
JCM 2831]
Length = 325
Score = 228 bits (581), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 130/292 (44%), Positives = 195/292 (66%), Gaps = 1/292 (0%)
Query: 34 PSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAIL 93
P L + L KRMK V+ ERE +R+++ S ++ + LRT +++ V++ L+ L
Sbjct: 34 PFLETDRLGKRMKLVSDEREQIRRRERLSAERTGNRATLRTEPKAYMKSIVERYQLRRWL 93
Query: 94 VDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAV 153
+ KL AG+R + + L RLVVP++ +I + ++F + +L+ + +R G V
Sbjct: 94 GTDTAKRKLMQAGYRGQGAETAFLFFRLVVPVVAVIAALFYLFVLE-VLDASYLMRFGLV 152
Query: 154 ILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGG 213
I Y+G AP +++ N +KRQ+ I++AWPDALDL LICVESG++I+ A R+V+ +I
Sbjct: 153 IGAAYMGIKAPELFLVNTAKKRQTEIRKAWPDALDLTLICVESGMAIENAFRKVSTEIAT 212
Query: 214 QSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLR 273
SV L+EE+ L AE+SFLP+R+ A+EN RT ++ V++ ALIQ++RYGT +G +LR
Sbjct: 213 SSVVLAEELALMTAEMSFLPDRRQAYENLVMRTGLEPVKSVATALIQAERYGTPVGQALR 272
Query: 274 VLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDT 325
VL E+R R+ EAEKKAA L PKLTVPMI+FFLPVL +VII PA++ I+ T
Sbjct: 273 VLSQESRDMRMNEAEKKAAGLPPKLTVPMILFFLPVLFVVIITPAVIQIMRT 324
>gi|307318085|ref|ZP_07597521.1| Type II secretion system F domain protein [Sinorhizobium meliloti
AK83]
gi|306896126|gb|EFN26876.1| Type II secretion system F domain protein [Sinorhizobium meliloti
AK83]
Length = 321
Score = 227 bits (579), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 133/316 (42%), Positives = 193/316 (61%), Gaps = 3/316 (0%)
Query: 10 DATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSAS 69
D +LA AI S FS + V P + L RM+ V ERE +R+++ L++ S
Sbjct: 9 DPEQLA-AIMAGFSAFSAVVVVSWPYVFRDTLSDRMRRVEGERERIRQRERARLEEKSRV 67
Query: 70 SRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLI 129
S LR + + V + L D IV KL AG+R ++ L RL+ P+
Sbjct: 68 S-LRVEPKRLFQAIVDRFRLAKQAEDGEIVRKLSMAGYRGHAAVTAFLAFRLIAPVAIFA 126
Query: 130 LGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDL 189
+++I + E P L V +G +G+ +P++++ N + KRQ SI+R+WP+ALDL
Sbjct: 127 ACLLYILLVVRP-EAPLLLVVAMAGAMGALGYFSPAIFVRNRITKRQQSIRRSWPEALDL 185
Query: 190 LLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMD 249
LLI VE+G+ I+ A R+V E+IG QS +EE+LLT AELS+L +R+ AFEN RT ++
Sbjct: 186 LLITVEAGMGIESAFRKVGEEIGTQSPETAEEILLTTAELSYLQDRRQAFENLGQRTGVE 245
Query: 250 CVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPV 309
VR +LIQ+++YGT +G +LRV+ E R R+ EAEK+AA+L PKLTVPMI+FFLPV
Sbjct: 246 GVRAVVTSLIQAEKYGTPLGQALRVMAQENRDMRMSEAEKRAAALPPKLTVPMILFFLPV 305
Query: 310 LILVIIGPAILSIIDT 325
L VII PA++ I+ T
Sbjct: 306 LFAVIITPAVIQIMST 321
>gi|16127170|ref|NP_421734.1| hypothetical protein CC_2940 [Caulobacter crescentus CB15]
gi|221235971|ref|YP_002518408.1| tyrosine phenol-lyase [Caulobacter crescentus NA1000]
gi|13424566|gb|AAK24902.1| hypothetical protein CC_2940 [Caulobacter crescentus CB15]
gi|220965144|gb|ACL96500.1| tyrosine phenol-lyase [Caulobacter crescentus NA1000]
Length = 362
Score = 226 bits (577), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 128/310 (41%), Positives = 192/310 (61%), Gaps = 4/310 (1%)
Query: 21 AVSIFSLIYAVVIPSLGSGELEKRMKSVA---VEREILRKQQITSLQKDSASSRLRTRDS 77
AV +F+ I + P + LE R+KSVA E +Q I++ +A LR +D
Sbjct: 54 AVVVFATIITLASPVMRDNNLEGRLKSVANRREELRRRSRQSISTRAPGTAGGTLRHQDE 113
Query: 78 KSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFG 137
+N V++L L +L D +V KL AGFR ++ R +P F +++
Sbjct: 114 GLYKNVVERLQLSRLLEDPKVVEKLAQAGFRGPKPVSTFYFFRFAMPFAFAAGAAFYLYV 173
Query: 138 YDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESG 197
+ P Q ++ A + +G+ AP+V+ISN+ QKR+ SI A+PDALDLLLICVESG
Sbjct: 174 VNDFGLLPMQ-KLCACVAFLALGYYAPNVYISNVAQKRRESIVAAFPDALDLLLICVESG 232
Query: 198 ISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQA 257
+SI+ A+++V ++G S+ L+EE+ L AELS+LP+R++A+EN RT +++ A
Sbjct: 233 MSIEAAIQKVGAEVGSSSMELAEELSLLTAELSYLPDRRLAYENLARRTNHPGIKSVATA 292
Query: 258 LIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGP 317
+IQ++RYGT +G +LRV+ E R RL AEKKAA+L +LTVPMI+FFLPVL ++I+GP
Sbjct: 293 MIQAERYGTPLGTALRVMAKENRELRLSAAEKKAAALPAQLTVPMILFFLPVLFIMILGP 352
Query: 318 AILSIIDTMK 327
AI+ + D K
Sbjct: 353 AIMKVQDAFK 362
>gi|304320652|ref|YP_003854295.1| hypothetical protein PB2503_05397 [Parvularcula bermudensis
HTCC2503]
gi|303299554|gb|ADM09153.1| hypothetical protein PB2503_05397 [Parvularcula bermudensis
HTCC2503]
Length = 338
Score = 226 bits (576), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 126/318 (39%), Positives = 193/318 (60%), Gaps = 8/318 (2%)
Query: 16 VAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTR 75
+A+ AV +F I +V+P L+KR+K VA +E LR+Q L LR
Sbjct: 15 IAMLAAVGVFLTIVTLVMPLFADNGLDKRVKKVADYKERLRQQSRAELAGSRKPGSLRNA 74
Query: 76 DSKSL-RNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIW 134
+ + + V++L L I +L AG R E + ++ R++ P+ L++ I +
Sbjct: 75 TAGGMGKRLVEQLKLFEIFDAAAARKQLMMAGLRGERPVFTYMLARVITPVAALLVAIFY 134
Query: 135 IFGYDKLLEYPFQ---LRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLL 191
++ + + F L +GA+ L G+ P++++ NLV KR+ I+ ++PD+LDLLL
Sbjct: 135 LYVLEVVEVASFMRLILCIGALAL----GYYLPNIYVHNLVTKRKQKIQLSFPDSLDLLL 190
Query: 192 ICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCV 251
ICVESG+SI+ AL++V E++ L+EE LT AELS+L +R+VA+ N RT ++ V
Sbjct: 191 ICVESGMSIEAALQKVTEEVAASCPELAEEYGLTTAELSYLQDRKVAYHNLGERTGLEGV 250
Query: 252 RNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLI 311
++ T ALIQS+ YGT++G SLRV+ +E R R+ AEKKAA+L PKLTVPMI+FFLPVL
Sbjct: 251 KSVTTALIQSEVYGTALGASLRVMAAENREIRMQNAEKKAAALPPKLTVPMILFFLPVLF 310
Query: 312 LVIIGPAILSIIDTMKDH 329
+VI+GP +L T +
Sbjct: 311 VVILGPGVLKATSTATEE 328
>gi|254293219|ref|YP_003059242.1| type II secretion system protein [Hirschia baltica ATCC 49814]
gi|254041750|gb|ACT58545.1| type II secretion system protein [Hirschia baltica ATCC 49814]
Length = 333
Score = 225 bits (573), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 122/298 (40%), Positives = 191/298 (64%), Gaps = 5/298 (1%)
Query: 25 FSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFV 84
F+ I + P+L +LE R+KSV+ RE LR++ L+ S LR +D +RN V
Sbjct: 21 FATILTIAAPALKGNKLETRLKSVSNRREELRRKSREQLKDKS----LRRKDEGMMRNVV 76
Query: 85 KKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEY 144
KL+L+++L D+N+ L AG R ++ R +P + +L +++ + +
Sbjct: 77 DKLDLQSLLRDDNLEKALVQAGLRGPRPVSAFYFARFALPFLLGLLTFLYLH-FVNDFDL 135
Query: 145 PFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQAL 204
FQL++ AV+ GF AP+++++N KR++SI +A+PD+LD++LICVESG+SI+ A
Sbjct: 136 NFQLQMCAVMFGAAAGFYAPNMYLTNRADKRKASIMKAFPDSLDMMLICVESGMSIESAF 195
Query: 205 RRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRY 264
+V E++G SV L+EE+ LT AELS+L R+ A+ N +RT +++ AL+Q+++Y
Sbjct: 196 AKVGEEVGTASVELAEELGLTTAELSYLQERRQAYVNLADRTNHPGIKSVATALVQAEKY 255
Query: 265 GTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
GT +G +LR + E R R++EAEKKAA+L KLTVPMI+FFLPVL +VI PA + I
Sbjct: 256 GTPMGTALRTMAKENREIRVLEAEKKAAALPAKLTVPMIVFFLPVLFIVIGTPAYIQI 313
>gi|220922784|ref|YP_002498086.1| type II secretion system protein [Methylobacterium nodulans ORS
2060]
gi|219947391|gb|ACL57783.1| type II secretion system protein [Methylobacterium nodulans ORS
2060]
Length = 319
Score = 220 bits (560), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 124/294 (42%), Positives = 193/294 (65%), Gaps = 4/294 (1%)
Query: 29 YAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLN 88
+ ++ P L L +RMKSV ER+ +R ++ L + LR + ++ V++
Sbjct: 28 FTLLQPFLEPDRLARRMKSVGEERDRIRLRERERLNQ---RGNLRQQPKAYMKRVVERFK 84
Query: 89 LKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQL 148
L L ++ N+L AG+R + L RLV+P++F ++ + ++F L+ PF +
Sbjct: 85 LDNWLATDDAKNRLMMAGYRGPQAETAFLFFRLVMPVVFFVVSVFYLFVLHA-LDQPFSI 143
Query: 149 RVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVA 208
R+ VI Y G AP +++ N KRQ+ IK+ WPDALDL+LICVESG++I+ + RRV+
Sbjct: 144 RLMIVIAAVYAGIKAPEIFLKNQTTKRQAEIKKHWPDALDLMLICVESGMAIEHSFRRVS 203
Query: 209 EDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSI 268
++ QS+ L+EE+ LT AELS+L +R++A+EN RT ++ V+ + AL+Q++RYGT +
Sbjct: 204 AEMANQSIVLAEELALTTAELSYLTDRRIAYENLAMRTGLESVKAVSTALVQAERYGTPV 263
Query: 269 GDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
G +LRVL E+R +R+ EAEKKAA+L PKLTVPMI+FFLPVL +VI+ PA++ I
Sbjct: 264 GQALRVLAQESRDQRMNEAEKKAAALPPKLTVPMILFFLPVLFVVILTPAMVQI 317
>gi|193782687|ref|NP_436096.2| Pilus assembly protein [Sinorhizobium meliloti 1021]
gi|307304378|ref|ZP_07584129.1| Type II secretion system F domain protein [Sinorhizobium meliloti
BL225C]
gi|193073143|gb|AAK65508.2| Pilus assembly protein [Sinorhizobium meliloti 1021]
gi|306902580|gb|EFN33174.1| Type II secretion system F domain protein [Sinorhizobium meliloti
BL225C]
Length = 321
Score = 219 bits (558), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 133/316 (42%), Positives = 193/316 (61%), Gaps = 3/316 (0%)
Query: 10 DATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSAS 69
D +LA AI S FS + V P + L RM+ V ERE +R+++ L++ S
Sbjct: 9 DPEQLA-AIMAGFSAFSAVVVVSWPYVFRDTLSDRMRRVEGERERIRQRERARLEEKSRV 67
Query: 70 SRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLI 129
S LR + + V + L D IV KL AG+R ++ L RL+ P+
Sbjct: 68 S-LRVEPKRLFQAIVDRFRLAKQAEDGEIVRKLSMAGYRGHAAVTAFLAFRLIAPVAIFA 126
Query: 130 LGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDL 189
+++I + E P L V +G +G+ +P++++ N + KRQ SI+R+WP+ALDL
Sbjct: 127 ACLLYILLVVRP-EAPLLLVVAMAAAMGALGYFSPAIFVRNRITKRQQSIRRSWPEALDL 185
Query: 190 LLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMD 249
LLI VE+G+ I+ A R+V E+IG QS +EE+LLT AELS+L +R+ AFEN RT ++
Sbjct: 186 LLITVEAGMGIESAFRKVGEEIGTQSPETAEEILLTTAELSYLQDRRQAFENLGQRTGVE 245
Query: 250 CVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPV 309
VR +LIQ+++YGT +G +LRV+ E R R+ EAEK+AA+L PKLTVPMI+FFLPV
Sbjct: 246 GVRAVVTSLIQAEKYGTPLGQALRVMAQENRDMRMSEAEKRAAALPPKLTVPMILFFLPV 305
Query: 310 LILVIIGPAILSIIDT 325
L VII PA++ I+ T
Sbjct: 306 LFAVIITPAVIQIMST 321
>gi|149186259|ref|ZP_01864573.1| hypothetical protein ED21_31019 [Erythrobacter sp. SD-21]
gi|148830290|gb|EDL48727.1| hypothetical protein ED21_31019 [Erythrobacter sp. SD-21]
Length = 329
Score = 197 bits (502), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 114/311 (36%), Positives = 188/311 (60%), Gaps = 7/311 (2%)
Query: 17 AITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRD 76
+I ++ F++I+A+ + KR+K++ RE L+ +T+ K S +T
Sbjct: 19 SILAGIAAFAVIFAIYTAVTIKDPMAKRVKALEGRREELKLGLVTAGAKKRQSLVRKTNT 78
Query: 77 SKSLRNFVKKLNLKAILVDENIV---NKLRAAGFRSEYSLNILLVVRLVVPIIFLILGII 133
+ +R + N+K +L D + KL AGFR++ IL+ +R+V+PI+F + I
Sbjct: 79 TDKVRETLG--NMK-VLQDSQVQMMQQKLAWAGFRNKEVAVILIGLRMVLPIVFGSIAAI 135
Query: 134 WIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLIC 193
++G + ++ F+ RV A+ + G+ P +++SN+ KR +I++ PDALDLL+IC
Sbjct: 136 LLYGIEIYPDWQFK-RVAALAFAVFAGYKGPEIYLSNIASKRTDAIRKGLPDALDLLVIC 194
Query: 194 VESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRN 253
E+G+++D A RVA+++G L +E LT ELSFL R+ AF+N R ++ V+
Sbjct: 195 AEAGLTVDAAFNRVAKELGRAYPELGDEFALTAIELSFLNERKKAFDNLAYRVNLEAVKG 254
Query: 254 ATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILV 313
++Q++RYGT + +LRVL +E R+ER+M AE+KAA L +TVP+I+F LPVL +V
Sbjct: 255 VVTTMVQTERYGTPLASALRVLSAEFRNERMMRAEEKAARLPAIMTVPLIMFILPVLFIV 314
Query: 314 IIGPAILSIID 324
I+GPA SI D
Sbjct: 315 ILGPAACSIAD 325
>gi|85707698|ref|ZP_01038764.1| hypothetical protein NAP1_00645 [Erythrobacter sp. NAP1]
gi|85689232|gb|EAQ29235.1| hypothetical protein NAP1_00645 [Erythrobacter sp. NAP1]
Length = 333
Score = 194 bits (494), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 111/310 (35%), Positives = 184/310 (59%), Gaps = 8/310 (2%)
Query: 21 AVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSL 80
++ F++I A+ + KR+KS+ R+ L+ +TS K AS ++ + +
Sbjct: 24 GLAAFAVIMAIYAAITIKDPMAKRVKSLNERRDELKAGIVTSGTKKRASLVRKSDTTDKV 83
Query: 81 RNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYD- 139
++ + K+N+ + + KL AG+R++ I++ +R V+P++F I+G I+ ++
Sbjct: 84 KDSLGKMNVLEQSQLQAVQQKLAHAGYRNKELAVIVIGLRAVLPVVFGIVGFFAIYYFNV 143
Query: 140 ---KLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVES 196
K Y F L + + +GY G P +++ N KR I++ PDALDLL+IC E+
Sbjct: 144 FDIKSDFYKF-LAMAGCLFLGYKG---PELFLKNKADKRTKEIQKGLPDALDLLVICAEA 199
Query: 197 GISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQ 256
G+++D A RVA+++G L +E LT ELSFL R++AF N R ++ V+
Sbjct: 200 GLTVDAAFNRVAKELGRAYPELGDEFALTAIELSFLNERKMAFNNLAYRVDLEAVKGVVT 259
Query: 257 ALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIG 316
+IQ++RYGT + +LRVL +E R+ER+M AE+KAA L +TVP+I+F LPVL +VI+G
Sbjct: 260 TMIQTERYGTPLASALRVLSAEFRNERMMRAEEKAARLPAIMTVPLILFILPVLFIVILG 319
Query: 317 PAILSIIDTM 326
PA +I DT+
Sbjct: 320 PAACAITDTL 329
>gi|87199097|ref|YP_496354.1| type II secretion system protein [Novosphingobium aromaticivorans
DSM 12444]
gi|87134778|gb|ABD25520.1| type II secretion system protein [Novosphingobium aromaticivorans
DSM 12444]
Length = 335
Score = 193 bits (490), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 124/327 (37%), Positives = 190/327 (58%), Gaps = 16/327 (4%)
Query: 6 FDLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQK 65
FD++ + VAI A ++ IYA V + KR+K++ RE L+ +T+ +
Sbjct: 13 FDVYFVGSILVAIA-AFAVMLAIYAAVTVR---DPMAKRVKALNERREQLKSGIVTANAR 68
Query: 66 DSASSRLRTRDSKSLRNFVKKLNLKAILVDEN---IVNKLRAAGFRS-EYSLNILLVVRL 121
S R + + +R F++ L +L D I KL AG R E+++ ++L RL
Sbjct: 69 KRTSIVRRNQTTDQIRGFLESLK---VLQDSQLAVIQQKLAQAGIRKKEWAVAVILG-RL 124
Query: 122 VVPIIFLILGIIWIFGYDKLLEY-PFQLRVG-AVILIGYVGFCAPSVWISNLVQKRQSSI 179
V PI + G + + ++ PF+ +G AV LI G+ P ++I NLV KR ++
Sbjct: 125 VGPIALGLFGAAVFYWSNTFPDWSPFKRFLGFAVCLIA--GYKGPDLFIQNLVSKRTVAV 182
Query: 180 KRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAF 239
++ PDALDLL+IC E+G+++D A RVA ++G L +E LT ELSFL R+ AF
Sbjct: 183 RKGLPDALDLLVICAEAGLTVDAAFSRVARELGRAYPELGDEFALTAIELSFLTERRHAF 242
Query: 240 ENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLT 299
EN R +D V+ +IQ++RYGT + +LRVL +E R+ER+M AE+KAA L +T
Sbjct: 243 ENLAYRVDLDSVKGVVTTMIQTERYGTPLASALRVLSAEFRNERMMRAEEKAARLPAIMT 302
Query: 300 VPMIIFFLPVLILVIIGPAILSIIDTM 326
+P+I+F LPVL +VI+GPA SI D++
Sbjct: 303 IPLILFILPVLFIVILGPAACSISDSL 329
>gi|326388860|ref|ZP_08210442.1| type II secretion system protein [Novosphingobium nitrogenifigens
DSM 19370]
gi|326206460|gb|EGD57295.1| type II secretion system protein [Novosphingobium nitrogenifigens
DSM 19370]
Length = 339
Score = 192 bits (487), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 110/308 (35%), Positives = 177/308 (57%), Gaps = 9/308 (2%)
Query: 21 AVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSL 80
AV++ IYA V + KR+KS+ RE L+ + + K S R + +
Sbjct: 32 AVAVVLAIYAAVTVR---DPMAKRVKSLNERREELKAGIVVAASKKRTSIVRRNETTDRI 88
Query: 81 RNFVKKLNLKAILVDENIVN---KLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFG 137
R+ +++L +L D + KL AG R + ++ R++ P++ L ++I+G
Sbjct: 89 RSILERLR---VLQDSQLATAQQKLAQAGIRKKEWGVAVIFGRMIGPMVLGGLAALFIYG 145
Query: 138 YDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESG 197
+ +P + GA ++ G+ P V+++NL+ KR ++I++ PDALDLL+IC E+G
Sbjct: 146 LNYFPTWPDYKKFGAFAVMVLAGYKGPDVFVANLIGKRTNAIRKGLPDALDLLVICAEAG 205
Query: 198 ISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQA 257
++ID A RVA ++G L +E LT ELSFL R+ AFEN R ++ +R
Sbjct: 206 LTIDAAFSRVARELGRAYPELGDEFSLTAIELSFLTERRSAFENLAYRVNLESMRGVVTT 265
Query: 258 LIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGP 317
+IQ++RYGT + +LRVL +E R+ER+M AE+KAA L +T+P+I+F LP L +VI+GP
Sbjct: 266 MIQTERYGTPLASALRVLSAEFRNERMMRAEEKAARLPAIMTIPLILFILPTLFVVILGP 325
Query: 318 AILSIIDT 325
A S+ D
Sbjct: 326 AACSLSDN 333
>gi|103486613|ref|YP_616174.1| type II secretion system protein [Sphingopyxis alaskensis RB2256]
gi|98976690|gb|ABF52841.1| type II secretion system protein [Sphingopyxis alaskensis RB2256]
Length = 347
Score = 191 bits (486), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 112/313 (35%), Positives = 181/313 (57%), Gaps = 2/313 (0%)
Query: 15 AVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRT 74
A + A+ +F+++ A+ + KR+K++ RE L+ S K A +
Sbjct: 28 AGTLLAAIGVFAVLVAIYNALTVRNPMTKRVKALNERREQLKAGITASTAKRRARLVRKN 87
Query: 75 RDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIW 134
+ + +RNF+ +L + + + KL AG RS+ ++ R+V+PI+F L +
Sbjct: 88 QTADRMRNFLGRLQVLQEGQIKEVQQKLAQAGIRSKDLAVAVIFGRMVLPILFGGLALFL 147
Query: 135 IFGYDKLLEY-PFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLIC 193
I+ D PF+ R G + +G+ AP +++ N+ QKR +I++ PDALDLL+IC
Sbjct: 148 IYIVDMWPTLTPFK-RSGFTMAALILGYKAPDLFVDNMRQKRTDAIRKGLPDALDLLVIC 206
Query: 194 VESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRN 253
E+G+++D A RV++++G L EE LT EL FL R+ AFEN R ++ V+
Sbjct: 207 AEAGLTVDSAFSRVSKELGRAYPELGEEFALTSIELGFLTERRQAFENLAYRVNLESVKG 266
Query: 254 ATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILV 313
+IQ+++YGT + +LRVL +E R+ER+M AE+KAA L +TVP+I+F LPVL +V
Sbjct: 267 VVTTMIQTEKYGTPLASALRVLSAEFRNERMMRAEEKAARLPAIMTVPLILFILPVLFIV 326
Query: 314 IIGPAILSIIDTM 326
I+GPA S+ D M
Sbjct: 327 ILGPAACSLSDAM 339
>gi|83312845|ref|YP_423109.1| Flp pilus assembly protein TadC [Magnetospirillum magneticum AMB-1]
gi|82947686|dbj|BAE52550.1| Flp pilus assembly protein TadC [Magnetospirillum magneticum AMB-1]
Length = 339
Score = 188 bits (478), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 121/301 (40%), Positives = 189/301 (62%), Gaps = 12/301 (3%)
Query: 34 PSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKS----LRNFVKKLNL 89
P L R+K+V+ R L ++Q L + A+SR R + +R + +L L
Sbjct: 44 PLLARDRRASRIKAVSNRRRELSERQKAELDQARATSRRRGARPQRRVALMRAVIDRLKL 103
Query: 90 KAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFG-YDKLLEYPFQL 148
+ +L + + +L AG+RS+ + + R+ +P+I L LG+I+ +D E P +
Sbjct: 104 QDLLEAKALRAQLACAGWRSQAAPLTFIFARVALPVILLALGLIYATTLFD---EQPLMI 160
Query: 149 RVGAVILIGYVGFCA--PSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRR 206
R A+IL +G A P++W++N VQKRQ ++ RA+PDALDL++ICV++G+S++ AL R
Sbjct: 161 R--ALILAAAMGIGALLPNIWLTNAVQKRQMALSRAFPDALDLIVICVDAGLSVETALGR 218
Query: 207 VAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGT 266
V E++ + ++EE+ LT AEL+FL +R+ A+ENF RT + V++ ALIQS++YGT
Sbjct: 219 VTEEMMISAPEMAEEIGLTAAELAFLADRRHAWENFAERTGLPQVKSLATALIQSEKYGT 278
Query: 267 SIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
+ +L+V+ E R R+ AEKKAA+L KLTVPMI+FFLPVL L+I GPA + + M
Sbjct: 279 PVAQALKVISQENREGRMAAAEKKAAALPAKLTVPMIVFFLPVLFLIIAGPAAIQVSGMM 338
Query: 327 K 327
K
Sbjct: 339 K 339
>gi|296284556|ref|ZP_06862554.1| hypothetical protein CbatJ_13056 [Citromicrobium bathyomarinum
JL354]
Length = 342
Score = 188 bits (478), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 108/307 (35%), Positives = 180/307 (58%), Gaps = 5/307 (1%)
Query: 20 TAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKS 79
A+++ IYA V + KR+K++ R+ L+ + + S RT+ +
Sbjct: 37 AAMAVMLAIYAAVTVR---DPMAKRIKALNERRDELKAGIVRETARKRKSLVRRTQKTDK 93
Query: 80 LRNFVKKLNLKAILVDENIVNKLRAAGFRS-EYSLNILLVVRLVVPIIFLILGIIWIFGY 138
+++ + + E + KL AG R+ EY++ ++ R V+PI+ ++ +
Sbjct: 94 VKDTLANFKVLQQSQLEVVQQKLAHAGIRNKEYAVYVI-GARAVLPIVLGLIAFYLFYVS 152
Query: 139 DKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGI 198
D ++ R+GA+ + ++G+ P ++I+N +KR +I++ PDALDLL+IC E+G+
Sbjct: 153 DMFADWGSFKRLGALSIAVFIGYKGPELYIANKAKKRTDAIRKGLPDALDLLVICAEAGL 212
Query: 199 SIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQAL 258
+ID A RVA+++G L +E LLT ELSFL NR++AF+N R ++ V+ +
Sbjct: 213 TIDSAFTRVAKELGRAYPELGDEFLLTSIELSFLNNRKMAFDNLAYRVDLEAVQGVVTTM 272
Query: 259 IQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPA 318
IQ++RYGT + +LRVL +E R+ER+M AE+KAA L +TVP+I+F LP L +VI+GPA
Sbjct: 273 IQTERYGTPLASALRVLSAEFRNERMMRAEEKAARLPAIMTVPLILFILPTLFIVILGPA 332
Query: 319 ILSIIDT 325
SI D
Sbjct: 333 GCSIADA 339
>gi|94497258|ref|ZP_01303830.1| type II secretion system protein [Sphingomonas sp. SKA58]
gi|94423363|gb|EAT08392.1| type II secretion system protein [Sphingomonas sp. SKA58]
Length = 329
Score = 186 bits (473), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 106/285 (37%), Positives = 168/285 (58%), Gaps = 6/285 (2%)
Query: 41 LEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVN 100
+ KR+K++ RE L+ S K A + + +R+F+ L +L D+ + +
Sbjct: 44 MAKRVKALNERREQLKAGITASTAKRRAKLVKSNQTTDQMRSFLSSLK---VLQDDQLKD 100
Query: 101 ---KLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIG 157
+L AG RS+ ++ R+++PI + I ++G L E+ R A +
Sbjct: 101 VQVRLAQAGIRSKDLAVAVIFGRMILPIAIGGMAAILLYGVGILPEWGPMKRFFAFAVAL 160
Query: 158 YVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVP 217
+ + AP ++I N VQKR ++I++ PDALDLL+IC E+G+++D A RVA ++G
Sbjct: 161 LLSYKAPDLFIDNKVQKRSAAIRKGLPDALDLLVICAEAGLTVDAAFARVARELGKAYPE 220
Query: 218 LSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVS 277
L +E LT ELSFL R++AFEN +R ++D V+ +IQ+++YGT + +LRVL +
Sbjct: 221 LGDEFHLTAIELSFLTERRMAFENLASRVKLDAVKGVVTTMIQTEKYGTPLASALRVLSA 280
Query: 278 ETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
E R ER+M AE+KAA L +TVP+I+F LP L +VI+GPA SI
Sbjct: 281 EFRHERMMRAEEKAARLPAIMTVPLILFILPTLFVVILGPAACSI 325
>gi|85373127|ref|YP_457189.1| hypothetical protein ELI_01500 [Erythrobacter litoralis HTCC2594]
gi|84786210|gb|ABC62392.1| hypothetical protein ELI_01500 [Erythrobacter litoralis HTCC2594]
Length = 331
Score = 186 bits (472), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 106/306 (34%), Positives = 177/306 (57%), Gaps = 3/306 (0%)
Query: 20 TAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKS 79
A+++ IYA V + KR+K++ R+ L+ + S K S +T ++
Sbjct: 26 AALAVMMAIYAAVTIK---DPMAKRVKALNERRDELKAGIVKSSGKKRQSLVRKTDQTEK 82
Query: 80 LRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYD 139
+++ ++ + + E I KL AG R++ +++ RLV+PI+ + + ++G D
Sbjct: 83 VKDTLQNMKVLQQSQIEVIQQKLAHAGIRNKELAVVVIGARLVLPIVLGGIVALVVYGLD 142
Query: 140 KLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGIS 199
E+ R A+++ +G+ P + + N KR +I++ PDALDLL+IC E+G++
Sbjct: 143 FFPEWGAMKRYAALVVAMGLGYKGPEMLLKNKAAKRTDAIRKGLPDALDLLVICAEAGLT 202
Query: 200 IDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALI 259
+D A RVA+++G L +E LT ELSFL R+ AF+N R ++ V+ ++
Sbjct: 203 VDAAFNRVAKELGRAYPELGDEFALTAIELSFLTERKQAFDNLAYRVDLEAVKGVVTTMV 262
Query: 260 QSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAI 319
Q++RYGT + +LRVL +E R+ER+M AE+KAA L +TVP+I+F LPVL +VI+GPA
Sbjct: 263 QTERYGTPLASALRVLSAEFRNERMMRAEEKAARLPAIMTVPLILFILPVLFIVILGPAA 322
Query: 320 LSIIDT 325
SI D
Sbjct: 323 CSISDA 328
>gi|148557757|ref|YP_001265339.1| type II secretion system protein [Sphingomonas wittichii RW1]
gi|148502947|gb|ABQ71201.1| type II secretion system protein [Sphingomonas wittichii RW1]
Length = 330
Score = 183 bits (465), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 117/341 (34%), Positives = 190/341 (55%), Gaps = 35/341 (10%)
Query: 2 PHYFFDLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQIT 61
P +F L + +A+ TA+ + + +A+V S+ + +R++++ RE
Sbjct: 7 PQFFDTLL---SIGIALATAIVMLVVGHALV-KSIARDPMARRVRALNDRRE-------- 54
Query: 62 SLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIV--NKLRAA-------GFRSEYS 112
L+ A+S+ R R + + +KAIL ++ ++L+AA G R++ +
Sbjct: 55 QLKAGVAASKTRRRQKMDKKASISVDRMKAILGSMKMLQDSQLKAASLSLTRAGIRTKDA 114
Query: 113 LNILLVVRLVVPIIFLILGIIWIFGYDKLLEYP-------FQLRVGAVILIGYVGFCAPS 165
++ RLV P++ +G + G L +P + + GA+I + AP
Sbjct: 115 AITVIFFRLVSPVL---IGGTAVVGVYVLHWFPEASAFKQYMIVAGALI----ASYKAPD 167
Query: 166 VWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLT 225
V++ NL+ KRQ +I++A PDALDLL+IC E+G+S+D A RVA ++ L +E LT
Sbjct: 168 VYVKNLITKRQQAIRKALPDALDLLVICAEAGLSVDLAFNRVARELSKAYPELGDEFALT 227
Query: 226 IAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLM 285
EL FL +R+ AFEN R +D +R +IQ+++YGT + +LRVL +E R ER+M
Sbjct: 228 AIELGFLTDRRQAFENLAQRVNLDSIRGVVTTMIQTEKYGTPLAAALRVLSAEFRHERMM 287
Query: 286 EAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
AE+KAA L +TVP+I+F LPVL +VI+GPA SI D +
Sbjct: 288 RAEEKAARLPAIMTVPLIMFILPVLFIVILGPAACSIRDNV 328
>gi|294012437|ref|YP_003545897.1| Flp pilus assembly protein TadC [Sphingobium japonicum UT26S]
gi|292675767|dbj|BAI97285.1| Flp pilus assembly protein TadC [Sphingobium japonicum UT26S]
Length = 330
Score = 182 bits (461), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 106/289 (36%), Positives = 170/289 (58%), Gaps = 14/289 (4%)
Query: 41 LEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVN 100
+ KR+K++ RE L+ S + A + + + +R+F+ NLK +L D+ +
Sbjct: 45 MAKRVKALNERREQLKAGITASTARRRAKLVKKNQATDQMRSFLS--NLK-VLQDDQLKE 101
Query: 101 ---KLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYP----FQLRVGAV 153
KL AG RS+ ++ RL++PI+ + + ++ E+ F GA+
Sbjct: 102 AQIKLAQAGIRSKDWAVAVIFGRLILPIVIGGMAALLLYAVGIYPEWGGAKRFMAFAGAL 161
Query: 154 ILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGG 213
+L + AP ++I N +QKR ++I++ PDALDLL+IC E+G+++D A RVA ++G
Sbjct: 162 LL----SYKAPDIFIDNKIQKRSAAIRKGLPDALDLLVICAEAGLTVDAAFSRVARELGK 217
Query: 214 QSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLR 273
L +E LT ELSFL R++AFEN R ++D ++ +IQ+++YGT + +LR
Sbjct: 218 AYPELGDEFHLTAIELSFLTERRMAFENLATRVKLDAIKGVVTTMIQTEKYGTPLASALR 277
Query: 274 VLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
VL +E R ER+M AE+KAA L +TVP+I+F LP L +VI+GPA SI
Sbjct: 278 VLSAEFRHERMMRAEEKAARLPAIMTVPLILFILPTLFVVILGPAACSI 326
>gi|307293454|ref|ZP_07573300.1| Type II secretion system F domain protein [Sphingobium
chlorophenolicum L-1]
gi|306881520|gb|EFN12736.1| Type II secretion system F domain protein [Sphingobium
chlorophenolicum L-1]
Length = 330
Score = 179 bits (453), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 102/285 (35%), Positives = 163/285 (57%), Gaps = 6/285 (2%)
Query: 41 LEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVN 100
+ KR+K++ RE L+ S + A + + + +R+ + L +L D+ +
Sbjct: 45 MAKRVKALNERREQLKAGITASTARRRAKLVKKNQATDQMRSLLSSLK---VLQDDQLKE 101
Query: 101 ---KLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIG 157
KL AG RS+ ++ R+++PI + + ++ E+ R A
Sbjct: 102 AQIKLAQAGIRSKDWAVAVIFGRMILPIAIGGMAALLLYAVGIFPEWGGAKRFMAFAAAL 161
Query: 158 YVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVP 217
+ + AP ++I N VQKR ++I++ PDALDLL+IC E+G+++D A RVA ++G
Sbjct: 162 LLSYKAPDLFIDNKVQKRSAAIRKGLPDALDLLVICAEAGLTVDAAFSRVARELGKAYPE 221
Query: 218 LSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVS 277
L +E LT ELSFL R++AFEN R ++D V+ +IQ+++YGT + +LRVL +
Sbjct: 222 LGDEFHLTAIELSFLTERRMAFENLATRVKLDAVKGVVTTMIQTEKYGTPLASALRVLSA 281
Query: 278 ETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
E R ER+M AE+KAA L +TVP+I+F LP L +VI+GPA SI
Sbjct: 282 EFRHERMMRAEEKAARLPAIMTVPLILFILPTLFVVILGPAACSI 326
>gi|23016184|ref|ZP_00055943.1| COG2064: Flp pilus assembly protein TadC [Magnetospirillum
magnetotacticum MS-1]
Length = 319
Score = 175 bits (443), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 115/289 (39%), Positives = 181/289 (62%), Gaps = 8/289 (2%)
Query: 44 RMKSVAVEREILRKQQITSLQKDSASSRLR----TRDSKSLRNFVKKLNLKAILVDENIV 99
R+K+V+ R L ++Q L + S R R R +R + +L L+ ++ + +
Sbjct: 34 RIKAVSGRRRELSERQKADLDQARGSGRRRGAMPQRRVALMRAVIDRLKLQDLMEAKALK 93
Query: 100 NKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFG-YDKLLEYPFQLRVGAVILIGY 158
KL AG+R + + + R+ +P++ L LG+I+ +D E P +R + +
Sbjct: 94 AKLAQAGWRGQAAPLTFIFARVALPVLLLALGLIYATTLFD---EQPLMIRAMILAVAMG 150
Query: 159 VGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPL 218
G P++W++N VQKRQ ++ RA+PDALDL++ICV++G+S++ AL RV E++ S +
Sbjct: 151 AGGLLPNIWLANAVQKRQLALGRAFPDALDLIVICVDAGLSVETALGRVTEEMMNSSPEM 210
Query: 219 SEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSE 278
+EE+ LT AEL+FL +R+ A+ENF RT + V++ + ALIQS++YGT + +L+VL E
Sbjct: 211 AEEIGLTAAELAFLADRRQAWENFAGRTGLPQVKSLSTALIQSEKYGTPVAQALKVLSQE 270
Query: 279 TRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
R R+ AEKKAA+L KLTVPMI+FFLPVL L+I GPA L + +K
Sbjct: 271 NRESRMAAAEKKAAALPAKLTVPMIVFFLPVLFLMIAGPAALQVSGMLK 319
>gi|332188365|ref|ZP_08390090.1| bacterial type II secretion system F domain protein [Sphingomonas
sp. S17]
gi|332011594|gb|EGI53674.1| bacterial type II secretion system F domain protein [Sphingomonas
sp. S17]
Length = 332
Score = 165 bits (418), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 107/315 (33%), Positives = 171/315 (54%), Gaps = 9/315 (2%)
Query: 16 VAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTR 75
A+ V +F L+ A + +++R++++ RE L K I K A RT
Sbjct: 16 TAMLWGVCVFCLLVAGYMLIGTRDPMKRRVQALNERREQL-KAGIDPSPKRRAQFIERTD 74
Query: 76 DSKSLRNFVKKLNLKAILVDENIVN----KLRAAGFRSEYSLNILLVVRLVVPIIFLILG 131
+ +R + L + + E+ V KL AG RS+ ++ RL +PI
Sbjct: 75 LLERMRRVLSALKM----LQEDQVKAVQLKLLQAGIRSKEMAVAVIFGRLALPIALGGGM 130
Query: 132 IIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLL 191
+W++G + ++ R V + + + AP + + N + KR +I++ PDALDL++
Sbjct: 131 ALWVYGTEDFAQWSGFSRYMMVAGMLVLSYKAPDLALKNQIDKRTHAIRKGLPDALDLMV 190
Query: 192 ICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCV 251
IC E+G+++D A RVA ++ L +E LT EL FL +R+ A EN R +D +
Sbjct: 191 ICAEAGLTVDAAFARVARELRRAYPELGDEFQLTSVELGFLTDRRQALENLSMRVNLDAL 250
Query: 252 RNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLI 311
R +IQ+++YGT + SLRVL +E R+ER+M AE+KAA L +TVP+I+F LP L
Sbjct: 251 RGVVTTMIQTEKYGTPLASSLRVLSAEFRNERMMRAEEKAARLPAIMTVPLILFILPTLF 310
Query: 312 LVIIGPAILSIIDTM 326
+VI+GPA SI DT+
Sbjct: 311 IVILGPAGCSINDTL 325
>gi|218516408|ref|ZP_03513248.1| pilus component protein [Rhizobium etli 8C-3]
Length = 121
Score = 164 bits (415), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 78/119 (65%), Positives = 97/119 (81%)
Query: 206 RVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYG 265
RV+E++G QS PL+EEM+LT AELSFLP+R+VA EN RTQ++ VR+ TQALIQ+DRYG
Sbjct: 1 RVSEELGEQSPPLAEEMVLTTAELSFLPDRRVALENLATRTQIELVRSVTQALIQADRYG 60
Query: 266 TSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIID 324
T + +LRVL E R ER+ EAEKKAA+L PKLTVPMI+FFLPVLI VI+GPA + + D
Sbjct: 61 TPVAQALRVLAQEGRDERMNEAEKKAAALPPKLTVPMILFFLPVLIAVILGPAGIQVAD 119
>gi|197106463|ref|YP_002131840.1| Flp pilus assembly protein TadC [Phenylobacterium zucineum HLK1]
gi|196479883|gb|ACG79411.1| Flp pilus assembly protein TadC [Phenylobacterium zucineum HLK1]
Length = 320
Score = 159 bits (401), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 80/177 (45%), Positives = 113/177 (63%)
Query: 149 RVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVA 208
R+ A + G P + + N +QKR I+RA PDALDL +IC E+G+S+D AL RV+
Sbjct: 141 RLAATLGGAVAGLYLPRLMLKNAIQKRSLKIQRALPDALDLFVICAEAGLSLDAALARVS 200
Query: 209 EDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSI 268
+IG + L++E+ LT EL FLP+R+ A N R VR L+Q+++YGT +
Sbjct: 201 REIGPAAPELADELGLTAVELGFLPDRREALLNLTRRVAAPQVRGLVNTLVQTEKYGTPL 260
Query: 269 GDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDT 325
+LRVL +E R R+M+AE+KAA L LTVPMI F LP L +V+IGPAI+ ++ T
Sbjct: 261 AQALRVLAAEFRDTRMMKAEEKAARLPATLTVPMIAFILPPLFVVLIGPAIVQVLTT 317
>gi|144897440|emb|CAM74304.1| Flp pilus assembly protein TadC [Magnetospirillum gryphiswaldense
MSR-1]
Length = 199
Score = 153 bits (386), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 73/150 (48%), Positives = 109/150 (72%)
Query: 178 SIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQV 237
++ R +PDALDL++ICVE+G+S++ AL +V +++ + L+EE+ LT AEL+FL +R+
Sbjct: 50 ALARGFPDALDLMVICVEAGLSVEAALLKVTDEMANSAPELAEEIGLTAAELAFLGDRRQ 109
Query: 238 AFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPK 297
A++N RT + V++ + AL+QS++YGT + +LRVL E R R+ AEKKAASL K
Sbjct: 110 AWDNLAERTGLAQVKSLSTALVQSEKYGTPVAQALRVLSQENRETRMAAAEKKAASLPAK 169
Query: 298 LTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
LTVPMI+FFLPVL +VI GPA + ++ K
Sbjct: 170 LTVPMIVFFLPVLFIVIAGPAAIQVMAAWK 199
>gi|159043673|ref|YP_001532467.1| type II secretion system protein [Dinoroseobacter shibae DFL 12]
gi|157911433|gb|ABV92866.1| type II secretion system protein [Dinoroseobacter shibae DFL 12]
Length = 331
Score = 143 bits (361), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 84/263 (31%), Positives = 141/263 (53%), Gaps = 1/263 (0%)
Query: 65 KDSASSRLRTRD-SKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVV 123
+D +LR D K L F + L + I KL AG+R + S+ I +L +
Sbjct: 63 EDGKGKQLRQDDPGKKLERFSQYLEPQDNEELSAIRLKLIQAGYRQKSSVQIFHFAQLAL 122
Query: 124 PIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAW 183
+ FL +G+I+ F + + ++ G+ G+ P W+ + KRQ I +
Sbjct: 123 GLGFLSIGVIYTFFFGGGEDPDVTKATLTTLVPGFCGYYLPKYWVDKRIDKRQEEITNGF 182
Query: 184 PDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFY 243
PD+LDL+L+CVE+G +DQA+ RVA +I L++E + E+ ++ ++
Sbjct: 183 PDSLDLMLVCVEAGQGLDQAIIRVAHEIRAGYPDLADEFEMVAFEIKAGKDKITVLKDMA 242
Query: 244 NRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMI 303
R + V + LIQS +GTSI D+LRV E R +R+M AE+KA L KLT+ +
Sbjct: 243 ERCGVGDVTSFVTVLIQSQSFGTSIADALRVYAGEMRDKRVMRAEEKANVLPTKLTLGTM 302
Query: 304 IFFLPVLILVIIGPAILSIIDTM 326
+F +P L++++IGP++ SI +++
Sbjct: 303 MFTVPPLLIILIGPSMWSIYESL 325
>gi|258405283|ref|YP_003198025.1| Type II secretion system F domain-containing protein
[Desulfohalobium retbaense DSM 5692]
gi|257797510|gb|ACV68447.1| Type II secretion system F domain protein [Desulfohalobium
retbaense DSM 5692]
Length = 320
Score = 141 bits (355), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 100/330 (30%), Positives = 173/330 (52%), Gaps = 29/330 (8%)
Query: 10 DATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSAS 69
D L +A VS+F L+ V+ + ++S + +R IL K Q TS Q+ +
Sbjct: 4 DYLPLIMAGAIFVSLFLLMIGVM----------QLVRSNSKKRAILEKIQ-TSNQQSAFG 52
Query: 70 SRLRTRDSKSLRNFVKKLNLKAILVDENIVN-----------KLRAAGFRSEYSLNILLV 118
R S+S F K+ LV + + + AG RS + +
Sbjct: 53 DPQRLDSSRS--GFFGKIFGFVGLVGQKVAKDRVSDHTVLRPRFLKAGIRSPLAPAVFWG 110
Query: 119 VRLVVPIIF-LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQS 177
+++++P+ L G+ + D L L + + ++ GF P +W++N QKR+
Sbjct: 111 LKVIMPLALPLCFGLFYYLIPDLTLSPTNTLLI--ITVLAVAGFYVPDLWLTNKRQKRRQ 168
Query: 178 SIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEM-LLTIAELSFLPNRQ 236
+I + +PDALDL+++CVE+G+ +D A+ RVA++ + LSEE+ T+ + +P R+
Sbjct: 169 TILKGFPDALDLMVVCVEAGMGLDAAISRVAKESKSNNATLSEELHFFTLETRAGMP-RK 227
Query: 237 VAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGP 296
A +N RT + ++N T LIQ++++GTS+ +L+V R+ER AE+KAA +
Sbjct: 228 DALKNLAMRTDLQQMQNLTTLLIQTEKFGTSVSQALKVFSESMRTERFQRAEEKAAKIPV 287
Query: 297 KLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
KL P+I+F P L + I+GPA++ I T+
Sbjct: 288 KLLFPLIMFIFPSLFVAILGPAVIRISQTL 317
>gi|91788419|ref|YP_549371.1| type II secretion system protein [Polaromonas sp. JS666]
gi|91697644|gb|ABE44473.1| type II secretion system protein [Polaromonas sp. JS666]
Length = 314
Score = 138 bits (348), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 72/163 (44%), Positives = 106/163 (65%)
Query: 160 GFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLS 219
G+ P+V + NL+ +RQ I ++PDALDL+ +CVE+G+++D AL RVA +IG +S LS
Sbjct: 140 GYYLPNVLLKNLISRRQREIFESFPDALDLMTVCVEAGLAMDAALARVASEIGLKSAVLS 199
Query: 220 EEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSET 279
EE+ L EL +++ A N RT +D V LIQS+R+GTSI DSLRV +
Sbjct: 200 EELQLVTLELRAGSSKEKALRNLALRTGVDDVDALVAMLIQSERFGTSIADSLRVQSDQL 259
Query: 280 RSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
R++R AE++AA + KL P+I F P L++V++GPA + I
Sbjct: 260 RTKRRQRAEEQAAKIALKLLFPLIFFIFPSLLVVLMGPAFIQI 302
>gi|254475205|ref|ZP_05088591.1| type II/IV secretion system protein, TadC subfamily [Ruegeria sp.
R11]
gi|214029448|gb|EEB70283.1| type II/IV secretion system protein, TadC subfamily [Ruegeria sp.
R11]
Length = 327
Score = 137 bits (344), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 77/274 (28%), Positives = 146/274 (53%), Gaps = 1/274 (0%)
Query: 52 REILRKQQITSLQKDSASSRLRTRD-SKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSE 110
+++ R ++ K RLR D ++ L+ F L + + KLR AG++S+
Sbjct: 48 KKLQRSMSESTRDKKPQKERLRQADRNEQLQKFASFLEPQNADELSAMELKLRQAGYQSK 107
Query: 111 YSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISN 170
S+ + + + ++ L+ G+++++ + +EY Q + +I G + P WI+
Sbjct: 108 DSVRLFHFAQFALGLVGLVAGLVYVYVLNADMEYDSQQMIIRIIGPGAAAYMLPKYWITR 167
Query: 171 LVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELS 230
+++R+ I +PDALD++L+CVE+G S+DQA+ RVA+++ L+EE + E+
Sbjct: 168 RIEERKQEITSGFPDALDMMLVCVEAGQSLDQAIVRVAKELHASYPALAEEFEVVAYEMK 227
Query: 231 FLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKK 290
+ + R + V + +IQS +GTSI D+LRV E R +R+M AE+
Sbjct: 228 AGKEKDKVLRDMGTRCGVQDVSSFVTVMIQSATFGTSIADALRVYAGEMRDKRVMRAEEA 287
Query: 291 AASLGPKLTVPMIIFFLPVLILVIIGPAILSIID 324
A L K+T+ + +P L+++++GP+ I +
Sbjct: 288 ANKLPTKMTLATMTLTVPPLLIILVGPSAQGIAN 321
>gi|292491527|ref|YP_003526966.1| type II secretion system protein [Nitrosococcus halophilus Nc4]
gi|291580122|gb|ADE14579.1| type II secretion system protein [Nitrosococcus halophilus Nc4]
Length = 320
Score = 136 bits (342), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 81/232 (34%), Positives = 128/232 (55%), Gaps = 10/232 (4%)
Query: 99 VNKLRAAGFRSEYSLNILLVVRL----VVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVI 154
KL AG+RS +L + ++L ++P I + L I+ Y K FQ+ V +
Sbjct: 92 TTKLVHAGYRSGNALTLFYAIKLLSGIILPAIAIFLTTIF---YPKFTT--FQI-VFLGL 145
Query: 155 LIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQ 214
+ ++G P++ + L++KRQ I +PD LDLL+ C E+G+ ++ AL+RVAE+
Sbjct: 146 FLSFIGLLFPNIVLERLIKKRQRQIYNGFPDVLDLLITCTEAGLGLNAALKRVAEECAVS 205
Query: 215 SVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRV 274
LS E+ L E+ NR A +NF R ++ + + L QS R+GTSI D+LR+
Sbjct: 206 HPVLSGELTLVNMEIRAGVNRVEALKNFSARAGIEEIHSFVAFLSQSLRFGTSIADTLRI 265
Query: 275 LVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
E R +R+ AE+ AA +G K+ P+I LP LV IGPA+L ++ +
Sbjct: 266 YSDEFRDKRMQRAEEMAAKMGTKMIFPLIFCILPSFFLVAIGPAVLGVLKAL 317
>gi|255264846|ref|ZP_05344188.1| type II secretion system protein [Thalassiobium sp. R2A62]
gi|255107181|gb|EET49855.1| type II secretion system protein [Thalassiobium sp. R2A62]
Length = 323
Score = 135 bits (341), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 76/273 (27%), Positives = 145/273 (53%), Gaps = 3/273 (1%)
Query: 55 LRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLN 114
L++ +T Q+DS T +F++ + + I KL AG+R + ++
Sbjct: 50 LKRNNVTPGQRDSLRFNQGTDKLDKYADFLEPQDEEEY---SAIRLKLLQAGYRGKSAVR 106
Query: 115 ILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQK 174
+ + I L+ G+ + E Q + ++++ G VG+ AP W++ Q
Sbjct: 107 TFHFAQFALGIALLLAGVAYAIYNSTAGEPSTQSTIMSILIPGCVGYMAPKYWVTKRQQT 166
Query: 175 RQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPN 234
RQ +I +PD+LD++L+CVE+G S+DQ++ RV++++ L+ E + E+ +
Sbjct: 167 RQEAITNGFPDSLDMMLVCVEAGQSLDQSILRVSQELKSGFPDLASEYEIVSHEMKAGKD 226
Query: 235 RQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASL 294
+ + R + + + LIQS +GTSI ++LRV E R +R+M AE+KA +L
Sbjct: 227 KTSVLRDMSERCGVPDIASFVTVLIQSQSFGTSIAEALRVYAGEMRDKRVMRAEEKANTL 286
Query: 295 GPKLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
K+T+ ++ +P L++++IGP++ I +T+K
Sbjct: 287 PTKMTLATMMLTVPPLLIILIGPSVYGIAETLK 319
>gi|84501671|ref|ZP_00999843.1| type II/IV secretion system protein, TadC subfamily protein
[Oceanicola batsensis HTCC2597]
gi|84390292|gb|EAQ02851.1| type II/IV secretion system protein, TadC subfamily protein
[Oceanicola batsensis HTCC2597]
Length = 330
Score = 135 bits (341), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 88/276 (31%), Positives = 146/276 (52%), Gaps = 10/276 (3%)
Query: 57 KQQITSLQKDSASSRLRTRDSKS-LRNFVKKLNLK---AILVDENIVN------KLRAAG 106
K+++ L+K + T D+K LRN + L+ + L +N KL AG
Sbjct: 38 KKEVDPLEKLKQNGTPATADNKDKLRNNKRNQRLERYSSFLEPQNEKEYSAMRIKLLQAG 97
Query: 107 FRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSV 166
+RS+ S+ + + I L+ G+I+ + Q V ++ G VG+ P
Sbjct: 98 YRSKDSVRYFHFAQFALGIFGLLGGVIYFIAVKAADQPDTQTTVMYILGPGGVGYLIPKY 157
Query: 167 WISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTI 226
WI+ +RQ I +PDALD+LL+CVE+G S+DQA+ RVA++I L++E L
Sbjct: 158 WINKRQAQRQEEITNGFPDALDMLLVCVEAGQSMDQAILRVAKEIRVSYPSLADEFELVS 217
Query: 227 AELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLME 286
E+ ++ + R + + + LIQS +GTS+ D+LRV SE R +R+M
Sbjct: 218 HEIKAGKDKASVLGDMAERCGVPDIASFVTVLIQSASFGTSVADALRVYASEMRDKRVMR 277
Query: 287 AEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
AE+KA L K+T+ ++ +P L++++IGP++L I
Sbjct: 278 AEEKANKLPTKMTLATMMLTVPPLLIILIGPSVLGI 313
>gi|260427288|ref|ZP_05781267.1| type II/IV secretion system protein, TadC subfamily [Citreicella
sp. SE45]
gi|260421780|gb|EEX15031.1| type II/IV secretion system protein, TadC subfamily [Citreicella
sp. SE45]
Length = 324
Score = 134 bits (338), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 78/280 (27%), Positives = 151/280 (53%), Gaps = 11/280 (3%)
Query: 54 ILRKQQITSLQKDSASSRLR-----------TRDSKSLRNFVKKLNLKAILVDENIVNKL 102
+L +Q+ + K + S R R TR + L + + L K+ + KL
Sbjct: 36 LLLRQKPDPMDKLAKSGRARIDAETKAILRDTRRNAKLNKYAQYLEPKSAEELGQMRLKL 95
Query: 103 RAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFC 162
AG+R+ S+ + + ++V+ + L G + + + Q ++ ++ G VG+
Sbjct: 96 LQAGYRTPDSVRLYYLAQMVLGLGLLAAGTAYYVMFKDGPDATMQTKLMYIVGPGAVGYL 155
Query: 163 APSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEM 222
AP WI+ V++R+ I+ +PDALD++L+CVE+G S+DQ++ RV++++ L++E
Sbjct: 156 APKYWITKRVEERKKQIEEGFPDALDMMLVCVEAGQSLDQSIVRVSKELRASYPALADEF 215
Query: 223 LLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSE 282
+ E+ ++ + R + V + L Q+ +GTSI D+LR+ SE R +
Sbjct: 216 EIISHEMRAGKDKSNVLNDMGERCGVQDVSSFVTVLNQAANFGTSIADALRIYASEMRDK 275
Query: 283 RLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
R+M AE+KA L K+T+ ++ +P L+++++GP+++SI
Sbjct: 276 RVMRAEEKANKLPTKMTLTTMMLTVPPLLIILVGPSVVSI 315
>gi|146276356|ref|YP_001166515.1| type II secretion system protein [Rhodobacter sphaeroides ATCC
17025]
gi|145554597|gb|ABP69210.1| type II secretion system protein [Rhodobacter sphaeroides ATCC
17025]
Length = 323
Score = 134 bits (338), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 82/255 (32%), Positives = 137/255 (53%), Gaps = 9/255 (3%)
Query: 77 SKSLR--NFVKKLNLKAILVDENIVNKLRA-------AGFRSEYSLNILLVVRLVVPIIF 127
S++LR + +KL+ A L++ +L A AG+RS+ ++ + + + F
Sbjct: 62 SQALRRSSGTEKLDRFANLLEPKTAEELSASRLKMMRAGYRSKGAVRAFHAAQFALGVGF 121
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
L+LG+++ Q V +L G +G+ P WI Q+R I +PDAL
Sbjct: 122 LVLGVLYALLASATAPLTMQQMVIYTLLPGAIGYYLPVYWIKRRAQERHDQIVAGFPDAL 181
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQ 247
D++L+CVE+G S+DQ++ RVA + L+EE + E+ R ++ R
Sbjct: 182 DMMLVCVEAGQSLDQSILRVARESASGYPALAEEFEMVAHEVKAGKERVAVLKDMAERVG 241
Query: 248 MDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFL 307
+ V + LIQS +GTSI ++LRV SE R +R+M AE+KA +L KLT+ ++ +
Sbjct: 242 IPDVSSFVTTLIQSATFGTSIAEALRVYSSEMRDKRVMRAEEKANTLPTKLTLGTMLLTV 301
Query: 308 PVLILVIIGPAILSI 322
P L+L++IGP++ I
Sbjct: 302 PPLMLILIGPSVYGI 316
>gi|89068023|ref|ZP_01155440.1| type II/IV secretion system protein, TadC subfamily protein
[Oceanicola granulosus HTCC2516]
gi|89046262|gb|EAR52319.1| type II/IV secretion system protein, TadC subfamily protein
[Oceanicola granulosus HTCC2516]
Length = 987
Score = 134 bits (338), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 76/274 (27%), Positives = 148/274 (54%), Gaps = 18/274 (6%)
Query: 71 RLRTRDSKSLRNFVKKLNLKAILVDENIVN------------------KLRAAGFRSEYS 112
RL+ R+S +N +K L+ + + KL AG+R++ +
Sbjct: 709 RLKRRESDETKNLMKGEKLRQKKGTDKLDKYSNFLEPQDKAEYSAIQLKLLQAGYRTKNA 768
Query: 113 LNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLV 172
+ + + + I+ L+LG+ + ++ + Q + ++++ G G+ P W++
Sbjct: 769 VRLYHFAQFALGIVMLLLGVAYAIWKNQTGDPTTQSTILSILIPGSAGYMLPKYWVNKRQ 828
Query: 173 QKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFL 232
Q+RQ I+ +PD+LD++L+CVE+G S+DQ++ RVA ++ L+ E L E+
Sbjct: 829 QERQQEIENGFPDSLDMMLVCVEAGQSLDQSIIRVARELKTGFPALAWEYELVAYEMKAG 888
Query: 233 PNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAA 292
++ ++ R ++ V + LIQS ++GTSI ++LRV E R +R+M AE+KA
Sbjct: 889 KDKISVLKDMSERCGVNDVASFVTVLIQSQQFGTSIAEALRVYAGEMRDKRVMRAEEKAN 948
Query: 293 SLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
+L K+T+ ++ +P L++++IGP++ I DT+
Sbjct: 949 TLPTKMTLATMMLTVPPLLIILIGPSVFDIYDTL 982
>gi|332560332|ref|ZP_08414654.1| Type II secretion system protein [Rhodobacter sphaeroides WS8N]
gi|332278044|gb|EGJ23359.1| Type II secretion system protein [Rhodobacter sphaeroides WS8N]
Length = 326
Score = 133 bits (335), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 81/252 (32%), Positives = 132/252 (52%), Gaps = 4/252 (1%)
Query: 73 RTRDSKSLRNFVKKLNLKAILVDENIVNKLRA--AGFRSEYSLNILLVVRLVVPIIFLIL 130
R S+ L F L K +E ++L+ AG+RS+ ++ + + + FL+
Sbjct: 70 RASGSEKLDRFANLLEPKT--AEEMSASRLKMMRAGYRSKGAVRAFHAAQFALGVGFLVA 127
Query: 131 GIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLL 190
G+++ Q V IL G +G+ P WI Q+R I +PDALD++
Sbjct: 128 GLLYAMVASAAAPLTMQQMVLYTILPGAIGYYLPVYWIKRRAQERYDQIVSGFPDALDMM 187
Query: 191 LICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDC 250
L+CVE+G S+DQ++ RVA + L+EE + E+ R ++ R +
Sbjct: 188 LVCVEAGQSLDQSILRVARESAAGYPALAEEFEMVAHEVKAGKERVAVLKDMSERVGIPD 247
Query: 251 VRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVL 310
V + LIQS +GTSI ++LRV SE R +R+M AE+KA +L KLT+ ++ +P L
Sbjct: 248 VSSFVTTLIQSATFGTSIAEALRVYSSEMRDKRVMRAEEKANTLPTKLTLGTMLLTVPPL 307
Query: 311 ILVIIGPAILSI 322
+L++IGP++ I
Sbjct: 308 MLILIGPSVYGI 319
>gi|149915637|ref|ZP_01904163.1| type II/IV secretion system protein, TadC subfamily [Roseobacter
sp. AzwK-3b]
gi|149810529|gb|EDM70372.1| type II/IV secretion system protein, TadC subfamily [Roseobacter
sp. AzwK-3b]
Length = 328
Score = 133 bits (335), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 72/257 (28%), Positives = 138/257 (53%), Gaps = 1/257 (0%)
Query: 69 SSRLRT-RDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIF 127
++RLRT R ++ L + L + + L AG+R+ ++ +L + + F
Sbjct: 65 TTRLRTNRKNEKLDKYASFLEPQDAKALSQVRLTLLQAGYRTRDAVRYYHFAQLTLALGF 124
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
L LG+++ + E Q + ++ G +G+ P W++ Q+RQ I +PD+L
Sbjct: 125 LTLGVLYFLIFKSGGETSAQQTILYILGPGAIGYMLPKYWVTKRQQQRQEDITNGFPDSL 184
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQ 247
D++L CVE+G S+DQ++ RV+ +I L+EE + ++ ++ R
Sbjct: 185 DMMLTCVEAGQSLDQSIVRVSNEIAASYPALAEEYQIVANQIKAGRDKPSVLNEMAERCG 244
Query: 248 MDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFL 307
+ + + L+QS +GTSI D+LRV E R +R+M AE+KA L K+T+ ++ +
Sbjct: 245 VQDISSFVTVLVQSQTFGTSIADALRVYAGEMRDKRVMRAEEKANKLPTKMTLATMMLTV 304
Query: 308 PVLILVIIGPAILSIID 324
P L+++++GP+++ I++
Sbjct: 305 PPLLIILVGPSVIGILE 321
>gi|288956974|ref|YP_003447315.1| type II secretion system [Azospirillum sp. B510]
gi|288909282|dbj|BAI70771.1| type II secretion system [Azospirillum sp. B510]
Length = 334
Score = 133 bits (334), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 79/248 (31%), Positives = 139/248 (56%), Gaps = 1/248 (0%)
Query: 78 KSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFG 137
+S + L + I +L AGFR ++++ L +LV + + L ++ + G
Sbjct: 85 RSAHGILGSLAMANAAEQARIRQRLLNAGFRDPETVSLFLTAKLVFGLAAIALAMVAVLG 144
Query: 138 YDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESG 197
+D L+ R GA+I Y G P ++ L ++RQS+I R PDALDLL+IC +G
Sbjct: 145 FD-LVSGGAVPRFGAIIAAAYAGTILPERILALLAKRRQSAIARTLPDALDLLIICANAG 203
Query: 198 ISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQA 257
S+D +L RV ++ + +SEE+++T EL L +R+ A N R ++ +R+
Sbjct: 204 YSLDLSLARVGREMRLAARAMSEELVITADELRVLTDRREALRNLAERNDLEALRSLVAT 263
Query: 258 LIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGP 317
L+Q+ +YGT + +LR L +E R R+M E++AA L ++VP+++ LP + +++ GP
Sbjct: 264 LLQAQKYGTPLTQALRTLAAEMRHARMMAIEERAARLPALISVPLMVLILPAVFIIVAGP 323
Query: 318 AILSIIDT 325
A++ + T
Sbjct: 324 AVIQVART 331
>gi|148253057|ref|YP_001237642.1| hypothetical protein BBta_1517 [Bradyrhizobium sp. BTAi1]
gi|146405230|gb|ABQ33736.1| putative membrane protein of unknown function [Bradyrhizobium sp.
BTAi1]
Length = 320
Score = 132 bits (332), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 72/223 (32%), Positives = 133/223 (59%), Gaps = 9/223 (4%)
Query: 109 SEYSLNILLVVRLVVPIIFLIL----GIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAP 164
++ +++ +V R+V + F L + W F + + L + A I+ VG+ +P
Sbjct: 99 ADRAMSYFVVARVVFALSFATLTAAAAVHWAFSGAR-----WWLPIMAAIVAAIVGWISP 153
Query: 165 SVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLL 224
+I ++V+++ ++ PDAL+LL++CVE+G+S+++ L RVA ++ L++E++L
Sbjct: 154 IFYIDHVVRQQTKAVASGLPDALELLVVCVEAGLSLEEGLHRVAHELREAQPALADELVL 213
Query: 225 TIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERL 284
T AE++ LP+R A NF R + VR+ L QS + GT + SLRV E R++++
Sbjct: 214 TWAEINVLPSRAQALTNFAARNDIPSVRSVVSMLSQSLQLGTPLAQSLRVGAVEMRNDQM 273
Query: 285 MEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
M E++A+ L LT+P+++F +P + L++ GPA L +ID +
Sbjct: 274 MLLEERASRLPAMLTIPVMLFIMPTVFLLVGGPAALRLIDMFQ 316
>gi|260431089|ref|ZP_05785060.1| type II/IV secretion system protein, TadC subfamily [Silicibacter
lacuscaerulensis ITI-1157]
gi|260414917|gb|EEX08176.1| type II/IV secretion system protein, TadC subfamily [Silicibacter
lacuscaerulensis ITI-1157]
Length = 327
Score = 132 bits (332), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 68/224 (30%), Positives = 129/224 (57%)
Query: 101 KLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVG 160
KLR AG+ S+ ++ + + II +++G++ + + E+ Q + V++ G +G
Sbjct: 98 KLRQAGYVSKDAVRFFHFAQFSLGIIGIVIGVLLVTVFSNGQEFSGQQVLIRVLVPGAIG 157
Query: 161 FCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSE 220
+ P WI+ V++R+ +I +PD LDL+L+CVE+G S+DQA+ RVA ++ +++
Sbjct: 158 YYLPKYWITRRVEERKEAITAGFPDTLDLMLVCVEAGQSLDQAIVRVASEMKSSYPDIAQ 217
Query: 221 EMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETR 280
E + E+ ++ +F R + V + +IQS +GTSI D+LRV E R
Sbjct: 218 EFEIVAYEMKAGKDKNQVLRDFGTRCGVQDVSSFVTVMIQSATFGTSIADALRVYAGEMR 277
Query: 281 SERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIID 324
+R+M AE+ A L K+T+ ++ +P L+++++GP+ I++
Sbjct: 278 DKRVMRAEEAANKLPTKMTLATMMLTVPPLLIILVGPSAKGIME 321
>gi|126461326|ref|YP_001042440.1| type II secretion system protein [Rhodobacter sphaeroides ATCC
17029]
gi|221638311|ref|YP_002524573.1| Type II secretion system protein [Rhodobacter sphaeroides KD131]
gi|126102990|gb|ABN75668.1| type II secretion system protein [Rhodobacter sphaeroides ATCC
17029]
gi|221159092|gb|ACM00072.1| Type II secretion system protein [Rhodobacter sphaeroides KD131]
Length = 326
Score = 132 bits (331), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 81/252 (32%), Positives = 131/252 (51%), Gaps = 4/252 (1%)
Query: 73 RTRDSKSLRNFVKKLNLKAILVDENIVNKLRA--AGFRSEYSLNILLVVRLVVPIIFLIL 130
R S+ L F L K +E ++L+ AG+RS+ ++ + + + FL
Sbjct: 70 RASGSEKLDRFANLLEPKT--AEEMSASRLKMMRAGYRSKGAVRAFHAAQFALGVGFLAA 127
Query: 131 GIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLL 190
G+++ Q V IL G +G+ P WI Q+R I +PDALD++
Sbjct: 128 GLLYAMVASAAAPLTMQQMVLYTILPGAIGYYLPVYWIKRRAQERYDQIVSGFPDALDMM 187
Query: 191 LICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDC 250
L+CVE+G S+DQ++ RVA + L+EE + E+ R ++ R +
Sbjct: 188 LVCVEAGQSLDQSILRVARESAAGYPALAEEFEMVAHEVKAGKERVAVLKDMSERVGIPD 247
Query: 251 VRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVL 310
V + LIQS +GTSI ++LRV SE R +R+M AE+KA +L KLT+ ++ +P L
Sbjct: 248 VSSFVTTLIQSATFGTSIAEALRVYSSEMRDKRVMRAEEKANTLPTKLTLGTMLLTVPPL 307
Query: 311 ILVIIGPAILSI 322
+L++IGP++ I
Sbjct: 308 MLILIGPSVYGI 319
>gi|126737249|ref|ZP_01752984.1| type II/IV secretion system protein, TadC subfamily [Roseobacter
sp. SK209-2-6]
gi|126721834|gb|EBA18537.1| type II/IV secretion system protein, TadC subfamily [Roseobacter
sp. SK209-2-6]
Length = 322
Score = 131 bits (330), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 72/262 (27%), Positives = 146/262 (55%), Gaps = 1/262 (0%)
Query: 64 QKDSASSRLRTRD-SKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLV 122
+K ++ RLR D ++ L+ F L + + KLR AG+ S+ ++ +L
Sbjct: 55 RKSASKERLRQNDRNEQLQKFATFLEPQDAEELSAMELKLRQAGYLSKDAVRFFFFAQLA 114
Query: 123 VPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRA 182
+ +I L G+ +++ + + + Q + ++ G VG+ P W++ V++R+ I++
Sbjct: 115 LALIGLAGGMFYVYVLNADMTFDTQQLLIRIVGPGAVGYMLPKYWVTRRVEERRQKIEQG 174
Query: 183 WPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENF 242
+PD+LD++L+CVE+G S+DQ++ RVA ++ L+ E + E+ +++ +
Sbjct: 175 FPDSLDMMLVCVEAGQSLDQSIVRVATELRASFPDLAYEFEIVAQEMKAGKDKEKVLRDM 234
Query: 243 YNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPM 302
R + + + +IQS +GTSI D+LRV E R +R+M AE+ A L K+T+
Sbjct: 235 GTRCGVQDISSFVTVMIQSQSFGTSIADALRVYAGEMRDKRVMRAEEAANKLPVKMTLAT 294
Query: 303 IIFFLPVLILVIIGPAILSIID 324
++ +P L+++++GP++ I++
Sbjct: 295 MMLTVPPLLIILVGPSVQGILN 316
>gi|149200852|ref|ZP_01877827.1| type II/IV secretion system protein, TadC subfamily [Roseovarius
sp. TM1035]
gi|149145185|gb|EDM33211.1| type II/IV secretion system protein, TadC subfamily [Roseovarius
sp. TM1035]
Length = 326
Score = 131 bits (330), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 80/282 (28%), Positives = 149/282 (52%), Gaps = 11/282 (3%)
Query: 54 ILRKQQ--ITSLQKDSASSRLRTRDSKSLRNFV--KKLNLKAILVD-------ENIVNKL 102
+LR++Q + L++++ S SLR V KKL+ A ++ I KL
Sbjct: 39 MLRQKQDPLEKLKQENQRSSTSVGTKTSLRAGVQNKKLDRYATFLEPQDAKQLSQIRLKL 98
Query: 103 RAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFC 162
AG+R ++ + + + LILG+I+ E Q + ++ +G+
Sbjct: 99 MQAGYRHRDAVRYFHFAQFALGVGLLILGVIYYVLVKSGTETSTQETLMYILGPAGIGYM 158
Query: 163 APSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEM 222
P W++ QKRQ I+ +PD+LD++L+C+E+G S+DQ++ RVA ++ L++E
Sbjct: 159 MPKYWVTKRQQKRQEEIQDGFPDSLDMMLVCIEAGQSMDQSIIRVASEMRASYPALADEF 218
Query: 223 LLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSE 282
+ ++ ++ R + + + L+QS +GTSIG++LRV E R +
Sbjct: 219 EIVALQIKAGRDKPSVLGEMAERCGVQDISSFVTVLVQSQTFGTSIGEALRVYAGEMRDK 278
Query: 283 RLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIID 324
R+M AE+KA L K+T+ ++ +P L+++++GP++L I+D
Sbjct: 279 RVMRAEEKANKLPTKMTLATMMLTVPPLLIILVGPSVLGIMD 320
>gi|77462448|ref|YP_351952.1| putative Flp pilus assembly protein TadC [Rhodobacter sphaeroides
2.4.1]
gi|77386866|gb|ABA78051.1| Putative Flp pilus assembly protein TadC [Rhodobacter sphaeroides
2.4.1]
Length = 326
Score = 131 bits (330), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 81/252 (32%), Positives = 131/252 (51%), Gaps = 4/252 (1%)
Query: 73 RTRDSKSLRNFVKKLNLKAILVDENIVNKLRA--AGFRSEYSLNILLVVRLVVPIIFLIL 130
R S+ L F L K +E ++L+ AG+RS+ ++ + + + FL
Sbjct: 70 RASGSEKLDRFANLLEPKT--AEEMSASRLKMMRAGYRSKGAVRAFHAAQFALGVGFLAA 127
Query: 131 GIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLL 190
G+++ Q V IL G +G+ P WI Q+R I +PDALD++
Sbjct: 128 GLLYAMVASAAAPLTMQQMVLYTILPGAIGYYLPVYWIKRRAQERYDQIVSGFPDALDMM 187
Query: 191 LICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDC 250
L+CVE+G S+DQ++ RVA + L+EE + E+ R ++ R +
Sbjct: 188 LVCVEAGQSLDQSILRVARESAAGYPALAEEFEIVAHEVKAGKERVAVLKDMSERVGIPD 247
Query: 251 VRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVL 310
V + LIQS +GTSI ++LRV SE R +R+M AE+KA +L KLT+ ++ +P L
Sbjct: 248 VSSFVTTLIQSATFGTSIAEALRVYSSEMRDKRVMRAEEKANTLPTKLTLGTMLLTVPPL 307
Query: 311 ILVIIGPAILSI 322
+L++IGP++ I
Sbjct: 308 MLILIGPSVYGI 319
>gi|126725975|ref|ZP_01741817.1| type II/IV secretion system protein, TadC subfamily
[Rhodobacterales bacterium HTCC2150]
gi|126705179|gb|EBA04270.1| type II/IV secretion system protein, TadC subfamily
[Rhodobacterales bacterium HTCC2150]
Length = 318
Score = 131 bits (329), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 83/273 (30%), Positives = 144/273 (52%), Gaps = 20/273 (7%)
Query: 52 REILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEY 111
R LR+++ + Q D S L+ +D L + KL AG+ S+
Sbjct: 60 RTSLRQKRNKADQLDKYSEFLQPKDEGQL---------------SEMRLKLLQAGYSSKS 104
Query: 112 SLNILLVVRLVVPIIFLILGIIWIFGY--DKLLEYPFQLRVGAVILIGYVGFCAPSVWIS 169
++ ++ + II LI G I+ F D+ + +G G G+ P W++
Sbjct: 105 AVQTFHFLQFALGIIGLIFGCIYAFTMLPDETTSKQMLMYIGGP---GGAGYMLPKYWVT 161
Query: 170 NLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAEL 229
RQ +I +A+PD+LDL+LICVESG S+DQA+ +V+++I L++E L E+
Sbjct: 162 RRRGTRQKNIIQAFPDSLDLMLICVESGQSLDQAIIKVSKEIRAGYPDLADEFELVAYEI 221
Query: 230 SFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEK 289
+++ ++F R + + + LIQ+ YGT I ++LR +E R +R+M AE+
Sbjct: 222 KAGKDKKRVLKDFSERCGVPDISSFVSVLIQAATYGTPIAEALRAYSAEMRDKRVMRAEE 281
Query: 290 KAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
KA +L K+T+ ++F LP L+++++GPA+ I
Sbjct: 282 KANTLPVKMTLGTMVFCLPSLLIILVGPAVYKI 314
>gi|77919352|ref|YP_357167.1| Flp pilus assembly protein TadC [Pelobacter carbinolicus DSM 2380]
gi|77545435|gb|ABA88997.1| Flp pilus assembly protein TadC [Pelobacter carbinolicus DSM 2380]
Length = 326
Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 97/323 (30%), Positives = 167/323 (51%), Gaps = 10/323 (3%)
Query: 4 YFFDLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSL 63
Y+ L +A AV I T +++ ++ + + L E+R++ + +I K++ L
Sbjct: 8 YYRLLENAGYWAVLILTFLTVALIVMGIYLLFLRKSREEERLEKLLPSSKIPFKKKPKLL 67
Query: 64 QKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVV 123
+ + TR +K + V K + ++I +L AG+RS + + ++++
Sbjct: 68 EGEGNG--FVTRFAKPIDEIVAN---KPGALHKSIRLRLIQAGWRSNAAYYNFITTKVLL 122
Query: 124 PIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAW 183
+IF + +I F + L++ + A+I GF P + +V+ RQ+ I RA
Sbjct: 123 GLIFPLSYLISRFFFTFSLQFVLLCLLLAII-----GFGLPDSILGFVVRSRQNRIMRAL 177
Query: 184 PDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFY 243
PDALDL+++CVE+G+ +D RRV E+I S LS+E LT E+ R F+N
Sbjct: 178 PDALDLMVVCVEAGLGLDMTFRRVGEEIRPLSHDLSDEFHLTNLEIRAGKPRNECFKNMS 237
Query: 244 NRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMI 303
RT + V N LIQ+ R+GTS+ +LRV R +R AE+KAA KL P++
Sbjct: 238 LRTGVPEVSNLMTILIQTSRFGTSLAKALRVHSDAMRIKRRQIAEEKAAKSTVKLIFPLV 297
Query: 304 IFFLPVLILVIIGPAILSIIDTM 326
F P + +V++GP ++ II+ +
Sbjct: 298 FFIFPAIFVVLVGPGVIRIINVL 320
>gi|254463054|ref|ZP_05076470.1| type II/IV secretion system protein, TadC subfamily
[Rhodobacterales bacterium HTCC2083]
gi|206679643|gb|EDZ44130.1| type II/IV secretion system protein, TadC subfamily
[Rhodobacteraceae bacterium HTCC2083]
Length = 323
Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 77/273 (28%), Positives = 147/273 (53%), Gaps = 9/273 (3%)
Query: 57 KQQITSLQKDSASSRLRT-RDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNI 115
K+Q+ RLR + +K L + K L K I KL AG+R + ++ +
Sbjct: 51 KEQMQGKAAGEDRQRLRAAKGNKQLGKYAKLLEPKDEAEYSAIRLKLIQAGYRDKDAVRL 110
Query: 116 LLVVRLVVPIIFLILGIIW----IFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNL 171
++++++ +IFL++G+++ I G + + +G G G+ P WI+
Sbjct: 111 FHLMQMILGVIFLVIGLLYYTFVISGENATTQQMLMYVLGP----GGAGYFLPKYWITRR 166
Query: 172 VQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSF 231
+ R+ I+ +PD+LD++L+CVE+G S+DQ++ RVA ++ L++E + E+
Sbjct: 167 IDTRKEQIESGFPDSLDMMLVCVEAGQSLDQSIVRVAAELHHSYPFLADEYEIVAQEMKA 226
Query: 232 LPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKA 291
++ + R + V + LIQS +GTSI ++LRV E R +R+M AE+KA
Sbjct: 227 GKDKIAVLNDMSERCGVQDVASFVTVLIQSTSFGTSIAEALRVYAGEMRDKRVMRAEEKA 286
Query: 292 ASLGPKLTVPMIIFFLPVLILVIIGPAILSIID 324
L K+T+ ++ +P L+++++GP+++ I +
Sbjct: 287 NKLPTKMTLATMMLTVPPLLIILVGPSVVGITE 319
>gi|85705157|ref|ZP_01036257.1| type II/IV secretion system protein, TadC subfamily protein
[Roseovarius sp. 217]
gi|85670479|gb|EAQ25340.1| type II/IV secretion system protein, TadC subfamily protein
[Roseovarius sp. 217]
Length = 325
Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 67/223 (30%), Positives = 125/223 (56%)
Query: 101 KLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVG 160
KL AG+R ++ + + I LILG+I+ + E Q + ++ +G
Sbjct: 95 KLMQAGYRHRDAVRYFHFAQFALGIGLLILGVIYYVLFKSGTETSTQETLMYILGPAGIG 154
Query: 161 FCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSE 220
+ P WI+ QKRQ I+ +PD+LD++L+C+E+G S+DQ++ RVA ++ L+E
Sbjct: 155 YMMPKYWITKRQQKRQEEIQDGFPDSLDMMLVCIEAGQSMDQSIIRVASEMRASYPALAE 214
Query: 221 EMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETR 280
E + ++ ++ R + + + ++QS +GTSIG++LRV +E R
Sbjct: 215 EFEIVSLQIKAGRDKPSVLNEMAERCGVQDITSFVTVMVQSQTFGTSIGEALRVYAAEMR 274
Query: 281 SERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSII 323
+R+M AE+KA L K+T+ ++ +P L+++++GP++L I+
Sbjct: 275 DKRVMRAEEKANKLPTKMTLATMMLTVPPLLIILVGPSVLGIM 317
>gi|167579124|ref|ZP_02371998.1| type II secretion system protein [Burkholderia thailandensis TXDOH]
Length = 319
Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 80/233 (34%), Positives = 134/233 (57%), Gaps = 4/233 (1%)
Query: 96 ENIVNKLR--AAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAV 153
EN +LR AG+RS + ++ + V+ + + ++FG + + P+ + +
Sbjct: 82 ENSPLRLRLINAGWRSPSAAHLYFAAKTVLALALPAAAMPFLFG-TAIADSPYSVS-AML 139
Query: 154 ILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGG 213
+LIG GF P+ ++ + RQ I +PDALDLL +CVE+G+ +D AL +VA+++
Sbjct: 140 VLIGAFGFYLPNAMLARRIASRQRMIIEDFPDALDLLTVCVEAGLGLDAALTKVADELRL 199
Query: 214 QSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLR 273
+S +++E+ L + E+ ++ A N RT + V + LIQ+DR+GTSIG SLR
Sbjct: 200 RSPVVADELGLMLLEMRSGFTKEAALRNLALRTGAEDVDAFSAMLIQADRFGTSIGASLR 259
Query: 274 VLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
VL R++R M AE++AA + KL P+I P L+ V++GPA + I T+
Sbjct: 260 VLSDTLRTQRRMRAEERAAKIALKLLFPLIFCIFPALLTVLLGPAFIHIYRTL 312
>gi|253996761|ref|YP_003048825.1| type II secretion system protein [Methylotenera mobilis JLW8]
gi|253983440|gb|ACT48298.1| type II secretion system protein [Methylotenera mobilis JLW8]
Length = 312
Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 68/170 (40%), Positives = 107/170 (62%)
Query: 153 VILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIG 212
+IL+ +G+ P+ +S+ + R+ I ++PDALDL+++CVESG+ +D AL RV E++
Sbjct: 132 LILLAAIGYFLPNAVLSHRIDSRKREIFESFPDALDLIIVCVESGLGLDAALARVGEEMH 191
Query: 213 GQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSL 272
+S L EE+ L EL +R+ A N RT ++ V L+QSDR+GT+I DSL
Sbjct: 192 VRSPTLGEELHLINLELRAGSSRERALRNLALRTGVEEVDTLVAMLVQSDRFGTNISDSL 251
Query: 273 RVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
RV R++R + AE+ AA + KL P+I F P ++LV++GPA ++I
Sbjct: 252 RVHADSLRTKRRLLAEEAAAKIAVKLLFPLIFFIFPSMLLVLLGPAFINI 301
>gi|283779212|ref|YP_003369967.1| type II secretion system protein [Pirellula staleyi DSM 6068]
gi|283437665|gb|ADB16107.1| type II secretion system protein [Pirellula staleyi DSM 6068]
Length = 329
Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 100/329 (30%), Positives = 167/329 (50%), Gaps = 18/329 (5%)
Query: 6 FDLFDATELAVAITTAVSIFSLIYAVV-----IPSLGSGELEKRMKSVAVEREILRKQQI 60
F F A+ I +++F LI A+V S + E+R++ + I RK++
Sbjct: 3 FTTFFASLQLSPIMVQIAVFGLIAALVWVAVDFFSARNSRAEQRLEDY--KDPIARKRRE 60
Query: 61 TSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVR 120
+ +K + + R ++ S K L K N+ KL AGFR E + I L +
Sbjct: 61 EAAKKGGSDAMTRMLEAAS-PALAKPLQPKTAKEATNLKMKLSYAGFRGEGAPQIFLGAK 119
Query: 121 LVVPIIFLILG---IIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQS 177
V II L LG + I G Q + V+LI F P + L +KR+
Sbjct: 120 FVCLIIGLFLGGGTTVAIMGLS-------QGALMRVVLIAGGMFYFPDGIVWWLGRKRKE 172
Query: 178 SIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQV 237
SI PDALDL+++CVE+G+ +DQA+R+V+E++ ++EE L +L R
Sbjct: 173 SIFLGLPDALDLMVVCVEAGLGLDQAMRKVSEEMRKSYRVIAEEFSLCNLQLQMGRGRTQ 232
Query: 238 AFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPK 297
+ +R+ +D +++ + LIQ+D++G+SI +LRV R+ R AE+KAA K
Sbjct: 233 VLQELGSRSGVDDLKSLSSILIQADKFGSSIAQALRVQSDAMRTRRRQIAEEKAAKTAVK 292
Query: 298 LTVPMIIFFLPVLILVIIGPAILSIIDTM 326
L P+++F P + +V++GPA ++++ M
Sbjct: 293 LIFPLVLFIFPGIFVVLVGPAAITMVREM 321
>gi|330811031|ref|YP_004355493.1| type II secretion system protein; membrane protein [Pseudomonas
brassicacearum subsp. brassicacearum NFM421]
gi|327379139|gb|AEA70489.1| putative type II secretion system protein; putative membrane
protein [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
Length = 321
Score = 130 bits (327), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 70/221 (31%), Positives = 126/221 (57%), Gaps = 4/221 (1%)
Query: 102 LRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGF 161
L AG+RS ++ + VRL++P++ + + ++ + +++ + + AV L+ +G+
Sbjct: 98 LTHAGYRSASAVQMYWAVRLMLPLLMVGVALLLL----PMVKVSVAIGLLAVTLVAGIGW 153
Query: 162 CAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEE 221
P++++ Q RQ ++ A+PDALDL+++CVESG+++ + RVAE++ V L+EE
Sbjct: 154 LLPAIYVGKRKQARQGRLRAAFPDALDLMVVCVESGLALPTTIERVAEEMSVSQVELAEE 213
Query: 222 MLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRS 281
+ L A++ A + RT ++ ++ L QS R+GTS+ D+LR+ E R
Sbjct: 214 LALVNAQIRAGITSTEALKQLAVRTGLEDIQGLVSLLAQSIRFGTSVADTLRIYADEFRD 273
Query: 282 ERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
R AE+ A +G KL P+I P LV IGPA++ +
Sbjct: 274 RRTQAAEEMGAKIGTKLIFPLIFCLWPSFFLVAIGPAMIGV 314
>gi|187919329|ref|YP_001888360.1| type II secretion system protein [Burkholderia phytofirmans PsJN]
gi|187717767|gb|ACD18990.1| type II secretion system protein [Burkholderia phytofirmans PsJN]
Length = 318
Score = 130 bits (327), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 65/171 (38%), Positives = 104/171 (60%)
Query: 153 VILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIG 212
V+ +GF P+V + LV+ RQ + PDALDL+ +CVE+G+ +D A+ RV ++IG
Sbjct: 135 VLAASALGFYLPNVVMRRLVESRQRKLFEDLPDALDLMTVCVEAGLGLDAAMLRVTQEIG 194
Query: 213 GQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSL 272
+S L +E + + EL R+ A N RT ++ + LIQ+DR+GTS+GDSL
Sbjct: 195 VKSHALKDEFDMVLLELRAGSGREKALRNLSLRTGVEDIDTLAAMLIQADRFGTSVGDSL 254
Query: 273 RVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSII 323
RV R++R + AE++AA + KL P++ F P L+ V++GP+ + I+
Sbjct: 255 RVYTDNLRTKRRLRAEEQAAKIALKLLFPLMFFIFPTLLAVLVGPSAIQIV 305
>gi|116620536|ref|YP_822692.1| type II secretion system protein [Candidatus Solibacter usitatus
Ellin6076]
gi|116223698|gb|ABJ82407.1| type II secretion system protein [Candidatus Solibacter usitatus
Ellin6076]
Length = 315
Score = 130 bits (326), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 80/220 (36%), Positives = 123/220 (55%), Gaps = 8/220 (3%)
Query: 105 AGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYP-FQLR-VGAVILIGYVGFC 162
AGFR E +L + VR++ + LIL ++ ++ P QL +G+ I G++
Sbjct: 90 AGFRGENALAVFYGVRILTTLGMLILCVMM---EARMPPNPVMQLGLMGSGICAGWI--- 143
Query: 163 APSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEM 222
P ++ V KRQ +++ + PDALDLL++ +E+G+ +DQA++ VA ++ LS+EM
Sbjct: 144 LPRFFLEKRVAKRQETLRLSLPDALDLLVVSIEAGLGLDQAIQHVARELYASHPQLSDEM 203
Query: 223 LLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSE 282
L E+ R A NF RT R LIQ+DR+GTS+G+SLR R+
Sbjct: 204 QLVTLEMRAGKRRSEALRNFAERTGEAEFRKLVAILIQNDRFGTSMGESLRTHSDFLRTR 263
Query: 283 RLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
R EAE++A +G KL P+ F LP +++V GP IL I
Sbjct: 264 RRQEAEERAGKVGVKLVFPIFFFILPSMLVVAAGPGILQI 303
>gi|118581108|ref|YP_902358.1| type II secretion system protein [Pelobacter propionicus DSM 2379]
gi|118503818|gb|ABL00301.1| type II secretion system protein [Pelobacter propionicus DSM 2379]
Length = 302
Score = 130 bits (326), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 101/319 (31%), Positives = 156/319 (48%), Gaps = 32/319 (10%)
Query: 14 LAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLR 73
L+VA+ +++++ L+ GEL++R++ + E KQ T+ +D R+
Sbjct: 11 LSVAMVVSLALYPLLTK-------KGELQERLEKMMPE-----KQASTTFSEDKPWWRIT 58
Query: 74 TRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGII 133
D + K K L AAGFR E SL + L +L + LIL I
Sbjct: 59 IEDLGAKLPVAAKEQTK-------YTRMLVAAGFRKE-SLYLFLGSKLALA---LILPGI 107
Query: 134 WIFGY----DKLLE-YPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
+IF Y L+E P G I GF PS W+ V R++ I PD LD
Sbjct: 108 YIFTYALPKGVLMEPEPLLYTTGLAI----AGFLLPSGWLMYKVNNRKTEIFHTLPDILD 163
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
LL + VE+G+ ID AL R E + PL+EE+ + E+ R A + RT +
Sbjct: 164 LLTVSVEAGLGIDAALNRACESPQFKGNPLAEELKIAAREIRAGKPRGDALRDMAERTDV 223
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP 308
+ VR L+Q++R+GTS+ +LRV R++R AE++AA K+ P+I+F P
Sbjct: 224 EDVRAFVTMLVQTERFGTSLSLALRVHSDSLRTKRRQIAEERAAKTAIKILFPLILFIFP 283
Query: 309 VLILVIIGPAILSIIDTMK 327
L++++IGPA ++D K
Sbjct: 284 ALMIILIGPAFFKLMDIFK 302
>gi|217978831|ref|YP_002362978.1| type II secretion system protein [Methylocella silvestris BL2]
gi|217504207|gb|ACK51616.1| type II secretion system protein [Methylocella silvestris BL2]
Length = 320
Score = 129 bits (325), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 62/170 (36%), Positives = 111/170 (65%)
Query: 159 VGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPL 218
VG+ P+++I+ V++R + PDAL+LL++CVE+G+S++ AL+RVA+++ L
Sbjct: 148 VGWILPAIFIAFGVRRRTKAAAAGLPDALELLVVCVEAGLSLEDALQRVAQELKNSQPAL 207
Query: 219 SEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSE 278
++E+ LT AE++ LP+R+ A N +R + V++ + QS RYGT + SLRV +E
Sbjct: 208 ADELTLTWAEINILPSREQALANLADRVNVPTVKSMVSMISQSMRYGTPLAQSLRVGATE 267
Query: 279 TRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMKD 328
R++++ E++A L +T+P+++F +P L L++ GPA L +ID +
Sbjct: 268 MRNDQMTLLEERANRLPALMTIPVMLFIMPTLFLIVGGPAALRLIDMFRS 317
>gi|167840869|ref|ZP_02467553.1| hypothetical protein Bpse38_29619 [Burkholderia thailandensis
MSMB43]
Length = 279
Score = 129 bits (325), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 82/233 (35%), Positives = 133/233 (57%), Gaps = 4/233 (1%)
Query: 96 ENIVNKLR--AAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAV 153
EN +LR AG+RS + ++ + V+ + + + ++ G L + P+ + V
Sbjct: 42 ENSPLRLRLINAGWRSPGAAHLYFAAKTVLALTLPAVAMPFMIG-TALGDNPYAVSA-MV 99
Query: 154 ILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGG 213
+LIG GF P+ +S ++ RQ I +PDALDLL +CVE+G+ +D AL +VA+++
Sbjct: 100 LLIGGFGFYLPNAMLSRHIRLRQRKIIEDFPDALDLLTVCVEAGLGLDAALTKVADELRL 159
Query: 214 QSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLR 273
+S +++E+ L + E+ + A N RT + V LIQ+DR+GTSIG SLR
Sbjct: 160 RSPIVADELGLMLLEIRSGFAKDAALRNLALRTGAEDVDAFCAMLIQADRFGTSIGASLR 219
Query: 274 VLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
VL R++R M AE++AA + KL P+I P L+ V++GPA + I T+
Sbjct: 220 VLSDTLRTQRRMRAEERAAKIALKLLFPLIFCIFPALLTVLLGPAFIHIYRTL 272
>gi|113866736|ref|YP_725225.1| flp pilus assembly protein TadC [Ralstonia eutropha H16]
gi|113525512|emb|CAJ91857.1| flp pilus assembly protein TadC [Ralstonia eutropha H16]
Length = 324
Score = 129 bits (324), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 75/218 (34%), Positives = 129/218 (59%), Gaps = 2/218 (0%)
Query: 105 AGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAP 164
AG+R+ + + + V+ I ++G++ G L + + AV+ G +G+ P
Sbjct: 96 AGWRNASAAPLYFAAKTVLAIALPMIGLLAAAGQPGLQDRNIMFALLAVL--GAIGYYLP 153
Query: 165 SVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLL 224
+V ++ V +RQ ++ +PD +DLL +CVE+G+ +D AL RVA+++ + L++E+ L
Sbjct: 154 NVVLARKVAQRQRTVFEEFPDVIDLLTVCVEAGLGLDAALMRVADELALRCPVLADELQL 213
Query: 225 TIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERL 284
+ EL +++ A N RT ++ V LIQ+DR+GTS+G+SLRVL R++R
Sbjct: 214 MLLELRSGFSKEKALSNLSLRTGVEDVDKFASMLIQADRFGTSLGESLRVLSDMLRTKRR 273
Query: 285 MEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
M AE++AA + KL P+I P L+LV++GPA + I
Sbjct: 274 MRAEEQAAKIALKLLFPLIFTIFPSLLLVLLGPAFIQI 311
>gi|225872758|ref|YP_002754215.1| type II secretion system protein [Acidobacterium capsulatum ATCC
51196]
gi|225793390|gb|ACO33480.1| type II secretion system protein [Acidobacterium capsulatum ATCC
51196]
Length = 299
Score = 129 bits (323), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 74/247 (29%), Positives = 134/247 (54%), Gaps = 12/247 (4%)
Query: 77 SKSLRNFVKKLNLKAILVD-ENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWI 135
KS+ + +K L + +V+ + + ++ AAG R + + L RL+ P++ +++G
Sbjct: 55 GKSMLHAMKGLRVTLGMVENQKLRDRFMAAGMRKPEHMELYLGARLLAPLLGVLIGTF-- 112
Query: 136 FGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVE 195
+P + AV L G G+ P W+ V+ R+ I R+ PDA+DLL+ICV+
Sbjct: 113 --------FPSNTFLWAVALAG-AGYLGPDFWLERKVKGRRHRISRSMPDAIDLLVICVD 163
Query: 196 SGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNAT 255
+G+ +DQA+ RV +++ ++EE L E R A++ F RT++ ++N
Sbjct: 164 AGLGLDQAMLRVGQELAVSHPEINEEFLQINREQRAGRPRVDAWKGFAERTRLPEIQNFV 223
Query: 256 QALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVII 315
L+Q++R+GT I +L R +R AE+KAA K+ P+++F P + +V++
Sbjct: 224 SMLVQTERFGTPITRALNTFSDSMRLKRKQIAEEKAAKTTVKMLFPLVLFIFPCIFIVLL 283
Query: 316 GPAILSI 322
GPA ++I
Sbjct: 284 GPAFITI 290
>gi|126733578|ref|ZP_01749325.1| Putative Flp pilus assembly protein TadC [Roseobacter sp. CCS2]
gi|126716444|gb|EBA13308.1| Putative Flp pilus assembly protein TadC [Roseobacter sp. CCS2]
Length = 321
Score = 129 bits (323), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 71/227 (31%), Positives = 131/227 (57%), Gaps = 1/227 (0%)
Query: 101 KLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIW-IFGYDKLLEYPFQLRVGAVILIGYV 159
KL AG+RS ++ I ++ + I L+ G + + +E Q V +++ G
Sbjct: 94 KLLQAGYRSTNAVRIYNFMQFALGIFGLLCGGAYSLIQMSGTVEVTTQQLVMWIMIPGGA 153
Query: 160 GFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLS 219
G+ P W++ Q RQ +I+ A+PD+LD++L+CVE+G S+DQ++ RVA ++ L+
Sbjct: 154 GYLLPKYWVTRRQQMRQEAIENAFPDSLDMMLVCVEAGQSLDQSIIRVARELKSGFPELA 213
Query: 220 EEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSET 279
EE + E ++ ++ +R + + + L+QS ++GTSI D+LRV +E
Sbjct: 214 EEFEIVSQEAKAGKDKNTVLKDMSDRCGVPDIASFVTVLVQSSQFGTSIADALRVYSAEM 273
Query: 280 RSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
R +R+M AE+KA L K+T+ ++ +P L+ ++IGP+I +I+ ++
Sbjct: 274 RDKRVMRAEEKANKLPTKMTLATMMLTVPPLMAMLIGPSIYAIVTSL 320
>gi|254486075|ref|ZP_05099280.1| type II/IV secretion system protein, TadC subfamily [Roseobacter
sp. GAI101]
gi|214042944|gb|EEB83582.1| type II/IV secretion system protein, TadC subfamily [Roseobacter
sp. GAI101]
Length = 308
Score = 129 bits (323), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 78/269 (28%), Positives = 144/269 (53%), Gaps = 5/269 (1%)
Query: 57 KQQITSLQKDSASSRLRTRD-SKSLRNFVKKLNLKAILVDENIVNKL--RAAGFRSEYSL 113
K+ T + + RLR D ++ L+ F K L + + DE +L R AG+ S ++
Sbjct: 37 KRSQTEPSERPSQQRLRQSDRNEQLQKFAKFLEPENL--DELTAKQLMLRQAGYSSRDAV 94
Query: 114 NILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQ 173
++ + I L+ GI+++ Q + + G +G+ P W++ V+
Sbjct: 95 RFFHFAQMALGIGGLVFGIVYVNFLGGGEGLTTQKMMMYTVGPGGIGYYLPKYWVTKRVE 154
Query: 174 KRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLP 233
KR+ I R +PDALD++L+CVE+G S+DQ++ RVA+++ L+EE + E+
Sbjct: 155 KRKEEITRGFPDALDMMLVCVEAGQSLDQSIVRVAKELHASYPALAEEFEVVAYEMKAGK 214
Query: 234 NRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAAS 293
++ + +R + V + L QS +GTSI D+LRV E R +R+M AE+ A
Sbjct: 215 DKVGVLTDMGDRCGVQDVSSFVTVLCQSAAFGTSISDALRVYAEEMRDKRVMRAEEAANK 274
Query: 294 LGPKLTVPMIIFFLPVLILVIIGPAILSI 322
L K+T+ ++ +P L+++++ P++++I
Sbjct: 275 LPTKMTLATMMLTVPPLLIILVAPSVMNI 303
>gi|194335919|ref|YP_002017713.1| type II secretion system protein [Pelodictyon phaeoclathratiforme
BU-1]
gi|194308396|gb|ACF43096.1| type II secretion system protein [Pelodictyon phaeoclathratiforme
BU-1]
Length = 316
Score = 128 bits (322), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 86/308 (27%), Positives = 165/308 (53%), Gaps = 11/308 (3%)
Query: 18 ITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDS 77
+ + ++ SL++A++ + + L+KR+ + + R TSL K + + ++ T
Sbjct: 11 VLSGAAVASLVFALLNWLVDNNALKKRLTKIIRQS---RAPAATSLSKTANTGKVAT--- 64
Query: 78 KSLRNFVKKLNLKAILVDENIVN-KLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIF 136
+ N + KL+L + V K AG R++ + V+ + ++ ++ +++
Sbjct: 65 --VINILSKLSLPEEGWQSSGVQIKFLQAGIRNKNAPQNFFAVKTLFTLVLPVVLALFLH 122
Query: 137 GYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVES 196
L+ P + V+ G+ P + + + Q R ++ + PD LDL+++C ES
Sbjct: 123 FTQPLM--PLARVMILVLFTAAAGYYLPEMLLRFITQNRIERMRNSLPDMLDLMVVCTES 180
Query: 197 GISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQ 256
G+ ID A+ R++ ++ + L+EE L+ E+ NR A N R+++D ++N
Sbjct: 181 GMGIDAAIARISREMVRTNPDLAEEFYLSTLEMRAGANRIDALRNLALRSRLDDLQNLVS 240
Query: 257 ALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIG 316
L+Q+DR+GTS+ DSLRV R+ R AE+ AA + K+T+P+++F PVL+LV++G
Sbjct: 241 VLVQADRFGTSLVDSLRVHSDMMRTCRTQRAEELAAKIPVKMTLPLVLFIFPVLMLVLLG 300
Query: 317 PAILSIID 324
PAI+ +I
Sbjct: 301 PAIIQVIQ 308
>gi|114764951|ref|ZP_01444124.1| Putative Flp pilus assembly protein TadC [Pelagibaca bermudensis
HTCC2601]
gi|114542663|gb|EAU45687.1| Putative Flp pilus assembly protein TadC [Roseovarius sp. HTCC2601]
Length = 323
Score = 128 bits (321), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 72/248 (29%), Positives = 142/248 (57%)
Query: 75 RDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIW 134
R + L + + L K+ + KL AG+R+ ++ + + ++V+ + L+ G+ +
Sbjct: 68 RKNAKLNKYAQYLEPKSAEELGEVRMKLLQAGYRTRDAVRLYYLAQMVLGLGLLVAGLTY 127
Query: 135 IFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICV 194
+ E Q ++ +IL G +G+ AP WI+ V++R+ I+ +PDALD++L+CV
Sbjct: 128 YLMFIDGPESTMQQKLMYIILPGALGYLAPKYWITKRVEERKKQIEEGFPDALDMMLVCV 187
Query: 195 ESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNA 254
E+G S+DQ++ RV+++I L++E + E+ ++ + R + V +
Sbjct: 188 EAGQSLDQSIVRVSKEIRASYAALADEFEIISHEMKAGKDKASVLNDMGERCGVADVSSF 247
Query: 255 TQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVI 314
L Q+ +GTSI D+LR+ SE R +R+M AE+KA L K+T+ ++ +P L++++
Sbjct: 248 VTVLNQASTFGTSIADALRIYASEMRDKRVMRAEEKANKLPTKMTLTTMMLTVPPLLIIL 307
Query: 315 IGPAILSI 322
+GP++++I
Sbjct: 308 VGPSVVNI 315
>gi|85859132|ref|YP_461334.1| flp pilus assembly protein [Syntrophus aciditrophicus SB]
gi|85722223|gb|ABC77166.1| flp pilus assembly protein [Syntrophus aciditrophicus SB]
Length = 317
Score = 128 bits (321), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 68/171 (39%), Positives = 104/171 (60%)
Query: 156 IGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQS 215
+ VGF P++W+ + R+ I +PDALDL++ICVE+G+ +DQA+ RV E++
Sbjct: 144 LALVGFYLPNLWLRLKIGARKEKIMEGFPDALDLMVICVEAGMGLDQAINRVGEEMKLSC 203
Query: 216 VPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVL 275
P+S+E E+ +R+ A N NRT++D V + LIQ+D++GTSIG +LRV
Sbjct: 204 PPISDEFRTLNMEMRMGKSRREALRNMANRTELDDVTSLVTLLIQTDQFGTSIGQALRVH 263
Query: 276 VSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
R +R AE+KAA L KL P+I F P L +VI+GPA++ + +
Sbjct: 264 SDSMRVQRRQRAEEKAAKLPLKLLFPLIFFIFPSLFVVIMGPAMIQVFHAL 314
>gi|167617239|ref|ZP_02385870.1| type II secretion system protein [Burkholderia thailandensis Bt4]
gi|257141112|ref|ZP_05589374.1| type II secretion system protein [Burkholderia thailandensis E264]
Length = 319
Score = 128 bits (321), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 79/233 (33%), Positives = 133/233 (57%), Gaps = 4/233 (1%)
Query: 96 ENIVNKLR--AAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAV 153
EN +LR AG+RS + ++ + V+ + + ++ G + + P+ + +
Sbjct: 82 ENSPLRLRLINAGWRSPSAAHLYFAAKTVLALALPAAAMPFLIG-TAIADSPYSVS-AML 139
Query: 154 ILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGG 213
+LIG GF P+ ++ + RQ I +PDALDLL +CVE+G+ +D AL +VA+++
Sbjct: 140 VLIGAFGFYLPNAMLARRIASRQRMIIEDFPDALDLLTVCVEAGLGLDAALTKVADELRL 199
Query: 214 QSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLR 273
+S +++E+ L + E+ ++ A N RT + V + LIQ+DR+GTSIG SLR
Sbjct: 200 RSPVVADELGLMLLEMRSGFTKEAALRNLALRTGAEDVDAFSAMLIQADRFGTSIGASLR 259
Query: 274 VLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
VL R++R M AE++AA + KL P+I P L+ V++GPA + I T+
Sbjct: 260 VLSDTLRTQRRMRAEERAAKIALKLLFPLIFCIFPALLTVLLGPAFIHIYRTL 312
>gi|296156494|ref|ZP_06839332.1| Type II secretion system F domain protein [Burkholderia sp. Ch1-1]
gi|295893093|gb|EFG72873.1| Type II secretion system F domain protein [Burkholderia sp. Ch1-1]
Length = 318
Score = 128 bits (321), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 64/171 (37%), Positives = 103/171 (60%)
Query: 153 VILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIG 212
V+ +GF P++ ++ LV+ RQ + PDALDL+ +CVE+G+ +D A+ RV ++IG
Sbjct: 135 VLAASALGFYLPNLVMTRLVESRQRKLFEDLPDALDLMTVCVEAGLGLDAAMMRVTQEIG 194
Query: 213 GQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSL 272
+S L +E + + EL R A N RT ++ + LIQ+DR+GTS+GDSL
Sbjct: 195 VKSHALKDEFDMVLLELRAGSGRDKALRNLSLRTGVEDIDTLAAMLIQADRFGTSVGDSL 254
Query: 273 RVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSII 323
RV R++R + AE+ AA + KL P++ F P L+ V++GP+ + I+
Sbjct: 255 RVYTDNLRTKRRLRAEELAAEIALKLLFPLMFFIFPTLLAVLVGPSAIQIV 305
>gi|163738365|ref|ZP_02145780.1| type II secretion system protein [Phaeobacter gallaeciensis BS107]
gi|163742218|ref|ZP_02149606.1| type II/IV secretion system protein, TadC subfamily [Phaeobacter
gallaeciensis 2.10]
gi|161384548|gb|EDQ08929.1| type II/IV secretion system protein, TadC subfamily [Phaeobacter
gallaeciensis 2.10]
gi|161388286|gb|EDQ12640.1| type II secretion system protein [Phaeobacter gallaeciensis BS107]
Length = 326
Score = 128 bits (321), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 80/271 (29%), Positives = 143/271 (52%), Gaps = 1/271 (0%)
Query: 55 LRKQQITSLQKDSASSRLRTRD-SKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSL 113
L+K S Q RLR D ++ L+ F L + + KLR AG++S+ S+
Sbjct: 50 LQKSMSASTQTKPKKERLRQADRNEQLQKFASFLEPQDAAELSKMELKLRQAGYQSKDSV 109
Query: 114 NILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQ 173
+ + +I L LG+ +++ + +EY Q V +I G + P WI+ ++
Sbjct: 110 RFFHFAQFALGLIGLALGLFYVYVLNADMEYDSQQMVIRIIGPGAAAYMLPKYWITRRIE 169
Query: 174 KRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLP 233
+R+ I +PDALD++L+CVE+G S+DQA+ RVA+++ L++E + E+
Sbjct: 170 ERKQEITSGFPDALDMMLVCVEAGQSLDQAIVRVAKELHASYPALADEFDIVAQEMKAGK 229
Query: 234 NRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAAS 293
++ + R + V + +IQS +GTSI ++LRV E R +R+M AE+ A
Sbjct: 230 DKDKVMRDMGTRCGVQDVSSFVTVMIQSATFGTSIAEALRVYAGEMRDKRVMRAEEAANK 289
Query: 294 LGPKLTVPMIIFFLPVLILVIIGPAILSIID 324
L K+T+ + +P L+++++GP+ I +
Sbjct: 290 LPTKMTLATMTLTVPPLLIILVGPSAQGIAN 320
>gi|115358176|ref|YP_775314.1| type II secretion system protein [Burkholderia ambifaria AMMD]
gi|115283464|gb|ABI88980.1| type II secretion system protein [Burkholderia ambifaria AMMD]
Length = 314
Score = 127 bits (320), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 74/227 (32%), Positives = 128/227 (56%), Gaps = 1/227 (0%)
Query: 101 KLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVG 160
+L AGFR +++ ++ ++L ++F I++ +L E+ F +R A++ +G
Sbjct: 89 QLTRAGFRERRAVSAMIGIKLSCGVLFAGFAIVFSPYIPRLGEF-FVIRAVAMVGAFVIG 147
Query: 161 FCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSE 220
P + ++++R+ +I +PDALDLL+IC +G S+ +RRVA ++ PL++
Sbjct: 148 VIVPEYVLGAMIRRRRRTIAACFPDALDLLVICTMAGNSLASGVRRVARELQRICPPLAD 207
Query: 221 EMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETR 280
E+ + EL+ N A +F R R+ L QS R+GT I +LR L R
Sbjct: 208 ELTVCADELTLSGNVSEALAHFALRVNFSSARSLATTLTQSQRFGTPITQALRTLSRSER 267
Query: 281 SERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
+E+++ E+KAA L PK+TVPM++F LP + L+ GPA + +I+ K
Sbjct: 268 TEQVVALEEKAAKLAPKITVPMMLFILPTVGLIAAGPAAIRLIEVFK 314
>gi|83718164|ref|YP_440464.1| hypothetical protein BTH_II2276 [Burkholderia thailandensis E264]
gi|83651989|gb|ABC36053.1| membrane protein, putative [Burkholderia thailandensis E264]
Length = 296
Score = 127 bits (320), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 79/233 (33%), Positives = 133/233 (57%), Gaps = 4/233 (1%)
Query: 96 ENIVNKLR--AAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAV 153
EN +LR AG+RS + ++ + V+ + + ++ G + + P+ + +
Sbjct: 59 ENSPLRLRLINAGWRSPSAAHLYFAAKTVLALALPAAAMPFLIG-TAIADSPYSVS-AML 116
Query: 154 ILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGG 213
+LIG GF P+ ++ + RQ I +PDALDLL +CVE+G+ +D AL +VA+++
Sbjct: 117 VLIGAFGFYLPNAMLARRIASRQRMIIEDFPDALDLLTVCVEAGLGLDAALTKVADELRL 176
Query: 214 QSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLR 273
+S +++E+ L + E+ ++ A N RT + V + LIQ+DR+GTSIG SLR
Sbjct: 177 RSPVVADELGLMLLEMRSGFTKEAALRNLALRTGAEDVDAFSAMLIQADRFGTSIGASLR 236
Query: 274 VLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
VL R++R M AE++AA + KL P+I P L+ V++GPA + I T+
Sbjct: 237 VLSDTLRTQRRMRAEERAAKIALKLLFPLIFCIFPALLTVLLGPAFIHIYRTL 289
>gi|116748937|ref|YP_845624.1| type II secretion system protein [Syntrophobacter fumaroxidans
MPOB]
gi|116698001|gb|ABK17189.1| type II secretion system protein [Syntrophobacter fumaroxidans
MPOB]
Length = 319
Score = 127 bits (320), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 66/174 (37%), Positives = 103/174 (59%)
Query: 152 AVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDI 211
A VGF P +W+ +R+ ++R PDALDL+++CVE+G+ ID A RV+E++
Sbjct: 143 AACATALVGFYLPDLWLRLKTSRRRKQLRRGLPDALDLMVVCVEAGMGIDSATYRVSEEM 202
Query: 212 GGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDS 271
+ P+S+E+ EL R+ A N RT ++ V + T LIQ+D++GTS+ +
Sbjct: 203 KLTNAPMSDELKYLNLELRAGKARRDALRNLALRTDLEDVNSLTTLLIQTDKFGTSVAQA 262
Query: 272 LRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDT 325
LRV R++R AE+ AA L KL +P+I+F P L +VI+GPA++ T
Sbjct: 263 LRVHSDSFRTKRHQMAEELAAKLPVKLVLPLILFIFPSLFVVIMGPAMIRAFRT 316
>gi|254441173|ref|ZP_05054666.1| Bacterial type II secretion system protein F domain [Octadecabacter
antarcticus 307]
gi|198251251|gb|EDY75566.1| Bacterial type II secretion system protein F domain [Octadecabacter
antarcticus 307]
Length = 326
Score = 127 bits (319), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 66/227 (29%), Positives = 129/227 (56%)
Query: 101 KLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVG 160
KL AG+R++ ++ + ++ I+ L+ GI + + + +++ G G
Sbjct: 96 KLIQAGYRTKSAVKTYHFTQFMLGIVLLVGGITYAIYNSATGDPTTNATIMSILGPGMAG 155
Query: 161 FCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSE 220
+ P W+ +RQ + +PD+LD++L+CVE+G S+DQ++ RVA ++ L+E
Sbjct: 156 YYLPKWWVGKRQAERQLEMINGFPDSLDMMLVCVEAGQSLDQSIIRVAHELKSGFPALAE 215
Query: 221 EMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETR 280
E + E+ ++ + RT + + + LIQS ++GTSI ++LRV +E R
Sbjct: 216 EYQMVSHEMKAGKDKTQVLRDMAERTGVADISSFVTVLIQSQQFGTSIAEALRVFSAEMR 275
Query: 281 SERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
+R+M AE+KA +L K+T+ ++ +P L++++IGP+I +I +T++
Sbjct: 276 DKRVMRAEEKANTLPTKMTLATMLLTVPPLLIILIGPSIYNIYETLQ 322
>gi|126729093|ref|ZP_01744907.1| type II/IV secretion system protein, TadC subfamily [Sagittula
stellata E-37]
gi|126710083|gb|EBA09135.1| type II/IV secretion system protein, TadC subfamily [Sagittula
stellata E-37]
Length = 324
Score = 127 bits (319), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 80/275 (29%), Positives = 147/275 (53%), Gaps = 11/275 (4%)
Query: 55 LRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVD-------ENIVNKLRAAGF 107
L K + TS +K A +R RD + RN +KLN A ++ I KL AG+
Sbjct: 45 LDKLKETSQKKMDAQARAVLRDKR--RN--EKLNKYAQFLEPQDAKELSEIKLKLLQAGY 100
Query: 108 RSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVW 167
R++ ++ + ++ + + L G + + E ++ ++ G VG+ AP W
Sbjct: 101 RTKDAVQVYYFMQFALGLGMLAAGTGYYLFFVNPEEADMTTKLMYILGPGCVGYLAPKYW 160
Query: 168 ISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIA 227
I+ ++KR+ I++ +PDALD++L+CVE+G S++Q++ RVA+++ L++E +
Sbjct: 161 ITKRMEKRKEEIQQGFPDALDMMLVCVEAGQSMEQSIIRVAKELRASYPALADEFEIISH 220
Query: 228 ELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEA 287
E+ +R + R V + L Q+ +GTSI D+LRV E R +R+M A
Sbjct: 221 EMKAGKDRSQVLNDMSERCGSQDVSSFVTVLNQAQTFGTSISDALRVYAGEMRDKRVMRA 280
Query: 288 EKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
E+ A L K+T+ ++ +P L+++++GP+ + I
Sbjct: 281 EEAANKLPTKMTLTTMMLTVPPLLIILVGPSAVGI 315
>gi|84687272|ref|ZP_01015152.1| type II/IV secretion system protein, TadC subfamily protein
[Maritimibacter alkaliphilus HTCC2654]
gi|84664705|gb|EAQ11189.1| type II/IV secretion system protein, TadC subfamily protein
[Rhodobacterales bacterium HTCC2654]
Length = 324
Score = 127 bits (318), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 65/186 (34%), Positives = 111/186 (59%)
Query: 143 EYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQ 202
E Q + V++ G VG+ AP W++ V R+ I +PDALD++L+CVE+G S+DQ
Sbjct: 136 ETSTQKMIMTVLIPGAVGYVAPKYWVTRRVDSRKEEITNGFPDALDMMLVCVEAGQSLDQ 195
Query: 203 ALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSD 262
A+ RVA++I L++E + E+ +R + R + V++ LIQS
Sbjct: 196 AIIRVAKEIRAGYPALADEFEIVSWEIKAGKDRIQVLRDMGERCGVADVQSFVTVLIQST 255
Query: 263 RYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
+GTSI ++LRV E R +R+M AE+KA +L K+T+ ++ +P L++++IGP++ +
Sbjct: 256 SFGTSIAEALRVYAGEMRDKRVMRAEEKANTLPTKMTLATMMLTVPPLLIILIGPSVYEV 315
Query: 323 IDTMKD 328
T+K+
Sbjct: 316 YKTLKN 321
>gi|89053483|ref|YP_508934.1| type II secretion system protein [Jannaschia sp. CCS1]
gi|88863032|gb|ABD53909.1| type II secretion system protein [Jannaschia sp. CCS1]
Length = 326
Score = 126 bits (317), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 65/170 (38%), Positives = 102/170 (60%)
Query: 153 VILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIG 212
VI+ G VG+ AP WI+ Q R+ I +PDALDL+L+CVE+G S+DQA+ +VA +I
Sbjct: 151 VIVPGVVGYYAPKYWITKRAQTREDQINSGFPDALDLMLVCVEAGQSLDQAIIKVANEIK 210
Query: 213 GQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSL 272
PL+EE + E+ ++ + R + V + LIQS +GTS+ ++L
Sbjct: 211 TSYPPLAEEFEIVSYEMKAGKDKTKVLRDMGERVGIQDVNSFITTLIQSSTFGTSVAEAL 270
Query: 273 RVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
+V E R +R+ AE+KA L KLT+ ++F +P L++++IGP+I I
Sbjct: 271 KVYSDEMRDKRISRAEEKANKLPTKLTLFTMLFCVPPLLVILIGPSIYGI 320
>gi|126443620|ref|YP_001064084.1| type II secretion system protein [Burkholderia pseudomallei 668]
gi|167908138|ref|ZP_02495343.1| type II secretion system protein [Burkholderia pseudomallei NCTC
13177]
gi|126223111|gb|ABN86616.1| type II secretion system protein [Burkholderia pseudomallei 668]
Length = 319
Score = 126 bits (317), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 68/174 (39%), Positives = 107/174 (61%)
Query: 153 VILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIG 212
++LIG GF P+ ++ + RQ I +PDALDLL +CVE+G+ +D AL +VA+++
Sbjct: 139 LVLIGAFGFYLPNAMLARRIAARQRMIVEDFPDALDLLTVCVEAGLGLDAALTKVADELR 198
Query: 213 GQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSL 272
+S +++E+ L + E+ ++ A N RT + V + LIQ+DR+GTSIG SL
Sbjct: 199 LRSPVVADELGLMLLEMRSGFTKETALRNLALRTGAEDVDAFSAMLIQADRFGTSIGASL 258
Query: 273 RVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
RVL R++R M AE++AA + KL P+I P L+ V++GPA + I T+
Sbjct: 259 RVLSDTLRTQRRMRAEERAAKIALKLLFPLIFCIFPALLTVLLGPAFIHIYRTL 312
>gi|242311994|ref|ZP_04811011.1| type II secretion system protein [Burkholderia pseudomallei 1106b]
gi|254265316|ref|ZP_04956181.1| type II secretion system protein [Burkholderia pseudomallei 1710a]
gi|242135233|gb|EES21636.1| type II secretion system protein [Burkholderia pseudomallei 1106b]
gi|254216318|gb|EET05703.1| type II secretion system protein [Burkholderia pseudomallei 1710a]
Length = 313
Score = 126 bits (317), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 68/174 (39%), Positives = 107/174 (61%)
Query: 153 VILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIG 212
++LIG GF P+ ++ + RQ I +PDALDLL +CVE+G+ +D AL +VA+++
Sbjct: 133 LVLIGAFGFYLPNAMLARRIAARQRMIVEDFPDALDLLTVCVEAGLGLDAALTKVADELR 192
Query: 213 GQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSL 272
+S +++E+ L + E+ ++ A N RT + V + LIQ+DR+GTSIG SL
Sbjct: 193 LRSPVVADELGLMLLEMRSGFTKETALRNLALRTGAEDVDAFSTMLIQADRFGTSIGASL 252
Query: 273 RVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
RVL R++R M AE++AA + KL P+I P L+ V++GPA + I T+
Sbjct: 253 RVLSDTLRTQRRMRAEERAAKIALKLLFPLIFCIFPALLTVLLGPAFIHIYRTL 306
>gi|53723215|ref|YP_112200.1| hypothetical protein BPSS2198 [Burkholderia pseudomallei K96243]
gi|76819357|ref|YP_336475.1| type II secretion system protein [Burkholderia pseudomallei 1710b]
gi|126455503|ref|YP_001076997.1| type II secretion system protein [Burkholderia pseudomallei 1106a]
gi|167744183|ref|ZP_02416957.1| type II secretion system protein [Burkholderia pseudomallei 14]
gi|167821382|ref|ZP_02453062.1| type II secretion system protein [Burkholderia pseudomallei 91]
gi|167829724|ref|ZP_02461195.1| type II secretion system protein [Burkholderia pseudomallei 9]
gi|167851191|ref|ZP_02476699.1| type II secretion system protein [Burkholderia pseudomallei B7210]
gi|167899821|ref|ZP_02487222.1| type II secretion system protein [Burkholderia pseudomallei 7894]
gi|167916485|ref|ZP_02503576.1| type II secretion system protein [Burkholderia pseudomallei 112]
gi|167924342|ref|ZP_02511433.1| type II secretion system protein [Burkholderia pseudomallei BCC215]
gi|217424204|ref|ZP_03455703.1| type II secretion system protein [Burkholderia pseudomallei 576]
gi|226194113|ref|ZP_03789713.1| type II secretion system protein [Burkholderia pseudomallei
Pakistan 9]
gi|237510430|ref|ZP_04523145.1| type II secretion system protein [Burkholderia pseudomallei
MSHR346]
gi|254182575|ref|ZP_04889169.1| type II secretion system protein [Burkholderia pseudomallei 1655]
gi|254187127|ref|ZP_04893642.1| type II secretion system protein [Burkholderia pseudomallei Pasteur
52237]
gi|254192523|ref|ZP_04898962.1| type II secretion system protein [Burkholderia pseudomallei S13]
gi|254296491|ref|ZP_04963947.1| type II secretion system protein [Burkholderia pseudomallei 406e]
gi|52213629|emb|CAH39683.1| putative membrane protein [Burkholderia pseudomallei K96243]
gi|76583830|gb|ABA53304.1| Bacterial type II secretion system protein, probably involved in
Flp pilus synthesis [Burkholderia pseudomallei 1710b]
gi|126229271|gb|ABN92684.1| type II secretion system protein [Burkholderia pseudomallei 1106a]
gi|157806389|gb|EDO83559.1| type II secretion system protein [Burkholderia pseudomallei 406e]
gi|157934810|gb|EDO90480.1| type II secretion system protein [Burkholderia pseudomallei Pasteur
52237]
gi|169649281|gb|EDS81974.1| type II secretion system protein [Burkholderia pseudomallei S13]
gi|184213110|gb|EDU10153.1| type II secretion system protein [Burkholderia pseudomallei 1655]
gi|217392669|gb|EEC32692.1| type II secretion system protein [Burkholderia pseudomallei 576]
gi|225933806|gb|EEH29793.1| type II secretion system protein [Burkholderia pseudomallei
Pakistan 9]
gi|235002635|gb|EEP52059.1| type II secretion system protein [Burkholderia pseudomallei
MSHR346]
Length = 319
Score = 126 bits (317), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 68/174 (39%), Positives = 107/174 (61%)
Query: 153 VILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIG 212
++LIG GF P+ ++ + RQ I +PDALDLL +CVE+G+ +D AL +VA+++
Sbjct: 139 LVLIGAFGFYLPNAMLARRIAARQRMIVEDFPDALDLLTVCVEAGLGLDAALTKVADELR 198
Query: 213 GQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSL 272
+S +++E+ L + E+ ++ A N RT + V + LIQ+DR+GTSIG SL
Sbjct: 199 LRSPVVADELGLMLLEMRSGFTKETALRNLALRTGAEDVDAFSTMLIQADRFGTSIGASL 258
Query: 273 RVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
RVL R++R M AE++AA + KL P+I P L+ V++GPA + I T+
Sbjct: 259 RVLSDTLRTQRRMRAEERAAKIALKLLFPLIFCIFPALLTVLLGPAFIHIYRTL 312
>gi|110679391|ref|YP_682398.1| TadC family type II/IV secretion system protein [Roseobacter
denitrificans OCh 114]
gi|109455507|gb|ABG31712.1| type II/IV secretion system protein, TadC subfamily, putative
[Roseobacter denitrificans OCh 114]
Length = 355
Score = 126 bits (317), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 75/275 (27%), Positives = 143/275 (52%), Gaps = 17/275 (6%)
Query: 57 KQQITSLQKDSASSRLRTRD-SKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNI 115
K+QI + + ++ RLR + ++ L+ F L + + LR AG++S+ ++
Sbjct: 79 KRQIQTPETNAPEQRLRQGERNEQLQRFASFLEPQDVAELSARQLMLRQAGYQSQDAVRF 138
Query: 116 LLVVRLVVPIIFLILGIIWI--------FGYDKLLEYPFQLRVGAVILIGYVGFCAPSVW 167
+ + I L+L +++ F K++ Y I+ G VG+ P W
Sbjct: 139 FHFAQFALGIAGLVLAFVYLNLLGHGEGFTTQKMMIY--------TIIPGAVGYYLPVYW 190
Query: 168 ISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIA 227
+ V R+ I R +PD+LD++L+CVE+G S+DQ + RV++++ L++E +
Sbjct: 191 VRRRVDARKDEITRGFPDSLDMMLVCVEAGQSLDQCIVRVSKELHASYPALAQEFDVVAY 250
Query: 228 ELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEA 287
E+ ++ +F R + V + L QS ++GTSI ++LRV E R +R+M A
Sbjct: 251 EMKAGKDKTTVLNDFGERCGVQDVSSFVTVLNQSQQFGTSIAEALRVYAEEMRDKRVMRA 310
Query: 288 EKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
E+ A L K+T+ ++ +P L+++++GP++ I
Sbjct: 311 EEAANKLPTKMTLATMMLTVPPLLIILVGPSVHGI 345
>gi|134281772|ref|ZP_01768479.1| type II secretion system protein [Burkholderia pseudomallei 305]
gi|134246834|gb|EBA46921.1| type II secretion system protein [Burkholderia pseudomallei 305]
Length = 313
Score = 126 bits (316), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 68/174 (39%), Positives = 107/174 (61%)
Query: 153 VILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIG 212
++LIG GF P+ ++ + RQ I +PDALDLL +CVE+G+ +D AL +VA+++
Sbjct: 133 LVLIGAFGFYLPNAMLARRIAARQRMIVEDFPDALDLLTVCVEAGLGLDAALTKVADELR 192
Query: 213 GQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSL 272
+S +++E+ L + E+ ++ A N RT + V + LIQ+DR+GTSIG SL
Sbjct: 193 LRSPVVADELGLMLLEMRSGFTKETALRNLALRTGAEDVDAFSAMLIQADRFGTSIGASL 252
Query: 273 RVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
RVL R++R M AE++AA + KL P+I P L+ V++GPA + I T+
Sbjct: 253 RVLSDTLRTQRRMRAEERAAKIALKLLFPLIFCIFPALLTVLLGPAFIHIYRTL 306
>gi|194288828|ref|YP_002004735.1| tad secretion system, secretion accessory protein [Cupriavidus
taiwanensis LMG 19424]
gi|193222663|emb|CAQ68666.1| Tad secretion system, secretion accessory protein [Cupriavidus
taiwanensis LMG 19424]
Length = 324
Score = 126 bits (316), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 75/218 (34%), Positives = 129/218 (59%), Gaps = 2/218 (0%)
Query: 105 AGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAP 164
AG+RS + + + V+ + +LG++ + + + QL + L+G G+ P
Sbjct: 96 AGWRSASAAPLYFGAKTVLAVALPMLGLLAV--SSQPGQQSQQLMFALLALLGATGYYLP 153
Query: 165 SVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLL 224
+V ++ V +RQ ++ +PD +DLL +CVE+G+ +D AL RVA+++ + L++E+ L
Sbjct: 154 NVVLARKVSQRQRTVFEEFPDVIDLLTVCVEAGLGLDAALMRVADELALRCPVLADELQL 213
Query: 225 TIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERL 284
+ EL +++ A N RT ++ V LIQ+DR+GTS+G+SLRVL R++R
Sbjct: 214 MLLELRSGFSKEKALTNLSLRTGVEDVDKFASMLIQADRFGTSLGESLRVLSDMLRTKRR 273
Query: 285 MEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
M AE++AA + KL P+I P L+LV++GPA + I
Sbjct: 274 MRAEEQAAKIALKLLFPLIFTIFPSLLLVLLGPAFIQI 311
>gi|325108941|ref|YP_004270009.1| type II secretion system F domain protein [Planctomyces
brasiliensis DSM 5305]
gi|324969209|gb|ADY59987.1| Type II secretion system F domain protein [Planctomyces
brasiliensis DSM 5305]
Length = 310
Score = 126 bits (316), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 82/287 (28%), Positives = 154/287 (53%), Gaps = 13/287 (4%)
Query: 41 LEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVN 100
+E+R++ + R+ R+ + +S ++D + L +K+ K L K L + +
Sbjct: 33 VEERLEDI---RDPSRRFKESSAERDGVGNML----NKAAPTLSKALKPKTELEESALKI 85
Query: 101 KLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGY-V 159
++ AGF S + L ++ + I L++G FG+ L+Y ++IG +
Sbjct: 86 RMANAGFNSPNAPQAYLAIKFISMIGGLLVG--SSFGF---LQYGMTQNGWTAVVIGAGL 140
Query: 160 GFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLS 219
GF P + ++ ++ KR+ +I PDALDLL++CVESG+ +DQ + RV ++ + +
Sbjct: 141 GFYLPELILAYVISKRKQAIFLTMPDALDLLVVCVESGLGLDQGMNRVTAELSDTAPEIC 200
Query: 220 EEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSET 279
E L +L NR+ + RT +D ++ LIQ+DR+G+SI +LRV
Sbjct: 201 AEFSLCNFQLQMGRNRREVLHDLGVRTGVDDMKALAAILIQADRFGSSIAQALRVQSDSM 260
Query: 280 RSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
R +R+ AE+KA ++ P+++F P + +V++GPA +S++D++
Sbjct: 261 RVKRMQIAEEKAQKTAVQMIFPLVLFIFPGIFVVLVGPAAISMMDSL 307
>gi|167725257|ref|ZP_02408493.1| type II secretion system protein [Burkholderia pseudomallei DM98]
Length = 275
Score = 125 bits (315), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 68/174 (39%), Positives = 107/174 (61%)
Query: 153 VILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIG 212
++LIG GF P+ ++ + RQ I +PDALDLL +CVE+G+ +D AL +VA+++
Sbjct: 95 LVLIGAFGFYLPNAMLARRIAARQRMIVEDFPDALDLLTVCVEAGLGLDAALTKVADELR 154
Query: 213 GQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSL 272
+S +++E+ L + E+ ++ A N RT + V + LIQ+DR+GTSIG SL
Sbjct: 155 LRSPVVADELGLMLLEMRSGFTKETALRNLALRTGAEDVDAFSTMLIQADRFGTSIGASL 214
Query: 273 RVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
RVL R++R M AE++AA + KL P+I P L+ V++GPA + I T+
Sbjct: 215 RVLSDTLRTQRRMRAEERAAKIALKLLFPLIFCIFPALLTVLLGPAFIHIYRTL 268
>gi|73542334|ref|YP_296854.1| type II secretion system protein [Ralstonia eutropha JMP134]
gi|72119747|gb|AAZ62010.1| type II secretion system protein [Ralstonia eutropha JMP134]
Length = 323
Score = 125 bits (315), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 74/218 (33%), Positives = 129/218 (59%), Gaps = 2/218 (0%)
Query: 105 AGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAP 164
AG+RS + + + ++ I ++G+I + L + + + + L+ +G+ P
Sbjct: 96 AGWRSTSAAPLYFTAKTILAIALPMIGLIAVSNQPALQQQ--HIMLALLTLLAAIGYYLP 153
Query: 165 SVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLL 224
+ +S+ V +RQ ++ +PD +DLL +CVE+G+ +D AL RVA+++ + L++E+ L
Sbjct: 154 NTVLSHKVAERQRAVFEEFPDVIDLLTVCVEAGLGLDAALMRVADELALRCPVLADELQL 213
Query: 225 TIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERL 284
+ EL +++ A N RT ++ V LIQ+DR+GTS+GDSLRVL R++R
Sbjct: 214 MLLELRSGFSKEKALSNLSLRTGVEDVDKFASMLIQADRFGTSLGDSLRVLSDMLRTKRR 273
Query: 285 MEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
M AE++AA + KL P+I P L+LV++GPA + I
Sbjct: 274 MRAEEQAAKIALKLLFPLIFTIFPSLLLVLLGPAFIQI 311
>gi|224824220|ref|ZP_03697328.1| type II secretion system protein [Lutiella nitroferrum 2002]
gi|224603639|gb|EEG09814.1| type II secretion system protein [Lutiella nitroferrum 2002]
Length = 314
Score = 125 bits (315), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 79/223 (35%), Positives = 127/223 (56%), Gaps = 12/223 (5%)
Query: 105 AGFRSEYSLNILLVVR----LVVP-IIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYV 159
AG+R + ++ + + L+ P I+FL LG+ G+ + + +L +
Sbjct: 87 AGYRGQSAVPLFFGAKTFLALLFPTILFLYLGLTG--GHKDGTNFLLFM-----LLAAGI 139
Query: 160 GFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLS 219
G+ P++ +S V+ RQ I +PDA+DLLL+CVE+G+ +D AL +V E++ +S L+
Sbjct: 140 GYYLPNILLSRRVENRQREIFNNFPDAIDLLLVCVEAGLGLDAALLKVGEEMRIKSPILA 199
Query: 220 EEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSET 279
+E+ L EL ++ A N RT + V LIQSDR+GTSIG+SLRV +
Sbjct: 200 DELHLVNLELRAGSTKERALRNLAIRTGVQEVDTLVAMLIQSDRFGTSIGESLRVHADDL 259
Query: 280 RSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
R++R + AE+ AA + KL P+I P L+LV++GPA + I
Sbjct: 260 RTKRRLRAEEAAAKIPLKLLFPLIFCIFPALLLVLLGPAFIQI 302
>gi|167566943|ref|ZP_02359859.1| type II secretion system protein [Burkholderia oklahomensis EO147]
gi|167574012|ref|ZP_02366886.1| type II secretion system protein [Burkholderia oklahomensis C6786]
Length = 318
Score = 125 bits (314), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 79/233 (33%), Positives = 133/233 (57%), Gaps = 4/233 (1%)
Query: 96 ENIVNKLR--AAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAV 153
EN +LR AG+RS + + + V+ + + ++ G + L + P+ L V +
Sbjct: 81 ENSPLRLRLINAGWRSASAAPLYFAAKTVLALALPAAAMPFLIGTE-LADSPYILSV-ML 138
Query: 154 ILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGG 213
+ IG GF P+ +S + RQ I +PDALDLL +C+E+G+ +D L +VA+++
Sbjct: 139 VTIGAFGFYLPNAVLSRRIASRQRVIVEDFPDALDLLTVCIEAGLGLDAGLMKVADELRL 198
Query: 214 QSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLR 273
+S +++E+ L + E+ +++ A N RT + + + LIQ+DR+GTSIG SLR
Sbjct: 199 RSPVVADELGLMLLEMRSGFSKETALRNLALRTGAEDIDAFSAMLIQADRFGTSIGASLR 258
Query: 274 VLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
VL R++R M AE++AA + KL P+I P L+ V++GPA + I T+
Sbjct: 259 VLSDTLRTQRRMRAEERAAKIALKLLFPLIFCIFPALLTVLLGPAFIHIYRTL 311
>gi|94309584|ref|YP_582794.1| type II secretion system protein [Cupriavidus metallidurans CH34]
gi|93353436|gb|ABF07525.1| Bacterial type II secretion system protein, probably involved in
Flp pilus synthesis [Cupriavidus metallidurans CH34]
Length = 323
Score = 125 bits (314), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 73/218 (33%), Positives = 124/218 (56%), Gaps = 2/218 (0%)
Query: 105 AGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAP 164
AG+R + + + ++ + ++G+I E V AV+ +G+ P
Sbjct: 96 AGWRDASAAPLYFAAKTLLAVALPMIGLIATSSVPAFQEQSTTFAVLAVL--AAIGYYIP 153
Query: 165 SVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLL 224
++ +S V RQ ++ +PD +DLL +CVE+G+ +D AL RVA+++ + L++E+ L
Sbjct: 154 NIVLSRKVTARQRTVFEEFPDVIDLLTVCVEAGLGLDAALMRVADELALRCPVLADELQL 213
Query: 225 TIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERL 284
+ EL +++ A N RT ++ V LIQ+DR+GTS+G+SLRVL R++R
Sbjct: 214 MLLELRSGFSKEKALSNLSLRTGVEDVDKFASMLIQADRFGTSLGESLRVLSDMLRTKRR 273
Query: 285 MEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
M AE++AA + KL P+I P L+LV++GPA + I
Sbjct: 274 MRAEEQAAKIALKLLFPLIFTIFPTLLLVLLGPAFIQI 311
>gi|17545369|ref|NP_518771.1| tight adherence TadC-related transmembrane protein [Ralstonia
solanacearum GMI1000]
gi|17427661|emb|CAD14180.1| probable pilus assembly tadc transmembrane protein [Ralstonia
solanacearum GMI1000]
Length = 315
Score = 125 bits (314), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 96/318 (30%), Positives = 167/318 (52%), Gaps = 19/318 (5%)
Query: 16 VAITTAVSIFSLIYAVVIPSLG---SGELEKRMKSVAVEREILRKQQITSLQKDSASSRL 72
V I F++++ V+ +L L++R+ + +RE+ R Q +D R
Sbjct: 4 VHIVLLAGTFAIVFGAVLAALTLLRPSTLDRRLGQI--DRELPRSQP-----RDDGRDRA 56
Query: 73 RTRDSKSLRNFVKKLNL-KAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPI---IFL 128
R + L + K +L K ++ + AG+R+ ++ + ++ ++ + L
Sbjct: 57 WLRRLEQLAKPLAKASLPKEGWEGSSLRQRFVHAGWRAPEAIAVYFGIKTILTFGLPLLL 116
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
G++ F D+ ++ L GA + VGF P+V +S ++ RQ I ++PD+LD
Sbjct: 117 WAGLVGRFNADQQSQF-MSLLFGAAV----VGFYLPNVLLSLKIKYRQREIFESFPDSLD 171
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
L+++CVE+G+S+D A+ RV +D+ ++EE L EL +R+ A N RT +
Sbjct: 172 LIMVCVEAGLSLDAAILRVVDDMRTARPVMAEEYELLTLELRAGLSREKALRNLAARTGV 231
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP 308
D V LIQ+DR+GTS+ DSLRV R++R M AE++AA +G K+ P+I P
Sbjct: 232 DDVSMLVAMLIQADRFGTSVADSLRVHSDMLRTKRHMLAEERAAKIGTKVLFPLIFCIFP 291
Query: 309 VLILVIIGPAILSIIDTM 326
L +V++GPA L +I +
Sbjct: 292 SLYVVLLGPAALQMIAAL 309
>gi|171320623|ref|ZP_02909643.1| type II secretion system protein [Burkholderia ambifaria MEX-5]
gi|171094136|gb|EDT39223.1| type II secretion system protein [Burkholderia ambifaria MEX-5]
Length = 314
Score = 125 bits (313), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 75/227 (33%), Positives = 128/227 (56%), Gaps = 1/227 (0%)
Query: 101 KLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVG 160
+L AGFR +++ ++ ++L ++F L I++ +L E+ F +R A++ +G
Sbjct: 89 QLTRAGFRERRAVSTMIGIKLSCGVLFAGLAIVFSPYIPRLGEF-FVIRAVAMVGAFVIG 147
Query: 161 FCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSE 220
P + ++++R+ I +PDALDLL+IC +G S+ +RRVA ++ PL++
Sbjct: 148 VIVPEYVLGAVIRRRRRIIAACFPDALDLLVICTMAGNSLASGVRRVARELERICPPLAD 207
Query: 221 EMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETR 280
E+ + EL+ N A +F R R+ L QS R+GT I +LR L R
Sbjct: 208 ELTVCADELTLSGNVSEALAHFALRVNFSSARSLATTLTQSQRFGTPITQALRTLSRSER 267
Query: 281 SERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
+E+++ E+KAA L PK+TVPM++F LP + L+ GPA + +I+ K
Sbjct: 268 TEQVVALEEKAAKLAPKITVPMMLFILPTVGLIAAGPAAIRLIEVFK 314
>gi|254511547|ref|ZP_05123614.1| type II/IV secretion system protein, TadC subfamily
[Rhodobacteraceae bacterium KLH11]
gi|221535258|gb|EEE38246.1| type II/IV secretion system protein, TadC subfamily
[Rhodobacteraceae bacterium KLH11]
Length = 325
Score = 125 bits (313), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 77/256 (30%), Positives = 138/256 (53%), Gaps = 5/256 (1%)
Query: 71 RLRTRD-SKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLI 129
RLRT ++ L F L K + KLR AG++S+ ++ + + I+ ++
Sbjct: 67 RLRTASRNEQLEKFANFLEPKDQEEYSAVQLKLRQAGYQSKDAVRFYHFAQFALGIVGIL 126
Query: 130 LGI--IWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
+G+ + +F D+ E+ + V++ G VG+ P WI+ V++R+ +I +PD L
Sbjct: 127 IGVSLVTVFAGDQ--EFDSTQLLIRVLVPGVVGYFVPKYWITRRVEERKEAIVNGFPDTL 184
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQ 247
DL+L+CVE+G S+DQA+ RVA ++ ++ E + E+ + +F R
Sbjct: 185 DLMLVCVEAGQSLDQAIVRVAAEMKASYPDIALEFEVVAYEMKAGKEKDTVLRDFATRCG 244
Query: 248 MDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFL 307
+ V +IQS +GTSI D+LRV E R +R+M AE+ A L K+T+ ++ +
Sbjct: 245 VQDVSAFVTVMIQSAAFGTSIADALRVYSDEMRDKRVMRAEEAANKLPTKMTLATMMLTV 304
Query: 308 PVLILVIIGPAILSII 323
P L+++++GP+ I+
Sbjct: 305 PPLLVILVGPSAKGIM 320
>gi|302343414|ref|YP_003807943.1| Type II secretion system F domain protein [Desulfarculus baarsii
DSM 2075]
gi|301640027|gb|ADK85349.1| Type II secretion system F domain protein [Desulfarculus baarsii
DSM 2075]
Length = 305
Score = 125 bits (313), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 74/222 (33%), Positives = 121/222 (54%), Gaps = 4/222 (1%)
Query: 105 AGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAP 164
AGFRS +LN+ VRL FL+ I++ G L++ V + ++ +G+ P
Sbjct: 87 AGFRSVEALNVFTGVRLAA--AFLLPAIVFALGV--LIQAKRPAMVISTLIAAALGYLGP 142
Query: 165 SVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLL 224
+ L +R + I R P LDLL+I VESG+ +D A++RV+ D+ S L+ E+ +
Sbjct: 143 GYVLEKLALRRSALIARQMPSMLDLLVIAVESGLGLDAAVQRVSRDLAASSPVLAHELAI 202
Query: 225 TIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERL 284
EL R A N R +D + LIQ+DR+G SIG S+RV + R++R
Sbjct: 203 FSLELKLGAARGDALRNLAKRCGVDEMAGLVAMLIQADRFGVSIGRSIRVFADDLRTKRR 262
Query: 285 MEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
+ E++AA + KL P++ P ++ V+ GPA+++I++ M
Sbjct: 263 QKLEEQAAKIPLKLLFPVLFLIFPAIMAVMAGPAVINIVEKM 304
>gi|46580529|ref|YP_011337.1| hypothetical protein DVU2124 [Desulfovibrio vulgaris str.
Hildenborough]
gi|46449948|gb|AAS96597.1| conserved hypothetical protein [Desulfovibrio vulgaris str.
Hildenborough]
Length = 284
Score = 124 bits (312), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 73/221 (33%), Positives = 124/221 (56%), Gaps = 6/221 (2%)
Query: 105 AGFRSEYSLNILLVVRLVVPIIFLILGII--WIFGYDKLLEYPFQLRVGAVILIGYVGFC 162
AG+R+ + + V+ + + L++G+ + G D L +G + G
Sbjct: 60 AGYRNRTAPRVFWGVKAGLTVAGLLMGLTVRLLLGDDVPAGMVALLFIGPAV----TGLY 115
Query: 163 APSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEM 222
P++W+S+ +++R+ I A PDALDLL++CVE+G+ +DQAL RVA+++ S L+EE+
Sbjct: 116 LPNIWLSSRIKERRQEIINALPDALDLLVVCVEAGMGLDQALARVAKELQSTSPVLAEEL 175
Query: 223 LLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSE 282
L+I EL +R +N R ++ V + +IQ+D +GTSI +LRV R+
Sbjct: 176 QLSILELRAGKSRADTLKNLAARVAIEDVNSLVTLIIQADAFGTSIASTLRVYSDTMRTT 235
Query: 283 RLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSII 323
R AE+ AA + KL P++ LP L + I+GPA + ++
Sbjct: 236 RFQRAEEIAAKMPVKLLFPLVFCILPALFVTIMGPAFIKLM 276
>gi|260574611|ref|ZP_05842614.1| type II secretion system protein [Rhodobacter sp. SW2]
gi|259023028|gb|EEW26321.1| type II secretion system protein [Rhodobacter sp. SW2]
Length = 326
Score = 124 bits (312), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 64/170 (37%), Positives = 105/170 (61%)
Query: 157 GYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSV 216
G VG+ P W+++ V+KRQ+ I +PDALD++L+CVE+G S+DQ++ RVA +
Sbjct: 152 GAVGYYLPQYWVNSRVKKRQAEIVSGFPDALDMMLVCVEAGQSMDQSIIRVARESRAGYP 211
Query: 217 PLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLV 276
L++E + E+ R + R + V + L+QS +GTSI ++LRV
Sbjct: 212 ALADEFDMVAQEIKAGKERTTVMRDMSERVGIADVASFVTTLVQSATFGTSIAEALRVYS 271
Query: 277 SETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
+E R +R+M AE+KA +L KLT+ ++F LP L++++IGP+I +I T+
Sbjct: 272 AEMRDKRVMRAEEKANTLPTKLTLGTMLFTLPPLLIILIGPSIHNIAVTL 321
>gi|32473987|ref|NP_866981.1| secretion system protein TadC [Rhodopirellula baltica SH 1]
gi|32444524|emb|CAD74523.1| probable secretion system protein TadC [Rhodopirellula baltica SH
1]
Length = 328
Score = 124 bits (312), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 77/239 (32%), Positives = 131/239 (54%), Gaps = 14/239 (5%)
Query: 95 DENIVNKLRA----AGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRV 150
+E + KLR AGFR E + I +++LV + L+LG + D L +
Sbjct: 95 NEEEMGKLREKLINAGFRRESAPVIFKLIQLVCTGVGLMLGGVTGAVLDGLTQ------- 147
Query: 151 GAVI--LIGYVG-FCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRV 207
G +I L+G +G F PS+ + + KR+ I PDALDL+++CVE+G+ +DQALR+V
Sbjct: 148 GMIIKLLLGMIGGFMIPSLILGFMASKRREKIFLGLPDALDLMVVCVEAGLGLDQALRKV 207
Query: 208 AEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTS 267
AE++ + EE ++ +L R R+ +D ++ LIQ+D++G+S
Sbjct: 208 AEEMQKSHKAIGEEFSISNHQLQLGSPRSEVLSGLGYRSGVDDLKQLASILIQADKFGSS 267
Query: 268 IGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
+ +LRV R++R AE+KAA K+ P+++F P + +V++GPA +++ M
Sbjct: 268 VAQALRVQSDSMRTKRRQIAEEKAAKTAVKMIFPLVLFIFPGIFVVLVGPAAINMYRQM 326
>gi|327543264|gb|EGF29697.1| flp pilus assembly protein TadC [Rhodopirellula baltica WH47]
Length = 328
Score = 124 bits (312), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 77/239 (32%), Positives = 131/239 (54%), Gaps = 14/239 (5%)
Query: 95 DENIVNKLRA----AGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRV 150
+E + KLR AGFR E + I +++LV + L+LG + D L +
Sbjct: 95 NEEEMGKLREKLINAGFRRESAPVIFKLIQLVCTGVGLMLGGVTGAVLDGLTQ------- 147
Query: 151 GAVI--LIGYVG-FCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRV 207
G +I L+G +G F PS+ + + KR+ I PDALDL+++CVE+G+ +DQALR+V
Sbjct: 148 GMIIKLLLGMIGGFMIPSLILGFMASKRREKIFLGLPDALDLMVVCVEAGLGLDQALRKV 207
Query: 208 AEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTS 267
AE++ + EE ++ +L R R+ +D ++ LIQ+D++G+S
Sbjct: 208 AEEMQKSHKAIGEEFSISNHQLQLGSPRSEVLSGLGYRSGVDDLKQLASILIQADKFGSS 267
Query: 268 IGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
+ +LRV R++R AE+KAA K+ P+++F P + +V++GPA +++ M
Sbjct: 268 VAQALRVQSDSMRTKRRQIAEEKAAKTAVKMIFPLVLFIFPGIFVVLVGPAAINMYRQM 326
>gi|149911401|ref|ZP_01900019.1| hypothetical putative tight adherence TadC-related
transmembraneprotein [Moritella sp. PE36]
gi|149805509|gb|EDM65514.1| hypothetical putative tight adherence TadC-related
transmembraneprotein [Moritella sp. PE36]
Length = 325
Score = 124 bits (312), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 82/278 (29%), Positives = 145/278 (52%), Gaps = 9/278 (3%)
Query: 57 KQQITSLQKDSASSR-LRTRDSKSLRNFVKKLNL-----KAILVDENIVNKLRAAGFRSE 110
K+Q+ L K+S S L SL + + KLN K D + L AGF S+
Sbjct: 49 KKQLNKLSKESTSHDDLAKEYESSLEHTIDKLNHVPFINKRYQGDSSTKKLLIHAGFHSQ 108
Query: 111 YSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISN 170
+L I ++L++ +I L + I +++ Y V ++ + + P + +
Sbjct: 109 DALKIFNSIKLLLLLISGALVTLLI---NQISSYSTTKTVYIILFVLGAAYLLPGIILKK 165
Query: 171 LVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELS 230
+ ++R + +KR +PDALDLL++C ESG+ + ++ +RVA+++ LS E+ L +++
Sbjct: 166 IAKRRMADLKRYFPDALDLLIVCCESGLGLLESFQRVAKELQLAHPYLSYELNLVCSKVR 225
Query: 231 FLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKK 290
+ Q A + F +RT ++ +R ++QS R GT + ++R+ E R +RL AE+
Sbjct: 226 YGLTLQQALKEFSDRTGLEDIRGLNSVIVQSLRLGTGVAATIRIYSDEYREKRLQAAEEN 285
Query: 291 AASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMKD 328
AA LG K+ PM+ P +V IGPA+L ++ D
Sbjct: 286 AAKLGVKMIFPMMCCIWPSFFIVAIGPAVLKVMSVWGD 323
>gi|167589644|ref|ZP_02382032.1| type II secretion system protein [Burkholderia ubonensis Bu]
Length = 264
Score = 124 bits (312), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 70/227 (30%), Positives = 128/227 (56%), Gaps = 1/227 (0%)
Query: 101 KLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVG 160
+L AGFR +++ ++ ++L V ++F + I++ +L EY F +R A++ +G
Sbjct: 39 QLTRAGFRERRAVSSMIGIKLSVGVLFACVAIVFSPYIPRLGEY-FVIRALAMVAAFVIG 97
Query: 161 FCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSE 220
P + ++++R+ I PDALDLL+IC +G S+ +RRVA ++ PL++
Sbjct: 98 VIVPEYVLGAMIRRRRRIIAGCLPDALDLLVICTMAGNSLASGVRRVAHELARICPPLAD 157
Query: 221 EMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETR 280
E+ + EL+ + +F R + R+ L QS R+GT I +LR L R
Sbjct: 158 ELSVCADELTLSGDVAATLTHFATRVDLPSARSLATTLTQSQRFGTPITQALRTLARTER 217
Query: 281 SERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
+E+++ E++AA L PK+T+PM++F LP + L+ GPA + +++ +
Sbjct: 218 TEQIVALEERAAKLAPKITLPMMLFILPTVCLIAAGPAAIRLLEVFR 264
>gi|120602154|ref|YP_966554.1| type II secretion system protein [Desulfovibrio vulgaris DP4]
gi|120562383|gb|ABM28127.1| type II secretion system protein [Desulfovibrio vulgaris DP4]
gi|311234268|gb|ADP87122.1| Type II secretion system F domain protein [Desulfovibrio vulgaris
RCH1]
Length = 323
Score = 124 bits (312), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 73/221 (33%), Positives = 124/221 (56%), Gaps = 6/221 (2%)
Query: 105 AGFRSEYSLNILLVVRLVVPIIFLILGII--WIFGYDKLLEYPFQLRVGAVILIGYVGFC 162
AG+R+ + + V+ + + L++G+ + G D L +G + G
Sbjct: 99 AGYRNRTAPRVFWGVKAGLTVAGLLMGLTVRLLLGDDVPAGMVALLFIGPAV----TGLY 154
Query: 163 APSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEM 222
P++W+S+ +++R+ I A PDALDLL++CVE+G+ +DQAL RVA+++ S L+EE+
Sbjct: 155 LPNIWLSSRIKERRQEIINALPDALDLLVVCVEAGMGLDQALARVAKELQSTSPVLAEEL 214
Query: 223 LLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSE 282
L+I EL +R +N R ++ V + +IQ+D +GTSI +LRV R+
Sbjct: 215 QLSILELRAGKSRADTLKNLAARVAIEDVNSLVTLIIQADAFGTSIASTLRVYSDTMRTT 274
Query: 283 RLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSII 323
R AE+ AA + KL P++ LP L + I+GPA + ++
Sbjct: 275 RFQRAEEIAAKMPVKLLFPLVFCILPALFVTIMGPAFIKLM 315
>gi|170704228|ref|ZP_02894801.1| type II secretion system protein [Burkholderia ambifaria IOP40-10]
gi|170130863|gb|EDS99617.1| type II secretion system protein [Burkholderia ambifaria IOP40-10]
Length = 255
Score = 124 bits (312), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 74/227 (32%), Positives = 127/227 (55%), Gaps = 1/227 (0%)
Query: 101 KLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVG 160
+L AGFR +++ ++ ++L ++F I++ +L E+ F +R A++ +G
Sbjct: 30 QLTRAGFRERRAVSAMIGIKLSCGVLFAGFAIVFSPYIPRLGEF-FVIRAVAMVGAFVIG 88
Query: 161 FCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSE 220
P + ++++R+ I +PDALDLL+IC +G S+ +RRVA ++ PL++
Sbjct: 89 VIVPEYVLGAMIRRRRRIIAACFPDALDLLVICTMAGNSLASGVRRVARELQRICPPLAD 148
Query: 221 EMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETR 280
E+ + EL+ N A +F R R+ L QS R+GT I +LR L R
Sbjct: 149 ELTVCADELTLSGNVSEALAHFALRVNFSSARSLATTLTQSQRFGTPITQALRTLSRSER 208
Query: 281 SERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
+E+++ E+KAA L PK+TVPM++F LP + L+ GPA + +I+ K
Sbjct: 209 TEQVVALEEKAAKLAPKITVPMMLFILPTVGLIAAGPAAIRLIEVFK 255
>gi|172062964|ref|YP_001810615.1| type II secretion system protein [Burkholderia ambifaria MC40-6]
gi|171995481|gb|ACB66399.1| type II secretion system protein [Burkholderia ambifaria MC40-6]
Length = 314
Score = 124 bits (311), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 74/227 (32%), Positives = 127/227 (55%), Gaps = 1/227 (0%)
Query: 101 KLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVG 160
+L AGFR +++ ++ ++L ++F I++ +L E+ F +R A++ +G
Sbjct: 89 QLTRAGFRERRAVSAMIGIKLSCGVLFAGFAIVFSPYIPRLGEF-FVIRAVAMVGAFVIG 147
Query: 161 FCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSE 220
P + ++++R+ I +PDALDLL+IC +G S+ +RRVA ++ PL++
Sbjct: 148 VIVPEYVLGAMIRRRRRIIAACFPDALDLLVICTMAGNSLASGVRRVARELERICPPLAD 207
Query: 221 EMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETR 280
E+ + EL+ N A +F R R+ L QS R+GT I +LR L R
Sbjct: 208 ELTVCADELTLSGNVSEALAHFALRVNFSSARSLATTLTQSQRFGTPITQALRTLSRSER 267
Query: 281 SERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
+E+++ E+KAA L PK+TVPM++F LP + L+ GPA + +I+ K
Sbjct: 268 TEQVVALEEKAAKLAPKITVPMMLFILPTVGLIAAGPAAIRLIEVFK 314
>gi|83943934|ref|ZP_00956391.1| type II/IV secretion system protein, TadC subfamily protein
[Sulfitobacter sp. EE-36]
gi|83954507|ref|ZP_00963218.1| type II/IV secretion system protein, TadC subfamily protein
[Sulfitobacter sp. NAS-14.1]
gi|83840791|gb|EAP79962.1| type II/IV secretion system protein, TadC subfamily protein
[Sulfitobacter sp. NAS-14.1]
gi|83845181|gb|EAP83061.1| type II/IV secretion system protein, TadC subfamily protein
[Sulfitobacter sp. EE-36]
Length = 305
Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 79/283 (27%), Positives = 143/283 (50%), Gaps = 33/283 (11%)
Query: 57 KQQITSLQKDSASSRLRTRD-SKSLRNFVK--------KLNLKAILVDENIVNKLRAAGF 107
K+ T RLR D ++ L+ F K +L+ KA+L LR AG+
Sbjct: 34 KRSQTEAADAGKQQRLRQSDRNEKLQKFAKFLEPEDVEELSAKALL--------LRQAGY 85
Query: 108 RSEYSLNILLVVRLVVPIIFLILGIIWI--------FGYDKLLEYPFQLRVGAVILIGYV 159
S ++ ++ + I L++G ++I +K++ Y + G +
Sbjct: 86 SSRDAVRFFHFAQMALGIAGLVIGTVYINFLGGGEGMTTNKMMLY--------TVGPGGI 137
Query: 160 GFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLS 219
G+ P W++ V +R+ I R +PDALD++L+CVE+G S+DQ + RVA ++ L+
Sbjct: 138 GYFLPRYWVTRRVAERKEEITRGFPDALDMMLVCVEAGQSLDQCIVRVARELRASYPALA 197
Query: 220 EEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSET 279
EE + E+ ++ R + V + L+QS +GTSI D+LRV +E
Sbjct: 198 EEFEIVAYEMKAGKDKVSVLNAMGERCGVQDVSSFVTVLVQSAAFGTSIADALRVYAAEM 257
Query: 280 RSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
R +R+M AE+ A L K+T+ ++ +P L+++++ P++++I
Sbjct: 258 RDKRVMRAEEAANKLPTKMTLATMMLTVPPLLIILVAPSVMNI 300
>gi|168702877|ref|ZP_02735154.1| probable secretion system protein TadC [Gemmata obscuriglobus UQM
2246]
Length = 319
Score = 124 bits (310), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 77/223 (34%), Positives = 124/223 (55%), Gaps = 6/223 (2%)
Query: 101 KLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLR-VGAVILIGYV 159
+L AGFRSE + + +R+V ++FL+ + + D F L+ + + +G +
Sbjct: 94 QLANAGFRSENAAGVYQGIRVVCLVVFLLPALFFFLLKDG-----FTLKSIEWTVALGGM 148
Query: 160 GFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLS 219
GF P + + +L RQ I PDALDLL++CVESG+ +D ALR+V +++ G + +
Sbjct: 149 GFYLPQMGLYHLRSTRQKEIFLTLPDALDLLVVCVESGLGLDAALRKVTDEMKGHAKTIC 208
Query: 220 EEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSET 279
EE L +L R+ + RT +D VR+ LIQ+DR+G+SI +LRV
Sbjct: 209 EEFSLANLQLQMGRPRREVLHDLGVRTGVDDVRSLAAILIQADRFGSSIAQALRVQSDSM 268
Query: 280 RSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
R R AE+KAA +L P+++F P + +V++GPA + I
Sbjct: 269 RVRRRQIAEEKAAKTAVQLIFPLVLFIFPSIFVVLVGPAAIQI 311
>gi|254466278|ref|ZP_05079689.1| type II/IV secretion system protein, TadC subfamily
[Rhodobacterales bacterium Y4I]
gi|206687186|gb|EDZ47668.1| type II/IV secretion system protein, TadC subfamily
[Rhodobacterales bacterium Y4I]
Length = 326
Score = 123 bits (308), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 67/224 (29%), Positives = 126/224 (56%)
Query: 101 KLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVG 160
KLR AG+ S+ S+ + + + ++ L+ G+ +++ ++Y Q ++ G G
Sbjct: 97 KLRQAGYHSKDSVRLFHFAQFALGLLGLMGGLFFVYVLKADIDYDSQQMAIRIVGPGAAG 156
Query: 161 FCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSE 220
+ P WI+ +++R+ I +PDALD++L+CVE+G S+DQA+ RVA+++ L+E
Sbjct: 157 YLLPKYWITRRIEERKQKITEGFPDALDMMLVCVEAGQSLDQAIVRVAKELHASYPDLAE 216
Query: 221 EMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETR 280
E + E+ + + R + + + +IQS +GTSI D+LRV E R
Sbjct: 217 EFEVVAYEMKAGKEKDRVLRDMGTRCGVQDISSFVTVMIQSASFGTSIADALRVYAGEMR 276
Query: 281 SERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIID 324
+R+M AE+ A L K+T+ + +P L+++++GP+I I++
Sbjct: 277 DKRVMRAEEAANKLPVKMTLATMGLTVPPLLIILVGPSIQGIMN 320
>gi|87312288|ref|ZP_01094386.1| probable secretion system protein TadC [Blastopirellula marina DSM
3645]
gi|87284992|gb|EAQ76928.1| probable secretion system protein TadC [Blastopirellula marina DSM
3645]
Length = 309
Score = 123 bits (308), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 77/229 (33%), Positives = 126/229 (55%), Gaps = 10/229 (4%)
Query: 101 KLRAAGFRSEYSLNILLVVRLV---VPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIG 157
+L AGFRSE + NI L ++ + +I ++ + Y+ Q + I I
Sbjct: 80 RLTHAGFRSEAAPNIFLGLKFASLLIGLIVGGGLVVLLGNYN-------QSDLFKGIAIA 132
Query: 158 YVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVP 217
+ F PS+ + L +KR+ I R PDALDL+++CVE+G+ +DQA+RRV+E++
Sbjct: 133 GISFYIPSIGLWYLGKKRKEQIFRGLPDALDLMVVCVEAGLGLDQAMRRVSEEMKKTYRV 192
Query: 218 LSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVS 277
++EE L +L R NRT +D +R+ LIQ+D++G+SI +LRV
Sbjct: 193 IAEEFGLCNFQLQVGRQRSDVLHELGNRTGVDDLRSLAAILIQADKFGSSISQALRVQSD 252
Query: 278 ETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
R+ R AE+KAA K+ P++ F P + +V++GPA +++I M
Sbjct: 253 SMRTRRRQIAEEKAAKTAVKMIFPLVFFIFPGIFVVLVGPAAITVIREM 301
>gi|294012231|ref|YP_003545691.1| Flp pilus assembly protein TadC [Sphingobium japonicum UT26S]
gi|292675561|dbj|BAI97079.1| Flp pilus assembly protein TadC [Sphingobium japonicum UT26S]
Length = 322
Score = 123 bits (308), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 84/258 (32%), Positives = 141/258 (54%), Gaps = 16/258 (6%)
Query: 75 RDSKSLRNFVKKLNLKAI-LVDENIVN---KLRAAGFRSEYSLNILLVVRLVV----PII 126
R+S + V ++ + LVD N V+ +L AAG+ S + + + RLV+ P I
Sbjct: 63 RNSSEWKKLVDRIEKMGVSLVDTNNVDLRRRLIAAGYMSPEAPKLFTLFRLVLTFALPAI 122
Query: 127 FLILGIIWIFGYDKLLEYPFQLRVGAVI-LIGYVGFCAPSVWISNLVQKRQSSIKRAWPD 185
F+I + + E P L + V L+ +G P+++IS +RQ I +PD
Sbjct: 123 FVITSL-------RNPEPPTALTLYMVASLLAVLGLYMPNLYISAKASRRQEEIVHGFPD 175
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
ALDL+L+CVE+G+ ++ A+ RV ++ +S + + EL +RQ A +
Sbjct: 176 ALDLMLVCVEAGLGLEAAMDRVGRELALSHPLVSAALGKVVLELRAGRSRQDALRRMADD 235
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
+D +R+ LIQSD+ G+S+G +LRV +E R +R M AE+KA L L+VP++
Sbjct: 236 VDVDEIRSFATLLIQSDQLGSSVGQTLRVYAAEMREKRRMRAEEKAHRLPVLLSVPLVAC 295
Query: 306 FLPVLILVIIGPAILSII 323
LPV+I V++ PA++ ++
Sbjct: 296 MLPVMIGVLMLPAVVRVV 313
>gi|294102185|ref|YP_003554043.1| Type II secretion system F domain protein [Aminobacterium
colombiense DSM 12261]
gi|293617165|gb|ADE57319.1| Type II secretion system F domain protein [Aminobacterium
colombiense DSM 12261]
Length = 296
Score = 122 bits (307), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 67/199 (33%), Positives = 114/199 (57%), Gaps = 9/199 (4%)
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
LIL ++ F L+ PF R+ I++G +G+ P +WI+N ++RQ + PD +
Sbjct: 104 LILAMVSFF----LIPDPF--RISGAIILGALGYMIPGLWITNKGKQRQVEARNQLPDVM 157
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQ 247
DL+++ VE+G+ +D A+ RVA+ + G P+ E + E+S +RQ AF R
Sbjct: 158 DLMVVSVEAGLGLDAAMSRVADRLRG---PMGENFARALHEISLGESRQAAFRGIMERLP 214
Query: 248 MDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFL 307
++ VR+ +LIQ++ G ++ + LR + R ++AE+ A K+ PMI+F
Sbjct: 215 IEEVRHFIASLIQAEELGVAVSEVLRSQAGTLKRLRRLKAEEHARKAPIKILFPMILFIF 274
Query: 308 PVLILVIIGPAILSIIDTM 326
P L +VI+GPA LSI++T+
Sbjct: 275 PSLFVVILGPAFLSIMETL 293
>gi|56477520|ref|YP_159109.1| type II secretion system protein [Aromatoleum aromaticum EbN1]
gi|56313563|emb|CAI08208.1| Bacterial type II secretion system protein, probably involved in
Flp pilus synthesis [Aromatoleum aromaticum EbN1]
Length = 315
Score = 122 bits (307), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 66/177 (37%), Positives = 105/177 (59%)
Query: 146 FQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALR 205
FQ + V+L +G+ P++ ++ L+ RQ I +PDALDL+ +CVE+G+ ++ AL
Sbjct: 125 FQGTLLVVLLAAAIGYYVPNIILNRLIFVRQREIFETFPDALDLMTVCVEAGLGVEAALV 184
Query: 206 RVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYG 265
RVA+++ +S L+EE+ L EL R A N RT ++ V +IQ++R+G
Sbjct: 185 RVADEMQHKSEALAEELHLVTLELRAGLERARALRNLAARTGVEEVEGFVAMVIQAERFG 244
Query: 266 TSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
TSI SLR+ R+ R AE+ AA + KL P+I F P L+LV++GPA++ +
Sbjct: 245 TSIATSLRIHSDMLRTRRRQRAEEAAAKIALKLLFPLIFFIFPSLMLVLLGPAMIQV 301
>gi|153006801|ref|YP_001381126.1| type II secretion system protein [Anaeromyxobacter sp. Fw109-5]
gi|152030374|gb|ABS28142.1| type II secretion system protein [Anaeromyxobacter sp. Fw109-5]
Length = 314
Score = 122 bits (307), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 81/240 (33%), Positives = 125/240 (52%), Gaps = 8/240 (3%)
Query: 91 AILVDENIVNKLRA----AGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPF 146
A DE+ ++LR AGFRS + + + + V+ L+ + P
Sbjct: 71 AATTDEDAESRLRRQLVWAGFRSMRAPKLFVGAKAVLSFGLLLG----FLAVNAARAEPV 126
Query: 147 QLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRR 206
+G + + GF P++W+S+ + R I RA PDALDLL+ CVE+G+ +D AL+R
Sbjct: 127 PFALGIAVWLAGAGFFLPNLWLSSRIANRLRQIDRALPDALDLLVTCVEAGLGLDAALQR 186
Query: 207 VAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGT 266
V+ +I LS E+ LT E+ R F RT +R L Q++ +GT
Sbjct: 187 VSGEIALAWPLLSSELRLTFLEVRAGIPRMDGFRRLAARTGSPELRALAATLTQTELFGT 246
Query: 267 SIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
SI +LRV R R+ AE++AA + K+T+P+I+ LP L VIIGPA ++I+ T+
Sbjct: 247 SIASALRVQAEGIRIRRMQRAEERAAYVAVKMTLPLILCILPSLFAVIIGPAAINIMKTL 306
>gi|218887822|ref|YP_002437143.1| type II secretion system protein [Desulfovibrio vulgaris str.
'Miyazaki F']
gi|218758776|gb|ACL09675.1| type II secretion system protein [Desulfovibrio vulgaris str.
'Miyazaki F']
Length = 326
Score = 122 bits (307), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 63/166 (37%), Positives = 99/166 (59%)
Query: 159 VGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPL 218
VG AP+VW+S ++ R+ I + PDALDLL++CVE+G+ +DQA RVA ++ + L
Sbjct: 154 VGLYAPNVWLSRRIKARRLDIINSLPDALDLLVVCVEAGMGLDQAFSRVAREMAATNPVL 213
Query: 219 SEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSE 278
+EE+ L I EL +R A +N R ++ V + ++Q+D +GTSI +LRV
Sbjct: 214 AEELNLVILELRAGKSRAEALKNLAARVALEDVNSLVTLIVQADAFGTSISSTLRVYSDT 273
Query: 279 TRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIID 324
R+ R AE+ AA + KL P++ LP L + I+GPA + ++
Sbjct: 274 MRTTRFQRAEEIAAKMPVKLLFPLVFCILPALFVTIMGPAFIKLMQ 319
>gi|157961842|ref|YP_001501876.1| type II secretion system protein [Shewanella pealeana ATCC 700345]
gi|157846842|gb|ABV87341.1| type II secretion system protein [Shewanella pealeana ATCC 700345]
Length = 320
Score = 122 bits (307), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 95/339 (28%), Positives = 159/339 (46%), Gaps = 56/339 (16%)
Query: 5 FFDLFDATELAV-------AITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRK 57
FFD E A+ +T A+SI LI V P + R+KS+ E+
Sbjct: 11 FFDDPQHVEWAIYSISAIAGVTLAISISYLISGVYSP------IRSRLKSLNGEKVTKNS 64
Query: 58 QQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNK--LRAAGFRSEYSLNI 115
Q +T +L + + ++ K L N + L AGF SE +L +
Sbjct: 65 QDVTG----------------TLEHGIGEMAKKPFLNFSNHETRRLLIHAGFHSENALAV 108
Query: 116 LLVVRLVVPIIFLILGII-----------WIFGYDKLLEYPFQLRVGAVILIGYVGFCAP 164
RL++ + I ++ W F Y F L +G F AP
Sbjct: 109 FNASRLLLILFGFITSLLILNLFPNISGFWTF-------YIFCLFIGGA-------FIAP 154
Query: 165 SVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLL 224
S+ + +L ++R ++ +PDALDLL++C E+G+ + A++RVA ++ L+ E+ L
Sbjct: 155 SMVLQSLSKRRMRKLRVGFPDALDLLVVCCEAGLGLMAAMQRVARELAFSHPSLASELEL 214
Query: 225 TIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERL 284
+++ +VA + F RT ++ ++ A+ QS R GT I ++LRV E R++RL
Sbjct: 215 VCSKVRAGLTIKVALQEFTERTGLEDIKGLNSAISQSMRLGTGIAETLRVFSDEYRNKRL 274
Query: 285 MEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSII 323
AE++AA L K+ PM+ P +V +GPA+L ++
Sbjct: 275 QAAEEQAAKLAVKMIFPMMCCIWPSFFIVAVGPAVLKVM 313
>gi|167836684|ref|ZP_02463567.1| Bacterial type II secretion system protein F domain [Burkholderia
thailandensis MSMB43]
Length = 310
Score = 122 bits (306), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 75/229 (32%), Positives = 127/229 (55%), Gaps = 5/229 (2%)
Query: 97 NIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILI 156
+ +L +AGFR ++++L ++L+V + F + I+ ++ EY F R A+++
Sbjct: 80 KVAQRLISAGFRDRRAVSVLAGLKLLVGVGFALGMIVGASHVPRIGEY-FVFR--ALMMA 136
Query: 157 G--YVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQ 214
G +G P + ++++RQ I PDALDLL+IC +G S+ A++RVA ++
Sbjct: 137 GAFMIGMMLPEFVLDLMIRQRQKRIAAYLPDALDLLVICTNAGNSLVVAIKRVASELKMI 196
Query: 215 SVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRV 274
PL++E +T EL + A R + R L+QS +YGT I SLR
Sbjct: 197 CPPLADEFAVTADELQIGGDISSALNALAKRIAVPSTRALVTTLVQSQQYGTPITQSLRQ 256
Query: 275 LVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSII 323
L RS +++ E+KAA L PK+++PM++F +P + L+ GPAI+ +I
Sbjct: 257 LSRTERSMQIVALEEKAAKLAPKMSLPMLLFIMPTVALIAAGPAIIRLI 305
>gi|221067370|ref|ZP_03543475.1| type II secretion system protein [Comamonas testosteroni KF-1]
gi|220712393|gb|EED67761.1| type II secretion system protein [Comamonas testosteroni KF-1]
Length = 303
Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 71/224 (31%), Positives = 126/224 (56%), Gaps = 13/224 (5%)
Query: 105 AGFRSEYSLNILLVVRLVVPII--FLILGIIWIFGYD---KLLEYPFQLRVGAVILIGYV 159
AG R E + + + ++P++ FL+ ++ G +LL YP ++ G V
Sbjct: 77 AGIRHENAPLLYFGAKTLLPLVMMFLVYSLMLAQGTTDSLQLLLYP--------LVTGLV 128
Query: 160 GFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLS 219
P++ + + +R+ I +PDA DL+L+CVE+G+ +D AL +V +I +S L+
Sbjct: 129 ACYLPNLVLRWMAARRKREIFENFPDAADLMLVCVEAGMGLDAALGKVTAEIRIKSEALA 188
Query: 220 EEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSET 279
+E+ T E+ R+ + N RT +D + T L Q+DR+GTSIGDS+RV +
Sbjct: 189 QELHWTNLEMRAGSTREKSLRNLAARTGVDEIHAFTAMLTQADRFGTSIGDSIRVFSDDL 248
Query: 280 RSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSII 323
R +R M AE+ AA + K+ +P++ P +++V++GPAI+ ++
Sbjct: 249 RHKRQMRAEELAAKIPTKMLLPLVTCIFPAIVMVVLGPAIIRLL 292
>gi|328953758|ref|YP_004371092.1| Type II secretion system F domain protein [Desulfobacca acetoxidans
DSM 11109]
gi|328454082|gb|AEB09911.1| Type II secretion system F domain protein [Desulfobacca acetoxidans
DSM 11109]
Length = 302
Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 75/232 (32%), Positives = 123/232 (53%), Gaps = 16/232 (6%)
Query: 101 KLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVI------ 154
KL AG + + L +L P+ +I+GI L VG ++
Sbjct: 78 KLMLAGCYGSRAFSRFLFFKLTSPLAAIIIGI----------PLSLNLNVGLIMKPVFLY 127
Query: 155 LIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQ 214
L+ GF P++ +++ + RQ I PDALDLL++CVE+G+ ++ A++RVA+D+
Sbjct: 128 LLLAFGFYLPNLVLNHKISARQKKISEGLPDALDLLVVCVEAGLGLNAAMKRVADDLKMN 187
Query: 215 SVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRV 274
+ LS E + E+ +R+ A N RT ++ + LIQ+DR+GTSI +LRV
Sbjct: 188 NPVLSLEFNMLNLEILAGLDREQALRNLAERTGVEELSTLCAILIQADRFGTSIAQALRV 247
Query: 275 LVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
R+ R E+ AA KL P+I+F P L++VI+GPA++ + ++M
Sbjct: 248 QSDTMRTNRRQRLEELAARTPVKLVFPLILFIFPALVVVILGPAVIQVAESM 299
>gi|197123313|ref|YP_002135264.1| type II secretion system protein [Anaeromyxobacter sp. K]
gi|196173162|gb|ACG74135.1| type II secretion system protein [Anaeromyxobacter sp. K]
Length = 306
Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 61/172 (35%), Positives = 107/172 (62%)
Query: 155 LIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQ 214
LI + F P++W+ + VQ RQ+ + R+ PDALDLL+ CVE+G+ +D AL+RV++++
Sbjct: 127 LITGIAFFLPNLWLRSRVQARQTQLDRSLPDALDLLVTCVEAGLGLDSALQRVSDEVALA 186
Query: 215 SVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRV 274
LS+E+ L E+ R AF RT +R+ + L Q++ +GTS+G +LR+
Sbjct: 187 HPLLSKELRLVFLEVKAGIPRIAAFRRMAERTGAPELRSLSATLAQTELFGTSVGAALRI 246
Query: 275 LVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
R R+ AE+KAA + K+++P+++ LP + V++GPA++++ D +
Sbjct: 247 QAEGIRIRRMHRAEEKAAYVSVKMSLPLVLCILPCVFAVVLGPAVVNMADRL 298
>gi|157375501|ref|YP_001474101.1| putative putative tight adherence TadC-like transmembrane protein
[Shewanella sediminis HAW-EB3]
gi|157317875|gb|ABV36973.1| conserved hypothetical putative tight adherence TadC-related
transmembrane protein [Shewanella sediminis HAW-EB3]
Length = 321
Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 92/323 (28%), Positives = 167/323 (51%), Gaps = 20/323 (6%)
Query: 5 FFDLFDATE-LAVAITTAVSIFSLIYAVVIPSLGSG---ELEKRMKSVAVEREILRKQQI 60
F LFD E + AI I +++A+ + L SG L +R+KS+ +++QI
Sbjct: 8 FGSLFDDPEQIKWAIFAVAGIAGVMFALSLAFLISGIYSPLRQRLKSLN------KEEQI 61
Query: 61 TSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVR 120
++Q D ++ + + V+K L + ++ L AG SE ++ I +R
Sbjct: 62 KTVQTDVNATL-----EHGIGSMVEKSPLN--MSNDETRRLLIHAGLHSENAMAIFSSIR 114
Query: 121 LVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIK 180
+++ +I ++ + Y L + V V L+ F PS+ + + +R ++
Sbjct: 115 IILLLIGAGSSVLVLSLYPDL---STMMSVYIVALLVGGAFLLPSLVLQKIASRRMRMLR 171
Query: 181 RAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFE 240
+PDALDLL++C E+G+ + A++RVA ++ L+ E+ L +++ +VA
Sbjct: 172 TGFPDALDLLVVCCEAGLGLMAAMQRVARELALSHPTLASELDLVCSKVRAGLTVKVALN 231
Query: 241 NFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV 300
F +RT ++ ++ A+ QS R GT I ++LRV E R++RL EAE++AA L K+
Sbjct: 232 EFTDRTGLEDIKGLNSAISQSIRLGTGIAETLRVFSDEYRNKRLQEAEEQAAKLAVKMIF 291
Query: 301 PMIIFFLPVLILVIIGPAILSII 323
PM++ P +V IGPA+L ++
Sbjct: 292 PMMLCIWPSFFIVAIGPAVLKVM 314
>gi|167581954|ref|ZP_02374828.1| Bacterial type II secretion system protein F domain [Burkholderia
thailandensis TXDOH]
Length = 271
Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 74/229 (32%), Positives = 127/229 (55%), Gaps = 5/229 (2%)
Query: 97 NIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILI 156
+ +L +AGFR +++++ ++LVV + ++ ++ +Y F LRV +++
Sbjct: 41 KLAARLASAGFRERRAVSVMAGLKLVVGACAGLAALVVGAHVPRVGDY-FVLRV--LMMA 97
Query: 157 G--YVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQ 214
G +G P + V +RQ +I PDALDLL+IC +G S+ A+RRVA ++G
Sbjct: 98 GAFVIGMMLPEHALGFAVARRQKTIAAYLPDALDLLVICTNAGNSLAVAIRRVASELGTI 157
Query: 215 SVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRV 274
PL++E + EL + A R + +R L+QS +YGT I SLR+
Sbjct: 158 CPPLADEFSVCADELQIGGDAAFALNAMAARIGLPSMRALVTTLVQSQQYGTPITQSLRM 217
Query: 275 LVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSII 323
L R+ +++ E+KAA L PK+T+PM++F +P + L+ GPA++ +I
Sbjct: 218 LSRTERAMQMIALEEKAAKLAPKMTLPMMLFVMPTVALIAAGPAVIRLI 266
>gi|299067812|emb|CBJ39023.1| Tad secretion system, secretion accessory protein [Ralstonia
solanacearum CMR15]
Length = 315
Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 96/319 (30%), Positives = 168/319 (52%), Gaps = 21/319 (6%)
Query: 16 VAITTAVSIFSLIYAVVIPS---LGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRL 72
V I F++++ V+ + L L++R+ + +RE+ R Q +D R
Sbjct: 4 VHIVLLAGTFAIVFGAVLAAMTLLRPSTLDRRLGQI--DRELPRTQP-----RDDGHDRA 56
Query: 73 RTRDSKSLRNFVKKLNL-KAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPI---IFL 128
R + L + K +L K ++ + AG+R+ ++ + ++ ++ + L
Sbjct: 57 WLRRLEQLAKPLAKASLPKEGWEGSSLRQRFVHAGWRAPEAIAVYFGIKTILTFGLPLLL 116
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
G++ D+ ++ L GA + VGF P+V +S ++ RQ I ++PD+LD
Sbjct: 117 WAGLVGRINADQQSQF-MSLLFGAAV----VGFYLPNVLLSLKIKYRQREIFESFPDSLD 171
Query: 189 LLLICVESGISIDQALRRVAEDI-GGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQ 247
L+++CVE+G+S+D A+ RV +++ + V E LLT+ + LP R+ A N RT
Sbjct: 172 LIMVCVEAGLSLDAAILRVVDEMRTARPVMAEEYELLTLELRAGLP-REKALRNLAARTG 230
Query: 248 MDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFL 307
+D V LIQ+DR+GTS+ DSLRV R++R M AE++AA +G K+ P+I
Sbjct: 231 VDDVSMLVAMLIQADRFGTSVADSLRVHSDMLRTKRHMLAEERAAKIGTKVLFPLIFCIF 290
Query: 308 PVLILVIIGPAILSIIDTM 326
P L +V++GPA L +I +
Sbjct: 291 PSLYVVLLGPAALQMIAAL 309
>gi|84516638|ref|ZP_01003997.1| type II/IV secretion system protein, TadC subfamily [Loktanella
vestfoldensis SKA53]
gi|84509674|gb|EAQ06132.1| type II/IV secretion system protein, TadC subfamily [Loktanella
vestfoldensis SKA53]
Length = 316
Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 75/259 (28%), Positives = 139/259 (53%), Gaps = 1/259 (0%)
Query: 69 SSRLRTRDSK-SLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIF 127
+ RLR SK +L + L + + KL +G+RS+ ++ I V+ + I
Sbjct: 57 TERLRAASSKDTLEKYSNFLEPQNAAEYSAVKLKLLQSGYRSKNAVRIYHFVQFALGITG 116
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
L G I+ Q + +++ G +G+ P W++ V+ R+ +I A+PD+L
Sbjct: 117 LFGGGIYSLIEMAQRTVNTQELIMMILVPGGIGYMFPKYWVTRRVEVRKEAIINAFPDSL 176
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQ 247
DL+L+CVE+G S+DQ++ RV+ ++ L+EE + E ++ ++ R
Sbjct: 177 DLMLVCVEAGQSLDQSILRVSNELRTGFPELAEEFEIVSQEAKAGKDKTTVLKDMAERCG 236
Query: 248 MDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFL 307
+ + + ++QS ++GTSI D+LRV SE R +R+M AE+ A L K+T+ ++ +
Sbjct: 237 VPDISSFVTVMVQSAQFGTSISDALRVYASEMRDKRVMRAEEAANKLPTKMTLATMMLTV 296
Query: 308 PVLILVIIGPAILSIIDTM 326
P L+ ++IGP+I +I ++
Sbjct: 297 PPLMAILIGPSIYAITTSL 315
>gi|294676064|ref|YP_003576679.1| type II secretion system protein [Rhodobacter capsulatus SB 1003]
gi|294474884|gb|ADE84272.1| type II secretion system protein [Rhodobacter capsulatus SB 1003]
Length = 337
Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 87/315 (27%), Positives = 164/315 (52%), Gaps = 9/315 (2%)
Query: 14 LAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLR 73
+A+A AV + + + A+V S L+K KS+A + Q TS + + +LR
Sbjct: 21 IALAALGAVLVLAALPALV--SRREDPLDKLRKSLAPGSGTVGAAQATSKK----AQKLR 74
Query: 74 -TRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGI 132
T L+ F L ++ L AG+R + + V+ + I L LG+
Sbjct: 75 NTAGPDKLQKFAGFLEPQSKEEMSESRKWLHKAGYRGPHVVRHFHAVQFALAISLLGLGV 134
Query: 133 IWIFGYDKLLEYPFQLR--VGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLL 190
+++ Y+ E P + + A++ G G+ AP W++ V R I+ +PDALD+L
Sbjct: 135 LYVLFYNAGHEVPLESTNAIAAILGPGIGGYYAPRRWVNQRVAARTQEIQDGFPDALDML 194
Query: 191 LICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDC 250
L+CVE+G S+DQ + RV++++ L+EE E+ ++ F R+ +
Sbjct: 195 LVCVEAGQSLDQGIIRVSKELSSSYPALAEEFATVAHEIKAGLDKPTVLRAFAERSGVSD 254
Query: 251 VRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVL 310
V + +IQS ++GTSI ++LR+ ++ R +R+M AE+ A + K+T+ ++F +P L
Sbjct: 255 VASFVTVMIQSQQFGTSIAEALRLYAADMRDKRIMRAEEAANKIPTKMTLGTMMFTVPPL 314
Query: 311 ILVIIGPAILSIIDT 325
+++++GP++ +++
Sbjct: 315 LIILVGPSVHDMMEN 329
>gi|51245380|ref|YP_065264.1| hypothetical protein DP1528 [Desulfotalea psychrophila LSv54]
gi|50876417|emb|CAG36257.1| hypothetical membrane protein [Desulfotalea psychrophila LSv54]
Length = 283
Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 62/169 (36%), Positives = 95/169 (56%)
Query: 154 ILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGG 213
I G G+ P + R+ + R +PDA+DLL++CVE+G+ ID A+RRVA++I
Sbjct: 108 IFAGIFGYFLPVFRLKIRGHYRRKELDRTFPDAIDLLMVCVEAGMGIDSAIRRVAQEIHI 167
Query: 214 QSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLR 273
S L++E + EL R +N RT + + N LIQ+ +YGT + ++LR
Sbjct: 168 TSPELAKEFKILSLELKTGKPRNECLKNLAKRTNLRDIDNLVSLLIQAQKYGTGVANALR 227
Query: 274 VLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
+ E R +R E+ AA L KL +P+I F P L LVI+GPA++ +
Sbjct: 228 IHAEEMRQKRYSRLEEMAAKLPVKLVIPLIFFIFPALFLVILGPAMIRV 276
>gi|114800177|ref|YP_759874.1| putative Flp pilus assembly protein TadC [Hyphomonas neptunium ATCC
15444]
gi|114740351|gb|ABI78476.1| putative Flp pilus assembly protein TadC [Hyphomonas neptunium ATCC
15444]
Length = 310
Score = 120 bits (301), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 71/226 (31%), Positives = 126/226 (55%), Gaps = 3/226 (1%)
Query: 101 KLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVG 160
KL AGF ++ + R I +I + F L EYP + V A I++ G
Sbjct: 87 KLNQAGFTGAKAVPRYFLARF---ICVVIPQVALFFALPYLQEYPRYVPVMASIILVLAG 143
Query: 161 FCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSE 220
AP ++ + +R+ + +PD +DL++ CVE+G+S+D +++RV E++ + ++
Sbjct: 144 LAAPGKFLDMRISQRKQACSSGFPDMMDLMVACVEAGLSLDASVQRVGEELELRHPIIAG 203
Query: 221 EMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETR 280
M EL +R++A+ F R +D + L Q++ GTS+G +LRV ++ R
Sbjct: 204 HMRTLSLELRAGKSRKMAWRAFAERLGIDEAGSLATMLRQAEEMGTSLGQTLRVFSADMR 263
Query: 281 SERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
R++ AE+KA +L K+T+P+IIF PVL+ V+I PA++ ++ T+
Sbjct: 264 QRRILMAEEKAMALPAKMTLPLIIFVFPVLLGVLILPAVVMLMTTL 309
>gi|83720640|ref|YP_442975.1| type II secretion system protein F [Burkholderia thailandensis
E264]
gi|83654465|gb|ABC38528.1| Bacterial type II secretion system protein F domain [Burkholderia
thailandensis E264]
Length = 290
Score = 120 bits (301), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 74/229 (32%), Positives = 127/229 (55%), Gaps = 5/229 (2%)
Query: 97 NIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILI 156
+ +L +AGFR +++++ ++LVV + ++ ++ +Y F LRV +++
Sbjct: 60 KLAARLASAGFRERRAVSVMAGLKLVVGACAGLAALVVGAHVPRVGDY-FVLRV--LMMA 116
Query: 157 G--YVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQ 214
G +G P + V +RQ +I PDALDLL+IC +G S+ A+RRVA ++G
Sbjct: 117 GAFVIGMMLPEHALGFAVARRQKTIAAYLPDALDLLVICTNAGNSLAVAIRRVASELGTI 176
Query: 215 SVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRV 274
PL++E + EL + A R + +R L+QS +YGT I SLR+
Sbjct: 177 CPPLADEFSVCADELQIGGDAAFALNAMAARIGLPSMRALVTTLVQSQQYGTPITQSLRM 236
Query: 275 LVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSII 323
L R+ +++ E+KAA L PK+T+PM++F +P + L+ GPA++ +I
Sbjct: 237 LSRTERAMQMIALEEKAAKLAPKMTLPMMLFVMPTVALIAAGPAVIRLI 285
>gi|257139199|ref|ZP_05587461.1| type II secretion system protein F [Burkholderia thailandensis
E264]
Length = 314
Score = 120 bits (301), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 73/227 (32%), Positives = 124/227 (54%), Gaps = 1/227 (0%)
Query: 97 NIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILI 156
+ +L +AGFR +++++ ++LVV + ++ ++ +Y F LRV +
Sbjct: 84 KLAARLASAGFRERRAVSVMAGLKLVVGACAGLAALVVGAHVPRVGDY-FVLRVLMMAGA 142
Query: 157 GYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSV 216
+G P + V +RQ +I PDALDLL+IC +G S+ A+RRVA ++G
Sbjct: 143 FVIGMMLPEHALGFAVARRQKTIAAYLPDALDLLVICTNAGNSLAVAIRRVASELGTICP 202
Query: 217 PLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLV 276
PL++E + EL + A R + +R L+QS +YGT I SLR+L
Sbjct: 203 PLADEFSVCADELQIGGDAAFALNAMAARIGLPSMRALVTTLVQSQQYGTPITQSLRMLS 262
Query: 277 SETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSII 323
R+ +++ E+KAA L PK+T+PM++F +P + L+ GPA++ +I
Sbjct: 263 RTERAMQMIALEEKAAKLAPKMTLPMMLFVMPTVALIAAGPAVIRLI 309
>gi|264678228|ref|YP_003278135.1| type II secretion system protein [Comamonas testosteroni CNB-2]
gi|262208741|gb|ACY32839.1| type II secretion system protein [Comamonas testosteroni CNB-2]
Length = 303
Score = 120 bits (301), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 60/160 (37%), Positives = 100/160 (62%)
Query: 164 PSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEML 223
P++ + + +R+ I +PDA DL+L+CVE+G+ +D AL +V ++I +S L+EE+
Sbjct: 133 PNLVLRWMASRRKREIFENFPDAADLMLVCVEAGMGLDAALGKVTDEIRIKSEALAEELH 192
Query: 224 LTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSER 283
T E+ R+ + N RT +D + T L Q+DR+GTSIG+SLRV + R +R
Sbjct: 193 WTNLEMRAGSTREKSLRNLAARTGVDEIHTFTAMLTQADRFGTSIGESLRVFSDDLRHKR 252
Query: 284 LMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSII 323
M AE+ AA + K+ +P++ P +I+V++GPAI+ I+
Sbjct: 253 QMRAEELAAKIPTKMLLPLVTCIFPAIIMVVLGPAIIRIV 292
>gi|167620118|ref|ZP_02388749.1| Bacterial type II secretion system protein F domain [Burkholderia
thailandensis Bt4]
Length = 254
Score = 120 bits (301), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 74/229 (32%), Positives = 127/229 (55%), Gaps = 5/229 (2%)
Query: 97 NIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILI 156
+ +L +AGFR +++++ ++LVV + ++ ++ +Y F LRV +++
Sbjct: 24 KLAARLASAGFRERRAVSVMAGLKLVVGACAGLAALVVGAHVPRVGDY-FVLRV--LMMA 80
Query: 157 G--YVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQ 214
G +G P + V +RQ +I PDALDLL+IC +G S+ A+RRVA ++G
Sbjct: 81 GAFVIGMMLPEHALGFAVARRQKTIAAYLPDALDLLVICTNAGNSLAVAIRRVASELGTI 140
Query: 215 SVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRV 274
PL++E + EL + A R + +R L+QS +YGT I SLR+
Sbjct: 141 CPPLADEFSVCADELQIGGDAAFALNAMAARIGLPSMRALVTTLVQSQQYGTPITQSLRM 200
Query: 275 LVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSII 323
L R+ +++ E+KAA L PK+T+PM++F +P + L+ GPA++ +I
Sbjct: 201 LSRTERAMQMIALEEKAAKLAPKMTLPMMLFVMPTVALIAAGPAVIRLI 249
>gi|78062901|ref|YP_372809.1| type II secretion system protein [Burkholderia sp. 383]
gi|77970786|gb|ABB12165.1| type II secretion system protein [Burkholderia sp. 383]
Length = 314
Score = 120 bits (300), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 68/227 (29%), Positives = 126/227 (55%), Gaps = 1/227 (0%)
Query: 101 KLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVG 160
+L AGFR ++++++ ++L ++F I++ + +Y F +R A+I +G
Sbjct: 89 QLTRAGFRERRTVSVMIGIKLSCGVLFACGAIVFSPLIPRFGDY-FVIRALAMIAAFVIG 147
Query: 161 FCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSE 220
P + ++++R+ I +PDALDLL+IC +G S+ +RRVA ++ PL++
Sbjct: 148 VIVPEYVLGAMIRRRRRIIAACFPDALDLLVICTMAGNSLASGIRRVAHELARICPPLAD 207
Query: 221 EMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETR 280
E+ + EL+ + +F R R+ L QS R+GT I +LR L R
Sbjct: 208 ELTVCADELTLSGDVAATLTHFAMRVDFTSARSLATTLTQSQRFGTPITQALRTLSRTER 267
Query: 281 SERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
+E+++ E++AA L PK+T+PM++F LP + L+ GPA + +++ +
Sbjct: 268 TEQIVALEERAAKLAPKITLPMMLFILPTVCLIAAGPAAIRLLEVFR 314
>gi|251789651|ref|YP_003004372.1| type II secretion system protein [Dickeya zeae Ech1591]
gi|247538272|gb|ACT06893.1| type II secretion system protein [Dickeya zeae Ech1591]
Length = 318
Score = 120 bits (300), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 59/173 (34%), Positives = 103/173 (59%), Gaps = 1/173 (0%)
Query: 152 AVILIGY-VGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAED 210
A LIG+ G P W+ R + RA PDALDL+++C E+G+SI + L+ V+++
Sbjct: 141 AAALIGFFAGSLLPEAWLKMRAAGRGEKLARAVPDALDLMVVCAEAGLSIGRVLQVVSKE 200
Query: 211 IGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGD 270
+G S +++E+ T AEL L +R A ++ RT++ + + L+Q++RYGT +
Sbjct: 201 LGLSSPEMADELRYTAAELQILADRNTALQHLAERTRVSEIESMVATLLQAERYGTPLSQ 260
Query: 271 SLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSII 323
+LR + E+R L+ E+KA L +L+VP++ LP +I ++ PA+L ++
Sbjct: 261 ALRTIADESRKTLLLTLEEKAGKLPAQLSVPLMALILPPIIAIMASPALLRVV 313
>gi|299532601|ref|ZP_07045990.1| type II secretion system protein [Comamonas testosteroni S44]
gi|298719404|gb|EFI60372.1| type II secretion system protein [Comamonas testosteroni S44]
Length = 303
Score = 120 bits (300), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 61/159 (38%), Positives = 98/159 (61%)
Query: 164 PSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEML 223
P++ + + +R+ I +PDA DL+L+CVE+G+ +D AL +V E+I +S L+EE+
Sbjct: 133 PNLVLRWMALRRKREIFENFPDAADLMLVCVEAGMGLDAALGKVTEEIRIKSEALAEELH 192
Query: 224 LTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSER 283
T E+ R+ A N RT +D + T L Q+DR+GTSIG+SLRV + R +R
Sbjct: 193 WTNLEMRAGSTREKALRNLAARTGVDEIHTFTAMLTQADRFGTSIGESLRVFSDDLRHKR 252
Query: 284 LMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
M AE+ AA + K+ P++ P +I+V++GPAI+ +
Sbjct: 253 QMRAEELAAKIPTKMLFPLVTCIFPAIIMVVLGPAIIRV 291
>gi|283852078|ref|ZP_06369352.1| type II secretion system protein [Desulfovibrio sp. FW1012B]
gi|283572468|gb|EFC20454.1| type II secretion system protein [Desulfovibrio sp. FW1012B]
Length = 317
Score = 119 bits (299), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 78/230 (33%), Positives = 130/230 (56%), Gaps = 8/230 (3%)
Query: 99 VNKLRA----AGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVI 154
++K RA AGFR ++ I ++ ++ L++G + L +++ V
Sbjct: 85 LSKTRANLVHAGFRQPGAVEIYWGIKAGAGLVGLVVGAL--LALSGRLPGQYKMFVALAC 142
Query: 155 LIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQ 214
+ G GF P + + V+KRQ +I+R PDALDLL++CVE+G+ +D A+ RV ++ +
Sbjct: 143 VAG--GFYLPGLLLDARVKKRQKAIQRGLPDALDLLVVCVEAGMGLDAAIYRVCVEMASK 200
Query: 215 SVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRV 274
LS E+ L EL +R+ A +N +R ++ + + LIQ+D +GTSI +LRV
Sbjct: 201 EPVLSSELRLLTLELRAGKSRREALKNLSSRIGLEDMGSLVAMLIQTDMFGTSIAQTLRV 260
Query: 275 LVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIID 324
R++R AE+ AA L KL P+I F P L++VI+GPA++S++
Sbjct: 261 YADSMRTKRFQLAEELAAKLPVKLLFPLIFFIFPTLLIVILGPAVISLMK 310
>gi|307294432|ref|ZP_07574276.1| Type II secretion system F domain protein [Sphingobium
chlorophenolicum L-1]
gi|306880583|gb|EFN11800.1| Type II secretion system F domain protein [Sphingobium
chlorophenolicum L-1]
Length = 322
Score = 119 bits (299), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 80/254 (31%), Positives = 141/254 (55%), Gaps = 17/254 (6%)
Query: 78 KSLRNFVKKLNLKAILVDEN---IVNKLRAAGFRSEYSLNILLVVRLVV----PIIFLIL 130
K L + ++K+ + LVD N + +L AAG+ S + + RLV+ P IF+++
Sbjct: 69 KKLVDRIEKMGIS--LVDTNNAGLRRRLIAAGYMSPEAPKLFTFFRLVLTFALPAIFVVM 126
Query: 131 GIIWIFGYDKLLEYPFQLRVGAVI-LIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDL 189
+ E P L++ + L+ +G P+++IS +RQ +I +PDALDL
Sbjct: 127 AL-------SKAEPPSALKLYFIASLLAVLGLYLPNLFISAKAARRQEAIVHGFPDALDL 179
Query: 190 LLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMD 249
+L+CVE+G+ ++ A+ RV ++ +S + + EL +RQ A + +D
Sbjct: 180 MLVCVEAGLGLEAAMDRVGRELALSHPLVSAALGKVVLELRAGRSRQDALRRMADDVDVD 239
Query: 250 CVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPV 309
+R+ LIQSD+ G+S+G +LR+ +E R +R M AE+KA L L+VP++ LPV
Sbjct: 240 EIRSFATLLIQSDQLGSSVGQTLRIYAAEMREKRRMRAEEKAHRLPVLLSVPLVACMLPV 299
Query: 310 LILVIIGPAILSII 323
+I V++ PA++ ++
Sbjct: 300 MIGVLMLPAVVRVV 313
>gi|254486463|ref|ZP_05099668.1| type II secretion system protein [Roseobacter sp. GAI101]
gi|214043332|gb|EEB83970.1| type II secretion system protein [Roseobacter sp. GAI101]
Length = 320
Score = 119 bits (298), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 72/230 (31%), Positives = 128/230 (55%), Gaps = 11/230 (4%)
Query: 102 LRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWI-----FGYDKLLEYPFQLRVGAVILI 156
L +AG+RS +L I ++ VVP+ L+ G++W+ G D L+ P + +G + +
Sbjct: 95 LASAGYRSRDALLIYAFLKTVVPMAALMAGLVWLGLTTPVGIDMLI--PAAMVIGTALAL 152
Query: 157 GYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSV 216
+++ + R I+ ++PD L+L++I E+G+ AL RVA+++
Sbjct: 153 SK----GVDMYVDLRRKNRLGRIRHSFPDMLELIVITSEAGLGPQPALHRVAQEMSLSHP 208
Query: 217 PLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLV 276
L+ EML ++E++ + + A+ R + + TQ L QSDRYGT ++R L+
Sbjct: 209 ELAREMLQMVSEMAMTNDCRGAYAKMNLRVPLPEIGIFTQTLDQSDRYGTPFSRAMRTLI 268
Query: 277 SETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
E R RLM E+KAA L +T+P+I +P + +V++GPA+LS++D +
Sbjct: 269 IEQRGNRLMAIEEKAARLPVLMTLPLIFCIMPAVFVVLVGPAVLSVLDNI 318
>gi|167624197|ref|YP_001674491.1| type II secretion system protein [Shewanella halifaxensis HAW-EB4]
gi|167354219|gb|ABZ76832.1| type II secretion system protein [Shewanella halifaxensis HAW-EB4]
Length = 320
Score = 119 bits (298), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 91/329 (27%), Positives = 164/329 (49%), Gaps = 36/329 (10%)
Query: 5 FFDLFDATELAVAITTAVSIFSLIYAVVIPSLGSG---ELEKRMKSVAVEREILRKQQIT 61
FFD D + AI + +I + A+ I L SG + KR+KS+
Sbjct: 11 FFD--DPQHVEWAIYSVAAIAGVTLAISISYLISGVYSPIRKRLKSL------------- 55
Query: 62 SLQKDSASSRLRTRD-SKSLRNFVKKLNLKAILVDENIVNK--LRAAGFRSEYSLNILLV 118
++A T D + +L + + ++ K L N + L AGF SE +L +
Sbjct: 56 ----NAAEGTKVTHDVTGTLEHGMGEMAKKPFLNFSNHETRRLLIHAGFHSENALAVFNA 111
Query: 119 VRLVVPIIFLILGIIWIFGYDKLLE----YPFQLRVGAVILIGYVGFCAPSVWISNLVQK 174
RL++ ++ ++ ++ + + ++ Y F L +G F PS+ + +L +
Sbjct: 112 SRLLLILLGFVISLVILNLFPEISGIWTIYIFCLFIGG-------AFIVPSMVLQSLANR 164
Query: 175 RQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPN 234
R ++ +PDALDLL++C E+G+ + A++RVA ++ L+ E+ L +++
Sbjct: 165 RMRQLRVGFPDALDLLVVCCEAGLGLMAAMQRVARELAFSHPSLASELDLVCSKVRAGLT 224
Query: 235 RQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASL 294
+VA + F +RT ++ ++ A+ QS R GT I ++LRV E R +RL AE++AA L
Sbjct: 225 IKVALQEFTDRTGLEDIKGLNSAISQSMRLGTGIAETLRVFSDEYRDKRLQAAEEQAAKL 284
Query: 295 GPKLTVPMIIFFLPVLILVIIGPAILSII 323
K+ PM+ P +V +GPA+L ++
Sbjct: 285 AVKMIFPMMCCIWPSFFIVAVGPAVLKVM 313
>gi|86137998|ref|ZP_01056574.1| type II/IV secretion system protein, TadC subfamily protein
[Roseobacter sp. MED193]
gi|85825590|gb|EAQ45789.1| type II/IV secretion system protein, TadC subfamily protein
[Roseobacter sp. MED193]
Length = 326
Score = 119 bits (298), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 63/224 (28%), Positives = 129/224 (57%)
Query: 101 KLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVG 160
KLR AG+ S+ ++ + ++ + + L LG+ +++ + E+ Q + +I G G
Sbjct: 97 KLRQAGYHSKDAVRLFHFAQMSLGLAGLALGLFYVYVMNAGFEFDTQALMIRIIGPGGAG 156
Query: 161 FCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSE 220
+ P W++ + +R+ I+ +PD+LD++L+CVE+G S+DQ++ RVA ++ L
Sbjct: 157 YMLPKYWVTRRIAERKEEIEAGFPDSLDMMLVCVEAGQSLDQSIVRVASELKASYPQLDY 216
Query: 221 EMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETR 280
E + E+ +++ + R + + + +IQS +GTSI ++LRV SE R
Sbjct: 217 EFDIVAHEMKAGKDKEKVLRDMGTRCGVQDISSFVTVMIQSAAFGTSIAEALRVYASEMR 276
Query: 281 SERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIID 324
+R+M AE+ A L K+T+ ++ +P L+++++GP++ +I++
Sbjct: 277 DKRVMRAEEAANKLPVKMTLATMMLTVPPLLIILVGPSVKNIMN 320
>gi|86159245|ref|YP_466030.1| type II secretion system protein [Anaeromyxobacter dehalogenans
2CP-C]
gi|85775756|gb|ABC82593.1| type II secretion system protein [Anaeromyxobacter dehalogenans
2CP-C]
Length = 306
Score = 119 bits (298), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 62/182 (34%), Positives = 110/182 (60%)
Query: 145 PFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQAL 204
P + + A LI + F P++W+ VQ RQ+ + R+ PDALDLL+ CVE+G+ +D AL
Sbjct: 117 PVRTGLPAAALITGLAFFLPNLWLRARVQARQTQLDRSLPDALDLLVTCVEAGLGLDSAL 176
Query: 205 RRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRY 264
+RV++++ LS+E+ L E+ R AF RT +R+ + L Q++ +
Sbjct: 177 QRVSDEVALAHPLLSKELRLVFLEVKAGIARISAFRRMAERTGAPELRSLSATLAQTELF 236
Query: 265 GTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIID 324
GTS+G +LR+ R R+ AE+KAA + K+++P+++ LP + V++GPA++++ +
Sbjct: 237 GTSVGAALRIQAEGIRIRRMHRAEEKAAYVSVKMSLPLVLCILPCVFAVVLGPAVVNMAE 296
Query: 325 TM 326
+
Sbjct: 297 RL 298
>gi|239908016|ref|YP_002954757.1| hypothetical membrane protein [Desulfovibrio magneticus RS-1]
gi|239797882|dbj|BAH76871.1| hypothetical membrane protein [Desulfovibrio magneticus RS-1]
Length = 281
Score = 119 bits (298), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 75/218 (34%), Positives = 125/218 (57%), Gaps = 4/218 (1%)
Query: 105 AGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAP 164
AG+R +L I ++ ++ L+LG + + P Q ++ V+ + GF P
Sbjct: 59 AGYRQPSALEIYWGIKAGAALVGLVLGALAAMSG----KVPGQYKLFVVVGLTAAGFYIP 114
Query: 165 SVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLL 224
+ + + V+ RQ++I+++ PDALDLL++CVE+G+ +D A+ RV +++ + LS E+ L
Sbjct: 115 GMILDSRVKARQTAIQKSLPDALDLLVVCVEAGMGLDAAIYRVCQEMSLKDPILSAELRL 174
Query: 225 TIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERL 284
EL R+ A +N R ++ V + LIQ+D +GTSI +LRV R++R
Sbjct: 175 LTLELRAGKARREALKNLSARIGLEDVGSLVAMLIQTDMFGTSIAQTLRVYADSMRTKRF 234
Query: 285 MEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
AE+ AA L KL +P+I F P L++VI+GPA + I
Sbjct: 235 QLAEELAAKLPVKLLMPLIFFIFPTLLIVILGPAGIRI 272
>gi|212635449|ref|YP_002311973.1| Tight adherence TadC-like transmembrane protein [Shewanella
piezotolerans WP3]
gi|212556933|gb|ACJ29387.1| Tight adherence TadC-like transmembrane protein, putative
[Shewanella piezotolerans WP3]
Length = 321
Score = 119 bits (297), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 93/330 (28%), Positives = 168/330 (50%), Gaps = 37/330 (11%)
Query: 5 FFDLFDATELAVAITTAVSIFSLIYAVVIPSLGSG---ELEKRMKSVAVEREILRKQQIT 61
FFD + T + AI I + A+ I L SG L KR+K++
Sbjct: 11 FFD--NPTHVEWAIYAVAGIAGVTLAIAISYLISGFYSPLRKRLKTL------------- 55
Query: 62 SLQKDSASSRLRTRD--SKSLRNFVKKLNLKAILVDENIVNK--LRAAGFRSEYSLNILL 117
++ S + D S++L + + ++ K L N + L AGF SE SL I
Sbjct: 56 ----NTGDSGAPSGDAVSETLEHGMVEMAKKPFLNFSNHETRRLLIHAGFHSENSLAIFN 111
Query: 118 VVRLVVPIIFLILGIIWIFGYDKL----LEYPFQLRVGAVILIGYVGFCAPSVWISNLVQ 173
+RL++ ++ ++ ++ + + K+ + Y F + +G ++ PS+ + +L +
Sbjct: 112 AIRLLLLLLGAVISVLILNFFPKIAGIWIIYIFCMFIGGAFIL-------PSMVLQSLAK 164
Query: 174 KRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLP 233
+R ++ +PDALDLL++C E+G+ + AL+RVA+++ L+ E+ L +++
Sbjct: 165 RRMRLLRVGFPDALDLLVVCCEAGLGLMAALQRVAKELAFSHPSLASELELVCSKVRAGL 224
Query: 234 NRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAAS 293
+VA + F RT ++ ++ A+ QS R GT I ++LRV E R +RL AE++AA
Sbjct: 225 TIKVALQEFTERTGLEDIKGLNSAISQSMRLGTGIAETLRVFSDEYRDKRLQAAEEQAAK 284
Query: 294 LGPKLTVPMIIFFLPVLILVIIGPAILSII 323
L K+ PM+ P +V +GPA+L ++
Sbjct: 285 LAVKMIFPMMCCIWPSFFIVAVGPAVLKVM 314
>gi|21673275|ref|NP_661340.1| TadC protein [Chlorobium tepidum TLS]
gi|21646364|gb|AAM71682.1| TadC protein [Chlorobium tepidum TLS]
Length = 312
Score = 119 bits (297), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 93/329 (28%), Positives = 169/329 (51%), Gaps = 26/329 (7%)
Query: 8 LFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDS 67
+ DA + + + ++ S+++A+ L S ++KR+ + +R D
Sbjct: 1 MLDALQFLTIVLSGAAVASVVFALYNWWL-SNTVKKRLSQIVRQRWA---------PADV 50
Query: 68 ASSRLRTRDS-KSLRNFVKKLNLKAILVDENIV-NKLRAAGFRSE------YSLNILLVV 119
AS R T ++ N + KL+L + V + AG R++ Y++ LLV
Sbjct: 51 ASPRKPTPQKIDTVINILSKLSLPEEGWQSSTVRTRFLQAGIRNKNAPQYYYAVKTLLVF 110
Query: 120 RLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSI 179
L V ++FL L F KL P L + ++L G+ P + + + +KR +
Sbjct: 111 GLPV-MLFLFLR----FAQPKL---PVILFLIFMLLSAAAGYYLPEIVMDFITKKRVERM 162
Query: 180 KRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAF 239
+ + PD ++L+++C ESG+SID A+ R+++++ L++E L E+ R +
Sbjct: 163 RNSLPDMIELMVVCTESGMSIDAAIARISQEMARTHPDLAQEFYLAGLEMRAGATRIDSL 222
Query: 240 ENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLT 299
N RT +D + + LIQ++++GTS+ +SLRV R++R AE+ AA + KL
Sbjct: 223 RNMALRTSLDELHDLVSMLIQAEKFGTSMAESLRVQSEVMRTKRTQRAEELAAKIPVKLV 282
Query: 300 VPMIIFFLPVLILVIIGPAILSIIDTMKD 328
+P+ +F P L++V++GPAIL +ID +K
Sbjct: 283 LPLGLFIFPTLLIVMLGPAILQLIDVLKH 311
>gi|303248308|ref|ZP_07334570.1| Type II secretion system F domain protein [Desulfovibrio
fructosovorans JJ]
gi|302490333|gb|EFL50245.1| Type II secretion system F domain protein [Desulfovibrio
fructosovorans JJ]
Length = 314
Score = 119 bits (297), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 75/219 (34%), Positives = 128/219 (58%), Gaps = 4/219 (1%)
Query: 105 AGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAP 164
AGFR ++ I +++ ++ L++G+ ++ ++ P Q ++ A + GF P
Sbjct: 92 AGFRQPGAVEIYWGLKVGAALVGLLVGV-FLAASGRI---PAQYKMFAALACVAGGFYLP 147
Query: 165 SVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLL 224
V + + V+KRQ +I PDALDLL++CVE+G+ +D A+ RV ++ + LS E+ L
Sbjct: 148 GVVLDSRVKKRQKAILHGLPDALDLLVVCVEAGMGLDAAIYRVCLEMTHKEPILSSELRL 207
Query: 225 TIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERL 284
EL +R+ A +N NR ++ + + LIQ+D +GTSI +LRV R++R
Sbjct: 208 LTLELRAGKSRREALKNLSNRVGLEDMGSLVAMLIQTDMFGTSIAQTLRVYADSMRTKRF 267
Query: 285 MEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSII 323
AE+ AA L KL P+++F P L++VI+GPA +S++
Sbjct: 268 QLAEELAAKLPVKLLFPLVLFIFPTLLIVILGPAGISLM 306
>gi|50119739|ref|YP_048906.1| putative type IV pilus protein [Pectobacterium atrosepticum
SCRI1043]
gi|49610265|emb|CAG73708.1| putative type IV pilus protein [Pectobacterium atrosepticum
SCRI1043]
Length = 319
Score = 119 bits (297), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 69/224 (30%), Positives = 123/224 (54%), Gaps = 13/224 (5%)
Query: 105 AGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVG----AVILIGY-V 159
AG R ++ L++ + FL + ++W + P R G A LIG+ V
Sbjct: 99 AGLRRNEAVGWLVMGKFAAGA-FLAIALVWGW-------LPPADRAGLTGVAAGLIGFFV 150
Query: 160 GFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLS 219
G P W+ R + RA PDALDL+++C E+G+ I + L+ V++++G S ++
Sbjct: 151 GSMVPEWWLKWRAASRGEKLARAVPDALDLMVVCAEAGLPIGRVLQVVSKELGLSSPEMA 210
Query: 220 EEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSET 279
+E+ T AEL L +R +A ++ RT++ + + LIQ++RYGT + +LR + E+
Sbjct: 211 DELHYTAAELQILSDRTLAMKHLAERTRVSEIESMVATLIQAERYGTPLSQALRTIADES 270
Query: 280 RSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSII 323
R ++ E+KA L +L+VP++ LP +I ++ PA++ +I
Sbjct: 271 RKTLILGLEEKAGKLPAQLSVPLMALILPPIIAIMASPALVRVI 314
>gi|253687073|ref|YP_003016263.1| type II secretion system protein [Pectobacterium carotovorum subsp.
carotovorum PC1]
gi|251753651|gb|ACT11727.1| type II secretion system protein [Pectobacterium carotovorum subsp.
carotovorum PC1]
Length = 319
Score = 119 bits (297), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 68/224 (30%), Positives = 123/224 (54%), Gaps = 13/224 (5%)
Query: 105 AGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVG----AVILIGY-V 159
AG R ++ L++ + +F I ++W + P R G A LIG+ V
Sbjct: 99 AGIRRNEAVGWLVMGKFAAGALFAI-ALVWGW-------LPPADRAGLTGVAAGLIGFFV 150
Query: 160 GFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLS 219
G P W+ R + RA PDALDL+++C E+G+ I + L+ V++++G S ++
Sbjct: 151 GSMVPEWWLKWRAASRGEKLARAVPDALDLMVVCAEAGLPIGRVLQVVSKELGLSSPEMA 210
Query: 220 EEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSET 279
+E+ T AEL L +R +A ++ RT++ + + LIQ++RYGT + +LR + E+
Sbjct: 211 DELHYTAAELQILSDRTLAMKHLAERTRVSEIESMVATLIQAERYGTPLSQALRTIADES 270
Query: 280 RSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSII 323
R ++ E+KA L +L+VP++ LP +I ++ PA++ ++
Sbjct: 271 RKTLILSLEEKAGKLPAQLSVPLMALILPPIIAIMASPALVRVV 314
>gi|163846103|ref|YP_001634147.1| type II secretion system protein [Chloroflexus aurantiacus J-10-fl]
gi|222523838|ref|YP_002568308.1| type II secretion system protein [Chloroflexus sp. Y-400-fl]
gi|163667392|gb|ABY33758.1| type II secretion system protein [Chloroflexus aurantiacus J-10-fl]
gi|222447717|gb|ACM51983.1| type II secretion system protein [Chloroflexus sp. Y-400-fl]
Length = 311
Score = 118 bits (296), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 75/250 (30%), Positives = 134/250 (53%), Gaps = 12/250 (4%)
Query: 78 KSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPII-FLILGIIWIF 136
+SL N + + LK E + L+ AG S N+ + +R+ + I+ F+++G++ +F
Sbjct: 64 RSLLNTLGRFGLKQ--NQERLRINLQLAGNPGNISPNMFIGLRMALAIVLFVVIGLL-VF 120
Query: 137 GYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVES 196
G PF + ++ G +G+ P +W+ +++R+ +I +A PDALDLL I VE+
Sbjct: 121 G-----RLPFMQALMGALIAGMIGYILPGIWLDRKIKERKKNILKALPDALDLLCISVEA 175
Query: 197 GISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQ 256
G++ D AL+RVA+ + LS E + ++ R+ A + RT ++ V+
Sbjct: 176 GLAFDLALQRVAQKWDNE---LSREFQRVLQDIRLGRTRREALRDLVTRTGVEDVQTFVS 232
Query: 257 ALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIG 316
A+IQ+D+ G S+ LR+ + R R AE+ A K+ +PM+ P L +VI+G
Sbjct: 233 AVIQADQLGVSMSKILRIQSDQLRVRRRQRAEEAAQKAPVKMLIPMVFLIFPALFVVILG 292
Query: 317 PAILSIIDTM 326
PA+ I+ +
Sbjct: 293 PAVPRIMQAL 302
>gi|227326306|ref|ZP_03830330.1| putative type IV pilus protein [Pectobacterium carotovorum subsp.
carotovorum WPP14]
Length = 319
Score = 118 bits (296), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 69/224 (30%), Positives = 123/224 (54%), Gaps = 13/224 (5%)
Query: 105 AGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVG----AVILIGY-V 159
AG R ++ L++ + +F I ++W + P R G A LIG+ V
Sbjct: 99 AGIRRSEAVGWLVMGKFAAGALFAI-ALVWGW-------LPPADRAGLTGVAAGLIGFFV 150
Query: 160 GFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLS 219
G P W+ R + RA PDALDL+++C E+G+ I + L+ V++++G S ++
Sbjct: 151 GSMVPEWWLKWRAASRGEKLARAVPDALDLMVVCAEAGLPIGRVLQVVSKELGLSSPEMA 210
Query: 220 EEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSET 279
+E+ T AEL L +R +A ++ RT++ + + LIQ++RYGT + +LR + E+
Sbjct: 211 DELHYTAAELQILSDRTLAMKHLAERTRVSEIESMVATLIQAERYGTPLSQALRTIADES 270
Query: 280 RSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSII 323
R ++ E+KA L +L+VP++ LP +I ++ PA++ +I
Sbjct: 271 RKTLILGLEEKAGKLPAQLSVPLMALILPPIIAIMASPALVRVI 314
>gi|294140782|ref|YP_003556760.1| Flp pilus assembly protein TadC [Shewanella violacea DSS12]
gi|293327251|dbj|BAJ01982.1| Flp pilus assembly protein TadC [Shewanella violacea DSS12]
Length = 322
Score = 118 bits (296), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 64/180 (35%), Positives = 103/180 (57%), Gaps = 7/180 (3%)
Query: 144 YPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQA 203
Y L VG L+ PS+ + NL +R ++ +PDALDLL++C E+G+ + A
Sbjct: 143 YVVALLVGGAYLL-------PSMVLQNLASRRMKELRAGFPDALDLLVVCCEAGLGLLAA 195
Query: 204 LRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDR 263
L+RVA ++ V L+ E+ L +++ +VA + F +RT +D ++ A+ QS R
Sbjct: 196 LQRVANELAISHVSLASELDLVCSKVRAGLTIKVALQEFTDRTGLDDIKGLNSAISQSIR 255
Query: 264 YGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSII 323
GT I +LRV E R +RL EAE++AA L K+ PM++ P +V +GPA+L ++
Sbjct: 256 LGTGIAATLRVFSDEYRDKRLQEAEEQAAKLAVKMIFPMMLGIWPSFFIVAVGPAVLKVM 315
>gi|56697924|ref|YP_168295.1| TadC family type II/IV secretion system protein [Ruegeria pomeroyi
DSS-3]
gi|56679661|gb|AAV96327.1| type II/IV secretion system protein, TadC subfamily [Ruegeria
pomeroyi DSS-3]
Length = 326
Score = 118 bits (295), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 68/224 (30%), Positives = 130/224 (58%)
Query: 101 KLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVG 160
KLR AG++S+ ++ ++ + ++ L+LG++++F + + Q + V+ G
Sbjct: 97 KLRQAGYQSKDAVRFFHFAQMALGLVGLVLGVLYVFVIEADKDLDGQAMLIRVLGPGGAA 156
Query: 161 FCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSE 220
+ P WI+ V R+ +I RA+PDALD+LL+CVE+G S+DQ++ RV++++ L++
Sbjct: 157 YFLPRYWITRRVDTRKENITRAFPDALDMLLVCVEAGQSLDQSIVRVSKELRASYPDLAD 216
Query: 221 EMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETR 280
E + E+ + + R + V + +IQS ++GTSI ++LRV E R
Sbjct: 217 EFEMVAYEMKAGKEKDKVLRDMGTRCGVVDVSSFVTVMIQSSQFGTSIAEALRVYAGEMR 276
Query: 281 SERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIID 324
+R+M AE+ A L K+T+ ++ +P L+++++GP+ I+D
Sbjct: 277 DKRVMRAEEAANKLPTKMTLATMMLTVPPLLIILVGPSAKGIMD 320
>gi|209515956|ref|ZP_03264817.1| type II secretion system protein [Burkholderia sp. H160]
gi|209503614|gb|EEA03609.1| type II secretion system protein [Burkholderia sp. H160]
Length = 316
Score = 118 bits (295), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 75/226 (33%), Positives = 125/226 (55%), Gaps = 7/226 (3%)
Query: 105 AGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLR---VGAVILIGYVGF 161
AGFR ++++++ +L+ +F + I+ ++ EY F R +G V ++G +
Sbjct: 95 AGFRERRAVSMMIGFKLLAGALFALAAIVIGPYVPRIGEY-FVFRALMMGGVFIVGMI-- 151
Query: 162 CAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEE 221
P + ++ L+ +RQ +I PDALDLL+IC +G S+ ++RVA ++ PL++E
Sbjct: 152 -LPEIALNALISRRQKAIASCLPDALDLLVICTNAGNSLVVGVKRVARELETICPPLADE 210
Query: 222 MLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRS 281
+ EL + A N R + VR LIQS +YGT I SLR+L R+
Sbjct: 211 FAVAGDELQVSGDSAGALRNLAARIGLPSVRALVTTLIQSQQYGTPITHSLRMLSRAERT 270
Query: 282 ERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
++M E+KAA L K+T+PM++F LP + L+ GPA++ +I K
Sbjct: 271 AQMMALEEKAAKLATKMTMPMMLFILPTVGLIAAGPAVIRLIAVFK 316
>gi|149175288|ref|ZP_01853910.1| probable secretion system protein TadC [Planctomyces maris DSM
8797]
gi|148845897|gb|EDL60238.1| probable secretion system protein TadC [Planctomyces maris DSM
8797]
Length = 308
Score = 118 bits (295), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 79/276 (28%), Positives = 150/276 (54%), Gaps = 14/276 (5%)
Query: 55 LRKQQITSLQKDSAS-SRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSL 113
LR + + +D+ S S L + + +L K L K+ L + + +L AG+ SE +
Sbjct: 40 LRNPHLRNNPEDANSASSLFEKAAPALS---KALTPKSELEENQLKVRLANAGYNSEAAP 96
Query: 114 NILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVG---AVILIGYVGFCAPSVWISN 170
+I L +++ + ++ ++LG + F Y F + ++++ G +GF P + +
Sbjct: 97 SIFLSLKVALGLLGVVLGSGYGF-------YNFGMTQNGWTSLVIAGGIGFYLPEIALRL 149
Query: 171 LVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELS 230
L++ R I + PDALDLL++CVE+G+ +D A+RRV+E++ + + E L +L
Sbjct: 150 LIKGRVERIFLSLPDALDLLVVCVEAGLGLDAAMRRVSEELEETAPDVCSEFALCNLQLQ 209
Query: 231 FLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKK 290
R+ + R+ +D +R LIQ+D++G+SI +LRV R +R AE++
Sbjct: 210 MGRPRREVLHDLGIRSGVDDMRALAAILIQADKFGSSIAQALRVQSDSMRVKRSQLAEEQ 269
Query: 291 AASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
AA K+ P+++F P + +V++GPA + +I+ +
Sbjct: 270 AAMTAVKMIFPLVLFIFPGIFVVLVGPAAIMMINGL 305
>gi|82703469|ref|YP_413035.1| type II secretion system protein [Nitrosospira multiformis ATCC
25196]
gi|82411534|gb|ABB75643.1| type II secretion system protein [Nitrosospira multiformis ATCC
25196]
Length = 313
Score = 118 bits (295), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 61/163 (37%), Positives = 100/163 (61%)
Query: 160 GFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLS 219
G+ P++ + LV +R+ + ++PDA+DL+ +CVE+G+ +D A+ RVAE++ +S L+
Sbjct: 140 GYYLPNLVLGRLVLQRKRELFESFPDAIDLMTVCVEAGLGLDAAMVRVAEEMRLRSKALA 199
Query: 220 EEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSET 279
E+ L EL R+ A N RT ++ + L+Q+DR+GTS+ SLRV
Sbjct: 200 SELHLVSLELRAGRTREQALRNLAMRTGVEEIEALVSMLVQADRFGTSVAASLRVHSDTL 259
Query: 280 RSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
R+ R + AE+ AA + KL P+I F P L+LV++GPA ++I
Sbjct: 260 RTTRRLRAEEAAAKIALKLLFPLIFFIFPSLLLVLMGPAFINI 302
>gi|167842403|ref|ZP_02469087.1| bacterial type II secretion system protein F domain [Burkholderia
thailandensis MSMB43]
Length = 244
Score = 117 bits (294), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 72/229 (31%), Positives = 125/229 (54%), Gaps = 5/229 (2%)
Query: 97 NIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILI 156
+ +L +AGFR +++++++ ++LVV + ++ + +Y LRV +++
Sbjct: 14 KLAARLASAGFRECHAVSVMVGLKLVVGACAGLAALVVGAHVPRAGDY-VVLRV--LMMA 70
Query: 157 G--YVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQ 214
G +G P + V +RQ +I PDALDLL+IC +G S+ A+RRVA ++
Sbjct: 71 GAFVIGMMLPEHALGFAVARRQKTIAAYLPDALDLLVICTNAGNSLSVAIRRVASELKTI 130
Query: 215 SVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRV 274
PL++E + EL A R + +R L+QS +YGT I SLR+
Sbjct: 131 CPPLADEFSVCANELQIGGEPAFALNAMAARIGLPSMRALVTTLVQSQQYGTPITQSLRM 190
Query: 275 LVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSII 323
L R+ +++ E+KAA L PK+T+PM++F +P + L+ GPA++ +I
Sbjct: 191 LSRTERAMQMIALEEKAAKLAPKMTLPMMLFVMPTVALIAAGPAVIRLI 239
>gi|220918108|ref|YP_002493412.1| type II secretion system protein [Anaeromyxobacter dehalogenans
2CP-1]
gi|219955962|gb|ACL66346.1| type II secretion system protein [Anaeromyxobacter dehalogenans
2CP-1]
Length = 319
Score = 117 bits (294), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 70/226 (30%), Positives = 128/226 (56%), Gaps = 4/226 (1%)
Query: 101 KLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVG 160
+L GFR +++++ L ++L + + L+ + + +E F + +L G
Sbjct: 91 RLEQGGFRGPHAVSVHLALKLTLAVGLLLTFLFVNAHRAERIEPAFVV----AVLAFAAG 146
Query: 161 FCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSE 220
F P + +++ + RQ +++R PDALDLL+ CVE+G+ +D +++RV+E+I L+
Sbjct: 147 FYLPDLLLTSRISSRQLTLERGLPDALDLLVTCVEAGLGLDASVQRVSEEIHRAWPQLAT 206
Query: 221 EMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETR 280
E+ T E+ R AF RT + +++ + L Q++ +GTS+ +LRV R
Sbjct: 207 ELRTTFLEVKAGIPRIEAFRRLATRTGVKDLKSLSATLAQTEIFGTSVALALRVQSDGMR 266
Query: 281 SERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
R+ AE+KAA + K+T+P+I+ LP L+ VI+GPAI+ I+ +
Sbjct: 267 VRRMHRAEEKAAYVSVKMTLPLILCILPSLLAVIMGPAIIGIMRAL 312
>gi|186474108|ref|YP_001861450.1| type II secretion system protein [Burkholderia phymatum STM815]
gi|184196440|gb|ACC74404.1| type II secretion system protein [Burkholderia phymatum STM815]
Length = 323
Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 71/163 (43%), Positives = 105/163 (64%)
Query: 160 GFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLS 219
GF P+V +S LV+ RQ +I PDALDL+ +CVE+G+ +D A++RVAE+IG +S L
Sbjct: 149 GFYLPNVVLSRLVEARQRTIFEDLPDALDLMTVCVEAGLGLDAAMQRVAEEIGVKSRALK 208
Query: 220 EEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSET 279
+E+ L + EL R A N RT ++ + T LIQ+DR+GTS+GDSLRV +
Sbjct: 209 DELELVLLELRAGSARDKALRNLALRTGVEDIDTLTSMLIQADRFGTSVGDSLRVFIDAL 268
Query: 280 RSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
R+ R + AE++AA + KL P++ P LI+V+IGPA + +
Sbjct: 269 RTRRRLRAEEQAAKIALKLLFPLMFCIFPTLIVVLIGPAAMRV 311
>gi|83950071|ref|ZP_00958804.1| type II/IV secretion system protein, TadC subfamily protein
[Roseovarius nubinhibens ISM]
gi|83837970|gb|EAP77266.1| type II/IV secretion system protein, TadC subfamily protein
[Roseovarius nubinhibens ISM]
Length = 323
Score = 117 bits (293), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 58/174 (33%), Positives = 109/174 (62%)
Query: 153 VILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIG 212
+++ G +G+ AP W++ Q+RQ I+ +PD+LD++L+CVE+G S+DQ++ RV+E+I
Sbjct: 144 ILVPGAIGYLAPKYWVTKRQQQRQEEIQDGFPDSLDMMLVCVEAGQSMDQSIVRVSEEIR 203
Query: 213 GQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSL 272
L++E L ++ ++ +R + + + L+QS +GTS+GD+L
Sbjct: 204 ASYPALADEYQLVAQQIKAGRDKASVLNEMGDRCGVQDISSFVTVLVQSQTFGTSVGDAL 263
Query: 273 RVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
RV +E R +R+M AE+KA + K+T+ + +P L+++++GP++L I+D M
Sbjct: 264 RVYAAEMRDKRVMRAEEKANKIPTKMTLCTMGLTVPPLLIILVGPSVLGIMDLM 317
>gi|78357408|ref|YP_388857.1| hypothetical protein Dde_2365 [Desulfovibrio desulfuricans subsp.
desulfuricans str. G20]
gi|78219813|gb|ABB39162.1| conserved hypothetical protein [Desulfovibrio desulfuricans subsp.
desulfuricans str. G20]
Length = 324
Score = 117 bits (293), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 79/287 (27%), Positives = 147/287 (51%), Gaps = 9/287 (3%)
Query: 39 GELEKRMKSVAVEREI---LRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVD 95
G L R ++ ++R + + +I+ +Q + + + R + + L + + + + +
Sbjct: 28 GLLNGRQRAKQLQRRVRHHISPTRISGMQSAADTQQGRQQLTAKLNDLMSTIGERLAPRN 87
Query: 96 ENIVNK----LRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVG 151
E + + L AG+RS + IL + ++ L G++ + + P +
Sbjct: 88 EEQMGQTNLALVRAGYRSRKAPLILWGAKAGCMLLGLTCGLLIRLAAGETI--PAGMLAL 145
Query: 152 AVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDI 211
I +G P W+S+ V+ R+ ++ + PDALDLL++CVE+G+ +DQA+ RVA ++
Sbjct: 146 LFICPAVLGLYLPDAWVSSKVRTRRRLMEDSLPDALDLLVVCVEAGMGLDQAIGRVAREL 205
Query: 212 GGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDS 271
S L EE+ + ++EL R + +N +R ++ V + +IQ+D +GTSI +
Sbjct: 206 SLSSPVLGEELSMLVSELRAGKTRSESLKNLAHRVGLEDVNSLVTLIIQADAFGTSIAHT 265
Query: 272 LRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPA 318
LRV R+ R AE+ AA + KL P++ LP L + I+GPA
Sbjct: 266 LRVYSDTMRTTRFQRAEEIAAKMPVKLLFPLVFCILPALFVAIMGPA 312
>gi|253701804|ref|YP_003022993.1| type II secretion system protein [Geobacter sp. M21]
gi|251776654|gb|ACT19235.1| type II secretion system protein [Geobacter sp. M21]
Length = 302
Score = 117 bits (293), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 76/234 (32%), Positives = 122/234 (52%), Gaps = 15/234 (6%)
Query: 95 DENIVNKLRAAGFRSEYSLNIL---LVVRLVVPIIFLILGII---WIFGYDKLLEYPFQL 148
+ V L AAGFR + L L++ V+P+I+L+ F LL
Sbjct: 73 ESKYVKALVAAGFRKDAFYRFLGAKLLLAGVLPLIYLLAVATPTRTFFTTQTLL------ 126
Query: 149 RVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVA 208
A G +G+ AP+ W+ V+ RQ I PD LDL+ +CVE+G+S+D AL R
Sbjct: 127 ---ATAFFGIIGYLAPTYWLHLKVKARQLEIFHTLPDILDLVTLCVEAGLSMDAALIRTT 183
Query: 209 EDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSI 268
E + PL+ E+ E+ R + ++ RT+++ + + T + Q++R+GTS+
Sbjct: 184 ETPQFRDNPLAIEIRQVTMEVRAGKPRVESLKDMALRTRVEDIGSFTTMVTQAERFGTSL 243
Query: 269 GDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
+LR E R++R AE+ AA KL P+I+F P L++VI+GPA++ I
Sbjct: 244 SHALRTFSDELRTKRRQTAEEAAAKTTIKLIFPLIMFIFPALLVVILGPAVVQI 297
>gi|84685156|ref|ZP_01013055.1| Putative Flp pilus assembly protein TadC [Maritimibacter
alkaliphilus HTCC2654]
gi|84666888|gb|EAQ13359.1| Putative Flp pilus assembly protein TadC [Rhodobacterales bacterium
HTCC2654]
Length = 329
Score = 117 bits (292), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 89/293 (30%), Positives = 145/293 (49%), Gaps = 33/293 (11%)
Query: 65 KDSASSRLR----------TRDSKSLRNFVKKLNLKAILVDE-----NIVNKLRAAGFRS 109
+D A+ R+R RD + + + LKA++ +E I ++LR AGF
Sbjct: 41 RDPAAERMRAASAAYGRAANRDLLKTPDALPEGMLKALIPEERAERTQIRDQLRRAGFGG 100
Query: 110 EYSLNILLVVRLVV----PIIFLIL-------GIIWIFGYDKL---LEYPFQLRVGAVIL 155
+L V+RL++ P+I L L G+ W DKL L + R+ V +
Sbjct: 101 PNALRNFFVLRLILATAAPVIALALTALNMSIGLPWFL--DKLVGGLTFISASRL--VAI 156
Query: 156 IGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQS 215
+GF +P++W+ ++ RQ+ I+ +P+ALDLL I E+G+ D A+ RV + + S
Sbjct: 157 CTAIGFWSPTIWLKRKIRARQAEIEAGFPNALDLLQISTEAGMGFDAAMTRVGQSLATVS 216
Query: 216 VPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVL 275
+SEE LL AE+ +R+ A + R + V Q + QS YGTSI +L
Sbjct: 217 PAISEEFLLCQAEILASRDRRQALADMAERMGVAEVSAFAQVVSQSMEYGTSIAKALNAY 276
Query: 276 VSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMKD 328
+E R R M+A +KA L +++ M + LP L L+ +GP ++ + D
Sbjct: 277 AAEMREMREMKAIEKANRLPVQMSGVMSVMMLPALFLITLGPTVIRYLSVFGD 329
>gi|322434108|ref|YP_004216320.1| Type II secretion system F domain protein [Acidobacterium sp.
MP5ACTX9]
gi|321161835|gb|ADW67540.1| Type II secretion system F domain protein [Acidobacterium sp.
MP5ACTX9]
Length = 302
Score = 117 bits (292), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 68/231 (29%), Positives = 127/231 (54%), Gaps = 13/231 (5%)
Query: 94 VDEN--IVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVG 151
++EN + + + AGFR+ + +I RL+ P ++ GII P Q +V
Sbjct: 74 MNENAKLSERFQGAGFRTASARDIYFAARLIGPAAAIVFGII----------MP-QNKVF 122
Query: 152 AVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDI 211
++++G + + AP + +S +V+ R+ I+ + PD +DLL+ICV++G+ +DQA+ RV +++
Sbjct: 123 WMMMVGGILYLAPDIILSRMVKGRREKIRLSIPDMIDLLVICVDAGLGMDQAMLRVGQEL 182
Query: 212 GGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDS 271
G + EE++ E R +++ RTQ+ + L+Q++R+GT I +
Sbjct: 183 GTTHPQIYEEIMQINREQRAGKLRLESWQAMAQRTQLPEIDGFVNMLMQNERFGTPIARA 242
Query: 272 LRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
L R +R AE+ AA K+ P+++F P + +V++GPA +SI
Sbjct: 243 LSTFGDNIRQKRRQRAEELAAKTTVKIIFPLVLFIFPSMFIVLLGPAGISI 293
>gi|225181994|ref|ZP_03735426.1| type II secretion system protein [Dethiobacter alkaliphilus AHT 1]
gi|225167279|gb|EEG76098.1| type II secretion system protein [Dethiobacter alkaliphilus AHT 1]
Length = 305
Score = 117 bits (292), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 68/222 (30%), Positives = 125/222 (56%), Gaps = 13/222 (5%)
Query: 105 AGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAP 164
GF ++ L + +V +P F +L FG D L F + V + G +G+ P
Sbjct: 95 GGFSAKDYLGMKVVFAFGLPFFFYLL-----FGRD-LSPQTFLI----VAIAGVLGWRLP 144
Query: 165 SVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLL 224
+ + N + R++SI++++PD LDLL + V +G+ D AL +V E G P++EE
Sbjct: 145 EMKLENTARSRKASIEKSFPDTLDLLTVSVGAGLGFDGALAKVVEKSEG---PVAEEFRR 201
Query: 225 TIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERL 284
+ E+ R+ A +F RT +D V++ T A++Q+D+ G +IG +L+V + R +R
Sbjct: 202 VLQEIKMGKARREALRDFGERTGIDDVKSFTGAIVQADQLGLNIGKTLKVQSEQMRRKRR 261
Query: 285 MEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
E++A + K+ +P++ F P + +V++GPA++ I++T+
Sbjct: 262 QRVEEQAMKVPVKMLLPLVAFIFPTIFIVLLGPAMIQIVETL 303
>gi|163733537|ref|ZP_02140980.1| type II/IV secretion system protein, TadC subfamily, putative
[Roseobacter litoralis Och 149]
gi|161393325|gb|EDQ17651.1| type II/IV secretion system protein, TadC subfamily, putative
[Roseobacter litoralis Och 149]
Length = 327
Score = 117 bits (292), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 75/275 (27%), Positives = 140/275 (50%), Gaps = 17/275 (6%)
Query: 57 KQQITSLQKDSASSRLRTRD-SKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNI 115
K+QI + + RLR + ++ L+ F L + + LR AG++S+ ++
Sbjct: 51 KKQIQTPGSSAPEQRLRQGERNEQLQKFASFLEPQDVAELSARQLMLRQAGYQSQDAVRF 110
Query: 116 LLVVRLVVP-------IIFL-ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVW 167
+ + ++L +LG F K++ Y I+ G VG+ P W
Sbjct: 111 FHFAQFALGLAGLLLAFVYLNLLGHGEGFTTQKMMIY--------TIIPGAVGYYLPVYW 162
Query: 168 ISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIA 227
+ V R+ I R +PD+LD++L+CVE+G S+DQ + RV++++ L++E +
Sbjct: 163 VRRRVDTRKDEITRGFPDSLDMMLVCVEAGQSLDQCIVRVSKELHASYPALAQEFDVVAY 222
Query: 228 ELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEA 287
E+ ++ +F R + V + L QS ++GTSI ++LRV E R +R+M A
Sbjct: 223 EMKAGKDKTTVLNDFGERCGVQDVSSFVTVLNQSQQFGTSIAEALRVYAGEMRDKRVMRA 282
Query: 288 EKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
E+ A L K+T+ ++ +P L+++++GP++ I
Sbjct: 283 EEAANKLPTKMTLATMMLTVPPLLIILVGPSVHGI 317
>gi|163751752|ref|ZP_02158970.1| hypothetical putative tight adherence TadC-related transmembrane
protein [Shewanella benthica KT99]
gi|161328404|gb|EDP99563.1| hypothetical putative tight adherence TadC-related transmembrane
protein [Shewanella benthica KT99]
Length = 322
Score = 117 bits (292), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 70/231 (30%), Positives = 127/231 (54%), Gaps = 3/231 (1%)
Query: 93 LVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGA 152
L +++ L AG SE +L + VRL++ +I L ++ + + E + V
Sbjct: 88 LTNDDTRRLLIHAGLHSENALAVFSSVRLILLLISAGLSVLILSLFP---EISGMMSVYV 144
Query: 153 VILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIG 212
V L+ + PS+ + +L +R +++ +PDALDLL++C E+G+ + AL+RVA ++
Sbjct: 145 VALMVGGAYLLPSMVLQHLASRRMKNLRAGFPDALDLLVVCCEAGLGLLAALQRVANELA 204
Query: 213 GQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSL 272
L+ E+ L +++ +VA + F RT ++ ++ A+ QS R GT I +L
Sbjct: 205 ISHASLASELDLVCSKVRAGLTIKVALQEFTERTGLEDIKGLNSAISQSIRLGTGIAATL 264
Query: 273 RVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSII 323
R+ E R +RL +AE++AA L K+ PM++ P +V +GPA+L ++
Sbjct: 265 RIFSDEYRDKRLQDAEEQAAKLAVKMIFPMMLCIWPSFFIVAVGPAVLKVM 315
>gi|300692336|ref|YP_003753331.1| Tad secretion system, secretion accessory protein [Ralstonia
solanacearum PSI07]
gi|299079396|emb|CBJ52067.1| Tad secretion system, secretion accessory protein [Ralstonia
solanacearum PSI07]
Length = 313
Score = 116 bits (291), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 72/237 (30%), Positives = 134/237 (56%), Gaps = 10/237 (4%)
Query: 95 DENIVNKLRAAGFRSEYSLNILLVVRLVV----PIIFLILGIIWIFGYDKLLEYPFQLRV 150
D ++ + AG+R+ ++ I V+ ++ P++ L + F + L++ L V
Sbjct: 78 DSSLHTRFVHAGWRAPEAIPIYFGVKTILAFGLPVLLFPLAL-GQFDASQRLQFLTVLFV 136
Query: 151 GAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAED 210
A I GF P++ ++ ++ RQ + ++PD+LDL+++CVE+G+ +D A+ RV ++
Sbjct: 137 AAAI-----GFYLPNLVLAWKIKYRQRDVFESFPDSLDLIMVCVEAGLGLDAAILRVVDE 191
Query: 211 IGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGD 270
+ +++E L EL +R+ A +F RT +D V LIQ+DR+GTSI
Sbjct: 192 MRAARPVMAQEYELLTLELRAGLSREKALRHFAARTGVDDVSLLVAMLIQADRFGTSIAA 251
Query: 271 SLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
SLRV R++R M AE++AA +G K+ P+I P + +V++G A++ I++ ++
Sbjct: 252 SLRVHSDMLRTKRQMLAEERAAKIGTKILFPLIFCIFPSIYVVLLGSALIQIVEALR 308
>gi|309780755|ref|ZP_07675496.1| type II secretion system protein [Ralstonia sp. 5_7_47FAA]
gi|308920437|gb|EFP66093.1| type II secretion system protein [Ralstonia sp. 5_7_47FAA]
Length = 313
Score = 116 bits (291), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 61/164 (37%), Positives = 101/164 (61%)
Query: 164 PSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEML 223
P+V ++ +++R+ I A+PD+LDL+++CVE+G+ +D A+ RV ED+ ++ E
Sbjct: 145 PNVVLAMKIKRRKRDIFEAFPDSLDLIMVCVEAGLGLDSAVLRVVEDMRDARPAMAHEYE 204
Query: 224 LTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSER 283
L EL R+ A NF RT ++ V LIQ+DR+GTS+ +SLRV R++R
Sbjct: 205 LLTLELRAGLAREKALRNFAARTGVEDVSMLVAMLIQADRFGTSVAESLRVHSDMLRTKR 264
Query: 284 LMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
M AE++AA +G K+ P+I P L +V++GPA + I+ ++
Sbjct: 265 QMLAEERAAKIGTKVLFPLIFCLFPALYVVLLGPAGIQIMAGLR 308
>gi|83749633|ref|ZP_00946616.1| TRANSMEMBRANE TIGHT ADHERENCE TADC-RELATED PROTEIN; tadC1
[Ralstonia solanacearum UW551]
gi|207744163|ref|YP_002260555.1| pilus assembly protein tadc [Ralstonia solanacearum IPO1609]
gi|83723694|gb|EAP70889.1| TRANSMEMBRANE TIGHT ADHERENCE TADC-RELATED PROTEIN; tadC1
[Ralstonia solanacearum UW551]
gi|206595567|emb|CAQ62494.1| pilus assembly protein tadc [Ralstonia solanacearum IPO1609]
Length = 314
Score = 116 bits (291), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 62/176 (35%), Positives = 106/176 (60%), Gaps = 2/176 (1%)
Query: 154 ILIG--YVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDI 211
+L+G +GF P+V + +++RQ I A+PD+LDL+++CVE+G+ +D A+ RV E++
Sbjct: 133 VLLGAALIGFYLPNVLLRLKIRRRQRDIFEAFPDSLDLIMVCVEAGLGLDAAVLRVVEEM 192
Query: 212 GGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDS 271
++EE + EL R+ A N RT ++ V LIQ+DR+GTS+ +S
Sbjct: 193 RTARPAMAEEYEILTLELRAGLAREKALRNLAARTGVEDVSMLVAMLIQADRFGTSVAES 252
Query: 272 LRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
LRV R++R M AE++AA + K+ P+I P L +V++GPA + ++ ++
Sbjct: 253 LRVHSDMLRTKRHMLAEERAAKISTKILFPLIFCIFPSLFVVLLGPAAIQVVGALR 308
>gi|241662160|ref|YP_002980520.1| type II secretion system protein [Ralstonia pickettii 12D]
gi|240864187|gb|ACS61848.1| type II secretion system protein [Ralstonia pickettii 12D]
Length = 313
Score = 116 bits (291), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 61/164 (37%), Positives = 101/164 (61%)
Query: 164 PSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEML 223
P+V ++ +++R+ I A+PD+LDL+++CVE+G+ +D A+ RV ED+ ++ E
Sbjct: 145 PNVVLAMKIKRRKRDIFEAFPDSLDLIMVCVEAGLGLDSAVLRVVEDMRDARPAMAHEYE 204
Query: 224 LTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSER 283
L EL R+ A NF RT ++ V LIQ+DR+GTS+ +SLRV R++R
Sbjct: 205 LLTLELRAGLAREKALRNFAARTGVEDVSMLVAMLIQADRFGTSVAESLRVHSDMLRTKR 264
Query: 284 LMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
M AE++AA +G K+ P+I P L +V++GPA + I+ ++
Sbjct: 265 QMLAEERAAKIGTKVLFPLIFCLFPALYVVLLGPAGIQIMAGLR 308
>gi|207728101|ref|YP_002256495.1| pilus assembly protein tadc [Ralstonia solanacearum MolK2]
gi|206591346|emb|CAQ56958.1| pilus assembly protein tadc [Ralstonia solanacearum MolK2]
Length = 314
Score = 116 bits (291), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 62/176 (35%), Positives = 106/176 (60%), Gaps = 2/176 (1%)
Query: 154 ILIG--YVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDI 211
+L+G +GF P+V + +++RQ I A+PD+LDL+++CVE+G+ +D A+ RV E++
Sbjct: 133 VLLGAALIGFYLPNVLLRLKIRRRQRDIFEAFPDSLDLIMVCVEAGLGLDAAVLRVVEEM 192
Query: 212 GGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDS 271
++EE + EL R+ A N RT ++ V LIQ+DR+GTS+ +S
Sbjct: 193 RTARPAMAEEYEILTLELRAGLAREKALRNLAARTGVEDVSMLVAMLIQADRFGTSVAES 252
Query: 272 LRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
LRV R++R M AE++AA + K+ P+I P L +V++GPA + ++ ++
Sbjct: 253 LRVHSDMLRTKRHMLAEERAAKISTKILFPLIFCIFPSLFVVLLGPAAIQVVGALR 308
>gi|328952510|ref|YP_004369844.1| Type II secretion system F domain protein [Desulfobacca acetoxidans
DSM 11109]
gi|328452834|gb|AEB08663.1| Type II secretion system F domain protein [Desulfobacca acetoxidans
DSM 11109]
Length = 312
Score = 116 bits (291), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 62/171 (36%), Positives = 102/171 (59%), Gaps = 2/171 (1%)
Query: 160 GFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLS 219
G+ P+V + +R+ I + PD LDLL IC+E+G+S+D AL RV+ ++ + LS
Sbjct: 142 GYYLPAVILRRQASERRLKIWQELPDVLDLLNICIEAGLSLDSALYRVSRELRDIAPVLS 201
Query: 220 EEMLLTIAEL-SFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSE 278
E+ E+ S LP ++V E +R Q++ + L+QS R GT I +SL+V
Sbjct: 202 RELAQYFLEIQSGLPRKEV-LEKIVDRNQVNALSGVVNVLMQSSRLGTDIAESLKVYSVS 260
Query: 279 TRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMKDH 329
R+ER+ AE++ A + KLT PM + LP L+LV++GPA++ +++ + H
Sbjct: 261 LRTERMQAAEEQGAKVSTKLTFPMTMLILPALLLVVLGPAMIKMLEKLSQH 311
>gi|259418040|ref|ZP_05741959.1| type II secretion system protein [Silicibacter sp. TrichCH4B]
gi|259346946|gb|EEW58760.1| type II secretion system protein [Silicibacter sp. TrichCH4B]
Length = 323
Score = 116 bits (290), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 66/219 (30%), Positives = 123/219 (56%)
Query: 101 KLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVG 160
KLR AG++S+ ++ + ++ + + L LG+ +++ + ++Y V+ G
Sbjct: 97 KLRQAGYQSKDAVRLFHFLQFALGLSGLGLGLFFVYVMNADVDYTTNQMAMRVLGPGAAC 156
Query: 161 FCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSE 220
+ P WI+ +++R+ +I RA+PDALD++L+CVE+G S+DQA+ RV +++ L+E
Sbjct: 157 YYLPRYWITRRIEERKQAITRAFPDALDMMLVCVEAGQSLDQAIVRVGKELRASYPELAE 216
Query: 221 EMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETR 280
E + E+ + + R + V + +IQS +GTSI D+LRV E R
Sbjct: 217 EFEIVAYEMKAGKEKDKVLRDMGTRCGVQDVASFVTVMIQSAAFGTSIADALRVYAGEMR 276
Query: 281 SERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAI 319
+R+M AE+ A L K+T+ + +P L+ ++I P++
Sbjct: 277 DKRVMRAEEAANKLPTKMTLATMGLTVPPLLAILIAPSV 315
>gi|326797332|ref|YP_004315152.1| type II secretion system F domain protein [Marinomonas mediterranea
MMB-1]
gi|326548096|gb|ADZ93316.1| Type II secretion system F domain protein [Marinomonas mediterranea
MMB-1]
Length = 316
Score = 115 bits (289), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 67/219 (30%), Positives = 119/219 (54%), Gaps = 3/219 (1%)
Query: 105 AGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAP 164
AG R SL + +L V + ++ + ++ +K G++I++ F A
Sbjct: 96 AGLRHSQSLGLYTFGKLAVGLFLSVMFVFFVL--EKGDRLSLSALAGSLIILFLSSFSA- 152
Query: 165 SVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLL 224
+W+ R + + PDALDL++IC E+G+ + + + V++++ S L+EE+
Sbjct: 153 EIWLKMRAASRGGKLSSSLPDALDLMVICAEAGLPLGRIFKTVSKELAFSSPELAEEIGY 212
Query: 225 TIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERL 284
T AEL L +R A N +R +D V LIQ++RYGT + +LR + E+R +
Sbjct: 213 THAELQILSDRSKALMNLADRCGVDNVAAMVSTLIQAERYGTPLSQALRTISVESRKNMV 272
Query: 285 MEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSII 323
+E E+KA L +L+VP+++F LP +I ++ PA++ II
Sbjct: 273 LELEEKAGKLPAQLSVPLMVFILPPVIAMMGTPAMIRII 311
>gi|302391033|ref|YP_003826853.1| type II secretion system F domain protein [Acetohalobium arabaticum
DSM 5501]
gi|302203110|gb|ADL11788.1| Type II secretion system F domain protein [Acetohalobium arabaticum
DSM 5501]
Length = 306
Score = 115 bits (289), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 57/173 (32%), Positives = 99/173 (57%), Gaps = 3/173 (1%)
Query: 154 ILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGG 213
++ G+ GF P +S + +RQ +++A PD LDLL + VE+G+ D AL RV + I G
Sbjct: 134 LIFGFAGFVIPRFLLSKKISERQKKMQQALPDVLDLLTVSVEAGLGFDSALVRVVDKIAG 193
Query: 214 QSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLR 273
P+SEE + E+ R+ A + RT ++ + N A++Q+D+ G SIG LR
Sbjct: 194 ---PISEEFERLLQEIRMGKPRRDAMRDLGERTNVEDLTNFITAIVQADKLGVSIGKVLR 250
Query: 274 VLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
V + R +R AE +A K+ +P++ F P L ++++GPA + +++++
Sbjct: 251 VQSKQIRQKRRQRAEAQAMKAPIKMLLPLVFFIFPTLFIILLGPAAIKVMNSL 303
>gi|103488240|ref|YP_617801.1| type II secretion system protein [Sphingopyxis alaskensis RB2256]
gi|98978317|gb|ABF54468.1| type II secretion system protein [Sphingopyxis alaskensis RB2256]
Length = 326
Score = 115 bits (289), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 72/237 (30%), Positives = 126/237 (53%), Gaps = 20/237 (8%)
Query: 96 ENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVIL 155
+ + ++ AAG+RS ++ P I+ +L + IF L P L V L
Sbjct: 90 QGLRRRMLAAGYRSPHA-----------PKIYTLLRLALIFALPSALVLPQLLSETPVDL 138
Query: 156 ---------IGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRR 206
+ +G PS++++ +R+ I +PD LDL+L+CVE+G+ ++ AL R
Sbjct: 139 FMLYLQGAGLALMGLVIPSLFLTAKADRRRQEILNGFPDCLDLMLVCVEAGMGLEAALDR 198
Query: 207 VAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGT 266
V ++ ++E++ T EL +R+ A +R+ +D +R LIQSD+ G+
Sbjct: 199 VGREMTLSHPLVAEQISQTTLELRAGASREEALRALADRSGVDEIRAFATLLIQSDKLGS 258
Query: 267 SIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSII 323
SI +LR+ +E R +R M AE+KA L L++P++ LPV+I V++ PA++ +I
Sbjct: 259 SIATTLRIYAAEMREKRRMRAEEKAHRLPVLLSIPLVACMLPVMIGVLMLPAVIRVI 315
>gi|261820219|ref|YP_003258325.1| type II secretion system F domain protein [Pectobacterium wasabiae
WPP163]
gi|261604232|gb|ACX86718.1| Type II secretion system F domain protein [Pectobacterium wasabiae
WPP163]
Length = 319
Score = 115 bits (288), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 59/173 (34%), Positives = 103/173 (59%), Gaps = 1/173 (0%)
Query: 152 AVILIGY-VGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAED 210
A LIG+ VG P W+ R + RA PDALDL+++C E+G+ I + L+ V+++
Sbjct: 142 AAGLIGFFVGSMVPEWWLKWRAASRGEKLARAVPDALDLMVVCAEAGLPIGRVLQVVSKE 201
Query: 211 IGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGD 270
+G S +++E+ T AEL L +R +A + RT++ + + LIQ++RYGT +
Sbjct: 202 LGLSSPEMADELHYTAAELQILSDRTLAMRHLAERTRVSEIESMVATLIQAERYGTPLSQ 261
Query: 271 SLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSII 323
+LR + E+R ++ E+KA L +L+VP++ LP +I ++ PA++ +I
Sbjct: 262 ALRTIADESRKTLILGLEEKAGKLPAQLSVPLMALILPPIIAIMASPALVRVI 314
>gi|99082191|ref|YP_614345.1| type II secretion system protein [Ruegeria sp. TM1040]
gi|99038471|gb|ABF65083.1| hypothetical protein TM1040_2351 [Ruegeria sp. TM1040]
Length = 323
Score = 115 bits (288), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 65/219 (29%), Positives = 121/219 (55%)
Query: 101 KLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVG 160
KLR AG++S+ ++ + ++ + + L G+ ++ + +EY V+ G
Sbjct: 97 KLRQAGYQSKDAVRLFHFLQFALGLAGLGFGLFLVYVLNADVEYTTNQLAMRVLGPGAAA 156
Query: 161 FCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSE 220
+ P WI+ +++R+ +I RA+PDALD++L+CVE+G S+DQ++ RV +++ L+E
Sbjct: 157 YYLPRYWITRRIEERKQAITRAFPDALDMMLVCVEAGQSLDQSIVRVGKELQASYPELAE 216
Query: 221 EMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETR 280
E + E+ + + R + V + +IQS +GTSI D+LRV E R
Sbjct: 217 EFEIVAHEMKAGKEKDKVLRDMATRCGVQDVASFVTVMIQSAAFGTSIADALRVYAGEMR 276
Query: 281 SERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAI 319
+R+M AE+ A L K+T+ + +P L+ ++I P++
Sbjct: 277 DKRVMRAEEAANKLPTKMTLATMGLTVPPLLAILIAPSV 315
>gi|152994352|ref|YP_001339187.1| type II secretion system protein [Marinomonas sp. MWYL1]
gi|150835276|gb|ABR69252.1| type II secretion system protein [Marinomonas sp. MWYL1]
Length = 316
Score = 115 bits (288), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 69/223 (30%), Positives = 127/223 (56%), Gaps = 11/223 (4%)
Query: 105 AGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRV----GAVILIGYVG 160
AGFR + +L + + + II ++L ++FG +LE +L + G+++L+ + G
Sbjct: 96 AGFRRQNALGVFTFCKFSLGIICILL---FLFG---VLESGNRLSLNGLAGSLMLL-FFG 148
Query: 161 FCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSE 220
A VW+ R + + PDALDL++IC E+G+ + + + V++++ + ++E
Sbjct: 149 SFAAEVWLKMRAASRGGRLSSSLPDALDLMVICAEAGLPLGRIFKTVSKELAFSAPEIAE 208
Query: 221 EMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETR 280
E+ T AEL L +R A N R ++ V LIQ++RYGT + +LR + E+R
Sbjct: 209 ELGYTHAELQILSDRTKALLNLSERCGVENVEAMVSTLIQAERYGTPLSQALRTISEESR 268
Query: 281 SERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSII 323
+++ E+KA L +L+VP+++F LP +I ++ PA++ II
Sbjct: 269 KRLVLDLEEKAGKLPAQLSVPLMVFILPPVIAMMGTPAMIRII 311
>gi|145219378|ref|YP_001130087.1| type II secretion system protein [Prosthecochloris vibrioformis DSM
265]
gi|145205542|gb|ABP36585.1| type II secretion system protein [Chlorobium phaeovibrioides DSM
265]
Length = 313
Score = 115 bits (288), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 57/180 (31%), Positives = 103/180 (57%)
Query: 145 PFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQAL 204
PF + V+ G+ P + + + QKR ++ + PD +DL++IC ESG+ ID A+
Sbjct: 130 PFTQSMMLVLSTAAAGYYLPELALRFITQKRHERMRDSLPDMIDLMVICTESGMGIDSAI 189
Query: 205 RRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRY 264
R++ ++ + L++E L++ E+ R A N RT++ + + +Q+ ++
Sbjct: 190 ARISREMARGNPDLAQEFYLSVLEIRAGATRIEALRNLALRTRLKDMDDLVTMFVQAHKF 249
Query: 265 GTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIID 324
GT I +LRV RS R AE+ AA + K+TVP+++F P L++V++GPAI+ I++
Sbjct: 250 GTGIAQALRVQSDMLRSRRTQRAEEMAAKIPVKMTVPLVLFIFPTLLMVLLGPAIIQIME 309
>gi|78186531|ref|YP_374574.1| TadC protein [Chlorobium luteolum DSM 273]
gi|78166433|gb|ABB23531.1| TadC protein [Chlorobium luteolum DSM 273]
Length = 313
Score = 115 bits (288), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 63/225 (28%), Positives = 121/225 (53%), Gaps = 4/225 (1%)
Query: 101 KLRAAGFRSEYSLNILLVVRLVVPIIF-LILGIIWIFGYDKLLEYPFQLRVGAVILIGYV 159
K AG RS+ + V+ ++ ++ LG+ F + P + V+
Sbjct: 88 KFLQAGIRSKNAPRYYFAVKTLLTVVLPAALGLFLYFFRPGV---PLTQSLLLVLSTAAA 144
Query: 160 GFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLS 219
G+ P + + + Q+R ++ + PD +DL+++C ESG+ ID A+ R++ ++ + L+
Sbjct: 145 GYYIPELALRFITQQRHERMRNSLPDMIDLMVVCTESGMGIDSAIARISREMARGNPDLA 204
Query: 220 EEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSET 279
+E L++ E+ R A N RT + + + +Q+D++GT + +SLRV
Sbjct: 205 QEFYLSVLEIRAGATRIEALRNLALRTNLKDMNDLVTMFVQADKFGTGMAESLRVQSDML 264
Query: 280 RSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIID 324
RS R AE+ AA + K+T+P+++F P L++V++GPAI+ I++
Sbjct: 265 RSRRTQRAEEMAAKIPVKMTIPLVLFIFPTLLMVLLGPAIIQIME 309
>gi|78186665|ref|YP_374708.1| TadC protein [Chlorobium luteolum DSM 273]
gi|78166567|gb|ABB23665.1| TadC protein [Chlorobium luteolum DSM 273]
Length = 315
Score = 115 bits (287), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 105/177 (59%)
Query: 153 VILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIG 212
V+ G+ P + + + +KR ++ + PD +DL++IC ESG+ ID A+ R+++++
Sbjct: 136 VVCTAAAGYYLPEMLLGFITRKRIGRLRDSLPDMIDLMVICTESGMGIDAAITRISKEMA 195
Query: 213 GQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSL 272
G + L++E L+ E+ R A N R++++ + + L Q+DR+GTS+ +SL
Sbjct: 196 GTNPDLAQEFYLSALEIRAGATRIEALRNLALRSRLEDLDDLVSVLAQADRFGTSLAESL 255
Query: 273 RVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMKDH 329
RV RS R AE+ AA + K+ +P+I+F P L++V++GPA++ ++ + +
Sbjct: 256 RVQSDMMRSRRTQRAEELAAKIPVKMLLPLILFIFPTLMMVLLGPAVIQVMHALSNK 312
>gi|163745841|ref|ZP_02153200.1| type II/IV secretion system protein, TadC subfamily, putative
[Oceanibulbus indolifex HEL-45]
gi|161380586|gb|EDQ04996.1| type II/IV secretion system protein, TadC subfamily, putative
[Oceanibulbus indolifex HEL-45]
Length = 326
Score = 115 bits (287), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 79/260 (30%), Positives = 133/260 (51%), Gaps = 5/260 (1%)
Query: 66 DSASSRLRTRDSKS-LRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVP 124
D A +LR D + L+ F K L + + LR AG+RS ++ + + +
Sbjct: 61 DGARQQLRQSDQNAQLQKFAKFLEPEDVAELSAKQLMLRQAGYRSRDAVRLYYFAQFALG 120
Query: 125 IIFLILGIIW--IFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRA 182
I+ L+ G+++ + G + + Q + I G +G+ P W+ V R+ I R
Sbjct: 121 ILGLVGGLVYTKVLGGGEGMTT--QQTMMWAIGPGAIGYYLPKYWVRRRVDSRKEEITRG 178
Query: 183 WPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENF 242
+PDALD++L+CVE+G S+DQ + RV ++ L+EE + E+ +R +
Sbjct: 179 FPDALDMMLVCVEAGQSLDQCIVRVGRELRASYPALAEEFEMVAYEMKAGKDRITVLNDM 238
Query: 243 YNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPM 302
R + V + LIQS +GTSI D+LRV E R +R+M AE+ A L K+T+
Sbjct: 239 SERCGVQDVSSFVTVLIQSAAFGTSIADALRVYAEEMRDKRVMRAEEAANKLPTKMTLAT 298
Query: 303 IIFFLPVLILVIIGPAILSI 322
+ +P L++++IGP+ I
Sbjct: 299 MGLTVPPLLIILIGPSAHGI 318
>gi|221633000|ref|YP_002522225.1| type II secretion system protein [Thermomicrobium roseum DSM 5159]
gi|221157259|gb|ACM06386.1| type II secretion system protein [Thermomicrobium roseum DSM 5159]
Length = 303
Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 64/184 (34%), Positives = 103/184 (55%), Gaps = 5/184 (2%)
Query: 145 PFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQAL 204
P Q RVG ++ +G+ P+ W+S + +R+ +I+RA PDA+DLL+I VE+G+ DQAL
Sbjct: 124 PVQYRVGLPFVLAALGWIVPNAWLSRRIAQRKRAIQRALPDAIDLLVISVEAGLGFDQAL 183
Query: 205 RRVAEDIGGQSVPLSEEMLLTIAELSF-LPNRQVAFENFYNRTQMDCVRNATQALIQSDR 263
RV E + L+ E T++E+ +P RQ A + R +D + +L+Q+D+
Sbjct: 184 LRVVEKWDNE---LTREFARTLSEMRMGIPRRQ-ALRDLARRVNVDDLNVFIASLVQADQ 239
Query: 264 YGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSII 323
G SI LR ++ R R A++ A K+ PM+ P L +VI+GPAI I+
Sbjct: 240 LGVSISQVLRAQANQMRLRRRQRAQELAHKAPIKMIFPMVFLIFPALYVVILGPAIPRIV 299
Query: 324 DTMK 327
+ +
Sbjct: 300 EAFR 303
>gi|89899611|ref|YP_522082.1| type II secretion system protein [Rhodoferax ferrireducens T118]
gi|89344348|gb|ABD68551.1| type II secretion system protein [Rhodoferax ferrireducens T118]
Length = 312
Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 65/174 (37%), Positives = 102/174 (58%), Gaps = 4/174 (2%)
Query: 160 GFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLS 219
G+ P++ +S+LV RQ I ++PDALDL+ +CVE+G+ + A+ RVA+D+ +S L+
Sbjct: 139 GYYGPNLVLSHLVMVRQREIFESFPDALDLMTVCVEAGLGTEAAMMRVADDLQFKSPALA 198
Query: 220 EEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSET 279
+EM L EL R+ A N RT ++ V + Q++R+GTSI SLR+
Sbjct: 199 DEMRLVNLELRAGAVRERALRNLAIRTGVEEVDGFVTMISQAERFGTSIAASLRIHAELL 258
Query: 280 RSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSI----IDTMKDH 329
R+ R AE+ AA + KL P+I P L++V++GPA++ I + TM H
Sbjct: 259 RTRRRQRAEEAAAKIALKLLFPLIFCIFPSLMVVLMGPAMIQIYRVLLPTMGGH 312
>gi|296122167|ref|YP_003629945.1| type II secretion system protein [Planctomyces limnophilus DSM
3776]
gi|296014507|gb|ADG67746.1| type II secretion system protein [Planctomyces limnophilus DSM
3776]
Length = 312
Score = 114 bits (286), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 93/319 (29%), Positives = 160/319 (50%), Gaps = 25/319 (7%)
Query: 17 AITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVER------EILRKQQITSLQKDSASS 70
A ++IF+ I V +L ++ R +S A +R +LR+QQ QK+ S+
Sbjct: 6 ATIVPLAIFASITLAVFAAL---QIFSREQSRASQRLDEFNNPLLREQQRG--QKNGMSN 60
Query: 71 RLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVR---LVVPIIF 127
L K+ K L K+ L + +L AGF S + I L ++ LVV ++
Sbjct: 61 LL----EKAAPALSKALEPKSELEQSQLKIRLANAGFHSPQAPMIYLAIKTVCLVVGLVL 116
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
++ +G Q + +I+ GF P ++ L+ KR+ +I PD L
Sbjct: 117 GGGLGMYRYGTT-------QAGLTTLIIAAGAGFYLPEGVLAYLISKRKQAIFLQLPDVL 169
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQ 247
DLL++CVE+G+ +D LRRVAE++ + + E+ + +L NR+ + RT
Sbjct: 170 DLLVVCVEAGLGLDAGLRRVAEELKDTAPEICGELAMCNLQLQMGRNRRDMLHDLGVRTG 229
Query: 248 MDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFL 307
+D V+ +IQ+D++G+SI +LRV R +R AE+KA ++ PM+IF
Sbjct: 230 VDDVKALVAIMIQADKFGSSIAQALRVQSDSMRVKRRQIAEEKAQKTAVQMLFPMVIFIF 289
Query: 308 PVLILVIIGPAILSIIDTM 326
P + +V++GPA + ++D +
Sbjct: 290 PGIFVVLVGPAAIKMMDQL 308
>gi|322419939|ref|YP_004199162.1| Type II secretion system F domain-containing protein [Geobacter sp.
M18]
gi|320126326|gb|ADW13886.1| Type II secretion system F domain protein [Geobacter sp. M18]
Length = 303
Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 75/226 (33%), Positives = 120/226 (53%), Gaps = 13/226 (5%)
Query: 102 LRAAGFRSE-----YSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILI 156
L AAG++ E + ILL L P +L+ ++ K QL +GA+IL
Sbjct: 80 LVAAGYKKESVFVFFGCKILLACGL--PGFYLLFYVM-----SKGFTMNRQLILGALIL- 131
Query: 157 GYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSV 216
+G+ APS W+ + +RQ I PD LDL+ +CV++G+S+D AL + E +
Sbjct: 132 AILGYLAPSYWLYHQYNERQLKIFHTLPDILDLITVCVDAGLSMDAALIKTTETPQFAND 191
Query: 217 PLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLV 276
PL++E+ + E R + ++ RT +D VR L Q++R+GTS+ +L V
Sbjct: 192 PLAKEIKIATMETRAGKPRIESLKDMAERTMVDDVRAFVTMLSQTERFGTSLSQALSVHA 251
Query: 277 SETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
R++R AE+ AA K+ P+I+F P L++VI+GPA + I
Sbjct: 252 ESLRTKRRQMAEEAAAKTTIKMVFPLILFIFPALLVVILGPAYVQI 297
>gi|167845808|ref|ZP_02471316.1| bacterial type II secretion system protein F domain [Burkholderia
pseudomallei B7210]
gi|167894380|ref|ZP_02481782.1| bacterial type II secretion system protein F domain [Burkholderia
pseudomallei 7894]
Length = 237
Score = 114 bits (284), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 70/227 (30%), Positives = 122/227 (53%), Gaps = 1/227 (0%)
Query: 97 NIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILI 156
+ +L +AGFR +++++ ++LVV + + ++ +Y LRV +
Sbjct: 7 KLAARLASAGFREHRAVSVMAGLKLVVGACAGLAALALGAHVPRVGDY-VVLRVLMMAGA 65
Query: 157 GYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSV 216
+G P + ++ +RQ +I PDALDLL+IC +G S+ A+RRVA ++
Sbjct: 66 FVIGMMLPEHALGFVLARRQKTIAAYLPDALDLLVICTNAGNSLAVAIRRVASELKTICP 125
Query: 217 PLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLV 276
PL++E + EL + A R + +R L+QS +YGT I SLR+L
Sbjct: 126 PLADEFSVCADELQIGGDAAFALNAMAARIGLPSMRALVTTLVQSQQYGTPITQSLRMLS 185
Query: 277 SETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSII 323
R+ +++ E+KAA L PK+T+PM++F +P + L+ GPA++ +I
Sbjct: 186 RTERAMQMIALEEKAAKLAPKMTLPMMLFVMPTVALIAAGPAVIRLI 232
>gi|167911026|ref|ZP_02498117.1| bacterial type II secretion system protein F domain [Burkholderia
pseudomallei 112]
Length = 264
Score = 113 bits (283), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 70/227 (30%), Positives = 122/227 (53%), Gaps = 1/227 (0%)
Query: 97 NIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILI 156
+ +L +AGFR +++++ ++LVV + + ++ +Y LRV +
Sbjct: 34 KLAARLASAGFREHRAVSVMAGLKLVVGACAGLAALALGAHVPRVGDY-VVLRVLMMAGA 92
Query: 157 GYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSV 216
+G P + ++ +RQ +I PDALDLL+IC +G S+ A+RRVA ++
Sbjct: 93 FVIGMMLPEHALGFVLARRQKTIAAYLPDALDLLVICTNAGNSLAVAIRRVASELKTICP 152
Query: 217 PLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLV 276
PL++E + EL + A R + +R L+QS +YGT I SLR+L
Sbjct: 153 PLADEFSVCADELQIGGDAAFALNAMAARIGLPSMRALVTTLVQSQQYGTPITQSLRMLS 212
Query: 277 SETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSII 323
R+ +++ E+KAA L PK+T+PM++F +P + L+ GPA++ +I
Sbjct: 213 RTERAMQMIALEEKAAKLAPKMTLPMMLFVMPTVALIAAGPAVIRLI 259
>gi|167738668|ref|ZP_02411442.1| bacterial type II secretion system protein F domain [Burkholderia
pseudomallei 14]
Length = 253
Score = 113 bits (283), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 70/227 (30%), Positives = 122/227 (53%), Gaps = 1/227 (0%)
Query: 97 NIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILI 156
+ +L +AGFR +++++ ++LVV + + ++ +Y LRV +
Sbjct: 23 KLAARLASAGFREHRAVSVMAGLKLVVGACAGLAALALGAHVPRVGDY-VVLRVLMMAGA 81
Query: 157 GYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSV 216
+G P + ++ +RQ +I PDALDLL+IC +G S+ A+RRVA ++
Sbjct: 82 FVIGMMLPEHALGFVLARRQKTIAAYLPDALDLLVICTNAGNSLAVAIRRVASELKTICP 141
Query: 217 PLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLV 276
PL++E + EL + A R + +R L+QS +YGT I SLR+L
Sbjct: 142 PLADEFSVCADELQIGGDAAFALNAMAARIGLPSMRALVTTLVQSQQYGTPITQSLRMLS 201
Query: 277 SETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSII 323
R+ +++ E+KAA L PK+T+PM++F +P + L+ GPA++ +I
Sbjct: 202 RTERAMQMIALEEKAAKLAPKMTLPMMLFVMPTVALIAAGPAVIRLI 248
>gi|126440858|ref|YP_001058913.1| type II secretion system protein [Burkholderia pseudomallei 668]
gi|254198255|ref|ZP_04904677.1| bacterial type II secretion system protein [Burkholderia
pseudomallei S13]
gi|126220351|gb|ABN83857.1| bacterial type II secretion system protein [Burkholderia
pseudomallei 668]
gi|169654996|gb|EDS87689.1| bacterial type II secretion system protein [Burkholderia
pseudomallei S13]
Length = 314
Score = 113 bits (283), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 70/227 (30%), Positives = 122/227 (53%), Gaps = 1/227 (0%)
Query: 97 NIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILI 156
+ +L +AGFR +++++ ++LVV + + ++ +Y LRV +
Sbjct: 84 KLAARLASAGFREHRAVSVMAGLKLVVGACAGLAALALGAHVPRVGDY-VVLRVLMMAGA 142
Query: 157 GYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSV 216
+G P + ++ +RQ +I PDALDLL+IC +G S+ A+RRVA ++
Sbjct: 143 FVIGMMLPEHALGFVLARRQKTIAAYLPDALDLLVICTNAGNSLAVAIRRVASELKTICP 202
Query: 217 PLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLV 276
PL++E + EL + A R + +R L+QS +YGT I SLR+L
Sbjct: 203 PLADEFSVCADELQIGGDAAFALNAMAARIGLPSMRALVTTLVQSQQYGTPITQSLRMLS 262
Query: 277 SETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSII 323
R+ +++ E+KAA L PK+T+PM++F +P + L+ GPA++ +I
Sbjct: 263 RTERAMQMIALEEKAAKLAPKMTLPMMLFVMPTVALIAAGPAVIRLI 309
>gi|167824262|ref|ZP_02455733.1| bacterial type II secretion system protein F domain [Burkholderia
pseudomallei 9]
gi|167919042|ref|ZP_02506133.1| bacterial type II secretion system protein F domain [Burkholderia
pseudomallei BCC215]
Length = 246
Score = 113 bits (283), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 70/227 (30%), Positives = 122/227 (53%), Gaps = 1/227 (0%)
Query: 97 NIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILI 156
+ +L +AGFR +++++ ++LVV + + ++ +Y LRV +
Sbjct: 16 KLAARLASAGFREHRAVSVMAGLKLVVGACAGLAALALGAHVPRVGDY-VVLRVLMMAGA 74
Query: 157 GYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSV 216
+G P + ++ +RQ +I PDALDLL+IC +G S+ A+RRVA ++
Sbjct: 75 FVIGMMLPEHALGFVLARRQKTIAAYLPDALDLLVICTNAGNSLAVAIRRVASELKTICP 134
Query: 217 PLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLV 276
PL++E + EL + A R + +R L+QS +YGT I SLR+L
Sbjct: 135 PLADEFSVCADELQIGGDAAFALNAMAARIGLPSMRALVTTLVQSQQYGTPITQSLRMLS 194
Query: 277 SETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSII 323
R+ +++ E+KAA L PK+T+PM++F +P + L+ GPA++ +I
Sbjct: 195 RTERAMQMIALEEKAAKLAPKMTLPMMLFVMPTVALIAAGPAVIRLI 241
>gi|126454623|ref|YP_001066155.1| type II secretion system protein [Burkholderia pseudomallei 1106a]
gi|242317969|ref|ZP_04816985.1| bacterial type II secretion system protein [Burkholderia
pseudomallei 1106b]
gi|126228265|gb|ABN91805.1| bacterial type II secretion system protein [Burkholderia
pseudomallei 1106a]
gi|242141208|gb|EES27610.1| bacterial type II secretion system protein [Burkholderia
pseudomallei 1106b]
Length = 314
Score = 113 bits (283), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 70/227 (30%), Positives = 122/227 (53%), Gaps = 1/227 (0%)
Query: 97 NIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILI 156
+ +L +AGFR +++++ ++LVV + + ++ +Y LRV +
Sbjct: 84 KLAARLASAGFREHRAVSVMAGLKLVVGACAGLAALALGAHVPRVGDY-VVLRVLMMAGA 142
Query: 157 GYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSV 216
+G P + ++ +RQ +I PDALDLL+IC +G S+ A+RRVA ++
Sbjct: 143 FVIGMMLPEHALGFVLARRQKTIAAYLPDALDLLVICTNAGNSLAVAIRRVASELKTICP 202
Query: 217 PLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLV 276
PL++E + EL + A R + +R L+QS +YGT I SLR+L
Sbjct: 203 PLADEFSVCADELQIGGDAAFALNAMAARIGLPSMRALVTTLVQSQQYGTPITQSLRMLS 262
Query: 277 SETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSII 323
R+ +++ E+KAA L PK+T+PM++F +P + L+ GPA++ +I
Sbjct: 263 RTERAMQMIALEEKAAKLAPKMTLPMMLFVMPTVALIAAGPAVIRLI 309
>gi|167902780|ref|ZP_02489985.1| bacterial type II secretion system protein F domain [Burkholderia
pseudomallei NCTC 13177]
Length = 270
Score = 113 bits (283), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 70/227 (30%), Positives = 122/227 (53%), Gaps = 1/227 (0%)
Query: 97 NIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILI 156
+ +L +AGFR +++++ ++LVV + + ++ +Y LRV +
Sbjct: 40 KLAARLASAGFREHRAVSVMAGLKLVVGACAGLAALALGAHVPRVGDY-VVLRVLMMAGA 98
Query: 157 GYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSV 216
+G P + ++ +RQ +I PDALDLL+IC +G S+ A+RRVA ++
Sbjct: 99 FVIGMMLPEHALGFVLARRQKTIAAYLPDALDLLVICTNAGNSLAVAIRRVASELKTICP 158
Query: 217 PLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLV 276
PL++E + EL + A R + +R L+QS +YGT I SLR+L
Sbjct: 159 PLADEFSVCADELQIGGDAAFALNAMAARIGLPSMRALVTTLVQSQQYGTPITQSLRMLS 218
Query: 277 SETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSII 323
R+ +++ E+KAA L PK+T+PM++F +P + L+ GPA++ +I
Sbjct: 219 RTERAMQMIALEEKAAKLAPKMTLPMMLFVMPTVALIAAGPAVIRLI 265
>gi|53719426|ref|YP_108412.1| putative fimbriae-related membrane protein [Burkholderia
pseudomallei K96243]
gi|76810064|ref|YP_333441.1| putative fimbriae-related membrane protein [Burkholderia
pseudomallei 1710b]
gi|121598751|ref|YP_993001.1| type II secretion system protein F [Burkholderia mallei SAVP1]
gi|124385777|ref|YP_001026333.1| type II secretion system protein F [Burkholderia mallei NCTC 10229]
gi|126450336|ref|YP_001080393.1| type II secretion system protein F [Burkholderia mallei NCTC 10247]
gi|134282407|ref|ZP_01769112.1| bacterial type II secretion system protein [Burkholderia
pseudomallei 305]
gi|217421557|ref|ZP_03453061.1| bacterial type II secretion system protein [Burkholderia
pseudomallei 576]
gi|226196355|ref|ZP_03791937.1| bacterial type II secretion system protein [Burkholderia
pseudomallei Pakistan 9]
gi|237812170|ref|YP_002896621.1| bacterial type II secretion system protein [Burkholderia
pseudomallei MSHR346]
gi|254177530|ref|ZP_04884185.1| type II secretion system protein [Burkholderia mallei ATCC 10399]
gi|254188724|ref|ZP_04895235.1| bacterial type II secretion system protein [Burkholderia
pseudomallei Pasteur 52237]
gi|254259567|ref|ZP_04950621.1| bacterial type II secretion system protein [Burkholderia
pseudomallei 1710a]
gi|254297711|ref|ZP_04965164.1| bacterial type II secretion system protein [Burkholderia
pseudomallei 406e]
gi|254358538|ref|ZP_04974811.1| type II secretion system protein [Burkholderia mallei 2002721280]
gi|52209840|emb|CAH35812.1| putative fimbriae-related membrane protein [Burkholderia
pseudomallei K96243]
gi|76579517|gb|ABA48992.1| putative fimbriae-related membrane protein [Burkholderia
pseudomallei 1710b]
gi|121227561|gb|ABM50079.1| bacterial type II secretion system protein F domain [Burkholderia
mallei SAVP1]
gi|126243206|gb|ABO06299.1| bacterial type II secretion system F domain protein [Burkholderia
mallei NCTC 10247]
gi|134246445|gb|EBA46534.1| bacterial type II secretion system protein [Burkholderia
pseudomallei 305]
gi|148027665|gb|EDK85686.1| type II secretion system protein [Burkholderia mallei 2002721280]
gi|157807239|gb|EDO84409.1| bacterial type II secretion system protein [Burkholderia
pseudomallei 406e]
gi|157936403|gb|EDO92073.1| bacterial type II secretion system protein [Burkholderia
pseudomallei Pasteur 52237]
gi|160698569|gb|EDP88539.1| type II secretion system protein [Burkholderia mallei ATCC 10399]
gi|217395299|gb|EEC35317.1| bacterial type II secretion system protein [Burkholderia
pseudomallei 576]
gi|225931572|gb|EEH27577.1| bacterial type II secretion system protein [Burkholderia
pseudomallei Pakistan 9]
gi|237503370|gb|ACQ95688.1| bacterial type II secretion system protein [Burkholderia
pseudomallei MSHR346]
gi|254218256|gb|EET07640.1| bacterial type II secretion system protein [Burkholderia
pseudomallei 1710a]
Length = 314
Score = 113 bits (283), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 70/227 (30%), Positives = 122/227 (53%), Gaps = 1/227 (0%)
Query: 97 NIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILI 156
+ +L +AGFR +++++ ++LVV + + ++ +Y LRV +
Sbjct: 84 KLAARLASAGFREHRAVSVMAGLKLVVGACAGLAALALGAHVPRVGDY-VVLRVLMMAGA 142
Query: 157 GYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSV 216
+G P + ++ +RQ +I PDALDLL+IC +G S+ A+RRVA ++
Sbjct: 143 FVIGMMLPEHALGFVLARRQKTIAAYLPDALDLLVICTNAGNSLAVAIRRVASELKTICP 202
Query: 217 PLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLV 276
PL++E + EL + A R + +R L+QS +YGT I SLR+L
Sbjct: 203 PLADEFSVCADELQIGGDAAFALNAMAARIGLPSMRALVTTLVQSQQYGTPITQSLRMLS 262
Query: 277 SETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSII 323
R+ +++ E+KAA L PK+T+PM++F +P + L+ GPA++ +I
Sbjct: 263 RTERAMQMIALEEKAAKLAPKMTLPMMLFVMPTVALIAAGPAVIRLI 309
>gi|167719676|ref|ZP_02402912.1| bacterial type II secretion system protein F domain [Burkholderia
pseudomallei DM98]
Length = 249
Score = 113 bits (283), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 70/227 (30%), Positives = 122/227 (53%), Gaps = 1/227 (0%)
Query: 97 NIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILI 156
+ +L +AGFR +++++ ++LVV + + ++ +Y LRV +
Sbjct: 19 KLAARLASAGFREHRAVSVMAGLKLVVGACAGLAALALGAHVPRVGDY-VVLRVLMMAGA 77
Query: 157 GYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSV 216
+G P + ++ +RQ +I PDALDLL+IC +G S+ A+RRVA ++
Sbjct: 78 FVIGMMLPEHALGFVLARRQKTIAAYLPDALDLLVICTNAGNSLAVAIRRVASELKTICP 137
Query: 217 PLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLV 276
PL++E + EL + A R + +R L+QS +YGT I SLR+L
Sbjct: 138 PLADEFSVCADELQIGGDAAFALNAMAARIGLPSMRALVTTLVQSQQYGTPITQSLRMLS 197
Query: 277 SETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSII 323
R+ +++ E+KAA L PK+T+PM++F +P + L+ GPA++ +I
Sbjct: 198 RTERAMQMIALEEKAAKLAPKMTLPMMLFVMPTVALIAAGPAVIRLI 244
>gi|167821658|ref|ZP_02453338.1| bacterial type II secretion system protein F domain [Burkholderia
pseudomallei 91]
Length = 266
Score = 113 bits (283), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 70/227 (30%), Positives = 122/227 (53%), Gaps = 1/227 (0%)
Query: 97 NIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILI 156
+ +L +AGFR +++++ ++LVV + + ++ +Y LRV +
Sbjct: 36 KLAARLASAGFREHRAVSVMAGLKLVVGACAGLAALALGAHVPRVGDY-VVLRVLMMAGA 94
Query: 157 GYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSV 216
+G P + ++ +RQ +I PDALDLL+IC +G S+ A+RRVA ++
Sbjct: 95 FVIGMMLPEHALGFVLARRQKTIAAYLPDALDLLVICTNAGNSLAVAIRRVASELKTICP 154
Query: 217 PLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLV 276
PL++E + EL + A R + +R L+QS +YGT I SLR+L
Sbjct: 155 PLADEFSVCADELQIGGDAAFALNAMAARIGLPSMRALVTTLVQSQQYGTPITQSLRMLS 214
Query: 277 SETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSII 323
R+ +++ E+KAA L PK+T+PM++F +P + L+ GPA++ +I
Sbjct: 215 RTERAMQMIALEEKAAKLAPKMTLPMMLFVMPTVALIAAGPAVIRLI 261
>gi|148655425|ref|YP_001275630.1| type II secretion system protein [Roseiflexus sp. RS-1]
gi|148567535|gb|ABQ89680.1| type II secretion system protein [Roseiflexus sp. RS-1]
Length = 311
Score = 113 bits (282), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 59/168 (35%), Positives = 99/168 (58%), Gaps = 3/168 (1%)
Query: 159 VGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPL 218
+G+ P +W+ ++KR+ +I +A PDALDLL ICVE+G+S DQA++R+ E PL
Sbjct: 142 MGYLLPGIWLGQQIKKRKKAIVKALPDALDLLCICVEAGLSFDQAMQRLTEK---WDDPL 198
Query: 219 SEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSE 278
S+E +++ R+ A ++ +R +D V+ A+IQ+++ G SIG LR+ +
Sbjct: 199 SKEFKRVLSDTRLGRPRRDAMKDMIDRCGVDDVQTFIGAVIQAEQLGVSIGRILRIQSDQ 258
Query: 279 TRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
R R AE++A K+ PM+ P L +VI+GPA+ I+ ++
Sbjct: 259 MRIRRRQRAEEEAHKAPIKMLFPMVFLIFPALFIVILGPAVPRIMKSL 306
>gi|27365656|ref|NP_761184.1| type II/IV secretion system protein TadC [Vibrio vulnificus CMCP6]
gi|27361804|gb|AAO10711.1| Type II/IV secretion system protein TadC, associated with Flp pilus
assembly [Vibrio vulnificus CMCP6]
Length = 293
Score = 113 bits (282), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 57/164 (34%), Positives = 100/164 (60%), Gaps = 2/164 (1%)
Query: 153 VILIGYV-GFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDI 211
++L+GYV G P W++ + + +K++ PDA+DLL++CVESG+S+++A RVA +
Sbjct: 118 LVLVGYVLGANGPEWWLNLNADRYRKKLKQSAPDAIDLLVLCVESGLSLNRAFERVARYL 177
Query: 212 GGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDS 271
Q P++E+ +T AEL L +R A N RT + + L +D+YG+ + D+
Sbjct: 178 QEQHAPMAEQFRVTSAELDLLNDRTQALNNLSWRTGIPELHTLATTLTMADKYGSPLADT 237
Query: 272 LRVLVSETRSERLMEAEKKAASLGPKLT-VPMIIFFLPVLILVI 314
LR + + R +R ++ E++A L K+T + M + LP+L++VI
Sbjct: 238 LRQISEDARRQRALDIEERAGKLPGKITLIQMTMIMLPMLVMVI 281
>gi|37680188|ref|NP_934797.1| Flp pilus assembly protein TadC [Vibrio vulnificus YJ016]
gi|37198935|dbj|BAC94768.1| Flp pilus assembly protein TadC [Vibrio vulnificus YJ016]
Length = 293
Score = 113 bits (282), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 57/164 (34%), Positives = 100/164 (60%), Gaps = 2/164 (1%)
Query: 153 VILIGYV-GFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDI 211
++L+GYV G P W++ + + +K++ PDA+DLL++CVESG+S+++A RVA +
Sbjct: 118 LVLVGYVLGANGPEWWLNLNADRYRKKLKQSAPDAIDLLVLCVESGLSLNRAFERVARYL 177
Query: 212 GGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDS 271
Q P++E+ +T AEL L +R A N RT + + L +D+YG+ + D+
Sbjct: 178 QEQHAPMAEQFRVTSAELDLLNDRTQALNNLSWRTGIPELHTLATTLTMADKYGSPLADT 237
Query: 272 LRVLVSETRSERLMEAEKKAASLGPKLT-VPMIIFFLPVLILVI 314
LR + + R +R ++ E++A L K+T + M + LP+L++VI
Sbjct: 238 LRQISEDARRQRALDIEERAGKLPGKITLIQMTMIMLPMLVMVI 281
>gi|320156058|ref|YP_004188437.1| flp pilus assembly protein TadC [Vibrio vulnificus MO6-24/O]
gi|319931370|gb|ADV86234.1| flp pilus assembly protein TadC [Vibrio vulnificus MO6-24/O]
Length = 293
Score = 113 bits (282), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 57/164 (34%), Positives = 100/164 (60%), Gaps = 2/164 (1%)
Query: 153 VILIGYV-GFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDI 211
++L+GYV G P W++ + + +K++ PDA+DLL++CVESG+S+++A RVA +
Sbjct: 118 LVLVGYVLGANGPEWWLNLNADRYRKKLKQSAPDAIDLLVLCVESGLSLNRAFERVARYL 177
Query: 212 GGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDS 271
Q P++E+ +T AEL L +R A N RT + + L +D+YG+ + D+
Sbjct: 178 QEQHAPMAEQFRVTSAELDLLNDRTQALNNLSWRTGIPELHTLATTLTMADKYGSPLADT 237
Query: 272 LRVLVSETRSERLMEAEKKAASLGPKLT-VPMIIFFLPVLILVI 314
LR + + R +R ++ E++A L K+T + M + LP+L++VI
Sbjct: 238 LRQISEDARRQRALDIEERAGKLPGKITLIQMTMIMLPMLVMVI 281
>gi|320101695|ref|YP_004177286.1| type II secretion system F domain-containing protein [Isosphaera
pallida ATCC 43644]
gi|319748977|gb|ADV60737.1| Type II secretion system F domain protein [Isosphaera pallida ATCC
43644]
Length = 318
Score = 113 bits (282), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 74/232 (31%), Positives = 120/232 (51%), Gaps = 32/232 (13%)
Query: 105 AGFRSEYSLNILLVVRL---------VVPII-----FLILGIIWIFGYDKLLEYPFQLRV 150
AGFRS +++I + V+L VVP++ F GI++ + +
Sbjct: 98 AGFRSPNAVSIFMGVKLIFFLTSVAVVVPLVYTNYGFTTTGILY-------------MAI 144
Query: 151 GAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAED 210
GA I G APS ++ L +RQ I PDALDL+++CVE+G+ +D A R+A +
Sbjct: 145 GAAI-----GMIAPSFFLGYLKSRRQEQIFLTLPDALDLMVVCVEAGLGLDAAFNRIASE 199
Query: 211 IGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGD 270
+ + L EE + ++ R+ + RT + +R LIQ++R+G+SI
Sbjct: 200 LQTAAPVLCEEFAIANFQIRMGRPRREVLRDLGVRTGVADLRALAAVLIQAERFGSSIAS 259
Query: 271 SLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
+LRV R +R AE+KAA KL P+++F P + +V++GPA +SI
Sbjct: 260 ALRVQSDSMRIKRRQIAEEKAAKTAVKLLFPLVLFIFPGIFVVLVGPAAISI 311
>gi|227114881|ref|ZP_03828537.1| putative type IV pilus protein [Pectobacterium carotovorum subsp.
brasiliensis PBR1692]
Length = 319
Score = 112 bits (280), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 57/173 (32%), Positives = 103/173 (59%), Gaps = 1/173 (0%)
Query: 152 AVILIGY-VGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAED 210
A LIG+ VG P W+ R + A PDALDL+++C E+G+ I + L+ V+++
Sbjct: 142 AAGLIGFFVGSMVPEWWLKWRAASRGEKLACAVPDALDLMVVCAEAGLPIGRVLQVVSKE 201
Query: 211 IGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGD 270
+G S +++E+ T AEL L +R +A ++ RT++ + + LIQ++RYGT +
Sbjct: 202 LGLSSPEMADELHYTAAELQILSDRTLAMKHLAERTRVSEIESMVATLIQAERYGTPLSQ 261
Query: 271 SLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSII 323
+LR + E+R ++ E+KA L +L+VP++ LP +I ++ PA++ ++
Sbjct: 262 ALRTIADESRKTLILSLEEKAGKLPAQLSVPLMALILPPIIAIMASPALVRVV 314
>gi|261252092|ref|ZP_05944665.1| flp pilus assembly protein TadC [Vibrio orientalis CIP 102891]
gi|260935483|gb|EEX91472.1| flp pilus assembly protein TadC [Vibrio orientalis CIP 102891]
Length = 314
Score = 112 bits (279), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 77/258 (29%), Positives = 127/258 (49%), Gaps = 11/258 (4%)
Query: 74 TRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPII-FLILGI 132
+R KSL + + E+I KL AG+ +L ++ V ++ FL+
Sbjct: 65 SRLEKSLESLAPAMKSSNSKESESIRVKLMHAGYHDASALTFFYAMKGVSMVVGFLMAAG 124
Query: 133 IWIFGYDKLLEYPFQLRVGAVILIGYVGFC--APSVWISNLVQKRQSSIKRAWPDALDLL 190
I+ F P ++ + + +IG V F P+V +S +V KRQS I+ PDALDLL
Sbjct: 125 IYFFA-------P-EMSMRNIAMIGSVAFGLYCPNVVLSMMVDKRQSRIRSGIPDALDLL 176
Query: 191 LICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDC 250
++C ESG+ + ALRRVA+++ ++E+ ++S AF + RT +
Sbjct: 177 VVCTESGLGFNAALRRVADELTISHPDFADELDTVCVKISAGVEMSDAFNDLIKRTGLSE 236
Query: 251 VRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVL 310
+ L + R G S+ +LR + R +R E E+ AA + K+ P++IF P
Sbjct: 237 IAGLVTMLAHASRIGGSLSQTLREYTEDYRDKRNQEIEEIAAKIPTKMIFPLLIFIWPCF 296
Query: 311 ILVIIGPAILSIIDTMKD 328
+V IGP++L TM +
Sbjct: 297 FIVAIGPSMLLFTSTMGN 314
>gi|187927682|ref|YP_001898169.1| type II secretion system protein [Ralstonia pickettii 12J]
gi|187724572|gb|ACD25737.1| type II secretion system protein [Ralstonia pickettii 12J]
Length = 320
Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 66/168 (39%), Positives = 105/168 (62%)
Query: 155 LIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQ 214
L+ +G+ P+ ++ V+ RQ + +PD LDLL +CVE+G+ +D A+ RV++++ +
Sbjct: 140 LLSAIGYYLPNAALARKVEHRQRDVFEEFPDMLDLLTVCVEAGLGLDAAMMRVSDELALR 199
Query: 215 SVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRV 274
++EEM LT+ EL ++ A N RT ++ V LIQ+DR+GTS+ DSLRV
Sbjct: 200 CPVMAEEMELTLLELRSGFPKEKALTNLALRTGVEDVDRFASMLIQADRFGTSLADSLRV 259
Query: 275 LVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
L R++R M AE++AA + KL P+I F P L+LV++GPA + I
Sbjct: 260 LSDMLRTKRRMRAEEQAAKIALKLLFPLIFFIFPTLLLVLLGPAFIQI 307
>gi|27365114|ref|NP_760642.1| Flp pilus assembly protein TadC [Vibrio vulnificus CMCP6]
gi|320155497|ref|YP_004187876.1| type II/IV secretion system protein TadC, associated with Flp pilus
assembly [Vibrio vulnificus MO6-24/O]
gi|27361260|gb|AAO10169.1| Flp pilus assembly protein TadC [Vibrio vulnificus CMCP6]
gi|319930809|gb|ADV85673.1| type II/IV secretion system protein TadC, associated with Flp pilus
assembly [Vibrio vulnificus MO6-24/O]
Length = 314
Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 74/277 (26%), Positives = 140/277 (50%), Gaps = 16/277 (5%)
Query: 57 KQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVD----ENIVNKLRAAGFRSEYS 112
K+++ + K+ + L+ + S+ + N ++ L + D E+I ++L AGF + +
Sbjct: 46 KKKLEQIHKEVSGKALKKK-SRKVENTLESLAPIVVGKDSKEKESIRSQLMHAGFHNRDA 104
Query: 113 LNILLVVRLVVPIIFLILGIIWIFGYDKLLEY--PFQLRVGAVILIGYVG-FCAPSVWIS 169
L + ++ I F +LG FG + + P V+++ G P++ ++
Sbjct: 105 LTVFYAIK----IFFAVLG----FGGAAAVFFLLPDMDNSTLVMVVAVAGGLYIPNIGLN 156
Query: 170 NLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAEL 229
+ V+KRQ I+ PDALDLL++C ESG+ + ALR+VA+++ ++E+ A++
Sbjct: 157 HFVKKRQRMIRAGVPDALDLLVVCTESGLGFNAALRKVADELAISHPEFADELDTVCAKI 216
Query: 230 SFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEK 289
AFE RT + + L + + G S+ +LR + R +R E E+
Sbjct: 217 KAGVEMSTAFEELVTRTGLSEINGLVNMLSHASKIGGSLSQTLRDYTEDFRDKRNQEVEE 276
Query: 290 KAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
AA + K+ P+++F P +V +GPA+LS+ D +
Sbjct: 277 IAAKIPTKMIFPLLLFIWPCFFIVAVGPALLSLSDAL 313
>gi|197117442|ref|YP_002137869.1| Flp pilus assembly protein [Geobacter bemidjiensis Bem]
gi|197086802|gb|ACH38073.1| Flp pilus assembly protein, putative [Geobacter bemidjiensis Bem]
Length = 302
Score = 111 bits (277), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 75/234 (32%), Positives = 120/234 (51%), Gaps = 15/234 (6%)
Query: 95 DENIVNKLRAAGFRSEYSLNIL---LVVRLVVPIIFLILGIIW---IFGYDKLLEYPFQL 148
+ V L AAGFR + L L++ V+P+I L+ F LL
Sbjct: 73 ESKYVKALVAAGFRKDAVYRFLGAKLLLAGVLPLICLLAVATTSRTFFTTQTLL------ 126
Query: 149 RVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVA 208
A +G+ AP+ W+ V+ RQ I PD LDL+ +CVE+G+SID AL R
Sbjct: 127 ---ATAFFSIIGYLAPTYWLHLKVKARQLEIFHPLPDILDLVTLCVEAGLSIDAALIRTT 183
Query: 209 EDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSI 268
E + PL+ E+ E+ R + ++ RT+++ + + T + Q++R+GTS+
Sbjct: 184 ETPQFRDNPLAIEIRQVTMEVRAGKPRVESLKDMAVRTRVEDIGSFTTMVAQAERFGTSL 243
Query: 269 GDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
+LR E R++R AE+ AA KL P+I+F P L++VI+GPA++ +
Sbjct: 244 SHALRTFSDELRTKRRQMAEEAAAKTTIKLIFPLIMFIFPALLVVILGPAVVKL 297
>gi|323700365|ref|ZP_08112277.1| Type II secretion system F domain [Desulfovibrio sp. ND132]
gi|323460297|gb|EGB16162.1| Type II secretion system F domain [Desulfovibrio desulfuricans
ND132]
Length = 318
Score = 111 bits (277), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 80/262 (30%), Positives = 129/262 (49%), Gaps = 15/262 (5%)
Query: 78 KSLRNFVKKLNLKAILVDENIVNKLR----AAGFRSEYSLNILLVVRLVVPIIFLILGII 133
KS+ +F +L K + ++K R AG R S I ++ FL +G+
Sbjct: 62 KSVVDFFGRLGTKIGPTETEEIDKGRLRLIQAGMRKPDSYKIFQGLK-----GFLAVGLA 116
Query: 134 WIFGYDKLL---EYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLL 190
F + L + + + + VG P W+S + +R+ ++ PDALDLL
Sbjct: 117 GGFLLVRFLFIEDMSIAMTAFGTVTLAAVGVYGPEYWLSKKINRRKLAVGDELPDALDLL 176
Query: 191 LICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDC 250
++CVESG+ +DQA+ RV +++ +S E L EL R A + R +D
Sbjct: 177 VVCVESGMGLDQAVDRVCQEMKNSGPIISSEFKLLTLELRAGKARIDALRSLAERVGLDD 236
Query: 251 VRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVL 310
+ + T LIQ+D +G S+G +LRV R +R AE+KAA + L +P++ F LP L
Sbjct: 237 LNSLTSLLIQADAFGISVGRTLRVYSDAMRVKRSQRAEEKAAKMPVLLLLPLVAFILPTL 296
Query: 311 ILVIIGPAILSIID---TMKDH 329
+ I+GPA++ +D M H
Sbjct: 297 FVAILGPAVIMSMDMFLKMNSH 318
>gi|37680835|ref|NP_935444.1| Flp pilus assembly protein TadC [Vibrio vulnificus YJ016]
gi|37199584|dbj|BAC95415.1| Flp pilus assembly protein TadC [Vibrio vulnificus YJ016]
Length = 329
Score = 111 bits (277), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 74/277 (26%), Positives = 140/277 (50%), Gaps = 16/277 (5%)
Query: 57 KQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVD----ENIVNKLRAAGFRSEYS 112
K+++ + K+ + L+ + S+ + N ++ L + D E+I ++L AGF + +
Sbjct: 61 KKKLEQIHKEVSGKALKKK-SRKVENTLESLAPIVVGKDSKEKESIRSQLMHAGFHNRDA 119
Query: 113 LNILLVVRLVVPIIFLILGIIWIFGYDKLLEY--PFQLRVGAVILIGYVG-FCAPSVWIS 169
L + ++ I F +LG FG + + P V+++ G P++ ++
Sbjct: 120 LTVFYAIK----IFFAVLG----FGGAAAVFFLLPDMDNSTLVMVVAVAGGLYIPNIGLN 171
Query: 170 NLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAEL 229
+ V+KRQ I+ PDALDLL++C ESG+ + ALR+VA+++ ++E+ A++
Sbjct: 172 HFVKKRQRMIRAGVPDALDLLVVCTESGLGFNAALRKVADELAISHPEFADELDTVCAKI 231
Query: 230 SFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEK 289
AFE RT + + L + + G S+ +LR + R +R E E+
Sbjct: 232 KAGVEMSTAFEELVTRTGLSEINGLVNMLSHASKIGGSLSQTLRDYTEDFRDKRNQEVEE 291
Query: 290 KAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
AA + K+ P+++F P +V +GPA+LS+ D +
Sbjct: 292 IAAKIPTKMIFPLLLFIWPCFFIVAVGPALLSLSDAL 328
>gi|193213109|ref|YP_001999062.1| type II secretion system protein [Chlorobaculum parvum NCIB 8327]
gi|193086586|gb|ACF11862.1| type II secretion system protein [Chlorobaculum parvum NCIB 8327]
Length = 313
Score = 111 bits (277), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 74/274 (27%), Positives = 146/274 (53%), Gaps = 20/274 (7%)
Query: 66 DSASSR-LRTRDSKSLRNFVKKLNLKAILVDEN-----IVNKLRAAGFRSEYSLNILLVV 119
D SS+ ++++ ++ N + KL+L DE + K AG R++ + +
Sbjct: 50 DKPSSKPVKSQRVATVVNILSKLSLP----DEGWQSSAVRVKFLQAGIRNQNAPQYYFAI 105
Query: 120 RLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYV----GFCAPSVWISNLVQKR 175
+ ++ ++F +L +++ +L P +L++ +IL + G+ P + + + Q+R
Sbjct: 106 KTLLTLVFPVLLALFL-----VLNQP-KLQLIHIILFALLTAAAGYYLPELLLRFITQRR 159
Query: 176 QSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNR 235
++ PD ++L++IC E+G+SID A R++ ++ LS+E L+ E+ R
Sbjct: 160 IERMRNGLPDMIELMVICTEAGMSIDAASTRISREMARSYPDLSQEFYLSSLEMRAGATR 219
Query: 236 QVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLG 295
A N R ++ + + LIQ+D++GTS+ DSLRV R+ R AE+ A +
Sbjct: 220 LDALRNMALRVGLEELEDLVSVLIQADKFGTSLADSLRVHSDVMRTRRSQRAEELANKVP 279
Query: 296 PKLTVPMIIFFLPVLILVIIGPAILSIIDTMKDH 329
K+ +P+I+F P L++V++GPAI+ ++D +
Sbjct: 280 VKMLLPLILFIFPTLLMVLLGPAIIQLLDVLSKQ 313
>gi|162147495|ref|YP_001601956.1| type II secretion system protein [Gluconacetobacter diazotrophicus
PAl 5]
gi|161786072|emb|CAP55654.1| putative type II secretion system protein [Gluconacetobacter
diazotrophicus PAl 5]
Length = 313
Score = 111 bits (277), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 81/286 (28%), Positives = 148/286 (51%), Gaps = 20/286 (6%)
Query: 52 REILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNL---KAILVDENIVNKLR----A 104
R LR +Q+ L A++ +RT D + F++++ + ++ L+ + +L+ +
Sbjct: 35 RRTLRLRQLHELSVGEANA-VRTIDGRIWFRFLERIGVFFARSGLLSAKTLGELQQTLSS 93
Query: 105 AGFRSEYSLNILLVVRLVVPIIFLILGIIWIFG----YDKLLEYPFQLRVGAVILIGYVG 160
F L + + + V ++ +++G W+ D +L L GA + VG
Sbjct: 94 VSFLGTRFLPVFIGAKAVTLVVGIVVG--WLIHEETRSDGMLYLVLSL--GAPV----VG 145
Query: 161 FCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSE 220
AP + + ++ + PDALD+L+IC E+G+ I+ A+ RV ++ + ++
Sbjct: 146 LLAPDFVVKRMQAHYLRNVDQGIPDALDMLVICAEAGLPIEAAIGRVGREMTAVNRSVAN 205
Query: 221 EMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETR 280
E LT E+ +R+ F +F RT + +R AL Q+ + G+S+ +LRVL E R
Sbjct: 206 EFRLTAQEMGVASDRRDVFLHFGERTNLSSMRRIGSALNQTLQAGSSVTQALRVLSVEMR 265
Query: 281 SERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
+ L E E +AA L LT+PMI+F LPV+ LV+ GPA ++++ +
Sbjct: 266 KDALTEYEARAARLPVLLTLPMILFILPVVFLVVGGPAAVTVMHAL 311
>gi|300704935|ref|YP_003746538.1| tad secretion system, secretion accessory protein [Ralstonia
solanacearum CFBP2957]
gi|299072599|emb|CBJ43949.1| Tad secretion system, secretion accessory protein [Ralstonia
solanacearum CFBP2957]
Length = 314
Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 64/176 (36%), Positives = 107/176 (60%), Gaps = 2/176 (1%)
Query: 154 ILIG--YVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDI 211
+L+G +GF P+V + +++RQ I A+PD+LDL+++CVE+G+ +D A+ RV E++
Sbjct: 133 VLLGAALIGFYLPNVLLRLKIRRRQRDIFEAFPDSLDLIMVCVEAGLGLDAAVLRVVEEM 192
Query: 212 GGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDS 271
++EE L EL R+ A N RT ++ V LIQ+DR+GTS+ +S
Sbjct: 193 RTARPAMAEEYELLTLELRAGLAREKALRNLAARTGVEDVSMLVAMLIQADRFGTSVAES 252
Query: 272 LRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
LRV R++R M AE++AA +G K+ P+I P L +V++GPA + ++ ++
Sbjct: 253 LRVHSDMLRTKRHMLAEERAAKIGTKILFPLIFCIFPSLFVVLLGPAAIQVVGALR 308
>gi|209545602|ref|YP_002277831.1| type II secretion system protein [Gluconacetobacter diazotrophicus
PAl 5]
gi|209533279|gb|ACI53216.1| type II secretion system protein [Gluconacetobacter diazotrophicus
PAl 5]
Length = 313
Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 79/284 (27%), Positives = 148/284 (52%), Gaps = 16/284 (5%)
Query: 52 REILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNL---KAILVDENIVNKLR----A 104
R LR +Q+ L A++ +RT D + F++++ + ++ L+ + +L+ +
Sbjct: 35 RRTLRLRQLHELSVGEANA-VRTIDGRIWFRFLERIGVFFARSGLLSAKTLGELQQTLSS 93
Query: 105 AGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIG--YVGFC 162
F L + + + V ++ +++G W+ + + L V+ +G VG
Sbjct: 94 VSFLGTRFLPVFIGAKAVTLVVGIVVG--WLIHEETRSDGMLYL----VLSLGAPMVGLL 147
Query: 163 APSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEM 222
AP + + ++ + PDALD+L+IC E+G+ I+ A+ RV ++ + ++ E
Sbjct: 148 APDFIVKRMQAHYLRNVDQGIPDALDMLVICAEAGLPIEAAIGRVGREMTAVNRSVANEF 207
Query: 223 LLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSE 282
LT E+ +R+ F +F RT + +R AL Q+ + G+S+ +LRVL E R +
Sbjct: 208 RLTAQEMGVASDRRDVFLHFGERTNLSSMRRIGSALNQTLQAGSSVTQALRVLSVEMRKD 267
Query: 283 RLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
L E E +AA L LT+PMI+F LPV+ LV+ GPA ++++ +
Sbjct: 268 ALTEYEARAARLPVLLTLPMILFILPVVFLVVGGPAAVTVMHAL 311
>gi|218710398|ref|YP_002418019.1| Flp pilus assembly protein TadC [Vibrio splendidus LGP32]
gi|218323417|emb|CAV19594.1| Flp pilus assembly protein TadC [Vibrio splendidus LGP32]
Length = 323
Score = 110 bits (275), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 74/254 (29%), Positives = 130/254 (51%), Gaps = 18/254 (7%)
Query: 78 KSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILG--IIWI 135
+SL F+ K N K +E KL AGF + +L++ ++++ ++ +I G + +I
Sbjct: 76 ESLSPFISKGNKKD---NETYSQKLMHAGFHEKNALSVFYALKVLSSLVGIIAGFMVYYI 132
Query: 136 -FG--YDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLI 192
FG Y+ LL ++ ++G P++ +S L ++RQ I+ PDALDLL++
Sbjct: 133 SFGGSYNNLL----------IMTCVFLGTFTPNIILSKLQKERQKKIRNGVPDALDLLVV 182
Query: 193 CVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVR 252
C ESG+ + AL RVA ++ L++E+ A++ A F +RT + +
Sbjct: 183 CTESGLGFNAALGRVASELYVSQPELADELETVFAKIQAGVTMPDALRQFIDRTGLVELE 242
Query: 253 NATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLIL 312
L + R G S+ +LR + R +R AE+ AA + K+ PM++F P +
Sbjct: 243 GLVSLLSHASRMGGSLAQTLRDYTVDFRDKRQQAAEEIAAKIPTKMLFPMLLFIWPCFFI 302
Query: 313 VIIGPAILSIIDTM 326
V +GP I+ +ID +
Sbjct: 303 VALGPGIIIVIDAL 316
>gi|115376389|ref|ZP_01463626.1| Flp pilus assembly protein TadC [Stigmatella aurantiaca DW4/3-1]
gi|115366596|gb|EAU65594.1| Flp pilus assembly protein TadC [Stigmatella aurantiaca DW4/3-1]
Length = 238
Score = 110 bits (274), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 69/229 (30%), Positives = 116/229 (50%), Gaps = 10/229 (4%)
Query: 95 DENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVI 154
+ + KL AG S Y ++ ++ + +I LI+G+I G + L + +
Sbjct: 14 ESKMRRKLIKAGDPSGYKPEDIMALQEIGLVIGLIMGLILANGLSQHLAWS--------L 65
Query: 155 LIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQ 214
L G P++W+++ V++R +I RA P LDLL + VE+G+ AL +V E G+
Sbjct: 66 LAALFGLYYPAIWVNDQVKRRHLAISRALPYNLDLLTLSVEAGLDFTAALSKVVEK--GK 123
Query: 215 SVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRV 274
S PL EEM + + +L R+ A + R + + ALIQ+D+ GTS+G LR+
Sbjct: 124 SGPLKEEMSIVLKQLKMGKTREEALKAMILRVDLPSLTTFVTALIQADKMGTSLGKVLRI 183
Query: 275 LVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSII 323
++ R +R AEK A K+ P+I P + +V+ GP + +
Sbjct: 184 QSTQMRIDRTQRAEKLAGEAPVKMLFPLIACIFPTVFMVLFGPIVFQFM 232
>gi|310822671|ref|YP_003955029.1| type II secretion system protein f domain-containing protein
[Stigmatella aurantiaca DW4/3-1]
gi|309395743|gb|ADO73202.1| Type II secretion system protein F domain protein [Stigmatella
aurantiaca DW4/3-1]
Length = 296
Score = 110 bits (274), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 69/223 (30%), Positives = 114/223 (51%), Gaps = 10/223 (4%)
Query: 101 KLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVG 160
KL AG S Y ++ ++ + +I LI+G+I G + L + +L G
Sbjct: 78 KLIKAGDPSGYKPEDIMALQEIGLVIGLIMGLILANGLSQHLAWS--------LLAALFG 129
Query: 161 FCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSE 220
P++W+++ V++R +I RA P LDLL + VE+G+ AL +V E G+S PL E
Sbjct: 130 LYYPAIWVNDQVKRRHLAISRALPYNLDLLTLSVEAGLDFTAALSKVVEK--GKSGPLKE 187
Query: 221 EMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETR 280
EM + + +L R+ A + R + + ALIQ+D+ GTS+G LR+ ++ R
Sbjct: 188 EMSIVLKQLKMGKTREEALKAMILRVDLPSLTTFVTALIQADKMGTSLGKVLRIQSTQMR 247
Query: 281 SERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSII 323
+R AEK A K+ P+I P + +V+ GP + +
Sbjct: 248 IDRTQRAEKLAGEAPVKMLFPLIACIFPTVFMVLFGPIVFQFM 290
>gi|220913386|ref|YP_002488695.1| type II secretion system protein [Arthrobacter chlorophenolicus A6]
gi|219860264|gb|ACL40606.1| type II secretion system protein [Arthrobacter chlorophenolicus A6]
Length = 291
Score = 109 bits (273), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 72/249 (28%), Positives = 132/249 (53%), Gaps = 13/249 (5%)
Query: 77 SKSLRNFVKKLNLKAILVDENIVNK-LRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWI 135
S+ L F +++ K E ++K L AG ++ L +L+V+ ++ ++G +
Sbjct: 52 SQHLVEFSQRITPKGY---EGWLDKQLSGAGRPKQWPLARILMVKPMLAFGGALIGFMLF 108
Query: 136 FGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVE 195
G P R +LI +G+ P + + N QKR+ +I+ P+ALD +LI V+
Sbjct: 109 LGA------PSAGRFVMAVLIVALGYFVPDLLLRNRAQKRREAIRLELPNALDQMLISVQ 162
Query: 196 SGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNAT 255
+G+ + A+ R E+ G PL+EE++ T+ ++ +R+ A+ R + VR
Sbjct: 163 AGLGFETAMGRAGENGRG---PLAEELIRTLQDIQVGRSRKEAYLALSERVDVPSVRTFV 219
Query: 256 QALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVII 315
+A++Q+D YG +I + L+ + R +R AE+ A + K+ P+I F LP L +V++
Sbjct: 220 RAVVQADAYGIAIANVLKTQAKDMRIKRRQLAEEHAMKMPVKMLFPLIFFILPTLFIVLL 279
Query: 316 GPAILSIID 324
GPA+L I+
Sbjct: 280 GPAVLQIMS 288
>gi|323491540|ref|ZP_08096719.1| Flp pilus assembly protein TadC [Vibrio brasiliensis LMG 20546]
gi|323314116|gb|EGA67201.1| Flp pilus assembly protein TadC [Vibrio brasiliensis LMG 20546]
Length = 313
Score = 109 bits (273), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 72/271 (26%), Positives = 132/271 (48%), Gaps = 6/271 (2%)
Query: 57 KQQITSLQKDSASSRLRT-RDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNI 115
K +++ L+ + + + +T R +L + + E+I KL AG+ +L +
Sbjct: 46 KAKLSQLKSANGTEKHKTKRLENTLESLAPAMQPSNSKESESIREKLMHAGYLDANALTV 105
Query: 116 LLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKR 175
++ + +I L++ + F +R A+++ VG P+V + +V KR
Sbjct: 106 FYALKGMSTVIGLLMAAGFFF-----FAPDMSMRNLAMVVSVAVGLYGPNVVLGFMVDKR 160
Query: 176 QSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNR 235
QS I+ PDALDLL++C ESG+ + ALRRVA+++ ++E+ +++
Sbjct: 161 QSKIRGGIPDALDLLVVCTESGLGFNAALRRVADELTISHPEFADELDTVCVKVNAGVEM 220
Query: 236 QVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLG 295
AF + RT + + L + + G S+ +LR + R +R E E+ AA +
Sbjct: 221 SDAFNDLIQRTGLKEIAGLVTMLAHASKIGGSLSQTLREYTEDYRDKRNQEIEEVAAKIP 280
Query: 296 PKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
K+ P++IF P +V IGP++L TM
Sbjct: 281 TKMIFPLLIFIWPCFFIVAIGPSMLLFTATM 311
>gi|149909167|ref|ZP_01897824.1| putative type IV pilus protein [Moritella sp. PE36]
gi|149807691|gb|EDM67637.1| putative type IV pilus protein [Moritella sp. PE36]
Length = 294
Score = 109 bits (273), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 79/305 (25%), Positives = 156/305 (51%), Gaps = 20/305 (6%)
Query: 22 VSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLR 81
+++ LI VI + +G+ ++R +L++ + S+++ + L +S S
Sbjct: 7 IAVALLITGAVIALMFNGQAQRR-------ELLLQRLTLVSVEQSRRFTHLPQAESTS-- 57
Query: 82 NFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKL 141
+ +LN V +I L AGF + L+ ++ V LI G+ W + D
Sbjct: 58 SLWPRLN-----VAPDISMLLVKAGFHGPRAGAYFLLSKISV---MLISGLAWQWYVDFD 109
Query: 142 LEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISID 201
L+ + + ++ G W+ + I A PDALDL++ICVESG++++
Sbjct: 110 LD---KFVLAKTLVFAISGGLLAEHWLKWRARTVNYRIALALPDALDLMVICVESGLTLE 166
Query: 202 QALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQS 261
+RV ++ S LS E L+T AEL L +R A N RT + V N AL Q+
Sbjct: 167 AVFQRVGHEMTAVSPELSREWLITEAELRLLDSRLTALNNLAKRTDLVEVENMVIALSQA 226
Query: 262 DRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILS 321
++YG+ I ++R++ S++R + + E+K + K+++P+++ + ++++I+ P I++
Sbjct: 227 EKYGSKIAPTMRLIASDSRQYQYLRLEEKVGKIPAKMSLPVVVLIMLPVVVLIVAPTIIA 286
Query: 322 IIDTM 326
++D++
Sbjct: 287 LLDSI 291
>gi|87199542|ref|YP_496799.1| type II secretion system protein [Novosphingobium aromaticivorans
DSM 12444]
gi|87135223|gb|ABD25965.1| type II secretion system protein [Novosphingobium aromaticivorans
DSM 12444]
Length = 322
Score = 109 bits (273), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 81/278 (29%), Positives = 138/278 (49%), Gaps = 10/278 (3%)
Query: 52 REILRKQQITSLQKDSASSRLRTRDSK---SLRNFVKKLNLKAILVDEN---IVNKLRAA 105
R LR + S + A + L S S+ N +++ L L D N + KL AA
Sbjct: 40 RAHLRTVSVDSGASNGAETSLAQSRSGPFWSIVNVIERTGLS--LADSNPDALRTKLIAA 97
Query: 106 GFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPS 165
GF + + I + RL++ + I ++ L VG+V G +G AP+
Sbjct: 98 GFEATEAPTIYTLSRLILVFLLPACAISYLMLTGSELTIFKLYMVGSVS--GLLGLIAPA 155
Query: 166 VWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLT 225
++ +R +I +P+ LDL+L+CVE+G+ ++ A RV+ +I ++ ++ T
Sbjct: 156 WFVRIKADRRMEAITNGFPNCLDLILVCVEAGLGMEAAFDRVSREIARAEPQVAHLLVRT 215
Query: 226 IAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLM 285
L R+ A +D +R+ LIQS++ GTSIG +LRV SE R +R M
Sbjct: 216 NLHLRAGATREEALHRMATLAGVDEIRSFATLLIQSEKLGTSIGTTLRVFASEMREKRRM 275
Query: 286 EAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSII 323
AE+KA L +++P++ LP +I V++ PA + ++
Sbjct: 276 RAEEKAHRLPVLISLPLVTCMLPTMIGVLMIPAAIRVV 313
>gi|27378607|ref|NP_770136.1| hypothetical protein blr3496 [Bradyrhizobium japonicum USDA 110]
gi|27351755|dbj|BAC48761.1| blr3496 [Bradyrhizobium japonicum USDA 110]
Length = 302
Score = 109 bits (272), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 55/165 (33%), Positives = 99/165 (60%), Gaps = 2/165 (1%)
Query: 159 VGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPL 218
VG P + ++ L ++ ++I+ PD +DLL++C E+G+ ++ L RVA+++ + P+
Sbjct: 132 VGILGPRLILAVLKRRFDAAIRVGTPDMIDLLVVCSEAGMGLESGLARVAQEMSETNPPM 191
Query: 219 SEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSE 278
+ + + +L LPNR AF+ T D +R + QS +YGT +G +LR + +
Sbjct: 192 ARVLHCLLDDLRILPNRSDAFDKLG--TTSDGLRRFGTMVAQSLQYGTPVGQALRNIAVD 249
Query: 279 TRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSII 323
R ER+ + E++A LG KLT+PM++F LP + +V+ G IL ++
Sbjct: 250 LRRERITKLEERAHKLGAKLTIPMVLFLLPAMFVVLGGSPILHLV 294
>gi|317123667|ref|YP_004097779.1| type II secretion system F domain [Intrasporangium calvum DSM
43043]
gi|315587755|gb|ADU47052.1| Type II secretion system F domain [Intrasporangium calvum DSM
43043]
Length = 306
Score = 109 bits (272), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 86/312 (27%), Positives = 148/312 (47%), Gaps = 29/312 (9%)
Query: 21 AVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSL 80
AV++F L+ A+ S GSG KS+A+ ++ Q+ + + L +D
Sbjct: 12 AVAVFGLVLAL---SFGSGGPTGVAKSLAMIEGVVT-------QRSAVKTELDAKDRLVE 61
Query: 81 RNFVKKLNLKAIL----VDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIF 136
F + + +L + + L AG S ++ ++ + V +I L+LG+ +
Sbjct: 62 PIFNRAQRIATVLSPQGTSDRLARGLERAGNPSPWTAERVMGAKGVALLIGLLLGVAY-- 119
Query: 137 GYDKLLEYPFQLRVGAVILIGYVG--FCAPSVWISNLVQKRQSSIKRAWPDALDLLLICV 194
F LR G V +G+ G F P++ + N +RQ + +ALD+L +CV
Sbjct: 120 -------GGFSLR-GFVFALGFGGAAFWLPNLLVYNAALRRQEQVATGLAEALDMLTVCV 171
Query: 195 ESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNA 254
E+G D AL +VA G P+S E ++E+ +R AF +R + V+N
Sbjct: 172 EAGQGFDAALVQVARSTDG---PISGEFARVLSEVQIGKSRSEAFAGLGDRVSLSDVKNF 228
Query: 255 TQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVI 314
A+IQ+D+ G I LR + R R AE+KA + K+ P+++ P + +VI
Sbjct: 229 VSAIIQADKLGIPIASVLREQTAAMRLSRRQRAEEKAQKVTVKILFPLLLCIFPAMFVVI 288
Query: 315 IGPAILSIIDTM 326
+GP I+ +I T+
Sbjct: 289 LGPGIIRMITTL 300
>gi|319940445|ref|ZP_08014790.1| hypothetical protein HMPREF9464_00009 [Sutterella wadsworthensis
3_1_45B]
gi|319806071|gb|EFW02820.1| hypothetical protein HMPREF9464_00009 [Sutterella wadsworthensis
3_1_45B]
Length = 303
Score = 109 bits (272), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 107/180 (59%), Gaps = 3/180 (1%)
Query: 150 VGAVILIG---YVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRR 206
+G + L+G + G P + ++ +R ++++R+ PDALDL++IC E+G+ + ++
Sbjct: 122 IGTIALMGAGYFAGGILPEWVLKSMAARRYTALERSMPDALDLMVICAEAGLPFTRIVKV 181
Query: 207 VAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGT 266
V+ ++ + L+ E+ LT AEL +P R A N RT++ + LIQ++++GT
Sbjct: 182 VSRELELSAPVLAHELTLTNAELEIMPERSAALRNLAERTRVPSIEGMVSTLIQAEQFGT 241
Query: 267 SIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
+ +L + +E+RS ++ E++A L +L++P++ LP ++ ++ PA++ +I ++
Sbjct: 242 PLAQALHNIAAESRSTLILTLEERAGKLPARLSLPLMTLILPPVVAIVAAPALMRVIRSL 301
>gi|302037432|ref|YP_003797754.1| pilus assembly protein TadC [Candidatus Nitrospira defluvii]
gi|300605496|emb|CBK41829.1| Pilus assembly protein TadC [Candidatus Nitrospira defluvii]
Length = 318
Score = 108 bits (271), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 61/168 (36%), Positives = 104/168 (61%)
Query: 159 VGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPL 218
G+ P +W+ ++ RQ +I A+PDALDL+++CVE+G+S+D A+ RV +++ L
Sbjct: 145 AGWYGPDLWLQRRIESRQRNILAAFPDALDLMVVCVEAGLSLDVAITRVGQELQLMHREL 204
Query: 219 SEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSE 278
SEE+ EL +RQ A N R Q++ V++ L+Q++R+GTS+G +LR
Sbjct: 205 SEELRALYLELRTGRSRQQALRNAGLRIQLEEVQSFVALLVQTERFGTSVGQALRAHADG 264
Query: 279 TRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
R+ + ++A + AA L KL +P+I F P L++V++GPA + +I +
Sbjct: 265 LRTRQDLQATEMAAKLPVKLLLPLIFFIFPSLLVVLLGPAAIQVIRQL 312
>gi|319951073|ref|ZP_08024926.1| Type II secretion system F domain protein [Dietzia cinnamea P4]
gi|319435233|gb|EFV90500.1| Type II secretion system F domain protein [Dietzia cinnamea P4]
Length = 300
Score = 108 bits (270), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 92/321 (28%), Positives = 160/321 (49%), Gaps = 40/321 (12%)
Query: 14 LAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVA-----VEREILRKQQITSLQKDSA 68
LAV + TA S+F L +AV SG R ++VA ++ + +T + D +
Sbjct: 7 LAVFVLTA-SMFLLAFAVF-----SGRDTVRARTVANLRRGIDDGFASQVDLTGVDDDDS 60
Query: 69 SSRL-----RTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVV 123
SRL R ++R +KL+++A G +S+ L+V ++VV
Sbjct: 61 RSRLYEVARRLTPVGTVRRL-EKLSIRA--------------GRPRGWSIQRLVVAKIVV 105
Query: 124 PIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAW 183
P+I ++LG+ L P L + + V + P + + + Q+R I
Sbjct: 106 PLIVVLLGLAL------LRTNPEPLLLLLTLGTAVVCYFLPELLLQSRGQERNDEIALEL 159
Query: 184 PDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFY 243
D LD + I VE+G+ D A+ R + G PL++E++ T+ E+ R+ A+E
Sbjct: 160 ADTLDQMTIAVEAGLGFDAAMARAGRNGTG---PLAQELIRTLQEIQVGQLRRTAYEQLA 216
Query: 244 NRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMI 303
RT + +R +A+IQ+D YG S+ D LR SE R +R AE+KA + K+ P++
Sbjct: 217 LRTDVPDLRRFIRAIIQADAYGISVADVLRTQASEMRLKRRQRAEEKAQQVPVKVIFPLL 276
Query: 304 IFFLPVLILVIIGPAILSIID 324
+ LPVL +V++GP ++++++
Sbjct: 277 VCILPVLFIVLLGPTVINMME 297
>gi|167584966|ref|ZP_02377354.1| type II secretion system protein [Burkholderia ubonensis Bu]
Length = 324
Score = 108 bits (270), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 67/170 (39%), Positives = 107/170 (62%)
Query: 153 VILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIG 212
++++G +G+ P+V +S + RQ I +PDALDLL +CVE+G+S+D AL +V E++
Sbjct: 141 LVVLGAIGYYLPNVVLSRRIASRQRVIFEDFPDALDLLTVCVEAGLSLDSALLKVCEELQ 200
Query: 213 GQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSL 272
+S ++ E+ L + E+ ++ A N RT ++ + + LIQ+DR+GTSIGDSL
Sbjct: 201 FRSPIVASELDLMLLEMRSGFTKEAALRNLALRTGVEDIESFCAMLIQADRFGTSIGDSL 260
Query: 273 RVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
RVL R+ R M AE++AA + KL P+I P L+ V++GPA + I
Sbjct: 261 RVLSDMLRTRRRMRAEERAAKIALKLLFPLIFCIFPALLTVLLGPAFIHI 310
>gi|188586923|ref|YP_001918468.1| type II secretion system protein [Natranaerobius thermophilus
JW/NM-WN-LF]
gi|179351610|gb|ACB85880.1| type II secretion system protein [Natranaerobius thermophilus
JW/NM-WN-LF]
Length = 317
Score = 108 bits (270), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 66/202 (32%), Positives = 114/202 (56%), Gaps = 9/202 (4%)
Query: 127 FLI--LGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWP 184
FLI LG++ + L P + G V++I +GF P +W+S+ V R++ I+RA P
Sbjct: 119 FLIICLGLVMAVFFVTFLSTP--VWTGMVLVI--LGFIGPKLWLSSKVNTRKNEIQRALP 174
Query: 185 DALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYN 244
+ LDLL + VE+G+ + +L++VAE+ G PL+ E+ E+S +R+ A +
Sbjct: 175 EFLDLLTVSVEAGLGFESSLKKVAEEGTG---PLAVEIKRVTQEISMGKSRKEALIDLKE 231
Query: 245 RTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMII 304
R + + A+IQ+++ G I L+V E R +R AE++A KL +P+I+
Sbjct: 232 RIDLQDLSTFINAIIQAEQLGVGISRVLKVESKEFRRKRRQRAEEQAMKAPVKLLIPLIL 291
Query: 305 FFLPVLILVIIGPAILSIIDTM 326
F P + ++++GPA L I+D +
Sbjct: 292 FIFPTIFIILLGPAALRIMDNL 313
>gi|308050051|ref|YP_003913617.1| Type II secretion system F domain protein [Ferrimonas balearica DSM
9799]
gi|307632241|gb|ADN76543.1| Type II secretion system F domain protein [Ferrimonas balearica DSM
9799]
Length = 321
Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 60/172 (34%), Positives = 93/172 (54%), Gaps = 1/172 (0%)
Query: 153 VILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIG 212
V+L+G + PS + R I+ +PDALDLL++C ESG + AL+RV+ ++
Sbjct: 146 VMLMG-LAILTPSFILDRFAASRMRKIRNGFPDALDLLVVCCESGQGLLAALQRVSVELR 204
Query: 213 GQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSL 272
L+EE+LL + A F RT +D +R A+ QS R GT I ++L
Sbjct: 205 VSHKELAEELLLVCQKNRAGIELSTALHEFSERTGLDDIRGLNGAITQSLRLGTGIAETL 264
Query: 273 RVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIID 324
RV E R +R+ AE+ AA LG K+ PM+ P +V +GPA++ +++
Sbjct: 265 RVYADEYRDKRMQAAEEMAAKLGVKIIFPMLTCIWPSFFIVAVGPAVIKVME 316
>gi|119717342|ref|YP_924307.1| type II secretion system protein [Nocardioides sp. JS614]
gi|119538003|gb|ABL82620.1| type II secretion system protein [Nocardioides sp. JS614]
Length = 304
Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 59/165 (35%), Positives = 95/165 (57%), Gaps = 3/165 (1%)
Query: 161 FCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSE 220
+ P +++ R I+RA PDA+DLL I VE+G+ D A+++VA+ G PL++
Sbjct: 142 YFGPRLYLYQKSYDRSERIRRALPDAIDLLTISVEAGLGFDAAVQQVAQHTEG---PLAD 198
Query: 221 EMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETR 280
E+ + E+ +R A + RT + +R A++Q+D G I LRV E R
Sbjct: 199 ELSRVLREMQLGQSRSAALRSLSARTTVPELRGFVGAMVQADALGIPIAQVLRVQSREIR 258
Query: 281 SERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDT 325
+R AE++A + K+TVP+I LP L +V++GPA+L+I+DT
Sbjct: 259 VKRRQHAEERAQQVPVKITVPLIFCILPCLFVVVLGPAVLNIMDT 303
>gi|269960464|ref|ZP_06174836.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
gi|269834541|gb|EEZ88628.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
Length = 314
Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 69/229 (30%), Positives = 115/229 (50%), Gaps = 7/229 (3%)
Query: 100 NKLRAAGFRSEYSLNILLVVRLVVPII-FLILGIIWIFGYDKLLEYPFQLRVGAVILIGY 158
NKL AGF SL++ ++ V II +I ++++ + Y F + L +
Sbjct: 92 NKLMHAGFHQSNSLSMFYAIKSVTTIIGVMIATLVYLTIPESKYLYTF------MALAVF 145
Query: 159 VGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPL 218
VG P + ++ KRQ +I+ PD LDLL++C ESG+ + ALRRVA+++ L
Sbjct: 146 VGLVLPDFILRRMIDKRQRAIRAGVPDMLDLLVVCTESGLGFNAALRRVADELVISHPEL 205
Query: 219 SEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSE 278
++E+ ++ A RT +D + L + R G S+ +SLR +
Sbjct: 206 ADEVDTVCNKIQAGKPMPEALRELVYRTGLDELMGLVSMLSHASRIGGSLVNSLREYTED 265
Query: 279 TRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
R +R AE+ AA + K+ PM++F P +V IGPA++S+ + K
Sbjct: 266 YRDKRQQAAEEMAAKIPVKMMFPMVLFIWPCFFIVAIGPALISLAEAFK 314
>gi|269126091|ref|YP_003299461.1| type II secretion system protein [Thermomonospora curvata DSM
43183]
gi|268311049|gb|ACY97423.1| type II secretion system protein [Thermomonospora curvata DSM
43183]
Length = 307
Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 60/166 (36%), Positives = 94/166 (56%), Gaps = 3/166 (1%)
Query: 160 GFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLS 219
GF P + + N +RQ +KR+ PD LDLL++ VE+G+ D AL RVA+ G PL+
Sbjct: 141 GFFLPDILLYNAGLRRQEELKRSLPDTLDLLVVSVEAGLGFDAALTRVAQHTSG---PLA 197
Query: 220 EEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSET 279
EE+ + E+ +R A + R ++ VR AL+Q+ G SIG LR E
Sbjct: 198 EELARVLQEIRIGKSRTEALRSMGERVAVEEVRTFIAALVQASELGMSIGVVLREQAREA 257
Query: 280 RSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDT 325
R +R AE+ A + K+ P+++ LP LI+ ++GP +LSI+++
Sbjct: 258 RLKRRQRAEEMAQKVPVKVMFPVVLCILPALIITVVGPGVLSIMES 303
>gi|239814537|ref|YP_002943447.1| type II secretion system protein [Variovorax paradoxus S110]
gi|239801114|gb|ACS18181.1| type II secretion system protein [Variovorax paradoxus S110]
Length = 301
Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 56/160 (35%), Positives = 97/160 (60%)
Query: 164 PSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEML 223
P++ + +++ RQ I +PDA DL+L+CVE+G+ +D AL +V E+I +S L++E+
Sbjct: 131 PNIVLRMMIKSRQREIFENFPDAADLMLVCVEAGLGLDAALVKVTEEIRVKSEALAQELH 190
Query: 224 LTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSER 283
T E+ R+ + N RT ++ + L Q+DR+GTSIG+SLRV + R +R
Sbjct: 191 WTNLEMRAGSTREKSLRNLALRTGVEEIGTFATMLTQADRFGTSIGESLRVFSEDLRHKR 250
Query: 284 LMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSII 323
+ AE+ AA + K+ +P+++ P + VI+ PA + I+
Sbjct: 251 QVRAEELAAKVPTKMLLPLVVCIFPCISAVILTPAAIRIV 290
>gi|219850073|ref|YP_002464506.1| type II secretion system protein [Chloroflexus aggregans DSM 9485]
gi|219544332|gb|ACL26070.1| type II secretion system protein [Chloroflexus aggregans DSM 9485]
Length = 311
Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 68/249 (27%), Positives = 129/249 (51%), Gaps = 10/249 (4%)
Query: 78 KSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFG 137
++L +++ + LK E + L+ AG S N+ + +R+ + + + + + G
Sbjct: 64 RALLSYLGRFGLKQ--NQERLRANLQMAGNPGNISPNMFIGLRMALALTLATVIVPLVIG 121
Query: 138 YDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESG 197
L++ + V + +G+ P +W+ +++R+ +I +A PDALDLL I VE+G
Sbjct: 122 RLSLIQA-----LAGVAIAFMIGYILPGIWLDRKIKERKKNILKALPDALDLLCISVEAG 176
Query: 198 ISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQA 257
++ D AL+RVA+ + LS E + ++ R+ A + RT ++ V+ A
Sbjct: 177 LAFDLALQRVAQKWDNE---LSHEFQRVLQDIRLGRTRREALRDMAARTGVEDVQTFVSA 233
Query: 258 LIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGP 317
+IQ+D+ G S+ LR+ + R+ R AE+ A K+ +PM+ P L +VI+GP
Sbjct: 234 VIQADQLGVSMSKILRIQSDQLRTRRRQRAEEAAQKAPVKMLIPMVFLIFPALFVVILGP 293
Query: 318 AILSIIDTM 326
A+ I+ +
Sbjct: 294 AVPRIMSAL 302
>gi|148261008|ref|YP_001235135.1| type II secretion system protein [Acidiphilium cryptum JF-5]
gi|146402689|gb|ABQ31216.1| type II secretion system protein [Acidiphilium cryptum JF-5]
Length = 307
Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 70/230 (30%), Positives = 121/230 (52%), Gaps = 4/230 (1%)
Query: 96 ENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVIL 155
E + + LR AG R + +L + + +L+ +L ++ + L V A ++
Sbjct: 81 EELRHTLRMAGIRDKGALALFVGTKLLSLTGLSVLSLL----MSRFLHMTAGHAVIAAVV 136
Query: 156 IGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQS 215
G P + I ++ ++ DALDL++IC ++G+S++ AL RVA ++
Sbjct: 137 GAIGGLLLPDIIIQQRRKRFIQKVEGGLADALDLMVICADAGLSLESALVRVAGELQLTH 196
Query: 216 VPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVL 275
+++E LT E+ N + + RT +D ++ LIQ+ +YGT + +LR L
Sbjct: 197 PAVAQEFTLTAQEMRIGGNIRDSLNALGVRTGLDSLKRLASTLIQTLQYGTPLTQALRTL 256
Query: 276 VSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDT 325
SE R E+L E++AA L LT+PMIIF LP + LV+ GPA+L ++ +
Sbjct: 257 SSELRQEQLTRFEERAARLPVLLTLPMIIFILPCVFLVVGGPAVLKLLAS 306
>gi|87310969|ref|ZP_01093094.1| probable integral membrane protein [Blastopirellula marina DSM
3645]
gi|87286259|gb|EAQ78168.1| probable integral membrane protein [Blastopirellula marina DSM
3645]
Length = 288
Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 59/228 (25%), Positives = 118/228 (51%), Gaps = 12/228 (5%)
Query: 99 VNKLRAAGFRSEYSLNILLVVRL---VVPI-IFLILGIIWIFGYDKLLEYPFQLRVGAVI 154
+L GF S ++++ ++ RL V P+ I L + ++ IF PF + +
Sbjct: 50 TRRLVLGGFHSPTAISLFMLARLLLMVCPVFIALAIALLGIF--------PFHTTILVGV 101
Query: 155 LIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQ 214
+G++G P +W+ + Q+RQ ++ + PD +DL++ C+E G+ +A+ V +++
Sbjct: 102 CLGFIGILIPELWLRSCTQQRQKRLRESLPDFVDLVVTCLEGGMGAAEAISHVHQELTST 161
Query: 215 SVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRV 274
LS E+ L + + + +F RT ++ VR + L S R+G+++G+++
Sbjct: 162 HADLSYELGLVARDGTLGISLDKSFRRMAERTGVEEVRTLSTFLEHSQRFGSAMGEAMHE 221
Query: 275 LVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
L R +R AE++A K+ +P ++F P + +V+ GPA + I
Sbjct: 222 LSDMLRYQREQRAEERAQQASVKILIPTLLFIFPTIFVVLAGPAAIQI 269
>gi|326404408|ref|YP_004284490.1| putative type II secretion system protein [Acidiphilium multivorum
AIU301]
gi|325051270|dbj|BAJ81608.1| putative type II secretion system protein [Acidiphilium multivorum
AIU301]
Length = 307
Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 70/230 (30%), Positives = 121/230 (52%), Gaps = 4/230 (1%)
Query: 96 ENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVIL 155
E + + LR AG R + +L + + +L+ +L ++ + L V A ++
Sbjct: 81 EELRHTLRMAGIRDKGALALFVGTKLLSLTGLSVLSLL----MSRFLHMTAGHAVIAAVV 136
Query: 156 IGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQS 215
G P + I ++ ++ DALDL++IC ++G+S++ AL RVA ++
Sbjct: 137 GAIGGLLLPDIIIQQRRKRFIQKVEGGLADALDLMVICADAGLSLESALVRVAGELQLTH 196
Query: 216 VPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVL 275
+++E LT E+ N + + RT +D ++ LIQ+ +YGT + +LR L
Sbjct: 197 PAVAQEFTLTAQEMRIGGNIRDSLNALGVRTGLDSLKRLASTLIQTLQYGTPLTQALRTL 256
Query: 276 VSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDT 325
SE R E+L E++AA L LT+PMIIF LP + LV+ GPA+L ++ +
Sbjct: 257 SSELRQEQLTRFEERAARLPVLLTLPMIIFILPCVFLVVGGPAVLKLLAS 306
>gi|294139875|ref|YP_003555853.1| Flp pilus assembly protein TadC [Shewanella violacea DSS12]
gi|293326344|dbj|BAJ01075.1| Flp pilus assembly protein TadC [Shewanella violacea DSS12]
Length = 293
Score = 107 bits (267), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 81/277 (29%), Positives = 152/277 (54%), Gaps = 17/277 (6%)
Query: 60 ITSLQKDSASSRLRTRD------SKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSL 113
+ + Q+D +RL+ + SK N +L K I V ++I L AGF S+++
Sbjct: 25 VKARQRDGVVARLQLVERGAIAFSKPQNNNNNQLKSK-IRVSDDIKALLLRAGFYSDHAA 83
Query: 114 NILLVVRLVVPIIFLILGIIWI-FGYDKLLEYPFQLRVGAVI-LIGYVGFCAPSVWISNL 171
++ +V +L+V I I + + F DK++ L G V +IG +G W+
Sbjct: 84 SLFVVAKLLVAISCFIGWMAYSGFSLDKII-----LAKGVVFAVIGGIGV---EHWVKFR 135
Query: 172 VQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSF 231
+ S I A PDALDL+++CVESG++++ RV +++ S LS E L+T AEL
Sbjct: 136 ARLVSSRIAGATPDALDLMVVCVESGLTLEAVFGRVGQEMVNFSPELSREWLITEAELRL 195
Query: 232 LPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKA 291
L +R A +N RT + + N AL Q+++YG+ I S+R++ S++R + + E+K
Sbjct: 196 LDSRPQALKNLALRTGIIEIENMVIALSQAEKYGSPIAKSMRLIASDSRQHQYLALEEKV 255
Query: 292 ASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMKD 328
+ K+++P+++ + ++++I+ P I+ ++ ++ +
Sbjct: 256 GKIPAKMSMPLVVLVMIPVVVLIVAPTIIELMTSIGE 292
>gi|84387237|ref|ZP_00990258.1| Flp pilus assembly protein TadC [Vibrio splendidus 12B01]
gi|84377884|gb|EAP94746.1| Flp pilus assembly protein TadC [Vibrio splendidus 12B01]
Length = 323
Score = 106 bits (264), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 74/278 (26%), Positives = 133/278 (47%), Gaps = 22/278 (7%)
Query: 58 QQITSLQKDSASSRLRTRDS----KSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSL 113
+++ + +D A + + D +SL F+ K N K +E KL AGF + SL
Sbjct: 52 KKLRQISEDGAPTGRKPYDFSNTLESLSPFISKGNKKD---NETYSEKLMHAGFHEKSSL 108
Query: 114 NILLVVRLVVPII-----FLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWI 168
++ ++++ +I F++ I Y+ LL ++ ++G P++ +
Sbjct: 109 SVFYALKVLSSLIGIVAAFMVYYIALGGDYNNLL----------IMTCVFLGTFTPNIIL 158
Query: 169 SNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAE 228
S L ++RQ I+ PDALDLL++C ESG+ + AL RVA ++ ++E+ A+
Sbjct: 159 SKLQKERQKKIRNGVPDALDLLVVCTESGLGFNAALGRVASELYVSQPEFADELETVFAK 218
Query: 229 LSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAE 288
+ A RT + + L + R G S+ +LR + R +R AE
Sbjct: 219 IQAGVTMPDALRQLIERTGLVELEGLVSLLSHASRMGGSLAQTLRDYTEDFRDKRQQAAE 278
Query: 289 KKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
+ AA + K+ PM+IF P +V +GP +L ++D +
Sbjct: 279 EIAAKIPTKMLFPMLIFIWPCFFIVALGPGLLIVMDAL 316
>gi|197118215|ref|YP_002138642.1| Flp pilus assembly protein [Geobacter bemidjiensis Bem]
gi|197087575|gb|ACH38846.1| Flp pilus assembly protein, putative [Geobacter bemidjiensis Bem]
Length = 304
Score = 105 bits (262), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 65/230 (28%), Positives = 112/230 (48%), Gaps = 13/230 (5%)
Query: 104 AAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILI-----GY 158
AAGF+ E ++ + L +L L + GY L P ++ ++
Sbjct: 83 AAGFKKE-AVYVFLGAKL-------FLAFLLPAGYLMLFALPRGTMASSISILVATACAV 134
Query: 159 VGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPL 218
G+ P++W+ R+++I A PD LDLL +CVE+G+ +D A+ + AE+ ++ PL
Sbjct: 135 AGYLLPTIWLDRRAGVRKTAIFHALPDVLDLLTVCVEAGLGLDAAIIKTAENFQEKNCPL 194
Query: 219 SEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSE 278
E I E+ R A + RT +D ++ LIQ+++ GTS+G +LR+
Sbjct: 195 IAEFNAVILEIRAGRPRSEALKGLAERTTLDDIKALVSMLIQTEKLGTSLGKTLRIYSDS 254
Query: 279 TRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMKD 328
R++R AE++AA K+ P+ P ++V++ PA I K
Sbjct: 255 LRTKRKQLAEERAAKTAVKMLFPLTFCVFPAFMVVLLVPAFFRIFQMFKH 304
>gi|317154600|ref|YP_004122648.1| type II secretion system F domain-containing protein [Desulfovibrio
aespoeensis Aspo-2]
gi|316944851|gb|ADU63902.1| Type II secretion system F domain protein [Desulfovibrio
aespoeensis Aspo-2]
Length = 317
Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 64/166 (38%), Positives = 93/166 (56%)
Query: 159 VGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPL 218
+G P VW+ KR+ ++ PDALDLL++CVESG+ +DQAL RV ++ +
Sbjct: 145 LGVYGPEVWLRRRTTKRRLAVANELPDALDLLVVCVESGMGLDQALDRVCHEMRTSGPVI 204
Query: 219 SEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSE 278
S E L EL R A R +D + + T L+Q+D +G S+G +LRV
Sbjct: 205 SAEFKLLTLELRAGKGRGDALRGLSERVGLDDLNSLTSLLVQADIFGISVGRTLRVYSDA 264
Query: 279 TRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIID 324
R++R AE+KAA L L +P+I F LP L + I+GPA++ ID
Sbjct: 265 MRTKRSQRAEEKAAKLPVLLLLPLIGFILPALFIAIMGPAVILFID 310
>gi|315181052|gb|ADT87966.1| Flp pilus assembly protein TadC [Vibrio furnissii NCTC 11218]
Length = 318
Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 67/273 (24%), Positives = 134/273 (49%), Gaps = 5/273 (1%)
Query: 50 VEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRS 109
++R++ ++ +++ ++ R + +L + ++ K I E++ ++L AG+
Sbjct: 45 IQRQLEEIRKAGTVKTPGNLTKKRDKIHNTLESIAPIMSPKNIKERESVRHQLMHAGYHD 104
Query: 110 EYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWIS 169
+LN ++++ + + + + F Y + V+ +G P+ +
Sbjct: 105 ASALNTFYALKVLSTLAGVSISALMYFLYPDMKNLKL-----IVVFSVAMGLFLPNFLLD 159
Query: 170 NLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAEL 229
+V+KR+S IK PDALDLL++C ESG+ + ALRRVA+++ L++E+ A++
Sbjct: 160 RMVKKRKSRIKGGIPDALDLLVVCTESGLGFNAALRRVADELMISHPDLADELDTVCAKI 219
Query: 230 SFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEK 289
A RT + + L + R G SI +LR + R +R E E+
Sbjct: 220 KAGVEMSEAMAQLVERTGLTEISGLVSMLAHASRIGGSISQTLRDYTEDFRDKRNQEIEE 279
Query: 290 KAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
AA + K+ P+++F P +V +GP++LS+
Sbjct: 280 IAAKIPTKMIFPLLLFIWPCFFIVAVGPSMLSL 312
>gi|258621455|ref|ZP_05716489.1| Flp pilus assembly protein TadC [Vibrio mimicus VM573]
gi|258627496|ref|ZP_05722277.1| Flp pilus assembly protein TadC [Vibrio mimicus VM603]
gi|262171240|ref|ZP_06038918.1| type II/IV secretion system protein TadC associated with Flp pilus
assembly [Vibrio mimicus MB-451]
gi|258580302|gb|EEW05270.1| Flp pilus assembly protein TadC [Vibrio mimicus VM603]
gi|258586843|gb|EEW11558.1| Flp pilus assembly protein TadC [Vibrio mimicus VM573]
gi|261892316|gb|EEY38302.1| type II/IV secretion system protein TadC associated with Flp pilus
assembly [Vibrio mimicus MB-451]
Length = 314
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 66/233 (28%), Positives = 121/233 (51%), Gaps = 11/233 (4%)
Query: 97 NIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPF-QLRVGAVIL 155
+I +L AGF + +L++ ++ F ILG F L+ + + G +++
Sbjct: 89 SIRTQLMHAGFHNRDALSLFYALK----TSFAILG----FSGAALVFFLLPDMDNGTLVM 140
Query: 156 IGYV--GFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGG 213
+ V G P++ + + V++RQ +I+ PDALDLL++C ESG+ + ALR+VA+++
Sbjct: 141 LVSVAGGLYLPNMGLHHFVKERQRTIRAGVPDALDLLVVCTESGLGFNAALRKVADELAI 200
Query: 214 QSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLR 273
++E+ A++ AF+ RT + +R L + + G S+ +LR
Sbjct: 201 SHPEFADELDTVCAKIKAGVEMHTAFDELVARTGLTEIRGLVNMLSHASKIGGSLSQTLR 260
Query: 274 VLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
+ R +R E E+ AA + K+ P+++F P +V IGPA+LS+ D +
Sbjct: 261 DYTEDFRDKRNQEVEEIAAKIPTKMIFPLLLFIWPCFFIVAIGPALLSLSDAL 313
>gi|116623251|ref|YP_825407.1| type II secretion system protein [Candidatus Solibacter usitatus
Ellin6076]
gi|116226413|gb|ABJ85122.1| type II secretion system protein [Candidatus Solibacter usitatus
Ellin6076]
Length = 304
Score = 104 bits (260), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 58/164 (35%), Positives = 89/164 (54%)
Query: 160 GFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLS 219
G+ AP ++ V +R+ +I+R P+ LDL+++CVESG+ IDQ +VA+++ +
Sbjct: 131 GYLAPMQYVQFCVGRRRKAIERGLPNTLDLMVVCVESGLGIDQTTLQVAKELHWAHPEIC 190
Query: 220 EEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSET 279
E + EL R A N RT +D V+ L+Q+DR+GTSI SLR
Sbjct: 191 AEFTVMNLELRAGIRRAEALHNLAERTGVDDVKKLVAVLVQTDRFGTSIAQSLRGHAEYL 250
Query: 280 RSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSII 323
R+ AE++A+ L KL P+ LP L +V IGP I ++
Sbjct: 251 RTMARQRAEERASKLAVKLVFPIFFCVLPSLFVVTIGPVITRLV 294
>gi|269836553|ref|YP_003318781.1| type II secretion system protein [Sphaerobacter thermophilus DSM
20745]
gi|269785816|gb|ACZ37959.1| type II secretion system protein [Sphaerobacter thermophilus DSM
20745]
Length = 307
Score = 104 bits (260), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 59/169 (34%), Positives = 95/169 (56%), Gaps = 3/169 (1%)
Query: 157 GYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSV 216
G +G+ P VW+ N +++R+S+I RA PDA+DLL I VE+G+ D AL+RV E +
Sbjct: 139 GGIGYLLPGVWLGNRIKRRKSAIIRALPDAIDLLTISVEAGLGFDPALQRVVEKWDNE-- 196
Query: 217 PLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLV 276
L+ E ++E+ +R+ A + RT +D + A++Q+D+ G SI LRV
Sbjct: 197 -LTREFARMLSEIRMGQSRREALRDLAERTNVDDLNVFVSAVVQADQLGVSITQVLRVQS 255
Query: 277 SETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDT 325
+ R R AE++A K+ PM+ P L +V++GPA+ + D
Sbjct: 256 KQMRMRRRQRAEEQAHKAPVKMIFPMVFLIFPALYIVLLGPAVPIVWDA 304
>gi|219883050|ref|YP_002478214.1| type II secretion system protein [Arthrobacter chlorophenolicus A6]
gi|219862056|gb|ACL42397.1| type II secretion system protein [Arthrobacter chlorophenolicus A6]
Length = 293
Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 75/276 (27%), Positives = 141/276 (51%), Gaps = 19/276 (6%)
Query: 52 REILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENI--VNKLRA-AGFR 108
RE++R+ ++ S +DS + R + + + I +++L A AG
Sbjct: 31 REVVRENLFRGFEESS-------KDSTAGRRWSLAATARRFTMPRAIARLDRLHALAGRP 83
Query: 109 SEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWI 168
+ + L ++ + V+ ++ +LG++ G P L V AV + Y P + +
Sbjct: 84 AAWPLERVIAAKPVLAVVAFLLGLLLYTGRPG---APLMLLVIAVTVTAYF---VPDLLL 137
Query: 169 SNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAE 228
+ Q+RQ I PD LD ++I VE+G+ D A+ R + G PL+ E++ T+ +
Sbjct: 138 QSRGQERQKLIGLELPDTLDQMMIAVEAGLGFDSAMARAGDKGKG---PLANELVRTLQD 194
Query: 229 LSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAE 288
+ +R+ A+E RT + + ++++Q+D YG SI LR E R +R AE
Sbjct: 195 MQIGRSRREAYEALGERTSVPDLDAFIRSVVQADIYGISISKVLRTQAGEIRLKRRQRAE 254
Query: 289 KKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIID 324
+KA + K+ +P+++ LPVL + ++GPA+L++I+
Sbjct: 255 EKAMQIPVKVIIPLMLCILPVLFIALLGPAVLNVIN 290
>gi|262165914|ref|ZP_06033651.1| type II/IV secretion system protein TadC associated with Flp pilus
assembly [Vibrio mimicus VM223]
gi|262025630|gb|EEY44298.1| type II/IV secretion system protein TadC associated with Flp pilus
assembly [Vibrio mimicus VM223]
Length = 314
Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 65/232 (28%), Positives = 120/232 (51%), Gaps = 9/232 (3%)
Query: 97 NIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILI 156
+I +L AGF + +L++ ++ F ILG+ G + + G ++++
Sbjct: 89 SIRTQLMHAGFHNRDALSLFYALK----TSFAILGVS---GAALVFFLLPDMDNGTLVML 141
Query: 157 GYV--GFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQ 214
V G P++ + + V++RQ +I+ PDALDLL++C ESG+ + ALR+VA+++
Sbjct: 142 VSVAGGLYLPNMGLHHFVKERQRTIRAGVPDALDLLVVCTESGLGFNAALRKVADELTIS 201
Query: 215 SVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRV 274
++E+ A++ AF+ RT + +R L + + G S+ +LR
Sbjct: 202 HPEFADELDTVCAKIKAGVEMHTAFDELVARTGLTEIRGLVNMLSHASKIGGSLSQTLRD 261
Query: 275 LVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
+ R +R E E+ AA + K+ P+++F P +V IGPA+LS+ D +
Sbjct: 262 YTEDFRDKRNQEVEEIAAKIPTKMIFPLLLFIWPCFFIVAIGPALLSLSDAL 313
>gi|260771470|ref|ZP_05880395.1| type II/IV secretion system protein TadC associated with Flp pilus
assembly [Vibrio furnissii CIP 102972]
gi|260613596|gb|EEX38790.1| type II/IV secretion system protein TadC associated with Flp pilus
assembly [Vibrio furnissii CIP 102972]
Length = 318
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 67/273 (24%), Positives = 134/273 (49%), Gaps = 5/273 (1%)
Query: 50 VEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRS 109
++R++ ++ +++ ++ R + +L + ++ K I E++ ++L AG+
Sbjct: 45 IQRQLEEIRKEGTVKTPGNLAKKRDKIHNTLESIAPIMSPKNIKERESVRHQLMHAGYHD 104
Query: 110 EYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWIS 169
+LN ++++ + + + + F Y + V+ +G P+ +
Sbjct: 105 ASALNTFYALKVLSTLAGVSISALMYFLYPDMKNLKL-----IVVFSVAMGLFLPNFLLD 159
Query: 170 NLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAEL 229
+V+KR+S IK PDALDLL++C ESG+ + ALRRVA+++ L++E+ A++
Sbjct: 160 RMVKKRKSRIKGGIPDALDLLVVCTESGLGFNAALRRVADELMISHPDLADELDTVCAKI 219
Query: 230 SFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEK 289
A RT + + L + R G SI +LR + R +R E E+
Sbjct: 220 KAGVEMSEAMAQLVERTGLTEISGLVSMLAHASRIGGSISQTLRDYTEDFRDKRNQEIEE 279
Query: 290 KAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
AA + K+ P+++F P +V +GP++LS+
Sbjct: 280 IAAKIPTKMIFPLLLFIWPCFFIVAVGPSMLSL 312
>gi|28899184|ref|NP_798789.1| putative tight adherence TadC-like transmembrane protein [Vibrio
parahaemolyticus RIMD 2210633]
gi|153836802|ref|ZP_01989469.1| Flp pilus assembly protein TadC [Vibrio parahaemolyticus AQ3810]
gi|260361577|ref|ZP_05774604.1| Flp pilus assembly protein TadC [Vibrio parahaemolyticus K5030]
gi|260876734|ref|ZP_05889089.1| Flp pilus assembly protein TadC [Vibrio parahaemolyticus AN-5034]
gi|260898188|ref|ZP_05906684.1| Flp pilus assembly protein TadC [Vibrio parahaemolyticus Peru-466]
gi|260900405|ref|ZP_05908800.1| Flp pilus assembly protein TadC [Vibrio parahaemolyticus AQ4037]
gi|28807408|dbj|BAC60673.1| putative tight adherence TadC-related transmembrane protein [Vibrio
parahaemolyticus RIMD 2210633]
gi|149749948|gb|EDM60693.1| Flp pilus assembly protein TadC [Vibrio parahaemolyticus AQ3810]
gi|308089100|gb|EFO38795.1| Flp pilus assembly protein TadC [Vibrio parahaemolyticus Peru-466]
gi|308091488|gb|EFO41183.1| Flp pilus assembly protein TadC [Vibrio parahaemolyticus AN-5034]
gi|308109137|gb|EFO46677.1| Flp pilus assembly protein TadC [Vibrio parahaemolyticus AQ4037]
gi|308113997|gb|EFO51537.1| Flp pilus assembly protein TadC [Vibrio parahaemolyticus K5030]
gi|328474278|gb|EGF45083.1| putative tight adherence TadC-like transmembrane protein [Vibrio
parahaemolyticus 10329]
Length = 313
Score = 103 bits (258), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 66/229 (28%), Positives = 115/229 (50%), Gaps = 5/229 (2%)
Query: 100 NKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYV 159
NKL AGF SL++ ++ + I+ +++ ++ Y + E + A L ++
Sbjct: 90 NKLMHAGFHQSNSLSMFYAIKSITTILGIMIAVLV---YLTVPESKYLYTYMA--LSAFI 144
Query: 160 GFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLS 219
G P + +V KRQ +I+ PD LDLL++C ESG+ + ALRRVA++I L+
Sbjct: 145 GLLIPDFMLRRMVNKRQQAIRAGVPDMLDLLVVCTESGLGFNAALRRVADEIVISHPELA 204
Query: 220 EEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSET 279
+E+ ++ + RT ++ + L + R G S+ +SLR +
Sbjct: 205 DEVDTVCNKIQAGKPMPESLRELVVRTGLEELMGLVSMLSHASRIGGSLVNSLREYTEDY 264
Query: 280 RSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMKD 328
R +R AE+ AA + K+ PM+IF P +V IGPA++S+ + +
Sbjct: 265 RDKRQQAAEEIAAKIPVKMMFPMVIFIWPCFFIVAIGPALISLAEAFSN 313
>gi|23009311|ref|ZP_00050407.1| COG2064: Flp pilus assembly protein TadC [Magnetospirillum
magnetotacticum MS-1]
Length = 195
Score = 103 bits (258), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 60/179 (33%), Positives = 101/179 (56%), Gaps = 4/179 (2%)
Query: 17 AITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRD 76
A+ T ++ + ++ ++ P + + +L KRMK V+ ERE +R+++ L LRT
Sbjct: 17 AVLTGIAAAATVFTLIQPLIETDQLGKRMKLVSDEREQIRQRERERLNNRVT---LRTEP 73
Query: 77 SKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIF 136
++ V++ NL L + KL AG+R + L RLVVPI+ + + ++F
Sbjct: 74 KAYMKRVVERFNLSRWLGTDTAKIKLTMAGYRGAGAETAFLFFRLVVPIVLTVGALFYLF 133
Query: 137 GYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVE 195
+ +L+ P +R G + G++G P V++SN + KRQ+ I+RA PDAL+L LICVE
Sbjct: 134 VLE-VLDQPPLIRFGLSLFAGFIGLKLPEVYLSNRISKRQAEIRRAGPDALELWLICVE 191
>gi|320161469|ref|YP_004174693.1| putative bacterial type II secretion system protein [Anaerolinea
thermophila UNI-1]
gi|319995322|dbj|BAJ64093.1| putative bacterial type II secretion system protein [Anaerolinea
thermophila UNI-1]
Length = 319
Score = 103 bits (258), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 66/231 (28%), Positives = 118/231 (51%), Gaps = 7/231 (3%)
Query: 96 ENIVNKLRAAGFRSEYSLNILLVVRLVVPIIF-LILGIIWIFGYDKLLEYPFQLRVGAVI 154
++I KL AG + + L ++ + F +L + FG +PF + V+
Sbjct: 88 QDINRKLELAGNPGKLDATVFLALQFIAGGFFGAVLFLAMYFGQSN---WPFGQKFLVVL 144
Query: 155 LIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQ 214
+GF P +W+++ + +RQ I+++ PDALDLL ICVE+G+ D A+ +VAE +
Sbjct: 145 GGTLLGFFFPQIWLTSKISRRQKEIRKSMPDALDLLTICVEAGLGFDAAMAKVAEKWESE 204
Query: 215 SVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRV 274
LS I E+ R+ A + R + + + A+IQS++ G S+ LR+
Sbjct: 205 ---LSLAFARVIQEIQLGKTRRDALRDMAERIGIPEMTSFVAAVIQSEQLGVSMAKVLRI 261
Query: 275 LVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDT 325
+ R R AE++A K+ +PM + P L++V++ PA L ++++
Sbjct: 262 QSDQMRVRRRQAAEEEAHKAPVKMLIPMALLIFPSLMIVLMTPAALRLMNS 312
>gi|172065281|ref|YP_001815993.1| type II secretion system protein [Burkholderia ambifaria MC40-6]
gi|171997523|gb|ACB68440.1| type II secretion system protein [Burkholderia ambifaria MC40-6]
Length = 324
Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 65/170 (38%), Positives = 105/170 (61%)
Query: 153 VILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIG 212
++ + +G+ P+V +S + RQ I +PDALDLL +CVE+G+ +D AL RV+E++
Sbjct: 142 LVALAGIGYYVPNVILSRRIATRQRVIFEDFPDALDLLTVCVEAGLGLDAALMRVSEELR 201
Query: 213 GQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSL 272
+S +S E+ L + E+ ++ A NF RT + + + LIQ+DR+GTSI +SL
Sbjct: 202 FRSEVVSGELDLLLLEMRSGFTKETALRNFALRTGTEDIESFCAMLIQADRFGTSIAESL 261
Query: 273 RVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
RVL R+ R M AE++AA + KL P+I P L+ V++GPA++ +
Sbjct: 262 RVLSDMLRTRRRMRAEERAAKIALKLLFPLIFNIFPALMCVLLGPAMIHV 311
>gi|260776710|ref|ZP_05885605.1| flp pilus assembly protein TadC [Vibrio coralliilyticus ATCC
BAA-450]
gi|260607933|gb|EEX34198.1| flp pilus assembly protein TadC [Vibrio coralliilyticus ATCC
BAA-450]
Length = 314
Score = 103 bits (257), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 74/277 (26%), Positives = 134/277 (48%), Gaps = 13/277 (4%)
Query: 57 KQQITSLQKDSASSRLRT-----RDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEY 111
K ++ L++ + S +L+ +SL +K N K E+I KL AG+
Sbjct: 46 KLKLEQLRQSTRSDKLKKSRRLDHTLESLAPVMKPSNSKE---SESIRQKLMHAGYHDAN 102
Query: 112 SLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNL 171
+L + + + + +G+ G+ L L + V +G G P++ + +L
Sbjct: 103 ALTVFYAFKGMT----VAVGLGLAAGFYFLTPDMAMLNLVMVASVGG-GLYVPNILLGHL 157
Query: 172 VQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSF 231
V+KRQS I+ PDALDL+++C ESG+ + ALRRVA+++ ++E+ +++
Sbjct: 158 VKKRQSRIRGGIPDALDLMVVCTESGLGFNSALRRVADEVAISHPDFADELDTVCVKINA 217
Query: 232 LPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKA 291
AF + RT + + L + R G S+ +LR + R +R E E+ A
Sbjct: 218 GVEMSDAFNDLIERTGLIEIAGLVTMLAHASRIGGSLAQTLREYTDDYRDKRNQEVEEIA 277
Query: 292 ASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMKD 328
A + K+ P+++F P +V IGP++L T+ +
Sbjct: 278 AKIPTKMIFPLLLFIWPCFFIVAIGPSMLLFTSTLGN 314
>gi|297618076|ref|YP_003703235.1| type II secretion system F domain protein [Syntrophothermus
lipocalidus DSM 12680]
gi|297145913|gb|ADI02670.1| Type II secretion system F domain protein [Syntrophothermus
lipocalidus DSM 12680]
Length = 295
Score = 103 bits (257), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 95/175 (54%), Gaps = 3/175 (1%)
Query: 153 VILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIG 212
++L+G G P ++++ ++R I ++ PD LDLL + VE+G+ D AL++V E
Sbjct: 124 LVLLGMAGLLLPDMYLNLCRRQRSEGILKSLPDVLDLLSVSVEAGLGFDAALQKVVEKSQ 183
Query: 213 GQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSL 272
G PL++E + E+ R+ A + R ++D V A++Q+D G SI + L
Sbjct: 184 G---PLADEFDTALNEIRMGKPRREALRDMARRVEVDDVSTFVGAVVQADTLGVSISNVL 240
Query: 273 RVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
V + R +R AE+KA K+ +PM+ F P + +V++GPA+L I K
Sbjct: 241 TVQAEQVRQKRRQRAEEKAQKAPVKILIPMLFFIFPTIFIVLLGPALLQIGKVFK 295
>gi|115361041|ref|YP_778178.1| type II secretion system protein [Burkholderia ambifaria AMMD]
gi|115286369|gb|ABI91844.1| type II secretion system protein [Burkholderia ambifaria AMMD]
Length = 323
Score = 103 bits (256), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 64/164 (39%), Positives = 103/164 (62%)
Query: 159 VGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPL 218
+G+ P+V +S + RQ I +PDALDLL +CVE+G+ +D AL RV+E++ +S +
Sbjct: 147 IGYYVPNVILSRRIATRQRVIFEDFPDALDLLTVCVEAGLGLDAALMRVSEELRFRSEVV 206
Query: 219 SEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSE 278
+ E+ L + E+ ++ A NF RT ++ + + LIQ+DR+GTSI +SLRVL
Sbjct: 207 AGELDLLLLEMRSGFTKETALRNFALRTGVEDIESFCAMLIQADRFGTSIAESLRVLSDM 266
Query: 279 TRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
R+ R M AE++AA + KL P+I P L+ V++GPA++ +
Sbjct: 267 LRTRRRMRAEERAAKIALKLLFPLIFNIFPALMCVLLGPAMIHV 310
>gi|153834029|ref|ZP_01986696.1| Flp pilus assembly protein TadC [Vibrio harveyi HY01]
gi|148869584|gb|EDL68574.1| Flp pilus assembly protein TadC [Vibrio harveyi HY01]
Length = 315
Score = 102 bits (255), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 63/226 (27%), Positives = 115/226 (50%), Gaps = 7/226 (3%)
Query: 100 NKLRAAGFRSEYSLNILLVVRLVVPIIFLILG-IIWIFGYDKLLEYPFQLRVGAVILIGY 158
NKL AGF SL++ ++ + II +++ +I++ + Y + + L
Sbjct: 92 NKLMHAGFHQSNSLSMFYAIKSITTIIGVMMATLIYLTIPESKYLYTY------MALAAL 145
Query: 159 VGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPL 218
+G P + + +V KRQ +I+ PD LDLL++C ESG+ + ALRRVA+++ L
Sbjct: 146 IGLITPDMILRRMVNKRQKAIRAGIPDMLDLLVVCTESGLGFNAALRRVADELVISHPEL 205
Query: 219 SEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSE 278
++E+ ++ A RT ++ + L + R G S+ +SLR +
Sbjct: 206 ADEIDTVCNKIQAGKPMPEALRELVVRTGLEEIMGLVSMLSHASRIGGSLVNSLREYTED 265
Query: 279 TRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIID 324
R +R AE+ AA + K+ PM++F P +V +GPA++++ +
Sbjct: 266 YRDKRQQAAEEVAAKIPVKMMFPMVLFIWPCFFIVAVGPALITLAE 311
>gi|296134293|ref|YP_003641540.1| Type II secretion system F domain protein [Thermincola sp. JR]
gi|296032871|gb|ADG83639.1| Type II secretion system F domain protein [Thermincola potens JR]
Length = 304
Score = 102 bits (255), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 74/228 (32%), Positives = 123/228 (53%), Gaps = 11/228 (4%)
Query: 100 NKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIF--GYDKLLEYPFQLRVGAVILIG 157
KL AAG + S N +V++ + ++ ++GI+ + G+ P + V V L G
Sbjct: 85 RKLLAAGNPLDLSPNEFMVIQYALTLLLPVIGIVVVLPLGWS-----PVGM-VAVVALGG 138
Query: 158 YVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVP 217
+GF P ++ RQ I+ PD LDLL + VE+G+ D A+ +V E I G
Sbjct: 139 TIGFLLPEYYLKAKSAARQEEIQDTLPDVLDLLTVSVEAGLGFDAAMVKVVEKIKGV--- 195
Query: 218 LSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVS 277
LS+E + E+ R+ A ++ RT ++ V++ A+IQ+D+ G SIG+ LRV
Sbjct: 196 LSQECARMLQEVKMGKPRRDALKDLGVRTGVEDVQSFVGAVIQADQLGVSIGNVLRVQSE 255
Query: 278 ETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDT 325
+ R +R AE+KA K+ +P+IIF P + +V++GPA + ++ T
Sbjct: 256 QMRQKRRQRAEQKAMKAPVKMLIPLIIFIFPTIFIVVLGPAAIQVLKT 303
>gi|148976302|ref|ZP_01813026.1| Flp pilus assembly protein TadC [Vibrionales bacterium SWAT-3]
gi|145964396|gb|EDK29651.1| Flp pilus assembly protein TadC [Vibrionales bacterium SWAT-3]
Length = 283
Score = 102 bits (254), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 95/160 (59%), Gaps = 4/160 (2%)
Query: 167 WISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTI 226
W++ ++ + I R PDA+DL++ICV SG++++ R V E++ S LS E LLT
Sbjct: 125 WVNQVLMQ----ISRVVPDAIDLMVICVASGLTLESVFRCVGEEMRSISPALSREWLLTA 180
Query: 227 AELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLME 286
E+S L + Q A N R Q+ + N + Q+ +YGT + D+L+++ S++R +E
Sbjct: 181 TEISVLDSPQTALNNLDKRVQLPDINNVVTTMNQALQYGTPLADALKLIASDSRQYYFLE 240
Query: 287 AEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
E+ + K++ P+++F + ++ +II P +L+++ T+
Sbjct: 241 LEEWVGKIPAKMSFPLVVFIMLPVVAIIIAPIMLNLMQTL 280
>gi|254506677|ref|ZP_05118817.1| Flp pilus assembly protein TadC [Vibrio parahaemolyticus 16]
gi|219550258|gb|EED27243.1| Flp pilus assembly protein TadC [Vibrio parahaemolyticus 16]
Length = 314
Score = 102 bits (254), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 71/275 (25%), Positives = 134/275 (48%), Gaps = 9/275 (3%)
Query: 57 KQQITSLQKDSASSRLRT--RDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLN 114
K ++ L+K + +L+ R +L + L +++ +L AG+ +L
Sbjct: 46 KVRLEELKKTAPGEKLKKGRRLGNTLDSIAPTLTPSNSKESQSLRQQLMHAGYHDANALT 105
Query: 115 ILLVVRLVVPIIFL-ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQ 173
+ ++ + ++ + I +++ F D L++ V + VG P++ ++ V
Sbjct: 106 VFYAIKGMAILVGVGIAAMLYFFVPDM-----SNLKLAMVASVA-VGLYTPNIGLNYFVN 159
Query: 174 KRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLP 233
KRQS I+ PDALDLL++C ESG+ ALRRVA+++ ++E+ ++
Sbjct: 160 KRQSRIRGGVPDALDLLVVCTESGLGFSAALRRVADELMISHPDFADELDTVCVKIKAGV 219
Query: 234 NRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAAS 293
AF++ RT + + L + R G S+ +LR + R +R E E+ AA
Sbjct: 220 EMSDAFDDLVERTGIKELAGLVTMLSHASRIGGSLSQTLREYTEDFRDKRNQEIEEIAAK 279
Query: 294 LGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMKD 328
+ K+ P+++F P +V IGP++LSI T+ +
Sbjct: 280 IPTKMIFPLLLFIWPCFFIVAIGPSMLSITSTLGN 314
>gi|295700365|ref|YP_003608258.1| type II secretion system F domain protein [Burkholderia sp.
CCGE1002]
gi|295439578|gb|ADG18747.1| Type II secretion system F domain protein [Burkholderia sp.
CCGE1002]
Length = 322
Score = 102 bits (254), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 75/225 (33%), Positives = 133/225 (59%), Gaps = 8/225 (3%)
Query: 101 KLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFG---YDKLLEYPFQLRVGAVILIG 157
+L AG+RS ++ + L + + + +L ++ ++G LLE R ++++
Sbjct: 91 QLMNAGWRSANAVPVYLAAKTALALTLPLLAMLALYGSSFASSLLE-----RAIVLVVLA 145
Query: 158 YVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVP 217
G+ P+V +S RQ S+ +PDALDLL +CVE+G+ +D +L +V E+I +S
Sbjct: 146 AFGYYLPNVVLSRRTAARQRSLVEDFPDALDLLTVCVEAGLGLDASLMKVGEEIRLRSAV 205
Query: 218 LSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVS 277
++ E+ L + E+ +++ A NF RT ++ + + + LIQ++R+GTSIG SLRVL
Sbjct: 206 VASELELMLLEMRSGFSKEKALRNFSLRTGVEDIDSFSAMLIQAERFGTSIGASLRVLSD 265
Query: 278 ETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
R+ R M AE++AA + KL P++ P L++V++GPA++ I
Sbjct: 266 TLRTRRRMRAEERAAKIALKLLFPLMFCIFPALLVVLMGPAMIHI 310
>gi|311743553|ref|ZP_07717359.1| type II secretion system protein F protein [Aeromicrobium marinum
DSM 15272]
gi|311312683|gb|EFQ82594.1| type II secretion system protein F protein [Aeromicrobium marinum
DSM 15272]
Length = 298
Score = 102 bits (254), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 60/223 (26%), Positives = 123/223 (55%), Gaps = 9/223 (4%)
Query: 105 AGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAP 164
AG+ + ++ +L++++ P+I + + F + + + VG+VI V + P
Sbjct: 83 AGYPAGWTWQKILILKIAAPLILAV--AMREFAFSEFSMVNTTVGVGSVI----VAYLLP 136
Query: 165 SVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLL 224
+ +S+ ++RQ++++ PDALD ++I +ESG+ + AL AE G ++E++
Sbjct: 137 DLLLSSRARERQAAMELELPDALDKIVISLESGLGFESALMNAAETGKGD---FADELVR 193
Query: 225 TIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERL 284
T+ ++ R+ A+E NRT+ + +R ++LIQ++ G S+ +R ++ R +R
Sbjct: 194 TLQDIQVGMPRRAAYEALVNRTESEDIRRFVRSLIQAEETGVSVSTVVRNQSADMRMKRK 253
Query: 285 MEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
+ AE KA + KL P+I PVL ++++ P +++ I+ K
Sbjct: 254 LRAEGKAQQVSVKLLFPLIFCLFPVLFVIVLAPGVMTAIEGFK 296
>gi|84498181|ref|ZP_00996978.1| probable secretion system protein TadC [Janibacter sp. HTCC2649]
gi|84381681|gb|EAP97564.1| probable secretion system protein TadC [Janibacter sp. HTCC2649]
Length = 301
Score = 102 bits (253), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 57/164 (34%), Positives = 88/164 (53%), Gaps = 3/164 (1%)
Query: 161 FCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSE 220
F P + + N +RQ +++ + DALD+L +CVESG D AL +VA ++ G P++
Sbjct: 136 FFLPDLLVYNAGIRRQEQLRKGFADALDMLTVCVESGQGFDAALGQVARNVTG---PIAG 192
Query: 221 EMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETR 280
E ++E R AF+ R V+N AL+Q+DR G I LR E R
Sbjct: 193 EFARVLSEFQIGMTRGQAFQGMAERNTSPEVKNFVSALVQADRLGVPIAGVLREQTKEMR 252
Query: 281 SERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIID 324
R AE+KA + K+ P+++ PV+ +VI+GPA ++I D
Sbjct: 253 VVRRQLAEEKAQKVTVKVVFPVLLCIFPVIFVVILGPAAINIYD 296
>gi|78060306|ref|YP_366881.1| putative Flp pilus assembly protein TadC [Burkholderia sp. 383]
gi|77964856|gb|ABB06237.1| putative Flp pilus assembly protein TadC [Burkholderia sp. 383]
Length = 324
Score = 102 bits (253), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 65/173 (37%), Positives = 108/173 (62%), Gaps = 2/173 (1%)
Query: 152 AVILIGY--VGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAE 209
+ IL+ + +G+ P++ +S V+ RQ I +PDALDLL +CVE+G+ +D AL +V+E
Sbjct: 139 SAILVAFAGIGYYIPNIVLSQRVKVRQQKIFEDFPDALDLLTVCVEAGLGLDAALMKVSE 198
Query: 210 DIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIG 269
++ S ++ E+ L + E+ ++ A N RT ++ + + LIQ+DR+GTSI
Sbjct: 199 ELRFSSEVVASELDLLLLEMRSGFTKETALRNLALRTGVEDIESFCAMLIQADRFGTSIS 258
Query: 270 DSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
+SLRVL R+ R M AE++AA + KL P+I P L+LV++GPA++ +
Sbjct: 259 ESLRVLSDMLRTRRRMRAEERAAKIALKLLFPLIFCIFPALMLVLLGPAMIHV 311
>gi|197295161|ref|YP_002153702.1| flp type pilus assembly protein [Burkholderia cenocepacia J2315]
gi|195944640|emb|CAR57244.1| flp type pilus assembly protein [Burkholderia cenocepacia J2315]
Length = 324
Score = 102 bits (253), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 66/173 (38%), Positives = 109/173 (63%), Gaps = 2/173 (1%)
Query: 152 AVILIGY--VGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAE 209
+VIL+ +G+ P+V +S V+ RQ I +PDALDLL +CVE+G+ +D AL +V+E
Sbjct: 139 SVILVALAGIGYYIPNVVLSQRVKVRQQKIFEDFPDALDLLTVCVEAGLGLDAALMKVSE 198
Query: 210 DIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIG 269
++ +S ++ E+ L + E+ ++ A N RT ++ + + LIQ+DR+GTSI
Sbjct: 199 ELRFRSEVVASELDLLLLEMRSGFTKETALRNLALRTGVEDIESFCAMLIQADRFGTSIS 258
Query: 270 DSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
+SLRVL R+ R M AE++AA + KL P+I P L++V++GPA++ +
Sbjct: 259 ESLRVLSDMLRTRRRMRAEERAAKIALKLLFPLIFCIFPALMVVLLGPAMIHV 311
>gi|170700844|ref|ZP_02891833.1| type II secretion system protein [Burkholderia ambifaria IOP40-10]
gi|170134252|gb|EDT02591.1| type II secretion system protein [Burkholderia ambifaria IOP40-10]
Length = 324
Score = 102 bits (253), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 63/164 (38%), Positives = 102/164 (62%)
Query: 159 VGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPL 218
+G+ P++ ++ + RQ I +PDALDLL +CVE+G+ +D AL RV+E++ +S +
Sbjct: 148 IGYYVPNMILTRRIATRQRVIFEDFPDALDLLTVCVEAGLGLDAALMRVSEELRFRSEVV 207
Query: 219 SEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSE 278
S E+ L + E+ ++ A NF RT + + + LIQ+DR+GTSI +SLRVL
Sbjct: 208 SGELDLLLLEMRSGFTKETALRNFALRTGTEDIESFCAMLIQADRFGTSIAESLRVLSDM 267
Query: 279 TRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
R+ R M AE++AA + KL P+I P L+ V++GPA++ +
Sbjct: 268 LRTRRRMRAEERAAKIALKLLFPLIFCIFPALMCVLLGPAMIHV 311
>gi|269966900|ref|ZP_06180973.1| putative tight adherence TadC-related transmembrane protein [Vibrio
alginolyticus 40B]
gi|269828567|gb|EEZ82828.1| putative tight adherence TadC-related transmembrane protein [Vibrio
alginolyticus 40B]
Length = 313
Score = 102 bits (253), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 66/231 (28%), Positives = 113/231 (48%), Gaps = 9/231 (3%)
Query: 100 NKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGY--DKLLEYPFQLRVGAVILIG 157
NKL AGF +L++ ++ V I+ +++ + F K L L V
Sbjct: 90 NKLMHAGFHESNALSMFYAIKSVTTILGVMVAALVYFSVPESKYLYTYMALSV------- 142
Query: 158 YVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVP 217
++G P + +V KRQ +I+ PD LDLL++C ESG+ + ALRRVA+++
Sbjct: 143 FIGLLFPDFILRRMVNKRQQAIRAGVPDMLDLLVVCTESGLGFNAALRRVADELVISHPE 202
Query: 218 LSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVS 277
L++E+ ++ A RT ++ + L + R G S+ +SLR
Sbjct: 203 LADEIDTVCNKIKAGKPMPEALRELVLRTGLEELMGLVSMLSHASRIGGSLVNSLREYTE 262
Query: 278 ETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMKD 328
+ R +R AE+ AA + K+ PM++F P +V IGPA++S+ + +
Sbjct: 263 DYRDKRQQAAEEIAAKIPVKMMFPMVLFIWPCFFIVAIGPALISLAEAFSN 313
>gi|254229337|ref|ZP_04922754.1| bacterial type II secretion system protein F domain [Vibrio sp.
Ex25]
gi|262393424|ref|YP_003285278.1| type II/IV secretion system protein TadC associated with Flp pilus
assembly [Vibrio sp. Ex25]
gi|151938145|gb|EDN56986.1| bacterial type II secretion system protein F domain [Vibrio sp.
Ex25]
gi|262337018|gb|ACY50813.1| type II/IV secretion system protein TadC associated with Flp pilus
assembly [Vibrio sp. Ex25]
Length = 313
Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 66/231 (28%), Positives = 113/231 (48%), Gaps = 9/231 (3%)
Query: 100 NKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGY--DKLLEYPFQLRVGAVILIG 157
NKL AGF +L++ ++ V I+ +++ + F K L L V
Sbjct: 90 NKLMHAGFHESNALSMFYAIKSVTTILGVMVAALVYFSIPESKYLYTYMALSV------- 142
Query: 158 YVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVP 217
++G P + +V KRQ +I+ PD LDLL++C ESG+ + ALRRVA+++
Sbjct: 143 FIGLLIPDFILRRMVNKRQQAIRAGVPDMLDLLVVCTESGLGFNAALRRVADELVISHPE 202
Query: 218 LSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVS 277
L++E+ ++ A RT ++ + L + R G S+ +SLR
Sbjct: 203 LADEIDTVCNKIKAGKPMPEALRELVLRTGLEELMGLVSMLSHASRIGGSLVNSLREYTE 262
Query: 278 ETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMKD 328
+ R +R AE+ AA + K+ PM++F P +V IGPA++S+ + +
Sbjct: 263 DYRDKRQQAAEEIAAKIPVKMMFPMVLFIWPCFFIVAIGPALISLAEAFSN 313
>gi|156741661|ref|YP_001431790.1| type II secretion system protein [Roseiflexus castenholzii DSM
13941]
gi|156232989|gb|ABU57772.1| type II secretion system protein [Roseiflexus castenholzii DSM
13941]
Length = 311
Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 60/170 (35%), Positives = 100/170 (58%), Gaps = 3/170 (1%)
Query: 157 GYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSV 216
G +G+ P +W+ ++KR+ +I +A PDALDLL ICVE+G+S DQA++R+ E
Sbjct: 140 GVMGYLLPGIWLGQQIKKRKKAIIKALPDALDLLCICVEAGLSFDQAMQRLTEK---WED 196
Query: 217 PLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLV 276
PLS+E +++ R+ A ++ +R +D V+ A+IQ+++ G SIG LR+
Sbjct: 197 PLSKEFKRVLSDTRLGRPRRDAMKDMIDRCGVDDVQTFIGAVIQAEQLGVSIGRILRIQS 256
Query: 277 SETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
+ R R AE++A K+ PM+ P L +VI+GPA+ I+ ++
Sbjct: 257 DQMRIRRRQRAEEEAHKAPIKMLFPMVFLIFPALFIVILGPAVPRIMKSL 306
>gi|312139259|ref|YP_004006595.1| type ii secretion system integral membrane subunit [Rhodococcus
equi 103S]
gi|311888598|emb|CBH47910.1| putative type II secretion system integral membrane subunit
[Rhodococcus equi 103S]
Length = 296
Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 53/163 (32%), Positives = 101/163 (61%), Gaps = 3/163 (1%)
Query: 164 PSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEML 223
P + + + Q+RQ++I+ A D LD + I VE+G+ + A++R A++ G PL+EE +
Sbjct: 134 PELLLQSRGQERQAAIELALADTLDQMTIAVEAGLGFEAAMQRAAKNGKG---PLAEEFI 190
Query: 224 LTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSER 283
T+ ++ +R++A+ + RT+ +R +A+IQ+D YG +I + LR SE R +R
Sbjct: 191 RTLQDIQMGQSRRIAYLDLAARTKAPNLRRFLRAVIQADEYGVAIAEVLRTQASEMRLKR 250
Query: 284 LMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
AE+KA + K+ P++ LP + +VI+GPA++++++ +
Sbjct: 251 RQSAEEKAMKVPVKVLFPLMTCILPTIFIVILGPAVINMMEVL 293
>gi|325673436|ref|ZP_08153127.1| type II secretion system protein [Rhodococcus equi ATCC 33707]
gi|325555457|gb|EGD25128.1| type II secretion system protein [Rhodococcus equi ATCC 33707]
Length = 296
Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 53/163 (32%), Positives = 101/163 (61%), Gaps = 3/163 (1%)
Query: 164 PSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEML 223
P + + + Q+RQ++I+ A D LD + I VE+G+ + A++R A++ G PL+EE +
Sbjct: 134 PELLLQSRGQERQAAIELALADTLDQMTIAVEAGLGFEAAMQRAAKNGKG---PLAEEFI 190
Query: 224 LTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSER 283
T+ ++ +R++A+ + RT+ +R +A+IQ+D YG +I + LR SE R +R
Sbjct: 191 RTLQDIQMGQSRRIAYLDLAARTKAPNLRRFLRAVIQADEYGVAIAEVLRTQASEMRLKR 250
Query: 284 LMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
AE+KA + K+ P++ LP + +VI+GPA++++++ +
Sbjct: 251 RQSAEEKAMKVPVKVLFPLMTCILPTIFIVILGPAVINMMEVL 293
>gi|170734860|ref|YP_001773974.1| type II secretion system protein [Burkholderia cenocepacia MC0-3]
gi|169820898|gb|ACA95479.1| type II secretion system protein [Burkholderia cenocepacia MC0-3]
Length = 324
Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 62/164 (37%), Positives = 104/164 (63%)
Query: 159 VGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPL 218
+G+ P++ +S V+ RQ I +PDALDLL +CVE+G+ +D AL +V+E++ +S +
Sbjct: 148 IGYYIPNIVLSQRVKVRQRKIFEDFPDALDLLTVCVEAGLGLDAALMKVSEELRFRSEVV 207
Query: 219 SEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSE 278
+ E+ L + E+ ++ A N RT ++ + + LIQ+DR+GTSI +SLRVL
Sbjct: 208 ASELDLLLLEMRSGFTKETALRNLALRTGVEDIESFCAMLIQADRFGTSISESLRVLSDM 267
Query: 279 TRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
R+ R M AE++AA + KL P+I P L++V++GPA++ +
Sbjct: 268 LRTRRRMRAEERAAKIALKLLFPLIFCIFPALMMVLLGPAMIHV 311
>gi|86147459|ref|ZP_01065771.1| Flp pilus assembly protein TadC [Vibrio sp. MED222]
gi|85834752|gb|EAQ52898.1| Flp pilus assembly protein TadC [Vibrio sp. MED222]
Length = 323
Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 70/275 (25%), Positives = 129/275 (46%), Gaps = 19/275 (6%)
Query: 58 QQITSLQKDSASSRLR-TRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNIL 116
+QI+S + S+ T +SL F+ + N K +E KL AG+ + +L++
Sbjct: 55 KQISSGRHTSSRKPYDFTNTLESLTPFIGRGNKKD---NETYSEKLMHAGYHEKSALSVF 111
Query: 117 LVVRLVVPIIFLILGIIWIF-----GYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNL 171
+++ ++ + + + Y+ LL ++ +VG P+ +S +
Sbjct: 112 YAFKVLSALVGFVCAFMVFYLAIGGSYNNLL----------IVTCIFVGTFLPNFILSKM 161
Query: 172 VQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSF 231
+ RQ IK PDALDLL++C ESG+ + AL RVA ++ L++E+ A++
Sbjct: 162 QKDRQRKIKNGVPDALDLLVVCTESGLGFNAALGRVANELYISQPELADELDTVFAKIQA 221
Query: 232 LPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKA 291
A RT + + L + R G S+ +LR + R +R AE+ A
Sbjct: 222 GVTMPDALSQLVERTGLHELDGLVSLLSHASRMGGSLAQTLRDYTEDFRDKRQQAAEEIA 281
Query: 292 ASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
A + K+ PM++F P +V +GP ++ ++D +
Sbjct: 282 AKIPTKMLFPMLLFIWPCFFIVALGPGMMIVMDAL 316
>gi|107028240|ref|YP_625335.1| type II secretion system protein [Burkholderia cenocepacia AU 1054]
gi|116687151|ref|YP_840398.1| type II secretion system protein [Burkholderia cenocepacia HI2424]
gi|105897404|gb|ABF80362.1| type II secretion system protein [Burkholderia cenocepacia AU 1054]
gi|116652866|gb|ABK13505.1| type II secretion system protein [Burkholderia cenocepacia HI2424]
Length = 324
Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 62/164 (37%), Positives = 104/164 (63%)
Query: 159 VGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPL 218
+G+ P++ +S V+ RQ I +PDALDLL +CVE+G+ +D AL +V+E++ +S +
Sbjct: 148 IGYYIPNIVLSQRVKVRQRKIFEDFPDALDLLTVCVEAGLGLDAALMKVSEELRFRSEVV 207
Query: 219 SEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSE 278
+ E+ L + E+ ++ A N RT ++ + + LIQ+DR+GTSI +SLRVL
Sbjct: 208 ASELDLLLLEMRSGFTKETALRNLALRTGVEDIESFCAMLIQADRFGTSISESLRVLSDM 267
Query: 279 TRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
R+ R M AE++AA + KL P+I P L++V++GPA++ +
Sbjct: 268 LRTRRRMRAEERAAKIALKLLFPLIFCIFPALMMVLLGPAMIHV 311
>gi|13471027|ref|NP_102596.1| integral membrane protein [Mesorhizobium loti MAFF303099]
gi|14021771|dbj|BAB48382.1| probable integral membrane protein [Mesorhizobium loti MAFF303099]
Length = 305
Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 73/268 (27%), Positives = 135/268 (50%), Gaps = 17/268 (6%)
Query: 64 QKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVN---KLRAAGFRSEYSLNILLVVR 120
QK +A+ +R R K + F K + EN+ KL AG+ ++ ++R
Sbjct: 48 QKKNANV-VRERAVKRAQEFYAKSD------PENVARLRMKLIQAGYMEPRAVGTFFIIR 100
Query: 121 LVVPIIFLILGIIWIFGYDKLL---EYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQS 177
L+ G I F ++ L E R VIL G G+ P + ++ V+++
Sbjct: 101 FSA----LVGGAIGAFVLNQWLASAEATMTSRWAFVILSGVAGYFLPGLVLTQQVREKMR 156
Query: 178 SIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQV 237
+ +PD +DL+++C ++G+S++ + RV++++ LS+ + L EL +
Sbjct: 157 EYRNGFPDFMDLMIVCSDAGMSMEAGIERVSKELAKTYPALSQNLQLVSLELRAGRSLDD 216
Query: 238 AFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPK 297
A + +R +D VR+ L QS GTS+ +LRV E R +R+ AE+KA +L K
Sbjct: 217 ALKALADRLSLDEVRSFATLLQQSKELGTSLSGALRVFSDEMRHKRMSLAEEKAHALPAK 276
Query: 298 LTVPMIIFFLPVLILVIIGPAILSIIDT 325
+++P+ + LPV++++ I P I+ + +
Sbjct: 277 MSIPVTVCILPVVLMIAIIPIIVKMTGS 304
>gi|134291849|ref|YP_001115618.1| type II secretion system protein [Burkholderia vietnamiensis G4]
gi|134135038|gb|ABO59363.1| type II secretion system protein [Burkholderia vietnamiensis G4]
Length = 327
Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 63/170 (37%), Positives = 105/170 (61%)
Query: 153 VILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIG 212
++ + +G+ P+ +S + KRQ +I +PDALDLL +CVE+G+ +D AL RV+E++
Sbjct: 145 LVALAGIGYYLPNFVLSRRITKRQRTIFEDFPDALDLLTVCVEAGLGLDAALMRVSEELR 204
Query: 213 GQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSL 272
+S +S E+ L + E+ + A N RT ++ + + LIQ+DR+GTS+ +SL
Sbjct: 205 FRSEVVSGELDLLLLEMRSGFTKDTALRNLALRTGVEDIESFCAMLIQADRFGTSVAESL 264
Query: 273 RVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
RVL R+ R M AE++AA + KL P+I P L+ V++GPA++ +
Sbjct: 265 RVLSDMLRTRRRMRAEERAARIALKLLFPLIFCIFPALMGVLLGPAMIHV 314
>gi|148976656|ref|ZP_01813343.1| putative tight adherence TadC-related transmembrane protein
[Vibrionales bacterium SWAT-3]
gi|145964007|gb|EDK29265.1| putative tight adherence TadC-related transmembrane protein
[Vibrionales bacterium SWAT-3]
Length = 323
Score = 100 bits (249), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 65/254 (25%), Positives = 122/254 (48%), Gaps = 18/254 (7%)
Query: 78 KSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIF- 136
+SL F+ + N K +E KL AG+ + +L++ ++++ +I + + +
Sbjct: 76 ESLTPFIGRGNQKD---NETYSEKLMHAGYHEKSALSVFYALKILSMLIGFVCAFVVFYL 132
Query: 137 ----GYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLI 192
Y+ LL +I +VG P+ ++ + ++RQ I+ PDALDLL++
Sbjct: 133 SIGGSYNNLL----------IITCIFVGTFLPNFLLNKMQKERQRKIRNGVPDALDLLVV 182
Query: 193 CVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVR 252
C ESG+ + AL RVA ++ L++E+ A++ A RT + +
Sbjct: 183 CTESGLGFNAALGRVANELYISQPELADELDTVCAKIQAGVTMPDALTQLVERTGLHELE 242
Query: 253 NATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLIL 312
L + R G S+ +LR + R +R AE+ AA + K+ PM++F P +
Sbjct: 243 GLVSLLSHASRMGGSLAQTLRDYTDDFRDKRQQAAEEIAAKIPTKMLFPMLLFIWPCFFI 302
Query: 313 VIIGPAILSIIDTM 326
V +GP ++ ++D +
Sbjct: 303 VALGPGMMIVMDAL 316
>gi|296131925|ref|YP_003639172.1| Type II secretion system F domain protein [Thermincola sp. JR]
gi|296030503|gb|ADG81271.1| Type II secretion system F domain protein [Thermincola potens JR]
Length = 319
Score = 100 bits (249), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 63/228 (27%), Positives = 117/228 (51%), Gaps = 10/228 (4%)
Query: 96 ENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVIL 155
E + +L AG S+ ++ L +R V+ + L++ +W++ + L + +I+
Sbjct: 91 EKLERQLALAGNPSDLNVGGFLGLRFVLFVAGLLIADVWLY-------FGMPLALFVLIV 143
Query: 156 IGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQS 215
+ GF PS+WI+ L + RQ I PD LD + + +++G+ +D A+ +V + G
Sbjct: 144 LPMCGFVLPSIWINMLAKSRQEQIALGLPDFLDGMSVTLQAGVPLDAAMNQVVNHMEG-- 201
Query: 216 VPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVL 275
PL+EE+ EL R+ A+ NR + + + Q+LIQ + G I + +V+
Sbjct: 202 -PLAEELQRFNRELELGVPREEAYHRLVNRNECEELETLVQSLIQGSKLGVPIARTFKVM 260
Query: 276 VSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSII 323
+ R R + ++KAA PK+T+ P ++L I+G +L+II
Sbjct: 261 ADDMRITRFNKVKEKAAKASPKVTLVTSFIITPGVMLAILGLIVLNII 308
>gi|108756874|ref|YP_632816.1| type II secretion system protein F domain [Myxococcus xanthus DK
1622]
gi|108460754|gb|ABF85939.1| type II secretion system protein F domain protein [Myxococcus
xanthus DK 1622]
Length = 296
Score = 100 bits (249), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 66/220 (30%), Positives = 110/220 (50%), Gaps = 12/220 (5%)
Query: 105 AGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYD-KLLEYPFQLRVGAVILIGYVGFCA 163
AG Y ++ ++ V ++ LI+G+I + G+ L+ P L G
Sbjct: 82 AGEPQAYKPEDIMALQEVSAVVGLIMGLILLNGFGVSLVWAPLFL---------LFGMYY 132
Query: 164 PSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEML 223
P +W+++ V+KR I RA P +LDLL + VE+G+ AL +V E G+ PL EE+
Sbjct: 133 PLMWLNDQVKKRHLLISRALPYSLDLLTLSVEAGLDFTAALAKVVEK--GKPGPLREELQ 190
Query: 224 LTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSER 283
L + +L R+ ++ R + + ALIQ+D+ GTS+G LR+ ++ R +R
Sbjct: 191 LVLKQLKMGKTREEGLKSMIVRVDLPPLTTFVTALIQADKMGTSLGKVLRIQSTQMRIDR 250
Query: 284 LMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSII 323
AEK A K+ P+I P + +V+ GP + +
Sbjct: 251 TQRAEKLAGEAPVKMLFPLIACIFPTVFMVLFGPIVFQFM 290
>gi|260463899|ref|ZP_05812095.1| type II secretion system protein [Mesorhizobium opportunistum
WSM2075]
gi|259030274|gb|EEW31554.1| type II secretion system protein [Mesorhizobium opportunistum
WSM2075]
Length = 321
Score = 100 bits (248), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 65/236 (27%), Positives = 122/236 (51%), Gaps = 10/236 (4%)
Query: 96 ENIVN---KLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLL---EYPFQLR 149
EN+ KL AG+ ++ + ++R LI G I F ++ L + R
Sbjct: 89 ENVARLRMKLIQAGYMEPRAVGMFFIIRFSA----LIGGAIGAFVLNRWLASADATMTSR 144
Query: 150 VGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAE 209
+IL G G+ P + +S +++ + +PD +DL+++C ++G+S++ + RV++
Sbjct: 145 WAFIILSGVAGYFLPGLVLSQKTREKMREYRNGFPDFMDLMIVCSDAGMSMEAGIERVSK 204
Query: 210 DIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIG 269
++ LS+ + L EL + A + +R +D VR+ L QS GTS+
Sbjct: 205 ELARTYPALSQNLQLVSLELRAGRSLDDALKALADRLSLDEVRSFATLLQQSKELGTSLS 264
Query: 270 DSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDT 325
+LRV E R +R+ AE+KA +L K+++P+ + LPV++++ I P I+ + T
Sbjct: 265 GALRVFSDEMRHKRMSLAEEKAHALPAKMSIPVTVCILPVVLMIAIIPIIVKMTGT 320
>gi|319783869|ref|YP_004143345.1| type II secretion system F domain [Mesorhizobium ciceri biovar
biserrulae WSM1271]
gi|317169757|gb|ADV13295.1| Type II secretion system F domain [Mesorhizobium ciceri biovar
biserrulae WSM1271]
Length = 320
Score = 100 bits (248), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 64/233 (27%), Positives = 122/233 (52%), Gaps = 10/233 (4%)
Query: 96 ENIVN---KLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYP---FQLR 149
EN+ KL AG+ ++ ++R +I I +F ++ + P R
Sbjct: 89 ENVARLRMKLIQAGYMEPRAVGTFFLIRFTA----MIGTAIGVFVLNRWMASPDATMASR 144
Query: 150 VGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAE 209
VIL G G+ P + +S V++R+ + +PD +DL+++C ++G+S++ + RV++
Sbjct: 145 WTFVILSGAAGYFLPGLVLSQKVRERRREYRNGFPDFMDLMIVCSDAGMSMEAGIERVSK 204
Query: 210 DIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIG 269
++ LS+ + L EL + A + +R +D VR+ L QS GTS+
Sbjct: 205 ELAKTYPALSQNLQLVSLELRAGRSLDDALKALADRLSLDEVRSFATLLQQSKELGTSLS 264
Query: 270 DSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
+LRV + R +R+ AE+KA +L K++VP+++ LPV++++ P I+ +
Sbjct: 265 GALRVFSDDMRHKRMSLAEEKAHALPAKMSVPVVVCILPVVLMIAAIPVIVKM 317
>gi|225174956|ref|ZP_03728953.1| type II secretion system protein [Dethiobacter alkaliphilus AHT 1]
gi|225169596|gb|EEG78393.1| type II secretion system protein [Dethiobacter alkaliphilus AHT 1]
Length = 306
Score = 99.8 bits (247), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 67/238 (28%), Positives = 125/238 (52%), Gaps = 7/238 (2%)
Query: 88 NLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQ 147
NL + +N+ L AG ++N LL ++++ I +LG+ ++ ++P
Sbjct: 72 NLAPSEIRQNMEKNLIYAGHPWNLTVNTLLGLQVLFGIGLPVLGLFFLGIVAPEHQFPGL 131
Query: 148 LRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRV 207
+ ++L + P+ + +RQ I+R+ PD LDLLL+ V++G++ D AL++V
Sbjct: 132 FALLLLVLGFMM----PNTIVKRKATERQKEIQRSLPDMLDLLLVSVDAGLAFDMALKKV 187
Query: 208 AEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTS 267
A+ + G+ LS E+ + E+ R A + NRT + + A+IQ+++ G++
Sbjct: 188 ADKMPGE---LSREIGKALDEIRMGKTRIEALRSMANRTGVPDISTFISAVIQAEQLGSN 244
Query: 268 IGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDT 325
I +L V + R R M AE++A K+ P++ F P L +V++GPA + I+ T
Sbjct: 245 IAKTLDVQANTMRQRRRMRAEEEAMRAPIKMLFPLVFFIFPALFVVLLGPAGIRIVQT 302
>gi|296122064|ref|YP_003629842.1| type II secretion system protein [Planctomyces limnophilus DSM
3776]
gi|296014404|gb|ADG67643.1| type II secretion system protein [Planctomyces limnophilus DSM
3776]
Length = 426
Score = 99.8 bits (247), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 65/230 (28%), Positives = 123/230 (53%), Gaps = 10/230 (4%)
Query: 96 ENIVNKLRAAGFRSEYSLNILLVVR---LVVPIIFLILGIIWIFGYDKLLEYPFQLRVGA 152
++I + L AAG+ S ++ VR +++P++F G++ +F + + +GA
Sbjct: 165 DSIRSDLYAAGYYSPRAVMNFSAVRYLAMILPMLFC--GVLLLFVPPRFEP----IVIGA 218
Query: 153 VILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIG 212
++L+ VG+ P + + N + R++ I++A PD LD+L +CV G+++ +L R+ ++
Sbjct: 219 IVLMPIVGWSLPRLMVRNKARDRRNEIEKAMPDLLDMLNMCVSQGMTVPASLERIRVEMK 278
Query: 213 GQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSL 272
G + P E+ L I E S + + VA +NF R + V + T L+Q+ R GTS+ +L
Sbjct: 279 G-AYPALEQELKIINEQSRIGSMDVALKNFSQRVDVPEVHSFTSLLMQTSRMGTSVSGAL 337
Query: 273 RVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
R AE+K +L P ++ +P + L ++GPAI+ +
Sbjct: 338 TEYAETMRESLKQRAEEKGNRATFRLLFPTVLCLMPAVYLFLMGPAIIEL 387
>gi|303241709|ref|ZP_07328206.1| Type II secretion system F domain protein [Acetivibrio
cellulolyticus CD2]
gi|302590710|gb|EFL60461.1| Type II secretion system F domain protein [Acetivibrio
cellulolyticus CD2]
Length = 306
Score = 99.4 bits (246), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 60/235 (25%), Positives = 121/235 (51%), Gaps = 19/235 (8%)
Query: 95 DENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVI 154
++ +VN + +N+ +++ +++P F+ G+ + G D V +++
Sbjct: 84 EKKVVNAGNPFNLSMKDWINMQVIIVVILP--FITSGVCYYLGLD----------VRSIV 131
Query: 155 LIGYVGFCA----PSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAED 210
+G + C P++ ++ + +RQ I + PD LDLL + VE+G+ D AL +V +
Sbjct: 132 FVGIIEICFGLLFPNLVLNKQIAQRQKKILNSLPDVLDLLTVSVEAGLGFDGALAKVIDK 191
Query: 211 IGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGD 270
+ G P++ E + E+ ++ A ++ R + + ++IQ+D+ G SIG+
Sbjct: 192 MPG---PIAIEFENVLQEMKVGKQKRDALKDMAERVGLHDLTTFVGSIIQADQLGVSIGN 248
Query: 271 SLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDT 325
LR+ + R +R A++KA K+ +PM++F P + V+IGP I+ +I T
Sbjct: 249 VLRIQSEQMREKRRQRAKEKAMKAPVKMLIPMVLFIFPTIFSVLIGPVIIKVIYT 303
>gi|254255261|ref|ZP_04948577.1| Flp pilus assembly protein TadC [Burkholderia dolosa AUO158]
gi|124900998|gb|EAY71748.1| Flp pilus assembly protein TadC [Burkholderia dolosa AUO158]
Length = 324
Score = 99.4 bits (246), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 62/164 (37%), Positives = 103/164 (62%)
Query: 159 VGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPL 218
+G+ P++ +S V RQ I +PDALDLL +CVE+G+ +D AL +V+E++ +S +
Sbjct: 148 IGYYVPNLVLSQRVAARQQKIFEDFPDALDLLTVCVEAGLGLDAALMKVSEELRFRSDVV 207
Query: 219 SEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSE 278
+ E+ L + E+ ++ A N RT ++ + + LIQ+DR+GTSI +SLRVL
Sbjct: 208 AGELDLLLLEMRSGFTKETALRNLALRTGVEDIESFCAMLIQADRFGTSISESLRVLSDL 267
Query: 279 TRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
R+ R M AE++AA + KL P+I P L++V++GPA++ +
Sbjct: 268 LRTRRRMRAEERAAKIALKLLFPLIFCIFPALMVVLLGPAMIHV 311
>gi|54302281|ref|YP_132274.1| tight adherence TadC-like transmembrane protein [Photobacterium
profundum SS9]
gi|46915703|emb|CAG22474.1| hypothetical putative tight adherence TadC-related transmembrane
protein [Photobacterium profundum SS9]
Length = 322
Score = 99.0 bits (245), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 81/307 (26%), Positives = 151/307 (49%), Gaps = 21/307 (6%)
Query: 21 AVSIFSLIYAVVIPSLGSGELEKRMKSVA-VEREILRKQQITSLQKDSASSRLRTRDSKS 79
+V F+L A++I +L L+KR+ S++ + ++ +K +S ++ S + S
Sbjct: 29 SVVTFTLCLALLITNL-LNPLKKRLHSLSHISKDTTKKSAESSALDNTLESMDKYISPSS 87
Query: 80 L--RNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFG 137
+ RN K L L AG+ + +L +++++ +IF G++
Sbjct: 88 MKERNQTKTL--------------LMHAGYEQKQALTNFYAIKIIL-VIFAFFGVLISSK 132
Query: 138 YDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESG 197
+ L E Q + +L + P+ + +KR ++ A+PDALDLL++ E+G
Sbjct: 133 F--LPELSTQKILFYTLLAMAIATFLPNFVLQKKAKKRIQTLSNAFPDALDLLVVTTEAG 190
Query: 198 ISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQA 257
+ AL RVA +I S LS E+ + ++ +A F RT + ++
Sbjct: 191 LGFLAALNRVANEIDALSPELSSELQIVCRKVRLGVPLPIALSQFIERTGLLELQGLVSI 250
Query: 258 LIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGP 317
+ QS + G+S+GD+LR E R R+ +AE++AA +G K+ P++ P V IGP
Sbjct: 251 ISQSVKLGSSMGDTLREYAIEFRDRRMQKAEEEAAKIGTKMIFPLVTCIWPGFFTVAIGP 310
Query: 318 AILSIID 324
AI+++++
Sbjct: 311 AIIAVLE 317
>gi|168699471|ref|ZP_02731748.1| probable secretion system protein TadC [Gemmata obscuriglobus UQM
2246]
Length = 307
Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 55/160 (34%), Positives = 89/160 (55%)
Query: 163 APSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEM 222
APSV + ++KRQ I+ A PDALD++++ VE G S++ AL A++I L E+
Sbjct: 142 APSVLLGARIEKRQRLIRNALPDALDIMVLSVEGGSSLNAALMWAADEIRDVHPVLGAEL 201
Query: 223 LLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSE 282
L+ E+ + AF+ F R + R+ ALIQS++YG S+G +LR R +
Sbjct: 202 LVVQREVQLGLSMGDAFQGFARRCGIPEGRDLAAALIQSEKYGASVGKALRTFADSARQD 261
Query: 283 RLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
R AE+ A K+ PM++ P + +V++GPA + +
Sbjct: 262 RQAWAEEVAQKASVKVVFPMLLCIFPAIFIVLLGPAAVQM 301
>gi|332798625|ref|YP_004460124.1| Type II secretion system F domain-containing protein
[Tepidanaerobacter sp. Re1]
gi|332696360|gb|AEE90817.1| Type II secretion system F domain protein [Tepidanaerobacter sp.
Re1]
Length = 307
Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 71/236 (30%), Positives = 113/236 (47%), Gaps = 15/236 (6%)
Query: 95 DENIVNKLRAAGFR---SEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVG 151
+E + +L+ A R EY +LL F + ++ + Y +L LR+
Sbjct: 82 EERLNQQLKQAEIRMGAREYQAAVLL---------FTFVCVVGMVLYSTMLGLSVSLRIL 132
Query: 152 AVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDI 211
+L Y G + + KR+++I PD LDLL + V +G+ DQAL V E +
Sbjct: 133 FGMLGIYAGLVLSRFDLKRNIIKRKTAIYHQLPDTLDLLSVSVSAGLGFDQALSYVVEHM 192
Query: 212 GGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDS 271
G PL +E+ T E+S R+ A E R + D + A+ Q+D G SI +
Sbjct: 193 EG---PLIQELDTTQREISMGIPRKEALERLAARCECDEIYIFVGAINQADELGASIKNV 249
Query: 272 LRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
+ + R E++A L K+ VPM++F LPV ++I+GPAI S+I +K
Sbjct: 250 METQAAAIRLTHKQNVEEQAQKLSVKMMVPMVLFILPVTFIIILGPAIPSVISALK 305
>gi|325964126|ref|YP_004242032.1| Flp pilus assembly protein TadC [Arthrobacter phenanthrenivorans
Sphe3]
gi|323470213|gb|ADX73898.1| Flp pilus assembly protein TadC [Arthrobacter phenanthrenivorans
Sphe3]
Length = 294
Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 54/172 (31%), Positives = 97/172 (56%), Gaps = 3/172 (1%)
Query: 158 YVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVP 217
++G+ P + + + ++RQ I+ + LD +LI VE+G+ + A+ R E+ G P
Sbjct: 126 FMGYFIPDLLLYSKGKERQKVIQLELANTLDQMLISVEAGLGFEGAMARAGENGKG---P 182
Query: 218 LSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVS 277
L+EE++ T+ ++ +R+ A+ RT + +R+ QA+IQ+D YG +I LRV
Sbjct: 183 LAEELVRTLQDMQVGRSRREAYLALAERTSIPELRSFVQAIIQADTYGIAISRVLRVQAK 242
Query: 278 ETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMKDH 329
R +R AE+KA L + P++ F PVL + I+GPA+++ + T+
Sbjct: 243 VMRMKRRQRAEEKAMKLPVMILFPLLFFIFPVLFIAILGPAVINTVVTLSGQ 294
>gi|323499916|ref|ZP_08104875.1| Flp pilus assembly protein TadC [Vibrio sinaloensis DSM 21326]
gi|323315157|gb|EGA68209.1| Flp pilus assembly protein TadC [Vibrio sinaloensis DSM 21326]
Length = 314
Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 54/169 (31%), Positives = 91/169 (53%)
Query: 160 GFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLS 219
G P+V ++ +V+KRQS I+ PDALDLL++C ESG+ ALRRVA+++ +
Sbjct: 146 GLYIPNVGLNYVVKKRQSRIRGGVPDALDLLVVCTESGLGFSAALRRVADELMISHPDFA 205
Query: 220 EEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSET 279
+E+ ++ AFE+ RT + + L + R G S+ +LR +
Sbjct: 206 DELDTVCVKIKAGVEMSDAFEDLVERTGIKELAGLVTMLSHASRIGGSLSQTLREYTEDF 265
Query: 280 RSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMKD 328
R +R E E+ AA + K+ P+++F P +V IGP++L + T+ +
Sbjct: 266 RDKRNQEIEEIAAKIPTKMIFPLLLFIWPCFFIVAIGPSMLFLTATLGN 314
>gi|323529408|ref|YP_004231560.1| Type II secretion system F domain-containing protein [Burkholderia
sp. CCGE1001]
gi|323386410|gb|ADX58500.1| Type II secretion system F domain protein [Burkholderia sp.
CCGE1001]
Length = 319
Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 69/178 (38%), Positives = 106/178 (59%), Gaps = 2/178 (1%)
Query: 147 QLRVGAVIL--IGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQAL 204
Q V A+IL + +G+ P+ ++ +RQ +I +PDALDLL +CVE+G+ +D AL
Sbjct: 132 QFAVSALILAMLAAIGYYVPNAVLARCRARRQRAIVEGFPDALDLLTVCVEAGLGMDAAL 191
Query: 205 RRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRY 264
RVA ++ S ++ E+ L + EL ++ A NF RT +D + L+Q+DR+
Sbjct: 192 MRVAGEMQLASPEVASELQLMLLELRSGFTKEKALRNFALRTGVDDIDTFASMLVQADRF 251
Query: 265 GTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
GTSIG SLRV+ R+ R M AE++AA + KL P+I P L+ V++GPA + I
Sbjct: 252 GTSIGASLRVMSDTLRTRRRMRAEERAAKIALKLLFPLIFCIFPALMTVLMGPAFIHI 309
>gi|301168390|emb|CBW27980.1| putative membrane protein [Bacteriovorax marinus SJ]
Length = 404
Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 63/199 (31%), Positives = 99/199 (49%), Gaps = 5/199 (2%)
Query: 126 IFLILGI-IWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWP 184
IFLI+G I FG LE + L + + +IG VGF P +WI ++ RQ + A P
Sbjct: 206 IFLIVGFPIVFFGIRVFLEEEWPLTL--IPIIGAVGFVYPDIWIKGRIEMRQKEVIMAMP 263
Query: 185 DALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYN 244
+D+L + VE+G+ A+ +V E + LSEE I E+ +R A N
Sbjct: 264 FCVDMLALSVEAGLDFVAAMTKVVEK--AKKTALSEEFETMIKEIRIGASRAEALRNLAW 321
Query: 245 RTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMII 304
R + + + LI +D G SIG L+ L E R ++ E EK A+ K+ PM+
Sbjct: 322 RIDLIQISSFCATLIAADSVGASIGPILKALSMEIRQKKSSEVEKAGATAATKILFPMLF 381
Query: 305 FFLPVLILVIIGPAILSII 323
+P + +V+ P +L ++
Sbjct: 382 LIVPAVFIVVAAPIVLELV 400
>gi|325111219|ref|YP_004272287.1| type II secretion system F domain protein [Planctomyces
brasiliensis DSM 5305]
gi|324971487|gb|ADY62265.1| Type II secretion system F domain protein [Planctomyces
brasiliensis DSM 5305]
Length = 461
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 77/279 (27%), Positives = 143/279 (51%), Gaps = 20/279 (7%)
Query: 58 QQITSLQKD---SASSRLRTRDSKSLRNFVKKLNLKAILVD-----ENIVNKLRAAGFRS 109
+ I+ Q+D A S + RD+ + L A+L + + + +L AG+ +
Sbjct: 169 KPISGTQQDLPRVAPSEVPFRDTSDFQFGTATPALAAMLPESESRRDALKQELVEAGYYN 228
Query: 110 EYSLNILLVVR---LVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYV-GFCAPS 165
++ L VR L++P+ LI G++ +FG +L P L ++++G V G+ P
Sbjct: 229 PHAYENLAAVRYLGLMLPL--LIFGVLLVFGPPQL--EPVML---VLMIVGAVLGWSIPR 281
Query: 166 VWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLT 225
+ + KR+ I++A PD +DLL +CV G+++ AL RV+ +I ++EE+ +
Sbjct: 282 LLVRQRAAKRRREIEQALPDVIDLLNMCVSQGMTLRPALARVSWEISDTYPAMAEELRI- 340
Query: 226 IAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLM 285
+AE + L + A N R + + + T LIQ++R GT++ DSL R+
Sbjct: 341 VAEQANLGTLEHALNNMNERVDVPELHSLTTLLIQTERMGTNVSDSLTEYSDGMRATLQQ 400
Query: 286 EAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIID 324
A++KA + KL P ++ +P + ++GPA++ + D
Sbjct: 401 RADQKANAATFKLLFPTVLCLMPAVYFFLLGPAVVELSD 439
>gi|283777928|ref|YP_003368683.1| type II secretion system protein [Pirellula staleyi DSM 6068]
gi|283436381|gb|ADB14823.1| type II secretion system protein [Pirellula staleyi DSM 6068]
Length = 326
Score = 97.4 bits (241), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 65/280 (23%), Positives = 141/280 (50%), Gaps = 15/280 (5%)
Query: 56 RKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILV---DENIVNKLRA----AGFR 108
R + +T + R R + ++ V ++ A ++ DE +L+A AG
Sbjct: 40 RMESLTEGDSHAIDDRYRAKPRGMMQLLVPQIPRLAKVILPNDEATRTRLQAQLIQAGIY 99
Query: 109 SEYSLNILLVVRLVVPIIFLILGII--WIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSV 166
+ ++ + L +LV+ I ++G++ W +D G ++ PS+
Sbjct: 100 APSAMGLYLTAKLVLMTIPPVVGLVVAWFGWFDPAYAMLLGGAGGCAGML------MPSM 153
Query: 167 WISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTI 226
W++ KRQ ++ + D LDL++ C+E G+ + A+ +VA+++ L+ E+L+ +
Sbjct: 154 WLAYYRAKRQRQLRTSLADFLDLMVTCLEGGVGMQAAISQVADELRTPHPILATELLVVL 213
Query: 227 AELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLME 286
E+ + +VA + RT ++ +R+ + Q+ R+G+++ D++R L R++R
Sbjct: 214 REVEVGRSIEVALAHLAERTGLEELRSLATFVQQAQRFGSTMADAMRELSDMLRTQRETR 273
Query: 287 AEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
AE++A K+ +P ++F P + +V+ GPA + I +++
Sbjct: 274 AEERAQKASVKILIPTLLFIFPTVFVVLAGPAAIQIQESL 313
>gi|84386792|ref|ZP_00989817.1| putative type IV pilus protein [Vibrio splendidus 12B01]
gi|84378320|gb|EAP95178.1| putative type IV pilus protein [Vibrio splendidus 12B01]
Length = 283
Score = 97.4 bits (241), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 48/155 (30%), Positives = 91/155 (58%)
Query: 172 VQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSF 231
V + + I R PDA+DL+++CV SG++++ R V E++ S LS E LLT E+S
Sbjct: 126 VNQVRMQISRVIPDAVDLMVVCVASGLTLEAVFRCVGEEMRAISPALSREWLLTATEISV 185
Query: 232 LPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKA 291
L + Q A N R Q+ + N + Q+ +YGT + ++L+++ S++R +E E+
Sbjct: 186 LDSPQTALSNLDKRVQLPDINNIVTTMNQALQYGTPLAEALKLIASDSRQYHFLELEEWV 245
Query: 292 ASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
+ K++ P+++F + ++ +I+ P +LS+ T+
Sbjct: 246 GKIPAKMSFPLVVFIMLPVVGIIVVPIMLSLKQTL 280
>gi|325109819|ref|YP_004270887.1| type II secretion system F domain protein [Planctomyces
brasiliensis DSM 5305]
gi|324970087|gb|ADY60865.1| Type II secretion system F domain protein [Planctomyces
brasiliensis DSM 5305]
Length = 333
Score = 97.1 bits (240), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 94/168 (55%)
Query: 159 VGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPL 218
+G P +W+ V++RQ++ +A PD DLL+ C+ SG++I+ +++RVAE++ L
Sbjct: 149 IGVVLPGLWLDRAVRRRQATFMKAIPDLFDLLVTCLSSGLTIEASIKRVAEELRLAHPDL 208
Query: 219 SEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSE 278
+ E+ E+ + A ++F R ++ +R+ Q+ +YGT ++LRV +
Sbjct: 209 ANELARVQNEIHLGISVVDALKHFAERCNLNPIRSLAMMCEQTRQYGTRAIEALRVHANM 268
Query: 279 TRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
R++R AE++A K+ P ++ P + +V+ GPA + I +TM
Sbjct: 269 MRTQREQRAEERARKAAVKILAPTVLLIFPSVFVVVAGPAAIQIAETM 316
>gi|307726380|ref|YP_003909593.1| type II secretion system F domain-containing protein [Burkholderia
sp. CCGE1003]
gi|307586905|gb|ADN60302.1| Type II secretion system F domain protein [Burkholderia sp.
CCGE1003]
Length = 318
Score = 96.7 bits (239), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 71/185 (38%), Positives = 109/185 (58%), Gaps = 5/185 (2%)
Query: 143 EYPF---QLRVGAVIL--IGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESG 197
+ PF Q V A+IL + +G+ P+ ++ +RQ +I +PDALDLL +CVE+G
Sbjct: 124 QMPFINGQFAVSALILAMLAAIGYYLPNAVLARCRARRQRAIVEGFPDALDLLTVCVEAG 183
Query: 198 ISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQA 257
+ +D AL RVA +I S ++ E+ L + EL ++ A NF RT ++ +
Sbjct: 184 LGMDAALMRVAGEIELASPEVASELQLMLLELRSGFTKEKALRNFALRTGVEDIDTFASM 243
Query: 258 LIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGP 317
L+Q+DR+GTSIG SLRV+ R+ R M AE++AA + KL P+I P L+ V++GP
Sbjct: 244 LVQADRFGTSIGASLRVMSDTLRTRRRMRAEERAAKIALKLLFPLIFCIFPALMTVLMGP 303
Query: 318 AILSI 322
A + I
Sbjct: 304 AFIHI 308
>gi|313902406|ref|ZP_07835809.1| Type II secretion system F domain [Thermaerobacter subterraneus DSM
13965]
gi|313467337|gb|EFR62848.1| Type II secretion system F domain [Thermaerobacter subterraneus DSM
13965]
Length = 326
Score = 96.3 bits (238), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 92/167 (55%), Gaps = 3/167 (1%)
Query: 159 VGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPL 218
G+ P + +R+ + RA PD +DLL + VE+G+ +D A+++V E P+
Sbjct: 160 TGWILPDAALKARATRRKRQLARALPDVMDLLSVAVEAGLGLDGAVQKVTEKF---PAPV 216
Query: 219 SEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSE 278
S E + EL +R+ A + +R ++ +R+ A+IQ+DR G S+ LRV +
Sbjct: 217 STEFRQYLKELRLGVSREEALRSLADRAELPELRSFAAAVIQADRLGVSLARVLRVQAEQ 276
Query: 279 TRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDT 325
R +R AE++A K+ +P+++F P L +V++GPA++ I+
Sbjct: 277 LRFQRKQRAEEQAMKTPIKMLLPLVLFIFPTLFIVLLGPALIQILSA 323
>gi|220913395|ref|YP_002488704.1| type II secretion system protein [Arthrobacter chlorophenolicus A6]
gi|219860273|gb|ACL40615.1| type II secretion system protein [Arthrobacter chlorophenolicus A6]
Length = 294
Score = 96.3 bits (238), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 100/178 (56%), Gaps = 3/178 (1%)
Query: 152 AVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDI 211
A + + ++G+ P + + + Q+RQ +++ + LD +LI VE+G+ + A+ R ++
Sbjct: 120 AGLFVLFLGYFIPDLLLYSKGQERQKTMQLELANTLDQMLISVEAGLGFEGAMARAGDNG 179
Query: 212 GGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDS 271
G PL+EE++ T+ ++ +R+ ++ RT + +R+ QA++Q+D YG +I
Sbjct: 180 NG---PLAEELVRTLQDMQVGRSRRESYTALAARTSIPELRSFVQAVVQADTYGIAISRV 236
Query: 272 LRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMKDH 329
LRV R +R AE+KA L + P++ F PVL + I+GPA+++ + T
Sbjct: 237 LRVQAKVMRVKRRQRAEEKAMKLPVMILFPLLFFIFPVLFIAILGPAVINTVVTFTGQ 294
>gi|284991838|ref|YP_003410392.1| Type II secretion system F domain-containing protein
[Geodermatophilus obscurus DSM 43160]
gi|284065083|gb|ADB76021.1| Type II secretion system F domain protein [Geodermatophilus
obscurus DSM 43160]
Length = 295
Score = 95.9 bits (237), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 58/178 (32%), Positives = 98/178 (55%), Gaps = 3/178 (1%)
Query: 145 PFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQAL 204
P L V + + V + P + + + Q+RQ +I D LD + I VE+G+ + A+
Sbjct: 115 PGPLTVLMAVGVTGVAYVVPELLLYSRGQERQQAIALELADTLDQMTIAVEAGLGFEAAM 174
Query: 205 RRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRY 264
R + G PL+EE++ T+ +++ R+ A+ RT + +R +A++Q+D Y
Sbjct: 175 ARAGRNGRG---PLAEELVRTLQDIAVGQPRREAYLALAERTAVPDLRRFIRAVVQADAY 231
Query: 265 GTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
G SI D LR +E R +R AE+KA + K+ P+I+ LP L +V++GPA+L I
Sbjct: 232 GVSIADVLRTQAAEMRLKRRQRAEEKAMQIPVKVIFPLILCILPTLFIVLLGPAVLDI 289
>gi|309792339|ref|ZP_07686809.1| type II secretion system protein [Oscillochloris trichoides DG6]
gi|308225654|gb|EFO79412.1| type II secretion system protein [Oscillochloris trichoides DG6]
Length = 309
Score = 95.9 bits (237), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 61/172 (35%), Positives = 99/172 (57%), Gaps = 4/172 (2%)
Query: 155 LIGYV-GFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGG 213
+IG+V G+ P W+ ++KR+ SI +A PDALDLL I VE+G++ D AL+RV +
Sbjct: 138 MIGFVLGYMLPVTWLGQQIKKRKKSITKALPDALDLLCISVEAGLAFDLALQRVTQKWDD 197
Query: 214 QSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLR 273
+ LS E ++++ R+ A ++ RT +D V+ T A+IQ+D+ G S+ LR
Sbjct: 198 E---LSREFKKVLSDIRLGRTRREALKDLGVRTGVDDVQTFTAAVIQADQLGVSMSKILR 254
Query: 274 VLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDT 325
+ + R R AE+ A K+ PM+ P L +VI+GPA+ I+++
Sbjct: 255 LQSDQMRQRRRQRAEEAAQQAPIKMLFPMVFLIFPALFVVILGPAVPRIMES 306
>gi|119962497|ref|YP_948623.1| type II secretion system protein F [Arthrobacter aurescens TC1]
gi|119949356|gb|ABM08267.1| putative bacterial type II secretion system protein F domain
[Arthrobacter aurescens TC1]
Length = 296
Score = 95.5 bits (236), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 52/163 (31%), Positives = 92/163 (56%), Gaps = 3/163 (1%)
Query: 164 PSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEML 223
P + I +RQ +I+ P+ LD +LI VE+G+ + A+ R ++ G PL+ EML
Sbjct: 133 PDLIIHGRAAERQKAIQTELPNTLDQMLISVEAGLGFEGAMARAGQNGSG---PLAMEML 189
Query: 224 LTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSER 283
T+ ++ +R+ A+ R + +R A++Q+D YG +I + LR + R +R
Sbjct: 190 RTLQDMQAGRSRKEAYVALAERVDVHDLRAFVGAIVQADTYGIAIANVLRTQAKQMRIKR 249
Query: 284 LMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
AE++A L K+ P++ LPVL +VI+GPA+L+++ +
Sbjct: 250 RQRAEEQAMKLPVKVLFPLMFCILPVLFIVIMGPAVLNVMTNL 292
>gi|325964118|ref|YP_004242024.1| Flp pilus assembly protein TadC [Arthrobacter phenanthrenivorans
Sphe3]
gi|323470205|gb|ADX73890.1| Flp pilus assembly protein TadC [Arthrobacter phenanthrenivorans
Sphe3]
Length = 292
Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 54/162 (33%), Positives = 91/162 (56%), Gaps = 3/162 (1%)
Query: 164 PSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEML 223
P + I N KRQ I+ P+ LD LLI VE+G+ + A+ R G LS+E++
Sbjct: 132 PDLLIYNKGIKRQQEIELELPNTLDQLLISVEAGLGFEAAMARAG---GYGDGALSQELM 188
Query: 224 LTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSER 283
T+ ++ RQ A++ +R+ + +R+ +A+IQ+D+YG I LR + R +R
Sbjct: 189 RTLQDIQVGRPRQDAYQALADRSSVQDLRSFVRAVIQADKYGIGIAKVLRTQAKQARVKR 248
Query: 284 LMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDT 325
AE+KA L K+ P+++ PVL +V++GPA + I++
Sbjct: 249 RQRAEEKAMKLPVKVLFPLLLCIFPVLFIVLLGPAAIKIVEA 290
>gi|134299964|ref|YP_001113460.1| type II secretion system protein [Desulfotomaculum reducens MI-1]
gi|134052664|gb|ABO50635.1| type II secretion system protein [Desulfotomaculum reducens MI-1]
Length = 310
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 49/170 (28%), Positives = 95/170 (55%), Gaps = 3/170 (1%)
Query: 159 VGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPL 218
+G+ P +++++ ++ R++ ++++ PDALDLL + VE+G+ D AL +VAE G +
Sbjct: 144 LGWLLPDLYLNSRIRNRKTQVEKSLPDALDLLTVSVEAGLGFDGALMKVAEKTKGI---M 200
Query: 219 SEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSE 278
++E +L + E R+ A + R +D + + ++I +D G SIG+ LR +
Sbjct: 201 ADEFILMLQECHMGKPRREALRDMATRLDVDDLSSFCGSIILADTLGISIGNVLRTQSQQ 260
Query: 279 TRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMKD 328
R +R + E+ A K+ PM+ F P + ++++GPA L I+ +
Sbjct: 261 MRQKRRQKTEELAMKAPIKMLFPMVFFIFPAIFVILLGPAALQIMKAFAN 310
>gi|90411198|ref|ZP_01219211.1| hypothetical putative tight adherence TadC-related transmembrane
protein [Photobacterium profundum 3TCK]
gi|90328044|gb|EAS44365.1| hypothetical putative tight adherence TadC-related transmembrane
protein [Photobacterium profundum 3TCK]
Length = 224
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 51/161 (31%), Positives = 89/161 (55%)
Query: 164 PSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEML 223
P+ + +KR + A+PDALDLL++ E+G+ AL RVA +I S LS E+
Sbjct: 59 PNFILQKKAKKRIRKLSNAFPDALDLLVVTTEAGLGFLAALNRVANEIDAISPELSNELQ 118
Query: 224 LTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSER 283
+ ++ +A F RT + ++ + QS + G+S+GD+LR E R R
Sbjct: 119 IVCRKVRLGVPMPIALAQFIERTGLLELQGLVSIISQSVKLGSSMGDTLREYAIEFRDRR 178
Query: 284 LMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIID 324
+ +AE++AA +G K+ P++ P +V +GPAI+++++
Sbjct: 179 MQKAEEEAAKIGTKMIFPLVTCIWPGFFVVAVGPAIIAVLE 219
>gi|197106493|ref|YP_002131870.1| Flp pilus assembly protein [Phenylobacterium zucineum HLK1]
gi|196479913|gb|ACG79441.1| Flp pilus assembly protein [Phenylobacterium zucineum HLK1]
Length = 300
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 74/257 (28%), Positives = 134/257 (52%), Gaps = 25/257 (9%)
Query: 84 VKKLNLKAILVDENIVNKLRA----AGFRSEYSLNILLVVRLVVPIIFLIL--GIIWIFG 137
V++L ++ + D V+ LR+ AGF S + P+IFL + +I
Sbjct: 54 VRRLGQQSAVRDPAKVSLLRSRLMQAGFFSREA-----------PVIFLGIKAALIAAAT 102
Query: 138 YDKLLEYPFQLRVGAVILIGY---VGFCAPSVWISNLVQK-RQSSIKR----AWPDALDL 189
L+ P + ++G VG +++ + V K R+++ +R +PD LDL
Sbjct: 103 VGVLMTLPVMIGAKGGNMMGLAMAVGLSLAALYGPDQVLKSRKATREREYADGFPDLLDL 162
Query: 190 LLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMD 249
L+ VE+G+S+D A+ RV +++ + L+ + + EL R+ A+ F +R ++
Sbjct: 163 LVASVEAGLSLDAAVTRVTDELERRYPNLTVHLRFLVLELRAGRARKDAWSAFADRLAIE 222
Query: 250 CVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPV 309
R L Q++ GTS+GD+L+V + R +R++ AE+KA +L KLTVP+I+F P
Sbjct: 223 DARALATMLRQAEEMGTSLGDTLQVFSQDMRQKRMLRAEEKALALSAKLTVPLILFIFPS 282
Query: 310 LILVIIGPAILSIIDTM 326
L+ ++ PA + +I +
Sbjct: 283 LLTALMLPAAVRMIKVL 299
>gi|147677788|ref|YP_001212003.1| flp pilus assembly protein TadC [Pelotomaculum thermopropionicum
SI]
gi|146273885|dbj|BAF59634.1| flp pilus assembly protein TadC [Pelotomaculum thermopropionicum
SI]
Length = 307
Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 56/174 (32%), Positives = 93/174 (53%), Gaps = 7/174 (4%)
Query: 153 VILIGYVGFC----APSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVA 208
+IL+G G P + ++ + R+ I+++ PD +DLL + VE+G+S D AL +V
Sbjct: 131 IILLGTAGLALGWFVPELLLNKKILDRKKEIEKSLPDVMDLLTVSVEAGLSFDGALMKVT 190
Query: 209 EDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSI 268
E G LSEE + E+ R A + R +D + A+I +D+ G SI
Sbjct: 191 EKKRGV---LSEEFTKMLQEIKIGRPRLEALRDLSRRLDVDDLSAFAGAVILADQLGISI 247
Query: 269 GDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
G+ LRV + R +R AE+ A K+ +PM++F P + +V++GPA++ I
Sbjct: 248 GNILRVQSDQIRMKRRQAAEEMAMKAPVKMLIPMVLFIFPAIFVVLLGPAVIQI 301
>gi|323493498|ref|ZP_08098620.1| Flp pilus assembly protein TadC [Vibrio brasiliensis LMG 20546]
gi|323312321|gb|EGA65463.1| Flp pilus assembly protein TadC [Vibrio brasiliensis LMG 20546]
Length = 284
Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 61/226 (26%), Positives = 116/226 (51%), Gaps = 6/226 (2%)
Query: 101 KLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVG 160
KL G+ S + +I + +RLV + G+ W F L+ + AV +I +
Sbjct: 62 KLTMLGYHSPQAESIFMTLRLVS---MVCGGVAWFFYQQLSLDATGIAEIIAVAVITGIA 118
Query: 161 FCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSE 220
W V+ I + PDALDL+++CV SG S++ V E++ S LS
Sbjct: 119 IDRAVDW---RVKAVIHDIAKNIPDALDLMVVCVSSGQSLETTFNTVGEEMKTISQSLSR 175
Query: 221 EMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETR 280
E L T E++ L + Q A N R ++ V N + Q+ ++GT + ++L+++ S+ R
Sbjct: 176 EWLQTANEIAVLDSPQKALFNLDERLKLPEVNNMIVTMAQALKFGTPMAEALKLIASDNR 235
Query: 281 SERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
+++E E+ + K++ P+++F + ++++I+ P +LS+ T+
Sbjct: 236 QYQMLELEEWVGKIPAKMSFPLVVFIMMPVVVIIVAPMVLSLFQTI 281
>gi|261251593|ref|ZP_05944167.1| type II/IV secretion system protein TadC associated with Flp pilus
assembly [Vibrio orientalis CIP 102891]
gi|260938466|gb|EEX94454.1| type II/IV secretion system protein TadC associated with Flp pilus
assembly [Vibrio orientalis CIP 102891]
Length = 284
Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 60/229 (26%), Positives = 115/229 (50%), Gaps = 10/229 (4%)
Query: 100 NKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYV 159
KL G+ S + +I + R I G++W Y + L V++ +
Sbjct: 61 QKLAMFGYVSSQAESIFMTARASA---MTIAGVVWF--YSQQLSVDVGGFAQCVVVALSI 115
Query: 160 GFCAPSV--WISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVP 217
G W N+V++ I + PDALDL+++CV SG S++ V +++ S
Sbjct: 116 GIVIDRALDWRVNVVRQE---IAKNIPDALDLMVVCVSSGQSLEATFNTVGQEMKSISPS 172
Query: 218 LSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVS 277
LS E L+T E++ L + QVA N R + V N + Q+ ++GT + D+L+++ S
Sbjct: 173 LSREWLVTATEMAVLDSPQVALTNLDTRLALPEVNNMIVTMSQALKFGTPMADALKLIAS 232
Query: 278 ETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
+ R ++E E+ + K++ P+++ + ++++I+ P +LS+ T+
Sbjct: 233 DNRQYHMLELEEWVGKIPAKMSFPLVVLIMLPVVVIIVAPMVLSLFQTL 281
>gi|170725110|ref|YP_001759136.1| type II secretion system protein [Shewanella woodyi ATCC 51908]
gi|169810457|gb|ACA85041.1| type II secretion system protein [Shewanella woodyi ATCC 51908]
Length = 287
Score = 92.8 bits (229), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 90/165 (54%), Gaps = 2/165 (1%)
Query: 153 VILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIG 212
+IL G G+ P + +++L +KRQ+ I ++ P LD L + +E+G+++ A+ + E
Sbjct: 116 LILAGLFGYILPVITLNDLRKKRQALIVKSLPVYLDYLTMSIEAGLNMTGAISQAVER-- 173
Query: 213 GQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSL 272
G S PL E I ++ +R +F N R Q+ + + AL Q+++ G S+G +L
Sbjct: 174 GPSGPLRIEFEKVIRDMRAGMSRAQSFRNMAERVQITEINSLVSALAQAEKTGASLGQTL 233
Query: 273 RVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGP 317
RV + R ER AEKKA KL P+I+F PV +++ P
Sbjct: 234 RVQSDQRRIERFQRAEKKALEAPVKLVFPLIVFIFPVTFMILAFP 278
>gi|170692559|ref|ZP_02883721.1| type II secretion system protein [Burkholderia graminis C4D1M]
gi|170142215|gb|EDT10381.1| type II secretion system protein [Burkholderia graminis C4D1M]
Length = 318
Score = 92.8 bits (229), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 63/163 (38%), Positives = 98/163 (60%)
Query: 160 GFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLS 219
G+ P+ ++ +RQ I ++PDALDLL +CVE+G+ +D AL RVA+++ S ++
Sbjct: 146 GYYVPNAVLARCRARRQRRIVESFPDALDLLTVCVEAGLGMDAALMRVADEMTLASPEVA 205
Query: 220 EEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSET 279
E+ L + EL ++ A NF RT + + L+Q++R+GTSIG SLRV+
Sbjct: 206 NELQLMLLELRSGFTKEKALRNFALRTGAEDIDTFASMLVQAERFGTSIGASLRVMSDTL 265
Query: 280 RSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
R+ R M AE++AA + KL P+I P L+ V+IGPA + I
Sbjct: 266 RTRRRMRAEERAAKIALKLLFPLIFCIFPALMTVLIGPAFIHI 308
>gi|296158517|ref|ZP_06841347.1| Type II secretion system F domain protein [Burkholderia sp. Ch1-1]
gi|295891085|gb|EFG70873.1| Type II secretion system F domain protein [Burkholderia sp. Ch1-1]
Length = 293
Score = 92.8 bits (229), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 90/172 (52%), Gaps = 2/172 (1%)
Query: 153 VILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIG 212
+IL+ +G+ P +W ++ ++R I R P LD L + VE+G++I+ A+++ E
Sbjct: 120 LILVAALGYIYPRIWTRDVRRRRVGQILRHLPIYLDFLTLAVEAGLNINGAIQKSVEK-- 177
Query: 213 GQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSL 272
G PL E+ + +L NR A +R ++ V N ++Q++R G+ + SL
Sbjct: 178 GPEGPLRRELEHVLRDLKSGLNRTEALRRLDDRLRIKEVTNLVGTVVQAERMGSGLAKSL 237
Query: 273 RVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIID 324
R + RSER AEK+A KL P+++F P+ +V+ P ++ +
Sbjct: 238 RFQSEQRRSERFQRAEKQAMEAPVKLVFPLLMFIFPITFIVLGFPIVMKFVQ 289
>gi|148655544|ref|YP_001275749.1| type II secretion system protein [Roseiflexus sp. RS-1]
gi|148567654|gb|ABQ89799.1| type II secretion system protein [Roseiflexus sp. RS-1]
Length = 299
Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 57/187 (30%), Positives = 96/187 (51%), Gaps = 5/187 (2%)
Query: 144 YPFQLRVGAVILI--GYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISID 201
+ L +GA++L+ GF P +W+ V++RQ +I A PD LD+L +CV +G+ D
Sbjct: 111 FALGLPLGAILLVILPLGGFFYPLLWLRGRVKQRQHAITVALPDLLDMLAVCVSAGMGFD 170
Query: 202 QALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQS 261
AL + E G PL EEM + EL R+ AF N R D +R AL+Q+
Sbjct: 171 IALTLLVERGEG---PLYEEMGRMLHELQMGAPREQAFRNLAARNSSDALRGFIDALLQA 227
Query: 262 DRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILS 321
+ G+ I +L + R+ R A ++ A K+T+ +++ P ++ +II +S
Sbjct: 228 EELGSPIATTLERQAEDIRTGRRYRAREEGAKAATKITLIVVVLVTPSVLCLIIAALGMS 287
Query: 322 IIDTMKD 328
I+ + +
Sbjct: 288 IMRSTRG 294
>gi|220922536|ref|YP_002497838.1| type II secretion system protein [Methylobacterium nodulans ORS
2060]
gi|219947143|gb|ACL57535.1| type II secretion system protein [Methylobacterium nodulans ORS
2060]
Length = 303
Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 75/272 (27%), Positives = 135/272 (49%), Gaps = 11/272 (4%)
Query: 58 QQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAIL-VDENIVNKLR----AAGFRSEYS 112
Q+ T Q+ A+ R R+ +K L+AI V+E+ + + R GF + +
Sbjct: 31 QRGTVRQRMRAARRTSEREHTPYLPAERKGRLEAIFGVNESTIQRQRLDLLRGGFFNPNA 90
Query: 113 LNILLVVRLVVPIIFLILGI-IWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNL 171
+ +L + I ++ F D F L G+++L Y+ P ++S
Sbjct: 91 VEYFNFTKLTLVFALPICACAMFAFRSDLSSLTKFALVSGSLLLAYYI----PDAFVSRR 146
Query: 172 VQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSF 231
+ ++ + + A+PD LDLL++CV++G+S++ A RV ++ +S L + + +EL
Sbjct: 147 QRLQKEAYRSAFPDMLDLLVVCVDAGLSLEAAFDRVGSEMD-ESGALRVNLAIMASELRN 205
Query: 232 LPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKA 291
+ R +D R+ L QS GT I SLRV E R++R+M AE+KA
Sbjct: 206 GRGFVDGLQGLAERLDIDEARSFAILLQQSLELGTDISQSLRVYSDEMRNKRMMRAEEKA 265
Query: 292 ASLGPKLTVPMIIFFLPVLILVIIGPAILSII 323
+L K+ +P+ F PV+++V++ P ++ II
Sbjct: 266 NALPVKIVLPLGAFIFPVILIVVMVPIVIRII 297
>gi|319941897|ref|ZP_08016218.1| hypothetical protein HMPREF9464_01437 [Sutterella wadsworthensis
3_1_45B]
gi|319804550|gb|EFW01420.1| hypothetical protein HMPREF9464_01437 [Sutterella wadsworthensis
3_1_45B]
Length = 297
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 71/259 (27%), Positives = 138/259 (53%), Gaps = 12/259 (4%)
Query: 52 REILRKQQITSLQKDSASSRLRTRDSKSL--RNFVKKLNLKAILVDENIVNKLRAAGFRS 109
R +L +Q++ ++ S +R D +L R + +L A+ ++ AGF
Sbjct: 29 RSLLVEQRLNQIKGSGDSRLVRWEDLLTLIARPLRRSRDLAAV------ERSMQQAGFIK 82
Query: 110 EYSLNILLVVRLVVPIIFLILGIIWI-FGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWI 168
+ ++ L+ R +V I + G + I L++ P L A + + +V AP ++
Sbjct: 83 PWQTDLFLLFRALVLIAAAVGGWLAIDIDPTHLVQKP--LPPLAYLFLLFVAGRAPGWFL 140
Query: 169 SNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAE 228
S L ++RQ+ I+ P A+DLL IC+ G+S+++A RVA +I ++ +++E +T E
Sbjct: 141 SELAERRQNRIRLFIPKAVDLLTICMSCGMSLEEAFDRVASEIARRAPEVAKEFRMTRYE 200
Query: 229 LSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAE 288
+ + NR VA + R+ + ++ +L+QS +YGT + ++L+ + +E R+ +L E E
Sbjct: 201 M-LVVNRTVALKRLEARSGVREMKILANSLLQSIQYGTPLTEALQSIAAEARAGQLSELE 259
Query: 289 KKAASLGPKLTVPMIIFFL 307
+KA + + VP+I+ L
Sbjct: 260 QKAGRISAVIGVPLIVLVL 278
>gi|91777214|ref|YP_552422.1| putative type II secretion system protein F [Burkholderia
xenovorans LB400]
gi|91689874|gb|ABE33072.1| Putative type II secretion system protein F [Burkholderia
xenovorans LB400]
Length = 293
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 89/172 (51%), Gaps = 2/172 (1%)
Query: 153 VILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIG 212
+IL+ +G+ P +W ++ ++R + I R P LD L + VE+G++I+ A+++ E
Sbjct: 120 LILVAALGYFYPRIWTRDVRRRRVAQILRHLPIYLDFLTLAVEAGLNINGAIQKAVEK-- 177
Query: 213 GQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSL 272
G PL E+ + +L NR A +R ++ V N ++Q++R G+ + SL
Sbjct: 178 GPEGPLRRELEHVLRDLKSGLNRTEALRRLDDRLRIKEVTNLVGTVVQAERMGSGLAKSL 237
Query: 273 RVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIID 324
R + RSER AEK+A KL P++ F P+ +V+ P + +
Sbjct: 238 RFQSEQRRSERFQRAEKQAMEAPVKLVFPLLFFIFPITFIVLGFPIAMKFVQ 289
>gi|312883759|ref|ZP_07743478.1| Flp pilus assembly protein TadC [Vibrio caribbenthicus ATCC
BAA-2122]
gi|309368508|gb|EFP96041.1| Flp pilus assembly protein TadC [Vibrio caribbenthicus ATCC
BAA-2122]
Length = 284
Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 93/160 (58%), Gaps = 3/160 (1%)
Query: 167 WISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTI 226
W N+V++ I + PDALDL+++CV SG +++ V +++ S LS E L+T
Sbjct: 125 WRVNVVRQE---IAKHIPDALDLMVVCVSSGQNLEATFNTVGQEMKSISPSLSREWLVTS 181
Query: 227 AELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLME 286
E++ L + QVA N R + + N + Q+ ++G + ++L+++ S++R ++E
Sbjct: 182 TEMAVLDSPQVALTNLDARLALPEINNMIATMSQALKFGAPMAEALKLIASDSRQYHMLE 241
Query: 287 AEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
E+ + K++ P+++F + ++++I+ P +LSI T+
Sbjct: 242 LEEWVGKIPAKMSFPLVVFIMLPVVVIIVAPMVLSIFQTI 281
>gi|218677458|ref|ZP_03525355.1| putative component of pilus protein [Rhizobium etli CIAT 894]
Length = 136
Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 42/105 (40%), Positives = 71/105 (67%), Gaps = 2/105 (1%)
Query: 16 VAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSR--LR 73
+A+ A+++F+ Y + +P G+L KRMK+V+ ERE +R ++ + + + + LR
Sbjct: 16 IALLVAIAVFATFYTIAVPFFERGDLSKRMKAVSTEREQIRARERARMNTEPGAGKASLR 75
Query: 74 TRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLV 118
+++++S+R V++ NL+ LVD+N VNKLRAAG RSE +LN LV
Sbjct: 76 SQNNRSVRQIVERFNLRKALVDDNTVNKLRAAGLRSENALNTFLV 120
>gi|127511576|ref|YP_001092773.1| type II secretion system protein [Shewanella loihica PV-4]
gi|126636871|gb|ABO22514.1| type II secretion system protein [Shewanella loihica PV-4]
Length = 287
Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 89/165 (53%), Gaps = 2/165 (1%)
Query: 153 VILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIG 212
++L G+ P + +++L +KRQ I ++ P LD L + +E+G+++ AL + E
Sbjct: 116 LLLAAVFGYFLPVMTLNDLRKKRQGLIVKSLPVYLDYLTMSIEAGLNMTGALSQAVER-- 173
Query: 213 GQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSL 272
G + PL E I ++ +R AF N +R Q+ V + AL Q++R G S+G +L
Sbjct: 174 GPAGPLRIEFEKVIRDMRAGMSRAQAFRNMADRVQVTEVNSLVSALAQAERTGASLGQTL 233
Query: 273 RVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGP 317
R+ + R ER AEKKA KL P+I+F PV +++ P
Sbjct: 234 RIQSDQRRIERFQRAEKKALEAPVKLVFPLIVFIFPVTFMILAFP 278
>gi|116626772|ref|YP_828928.1| type II secretion system protein [Candidatus Solibacter usitatus
Ellin6076]
gi|116229934|gb|ABJ88643.1| type II secretion system protein [Candidatus Solibacter usitatus
Ellin6076]
Length = 312
Score = 90.1 bits (222), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 98/169 (57%)
Query: 159 VGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPL 218
+GF P + LV+ ++ ++ A PD +DLL I + +G+ +DQA+ RV+E++ L
Sbjct: 138 LGFILPKQILYRLVKSYRTKLQDALPDTVDLLGIVLGTGLGLDQAMMRVSEEMQFIYPEL 197
Query: 219 SEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSE 278
+ E + ++ +R +F F RT ++ +++ + +IQS+++GTS+ +L+V
Sbjct: 198 ANEFATVVMQVRAGQDRGKSFNQFVRRTGIEDIKSLSAMIIQSEKFGTSLAQALKVYADA 257
Query: 279 TRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
R+ R + AE G K+ P+++F LPVL ++ + P +LS++ +K
Sbjct: 258 LRTRRRLRAEAAVGKAGIKMLFPIVVFILPVLFVITLVPGMLSVMKDLK 306
>gi|269926132|ref|YP_003322755.1| von Willebrand factor type A; type II secretion system protein
[Thermobaculum terrenum ATCC BAA-798]
gi|269789792|gb|ACZ41933.1| von Willebrand factor type A; type II secretion system protein
[Thermobaculum terrenum ATCC BAA-798]
Length = 643
Score = 90.1 bits (222), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 90/169 (53%), Gaps = 3/169 (1%)
Query: 160 GFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLS 219
G P W+S + +R+ I PDALDLL I VE+G+ D A+ + + ++
Sbjct: 475 GVYLPLFWLSREITQRRRRILLQMPDALDLLTISVEAGLGFDAAMLEIVQKWDND---IA 531
Query: 220 EEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSET 279
E L ++E+ +R+ A + R Q+D ++ +++Q+D G SIG +L + +
Sbjct: 532 REFALVLSEMKLGKSRRDALRSMAERVQLDEMKLLVSSIVQADEIGASIGRTLSIQSEQM 591
Query: 280 RSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMKD 328
R R AE+ K+ +PM++F P + +V++GPAI +I++ + +
Sbjct: 592 RLRRRQRAEELGHKAVIKIIIPMVLFIFPAVFVVLLGPAIPTILNALGN 640
>gi|116671473|ref|YP_832406.1| type II secretion system protein [Arthrobacter sp. FB24]
gi|116611582|gb|ABK04306.1| type II secretion system protein [Arthrobacter sp. FB24]
Length = 292
Score = 89.7 bits (221), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 65/221 (29%), Positives = 119/221 (53%), Gaps = 9/221 (4%)
Query: 105 AGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAP 164
AG S L LLV + P + L++ ++ + + Q+ + AV G F P
Sbjct: 79 AGRPSSMPLPRLLVAK---PALALVVAVLMMLMLSR--NGSAQMILLAVFATGLAYFV-P 132
Query: 165 SVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLL 224
+ I + Q+RQ I+ P+ LD +LI VE+G+ + A+ R ++ G PL+EE++
Sbjct: 133 DLLIYSRGQERQKKIQLELPNTLDQMLIAVEAGLGFESAMARAGQNGKG---PLAEELIR 189
Query: 225 TIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERL 284
T+ ++ +R+ ++ R+ + +R +A++Q+D YG +I L+ E R +R
Sbjct: 190 TLQDMQVGRSRRDSYLALAERSNVQDLRTFVRAVVQADTYGIAIAKVLKAQAKEMRVKRR 249
Query: 285 MEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDT 325
AE+KA L + P+++F PV+ +VI+GPA+++II+
Sbjct: 250 QRAEQKAMKLPVLVLFPLLLFIFPVIFIVILGPAVINIIEA 290
>gi|227819312|ref|YP_002823283.1| TadC pilus assembly protein [Sinorhizobium fredii NGR234]
gi|227338311|gb|ACP22530.1| TadC pilus assembly protein [Sinorhizobium fredii NGR234]
Length = 313
Score = 89.7 bits (221), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 58/227 (25%), Positives = 119/227 (52%), Gaps = 8/227 (3%)
Query: 100 NKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYV 159
N+L AG+ S ++ +R +V I ++L +W F ++ L P R+ +++ +V
Sbjct: 82 NRLIRAGYFSANAVTTFHAIRAIVCIGMMVL-TVWAF--NRFL--PETSRLMTLVIAMFV 136
Query: 160 G---FCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSV 216
F +++I ++ +R +PD +D+L++C+++G+S++ A RVA + +
Sbjct: 137 AGMTFILVNIYIDRRGSAKEREYRRLFPDFMDMLIVCLDAGMSLEAAANRVAREFVSKRK 196
Query: 217 PLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLV 276
+ + + E+ + A N R ++D R+ QS+ GTS+ +LRV
Sbjct: 197 DFGLHLSIMMLEVRGGRRLREALANLATRLRIDEARSLAVLFRQSEELGTSVTQTLRVYS 256
Query: 277 SETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSII 323
E R R++ AE+KA SL K+ +P+ F PV +++++ P ++ ++
Sbjct: 257 KEMRDLRIVRAEEKANSLPIKMLLPLGAFLFPVSLVIVLVPIVIRVV 303
>gi|116671481|ref|YP_832414.1| type II secretion system protein [Arthrobacter sp. FB24]
gi|116611590|gb|ABK04314.1| type II secretion system protein [Arthrobacter sp. FB24]
Length = 294
Score = 89.4 bits (220), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 93/169 (55%), Gaps = 3/169 (1%)
Query: 161 FCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSE 220
+ P + + + +RQ +++ + LD +LI VE+G+ + A+ R E+ G PL+E
Sbjct: 129 YFIPDLLLYSKGMERQKAMQLELANTLDQMLISVEAGLGFEGAMARAGENGKG---PLAE 185
Query: 221 EMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETR 280
E++ T+ ++ +R+ ++ RT + +R+ QA++Q+D YG +I LR+ R
Sbjct: 186 EIIRTLQDMQVGRSRRESYLALAERTNIPELRSFVQAIVQADTYGIAISRVLRIQAKVMR 245
Query: 281 SERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMKDH 329
+R AE+KA L + P++ F PVL + I+GPA+++ + T
Sbjct: 246 VKRRQRAEEKAMKLPVMILFPLLFFIFPVLFIAILGPAVINTVVTFSGQ 294
>gi|323702118|ref|ZP_08113786.1| Type II secretion system F domain [Desulfotomaculum nigrificans DSM
574]
gi|323533000|gb|EGB22871.1| Type II secretion system F domain [Desulfotomaculum nigrificans DSM
574]
Length = 310
Score = 89.0 bits (219), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 52/170 (30%), Positives = 97/170 (57%), Gaps = 3/170 (1%)
Query: 159 VGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPL 218
+G+ +P ++++ +++R++ +++A PDALDLL + VE+G+ D AL +VAE SV L
Sbjct: 144 LGWLSPDLFLNARIRQRKNQVEKALPDALDLLTVSVEAGLGFDCALMKVAEQ--SNSV-L 200
Query: 219 SEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSE 278
++E +L + E R+ A + +R +D + ++I +D G SIG+ LR +
Sbjct: 201 ADEFVLMMQECHMGKPRREALRDMADRVDVDDLSTFCGSIILADTLGISIGNILRTQSQQ 260
Query: 279 TRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMKD 328
R +R E+ A K+ PM++F P + ++++GPA L I+ +
Sbjct: 261 IRQKRRQRTEELAMKAPIKMLFPMVLFIFPAIFVILLGPAALQIMQAFNN 310
>gi|119773848|ref|YP_926588.1| putative type II secretion system protein F [Shewanella amazonensis
SB2B]
gi|119766348|gb|ABL98918.1| putative type II secretion system protein F [Shewanella amazonensis
SB2B]
Length = 287
Score = 89.0 bits (219), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 89/171 (52%), Gaps = 2/171 (1%)
Query: 147 QLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRR 206
+L ++L G+ P + +++L + RQ I + P LD L + +E+G+++ A+ +
Sbjct: 110 ELSANYLLLAAIAGYFLPMLTLNDLRRTRQEQIVKVLPVYLDYLTMAIEAGLNMSAAIAQ 169
Query: 207 VAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGT 266
E G PL E I ++ +R AF N +R Q+ + + AL Q++R G
Sbjct: 170 AVER--GPDGPLKIEFEKVIRDMRAGISRAQAFRNMADRVQISELNSLVSALAQAERTGA 227
Query: 267 SIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGP 317
S+G +LR+ + R ER AEKKA KL P+I+F PV L+++ P
Sbjct: 228 SLGYTLRIQADQRRVERFQRAEKKAMEAPIKLMFPLIMFIFPVTFLILLFP 278
>gi|317122043|ref|YP_004102046.1| type II secretion system F domain [Thermaerobacter marianensis DSM
12885]
gi|315592023|gb|ADU51319.1| Type II secretion system F domain [Thermaerobacter marianensis DSM
12885]
Length = 331
Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 47/145 (32%), Positives = 82/145 (56%), Gaps = 3/145 (2%)
Query: 184 PDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFY 243
PD +DLL + VE+G+ D A+++V+E P+S E + EL R+ A +
Sbjct: 190 PDVMDLLSVSVEAGLGFDGAIQKVSEKF---PAPVSTEFRQYLKELRLGVEREEALRSLA 246
Query: 244 NRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMI 303
+R ++ +R+ A+IQ+DR G S+ LRV + R +R AE++A K+ +P++
Sbjct: 247 DRCELPELRSFAAAVIQADRLGVSLARVLRVQAEQLRFQRKQRAEEQAMKTPIKMLLPLV 306
Query: 304 IFFLPVLILVIIGPAILSIIDTMKD 328
+F P L +V++GPA++ I+ D
Sbjct: 307 LFIFPTLFIVLLGPALIQILAAFND 331
>gi|332284566|ref|YP_004416477.1| hypothetical protein PT7_1313 [Pusillimonas sp. T7-7]
gi|330428519|gb|AEC19853.1| hypothetical protein PT7_1313 [Pusillimonas sp. T7-7]
Length = 291
Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 87/167 (52%), Gaps = 2/167 (1%)
Query: 157 GYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSV 216
G +G P W+ L ++RQ + R +P LD+ +CVE+G+++ AL++ A+ G
Sbjct: 123 GLIGMLWPRYWLHGLARQRQFQMLREFPFLLDMTTLCVEAGLNLHGALQQAAQH--GPDG 180
Query: 217 PLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLV 276
PL E+ +A++ R A + +R + V++ AL Q+D+ G S+G LR
Sbjct: 181 PLRGELRHALADMRAGVPRIQALQELADRCGLPAVQSLVTALAQADQLGMSLGPLLRSQS 240
Query: 277 SETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSII 323
+ R+ER + AEK A K+ PM+ P L+I P ++ ++
Sbjct: 241 EQRRAERFLRAEKLALEAPVKMLFPMVFCIFPCTFLIIGFPIVIKLL 287
>gi|325518827|gb|EGC98402.1| type II secretion system protein [Burkholderia sp. TJI49]
Length = 187
Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 60/170 (35%), Positives = 106/170 (62%)
Query: 153 VILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIG 212
++++ +G P+V ++ + RQ +I +PDALDLL +CVE+G+ +D AL +V++++
Sbjct: 5 LVVLAAIGNYVPNVMLARRIAARQRAIFEDFPDALDLLTVCVEAGLGLDAALMKVSDELH 64
Query: 213 GQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSL 272
+S ++ E+ L + E+ ++ A N RT ++ V + LIQ+DR+GTS+ +SL
Sbjct: 65 FRSAVVASELALLLLEMRSGFTKETALRNLALRTGVEDVESFCTMLIQADRFGTSVAESL 124
Query: 273 RVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
RVL R+ R M AE++AA + KL P+I P L+ V++GPA++ +
Sbjct: 125 RVLSDMLRTRRRMRAEERAAKIALKLLFPLIFCVFPALMGVLLGPALIHV 174
>gi|159901127|ref|YP_001547374.1| type II secretion system protein [Herpetosiphon aurantiacus ATCC
23779]
gi|159894166|gb|ABX07246.1| type II secretion system protein [Herpetosiphon aurantiacus ATCC
23779]
Length = 301
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 56/163 (34%), Positives = 91/163 (55%), Gaps = 3/163 (1%)
Query: 157 GYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSV 216
G +GF P++W+ ++KRQ I +A PDALDLL I V +G+ D AL+RVAE +
Sbjct: 134 GALGFLLPAMWLGRQIKKRQKLILKALPDALDLLSISVTAGLGFDAALQRVAEKWDNE-- 191
Query: 217 PLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLV 276
L E ++++ R AF + RT ++ + + A+IQ+D+ G S+G L++
Sbjct: 192 -LCREFRRALSDIRLGTQRHEAFRSMTVRTGVEDLTSFVSAVIQADQLGVSMGKMLKIQS 250
Query: 277 SETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAI 319
+ R R AE++A K+ P++ P + +VI+GPAI
Sbjct: 251 DQLRLRRRQRAEEEAQKAPIKMLFPLVFLIFPSMFVVILGPAI 293
>gi|90406745|ref|ZP_01214938.1| Flp pilus assembly protein TadC [Psychromonas sp. CNPT3]
gi|90312198|gb|EAS40290.1| Flp pilus assembly protein TadC [Psychromonas sp. CNPT3]
Length = 288
Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 65/240 (27%), Positives = 128/240 (53%), Gaps = 6/240 (2%)
Query: 89 LKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQL 148
L + V++ + +L AGF ++ N L RL ++F++L GY L
Sbjct: 54 LPTLKVNKKLNIQLLRAGFNND---NASLYFRLF-KLVFMLLCFGAYLGYKHFSLTSLVL 109
Query: 149 RVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVA 208
A++ + C W+ ++ S+I A PDALDL++ICVESG++++ RV
Sbjct: 110 AEAAIVAMISGMVCER--WLIARAKRITSNIALATPDALDLMVICVESGLTLEAMFGRVG 167
Query: 209 EDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSI 268
+++ LS + L+T EL L R A +N NR + + N +L Q+++YG SI
Sbjct: 168 QEMYQICPELSRQWLITEVELRLLEPRSRALKNLANRCAVVEIENLVISLSQAEKYGGSI 227
Query: 269 GDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMKD 328
+LR++ +++R ++ + E+K + K+ +P+++ + ++++I+ P +S++ T+ +
Sbjct: 228 AQTLRLIATDSRQKQYLSLEEKVGKIPAKMALPLVLLVMLPVVVLIVAPTFISLLSTLGE 287
>gi|86360589|ref|YP_472477.1| putative tadC pilus assembly protein [Rhizobium etli CFN 42]
gi|86284691|gb|ABC93750.1| putative tadC pilus assembly protein [Rhizobium etli CFN 42]
Length = 314
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/227 (25%), Positives = 119/227 (52%), Gaps = 8/227 (3%)
Query: 100 NKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYV 159
N+L AG+ + ++ VVR V+ I L+ +W +++ P ++ A+I+ +
Sbjct: 83 NRLIRAGYFAAGAVTTFQVVRAVICIGMLV-AAVW--AVNRI--APAMSQMAALIIAMFA 137
Query: 160 G---FCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSV 216
F +++I ++ +R +PD +D+L++C+++G+SI+ A RVA + +
Sbjct: 138 AGATFILVNIYIDRRGAAKEREYRRLFPDFMDMLIVCLDAGMSIEAAANRVAREFVDKQQ 197
Query: 217 PLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLV 276
+ + + E+ + A N R ++D R + QS+ GTS+ +LRV
Sbjct: 198 DFGLHLSIMMLEVRGGRRLREALANLATRLRIDEARALSVLFRQSEELGTSVTQTLRVYS 257
Query: 277 SETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSII 323
+E R R++ AE+KA +L K+ +P+ F PV +L+++ P I+ ++
Sbjct: 258 NEMRDLRVVRAEEKANALPVKMLLPLGAFLFPVSLLIVLVPIIMRVV 304
>gi|319782178|ref|YP_004141654.1| type II secretion system F domain [Mesorhizobium ciceri biovar
biserrulae WSM1271]
gi|317168066|gb|ADV11604.1| Type II secretion system F domain [Mesorhizobium ciceri biovar
biserrulae WSM1271]
Length = 316
Score = 87.4 bits (215), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 57/237 (24%), Positives = 120/237 (50%), Gaps = 3/237 (1%)
Query: 89 LKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGY-DKLL--EYP 145
K+I + N L A FR+ + + ++ + ++ + LG + ++ ++L P
Sbjct: 75 FKSIEKEREEPNALEAKLFRAGFYQSTAPLIYTLSRLVAVCLGFLAMYALLSRVLPPHLP 134
Query: 146 FQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALR 205
+ + L G PS+ + ++ +RA+PD +D+++ C ++G+S++ A+
Sbjct: 135 GFITLAGSALFGLACMVIPSILLDRFENSQKQIYRRAFPDFMDMMITCADAGMSLEGAVE 194
Query: 206 RVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYG 265
RV+ ++ L ++ + +L + A +R +D R QS+ G
Sbjct: 195 RVSHEMAATHKWLGIQLSIMNLQLRAGKPLREALRELADRIGLDEARALAVLFRQSEELG 254
Query: 266 TSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
TS+ D+LRV +E R +R++ AE++A SL K+ +P+ + PV+++VI+ P I+ +
Sbjct: 255 TSLTDALRVYSAEMRGQRILSAEERANSLPVKMMIPLGLCIFPVVMMVIMLPVIIRM 311
>gi|187251609|ref|YP_001876091.1| TadC subunit [Elusimicrobium minutum Pei191]
gi|186971769|gb|ACC98754.1| TadC subunit [Elusimicrobium minutum Pei191]
Length = 296
Score = 87.0 bits (214), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 52/167 (31%), Positives = 88/167 (52%), Gaps = 1/167 (0%)
Query: 159 VGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPL 218
+GF P+ +++ +QKRQ + + +DL + +ESG+ A R+ I + L
Sbjct: 126 LGFYIPTALVNSKIQKRQRDMLGNFSTTVDLAALIIESGLDYMTAFDRIIR-IAKEKTVL 184
Query: 219 SEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSE 278
EE+ + E+ +R+ A E NRT + +R+ +IQSD GTS+ D LR +
Sbjct: 185 EEELDKMLNEVKLGYSRREALERLANRTGVQEIRSFVGLIIQSDELGTSLVDLLRNFSID 244
Query: 279 TRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDT 325
R R+ +AEK AA K+ VP+ +F P + ++I+ P + II +
Sbjct: 245 LRFRRMNKAEKLAAQASTKMLVPLFLFIFPTVFILILAPMLKDIISS 291
>gi|32471258|ref|NP_864251.1| integral membrane protein [Rhodopirellula baltica SH 1]
gi|32396960|emb|CAD71930.1| probable integral membrane protein [Rhodopirellula baltica SH 1]
Length = 313
Score = 87.0 bits (214), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 56/236 (23%), Positives = 117/236 (49%), Gaps = 13/236 (5%)
Query: 87 LNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPF 146
LNL++ L++ I + G + ++ + ++ LV PI+F G + G E P
Sbjct: 84 LNLESQLINAGIHHH----GMHRKLTM-LRWLLFLVPPIVF---GSLCYRG-----EMPL 130
Query: 147 QLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRR 206
V + + + + P +W+ V+K ++ A PD LDL+++C+++G+S+ +++++
Sbjct: 131 NWAVMSSSFLMLLAYSLPVMWLKRAVRKYHQMLRAALPDFLDLMVVCLDAGLSLQESIKQ 190
Query: 207 VAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGT 266
V E++ + E+ L ++ A F +R+ D +R + + + R+GT
Sbjct: 191 VGEELRWIHPAFTHEIDLVQHDIDLGSPVDKAIRRFADRSGYDALRTLSSLIREGQRFGT 250
Query: 267 SIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
++ +SL R +R AE+ A K+ +P ++F P + +V++ PA I
Sbjct: 251 NVSESLSGHADMLRFQREQAAEENAQKASVKIILPTMLFIFPAIFIVLVSPAAFKI 306
>gi|327539548|gb|EGF26158.1| Flp pilus assembly protein TadC [Rhodopirellula baltica WH47]
Length = 311
Score = 87.0 bits (214), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 56/236 (23%), Positives = 117/236 (49%), Gaps = 13/236 (5%)
Query: 87 LNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPF 146
LNL++ L++ I + G + ++ + ++ LV PI+F G + G E P
Sbjct: 82 LNLESQLINAGIHHH----GMHRKLTM-LRWLLFLVPPIVF---GSLCYRG-----EMPL 128
Query: 147 QLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRR 206
V + + + + P +W+ V+K ++ A PD LDL+++C+++G+S+ +++++
Sbjct: 129 NWAVMSSSFLMLLAYSLPVMWLKRAVRKYHQMLRAALPDFLDLMVVCLDAGLSLQESIKQ 188
Query: 207 VAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGT 266
V E++ + E+ L ++ A F +R+ D +R + + + R+GT
Sbjct: 189 VGEELRWIHPAFTHEIDLVQHDIDLGSPVDKAIRRFADRSGYDALRTLSSLIREGQRFGT 248
Query: 267 SIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
++ +SL R +R AE+ A K+ +P ++F P + +V++ PA I
Sbjct: 249 NVSESLSGHADMLRFQREQAAEENAQKASVKIILPTMLFIFPAIFIVLVSPAAFKI 304
>gi|145299824|ref|YP_001142665.1| flp pilus assembly protein FlpH [Aeromonas salmonicida subsp.
salmonicida A449]
gi|88866591|gb|ABD57359.1| FlpH [Aeromonas salmonicida subsp. salmonicida A449]
gi|142852596|gb|ABO90917.1| flp pilus assembly protein FlpH [Aeromonas salmonicida subsp.
salmonicida A449]
Length = 294
Score = 86.7 bits (213), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 98/176 (55%), Gaps = 3/176 (1%)
Query: 154 ILIGYV-GFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIG 212
+L+ YV G P W+ +K +S+ ++ PDA+DLL+I VE+G+++D+AL RV +G
Sbjct: 120 VLVAYVVGAGVPERWLQWRARKVKSAQQKVVPDAIDLLVISVEAGLALDRALLRVGHYLG 179
Query: 213 GQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSL 272
L+ + L T AE+ ++ RT + + L + +YG+ + +++
Sbjct: 180 ALEPGLARQFLRTHAEIQMRGDQASCLARLAWRTGLPELDRLANTLQMAQQYGSPLAETM 239
Query: 273 RVLVSETRSERLMEAEKKAASLGPKLT-VPMIIFFLPVLILVIIGPAILSIIDTMK 327
R + E R R + E++A SL K+T + M + LP+L+L II P + +I++++
Sbjct: 240 RTISQEARQMRRLALEEQAGSLPGKITLIQMALIMLPMLVL-IIAPTLNLLINSLR 294
>gi|284048519|ref|YP_003398858.1| Type II secretion system F domain protein [Acidaminococcus
fermentans DSM 20731]
gi|283952740|gb|ADB47543.1| Type II secretion system F domain protein [Acidaminococcus
fermentans DSM 20731]
Length = 309
Score = 86.3 bits (212), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 57/205 (27%), Positives = 106/205 (51%), Gaps = 6/205 (2%)
Query: 126 IFLILGIIWIF-GYDKLLEYPFQLRVGAVILIGYVGFCA--PSVWISNLVQKRQSSIKRA 182
I+ + I W F G+ +P G V++ G + F A P ++++++ RQ+ I R
Sbjct: 108 IWFVSMIFWGFQGFRYTTGHPMSTFGGLVLIWGCLLFGAMLPFGVLNHIIRNRQTKIIRQ 167
Query: 183 WPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENF 242
PD LDLL I V++G+S+D A+R+V E + G PL +E + ++ R+ + +
Sbjct: 168 LPDVLDLLSISVQAGLSLDGAMRKVVERMEG---PLIDEFRRMLRDVRMGMTRRRSMQLM 224
Query: 243 YNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPM 302
R + V +++QS+R G S+ D+L + R R A +A K+ P+
Sbjct: 225 ARRCDVQDVYLFVMSVVQSERLGASMSDTLVIQADNMRDLRRQRARTQAMKAPVKMIFPL 284
Query: 303 IIFFLPVLILVIIGPAILSIIDTMK 327
+ P + +V++ P+++S++ MK
Sbjct: 285 VFCIFPAIFVVVLLPSLISLMQGMK 309
>gi|257791502|ref|YP_003182108.1| type II secretion system protein [Eggerthella lenta DSM 2243]
gi|257475399|gb|ACV55719.1| type II secretion system protein [Eggerthella lenta DSM 2243]
Length = 295
Score = 86.3 bits (212), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 66/236 (27%), Positives = 126/236 (53%), Gaps = 17/236 (7%)
Query: 95 DENIVNKLRAAGFRSE----YSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRV 150
+ N+ N++ AAG + Y L+++L + + +I L++ +I G D F V
Sbjct: 66 ERNLRNQIAAAGLNMKPSTFYGLSVILSL---LGMIALLVFSPYIVGSDTTSLLLFNAVV 122
Query: 151 GAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAED 210
A ++G GF + N +RQ +I R +DLL I VE+G+++++A+R V+E
Sbjct: 123 VAAGILGPRGFL---ILKRN---ERQEAINRELASVIDLLSISVEAGLTMERAMRHVSER 176
Query: 211 IGGQSVPLSEEMLLTIAELSFLP-NRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIG 269
+ G L +E+ L +++ L +R+ A +R Q + V ++I S + G+SI
Sbjct: 177 LDGT---LCKEIALCERDINLLGYSREDALRRLADRCQTEGVSMFVSSVIVSAKSGSSIS 233
Query: 270 DSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDT 325
L++ S R+ + E+K L K+ PM +F +P L+L+++ PA+L+++++
Sbjct: 234 RVLKMQASVARNRQFTALEEKVEKLPTKMIFPMSMFIMPSLMLIVMAPAVLTLVES 289
>gi|307726638|ref|YP_003909851.1| type II secretion system F domain-containing protein [Burkholderia
sp. CCGE1003]
gi|307587163|gb|ADN60560.1| Type II secretion system F domain protein [Burkholderia sp.
CCGE1003]
Length = 293
Score = 86.3 bits (212), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 90/175 (51%), Gaps = 6/175 (3%)
Query: 150 VGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAE 209
+GA +L G+ P +W ++ ++R + I + LD L + VE+G++I+ A+++ E
Sbjct: 121 LGAALL----GYFYPRIWTRDVRRRRVAQILKHLSIYLDFLTLAVEAGLNINGAIQKAVE 176
Query: 210 DIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIG 269
G + PL E+ + +L NR A +R ++ V N A++Q++R G +
Sbjct: 177 K--GPAGPLRWELEHVLRDLKSGLNRTEALRRLDDRLRIKEVTNFVGAVVQAERMGAGLA 234
Query: 270 DSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIID 324
SLR + RSER AEKKA KL P+++F P+ +V+ P + +
Sbjct: 235 KSLRFQSEQRRSERFQRAEKKAMEAPVKLVFPLLVFIFPITFIVLGFPIAMKFVQ 289
>gi|323341960|ref|ZP_08082193.1| flp pilus assembly protein TadC [Erysipelothrix rhusiopathiae ATCC
19414]
gi|322464385|gb|EFY09578.1| flp pilus assembly protein TadC [Erysipelothrix rhusiopathiae ATCC
19414]
Length = 306
Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 46/143 (32%), Positives = 81/143 (56%), Gaps = 3/143 (2%)
Query: 184 PDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFY 243
P+ +D+L + V +G+S DQAL V G PL EE + E+ R+ A
Sbjct: 164 PEVMDILSVSVVAGLSFDQALGHVTTKAEG---PLIEEFRICQREIMLGKPRKEALNRLS 220
Query: 244 NRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMI 303
RT+++ V++ T A+IQ+D G S+ + L R+ + E++AA + K+ +PM+
Sbjct: 221 ERTEIEEVKSFTNAIIQADELGISLQNVLMSQSQMIRTSHRQDVEERAAKIPVKILIPMV 280
Query: 304 IFFLPVLILVIIGPAILSIIDTM 326
+F PV+ ++++GPA+ +IID +
Sbjct: 281 LFIFPVIFIILLGPAVPTIIDAL 303
>gi|117617658|ref|YP_855996.1| Flp pilus assembly protein TadC [Aeromonas hydrophila subsp.
hydrophila ATCC 7966]
gi|117559065|gb|ABK36013.1| Flp pilus assembly protein TadC [Aeromonas hydrophila subsp.
hydrophila ATCC 7966]
Length = 294
Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 98/176 (55%), Gaps = 3/176 (1%)
Query: 154 ILIGYV-GFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIG 212
+L+ YV G P W+ +K +++ ++ PDA+DLL+I VE+G+++D+AL RV +G
Sbjct: 120 VLVAYVVGAGVPERWLQWRARKVKAAQQKVVPDAIDLLVISVEAGLALDRALLRVGHYLG 179
Query: 213 GQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSL 272
L+ + L T AE+ ++ RT + + L + +YG+ + +++
Sbjct: 180 ALEPGLARQFLRTHAEIQMRGDQAGCLARLAWRTGLPELDRLANTLQMAQQYGSPLAETM 239
Query: 273 RVLVSETRSERLMEAEKKAASLGPKLT-VPMIIFFLPVLILVIIGPAILSIIDTMK 327
R + E R R + E++A SL K+T + M + LP+L+L II P + +I++++
Sbjct: 240 RTISQEARQMRRLALEEQAGSLPGKITLIQMALIMLPMLVL-IIAPTLNLLINSLR 294
>gi|84385699|ref|ZP_00988730.1| putative TadC [Vibrio splendidus 12B01]
gi|84379679|gb|EAP96531.1| putative TadC [Vibrio splendidus 12B01]
Length = 290
Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 65/254 (25%), Positives = 131/254 (51%), Gaps = 13/254 (5%)
Query: 74 TRDSKSLRN----FVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLI 129
T++ SL++ F KL V N++ AG +E+ + +++ +VP+IF I
Sbjct: 45 TQEKVSLKDKFLVFTSKLAFNRDEVKANLIK----AGIHNEFFSQVYYLIK-IVPMIFCI 99
Query: 130 LGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDL 189
+ I +++ +L + VG +LI + AP ++I++ + S I P LDL
Sbjct: 100 VTIGYMYLNSRLDMLNSFMSVGISLLIFLI---APDMYIASRGKSNISHISSRLPFLLDL 156
Query: 190 LLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMD 249
+ +CV +G++++ +L ++ ++ L+ ++ T +E + + A FY+
Sbjct: 157 MNVCVHTGMTLEASLEYLSNELKMVDENLAF-VVQTTSERAKVVGLDKALSEFYDLVPTT 215
Query: 250 CVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPV 309
++ L QS +YG+S+G L L S+ R ++E E+K +G K++VPMI F +
Sbjct: 216 EAQSFVMTLTQSLKYGSSVGAVLASLASDIREINMLELEEKIGKMGAKMSVPMIAFIMIP 275
Query: 310 LILVIIGPAILSII 323
++++I P I+ ++
Sbjct: 276 IVILIAAPGIMRML 289
>gi|197335643|ref|YP_002155274.1| bipartite nuclear localization signal containing protein [Vibrio
fischeri MJ11]
gi|197317133|gb|ACH66580.1| bipartite nuclear localization signal containing protein [Vibrio
fischeri MJ11]
Length = 290
Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 60/235 (25%), Positives = 125/235 (53%), Gaps = 17/235 (7%)
Query: 95 DENIVNKLRAAGF-RSEYSLNILLVVRLVVPIIF--LILGIIWIFG---YDKLLEYPFQL 148
+E I KLR AG+ ++Y V L +PI + L++G + IFG Y L +
Sbjct: 64 EEEIKQKLRQAGWSNTQY-------VHLFMPIKYSVLLIGEV-IFGIAYYQSFLSSTAWV 115
Query: 149 RVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVA 208
++ ++ + AP +++ ++ R + P LDL+ +CV++G++++ +L +A
Sbjct: 116 ITASLWMVFVI--IAPDMYLQAKIKARIHRVSTQMPYLLDLMAVCVQTGMTVEASLSYLA 173
Query: 209 EDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSI 268
+++ G + L++ +L + E S + + + E Y + +R+ L QS YG+SI
Sbjct: 174 KEMKGFNKDLTQ-VLTKMNERSRMVGLEKSLEEMYVEIPSNEMRSFVMTLTQSMHYGSSI 232
Query: 269 GDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSII 323
L L S+ R +++E E++ L K++VP+I+F + ++++I P ++ ++
Sbjct: 233 YSVLTTLASDIREVQMLELEERIGKLAAKMSVPLIVFIMIPIVILIAAPGVMRLM 287
>gi|59711125|ref|YP_203901.1| bipartite nuclear localization signal containing protein [Vibrio
fischeri ES114]
gi|59479226|gb|AAW85013.1| bipartite nuclear localization signal containing protein [Vibrio
fischeri ES114]
Length = 290
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 65/274 (23%), Positives = 142/274 (51%), Gaps = 16/274 (5%)
Query: 53 EILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYS 112
+ LR++Q+ L ++ + L+N +LN +E I KLR AG+ +
Sbjct: 27 KFLREKQLHVLSGNNQKIK-ENELGGWLKNKASELNPD----EEEIKQKLRQAGWENTQY 81
Query: 113 LNILLVVRLVVPIIFLILGIIWIFG---YDKLLEYPFQLRVGAVILIGYVGFCAPSVWIS 169
+++ + ++ V L++G + IFG Y L + + A + + +V AP +++
Sbjct: 82 VHLFMPIKYSV----LLIGEV-IFGIAYYQSFLSSTAWV-IAASLWMVFV-IIAPDMYLQ 134
Query: 170 NLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAEL 229
++ R + P LDL+ +CV++G++++ +L + +++ G + L++ +L + E
Sbjct: 135 AKIKARVHRVSTQMPYLLDLMAVCVQTGMTVEASLSYLVKEMKGFNKDLTQ-VLTKMNER 193
Query: 230 SFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEK 289
S + + + E Y + +R+ L QS YG+SI + L L S+ R +++E E+
Sbjct: 194 SRMVGLEKSLEEMYVEIPSNEMRSFVMTLTQSMHYGSSIYNVLTTLASDIREVQMLELEE 253
Query: 290 KAASLGPKLTVPMIIFFLPVLILVIIGPAILSII 323
+ L K++VP+I+F + ++++I P ++ ++
Sbjct: 254 RIGKLAAKMSVPLIVFIMIPIVILIAAPGVMRLM 287
>gi|282865305|ref|ZP_06274357.1| type II secretion system protein [Streptomyces sp. ACTE]
gi|282559778|gb|EFB65328.1| type II secretion system protein [Streptomyces sp. ACTE]
Length = 295
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/164 (31%), Positives = 85/164 (51%), Gaps = 4/164 (2%)
Query: 154 ILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGG 213
+L G G+ V I + + +R+ I R PD LD+L + V +G+ QAL RVAE G
Sbjct: 120 VLFGVYGYFWTDVIIRSAISRRKDDIDRTLPDFLDVLAVVVSAGLGFRQALERVAEKYSG 179
Query: 214 QSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLR 273
P ++E+ +T+ ++ +R+ AF+ R + + V AL Q + G I D+L
Sbjct: 180 ---PWADELRITLRQMDMGVSRREAFDQLRKRNESEQVSMFVSALQQGEELGAPIVDTLI 236
Query: 274 VLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP-VLILVIIG 316
+ ++ R A +KAA PK T+ + F LP +IL+ +G
Sbjct: 237 QIANDMRRTDAQNARRKAAKAVPKATLIVTSFMLPGTMILIAVG 280
>gi|323529156|ref|YP_004231308.1| Type II secretion system F domain-containing protein [Burkholderia
sp. CCGE1001]
gi|323386158|gb|ADX58248.1| Type II secretion system F domain protein [Burkholderia sp.
CCGE1001]
Length = 293
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 90/174 (51%), Gaps = 4/174 (2%)
Query: 153 VILIG--YVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAED 210
++LIG +G+ P +W ++ ++R + I + LD L + VE+G++I+ A+++ E
Sbjct: 118 LVLIGAALLGYFYPRIWTRDVRRRRVAQILKHLSIYLDFLTLAVEAGLNINGAIQKAVEK 177
Query: 211 IGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGD 270
G + P E+ + +L NR A +R ++ V N A++Q++R G +
Sbjct: 178 --GPAGPFRWELEHVLRDLKSGLNRTEALRRLDDRLRIKEVTNFVGAVVQAERMGAGLAK 235
Query: 271 SLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIID 324
SLR + RSER AEK+A KL P+++F P+ +V+ P + +
Sbjct: 236 SLRFQSEQRRSERFQRAEKQAMEAPVKLVFPLLVFIFPITFIVLGFPIAMKFVQ 289
>gi|86144313|ref|ZP_01062645.1| Flp pilus assembly protein TadC [Vibrio sp. MED222]
gi|85837212|gb|EAQ55324.1| Flp pilus assembly protein TadC [Vibrio sp. MED222]
Length = 288
Score = 83.6 bits (205), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 62/247 (25%), Positives = 122/247 (49%), Gaps = 5/247 (2%)
Query: 74 TRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGII 133
TR+ K + K + + KL AAGF S++ ++ ++++V + L L
Sbjct: 43 TREEKKRADLFKAILSRISFNKHETKRKLVAAGFYSDFLADVYYLLKIVPFCVCLALIGF 102
Query: 134 WIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLIC 193
+ D + +GA +LI +G P ++S + I P LDL+ +C
Sbjct: 103 DFYSGDTKTVFALLYLMGA-LLIFIIG---PDSYVSARGKSNIKHISSRLPFLLDLMNVC 158
Query: 194 VESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRN 253
V +G++I+ +L +A+++ L+ + +T+ E S L + A E FY ++
Sbjct: 159 VHTGMTIESSLEYLAKELHSVDSNLAHVVRVTV-ERSRLVGLEKALEEFYELVPTSESQS 217
Query: 254 ATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILV 313
++QS ++G+S+G L L S+ R +M+ E++ +G K+++P+I F + +I++
Sbjct: 218 FVMTMVQSLQFGSSVGPVLVTLASDIRELNMMDLEERIGKMGAKMSIPLIAFIMVPIIIL 277
Query: 314 IIGPAIL 320
I P I+
Sbjct: 278 IAAPGIM 284
>gi|186473167|ref|YP_001860509.1| type II secretion system protein [Burkholderia phymatum STM815]
gi|184195499|gb|ACC73463.1| type II secretion system protein [Burkholderia phymatum STM815]
Length = 292
Score = 83.6 bits (205), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 85/166 (51%), Gaps = 2/166 (1%)
Query: 159 VGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPL 218
VG+ P +W+ ++ ++ +++ R P LD L + VE+G++++ A+++ E G PL
Sbjct: 125 VGYFYPRIWMRDVRRRYVATVLRQLPIYLDFLTLAVEAGLNVNGAIQKAVEK--GPDGPL 182
Query: 219 SEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSE 278
E + +L R A F R Q+ V N + + Q++R G+ + +LR +
Sbjct: 183 RREFEHVLRDLKSGLKRGDALRRFDERQQIGEVSNLVRTIAQAERMGSGLAKTLRFQSEQ 242
Query: 279 TRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIID 324
R+ER AEK+A KL P+++F PV +V+ P + +
Sbjct: 243 RRAERFQRAEKQAMEAPVKLLFPLLVFIFPVTFIVLGFPIAMKFMQ 288
>gi|121534350|ref|ZP_01666174.1| type II secretion system protein [Thermosinus carboxydivorans Nor1]
gi|121307120|gb|EAX48038.1| type II secretion system protein [Thermosinus carboxydivorans Nor1]
Length = 308
Score = 83.2 bits (204), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 92/177 (51%), Gaps = 7/177 (3%)
Query: 153 VILIGYVGFCA----PSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVA 208
++ + ++ F + P ++ + R+ SI++ PD LDLL + VE+G+ D AL +++
Sbjct: 131 IVGLSFMAFASALLLPFFLLNRKIAMRKRSIQKDLPDVLDLLTVSVEAGLGFDGALAKLS 190
Query: 209 EDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSI 268
E + G L +E + E+ R+ A R + + T +LIQ+D+ G SI
Sbjct: 191 EKMKGA---LVDEFTRALQEMRMGVPRREALRAMGLRCDVPDLSLFTTSLIQADQLGVSI 247
Query: 269 GDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDT 325
G LRV + R +R ++ A K+ +P++ F P + +V++GPAI+ I T
Sbjct: 248 GQVLRVQSASMREKRRQRTQELAMKAPVKMLLPLVFFIFPAIFVVVLGPAIIQIFLT 304
>gi|260462613|ref|ZP_05810819.1| type II secretion system protein [Mesorhizobium opportunistum
WSM2075]
gi|259031519|gb|EEW32789.1| type II secretion system protein [Mesorhizobium opportunistum
WSM2075]
Length = 321
Score = 83.2 bits (204), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 94/169 (55%), Gaps = 2/169 (1%)
Query: 155 LIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQ 214
LIG PS+ + ++ +R +PD +D+++ C ++G+S++ A+ RV ++ G
Sbjct: 149 LIGLGCLVIPSIALDRFENGQKRIYRRGFPDFMDMMITCADAGMSLEAAVERVGAELAGT 208
Query: 215 SVPLSEEM-LLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLR 273
L ++ ++T+ + P R+ A +R ++ R QS+ GTS+ D+LR
Sbjct: 209 HKWLGIQLSIMTLQLRAGKPLRE-ALRELADRIGLEEARALAVLFRQSEELGTSLTDALR 267
Query: 274 VLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
+ E R +R++ AE++A +L K+ +P+ + PV+++VI+ P I+ +
Sbjct: 268 IYSDEMRGQRILHAEERANALPVKMMIPLGLCIFPVVMMVIMLPLIIRM 316
>gi|291451546|ref|ZP_06590936.1| conserved hypothetical protein [Streptomyces albus J1074]
gi|291354495|gb|EFE81397.1| conserved hypothetical protein [Streptomyces albus J1074]
Length = 296
Score = 82.8 bits (203), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 58/210 (27%), Positives = 98/210 (46%), Gaps = 13/210 (6%)
Query: 105 AGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAP 164
AG +L+ R V + L+LG++++ L +L G A
Sbjct: 82 AGNPGGLTLDRYAARRFVYGVFGLVLGLVFLTNDSTLF----------ALLTFAFGLTAA 131
Query: 165 SVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLL 224
I V+ R+ I R PD LD+L + V SG+ QAL RVAE G P ++E+ +
Sbjct: 132 DALIWQAVRDRREVIDRTLPDFLDVLAVVVSSGLGFRQALDRVAERYEG---PWADELRI 188
Query: 225 TIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERL 284
T+ ++ +R+ AF+ R + V AL Q + G+ I D+L + ++ R
Sbjct: 189 TLRQMDMGVSRRQAFDELRRRNSSEQVAQFVSALQQGEELGSPIADTLIQIATDMRRTDA 248
Query: 285 MEAEKKAASLGPKLTVPMIIFFLPVLILVI 314
+ ++AA PK T+ ++F LP +++I
Sbjct: 249 QNSRRRAAKTIPKATMVTLVFLLPATMILI 278
>gi|113867007|ref|YP_725496.1| flp pilus assembly protein TadC [Ralstonia eutropha H16]
gi|113525783|emb|CAJ92128.1| flp pilus assembly protein TadC [Ralstonia eutropha H16]
Length = 293
Score = 82.8 bits (203), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 84/165 (50%), Gaps = 2/165 (1%)
Query: 160 GFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLS 219
GF P +W+ ++ ++ + R P LD L + VE+G++I+ AL + E G PL
Sbjct: 127 GFFYPRIWLRDVRKRNLLQVTRHLPVFLDFLTLSVEAGLNINGALLQAVEK--GPEGPLR 184
Query: 220 EEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSET 279
E + +L +R A +R ++ V N A+IQ++R G+ + +LR +
Sbjct: 185 REFEHVLRDLKSGLSRADALRRMDDRLRVKEVTNFVGAVIQAERMGSGLAATLRFQSEQR 244
Query: 280 RSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIID 324
R+ER AEK+A KL P+++F PV +V+ P ++ +
Sbjct: 245 RTERFQRAEKQAMEAPVKLIFPLVVFIFPVTFIVLGFPIVMKFMQ 289
>gi|239979681|ref|ZP_04702205.1| hypothetical protein SalbJ_09602 [Streptomyces albus J1074]
Length = 309
Score = 82.4 bits (202), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 58/210 (27%), Positives = 98/210 (46%), Gaps = 13/210 (6%)
Query: 105 AGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAP 164
AG +L+ R V + L+LG++++ L +L G A
Sbjct: 95 AGNPGGLTLDRYAARRFVYGVFGLVLGLVFLTNDSTLF----------ALLTFAFGLTAA 144
Query: 165 SVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLL 224
I V+ R+ I R PD LD+L + V SG+ QAL RVAE G P ++E+ +
Sbjct: 145 DALIWQAVRDRREVIDRTLPDFLDVLAVVVSSGLGFRQALDRVAERYEG---PWADELRI 201
Query: 225 TIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERL 284
T+ ++ +R+ AF+ R + V AL Q + G+ I D+L + ++ R
Sbjct: 202 TLRQMDMGVSRRQAFDELRRRNSSEQVAQFVSALQQGEELGSPIADTLIQIATDMRRTDA 261
Query: 285 MEAEKKAASLGPKLTVPMIIFFLPVLILVI 314
+ ++AA PK T+ ++F LP +++I
Sbjct: 262 QNSRRRAAKTIPKATMVTLVFLLPATMILI 291
>gi|320158388|ref|YP_004190766.1| type II/IV secretion system protein TadC, associated with Flp pilus
assembly [Vibrio vulnificus MO6-24/O]
gi|319933700|gb|ADV88563.1| type II/IV secretion system protein TadC, associated with Flp pilus
assembly [Vibrio vulnificus MO6-24/O]
Length = 292
Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 67/262 (25%), Positives = 136/262 (51%), Gaps = 9/262 (3%)
Query: 62 SLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRL 121
S++K S++ + + +F K+ + DE KL AAG S++ + +
Sbjct: 37 SVRKIIGSTKEQQKRDDLFLSFFKRFSFNK---DET-KKKLVAAGIYSDFIAQTYYLFK- 91
Query: 122 VVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKR 181
+VP+ FL +G + +++++ + +GA LI +V P +++S+ +
Sbjct: 92 IVPL-FLTIGGGLLAVSQEVIDFNEMILIGAFALIIFV--AGPDLYLSSRTNTITRHVSS 148
Query: 182 AWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFEN 241
P LDL+ +CV +G++I+ L +A+++ L+ + +T+ + S + + A E
Sbjct: 149 RLPFLLDLMNVCVHTGMTIEATLEYLAKELQTVDKYLAFTVNVTV-QRSKVIGIEKALEE 207
Query: 242 FYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVP 301
FY ++ L+QS ++G+S+G L L ++ R +ME E+K LG K+++P
Sbjct: 208 FYEMVPSSEAQSFVMTLVQSLQFGSSVGQVLGTLATDIRQINMMELEEKIGKLGAKMSIP 267
Query: 302 MIIFFLPVLILVIIGPAILSII 323
MI+F + +I++II P I+ ++
Sbjct: 268 MIVFIMVPIIILIIAPGIMRML 289
>gi|148974880|ref|ZP_01811860.1| Flp pilus assembly protein TadC [Vibrionales bacterium SWAT-3]
gi|145965389|gb|EDK30638.1| Flp pilus assembly protein TadC [Vibrionales bacterium SWAT-3]
Length = 288
Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 62/251 (24%), Positives = 127/251 (50%), Gaps = 7/251 (2%)
Query: 74 TRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLV-VPIIFLILGI 132
TR+ K + K + + + KL AAGF S++ + ++++V I +++G
Sbjct: 43 TREEKKRTDLFKSILSRISFNKDETKRKLVAAGFYSDFLADAYYLLKIVPFSICLILIGF 102
Query: 133 IWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLI 192
+ G ++L F L L+ +V AP ++S + I P LDL+ +
Sbjct: 103 DFYSGETEVL---FSLLYLLGALLAFV--IAPDAYVSARGKANIKHISSRLPFLLDLMNV 157
Query: 193 CVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVR 252
CV +G++I+ +L +A+++ L+ + +T+ E S L + A E FY +
Sbjct: 158 CVHTGMTIESSLEYLAKELHSIDSNLAHVVRVTV-ERSRLVGLEKALEEFYALVPTSESQ 216
Query: 253 NATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLIL 312
+ ++QS ++G+S+G L L ++ R +M+ E++ +G K+++P+I F + +++
Sbjct: 217 SFVMTMVQSLQFGSSVGPVLATLATDIRELNMMDLEERIGKMGAKMSIPLIAFIMVPIVV 276
Query: 313 VIIGPAILSII 323
+I P IL ++
Sbjct: 277 LIAAPGILRML 287
>gi|42522078|ref|NP_967458.1| Flp pilus assembly protein TadC [Bdellovibrio bacteriovorus HD100]
gi|39574609|emb|CAE78451.1| Flp pilus assembly protein TadC [Bdellovibrio bacteriovorus HD100]
Length = 258
Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/226 (23%), Positives = 110/226 (48%), Gaps = 14/226 (6%)
Query: 102 LRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVG----AVILIG 157
++ +G SE + + + ++ + I+F I LL F L++G V+ +G
Sbjct: 39 IKTSGLSSELNEDEFIGLQFLWGIMFPIF----------LLIMNFSLQLGLSPMVVVGMG 88
Query: 158 YVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVP 217
+GF P + ++R+ S++ P +DLL + VE+G+ A++++ + G
Sbjct: 89 LIGFYLPQIHARGEKKRRELSVRADLPFFIDLLALSVEAGLDFFSAIQKIVDKANGTDSV 148
Query: 218 LSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVS 277
L+EE + + ++ ++ A + R M+ + + L+ ++ G SI L+
Sbjct: 149 LAEEFSIVLKDIKIGSSKAQALKEMAERLDMNEITSFVAVLVDAESTGASISQVLKDQSV 208
Query: 278 ETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSII 323
+ R ER + AEK A + +P+++F LP + +++ GP +S +
Sbjct: 209 QMRLERFVRAEKAGAQASQTMLIPLMLFILPAVFIIVFGPVAVSFM 254
>gi|238750902|ref|ZP_04612399.1| Type II secretion system protein [Yersinia rohdei ATCC 43380]
gi|238710816|gb|EEQ03037.1| Type II secretion system protein [Yersinia rohdei ATCC 43380]
Length = 265
Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 60/213 (28%), Positives = 112/213 (52%), Gaps = 10/213 (4%)
Query: 111 YSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISN 170
Y +++VV LV+ +I L G+I I + G + ++G F P + I N
Sbjct: 57 YFKTLIIVVNLVILVILLSTGLINI-------NITVFIVFGLITIVG--TFFLPKIIIKN 107
Query: 171 LVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELS 230
++ KR S+ ++ P +D+ CV+SG++ID AL A+ + LS +++ +++ +
Sbjct: 108 ILYKRTESVLKSLPFFIDITAACVQSGMTIDGALNYTAKKFKLINPDLSL-IMIKMSKRA 166
Query: 231 FLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKK 290
+ ++A + + + +R AL S +G+SI D L L E R +L+ +E+K
Sbjct: 167 EINGLELAIKELHQCSTAMEIRMFCSALQYSISFGSSIYDQLAKLSQEMREMQLLVSEEK 226
Query: 291 AASLGPKLTVPMIIFFLPVLILVIIGPAILSII 323
+ L KLT P+ IF L I+++I P++L ++
Sbjct: 227 VSKLSTKLTFPLFIFILIPFIVLVISPSVLELL 259
>gi|327189775|gb|EGE56919.1| putative tadC pilus assembly protein [Rhizobium etli CNPAF512]
Length = 314
Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 58/218 (26%), Positives = 112/218 (51%), Gaps = 10/218 (4%)
Query: 100 NKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYV 159
N+L AG+ + ++ VVR VV I L+ G +W +++ Q+ A +++G
Sbjct: 83 NRLIRAGYFAAGAVTTFQVVRAVVCISVLV-GAVW--AANRIAPNMSQM---ATLILGMF 136
Query: 160 GFCAPSVWISNLVQKRQSS----IKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQS 215
A + ++ + +R ++ +R +PD +D+L++C+++G+SI+ A RVA + +
Sbjct: 137 AAGATFILVNIYIDRRGAAKEREYRRLFPDFMDMLIVCLDAGMSIEAAANRVAREFVDKQ 196
Query: 216 VPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVL 275
+ + + E+ + A N R ++D R + QS+ GTS+ +LRV
Sbjct: 197 QDFGLHLSIMMLEVRGGRRLREALANLATRLRIDEARALSVLFRQSEELGTSVTQTLRVY 256
Query: 276 VSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILV 313
E R R++ AE+KA +L K+ +P+ F PV + +
Sbjct: 257 SKEMRDIRVVRAEEKANALPVKMLLPLGAFLFPVSLFI 294
>gi|29829793|ref|NP_824427.1| hypothetical protein SAV_3251 [Streptomyces avermitilis MA-4680]
gi|29606902|dbj|BAC70962.1| hypothetical protein [Streptomyces avermitilis MA-4680]
Length = 301
Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 60/210 (28%), Positives = 100/210 (47%), Gaps = 13/210 (6%)
Query: 105 AGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAP 164
AG +LN R V I ++LG+I++ L +G + G A
Sbjct: 87 AGNPGGLTLNRYAARRAVYGIFGVVLGLIFLTNGHPLFA------LGTLAF----GLLAA 136
Query: 165 SVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLL 224
I V++R+ I R PD LD+L + V +G+ QAL RVAE G P ++E+ +
Sbjct: 137 DALIWQAVRERKDVIDRTLPDFLDVLAVVVSAGLGFRQALDRVAEKYEG---PWADELRI 193
Query: 225 TIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERL 284
T+ ++ +R+ AF+ R + V AL Q + G+ I ++L L ++ R
Sbjct: 194 TLRQMDMGVSRRQAFDELRKRNSSEQVAQFVSALQQGEELGSPIAETLIQLATDMRRTDA 253
Query: 285 MEAEKKAASLGPKLTVPMIIFFLPVLILVI 314
A ++AA PK T+ ++F LP +++I
Sbjct: 254 QNARRRAAKTIPKATMVTLVFMLPATMILI 283
>gi|260778157|ref|ZP_05887050.1| type II/IV secretion system protein TadC associated with Flp pilus
assembly [Vibrio coralliilyticus ATCC BAA-450]
gi|260606170|gb|EEX32455.1| type II/IV secretion system protein TadC associated with Flp pilus
assembly [Vibrio coralliilyticus ATCC BAA-450]
Length = 284
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 93/155 (60%)
Query: 172 VQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSF 231
V + + I + PDALDL+++CV SG++++ R V E++ S L+ E LT E+S
Sbjct: 127 VNQIRQEISKVAPDALDLMVVCVASGLTLENTFRVVGEEMTSVSPALAREWALTATEMSV 186
Query: 232 LPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKA 291
L + Q A +N R ++ + N + Q+ ++GT + +L ++ S++R +L++ E+
Sbjct: 187 LDSPQQALQNLDQRLELPDINNMVVTMSQALQFGTPLSQALSLIASDSRQYQLLDLEEWV 246
Query: 292 ASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
+ K++ P+++F + ++++I+ P +LS+ +T+
Sbjct: 247 GKIPAKMSFPLVVFIMLPVVVMIVAPVVLSLFNTL 281
>gi|320008843|gb|ADW03693.1| Type II secretion system F domain protein [Streptomyces
flavogriseus ATCC 33331]
Length = 295
Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/174 (32%), Positives = 89/174 (51%), Gaps = 5/174 (2%)
Query: 152 AVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDI 211
A+ +I + G V I V+KR+ I R PD LD+L + V +G+ QAL RVAE
Sbjct: 119 ALFMIAF-GLFWGEVGIWAAVRKRRDDIDRTLPDFLDVLAVVVSAGLGFRQALDRVAEKY 177
Query: 212 GGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDS 271
G P S+E+ +T+ ++ +R+ AF+ R + V AL Q + G I D+
Sbjct: 178 QG---PWSDELRITLRQMDMGVSRRQAFDELRRRNDSEQVAMFVTALQQGEELGAPIVDT 234
Query: 272 LRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDT 325
L + ++ R A +KAA PK T+ + F +P ++++G A+L DT
Sbjct: 235 LIAIANDMRRTDAQNARRKAAKAVPKATLMVTTFMIPA-TMILMGAAMLLGSDT 287
>gi|51891530|ref|YP_074221.1| hypothetical protein STH392 [Symbiobacterium thermophilum IAM
14863]
gi|51855219|dbj|BAD39377.1| conserved hypothetical protein [Symbiobacterium thermophilum IAM
14863]
Length = 289
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 63/223 (28%), Positives = 108/223 (48%), Gaps = 24/223 (10%)
Query: 103 RAAGFRSE--YSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVG 160
R AG +E Y L ++L L +P++ L G+ A L +G
Sbjct: 83 RPAGIGAEEFYFLQLVLAFSLALPLLGL-------HGWT------------AAALGFLLG 123
Query: 161 FCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSE 220
P W+ V +R ++R P + LL C+E+G+ + +A+RRVA + G L+
Sbjct: 124 LWLPRAWLRRRVSERTRILRRELPRFVHLLATCLEAGLGLTEAVRRVAAESPGL---LAG 180
Query: 221 EMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETR 280
EML + E++ Q A+ + R + ++ AL QS R+G SI + LR + R
Sbjct: 181 EMLRAVHEMAAGKPAQRAWRDLTERHESPELKEVVSALQQSHRWGVSIAEQLRFTLRTMR 240
Query: 281 SERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSII 323
+ +A++KA ++ VPM+ L I++I+GPA+L ++
Sbjct: 241 ERKQQQAQQKAHEASVRMRVPMVALILMPTIVIILGPAVLRLL 283
>gi|283769336|ref|ZP_06342235.1| type II secretion system F domain protein [Bulleidia extructa
W1219]
gi|283103993|gb|EFC05377.1| type II secretion system F domain protein [Bulleidia extructa
W1219]
Length = 313
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 80/318 (25%), Positives = 158/318 (49%), Gaps = 19/318 (5%)
Query: 14 LAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVA-VEREILRKQQITSLQKDSASSRL 72
L ++++T + ++S+I + L ++K +A E + R + S SR+
Sbjct: 8 LLISVSTGLFVYSMILVKFVNE--RTHLRLQLKDIAETENSLRRNSDDMDFENKSFYSRV 65
Query: 73 RTRDSKSLRNFVKKLNLKAILVDENIVN-KLRAAGFRSEYSLNILLVVRLVVPIIFLILG 131
+ L F+ ++ D++ +N +L AG R + L +R++V + +I
Sbjct: 66 IFPGIERLSLFIGRV-FPIAQKDQDKLNLQLLQAGLRIK--AQTYLTIRILVIAVCMIFT 122
Query: 132 IIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLL 191
I+I Y + + IL GY+ +++ V +RQ+ +++ P LDLL
Sbjct: 123 YIYIGPYHLYFGFSVMMSALGGILSGYI---ISRFVLASRVTRRQNLLEKQLPGFLDLLS 179
Query: 192 ICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCV 251
+CVE+G+ DQA++ V + G+ LS+E + ++S R+ A + R +
Sbjct: 180 VCVEAGLGFDQAIQYVCHEYKGE---LSDEFKVVQRDISLGSTRKQALMSLCQRVTSSQM 236
Query: 252 RNATQALIQSDRYGTSIGDSLRVLVSETRSERLM---EAEKKAASLGPKLTVPMIIFFLP 308
T A++Q+D G S+ + +L +++R+ RL + E+KA L K+ +PM+IF P
Sbjct: 237 TTFTAAVLQADEMGISLKN---ILNAQSRNVRLAYKNKIEEKAQKLSTKILIPMLIFIFP 293
Query: 309 VLILVIIGPAILSIIDTM 326
V+ ++++GPA+ I+ +
Sbjct: 294 VIFIILLGPAVPGIMKAL 311
>gi|187921509|ref|YP_001890541.1| type II secretion system protein [Burkholderia phytofirmans PsJN]
gi|187719947|gb|ACD21170.1| type II secretion system protein [Burkholderia phytofirmans PsJN]
Length = 293
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 91/175 (52%), Gaps = 4/175 (2%)
Query: 152 AVILIGY--VGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAE 209
A++L+G +G+ P +W ++ ++R + I + P LD L + VE+G++I+ A+++ E
Sbjct: 117 ALVLLGVAVLGYFYPRIWTRDVRRRRVARILKHLPIYLDFLTLAVEAGLNINGAIQKAVE 176
Query: 210 DIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIG 269
G PL E + +L NR A +R ++ V N ++Q++R G+ +
Sbjct: 177 K--GPEGPLRWEFEHVLRDLKSGLNRMEALYRMDDRLRIKEVTNLVGTVVQAERMGSGLS 234
Query: 270 DSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIID 324
SLR + RSER AEK+A KL P+++F P+ +V+ P + +
Sbjct: 235 KSLRFQSEQRRSERFQRAEKQAMEAPVKLVFPLLVFIFPITFIVLGFPIAMKFVQ 289
>gi|330830427|ref|YP_004393379.1| Flp pilus assembly protein TadC [Aeromonas veronii B565]
gi|328805563|gb|AEB50762.1| Flp pilus assembly protein TadC [Aeromonas veronii B565]
Length = 294
Score = 80.5 bits (197), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 97/176 (55%), Gaps = 3/176 (1%)
Query: 154 ILIGYV-GFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIG 212
+L+ YV G P W+ +K +++ ++ PDA+DLL+I VE+G+++D+AL RV +
Sbjct: 120 VLMAYVVGAGLPERWLQWRARKVKAAQQKVVPDAIDLLVISVEAGLALDRALLRVGHYLE 179
Query: 213 GQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSL 272
L+ + L T AE+ ++ RT + + L + +YG+ + +++
Sbjct: 180 ALEPGLARQFLRTHAEIQMRGDQASCLARLAWRTGLPELDRLANTLQMAQQYGSPLAETM 239
Query: 273 RVLVSETRSERLMEAEKKAASLGPKLT-VPMIIFFLPVLILVIIGPAILSIIDTMK 327
R + E R R + E++A SL K+T + M + LP+L+L II P + +I++++
Sbjct: 240 RTISQEARQMRRLALEEQAGSLPGKITLIQMALIMLPMLVL-IIAPTLNLLINSLR 294
>gi|302521640|ref|ZP_07273982.1| integral membrane protein [Streptomyces sp. SPB78]
gi|318057612|ref|ZP_07976335.1| hypothetical protein SSA3_06724 [Streptomyces sp. SA3_actG]
gi|318080452|ref|ZP_07987784.1| hypothetical protein SSA3_28136 [Streptomyces sp. SA3_actF]
gi|302430535|gb|EFL02351.1| integral membrane protein [Streptomyces sp. SPB78]
Length = 300
Score = 80.5 bits (197), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 86/163 (52%), Gaps = 4/163 (2%)
Query: 152 AVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDI 211
A + +G+ G A I V++R+ I R PD LD+L + V +G+ QAL RVAE
Sbjct: 124 AFLALGF-GLVAADATIWQAVRERRDVIDRTLPDFLDVLAVVVSAGLGFRQALERVAEKY 182
Query: 212 GGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDS 271
G P ++E+ +T+ ++ +R+ AF+ R + V AL Q + G+ I ++
Sbjct: 183 EG---PWADELRITLRQMDMGVSRRQAFDELRRRNNSEQVAQFVSALQQGEELGSPIAET 239
Query: 272 LRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVI 314
L + ++ R +A ++AA PK T+ ++F LP +++I
Sbjct: 240 LIQIANDMRRTDAQQARRRAAKTIPKATMVTLVFMLPATMILI 282
>gi|293604635|ref|ZP_06687037.1| type II secretion system protein F domain protein [Achromobacter
piechaudii ATCC 43553]
gi|292816966|gb|EFF76045.1| type II secretion system protein F domain protein [Achromobacter
piechaudii ATCC 43553]
Length = 236
Score = 80.5 bits (197), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 89/176 (50%), Gaps = 2/176 (1%)
Query: 142 LEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISID 201
L+ P Q + + IG V AP + L +KR+ SI+R P D++ +CVE+G+S+
Sbjct: 53 LDVPIQRGLLWSMAIGLVASMAPRASLHGLSEKRRRSIERDLPFVFDMMTLCVEAGLSVQ 112
Query: 202 QALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQS 261
AL++ A+ G L + + +AE+ R A + +R+ + AL Q+
Sbjct: 113 GALQQAAQS--GPKGALRDALAQALAEMRAGVTRMDAIKALADRSNSPVAKTWAGALAQA 170
Query: 262 DRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGP 317
+ G S+G LR ++ RS+R + AE++A K+ +P+I P +V+ P
Sbjct: 171 EALGISLGPVLRAQAAQCRSDRHVRAEQQAMQAPVKMLLPLIGCIFPCTFIVLAFP 226
>gi|264680614|ref|YP_003280524.1| type II secretion system protein [Comamonas testosteroni CNB-2]
gi|262211130|gb|ACY35228.1| type II secretion system protein [Comamonas testosteroni CNB-2]
Length = 317
Score = 80.1 bits (196), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 62/237 (26%), Positives = 114/237 (48%), Gaps = 9/237 (3%)
Query: 90 KAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLR 149
KA++ E+ + L G+ S + L+ R ++ ++F +L G + L Y F
Sbjct: 85 KALVAQEDRI-LLSKCGWGSTRAQLQYLIARCLISVLFSLLAAFVFLGSKQFLLYLFAAF 143
Query: 150 VGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAE 209
+GF P + ++ ++R++ + R P +DLL + +G+S+DQ L+ +
Sbjct: 144 T--------IGFLLPKWVLRSVARRRRACVARELPLFVDLLGLLQGTGMSLDQTLQVIGS 195
Query: 210 DIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIG 269
D G LS E+ L + S R+ +F Q D + N T +IQ DRYG ++
Sbjct: 196 DFGNVMPVLSREIQLANQQYSRGSTRERSFGRMSEVYQNDNLANLTSLMIQIDRYGGAVQ 255
Query: 270 DSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
+ LR+ R +R + ++ + K+T M++ LP LI++ GP L++I +
Sbjct: 256 EPLRIFGERLREQRKAKMKELIGKISVKMTAVMVVTLLPALIIITAGPGFLAVIRAL 312
>gi|332970974|gb|EGK09948.1| hypothetical protein HMPREF9374_2751 [Desmospora sp. 8437]
Length = 306
Score = 80.1 bits (196), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 61/238 (25%), Positives = 113/238 (47%), Gaps = 10/238 (4%)
Query: 88 NLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQ 147
N++ + E + + L AG +++ L ++V I I G+++ L PF
Sbjct: 70 NIELLSDPEELKDDLIKAGHPYGLTVDRLQGAKVVFAIGGTIFGLLYFL--IGLPLAPFA 127
Query: 148 LRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRV 207
+ G ++ G+ P + QKRQ I+ PD +D++ I +++G+++D AL
Sbjct: 128 VAFGPLL-----GYLFPIYMVKFKAQKRQEEIQYELPDFMDMMSITLQAGMALDTALDYY 182
Query: 208 AEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTS 267
G PLSEE+ E+SF R+ A+ +RT + Q++IQ+ GT
Sbjct: 183 VSTNNG---PLSEEIARMNQEISFGVQRETAYRALIDRTDSTELETLVQSMIQAHNLGTP 239
Query: 268 IGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDT 325
I ++ + E R+ R +A+++A PK++ + P ++L++ G IL T
Sbjct: 240 ISETFALQAMEMRNMRAEKAKEQAGKSEPKISAVAGLVITPSIMLLVFGAFILKFFFT 297
>gi|329943876|ref|ZP_08292147.1| bacterial type II secretion system protein F domain protein
[Actinomyces sp. oral taxon 170 str. F0386]
gi|328531582|gb|EGF58418.1| bacterial type II secretion system protein F domain protein
[Actinomyces sp. oral taxon 170 str. F0386]
Length = 292
Score = 80.1 bits (196), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 61/197 (30%), Positives = 100/197 (50%), Gaps = 15/197 (7%)
Query: 127 FLILGII---WIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAW 183
F++LGII + F D+L+ + VG +L+ + VW++N +R I R
Sbjct: 101 FVVLGIIVLLFCFLIDELI-----IGVGLGLLLAFW----MQVWLTNTGLRRSQQIDRDL 151
Query: 184 PDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFY 243
PD LD+L + V SG+S A+ RV+ G PL+EEM I + R+ AF
Sbjct: 152 PDFLDVLSVTVRSGMSFRPAVERVSSFHEG---PLAEEMRGAIYSMRLGVTRRDAFIAAR 208
Query: 244 NRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMI 303
+ ++ + V A +Q++ GT + D+L + SE R ER + + AA PK+ + +
Sbjct: 209 DNSRSENVAIFVSAFLQAEELGTPLADALVDISSEIRRERAQQVRRAAARAQPKIAIVVT 268
Query: 304 IFFLPVLILVIIGPAIL 320
LP +++I+G IL
Sbjct: 269 TMILPATLILILGSMIL 285
>gi|329935278|ref|ZP_08285244.1| type II secretion system F protein [Streptomyces griseoaurantiacus
M045]
gi|329305101|gb|EGG48960.1| type II secretion system F protein [Streptomyces griseoaurantiacus
M045]
Length = 296
Score = 80.1 bits (196), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 48/155 (30%), Positives = 79/155 (50%), Gaps = 3/155 (1%)
Query: 160 GFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLS 219
G A I ++ R+ I R PD LD+L + V +G+ QAL RVAE G P +
Sbjct: 127 GLLAADALIWQAIRDRKDVIDRTLPDFLDVLAVVVSAGLGFRQALDRVAERYEG---PWA 183
Query: 220 EEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSET 279
+E+ +T+ ++ +R+ AF+ R + V AL Q + G+ I D+L L ++
Sbjct: 184 DELRITLRQMDMGVSRRQAFDELRRRNTSEQVAQFVSALQQGEELGSPIADTLIQLATDM 243
Query: 280 RSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVI 314
R A ++AA PK T+ ++F LP +++I
Sbjct: 244 RRTDAQNARRRAAKTIPKATMVTLVFMLPATMILI 278
>gi|297192377|ref|ZP_06909775.1| integral membrane protein [Streptomyces pristinaespiralis ATCC
25486]
gi|197723022|gb|EDY66930.1| integral membrane protein [Streptomyces pristinaespiralis ATCC
25486]
Length = 296
Score = 79.7 bits (195), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 56/206 (27%), Positives = 94/206 (45%), Gaps = 33/206 (16%)
Query: 112 SLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNL 171
+ +L+ +V+ ++FL+ G+ W V +
Sbjct: 108 AFGMLMNGHVVLAVLFLLYGLFWT-----------------------------DVLLRAA 138
Query: 172 VQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSF 231
+ +R+ I+R PD LD+L + V +G+ QAL RVAE G P S+E+ +T+ ++
Sbjct: 139 IARRRDDIERTLPDFLDVLAVVVSAGLGFRQALERVAEKYAG---PWSDELRITLRQMDM 195
Query: 232 LPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKA 291
R+ AFE R + + V AL Q + G I D+L + ++ R A +KA
Sbjct: 196 GMGRREAFEQLRRRNESEQVSMFVSALQQGEELGAPIVDTLIQIANDMRRTDAQNARRKA 255
Query: 292 ASLGPKLTVPMIIFFLP-VLILVIIG 316
A PK T+ + F LP +IL++ G
Sbjct: 256 AKAVPKATLIVTSFMLPGTMILIVAG 281
>gi|149175458|ref|ZP_01854079.1| hypothetical protein PM8797T_18379 [Planctomyces maris DSM 8797]
gi|148845726|gb|EDL60068.1| hypothetical protein PM8797T_18379 [Planctomyces maris DSM 8797]
Length = 370
Score = 79.3 bits (194), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 54/225 (24%), Positives = 113/225 (50%), Gaps = 4/225 (1%)
Query: 100 NKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYV 159
+L+AAG+ ++L+ +R + + L+ + + E P + A++++ +
Sbjct: 127 KELQAAGYYQPHALHNFSAIRFISILGTLLFFGGVLLLAPERFEIPILV---AMLIVPIL 183
Query: 160 GFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLS 219
+ P + +++ R+S I++ PD LD+L +CV G+++ AL+++ ++ L+
Sbjct: 184 VWAVPFLIVTSKASDRRSEIEQGIPDMLDMLNMCVSQGMTVPHALKKIISELAKVYPALA 243
Query: 220 EEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSET 279
E+ + I + S Q A NF R + V + LIQ+D+ GT++ +L+
Sbjct: 244 HELKIVIEQSSIGTFSQ-ALSNFSKRIDVPEVHSFAALLIQTDQMGTNVTSALQEYSDNM 302
Query: 280 RSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIID 324
R A++KA KL P ++ +P + + ++GPAI+ + D
Sbjct: 303 RESLSQRADEKANKATFKLLFPTVLCLMPAIYIFLLGPAIVELSD 347
>gi|295836764|ref|ZP_06823697.1| integral membrane protein [Streptomyces sp. SPB74]
gi|295826195|gb|EFG64730.1| integral membrane protein [Streptomyces sp. SPB74]
Length = 300
Score = 79.0 bits (193), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 82/150 (54%), Gaps = 5/150 (3%)
Query: 165 SVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLL 224
++W V++R++ I R PD LD+L + V +G+ QAL RVAE G P ++E+ +
Sbjct: 138 TIW--QAVRERRAVIDRTLPDFLDVLAVVVSAGLGFRQALERVAEKYEG---PWADELRI 192
Query: 225 TIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERL 284
T+ ++ +R+ AF+ R + V AL Q + G+ I ++L + ++ R
Sbjct: 193 TLRQMDMGVSRRQAFDELRRRNNSEQVAQFVSALQQGEELGSPIAETLIQIANDMRRTDA 252
Query: 285 MEAEKKAASLGPKLTVPMIIFFLPVLILVI 314
+A ++AA PK T+ ++F LP +++I
Sbjct: 253 QQARRRAAKTIPKATMATLVFMLPATMILI 282
>gi|222111305|ref|YP_002553569.1| type II secretion system protein [Acidovorax ebreus TPSY]
gi|221730749|gb|ACM33569.1| type II secretion system protein [Acidovorax ebreus TPSY]
Length = 288
Score = 79.0 bits (193), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 87/166 (52%), Gaps = 4/166 (2%)
Query: 153 VILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRR-VAEDI 211
+++I + F P +W+ ++R +I +A P +DLL + +E+G+++ A+++ VA+
Sbjct: 116 IVVIAMLAFFYPDLWLKETTKQRNLAILKALPFFIDLLTLSIEAGLNLSGAMQQAVAKSA 175
Query: 212 GGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDS 271
GG PL E+ + ++ R A +F R + + AL+Q ++ G+S+G
Sbjct: 176 GG---PLMVEINRVLRDVRAGKARIDALRDFSARLDFTPITSFVSALVQGEKTGSSLGPI 232
Query: 272 LRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGP 317
LR + R+ER + AEK A K+ P+I F P +VI P
Sbjct: 233 LRAQAEQRRTERFLRAEKLAMEAPVKMLGPLIFFIFPCTFIVIGFP 278
>gi|218676254|ref|YP_002395073.1| putative Flp pilus assembly protein TadC [Vibrio splendidus LGP32]
gi|218324522|emb|CAV26000.1| putative Flp pilus assembly protein TadC [Vibrio splendidus LGP32]
Length = 288
Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 61/250 (24%), Positives = 126/250 (50%), Gaps = 5/250 (2%)
Query: 74 TRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGII 133
TR+ K ++ +K + + KL AAGF S++ + +++++ + L+L I
Sbjct: 43 TREEKKRKDLLKAVLSQISFNKIETKRKLVAAGFYSDFLADAYYLLKIIPFSVCLVL--I 100
Query: 134 WIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLIC 193
Y+ E F L L+ ++ AP ++S + I P LDL+ +C
Sbjct: 101 GFDFYNGETEVIFALLYLLGALLAFI--IAPDSYVSARGKANIKHISSRLPFLLDLMNVC 158
Query: 194 VESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRN 253
V +G++I+ +L +A+++ L+ + +T+ E S L + A E FY ++
Sbjct: 159 VHTGMTIESSLEYLAKELHSVDSNLAHVVRVTV-ERSRLVGLEKALEEFYELVPTSESQS 217
Query: 254 ATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILV 313
++QS ++G+S+G L L ++ R +M+ E++ +G K+++P+I F + ++++
Sbjct: 218 FVMTMVQSLQFGSSVGPVLATLATDIRELNMMDLEERIGKMGAKMSIPLIAFIMVPIVVL 277
Query: 314 IIGPAILSII 323
I P IL ++
Sbjct: 278 IAAPGILRML 287
>gi|89100216|ref|ZP_01173083.1| hypothetical protein B14911_20190 [Bacillus sp. NRRL B-14911]
gi|89085066|gb|EAR64200.1| hypothetical protein B14911_20190 [Bacillus sp. NRRL B-14911]
Length = 312
Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 59/222 (26%), Positives = 110/222 (49%), Gaps = 10/222 (4%)
Query: 102 LRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGF 161
LR AG E ++ ++V II I G+ + LL P L A + + GF
Sbjct: 89 LRKAGNPFEMTVGRFQGFKIVCVIIGFIAGLFAV-----LLGLP--LSNIAFVTLPIFGF 141
Query: 162 CAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEE 221
P + + + +KRQ ++ PD LD + + +++G ++D AL+ V + G P+ EE
Sbjct: 142 FVPILLVRSKAKKRQQQLRSDLPDFLDTVSVSLQAGSNMDSALKEVIKYFSG---PIKEE 198
Query: 222 MLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRS 281
+ + E+ R+ A+ R + ++ ++LIQ+ R G + +L+ + R
Sbjct: 199 FSIFLQEIDLGVPREKAYGGLLERNDNEEFQSFIKSLIQATRLGVPMASTLKSQAEDIRK 258
Query: 282 ERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSII 323
L + ++KAA PK+T+ P+++L+IIG +L++I
Sbjct: 259 ISLEQVKEKAAKASPKVTMITSFIIAPLIMLLIIGLVLLNMI 300
>gi|323493929|ref|ZP_08099046.1| putative Flp pilus assembly protein TadC [Vibrio brasiliensis LMG
20546]
gi|323311870|gb|EGA65017.1| putative Flp pilus assembly protein TadC [Vibrio brasiliensis LMG
20546]
Length = 288
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 60/250 (24%), Positives = 125/250 (50%), Gaps = 5/250 (2%)
Query: 74 TRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGII 133
TR+ + + VK + E KL AAGF S+Y ++ +++ ++P L L +I
Sbjct: 43 TREERKRVDLVKTALSQFSFNKEETRKKLVAAGFYSDYLADVYYLMK-IIPFT-LCLALI 100
Query: 134 WIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLIC 193
+ E F L L ++ P ++++ + I P LDL+ +C
Sbjct: 101 GFDYFKGETEIAFSLLYLLGALGLFI--IGPDAFVASRGKANTKHISSRLPFLLDLMNVC 158
Query: 194 VESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRN 253
V +G++I+ +L +++++ L+ + +T+ + S L + A E FY+ ++
Sbjct: 159 VHTGMTIESSLDYLSKELVTVDRNLAYVVRVTV-DRSRLVGLEKALEEFYDLVPTSESQS 217
Query: 254 ATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILV 313
++QS ++G+SIG L L ++ R +M+ E++ +G K+++P+I F + ++++
Sbjct: 218 FVMTMVQSLQFGSSIGPVLATLATDIRELNMMDLEERIGKMGAKMSIPLIAFIMVPIVVL 277
Query: 314 IIGPAILSII 323
I P IL ++
Sbjct: 278 IAAPGILRML 287
>gi|312883313|ref|ZP_07743039.1| putative Flp pilus assembly protein TadC [Vibrio caribbenthicus
ATCC BAA-2122]
gi|309368929|gb|EFP96455.1| putative Flp pilus assembly protein TadC [Vibrio caribbenthicus
ATCC BAA-2122]
Length = 288
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 65/271 (23%), Positives = 134/271 (49%), Gaps = 28/271 (10%)
Query: 69 SSRLRTRDSK-SLRNFVKKLNLKAILV--------DENIVNKLRAAGFRSEYSLNILLVV 119
S +L+ + SK +L NF ++ N I +++ +L +AGF L + +
Sbjct: 29 SMKLKVKISKLTLNNFHEEKNKNKIFYIISRINYDKDDLEKRLFSAGFYHPMILKLYYPL 88
Query: 120 RLVVPIIF-------LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLV 172
+ ++ +F I+GII + YD F V +V +I F P I +
Sbjct: 89 KYIIMFLFSVCILISFIVGIISL--YDL-----FLYNVISVFMI----FFIPDKIIGLRI 137
Query: 173 QKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFL 232
+ +I P LDL+ +CV +G++I+ +L +A+++ L+ + LT+ E + +
Sbjct: 138 KSNIKNISSRLPFLLDLMNVCVHTGMTIESSLEYLAKELQMVDRQLARVVTLTV-ERAKI 196
Query: 233 PNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAA 292
A + FY+ ++ L+QS ++G+S+G L L + R +M+ E+K
Sbjct: 197 VGLDKALQEFYDLVPTSESQSMVMTLVQSLQFGSSVGAVLSTLSKDIRELNMMDIEEKIG 256
Query: 293 SLGPKLTVPMIIFFLPVLILVIIGPAILSII 323
+G K+T+P+++F + ++++I+ P ++ ++
Sbjct: 257 KMGAKMTMPLVVFIMIPMLVLIVAPKVMRVM 287
>gi|261251276|ref|ZP_05943850.1| type II/IV secretion system protein TadC associated with Flp pilus
assembly [Vibrio orientalis CIP 102891]
gi|260938149|gb|EEX94137.1| type II/IV secretion system protein TadC associated with Flp pilus
assembly [Vibrio orientalis CIP 102891]
Length = 288
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 61/250 (24%), Positives = 124/250 (49%), Gaps = 5/250 (2%)
Query: 74 TRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGII 133
TR+ + + VK + E KL AAGF S+Y ++ +++ ++P L L +I
Sbjct: 43 TREERKRIDLVKTALSQFSFNKEETRKKLVAAGFYSDYLADVYYLMK-IIPFT-LCLALI 100
Query: 134 WIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLIC 193
+ E F L L ++ P +I++ I P LDL+ +C
Sbjct: 101 GFDYFKGETEVAFSLLYLLGALGLFI--IGPDAFIASRGNANTKHISSRLPFLLDLMNVC 158
Query: 194 VESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRN 253
V +G++I+ +L +++++ L+ + +T+ + S L + A E FY+ ++
Sbjct: 159 VHTGMTIESSLDYLSKELVTVDRNLAYVVRVTV-DRSRLVGLEKALEEFYDLVPTSESQS 217
Query: 254 ATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILV 313
++QS ++G+SIG L L ++ R +M+ E++ +G K+++P+I F + ++++
Sbjct: 218 FVMTMVQSLQFGSSIGPVLATLATDIRELNMMDLEERIGKMGAKMSIPLIAFIMVPIVVL 277
Query: 314 IIGPAILSII 323
I P IL ++
Sbjct: 278 IAAPGILRML 287
>gi|148657456|ref|YP_001277661.1| type II secretion system protein [Roseiflexus sp. RS-1]
gi|148569566|gb|ABQ91711.1| type II secretion system protein [Roseiflexus sp. RS-1]
Length = 309
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 96/177 (54%), Gaps = 8/177 (4%)
Query: 153 VILIGYVGFCA---PSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAE 209
++L+G +GFCA P VW+S +++RQ+ + A PDALDLL I +G+S + A++ +
Sbjct: 133 LLLLGGIGFCAFFLPDVWLSRRIRQRQTELLNALPDALDLLAIASAAGLSFESAMQEITS 192
Query: 210 DIGGQSVPLSEEMLLTIAELSF-LPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSI 268
+ L+ E + ++S +P RQ A + RT + + + A+ Q++ G SI
Sbjct: 193 KWTNE---LAREFSRVLRDMSMGVPRRQ-ALTDMAERTGVSDIASFVSAVKQAEALGISI 248
Query: 269 GDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDT 325
G L V E R+ R A+++A K+ P++ P + V++GPA+ +++
Sbjct: 249 GRVLTVQADEMRTRRRQRAQERANQAPVKMMFPLVFLIFPAIFAVLLGPAVPQLLEA 305
>gi|37676258|ref|NP_936654.1| Flp pilus assembly protein TadC [Vibrio vulnificus YJ016]
gi|37200799|dbj|BAC96624.1| Flp pilus assembly protein TadC [Vibrio vulnificus YJ016]
Length = 292
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 62/244 (25%), Positives = 117/244 (47%), Gaps = 9/244 (3%)
Query: 62 SLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRL 121
S++K S++ + + +F K+ + DE KL AAG S++ + +
Sbjct: 37 SVRKIIGSTKEQQKRDDLFLSFFKRFSFNK---DET-KKKLVAAGVYSDFIAQTYYLFK- 91
Query: 122 VVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKR 181
++P+ IL +++ + L L + ++I VG P ++IS+ I
Sbjct: 92 IIPLFLTILISVYLMSIEVLDTNELILTIALGMVIFVVG---PDMYISSRANSITRHISS 148
Query: 182 AWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFEN 241
P LDL+ +CV +G++I+ L +A ++ L+ + +T+ + + A E
Sbjct: 149 RLPFLLDLMNVCVHTGMTIEATLEYLANELQTVDKYLAFTVNVTVQRSKVIGINK-ALEE 207
Query: 242 FYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVP 301
FY ++ LIQS ++G+S+G L L ++ R +ME E+K LG K+++P
Sbjct: 208 FYEMVPSSEAQSFVMTLIQSLQFGSSVGQVLGTLATDIRQINMMELEEKIGKLGAKMSIP 267
Query: 302 MIIF 305
MI+F
Sbjct: 268 MIVF 271
>gi|13475422|ref|NP_106986.1| hypothetical protein mlr6486 [Mesorhizobium loti MAFF303099]
gi|14026174|dbj|BAB52772.1| mlr6486 [Mesorhizobium loti MAFF303099]
Length = 305
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 79/148 (53%)
Query: 155 LIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQ 214
LIG PS+ + +++ +R +PD +D+++ C ++G+S++ A+ RV ++ G
Sbjct: 133 LIGLGCLVIPSIALDRFESRQKQVYRRGFPDFMDMMITCADAGMSLEAAVERVGAELAGT 192
Query: 215 SVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRV 274
L ++ + +L + A +R +D R QS+ GTS+ D+LR+
Sbjct: 193 HKWLGIQLSIVTLQLRAGKPLREALRELADRIGLDEARALAVLFRQSEELGTSLTDALRI 252
Query: 275 LVSETRSERLMEAEKKAASLGPKLTVPM 302
E R++R+M AE++A +L K+ +P+
Sbjct: 253 YSDEMRTQRIMNAEERANALPVKMMIPL 280
>gi|330819179|ref|YP_004348041.1| type II secretion system protein [Burkholderia gladioli BSR3]
gi|327371174|gb|AEA62529.1| type II secretion system protein [Burkholderia gladioli BSR3]
Length = 293
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 83/165 (50%), Gaps = 2/165 (1%)
Query: 160 GFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLS 219
G+ P +W+ ++ + R +I++ P LD L + VE+G++I+ A+++ E G L
Sbjct: 127 GYSYPRIWVRDVRRARVVAIRKQLPVYLDFLTLAVEAGLNINGAIQKAVEK--GPDGALR 184
Query: 220 EEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSET 279
E + +L NR A F R + + N A+IQ++R G+ + +LR +
Sbjct: 185 SEFEHVLRDLKSGLNRADALRRFDERQDIKEITNFVGAVIQAERMGSGLAGTLRFQSEQR 244
Query: 280 RSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIID 324
R+ER AEK A KL P+++F PV +V+ P + +
Sbjct: 245 RAERFQRAEKLAMEAPVKLVFPLMMFIFPVTFVVLGFPIAMRFVQ 289
>gi|326424177|ref|NP_762076.2| type II/IV secretion system protein TadC [Vibrio vulnificus CMCP6]
gi|319999560|gb|AAO07066.2| Type II/IV secretion system protein TadC, associated with Flp pilus
assembly [Vibrio vulnificus CMCP6]
Length = 292
Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 62/244 (25%), Positives = 117/244 (47%), Gaps = 9/244 (3%)
Query: 62 SLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRL 121
S++K S++ + + +F K+ + DE KL AAG S++ + +
Sbjct: 37 SVRKIIGSTKEQKKRDDLFLSFFKRFSFNK---DET-KKKLVAAGVYSDFIAQTYYLFK- 91
Query: 122 VVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKR 181
++P+ IL +++ L L + ++I VG P ++IS+ I
Sbjct: 92 IIPLFLTILISVYLMSIKVLDTNELILTIALGMVIFVVG---PDMYISSRANSITRHISS 148
Query: 182 AWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFEN 241
P LDL+ +CV +G++I+ L +A+++ L+ + +T+ + + A E
Sbjct: 149 RLPFLLDLMNVCVHTGMTIEATLEYLAKELQTVDKYLAFTVNVTVQRSKVIGINK-ALEE 207
Query: 242 FYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVP 301
FY ++ LIQS ++G+S+G L L ++ R +ME E+K LG K+++P
Sbjct: 208 FYEMVPSSEAQSFVMTLIQSLQFGSSVGQVLGTLATDIRQINMMELEEKIGKLGAKMSIP 267
Query: 302 MIIF 305
MI+F
Sbjct: 268 MIVF 271
>gi|281356958|ref|ZP_06243448.1| Type II secretion system F domain protein [Victivallis vadensis
ATCC BAA-548]
gi|281316516|gb|EFB00540.1| Type II secretion system F domain protein [Victivallis vadensis
ATCC BAA-548]
Length = 292
Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 82/165 (49%), Gaps = 6/165 (3%)
Query: 165 SVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSV--PLSEEM 222
S+W+S ++ R SI +A P+ LDLL++ VESG I ALR DI + PL EE+
Sbjct: 130 SMWLSMRIKARHLSIMKALPNVLDLLMLSVESGRDIVSALR----DILARRRMDPLGEEL 185
Query: 223 LLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSE 282
++ R A + R + + A++Q++ G SI LRV R++
Sbjct: 186 TRAFRQMQLGRKRADALRDMAQRVRQPDLTTTVNAIVQAEELGVSIVQLLRVQGDMQRNK 245
Query: 283 RLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
R AEK A K+ P++ LP +++VI GP L ++ +
Sbjct: 246 RFSLAEKLANEAAVKIIFPVVFCILPSVLIVIFGPLALQVLQMFR 290
>gi|319795559|ref|YP_004157199.1| type II secretion system f domain [Variovorax paradoxus EPS]
gi|315598022|gb|ADU39088.1| Type II secretion system F domain [Variovorax paradoxus EPS]
Length = 295
Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 42/179 (23%), Positives = 90/179 (50%), Gaps = 2/179 (1%)
Query: 149 RVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVA 208
+V ++ +G+ P +W+ + +KR+ +I R P LD++ +C ++G+S+ A+ +
Sbjct: 119 KVWVTLMSCAMGWYYPVMWMRDRRKKREKNILRTLPGYLDMITLCCQAGLSLTGAIAQAV 178
Query: 209 EDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSI 268
+ G ++ + + ++ E+ +R A R +++ L Q++ G S+
Sbjct: 179 QKGPGGALGIEFDRMMR--EMRTGVSRMDALNAMAERLDNKHIKSLVSNLTQAESLGASL 236
Query: 269 GDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
D+L + + R+ER AEK A K+ P++IF PV ++I P ++ + T +
Sbjct: 237 ADTLSAISDQRRTERFQHAEKLAMEAPVKMIGPLVIFIFPVTFIIIFFPLVMQFLQTQR 295
>gi|299532823|ref|ZP_07046210.1| type II secretion system protein [Comamonas testosteroni S44]
gi|298719047|gb|EFI60017.1| type II secretion system protein [Comamonas testosteroni S44]
Length = 311
Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 87/168 (51%)
Query: 159 VGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPL 218
+GF P + ++ +R++S+ R P +DLL + +G+S+DQ L+ + D G L
Sbjct: 139 IGFLLPKWVLRSVAGRRRASVARELPLLVDLLGLLQGTGMSLDQTLQVIGSDFGNVMPVL 198
Query: 219 SEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSE 278
S E+ L + S R+ +F Q D + N T +IQ DRYG ++ + LR+
Sbjct: 199 SREIKLANQQYSRGSTRERSFGRMSEVYQNDNLANLTSLMIQIDRYGGAVQEPLRIFGER 258
Query: 279 TRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
R +R + ++ + K+T M++ LP LI++ GP L++I +
Sbjct: 259 LREQRKAKMKELIGKISVKMTAVMVVTLLPALIIITAGPGFLAVIRAL 306
>gi|255020083|ref|ZP_05292154.1| type II secretion system protein [Acidithiobacillus caldus ATCC
51756]
gi|254970445|gb|EET27936.1| type II secretion system protein [Acidithiobacillus caldus ATCC
51756]
Length = 337
Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 47/152 (30%), Positives = 82/152 (53%), Gaps = 4/152 (2%)
Query: 164 PSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEML 223
P +W+ ++RQ I + P LD + + VE G+++ A++ +A D G + PL E
Sbjct: 175 PDLWLVEQAKRRQKRILKDLPVYLDFITLMVEGGLNLTGAIQ-IAVDKGPEG-PLRNEFR 232
Query: 224 LTIAEL-SFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSE 282
+ + +L S +P +V F F +R M +R+ A+IQ++ G S+ L+ + R E
Sbjct: 233 IILRDLRSGMPRVEV-FRRFGDRVAMQELRSLVTAIIQAEERGGSLAPVLKAQAEQRREE 291
Query: 283 RLMEAEKKAASLGPKLTVPMIIFFLPVLILVI 314
R + AEK A KL P+I+F P++ +V+
Sbjct: 292 RFLRAEKAALEAPVKLLAPLIMFIFPIVFIVL 323
>gi|218708112|ref|YP_002415733.1| putative bacterial type II secretion system protein [Vibrio
splendidus LGP32]
gi|218321131|emb|CAV17081.1| putative bacterial type II secretion system protein, TadC-like
protein [Vibrio splendidus LGP32]
Length = 301
Score = 76.6 bits (187), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 89/160 (55%), Gaps = 1/160 (0%)
Query: 164 PSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEML 223
P + +S++ + RQ I R P +DL+ ICV++G++I+ +++ ++ ++ LS +L
Sbjct: 140 PDLVLSSMAKNRQRRISRQMPYLIDLMAICVQTGMTIEASMKYLSIEMKSFDKELSS-LL 198
Query: 224 LTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSER 283
+ + L + A E Y + VR+ L QS ++G+SI + L L + R +
Sbjct: 199 EVTNQRARLVGMENALEELYRKVPSPEVRSFVMTLTQSIQHGSSIYNVLTTLAGDIREVQ 258
Query: 284 LMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSII 323
++E E++ L K+++P+I+F L ++ VI P ++ ++
Sbjct: 259 MLELEEEIGKLAAKMSIPLIVFILIPIVFVIAAPGVMRMM 298
>gi|86147189|ref|ZP_01065505.1| bipartite nuclear localization signal containing protein, TadC-like
protein [Vibrio sp. MED222]
gi|85835073|gb|EAQ53215.1| bipartite nuclear localization signal containing protein, TadC-like
protein [Vibrio sp. MED222]
Length = 301
Score = 76.6 bits (187), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 89/160 (55%), Gaps = 1/160 (0%)
Query: 164 PSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEML 223
P + +S++ + RQ I R P +DL+ ICV++G++I+ +++ ++ ++ LS +L
Sbjct: 140 PDLVLSSMAKNRQRRISRQMPYLIDLMAICVQTGMTIEASMKYLSIEMKSFDKELSS-LL 198
Query: 224 LTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSER 283
+ + L + A E Y + VR+ L QS ++G+SI + L L + R +
Sbjct: 199 EVTNQRARLVGMENALEELYRKVPSPEVRSFVMTLTQSIQHGSSIYNVLTTLAGDIREVQ 258
Query: 284 LMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSII 323
++E E++ L K+++P+I+F L ++ VI P ++ ++
Sbjct: 259 MLELEEEIGKLAAKMSIPLIVFILIPIVFVIAAPGVMRMM 298
>gi|258620798|ref|ZP_05715833.1| Flp pilus assembly protein TadC [Vibrio mimicus VM573]
gi|258624768|ref|ZP_05719699.1| Flp pilus assembly protein TadC [Vibrio mimicus VM603]
gi|262173889|ref|ZP_06041566.1| type II/IV secretion system protein TadC associated with Flp pilus
assembly [Vibrio mimicus MB-451]
gi|258582930|gb|EEW07748.1| Flp pilus assembly protein TadC [Vibrio mimicus VM603]
gi|258586996|gb|EEW11710.1| Flp pilus assembly protein TadC [Vibrio mimicus VM573]
gi|261891247|gb|EEY37234.1| type II/IV secretion system protein TadC associated with Flp pilus
assembly [Vibrio mimicus MB-451]
Length = 291
Score = 76.6 bits (187), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 66/251 (26%), Positives = 120/251 (47%), Gaps = 13/251 (5%)
Query: 74 TRDSKSLRNFVKKL-NLKAILVDENIVNKLRAAGFRSEY---SLNILLVVRLVVPIIFLI 129
TR+ K+ FV L N+ + DE KL AG +++ S + ++ + F I
Sbjct: 44 TREEKNRFEFVYSLLNMVSFNQDET-KKKLVKAGIYNQFIARSYYLFKIIPFGLCAFFSI 102
Query: 130 LGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDL 189
L ++ G L +GA++ + P ++I+ +K I P LDL
Sbjct: 103 LA--FLSGKTDETMLVVSLAIGAIVFL-----LGPDMYIAARGKKITKKISSRLPFLLDL 155
Query: 190 LLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMD 249
+ +CV +G++I+ L +A ++ L+ + T+ E S L + A FY+
Sbjct: 156 MNVCVHTGMTIEACLEYLAFELRTVDHHLAYVVKKTV-ERSKLVGLEKALNEFYDLVPTA 214
Query: 250 CVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPV 309
++ + QS +YG+SIG L L S+ R +M+ E+K +G K+++P+I F +
Sbjct: 215 EAQSFVMTMTQSLKYGSSIGPVLATLASDIREMNMMDLEEKIGKMGAKMSIPLIAFIMVP 274
Query: 310 LILVIIGPAIL 320
+I++I P I+
Sbjct: 275 IIILIAAPGIM 285
>gi|226310159|ref|YP_002770053.1| hypothetical protein BBR47_05720 [Brevibacillus brevis NBRC 100599]
gi|226093107|dbj|BAH41549.1| conserved hypothetical membrane protein [Brevibacillus brevis NBRC
100599]
Length = 311
Score = 76.6 bits (187), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 77/313 (24%), Positives = 145/313 (46%), Gaps = 18/313 (5%)
Query: 18 ITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDS 77
I T V +F L++A+ + +EK+ K +A E+ + +++++S RL R
Sbjct: 5 IITCVFLFLLLFAICLKEWYRYSIEKQ-KLLAHVHEMSGHKNYGVRKQETSSERLVKRLL 63
Query: 78 KSLRNFV---KKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIW 134
+ ++ +++N + + + L AG + ++ V++ + ++ +I G ++
Sbjct: 64 RYGDDYAVMGQRINFFS--ESHEVEDWLLRAGRPLDLTVAQFQGVKIFMALLGIIAGTLF 121
Query: 135 IFGYDKLLEYPF-QLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLIC 193
+L +PF L + A LIGY P + + + RQ ++ P+ LD + +
Sbjct: 122 F-----ILRFPFSHLGLIAWPLIGYF---LPILLLKKKARDRQHQLRYDLPEFLDTVSVT 173
Query: 194 VESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRN 253
+++G+S+DQALR V + G P+ EE EL R+ A+E R +
Sbjct: 174 LQAGVSLDQALREVIKFFDG---PIREEFSRFNQELDLGVQREKAYEQLLRRNDNPEFQM 230
Query: 254 ATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILV 313
+ALIQ R G I + + R R ++KAA PK+T+ P I++
Sbjct: 231 LIKALIQGMRLGVPIAVTFKAQAENMRRIRKELIKEKAAKASPKVTLITTFIVTPTAIIL 290
Query: 314 IIGPAILSIIDTM 326
I G +L+I+D
Sbjct: 291 IGGLMVLNILDNF 303
>gi|261856881|ref|YP_003264164.1| type II secretion system F domain protein [Halothiobacillus
neapolitanus c2]
gi|261837350|gb|ACX97117.1| Type II secretion system F domain protein [Halothiobacillus
neapolitanus c2]
Length = 298
Score = 76.3 bits (186), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 80/152 (52%), Gaps = 2/152 (1%)
Query: 153 VILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIG 212
++L +G+ PS+W++ + RQ + + P LD +++ VE+G++I + + +
Sbjct: 125 LVLGAVLGWLYPSLWLTERRKHRQRLVIKDLPVFLDFIVMAVEAGLNITGGIEQAT--LK 182
Query: 213 GQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSL 272
G PL++E + ++ R A + R M + + T LIQ+DR G S+G SL
Sbjct: 183 GPKGPLAQEFRRLLRDMRSGLARAEALKRMAERMDMPQISSFTGTLIQADRVGASLGASL 242
Query: 273 RVLVSETRSERLMEAEKKAASLGPKLTVPMII 304
RV + R ER + AEK A K+ +P+++
Sbjct: 243 RVQADQRREERFLRAEKLALEAPVKMMLPLVM 274
>gi|28900581|ref|NP_800236.1| putative TadC protein [Vibrio parahaemolyticus RIMD 2210633]
gi|260365461|ref|ZP_05777998.1| Flp pilus assembly protein TadC [Vibrio parahaemolyticus K5030]
gi|260877526|ref|ZP_05889881.1| Flp pilus assembly protein TadC [Vibrio parahaemolyticus AN-5034]
gi|260897533|ref|ZP_05906029.1| Flp pilus assembly protein TadC [Vibrio parahaemolyticus Peru-466]
gi|260901735|ref|ZP_05910130.1| Flp pilus assembly protein TadC [Vibrio parahaemolyticus AQ4037]
gi|28808961|dbj|BAC62069.1| putative TadC [Vibrio parahaemolyticus RIMD 2210633]
gi|308087116|gb|EFO36811.1| Flp pilus assembly protein TadC [Vibrio parahaemolyticus Peru-466]
gi|308090674|gb|EFO40369.1| Flp pilus assembly protein TadC [Vibrio parahaemolyticus AN-5034]
gi|308108821|gb|EFO46361.1| Flp pilus assembly protein TadC [Vibrio parahaemolyticus AQ4037]
gi|308114358|gb|EFO51898.1| Flp pilus assembly protein TadC [Vibrio parahaemolyticus K5030]
gi|328470523|gb|EGF41434.1| putative TadC protein [Vibrio parahaemolyticus 10329]
Length = 288
Score = 76.3 bits (186), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 62/246 (25%), Positives = 119/246 (48%), Gaps = 12/246 (4%)
Query: 83 FVKKLNL---KAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLI--LGIIWIFG 137
FV KL+L + E N L AG SE+ +++ ++P++F + +G +I G
Sbjct: 49 FVDKLSLHLSRLSFNKEETKNNLVRAGIHSEFIAQAYYLLK-IIPLVFCLAFIGYSYIQG 107
Query: 138 YDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESG 197
E F + L V AP ++IS+ + P LDL+ +CV +G
Sbjct: 108 -----EMEFSSAFISFSLSMLVCLIAPDMYISSRGNANVRHVSSRLPFLLDLMNVCVHTG 162
Query: 198 ISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQA 257
++++ +L ++ ++ L+ + T +E + + A FY+ ++
Sbjct: 163 MTLEASLDYLSNELKTVDENLAYVVKKT-SERAKIVGLDRALTEFYDLVPTTEAQSFVMT 221
Query: 258 LIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGP 317
L QS +YG+S+G L L S+ R ++E E+K +G K+++PMI F + ++++I P
Sbjct: 222 LTQSLKYGSSVGAVLASLASDIREINMLELEEKIGKMGAKMSIPMIAFIMIPIVVLIAAP 281
Query: 318 AILSII 323
I+ ++
Sbjct: 282 GIMRML 287
>gi|255658710|ref|ZP_05404119.1| putative type II secretion system protein [Mitsuokella multacida
DSM 20544]
gi|260849099|gb|EEX69106.1| putative type II secretion system protein [Mitsuokella multacida
DSM 20544]
Length = 307
Score = 76.3 bits (186), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 85/163 (52%), Gaps = 3/163 (1%)
Query: 164 PSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEML 223
P V+++ +Q+RQ I+ P+ LDLL + V++G+S D AL ++ + G P +E
Sbjct: 148 PVVFLNTTIQRRQKQIEHQLPEVLDLLCVSVQAGLSFDAALSKITARMKG---PFIDECR 204
Query: 224 LTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSER 283
++ R+ A + +R ++ V ++IQ++R GTS+G +L+ R R
Sbjct: 205 RMQDDIRMGVVRRTAMRSMADRCGLEDVSLFMTSIIQAERLGTSMGKTLKNQADNIRERR 264
Query: 284 LMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
+ +A K+ P+++F P + +V + P++L ++ +
Sbjct: 265 RQYVKAQAMKAPVKIVFPLVLFIFPAIFVVTLVPSLLYLLKNL 307
>gi|262164953|ref|ZP_06032691.1| type II/IV secretion system protein TadC associated with Flp pilus
assembly [Vibrio mimicus VM223]
gi|262027333|gb|EEY46000.1| type II/IV secretion system protein TadC associated with Flp pilus
assembly [Vibrio mimicus VM223]
Length = 291
Score = 76.3 bits (186), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 89/174 (51%), Gaps = 6/174 (3%)
Query: 147 QLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRR 206
L +GA++ + P ++I+ +K I P LDL+ +CV +G++I+ L
Sbjct: 118 SLAIGAIVFL-----LGPDMYIAARGKKITKKISSRLPFLLDLMNVCVHTGMTIEACLEY 172
Query: 207 VAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGT 266
+A ++ L+ + T+ E S L + A FY+ ++ + QS +YG+
Sbjct: 173 LAFELRTVDHHLAYVVKKTV-ERSKLVGLEKALNEFYDLVPTAEAQSFVMTMTQSLKYGS 231
Query: 267 SIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAIL 320
SIG L L S+ R +M+ E+K +G K+++P+I F + +I++I P I+
Sbjct: 232 SIGPVLATLASDIREMNMMDLEEKIGKMGAKMSIPLIAFIMVPIIILIAAPGIM 285
>gi|121607251|ref|YP_995058.1| type II secretion system protein [Verminephrobacter eiseniae
EF01-2]
gi|121551891|gb|ABM56040.1| type II secretion system protein [Verminephrobacter eiseniae
EF01-2]
Length = 313
Score = 76.3 bits (186), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 83/167 (49%), Gaps = 2/167 (1%)
Query: 159 VGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPL 218
+G+ P++W+ + + R+ + R P LD++ +CVE+G+++ A+ + G +
Sbjct: 147 LGWFYPAIWLKDRIALRRRELLRMMPFFLDIITLCVEAGLNMHGAIAQAVAK--GPQGTV 204
Query: 219 SEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSE 278
EE + ++ R + + R V A+IQ++R G ++G LR +
Sbjct: 205 REEFQRVLRDVRAGKARTESLRDMAERLNEPGVTQFVMAVIQAERMGMNLGPVLRAQADQ 264
Query: 279 TRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDT 325
RSER + AEK A K+ +P+I F P +V++ P + I+T
Sbjct: 265 QRSERFLRAEKLAMEAPVKMLLPLIAFIFPCTFIVLLFPIAMKFINT 311
>gi|238790284|ref|ZP_04634058.1| Flp pilus assembly protein TadC [Yersinia frederiksenii ATCC 33641]
gi|238721634|gb|EEQ13300.1| Flp pilus assembly protein TadC [Yersinia frederiksenii ATCC 33641]
Length = 282
Score = 75.9 bits (185), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 92/166 (55%), Gaps = 27/166 (16%)
Query: 171 LVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGG---QSVPLSEEMLLTI- 226
+V R I+R P +DLL ICV+SG++I+ +L+ +AE++G VP + ++ I
Sbjct: 128 IVNARIEKIERDMPLFVDLLAICVQSGLTIESSLKFLAENVGDINDNFVPFLDRLVKKIE 187
Query: 227 -----AELSFL----PNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVS 277
A L+ L P+R+V+ M CV L QS RYG+SI + L L S
Sbjct: 188 VNGLEAGLTHLQKELPSREVS---------MLCV-----TLQQSLRYGSSIYEYLMELSS 233
Query: 278 ETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSII 323
E R +L++ E+ L K+++P+++FF+ ++++I P I+ ++
Sbjct: 234 EMRELQLLKTEEIIGKLSAKMSIPLVLFFMFPVVIIIAAPGIMRVM 279
>gi|260775648|ref|ZP_05884544.1| type II/IV secretion system protein TadC associated with Flp pilus
assembly [Vibrio coralliilyticus ATCC BAA-450]
gi|260608064|gb|EEX34233.1| type II/IV secretion system protein TadC associated with Flp pilus
assembly [Vibrio coralliilyticus ATCC BAA-450]
Length = 292
Score = 75.9 bits (185), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 93/177 (52%), Gaps = 3/177 (1%)
Query: 147 QLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRR 206
QL + A+ LI + P +++ + + Q I P LDL+ +CV++G++++ +++
Sbjct: 115 QLAIIALWLIAVI--VVPDLYLEHRRKVLQDKISNQLPYLLDLMAMCVQTGMTVEASIQY 172
Query: 207 VAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGT 266
++ ++ L M + + E S L A + Y R VR+ L QS RYG+
Sbjct: 173 LSSELSALDKDLGHTMNI-VNERSRLVGLDQALDELYQRFPATEVRSFVMTLKQSLRYGS 231
Query: 267 SIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSII 323
+I L L S+ R R++ E+K L K++VP+I+F L ++++I P I+ ++
Sbjct: 232 AIYSVLNNLASDIREVRVLALEEKIGKLSAKMSVPLILFILIPIVILIAAPGIMRLM 288
>gi|153836407|ref|ZP_01989074.1| Flp pilus assembly protein TadC [Vibrio parahaemolyticus AQ3810]
gi|149750309|gb|EDM61054.1| Flp pilus assembly protein TadC [Vibrio parahaemolyticus AQ3810]
Length = 288
Score = 75.9 bits (185), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 61/246 (24%), Positives = 119/246 (48%), Gaps = 12/246 (4%)
Query: 83 FVKKLNL---KAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLI--LGIIWIFG 137
F+ KL+L + E N L AG SE+ +++ ++P++F + +G +I G
Sbjct: 49 FIDKLSLHLSRLSFNKEETKNNLVRAGIHSEFIAQAYYLLK-IIPLVFCLAFIGYSYIQG 107
Query: 138 YDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESG 197
E F + L V AP ++IS+ + P LDL+ +CV +G
Sbjct: 108 -----EMEFSSAFISFSLSMLVCLIAPDMYISSRGNANVRHVSSRLPFLLDLMNVCVHTG 162
Query: 198 ISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQA 257
++++ +L ++ ++ L+ + T +E + + A FY+ ++
Sbjct: 163 MTLEASLDYLSNELKTVDENLAYVVKKT-SERAKIVGLDRALTEFYDLVPTTEAQSFVMT 221
Query: 258 LIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGP 317
L QS +YG+S+G L L S+ R ++E E+K +G K+++PMI F + ++++I P
Sbjct: 222 LTQSLKYGSSVGAVLASLASDIREINMLELEEKIGKMGAKMSIPMIAFIMIPIVVLIAAP 281
Query: 318 AILSII 323
I+ ++
Sbjct: 282 GIMRML 287
>gi|209546474|ref|YP_002278392.1| type II secretion system protein [Rhizobium leguminosarum bv.
trifolii WSM2304]
gi|209537718|gb|ACI57652.1| type II secretion system protein [Rhizobium leguminosarum bv.
trifolii WSM2304]
Length = 314
Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 68/294 (23%), Positives = 140/294 (47%), Gaps = 17/294 (5%)
Query: 27 LIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQK----DSASSRLRTRDSKSLRN 82
+ +AV+I + + EL R + V+V + K T+ ++ D+ + L +++ +R
Sbjct: 11 VFFAVLIFTAAASELFFRQREVSVR---VSKSSATAREEFHLGDTTIADLGEAENRLIRR 67
Query: 83 FVKKLNLKAILVDENI---VNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYD 139
+ + D N+ N+L AG+ + ++ VR V I +++ ++W +
Sbjct: 68 Y-----FEITRRDTNVNSTQNRLIRAGYFAAGAVTTFQAVRAAV-CIGVMVSMVWTLNWV 121
Query: 140 KLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGIS 199
+ A+ G F +++I ++ +R +PD +D+L++C+++G+S
Sbjct: 122 VPDMSGVATLIAAMFAAGST-FILVNIYIDRRGAAKEREYRRLFPDFMDMLIVCLDAGMS 180
Query: 200 IDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALI 259
I+ A RVA + + + + + E+ + A N R ++D R +
Sbjct: 181 IEAAANRVAREFVDKRQDFGLHLSIMMLEVRGGRRLREALANLAIRLRIDEARALSVLFR 240
Query: 260 QSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILV 313
QS+ GTS+ +LRV E R R++ AE+KA +L K+ +P+ F PV +++
Sbjct: 241 QSEELGTSVTQTLRVYCKEMRDIRIVRAEEKANALPVKMLLPLGAFLFPVSLII 294
>gi|59713408|ref|YP_206183.1| bipartite nuclear localization signal containing protein [Vibrio
fischeri ES114]
gi|59481656|gb|AAW87295.1| bipartite nuclear localization signal containing protein [Vibrio
fischeri ES114]
Length = 303
Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 60/234 (25%), Positives = 120/234 (51%), Gaps = 18/234 (7%)
Query: 96 ENIVNKLRAAG-FRSEYSLNILLVVRLVVPIIFLIL----GIIWIF-GYDKLLEYPFQLR 149
++I K +AG + S+Y+ L +P+ +L GII++ G D + Q+
Sbjct: 78 DSIERKFYSAGLYESKYA-------HLYMPVKYLTAAIGSGIIYLLLGKDSSMTT--QVA 128
Query: 150 VGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAE 209
+ + L+ V P +S+ + + + P LDLL +CV +G++I+ +L +A+
Sbjct: 129 LMCIWLV--VCISIPDAILSSRKKALEEKLSGQLPYLLDLLAMCVHTGMTIESSLSYLAK 186
Query: 210 DIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIG 269
++ G L+ M+ + + + + A + Y R + +R+ L QS YG+SI
Sbjct: 187 EMQGFDKDLAH-MIARTNDRANIVGLEPALDELYVRVPTNEMRSFVMTLKQSLHYGSSIY 245
Query: 270 DSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSII 323
+ L L ++ RS RL+ E+K L K++VP+I+F + ++++I P ++ ++
Sbjct: 246 EILNTLAADIRSVRLLSLEEKVGKLAAKMSVPLILFIMIPVVILIAAPGVMRMM 299
>gi|197337342|ref|YP_002157817.1| bipartite nuclear localization signal containing protein [Vibrio
fischeri MJ11]
gi|197314594|gb|ACH64043.1| bipartite nuclear localization signal containing protein [Vibrio
fischeri MJ11]
Length = 293
Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 60/234 (25%), Positives = 120/234 (51%), Gaps = 18/234 (7%)
Query: 96 ENIVNKLRAAG-FRSEYSLNILLVVRLVVPIIFLIL----GIIWIF-GYDKLLEYPFQLR 149
++I K +AG + S+Y+ L +P+ +L GII++ G D + Q+
Sbjct: 68 DSIERKFYSAGLYESKYA-------HLYMPVKYLSAAIGSGIIYLLLGKDSSMTT--QVA 118
Query: 150 VGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAE 209
+ + L+ V P +S+ + + + P LDLL +CV +G++I+ +L +A+
Sbjct: 119 LMCIWLV--VCISIPDAILSSRKKALEEKLSGQLPYLLDLLAMCVHTGMTIESSLSYLAK 176
Query: 210 DIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIG 269
++ G L+ M+ + + + + A + Y R + +R+ L QS YG+SI
Sbjct: 177 EMQGFDKDLAH-MIARTNDRANIVGLEPALDELYVRVPTNEMRSFVMTLKQSLHYGSSIY 235
Query: 270 DSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSII 323
+ L L ++ RS RL+ E+K L K++VP+I+F + ++++I P ++ ++
Sbjct: 236 EILNTLAADIRSVRLLSLEEKVGKLAAKMSVPLILFIMIPVVILIAAPGVMRMM 289
>gi|260892665|ref|YP_003238762.1| Type II secretion system F domain protein [Ammonifex degensii KC4]
gi|260864806|gb|ACX51912.1| Type II secretion system F domain protein [Ammonifex degensii KC4]
Length = 269
Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/202 (26%), Positives = 96/202 (47%), Gaps = 13/202 (6%)
Query: 121 LVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIK 180
L + +F +L + ++FG D V + + F AP +W+++ V +R++ I+
Sbjct: 74 LCLGFVFSVLPLCFLFGVDFFW---------VVFFLPLLWF-APVLWLNSRVARRKALIR 123
Query: 181 RAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFE 240
R PD L + +G + ALR +GG P+ EE+ + E N A E
Sbjct: 124 RQLPDFSVFLATALTAGADLPTALREAGTHVGG---PIGEEVERVLLEFGLGRNLVSALE 180
Query: 241 NFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV 300
+ +R MD +R + ++ YGTS+ + +R RS R E + A L L
Sbjct: 181 DMADRCDMDELRLLLWSAGRAYAYGTSVAEEVRAQADRQRSMRRFEVMEAAGKLAIYLIF 240
Query: 301 PMIIFFLPVLILVIIGPAILSI 322
P++ F L L++V++ PA +++
Sbjct: 241 PILFFMLLPLMVVVMYPAAVAL 262
>gi|318604217|emb|CBY25715.1| type II/IV secretion system protein TadC,associated with Flp pilus
assembly [Yersinia enterocolitica subsp. palearctica
Y11]
Length = 274
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/174 (31%), Positives = 94/174 (54%), Gaps = 7/174 (4%)
Query: 152 AVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDI 211
+ILI + F P V + N+V KR S+ R+ P +D+ CV+SG++ID +L A+
Sbjct: 103 TIILIMTLYF--PKVIVKNIVAKRTKSLLRSLPFFIDITAACVQSGMTIDNSLSYSAKKF 160
Query: 212 GGQSVPLSEEMLLTI--AELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIG 269
+ LS ML AE++ L N F + T+++ +R AL S +G ++
Sbjct: 161 ELINADLSLIMLKVTRRAEINGLENAIKEFNQ--SSTELE-IRMFCSALQYSISFGATVY 217
Query: 270 DSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSII 323
+ L L + R +L+ E+K + L KLT+P+ +F L I+++I P++L +I
Sbjct: 218 EQLIKLSKDMREMQLLVTEEKISKLTAKLTIPLFLFILIPFIVLVISPSVLELI 271
>gi|332162959|ref|YP_004299536.1| putative tight adherance operon protein [Yersinia enterocolitica
subsp. palearctica 105.5R(r)]
gi|325667189|gb|ADZ43833.1| putative tight adherance operon protein [Yersinia enterocolitica
subsp. palearctica 105.5R(r)]
Length = 274
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/174 (31%), Positives = 94/174 (54%), Gaps = 7/174 (4%)
Query: 152 AVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDI 211
+ILI + F P V + N+V KR S+ R+ P +D+ CV+SG++ID +L A+
Sbjct: 103 TIILIMTLYF--PKVIVKNIVAKRTKSLLRSLPFFIDITAACVQSGMTIDNSLSYSAKKF 160
Query: 212 GGQSVPLSEEMLLTI--AELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIG 269
+ LS ML AE++ L N F + T+++ +R AL S +G ++
Sbjct: 161 ELINADLSLIMLKVTRRAEINGLENAIKEFNQ--SSTELE-IRMFCSALQYSISFGATVY 217
Query: 270 DSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSII 323
+ L L + R +L+ E+K + L KLT+P+ +F L I+++I P++L +I
Sbjct: 218 EQLIKLSKDMREMQLLVTEEKISKLTAKLTIPLFLFILIPFIVLVISPSVLELI 271
>gi|154250530|ref|YP_001411354.1| type II secretion system protein [Parvibaculum lavamentivorans
DS-1]
gi|154154480|gb|ABS61697.1| type II secretion system protein [Parvibaculum lavamentivorans
DS-1]
Length = 315
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 94/170 (55%), Gaps = 2/170 (1%)
Query: 154 ILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGG 213
+ GY+ + + + +R ++I+R P LD++L+ +++G+S+DQ +R VA +
Sbjct: 129 VFFGYLFYRYVLIALGVYADRRANTIRRELPPVLDIMLMALDAGVSVDQCMRYVAGVVR- 187
Query: 214 QSVPLSEEMLL-TIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSL 272
++ P++ ++L IA++ A + R +D ++ + Q+ G + +L
Sbjct: 188 RTAPVTGKVLRRHIADIDAGMPYDAALDRLGQRLGLDEGQDLAATIKQALFQGGELSTTL 247
Query: 273 RVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
R + +R+ A ++ P+LT+ MI+FF+PVL++V+ GPA++++
Sbjct: 248 RRFSVDLSDKRMGMAREQVGRKAPQLTLVMILFFMPVLLIVLAGPAVVTL 297
>gi|258515694|ref|YP_003191916.1| type II secretion system protein [Desulfotomaculum acetoxidans DSM
771]
gi|257779399|gb|ACV63293.1| type II secretion system protein [Desulfotomaculum acetoxidans DSM
771]
Length = 294
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 60/217 (27%), Positives = 100/217 (46%), Gaps = 16/217 (7%)
Query: 111 YSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISN 170
Y+L + L V V + GI + DK+L Y GA G + F P+ +I+
Sbjct: 93 YTLRLTLSVGAAV-----LTGIFYFPAIDKILLYG-----GAT---GGLFFLLPTKYINM 139
Query: 171 LVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELS 230
++ RQ + D +DLL +++G+ + ++ RV + + G L+EE E+
Sbjct: 140 KIRARQKRAQLEILDFIDLLTNGIDAGLDLSTSIDRVTKHMPG---ILAEEFQYAFVEIE 196
Query: 231 FLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKK 290
R A +N R + V A+IQ++R G I L+ + + + A K
Sbjct: 197 LGRRRSEALKNMAQRLDIKDVNLLVDAIIQAERTGVPIAKVLKDQANRIKQDFRTNALKM 256
Query: 291 AASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
A + K+ PMI+F LP L +V++GP + I MK
Sbjct: 257 AQAASIKMLAPMILFILPALFIVVLGPPFIGIGQLMK 293
>gi|329905442|ref|ZP_08274132.1| Flp pilus assembly protein TadC [Oxalobacteraceae bacterium
IMCC9480]
gi|327547599|gb|EGF32397.1| Flp pilus assembly protein TadC [Oxalobacteraceae bacterium
IMCC9480]
Length = 312
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/236 (24%), Positives = 107/236 (45%), Gaps = 8/236 (3%)
Query: 95 DENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIF---GYDKLLEYPFQLRV- 150
D+ ++R AG + + L RL+ + L W+ + ++ PF +
Sbjct: 78 DDKSWLRIRRAGLDYMLTPSQFLAARLLCMCLAAAL-CCWLLNTLAHVRVGAEPFSMAAY 136
Query: 151 GAVILIGYV-GFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAE 209
G L G + G+ P +W+ + + RQ I ++ P LD++ +CVE+G+++ AL + +
Sbjct: 137 GQAALFGMLSGWFVPRLWLHDRIALRQREILKSLPFFLDIVTLCVEAGLNLQGALSQAVD 196
Query: 210 DIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIG 269
G +E + ++ R A R + + + ++IQ++ G ++G
Sbjct: 197 K--GPPGAFRDECQRVLRDVRAGKARAEALRAMAERLREPGITSFVTSVIQAESMGMNLG 254
Query: 270 DSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDT 325
LR + RSER AEKKA KL +P+I F P +V+ P ++ +
Sbjct: 255 PVLRAQADQRRSERFQRAEKKALEAPVKLLLPLIAFIFPCTFIVLFFPIVMQFLHA 310
>gi|330862289|emb|CBX72450.1| hypothetical protein YEW_HH31820 [Yersinia enterocolitica W22703]
Length = 203
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/174 (31%), Positives = 94/174 (54%), Gaps = 7/174 (4%)
Query: 152 AVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDI 211
+ILI + F P V + N+V KR S+ R+ P +D+ CV+SG++ID +L A+
Sbjct: 32 TIILIMTLYF--PKVIVKNIVAKRTKSLLRSLPFFIDITAACVQSGMTIDNSLSYSAKKF 89
Query: 212 GGQSVPLSEEMLLTI--AELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIG 269
+ LS ML AE++ L N F + T+++ +R AL S +G ++
Sbjct: 90 ELINADLSLIMLKVTRRAEINGLENAIKEFNQ--SSTELE-IRMFCSALQYSISFGATVY 146
Query: 270 DSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSII 323
+ L L + R +L+ E+K + L KLT+P+ +F L I+++I P++L +I
Sbjct: 147 EQLIKLSKDMREMQLLVTEEKISKLTAKLTIPLFLFILIPFIVLVISPSVLELI 200
>gi|319791197|ref|YP_004152837.1| type II secretion system f domain [Variovorax paradoxus EPS]
gi|315593660|gb|ADU34726.1| Type II secretion system F domain [Variovorax paradoxus EPS]
Length = 296
Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 55/229 (24%), Positives = 108/229 (47%), Gaps = 7/229 (3%)
Query: 101 KLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVG 160
+L+ AG + V+ V +I LG+ W G LL+ ++ + G
Sbjct: 75 QLQLAGLEFVLKAEEFIAVQCVSMLIVAALGL-WTAG---LLDATAGTKIWVTLASCVTG 130
Query: 161 FCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSE 220
+ P +W+ + ++R+ I R P LD++ +C ++G+S+ A+ + + G L +
Sbjct: 131 WLYPVMWMRDRRKRREKDILRTLPGYLDMITLCCQAGLSLTGAIAQAVQK--GPGGALGQ 188
Query: 221 EMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETR 280
E + E+ +R A +R +++ L Q++ G S+ D+L + + R
Sbjct: 189 EFDRMMREMRTGASRMDALNALADRLDNKHIKSLVSNLTQAESLGASLADTLSAISDQRR 248
Query: 281 SERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMKDH 329
+ER AEK A K+ P++IF PV ++I P ++ ++T ++H
Sbjct: 249 TERFQMAEKLAMEAPVKMIGPLVIFIFPVTFIIIFFPLVMQFLET-QNH 296
>gi|163856391|ref|YP_001630689.1| hypothetical protein Bpet2080 [Bordetella petrii DSM 12804]
gi|163260119|emb|CAP42420.1| putative membrane protein [Bordetella petrii]
Length = 290
Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 53/186 (28%), Positives = 90/186 (48%), Gaps = 9/186 (4%)
Query: 132 IIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLL 191
+ W G + +P GA+ + G+ P W S + +R+ I R P LD++
Sbjct: 104 LAWWLG--TAVAWPAAGLAGALFMGGW-----PVAWASRRIGRRRQRIGRELPFVLDMMT 156
Query: 192 ICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCV 251
+C+ESG+ + AL++ A+ G PL +E+ +A++ R A + +R V
Sbjct: 157 LCIESGLGLHGALQQAAQH--GPPGPLRQELHHALADMRAGMPRAAALKALADRADSPAV 214
Query: 252 RNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLI 311
R+ AL Q+D G S+G LR ++ R++R AEK A K+ +P+I P
Sbjct: 215 RSWIAALTQADSLGMSLGAVLRGHAAQCRTDRFQRAEKLAMEAPVKMLLPLIGCIFPCTF 274
Query: 312 LVIIGP 317
+V+ P
Sbjct: 275 IVLAFP 280
>gi|319943385|ref|ZP_08017667.1| type II secretion system protein [Lautropia mirabilis ATCC 51599]
gi|319743200|gb|EFV95605.1| type II secretion system protein [Lautropia mirabilis ATCC 51599]
Length = 298
Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 84/166 (50%), Gaps = 2/166 (1%)
Query: 159 VGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPL 218
VG P W+ +L +R I +A P LD++ + +E+G ++ AL+ + G + P+
Sbjct: 131 VGAFLPVSWLRDLGARRTRQIAKALPFYLDIITLAIEAGSNMTGALQHAVDK--GPTGPM 188
Query: 219 SEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSE 278
SEE+ + ++ R + R ++ + N A++ +++ G+S+G LR +
Sbjct: 189 SEELRRVLRDIRAGRTRAESLRALAERLRIPAISNWVAAILTAEKQGSSLGPILRAQADQ 248
Query: 279 TRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIID 324
R+ER M+AE A K+ P++I P +++ P + I++
Sbjct: 249 RRNERFMQAEAMALKAPVKMLFPLMICIFPCTFIIVFFPIAIRIME 294
>gi|52425830|ref|YP_088967.1| hypothetical protein MS1775 [Mannheimia succiniciproducens MBEL55E]
gi|52307882|gb|AAU38382.1| unknown [Mannheimia succiniciproducens MBEL55E]
Length = 292
Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 59/200 (29%), Positives = 104/200 (52%), Gaps = 9/200 (4%)
Query: 125 IIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWP 184
I ++ GI +F D E GAVI + + P + +++++ ++ P
Sbjct: 96 ITLILTGIYALFNLDA--ERKSLAIAGAVIFVLVI--LIPGSLANMILKRKIKNMMTDLP 151
Query: 185 DALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTI--AELSFLPNRQVAFENF 242
+DL+ ICV++G++I+ AL RVAED + LS ML I AE+ LP+ A +
Sbjct: 152 GFVDLVAICVQTGMTINAALLRVAEDFKILNPDLSYVMLRIIRKAEIIGLPS---ALDTL 208
Query: 243 YNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPM 302
+R T L QS +G+SI L L S+ R +L+ E++ +L K++VP+
Sbjct: 209 AVSLPTREIRMFTTVLQQSLNFGSSIYSHLLQLSSDMRELQLLTIEEQLGTLSAKMSVPL 268
Query: 303 IIFFLPVLILVIIGPAILSI 322
I+F + +I++I+ P ++ +
Sbjct: 269 ILFIMFPIIILIVAPGVMRV 288
>gi|254506088|ref|ZP_05118232.1| bipartite nuclear localization signal containing protein [Vibrio
parahaemolyticus 16]
gi|219550906|gb|EED27887.1| bipartite nuclear localization signal containing protein [Vibrio
parahaemolyticus 16]
Length = 248
Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 60/235 (25%), Positives = 114/235 (48%), Gaps = 12/235 (5%)
Query: 95 DENIVNKLRAAGFRSEYSLNILLVVRLVVPIIF--LILGI--IWIFGYDKLLEYPFQLRV 150
++ I +K + AG S+ V L +P+ + L+LG I+I+ + P +
Sbjct: 21 NQEINDKFKRAGISSKSKW-----VALYMPLKYGALMLGCAAIYIYSIKSAISTPTLIAF 75
Query: 151 GAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAED 210
A LI + P + + R S + P LDLL +CV++G++I+ A+ ++++
Sbjct: 76 MATWLI--ICIVVPDALLDGRGKARVSRVSGQLPYLLDLLAVCVQTGMTIESAMNYLSKE 133
Query: 211 IGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGD 270
+ G L+ +L + + L Q A + Y +R+ L QS +YG+SI
Sbjct: 134 MVGFDKELAG-LLKKTNDRARLVGMQKALDELYEDIPSSEMRSFVMTLKQSLQYGSSIYG 192
Query: 271 SLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDT 325
L L + R +++ E+K L K++VP+I+F + ++++I P IL ++
Sbjct: 193 VLTTLAGDIRDVQMLTLEEKIGKLAAKMSVPLILFIMMPIVILIAAPGILRMMSN 247
>gi|311105395|ref|YP_003978248.1| type II secretion system protein F domain-containing protein 2
[Achromobacter xylosoxidans A8]
gi|310760084|gb|ADP15533.1| bacterial type II secretion system protein F domain protein 2
[Achromobacter xylosoxidans A8]
Length = 290
Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 89/165 (53%), Gaps = 2/165 (1%)
Query: 163 APSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEM 222
AP +W+ +L KR+ SI+R P D++ +CVE+G+S+ AL+ A+ G + L + +
Sbjct: 128 APGLWLRSLSVKRRRSIERDLPFVFDMMTLCVEAGLSVHGALQMAAQS--GPAGILRDAL 185
Query: 223 LLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSE 282
+AE+ +R A + R+ RN AL Q++ G S+G LR +++RS+
Sbjct: 186 ADALAEMRAGVSRTAAIKALAERSNSPLARNWAAALAQAEALGISLGPVLRAQAAQSRSD 245
Query: 283 RLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
R + AE+ A K+ +P+I P +V+ P ++ ++ + +
Sbjct: 246 RHVRAEQLAMQAPVKMLLPLIGCIFPCTFIVLAFPVMVQLLQSAQ 290
>gi|237653361|ref|YP_002889675.1| type II secretion system protein [Thauera sp. MZ1T]
gi|237624608|gb|ACR01298.1| type II secretion system protein [Thauera sp. MZ1T]
Length = 301
Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 77/151 (50%), Gaps = 2/151 (1%)
Query: 167 WISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTI 226
W+ + ++ R+ + + P LDL+ +CVE+G+++ AL++ A G + PL EE+ +
Sbjct: 143 WLDDRIRCRRRLMLKQLPFVLDLITLCVEAGLNLTGALQQAAAK--GPAGPLGEELHRVL 200
Query: 227 AELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLME 286
++ +R A F +R + N +IQ++ G S+G LR + R+ER
Sbjct: 201 RDVRAGKSRADALRGFADRIGEPAIANLVSTVIQAENMGMSLGPMLRAQGEQRRAERFAR 260
Query: 287 AEKKAASLGPKLTVPMIIFFLPVLILVIIGP 317
AEK A K+ +P+I P +V+ P
Sbjct: 261 AEKAAMEAPVKMLLPLIACIFPCTFIVLGFP 291
>gi|156744077|ref|YP_001434206.1| type II secretion system protein [Roseiflexus castenholzii DSM
13941]
gi|156235405|gb|ABU60188.1| type II secretion system protein [Roseiflexus castenholzii DSM
13941]
Length = 309
Score = 73.2 bits (178), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 91/176 (51%), Gaps = 6/176 (3%)
Query: 153 VILIGYVGFCA---PSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAE 209
++L+G + CA P VW+S + +RQ+ + A PDALDLL I +G+S + A++ +
Sbjct: 133 ILLLGGIALCAFFLPDVWLSRRIGQRQTELLNALPDALDLLAIATAAGLSFENAIQEITS 192
Query: 210 DIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIG 269
+ L+ E + ++S R+ A + RT + + + A+ Q++ G SIG
Sbjct: 193 KWTNE---LAREFSRVLRDMSMGVPRRQALTDMAERTGVPDIASFVSAIKQAEALGVSIG 249
Query: 270 DSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDT 325
L V E R+ R A+++A K+ P++ P + V++GPA+ +++
Sbjct: 250 RVLTVQAEEMRTRRRQRAQERANQAPVKMMFPLVFLIFPAIFAVLLGPAVPQLLEA 305
>gi|297581613|ref|ZP_06943535.1| flp pilus assembly protein TadC [Vibrio cholerae RC385]
gi|297534020|gb|EFH72859.1| flp pilus assembly protein TadC [Vibrio cholerae RC385]
Length = 305
Score = 73.2 bits (178), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 95/177 (53%), Gaps = 7/177 (3%)
Query: 155 LIGYV-GFCAPSVWI---SNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAED 210
L+GYV G P + S ++RQ I DA+DL++I +E+G+S+D+AL RV
Sbjct: 132 LVGYVLGSNLPEYGLRRQSKQAKQRQQQIV---ADAMDLMVISIEAGLSLDRALERVGHY 188
Query: 211 IGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGD 270
+ L+++ L T AE+ L + + + RT + + L + RYG+ + +
Sbjct: 189 LLDVEPMLAKQFLRTHAEIQVLGDTALCMKKLAWRTGLQELERCAATLAMAQRYGSPLAE 248
Query: 271 SLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
++R + + R R M +++A L ++T+ + F + L+++II P + ++++++
Sbjct: 249 TMRNISQDARQMRKMALQEQAGKLPGRITLIQMAFIMLPLLVLIIAPTLNVLLESLR 305
>gi|319788658|ref|YP_004148133.1| type II secretion system F domain [Pseudoxanthomonas suwonensis
11-1]
gi|317467170|gb|ADV28902.1| Type II secretion system F domain [Pseudoxanthomonas suwonensis
11-1]
Length = 296
Score = 72.8 bits (177), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 57/231 (24%), Positives = 109/231 (47%), Gaps = 22/231 (9%)
Query: 81 RNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNI-----LLVVRLVVPIIFLILGIIWI 135
R +LN+ + E +L+AAG +Y+L L +V I+F +L ++ +
Sbjct: 57 RRLAPRLNVSQL---EQTHRQLQAAG--QDYTLTPEEFYGLRAASAIVVILFFLLCVLML 111
Query: 136 --FGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLIC 193
G +L V+ G +G+ P++W+ + R ++ R P LD + +
Sbjct: 112 GKLGPSSVL--------ACVMFGGVLGWLYPALWLGERRKLRHKAVVRDLPVYLDFITMS 163
Query: 194 VESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRN 253
VE+G+++ + + G + LS+E + ++ R A + R + + N
Sbjct: 164 VEAGLNVTGGIEQAVAK--GPAGALSQEFSRMLRDIRAGLPRAEALKRMSERMDISQITN 221
Query: 254 ATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMII 304
T ALIQ+D+ G ++ D+LR ++ R ER + AEK A K+ +P+++
Sbjct: 222 FTSALIQADKVGANLSDTLRAQANQRREERFLRAEKLALEAPVKMMLPLVM 272
>gi|123443825|ref|YP_001007796.1| putative tight adherance operon protein [Yersinia enterocolitica
subsp. enterocolitica 8081]
gi|122090786|emb|CAL13668.1| putative tight adherance operon protein [Yersinia enterocolitica
subsp. enterocolitica 8081]
Length = 274
Score = 72.4 bits (176), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 53/174 (30%), Positives = 93/174 (53%), Gaps = 7/174 (4%)
Query: 152 AVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDI 211
+ILI + F P V + N+V +R S+ R+ P +D+ CV+SG++ID +L A+
Sbjct: 103 TIILIMTLYF--PKVIVKNIVARRTQSLLRSLPFFIDITAACVQSGMTIDNSLSYSAKKF 160
Query: 212 GGQSVPLSEEMLLTI--AELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIG 269
+ LS ML AE++ L N F + T+++ +R AL S +G ++
Sbjct: 161 ELINADLSLIMLKVTKRAEINGLENAIKEFNQ--SSTELE-IRMFCSALQYSISFGATVY 217
Query: 270 DSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSII 323
+ L L + R +L+ E+K + L KLT+P+ +F L +++++ P IL +I
Sbjct: 218 EQLIKLSKDMREMQLLVTEEKISKLTAKLTIPLFLFILIPFVVLVVSPGILELI 271
>gi|328884729|emb|CCA57968.1| putative integral membrane protein [Streptomyces venezuelae ATCC
10712]
Length = 295
Score = 72.4 bits (176), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 48/163 (29%), Positives = 83/163 (50%), Gaps = 4/163 (2%)
Query: 152 AVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDI 211
AV+L + F V I + V+ R+ I+R PD LD+L + V +G+ QAL RVAE
Sbjct: 119 AVLLFAFGAFWT-EVGIWSAVRIRKDQIERTLPDFLDVLAVVVSAGLGFRQALERVAEKY 177
Query: 212 GGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDS 271
G P ++E+ +T+ ++ +R+ AF+ R + V AL Q + G I ++
Sbjct: 178 EG---PWADELRITLRQMDMGVSRRQAFDELRRRNDSEQVAQFVTALQQGEELGAPIVET 234
Query: 272 LRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVI 314
L + ++ R A +KAA PK T+ + +P ++++
Sbjct: 235 LIQIANDMRRTDAQNARRKAAKAVPKATMVITTLMVPATMILL 277
>gi|149178503|ref|ZP_01857091.1| type II secretion system protein [Planctomyces maris DSM 8797]
gi|148842618|gb|EDL56993.1| type II secretion system protein [Planctomyces maris DSM 8797]
Length = 334
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/222 (23%), Positives = 106/222 (47%), Gaps = 7/222 (3%)
Query: 103 RAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFC 162
RA +RS + L ++V ++ + G+ + D P ++ + A +LI G+
Sbjct: 79 RAGYYRSTALVEYLATRNMLVVLVLIGTGVGCVLA-DPGSNLP-EIILIAGLLIAGAGYG 136
Query: 163 APSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDI--GGQSVPLSE 220
P + + N +R I+R PDALDL+++C+ G+ + AL RV +++ + +
Sbjct: 137 LPRIVLQNQANRRVHRIQRGLPDALDLVMMCLTGGVPLRTALERVTDEVRFSHPDIAVEF 196
Query: 221 EMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETR 280
E++ A+ + + + A + F R V + + Q++R GT++ +L R
Sbjct: 197 EIIRRHADANSMAD---ALKQFAKRIDAPDVNALSLMISQTERLGTNVSTALIDFADGVR 253
Query: 281 SERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
+ AE+ ++ KL P+I P + ++ GPA+L +
Sbjct: 254 RKYRQRAEENSSKTSIKLLFPIIFCMAPPIYILFFGPAVLEL 295
>gi|87308908|ref|ZP_01091046.1| bacterial type II secretion system protein [Blastopirellula marina
DSM 3645]
gi|87288251|gb|EAQ80147.1| bacterial type II secretion system protein [Blastopirellula marina
DSM 3645]
Length = 321
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 85/168 (50%), Gaps = 5/168 (2%)
Query: 161 FCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSE 220
F P V IS+ R S I+ A PDALD++ + +G+ + ++++RV++++ L+
Sbjct: 132 FAIPRVIISSQAAARVSRIQHALPDALDMITMTTTAGLPLQKSIKRVSDEMVRSHEDLAC 191
Query: 221 EMLL--TIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSE 278
E+++ AE L A +NF R ++ V + Q+ R G S+ + R
Sbjct: 192 ELMILDRQAETGSLGQ---AIQNFAKRLEVPEVNALASLVTQAQRIGGSVAGAFRDFADS 248
Query: 279 TRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
R R AE++ KL +P+I P + ++++GP++L + D M
Sbjct: 249 IRRSRRQLAEERGNQNSIKLLIPVIFLLAPPVYILLLGPSVLRLQDFM 296
>gi|72162675|ref|YP_290332.1| integral membrane protein [Thermobifida fusca YX]
gi|71916407|gb|AAZ56309.1| putative integral membrane protein [Thermobifida fusca YX]
Length = 273
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 75/149 (50%), Gaps = 3/149 (2%)
Query: 173 QKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFL 232
+KRQ I++ PD LD+L + V +G+S QAL RVA+ + G L+ E L + ++
Sbjct: 118 RKRQEEIQKQLPDFLDVLAVTVSAGLSFRQALARVADAMPG---VLASEFQLALRQMELG 174
Query: 233 PNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAA 292
+R+ AF R + + AL Q++ G + +L L ++ R E +KA
Sbjct: 175 TSRRDAFAALRERNSNEALGRFITALQQAEELGAPLSQTLHALSTDMRREDAQFLRRKAQ 234
Query: 293 SLGPKLTVPMIIFFLPVLILVIIGPAILS 321
L P++T LP L+L+I G +L
Sbjct: 235 HLNPRVTAVTAATMLPGLLLIIGGGMLLG 263
>gi|238759125|ref|ZP_04620294.1| Type II secretion system protein [Yersinia aldovae ATCC 35236]
gi|238702673|gb|EEP95221.1| Type II secretion system protein [Yersinia aldovae ATCC 35236]
Length = 273
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 93/173 (53%), Gaps = 7/173 (4%)
Query: 153 VILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIG 212
++LI + F P V I N+V K+ ++ ++ P +D+ CV+SG++ID +L A+
Sbjct: 100 IMLIVVIYF--PRVIIRNIVSKKIRTLLQSLPFFIDITAACVQSGMTIDSSLSYTAKKFK 157
Query: 213 GQSVPLSEEMLLTI--AELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGD 270
+ LS ML AE++ L N F+ + T+ ++ AL S +G+++ D
Sbjct: 158 LINADLSLIMLKITKRAEINGLENAIKEFQQYSTETE---IKMFCSALQYSIIFGSTVYD 214
Query: 271 SLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSII 323
L L + R +L+ E+K + L KLT+P+ +F L + ++I P++L ++
Sbjct: 215 QLIKLSQDMREMQLLVTEEKNSKLSSKLTLPLFVFILIPFVALVISPSVLELL 267
>gi|300856045|ref|YP_003781029.1| putative type II secretion system protein [Clostridium ljungdahlii
DSM 13528]
gi|300436160|gb|ADK15927.1| putative type II secretion system protein [Clostridium ljungdahlii
DSM 13528]
Length = 306
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/157 (29%), Positives = 85/157 (54%), Gaps = 3/157 (1%)
Query: 167 WISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTI 226
++S +Q R++ I + P LDL+ + VE+G+S D A+ RV +I G+ L +E ++
Sbjct: 147 YLSRRIQNRKNKILKDLPYTLDLITVSVEAGLSFDGAIARVISNIRGE---LCDEFAKSL 203
Query: 227 AELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLME 286
E++ R+ A +N R + + +LIQ+D G S+ LR+ + R R
Sbjct: 204 KEITMGIERKAALKNMSERCDVKELSMFISSLIQADELGVSLSKVLRIESANLREHRRQV 263
Query: 287 AEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSII 323
+ +KA K+ P+I F P + ++I+GPA++ +I
Sbjct: 264 SREKAMKAPIKMLFPLIFFIFPTIFIIILGPAVIRMI 300
>gi|209809175|ref|YP_002264713.1| bacterial type II secretion system protein F [Aliivibrio
salmonicida LFI1238]
gi|208010737|emb|CAQ81128.1| bacterial type II secretion system protein F [Aliivibrio
salmonicida LFI1238]
Length = 292
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 87/160 (54%), Gaps = 1/160 (0%)
Query: 164 PSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEML 223
P + +++ ++ + + P LDLL +CV +G++I+ ++ +A+++ G L+ M+
Sbjct: 130 PDLILNSRIKTLRDKLSSQLPYLLDLLAMCVHTGMTIESSMAYLAKEMRGFDKDLAH-MV 188
Query: 224 LTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSER 283
+ + + VA + Y + + +R+ L QS YG+SI L L + R+ R
Sbjct: 189 SRTNDRARIVGLSVALDELYIKVPTNEMRSFVMTLKQSLHYGSSIYGILNTLAEDIRNVR 248
Query: 284 LMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSII 323
L+ E+K L K++VP+I+F + ++++I P I+ ++
Sbjct: 249 LLSLEEKVGKLAAKMSVPLILFIMIPVVILIAAPGIMRMM 288
>gi|226325183|ref|ZP_03800701.1| hypothetical protein COPCOM_02975 [Coprococcus comes ATCC 27758]
gi|225206531|gb|EEG88885.1| hypothetical protein COPCOM_02975 [Coprococcus comes ATCC 27758]
Length = 303
Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 60/218 (27%), Positives = 101/218 (46%), Gaps = 13/218 (5%)
Query: 100 NKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYV 159
+KL AG + S + + + + ++ G + GY L VG + +G
Sbjct: 81 DKLDLAGLKITPSTWRAISLGITIFTAIMLAGAALVGGYG----IAMALLVGIIGAVGGW 136
Query: 160 GFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAED--IGGQSVP 217
C VW+S+ + R I R P AL+LL I V +G+ +++ R++AE+ +G P
Sbjct: 137 AVC--GVWLSHAGKTRGEEIDRYLPPALELLTISVSAGVLVERGFRQLAENKALG----P 190
Query: 218 LSEEMLLTIAELSFLPNRQV-AFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLV 276
L++E T E+S L +V A ++ R + ALI++ R GTSI L
Sbjct: 191 LADEFARTDMEISHLGVSRVDALDHMRRRCDSPLMGYFCAALIEATRKGTSISGVLESQA 250
Query: 277 SETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVI 314
R R + L K+ VP++ F + VL+L++
Sbjct: 251 KLARKARYDALTAQINKLSTKMAVPLVFFLIAVLVLIL 288
>gi|290957844|ref|YP_003489026.1| type II secretion system F protein [Streptomyces scabiei 87.22]
gi|260647370|emb|CBG70475.1| putative type II secretion system F protein [Streptomyces scabiei
87.22]
Length = 300
Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 48/155 (30%), Positives = 80/155 (51%), Gaps = 3/155 (1%)
Query: 160 GFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLS 219
G A I V++R+ I R PD LD+L + V +G+ QAL RVAE G P +
Sbjct: 131 GLLAADAAIWQAVRERKDVIDRTLPDFLDVLAVVVSAGLGFRQALDRVAEKYEG---PWA 187
Query: 220 EEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSET 279
+E+ +T+ ++ +R+ AF+ R + V AL Q + G+ I ++L L ++
Sbjct: 188 DELRITLRQMDMGVSRRQAFDELRRRNTSEQVAQFVSALQQGEELGSPIAETLIQLAADM 247
Query: 280 RSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVI 314
R A ++AA PK T+ ++F LP +++I
Sbjct: 248 RRTDAQNARRRAARTIPKATLVTLVFMLPATMILI 282
>gi|269105136|ref|ZP_06157830.1| type II/IV secretion system protein TadC associated with Flp pilus
assembly [Photobacterium damselae subsp. damselae CIP
102761]
gi|268160586|gb|EEZ39085.1| type II/IV secretion system protein TadC associated with Flp pilus
assembly [Photobacterium damselae subsp. damselae CIP
102761]
Length = 293
Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 57/235 (24%), Positives = 118/235 (50%), Gaps = 20/235 (8%)
Query: 96 ENIVNKLRAAGFRS-EYSLNILLVVRLVVPIIFLIL----GIIWIFGYDKLLEYPFQLRV 150
+ I K +AGF +Y+ L +PI +L++ G I+ F + + P + +
Sbjct: 69 KEIDKKFYSAGFYDFKYA-------YLYMPIKYLLVLIGSGSIYWFS-KGIFDNPTMMAI 120
Query: 151 GAVILIGYVGFC--APSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVA 208
V +V C P + ++ + + I P LDLL +CV++G++I+ ++ ++
Sbjct: 121 ICV----WVVLCISMPDIVLAQKSKTLRHKISGQLPYLLDLLAMCVQTGMTIESSMSYLS 176
Query: 209 EDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSI 268
++ G LS +L + + + + A + Y R + +R+ + QS +YG+SI
Sbjct: 177 REMKGFDRDLSH-LLTRTNDRARIIGLEQALDELYIRVPTNEMRSFVMTIKQSLQYGSSI 235
Query: 269 GDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSII 323
+ L L ++ R R++ E+K L K+++P+I+F L ++++I P +L ++
Sbjct: 236 YNILTTLAADIRDMRMLTLEEKIGKLAAKMSIPLILFILIPIVILIAAPGVLRML 290
>gi|312621086|ref|YP_003993814.1| type ii/iv secretion system protein tadc,associated with flp pilus
assembly [Photobacterium damselae subsp. damselae]
gi|311872807|emb|CBX86898.1| Type II/IV secretion system protein TadC,associated with Flp pilus
assembly [Photobacterium damselae subsp. damselae]
Length = 303
Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 57/235 (24%), Positives = 118/235 (50%), Gaps = 20/235 (8%)
Query: 96 ENIVNKLRAAGFRS-EYSLNILLVVRLVVPIIFLIL----GIIWIFGYDKLLEYPFQLRV 150
+ I K +AGF +Y+ L +PI +L++ G I+ F + + P + +
Sbjct: 79 KEIDKKFYSAGFYDFKYA-------YLYMPIKYLLVLIGSGSIYWFS-KGIFDNPTMMAI 130
Query: 151 GAVILIGYVGFC--APSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVA 208
V +V C P + ++ + + I P LDLL +CV++G++I+ ++ ++
Sbjct: 131 ICV----WVVLCISMPDIVLAQKSKTLRHKISGQLPYLLDLLAMCVQTGMTIESSMSYLS 186
Query: 209 EDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSI 268
++ G LS +L + + + + A + Y R + +R+ + QS +YG+SI
Sbjct: 187 REMKGFDRDLSH-LLTRTNDRARIIGLEQALDELYIRVPTNEMRSFVMTIKQSLQYGSSI 245
Query: 269 GDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSII 323
+ L L ++ R R++ E+K L K+++P+I+F L ++++I P +L ++
Sbjct: 246 YNILTTLAADIRDMRMLTLEEKIGKLAAKMSIPLILFILIPIVILIAAPGVLRML 300
>gi|317491688|ref|ZP_07950123.1| type II secretion system protein [Enterobacteriaceae bacterium
9_2_54FAA]
gi|316920122|gb|EFV41446.1| type II secretion system protein [Enterobacteriaceae bacterium
9_2_54FAA]
Length = 279
Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 53/204 (25%), Positives = 103/204 (50%), Gaps = 15/204 (7%)
Query: 126 IFLILGIIWIFGYDKLLEYPFQLRVGAVIL--IGYVGFCAPSVWISNLVQKRQSSIKRAW 183
+ L+L I+ IF ++ A+I+ I + P++ ++ + R + A
Sbjct: 84 VLLVLNIVGIFS--------ISMKALAMIMLFIFMIVLVLPAMMLNPAINTRIKLMLDAL 135
Query: 184 PDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTI--AELSFLPNRQVAFEN 241
P +DL+ +CV++G++++ +++ +AE L++ ML + AE+S L +
Sbjct: 136 PYFVDLIAVCVQAGMTVESSVKFIAERSADLDKNLADLMLHLVKRAEVSGLEE---GLMD 192
Query: 242 FYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVP 301
Y M +R L QS YGTS+ ++L L + R +L+ +E+K L K++VP
Sbjct: 193 LYRSMDMTEMRMFCATLQQSVHYGTSLYENLMELSKDIRDMQLLNSEEKIGKLSAKMSVP 252
Query: 302 MIIFFLPVLILVIIGPAILSIIDT 325
+I+F + + ++I P IL I+
Sbjct: 253 LILFIMFPITILIAAPGILRIMQN 276
>gi|323495642|ref|ZP_08100713.1| type II secretion system protein F [Vibrio sinaloensis DSM 21326]
gi|323319277|gb|EGA72217.1| type II secretion system protein F [Vibrio sinaloensis DSM 21326]
Length = 296
Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 84/162 (51%), Gaps = 1/162 (0%)
Query: 164 PSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEML 223
P + + + R + I P LDLL +CV++G++I+ A+ +++++ G L+ +L
Sbjct: 135 PDAILDSRGKARIARISAQLPYLLDLLAVCVQTGMTIESAMNYLSKEMIGFDKELAG-LL 193
Query: 224 LTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSER 283
E S L Q A + Y +R+ L QS +YG+SI L L + R +
Sbjct: 194 KKTNERSRLVGMQKALDELYEDIPSSEMRSFVMTLKQSLQYGSSIYGVLTTLAGDIRDVQ 253
Query: 284 LMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDT 325
++ E+K L K++VP+I+F + ++++I P IL ++
Sbjct: 254 MLGLEEKIGKLAAKMSVPLILFIMIPIVILIAAPGILRMMSN 295
>gi|254252516|ref|ZP_04945834.1| Flp pilus assembly protein TadC [Burkholderia dolosa AUO158]
gi|124895125|gb|EAY69005.1| Flp pilus assembly protein TadC [Burkholderia dolosa AUO158]
Length = 333
Score = 69.7 bits (169), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 60/277 (21%), Positives = 119/277 (42%), Gaps = 35/277 (12%)
Query: 73 RTRDSKSLRNFVKKLNLKAI----------LVDENIVNKLRAAGFRSEYSLNILLVVRLV 122
RTR + + F+++L+ + +V + L G+ + + L R+V
Sbjct: 71 RTRGGQRVARFLERLSAAGMRWLDTGFGQYVVAQEDRRLLEQCGYIDARTRGLFLSARIV 130
Query: 123 ----VPIIFLIL------GIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLV 172
+P++F I+ G +W+ G L F L GF P ++
Sbjct: 131 CGIALPLLFAIVASGRMKGSLWLIG----LFAAFGL-----------GFMLPKFYVKRRA 175
Query: 173 QKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFL 232
R+ S+ P +D+L + G+S+DQ+L+ V D G LS E+ + + +
Sbjct: 176 AARRQSVVDELPLLVDMLRLLQGVGLSLDQSLQVVTNDFRGMLPVLSSEVGIAQRQFAAG 235
Query: 233 PNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAA 292
R+ + + + +R + +IQ D++G ++ + L+ R R ++
Sbjct: 236 RTREQSLQRLSGGFDNEDLRAVVRLMIQVDKHGGAVQEPLKQFGDRLRETRRAMLRERIG 295
Query: 293 SLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMKDH 329
L K+T M++ LP L++V GP +L+++ + H
Sbjct: 296 RLTVKMTGVMVLTLLPALLIVTAGPGMLAVMHALSAH 332
>gi|294631144|ref|ZP_06709704.1| integral membrane protein [Streptomyces sp. e14]
gi|292834477|gb|EFF92826.1| integral membrane protein [Streptomyces sp. e14]
Length = 295
Score = 69.7 bits (169), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 83/169 (49%), Gaps = 8/169 (4%)
Query: 161 FCAPSVW----ISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSV 216
F ++W I + ++ R+ I+R PD LD+L + V +G+ QAL RVA G
Sbjct: 123 FAFGALWTEVGIWSAIRIRKDVIERTLPDFLDVLAVVVSAGLGFRQALDRVAARYEG--- 179
Query: 217 PLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLV 276
P ++E+ +T+ ++ +R+ AF R + V AL Q + G I D+L L
Sbjct: 180 PWADELRITLRQMDLGMSRRQAFAELRRRNDSEQVAMFVTALQQGEELGAPIVDTLVSLA 239
Query: 277 SETRSERLMEAEKKAASLGPKLTVPMIIFFLP-VLILVIIGPAILSIID 324
+ R A +KAA PK T+ + F +P +IL+ G + S +D
Sbjct: 240 KDMRRTDAQNARRKAARAVPKATMMITTFMVPATMILLATGLLLGSGVD 288
>gi|238782877|ref|ZP_04626906.1| Type II secretion system protein [Yersinia bercovieri ATCC 43970]
gi|238716300|gb|EEQ08283.1| Type II secretion system protein [Yersinia bercovieri ATCC 43970]
Length = 264
Score = 69.7 bits (169), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 95/180 (52%), Gaps = 5/180 (2%)
Query: 148 LRVGAVILIGYVGFCA----PSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQA 203
+ + ++I IG++ A P V I ++ +R SI ++ P +D+ CV+SG++ID +
Sbjct: 80 INLNSLIGIGFITILATLYLPKVMIKKIIARRVESILKSLPFFIDITAACVQSGMTIDSS 139
Query: 204 LRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDR 263
L A + LS ++L +A+ + + + A + + + ++ L S
Sbjct: 140 LSYAARKFELINPDLSL-IILKMAKRAEINGLESAIKELHQCSTATEIKMFCSTLQYSIS 198
Query: 264 YGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSII 323
+G+++ D L L + R +L+ E+K + L KLT+P+ IF L ++++I P++L +I
Sbjct: 199 FGSTVYDQLIKLSQDIREMQLLVTEEKISKLSTKLTLPLFIFILIPFVVLVISPSVLELI 258
>gi|238762413|ref|ZP_04623384.1| Type II secretion system protein [Yersinia kristensenii ATCC 33638]
gi|238699398|gb|EEP92144.1| Type II secretion system protein [Yersinia kristensenii ATCC 33638]
Length = 272
Score = 69.7 bits (169), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 93/178 (52%), Gaps = 7/178 (3%)
Query: 148 LRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRV 207
L VG ++LI + P + N++ R S+ ++ P +D+ CV+SG++ID +L
Sbjct: 97 LIVGVIMLIMMLYL--PKYIVKNIITSRNKSLLKSLPFFIDITAACVQSGMTIDSSLSYT 154
Query: 208 AEDIGGQSVPLSEEMLLTI--AELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYG 265
A+ + LS ML AE++ L + A + F+ + +R AL S +G
Sbjct: 155 AKKFELINADLSLIMLKVTRRAEINGL---ESAIKEFHQSSTELEIRMFCSALQYSISFG 211
Query: 266 TSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSII 323
++ + L L + R +L+ E+K + L KLT+P+ +F L I+++I P++L ++
Sbjct: 212 ATVYEQLIKLSQDMREMQLLVTEEKISKLTAKLTIPLFLFILIPFIILVISPSVLELL 269
>gi|307332439|ref|ZP_07611503.1| Type II secretion system F domain protein [Streptomyces
violaceusniger Tu 4113]
gi|306881908|gb|EFN13030.1| Type II secretion system F domain protein [Streptomyces
violaceusniger Tu 4113]
Length = 295
Score = 69.3 bits (168), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 86/161 (53%), Gaps = 6/161 (3%)
Query: 165 SVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLL 224
+W + V++R+ +I+R PD LD+L + V +G+S QAL RVAE G P ++E+ +
Sbjct: 133 GIWAA--VRERKDAIERTLPDFLDVLAVVVSAGLSFRQALDRVAEKYEG---PWADELRI 187
Query: 225 TIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERL 284
T+ ++ +R+ AFE R + V AL Q + G I ++L + ++ R
Sbjct: 188 TLRQMDMGVSRRHAFEELRKRNDSEQVAQFVTALQQGEELGAPIVETLIAIANDMRRTDA 247
Query: 285 MEAEKKAASLGPKLTVPMIIFFLP-VLILVIIGPAILSIID 324
A ++AA PK T+ + F +P ++L++ G I S D
Sbjct: 248 QNARRRAARAVPKATMVITTFMVPGTMVLLVAGFFIGSGTD 288
>gi|171321820|ref|ZP_02910723.1| type II secretion system protein [Burkholderia ambifaria MEX-5]
gi|171092891|gb|EDT38141.1| type II secretion system protein [Burkholderia ambifaria MEX-5]
Length = 330
Score = 69.3 bits (168), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 58/252 (23%), Positives = 113/252 (44%), Gaps = 30/252 (11%)
Query: 90 KAILVDENIVNKLRAAGFRSEYSLNILLVVR----LVVPIIFLIL------GIIWIFGYD 139
K I+ DE+ L G+ + + L R LV+P++F + G W+
Sbjct: 96 KHIVADED-RRLLEQCGYVDARTRGLFLSARIACGLVLPLLFALFASGRLKGSHWV---- 150
Query: 140 KLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGIS 199
+G ++ G +GF P +++ R+ S+ P +D+L + G+S
Sbjct: 151 ----------IGMFVVFG-LGFMLPKLYVKRRAAARRQSVVDELPLFVDMLRLLQGVGLS 199
Query: 200 IDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNR--QVAFENFYNRTQMDCVRNATQA 257
+DQ+L+ V D G LS E + IA+ F+ R + + + + +R +
Sbjct: 200 LDQSLQVVTNDFRGMMPVLSSE--VGIAQRHFVAGRTREQSMQRLSGGFDNEDLRAIVRL 257
Query: 258 LIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGP 317
++Q D++G ++ + L+ R R ++ L K+T M++ LP L++V GP
Sbjct: 258 MVQVDKHGGAVQEPLKQFGDRLRETRRAMLRERIGRLTVKMTGVMVLTLLPALLIVTAGP 317
Query: 318 AILSIIDTMKDH 329
+L+++ + H
Sbjct: 318 GMLAVMRALSHH 329
>gi|317403410|gb|EFV83923.1| type II secretion system protein [Achromobacter xylosoxidans C54]
Length = 246
Score = 68.9 bits (167), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 51/164 (31%), Positives = 77/164 (46%), Gaps = 5/164 (3%)
Query: 157 GYVGFCA---PSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGG 213
G V F A P W+ + R+ I+R P LD++ +CVE+G+ AL+ A + G
Sbjct: 75 GAVAFTAALLPFAWLRAQGEARRRGIERGLPFMLDMMTLCVEAGLGAHAALQAAAAN--G 132
Query: 214 QSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLR 273
S PL + + +A++ R A + +R V AL +D G S+G LR
Sbjct: 133 PSGPLRDALAGALAQVRAGVPRVAAIQAMADRCGSPLVHRWATALAHADALGISLGPLLR 192
Query: 274 VLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGP 317
+ RSER M AE+ A K+ +P+I P LV+ P
Sbjct: 193 AQAAHCRSERHMRAERLAMQAPVKMLLPLIGCIFPCTFLVLAFP 236
>gi|25029119|ref|NP_739173.1| hypothetical protein CE2563 [Corynebacterium efficiens YS-314]
gi|259505885|ref|ZP_05748787.1| bacterial type II secretion system protein F domain protein
[Corynebacterium efficiens YS-314]
gi|23494406|dbj|BAC19373.1| hypothetical protein [Corynebacterium efficiens YS-314]
gi|259166559|gb|EEW51113.1| bacterial type II secretion system protein F domain protein
[Corynebacterium efficiens YS-314]
Length = 94
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 52/87 (59%)
Query: 239 FENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKL 298
+ RT + +R +A++Q+D YG SI D LR E R +R AE+KA L K+
Sbjct: 4 LDGLATRTTVPDLRRFVRAVVQADAYGISIADVLRTQADEMRLKRRQRAEEKAQKLPVKV 63
Query: 299 TVPMIIFFLPVLILVIIGPAILSIIDT 325
P+++ LPVL +V++GPA +SI+D
Sbjct: 64 LAPVMLCILPVLFIVVMGPAAMSIVDA 90
>gi|256785513|ref|ZP_05523944.1| integral membrane protein [Streptomyces lividans TK24]
Length = 300
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/170 (28%), Positives = 83/170 (48%), Gaps = 4/170 (2%)
Query: 152 AVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDI 211
A++L+ + F V I + ++ R+ I+R PD LD+L + V +G+ QAL RV+
Sbjct: 124 ALLLLAFGAFWT-EVGIWSAIRIRKDVIERTLPDFLDVLAVVVSAGLGFRQALDRVSTRY 182
Query: 212 GGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDS 271
G P ++E+ +T+ ++ R+ AF R + V AL Q + G I D+
Sbjct: 183 EG---PWADELRITLRQMDLGMGRREAFTELRRRNDSEQVAMFVTALQQGEELGAPIVDT 239
Query: 272 LRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILS 321
L L + R A +KAA PK T+ + F +P ++++ IL
Sbjct: 240 LVSLAKDMRRTDAQNARRKAARAVPKATLMITTFMVPATMILLGAGLILG 289
>gi|239929198|ref|ZP_04686151.1| integral membrane protein [Streptomyces ghanaensis ATCC 14672]
gi|291437532|ref|ZP_06576922.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672]
gi|291340427|gb|EFE67383.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672]
Length = 295
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/156 (30%), Positives = 77/156 (49%), Gaps = 3/156 (1%)
Query: 166 VWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLT 225
V I + ++ R+ I+R PD LD+L + V +G+ QAL RVA G P ++E+ +T
Sbjct: 132 VGIWSAIRIRKDVIERTLPDFLDVLAVVVSAGLGFRQALDRVASKYEG---PWADELRIT 188
Query: 226 IAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLM 285
+ ++ +R+ AF R + V AL Q + G I D+L L + R
Sbjct: 189 LRQMDLGMSRRQAFAELRRRNDSEQVAMFVTALQQGEELGAPIVDTLVSLAKDMRRTDAQ 248
Query: 286 EAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILS 321
A +KAA PK T+ + F +P ++++ IL
Sbjct: 249 NARRKAARAVPKATMMITTFMVPATMILLGAGLILG 284
>gi|325518470|gb|EGC98169.1| pilus assembly protein [Burkholderia sp. TJI49]
Length = 211
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 88/182 (48%), Gaps = 5/182 (2%)
Query: 150 VGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAE 209
+G + G +GF P +++ R+ S++ P +D+L + G+S+DQ+L+ V
Sbjct: 32 IGMFVAFG-LGFMLPKLYVQRRASSRRQSVEDELPLFVDMLRLLQGVGLSLDQSLQVVTN 90
Query: 210 DIGGQSVPLSEEMLLTIAELSFLPNR--QVAFENFYNRTQMDCVRNATQALIQSDRYGTS 267
D G LS E + IA+ F+ R + + + + + +R + ++Q D++G +
Sbjct: 91 DFRGMMPVLSSE--VGIAQRQFVAGRTREQSMQRLSGGFENEDLRAIVRLMVQVDKHGGA 148
Query: 268 IGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
+ + L+ R R ++ L K+T M++ LP L++V GP L++ +
Sbjct: 149 VQEPLKQFGDRLRETRRSMLRERIGRLTVKMTGVMVLTLLPALLIVTAGPGFLAVTRALA 208
Query: 328 DH 329
H
Sbjct: 209 TH 210
>gi|289769409|ref|ZP_06528787.1| integral membrane protein [Streptomyces lividans TK24]
gi|289699608|gb|EFD67037.1| integral membrane protein [Streptomyces lividans TK24]
Length = 291
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/170 (28%), Positives = 83/170 (48%), Gaps = 4/170 (2%)
Query: 152 AVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDI 211
A++L+ + F V I + ++ R+ I+R PD LD+L + V +G+ QAL RV+
Sbjct: 115 ALLLLAFGAFWT-EVGIWSAIRIRKDVIERTLPDFLDVLAVVVSAGLGFRQALDRVSTRY 173
Query: 212 GGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDS 271
G P ++E+ +T+ ++ R+ AF R + V AL Q + G I D+
Sbjct: 174 EG---PWADELRITLRQMDLGMGRREAFTELRRRNDSEQVAMFVTALQQGEELGAPIVDT 230
Query: 272 LRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILS 321
L L + R A +KAA PK T+ + F +P ++++ IL
Sbjct: 231 LVSLAKDMRRTDAQNARRKAARAVPKATLMITTFMVPATMILLGAGLILG 280
>gi|319795783|ref|YP_004157423.1| type II secretion system f domain [Variovorax paradoxus EPS]
gi|315598246|gb|ADU39312.1| Type II secretion system F domain [Variovorax paradoxus EPS]
Length = 316
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 73/320 (22%), Positives = 146/320 (45%), Gaps = 17/320 (5%)
Query: 11 ATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASS 70
+ +LAVA ++ + +L + +L + EL + A+ R I R + +A
Sbjct: 5 SAQLAVA---SLVLLALGLTIAAGALIATELRRARSGHAIGRAIRRGVETQIEPASTAEP 61
Query: 71 RLRTRDSKSLRNFVKKLNLKAILVDEN--IVNKLRAAGFRSEYSLNILLVVRLVVPIIFL 128
+ D + +++ +A++ DE+ ++++ G S+ + I LV R+ + ++
Sbjct: 62 EVPRSDIELPFHWLDTRMGRALVADEDRQLIDQ---CGLPSQRAQLIFLVTRIALAVLLP 118
Query: 129 ILG-IIWIFGYDKLLEYPFQLRVGAVILIGYV-GFCAPSVWISNLVQKRQSSIKRAWPDA 186
+L +W G+ Q V AV+++ +V GF P + R+ + + P
Sbjct: 119 LLVYALWSTGHS-------QRTVIAVLVVAFVFGFMVPKWVLGQFAAARRERVAQELPLF 171
Query: 187 LDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRT 246
+DLL + G+S+DQ+L+ +A D L E+ + S R+ + +
Sbjct: 172 IDLLRLLQGVGLSLDQSLQIMANDFSHVLRVLGYELAFANRQYSQGRTREHSLQRLATLH 231
Query: 247 QMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFF 306
+ + + L+Q DR+G +I + LR+ R R E + + + K+T M+
Sbjct: 232 KNENLGGLVSLLVQVDRHGGAIQEPLRIFSDRLREHRRSEMKDRIGKITVKMTGVMVTTL 291
Query: 307 LPVLILVIIGPAILSIIDTM 326
LP LI+V GP ++II ++
Sbjct: 292 LPALIIVTAGPGFIAIIRSL 311
>gi|302558695|ref|ZP_07311037.1| integral membrane protein [Streptomyces griseoflavus Tu4000]
gi|302476313|gb|EFL39406.1| integral membrane protein [Streptomyces griseoflavus Tu4000]
Length = 295
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 80/160 (50%), Gaps = 4/160 (2%)
Query: 166 VWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLT 225
V I + ++ R+ I+R PD LD+L + V +G+ QAL RV+ G P ++E+ +T
Sbjct: 132 VGIWSAIRVRRDVIERTLPDFLDVLAVVVSAGLGFRQALDRVSSKYEG---PWADELRIT 188
Query: 226 IAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLM 285
+ ++ +R+ AF R + V AL Q + G I D+L L + R
Sbjct: 189 LRQMDLGMSRRQAFAELRRRNDSEQVAMFVTALQQGEELGAPIVDTLVSLAKDMRRTDAQ 248
Query: 286 EAEKKAASLGPKLTVPMIIFFLP-VLILVIIGPAILSIID 324
A +KAA PK T+ + F +P +IL+ G + S ID
Sbjct: 249 NARRKAARAVPKATMMITTFMVPATMILLGAGLILGSGID 288
>gi|239817416|ref|YP_002946326.1| type II secretion system protein [Variovorax paradoxus S110]
gi|239803993|gb|ACS21060.1| type II secretion system protein [Variovorax paradoxus S110]
Length = 319
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 65/252 (25%), Positives = 114/252 (45%), Gaps = 17/252 (6%)
Query: 76 DSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILG-IIW 134
DSK R FV + + L+D+ GF S+ + I LV RL++ + I+ I+W
Sbjct: 79 DSKIGRAFVADEDRR--LIDQ--------CGFASKQAQLIFLVTRLLLAFLLPIISYIVW 128
Query: 135 IFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICV 194
L E + + A + VGF P + + R+ I R P +DLL +
Sbjct: 129 ---KSHLTERTVLVVLAAAFV---VGFMTPKWALGRIAAGRRERIARELPLFVDLLKLLQ 182
Query: 195 ESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNA 254
G+S+DQ+L+ +A+D L E+ + S R+ + + +R
Sbjct: 183 GVGLSLDQSLQIMADDFSHVLHVLGHELTFANRQYSQGRTREHSLHRLATLHGNEDLRGL 242
Query: 255 TQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVI 314
L+Q DR+G ++ + LR+ R R E +++ + K+T M+ LP L++V
Sbjct: 243 VSLLVQVDRHGGAVQEPLRIFGERLRERRRSEMKERIGKITVKMTGVMVSTLLPALVIVT 302
Query: 315 IGPAILSIIDTM 326
GP ++I ++
Sbjct: 303 AGPGFIAIFRSL 314
>gi|297157606|gb|ADI07318.1| integral membrane protein [Streptomyces bingchenggensis BCW-1]
Length = 297
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 51/161 (31%), Positives = 85/161 (52%), Gaps = 6/161 (3%)
Query: 165 SVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLL 224
+W + V++R+ +I+R PD LD+L + V +G+S QAL RVAE G P ++E+ +
Sbjct: 135 GIWAA--VRERRHAIERTLPDFLDVLAVVVSAGLSFRQALDRVAEKYEG---PWADELRI 189
Query: 225 TIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERL 284
T+ ++ +R+ AFE R + V L Q + G I ++L + ++ R
Sbjct: 190 TLRQMDMGVSRRQAFEELRKRNDSEQVAQFVTTLQQGEELGAPIVETLIAIANDMRRTDA 249
Query: 285 MEAEKKAASLGPKLTVPMIIFFLP-VLILVIIGPAILSIID 324
A ++AA PK T+ + F +P +IL+I G I S D
Sbjct: 250 QNARRRAARAVPKATMVVTTFMVPGTMILLIAGFFIGSGTD 290
>gi|254393103|ref|ZP_05008263.1| conserved hypothetical protein [Streptomyces clavuligerus ATCC
27064]
gi|294814750|ref|ZP_06773393.1| Integral membrane protein [Streptomyces clavuligerus ATCC 27064]
gi|326443129|ref|ZP_08217863.1| putative integral membrane protein [Streptomyces clavuligerus ATCC
27064]
gi|197706750|gb|EDY52562.1| conserved hypothetical protein [Streptomyces clavuligerus ATCC
27064]
gi|294327349|gb|EFG08992.1| Integral membrane protein [Streptomyces clavuligerus ATCC 27064]
Length = 295
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 72/137 (52%), Gaps = 3/137 (2%)
Query: 179 IKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVA 238
I+R PD LD+L + V +G+ QAL RVAE G P S+E+ +T+ ++ +R+ A
Sbjct: 145 IERTLPDFLDVLAVVVSAGLGFRQALERVAEKYEG---PWSDELRITLRQMDMGVSRRDA 201
Query: 239 FENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKL 298
F+ R + V AL Q + G I D+L + ++ R A ++AA PK
Sbjct: 202 FDQLRRRNDSEQVSMFVTALQQGEELGAPIVDTLIQIATDMRRTDAQNARREAARAVPKS 261
Query: 299 TVPMIIFFLPVLILVII 315
T+ + + LP +++I+
Sbjct: 262 TLVVTLVMLPATMILIV 278
>gi|218679577|ref|ZP_03527474.1| type II secretion system protein [Rhizobium etli CIAT 894]
Length = 51
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/48 (68%), Positives = 39/48 (81%)
Query: 277 SETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIID 324
E R ER+ EAEKKAA+L PKLTVPMI+FFLPVLI VI+GPA + + D
Sbjct: 2 QEGRDERMNEAEKKAAALPPKLTVPMILFFLPVLIAVILGPAGIQVSD 49
>gi|297202077|ref|ZP_06919474.1| integral membrane protein [Streptomyces sviceus ATCC 29083]
gi|297148030|gb|EDY58317.2| integral membrane protein [Streptomyces sviceus ATCC 29083]
Length = 296
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 72/146 (49%), Gaps = 3/146 (2%)
Query: 166 VWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLT 225
V I + ++ R+ I+R PD LD+L + V +G+ QAL RVA G P ++E+ +T
Sbjct: 133 VGIWSAIRVRKDVIERTLPDFLDVLAVVVSAGLGFRQALDRVASKYEG---PWADELRIT 189
Query: 226 IAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLM 285
+ ++ +R+ AF R + V AL Q + G I D+L L + R
Sbjct: 190 LRQMDLGMSRRQAFAELRRRNDSEQVAMFVTALQQGEELGAPIVDTLVSLAKDMRRTDAQ 249
Query: 286 EAEKKAASLGPKLTVPMIIFFLPVLI 311
A +KAA PK T+ + F +P +
Sbjct: 250 NARRKAARAVPKATMMITTFMVPATM 275
>gi|221070078|ref|ZP_03546183.1| type II secretion system protein [Comamonas testosteroni KF-1]
gi|220715101|gb|EED70469.1| type II secretion system protein [Comamonas testosteroni KF-1]
Length = 317
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 66/131 (50%)
Query: 196 SGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNAT 255
+G+S+DQ L+ + D G LS E+ L + S R+ +F Q D + N T
Sbjct: 182 TGMSLDQTLQVIGSDFGNVMPVLSREIQLANQQYSRGGTRERSFARMSEVYQSDNLANLT 241
Query: 256 QALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVII 315
+ Q DRYG ++ + LR+ R +R + ++ + K+T M++ LP LI+V
Sbjct: 242 SLMTQIDRYGGAVQEPLRIFGERLREQRKAKMKEMIGKISVKMTGVMVLTLLPALIIVTA 301
Query: 316 GPAILSIIDTM 326
GP L+++ +
Sbjct: 302 GPGFLAVMKAL 312
>gi|238789152|ref|ZP_04632940.1| Type II secretion system protein [Yersinia frederiksenii ATCC
33641]
gi|238722684|gb|EEQ14336.1| Type II secretion system protein [Yersinia frederiksenii ATCC
33641]
Length = 264
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/189 (26%), Positives = 97/189 (51%), Gaps = 9/189 (4%)
Query: 141 LLEYPFQLRVGAVILIGYVGFCA----PSVWISNLVQKRQSSIKRAWPDALDLLLICVES 196
LL + + I+IG + P V I+ ++ +R S+ ++ P +D+ CV+S
Sbjct: 73 LLTNIIETNIDTFIIIGLITLMTTLYLPKVLINKVIIRRTESVLKSLPFFIDITAACVQS 132
Query: 197 GISIDQALRRVAEDIGGQSVPLSEEMLLTI--AELSFLPNRQVAFENFYNRTQMDCVRNA 254
G++ID +L A+ + LS M+ I AE++ L + A + ++ + ++
Sbjct: 133 GMTIDNSLSYAAKKFELINHDLSLIMIRMIKRAEINGL---ESAIKELHHSSNALEIKMF 189
Query: 255 TQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVI 314
AL S +G+S+ D L L + R +L+ E++ + L KLT P+ +F L ++++
Sbjct: 190 CSALQYSISFGSSVYDQLINLSQDMREMQLLVTEERISKLSAKLTFPLFLFILIPFVVLV 249
Query: 315 IGPAILSII 323
I P++L I+
Sbjct: 250 ISPSVLEIL 258
>gi|21223384|ref|NP_629163.1| integral membrane protein [Streptomyces coelicolor A3(2)]
gi|8218173|emb|CAB92604.1| putative integral membrane protein [Streptomyces coelicolor A3(2)]
Length = 300
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 85/171 (49%), Gaps = 6/171 (3%)
Query: 152 AVILIGYVGFCAPS-VWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAED 210
A++L+ + F + +W + ++ R+ I+R PD LD+L + V +G+ QAL RV+
Sbjct: 124 ALLLLAFGAFWTEAGIW--SAIRIRKDVIERTLPDFLDVLAVVVSAGLGFRQALDRVSTR 181
Query: 211 IGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGD 270
G P ++E+ +T+ ++ +R+ AF R + V AL Q + G I D
Sbjct: 182 YEG---PWADELRITLRQMDLGMSRREAFTELRRRNDSEQVAMFVTALQQGEELGAPIVD 238
Query: 271 SLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILS 321
+L L + R A +KAA PK T+ + F +P ++++ IL
Sbjct: 239 TLVSLAKDMRRTDAQNARRKAARAVPKATLMITTFMVPATMILLGAGLILG 289
>gi|163801322|ref|ZP_02195221.1| hypothetical protein 1103602000598_AND4_10654 [Vibrio sp. AND4]
gi|159174811|gb|EDP59611.1| hypothetical protein AND4_10654 [Vibrio sp. AND4]
Length = 298
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 76/144 (52%), Gaps = 1/144 (0%)
Query: 180 KRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAF 239
K + LDLL +SG++++ AL V+E IG S LS + + ++S +A
Sbjct: 153 KTNFTYFLDLLATATKSGMTVELALVAVSEYIGNMSSSLSNYIKIYSNDIS-NNGFSIAG 211
Query: 240 ENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLT 299
EN + VR+ T L + G + D+LRVL E R+ +E E+K + K+
Sbjct: 212 ENLRKSLDLPEVRDFTAVLENALESGAPVTDALRVLSKEIRNFHFIETEEKIGKVNAKMG 271
Query: 300 VPMIIFFLPVLILVIIGPAILSII 323
+P+I+F + +I+ II P +L+++
Sbjct: 272 IPLILFIMFPIIVEIIAPGVLNLL 295
>gi|33152381|ref|NP_873734.1| tight adherence protein C [Haemophilus ducreyi 35000HP]
gi|33148604|gb|AAP96123.1| tight adherence protein C [Haemophilus ducreyi 35000HP]
Length = 290
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 98/183 (53%), Gaps = 8/183 (4%)
Query: 143 EYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQ 202
E F L V++ V PS+ ++ +++ + I P +DL+ + V++GISI+
Sbjct: 110 ELEFMLGEAVVVV---VAIMLPSMIVNMIIKSKIKRIMSDLPGFIDLVAVNVQTGISIEA 166
Query: 203 ALRRVAEDIGGQSVPLSEEMLLTI--AELSFLPNRQVAFENFYNRTQMDCVRNATQALIQ 260
A ++V+ D + L+ +L I AEL+ L VA ++ +R + Q
Sbjct: 167 AFKQVSMDFERLNPDLTYVLLRIIRRAELTSL---NVALQDLAISLPTKEIRMFCTVMQQ 223
Query: 261 SDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAIL 320
S +G+S+ D+L +L ++ R +L+ E+K +L K++VP+I+F + +I++I+ P +
Sbjct: 224 SLNFGSSVYDNLTMLSADIRDMQLLVMEEKLGTLAAKMSVPLILFVMFPIIILIVAPGAM 283
Query: 321 SII 323
++
Sbjct: 284 RVL 286
>gi|21326712|gb|AAL92472.1| TadC [Haemophilus ducreyi]
Length = 281
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 98/183 (53%), Gaps = 8/183 (4%)
Query: 143 EYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQ 202
E F L V++ V PS+ ++ +++ + I P +DL+ + V++GISI+
Sbjct: 101 ELEFMLGEAVVVV---VAIMLPSMIVNMIIKSKIKRIMSDLPGFIDLVAVNVQTGISIEA 157
Query: 203 ALRRVAEDIGGQSVPLSEEMLLTI--AELSFLPNRQVAFENFYNRTQMDCVRNATQALIQ 260
A ++V+ D + L+ +L I AEL+ L VA ++ +R + Q
Sbjct: 158 AFKQVSMDFERLNPDLTYVLLRIIRRAELTSL---NVALQDLAISLPTKEIRMFCTVMQQ 214
Query: 261 SDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAIL 320
S +G+S+ D+L +L ++ R +L+ E+K +L K++VP+I+F + +I++I+ P +
Sbjct: 215 SLNFGSSVYDNLTMLSADIRDMQLLVMEEKLGTLAAKMSVPLILFVMFPIIILIVAPGAM 274
Query: 321 SII 323
++
Sbjct: 275 RVL 277
>gi|330816719|ref|YP_004360424.1| Type II secretion system protein [Burkholderia gladioli BSR3]
gi|327369112|gb|AEA60468.1| Type II secretion system protein [Burkholderia gladioli BSR3]
Length = 329
Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 53/241 (21%), Positives = 111/241 (46%), Gaps = 14/241 (5%)
Query: 90 KAILVDENIVNKLRAAGFRSEYSLNILLVVRL----VVPIIFLILGIIWIFGYDKLLEYP 145
K ++ DE+ L G+ + + L R+ V+P+ L++ ++ G L+
Sbjct: 94 KQLVADED-RQFLEQCGYVEARARGLFLFSRVLCASVLPLAVLMISLVRGSGGKSLIYIA 152
Query: 146 FQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALR 205
F + +GF P ++I R+ S+ P +D+L + G+S+DQ+++
Sbjct: 153 FAI---------AIGFMLPKLYIRRKAAARRESVAEEMPLFVDMLRLLQGVGLSLDQSMQ 203
Query: 206 RVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYG 265
++ D LS E+ + + + R+ + + + +R+ + LIQ D++G
Sbjct: 204 VISHDFTTMLPVLSWELGVAQRQFAAGRTREQSLARLTSSFDNEDLRSIVRLLIQVDKHG 263
Query: 266 TSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDT 325
++ + LR+ R R ++ L K+T MI+ LP L++V GP I++++
Sbjct: 264 GAVQEPLRMFGDRLRDGRRALLRERIGRLTVKMTGVMIVTLLPALLIVTAGPGIMTVVSA 323
Query: 326 M 326
+
Sbjct: 324 L 324
>gi|153950588|ref|YP_001399590.1| type II secretion system protein [Yersinia pseudotuberculosis IP
31758]
gi|152962083|gb|ABS49544.1| type II secretion system protein [Yersinia pseudotuberculosis IP
31758]
Length = 277
Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 56/219 (25%), Positives = 112/219 (51%), Gaps = 12/219 (5%)
Query: 114 NILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQ 173
NIL + L+V I IL I+ IF + + L +G + +I + P + I N +
Sbjct: 66 NILYLKVLIVIFILSILAILAIFNVVNINQKTL-LTIGLLSIISTLYL--PRMIIKNALT 122
Query: 174 KRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEM--LLTIAELSF 231
KR +++ ++ P +D+ CV+SG++I+ +L + + L M + AE++
Sbjct: 123 KRTNTLLKSLPFFIDITAACVQSGMTIENSLNYTTQKFQTINTDLCLIMSKVTKRAEING 182
Query: 232 LPN--RQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEK 289
L N +++ + + +M C L S +G+++ + L L + R +L+ E+
Sbjct: 183 LENAIKELQYYSPAIEMKMFC-----STLQYSLSFGSTVYEQLTHLSQDMREMQLLMTEE 237
Query: 290 KAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMKD 328
+ L KLT+P+ +F L +L++I P+IL +++ +K+
Sbjct: 238 SISKLSTKLTLPLFLFILIPFVLLVISPSILELLNYVKN 276
>gi|304311188|ref|YP_003810786.1| type II secretion system protein [gamma proteobacterium HdN1]
gi|301796921|emb|CBL45134.1| type II secretion system protein [gamma proteobacterium HdN1]
Length = 319
Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 83/175 (47%), Gaps = 12/175 (6%)
Query: 140 KLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGIS 199
KLL YP L VGF P +W+S+ + +R+ + +P LDLL++ + +G++
Sbjct: 134 KLLLYPLAL----------VGFFYPDIWLSDQINRRRRITLKEFPFMLDLLVLGMRAGLN 183
Query: 200 IDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALI 259
AL E + + +E + E+ +R+ A +R ++ + N A+
Sbjct: 184 YAAALGHAIEAMPNGVI--RDEFSKVLREIRAGKSRREALLTLADRMNLEAISNFVAAVN 241
Query: 260 QSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVI 314
Q + G I L V + R+ER AE A ++ +PM++F P++ +++
Sbjct: 242 QVEETGGEIVSVLMVQAEQRRNERFTAAEIAANKAPIRMLIPMMLFLFPIIFMLL 296
>gi|302553855|ref|ZP_07306197.1| integral membrane protein [Streptomyces viridochromogenes DSM
40736]
gi|302471473|gb|EFL34566.1| integral membrane protein [Streptomyces viridochromogenes DSM
40736]
Length = 295
Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 72/146 (49%), Gaps = 3/146 (2%)
Query: 166 VWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLT 225
V I + ++ R+ I+R PD LD+L + V +G+ QAL RVA G P ++E+ +T
Sbjct: 132 VGIWSAIRIRKDVIERTLPDFLDVLAVVVSAGLGFRQALDRVASRYEG---PWADELRIT 188
Query: 226 IAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLM 285
+ ++ +R+ AF R + V AL Q + G I D+L L + R
Sbjct: 189 LRQMDLGMSRRQAFAELRRRNDSEQVAMFVTALQQGEELGAPIVDTLVSLAKDMRRTDAQ 248
Query: 286 EAEKKAASLGPKLTVPMIIFFLPVLI 311
A +KAA PK T+ + F +P +
Sbjct: 249 NARRKAARAVPKATMMITTFMVPATM 274
>gi|134295599|ref|YP_001119334.1| type II secretion system protein [Burkholderia vietnamiensis G4]
gi|134138756|gb|ABO54499.1| type II secretion system protein [Burkholderia vietnamiensis G4]
Length = 330
Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 51/223 (22%), Positives = 96/223 (43%), Gaps = 21/223 (9%)
Query: 113 LNILLVVRLVVPIIFLIL------GIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSV 166
L+ LV + VP++F IL G W G VGF P +
Sbjct: 122 LSARLVCGITVPLLFAILASGRMKGGYWTIGMFAAFS---------------VGFMLPKL 166
Query: 167 WISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTI 226
++ R+ S+ P +D+L + G+S+DQ+L+ V D G LS E+ +
Sbjct: 167 YVQRRAAARRQSVIDELPLFVDMLRLLQGVGLSLDQSLQVVTNDFRGMMPVLSSEVGIAQ 226
Query: 227 AELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLME 286
+ + R + + + + +R + ++Q D++G ++ + L+ R R
Sbjct: 227 RQFAAGRTRDQSMQRLSSGFDNEDLRAIARLMVQVDKHGGAVQEPLKQFGDRLRETRRAM 286
Query: 287 AEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMKDH 329
+ L K+T M++ LP L++V GP +L+++ + H
Sbjct: 287 LRDRIGRLTVKMTGVMVVTLLPALLIVTAGPGLLAVMRALAVH 329
>gi|51597675|ref|YP_071866.1| hypothetical protein YPTB3377 [Yersinia pseudotuberculosis IP
32953]
gi|51590957|emb|CAH22615.1| Putative exported protein [Yersinia pseudotuberculosis IP 32953]
Length = 277
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 56/219 (25%), Positives = 112/219 (51%), Gaps = 12/219 (5%)
Query: 114 NILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQ 173
NIL + L+V I IL I+ IF + + L +G + +I + P + I N +
Sbjct: 66 NILYLKVLIVIFILSILTILAIFNVVNINQKTL-LTIGLLSIISTLYL--PKMIIKNALT 122
Query: 174 KRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEM--LLTIAELSF 231
KR +++ ++ P +D+ CV+SG++I+ +L + + L M + AE++
Sbjct: 123 KRTNNLLKSLPFFIDITAACVQSGMTIENSLNYTTQKFQTINTDLCLIMSKVTKRAEING 182
Query: 232 LPN--RQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEK 289
L N +++ + + +M C L S +G+++ + L L + R +L+ E+
Sbjct: 183 LENAIKELQYYSPAIEMKMFC-----STLQYSISFGSTVYEQLTHLSQDMREMQLLMTEE 237
Query: 290 KAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMKD 328
+ L KLT+P+ +F L +L++I P+IL +++ +K+
Sbjct: 238 SISKLSTKLTLPLFLFILIPFVLLVISPSILELLNYVKN 276
>gi|238796992|ref|ZP_04640496.1| Type II secretion system protein [Yersinia mollaretii ATCC 43969]
gi|238719252|gb|EEQ11064.1| Type II secretion system protein [Yersinia mollaretii ATCC 43969]
Length = 267
Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 97/180 (53%), Gaps = 3/180 (1%)
Query: 150 VGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAE 209
VG ++LI + + P + I ++ KR SI ++ P +D+ CV+SG++ID +L A+
Sbjct: 91 VGLIVLIA-ISYL-PKMIIKKIITKRTESILKSLPFFIDITAACVQSGMTIDNSLSYSAK 148
Query: 210 DIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIG 269
+ +S ++L + + + + A + + T +R AL S +G+++
Sbjct: 149 KFKLINADISF-IMLKMTKRGEINGLESAIKELHQCTTAKEIRMFCSALQYSISFGSTVY 207
Query: 270 DSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMKDH 329
D L L + R +L+ E++ + L KLT+P+ +F L I+++I P+IL II ++++
Sbjct: 208 DQLTKLSQDIREMQLLVTEERISKLSAKLTIPLFLFILIPFIVLVISPSILEIITYVQNN 267
>gi|260914307|ref|ZP_05920776.1| Flp pilus assembly protein TadC [Pasteurella dagmatis ATCC 43325]
gi|260631408|gb|EEX49590.1| Flp pilus assembly protein TadC [Pasteurella dagmatis ATCC 43325]
Length = 285
Score = 66.6 bits (161), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 89/171 (52%), Gaps = 1/171 (0%)
Query: 152 AVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDI 211
A LI + P + +++++ + I P +DL+ + V++GISID AL++VA D
Sbjct: 111 ATALILVLTILIPGILTNSILKSKIKKIMVDLPGFIDLVAVNVQTGISIDAALKQVAIDF 170
Query: 212 GGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDS 271
+ L+ ML I + S + A ++ VR L QS +G+SI
Sbjct: 171 KKLNPDLTYVMLRIIRK-SEITGLSSALQDLSISLPTTEVRMFCSVLQQSLNFGSSIYSH 229
Query: 272 LRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
L L ++ R +L+ E+K +L K+++P+I+F + +I++I+ P I+ +
Sbjct: 230 LIQLSADIRELQLLTIEEKLGTLAAKMSIPLILFIMFPIIILILAPGIMRV 280
>gi|22127363|ref|NP_670786.1| hypothetical protein y3489 [Yersinia pestis KIM 10]
gi|45442765|ref|NP_994304.1| hypothetical protein YP_3003 [Yersinia pestis biovar Microtus str.
91001]
gi|108809095|ref|YP_653011.1| hypothetical protein YPA_3104 [Yersinia pestis Antiqua]
gi|108810710|ref|YP_646477.1| hypothetical protein YPN_0545 [Yersinia pestis Nepal516]
gi|145597782|ref|YP_001161858.1| hypothetical protein YPDSF_0472 [Yersinia pestis Pestoides F]
gi|150260282|ref|ZP_01917010.1| putative type II secretion system integral membrane protein
[Yersinia pestis CA88-4125]
gi|162421097|ref|YP_001604880.1| hypothetical protein YpAngola_A0262 [Yersinia pestis Angola]
gi|165925128|ref|ZP_02220960.1| type II secretion system protein [Yersinia pestis biovar Orientalis
str. F1991016]
gi|165939890|ref|ZP_02228429.1| type II secretion system protein [Yersinia pestis biovar Orientalis
str. IP275]
gi|166009023|ref|ZP_02229921.1| type II secretion system protein [Yersinia pestis biovar Antiqua
str. E1979001]
gi|166212095|ref|ZP_02238130.1| type II secretion system protein [Yersinia pestis biovar Antiqua
str. B42003004]
gi|167419193|ref|ZP_02310946.1| type II secretion system protein [Yersinia pestis biovar Orientalis
str. MG05-1020]
gi|167425195|ref|ZP_02316948.1| type II secretion system protein [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|167466380|ref|ZP_02331084.1| type II secretion system protein [Yersinia pestis FV-1]
gi|186896813|ref|YP_001873925.1| type II secretion system protein [Yersinia pseudotuberculosis
PB1/+]
gi|218927879|ref|YP_002345754.1| hypothetical protein YPO0688 [Yersinia pestis CO92]
gi|229837370|ref|ZP_04457533.1| Type II/IV secretion system protein TadC,associated with Flp pilus
assembly [Yersinia pestis Pestoides A]
gi|229840582|ref|ZP_04460741.1| Type II/IV secretion system protein TadC,associated with Flp pilus
assembly [Yersinia pestis biovar Orientalis str. PEXU2]
gi|229842868|ref|ZP_04463020.1| Type II/IV secretion system protein TadC,associated with Flp pilus
assembly [Yersinia pestis biovar Orientalis str. India
195]
gi|229900907|ref|ZP_04516031.1| Type II/IV secretion system protein TadC,associated with Flp pilus
assembly [Yersinia pestis Nepal516]
gi|270487717|ref|ZP_06204791.1| type II secretion system F domain protein [Yersinia pestis KIM D27]
gi|294502754|ref|YP_003566816.1| hypothetical protein YPZ3_0644 [Yersinia pestis Z176003]
gi|21960448|gb|AAM87037.1|AE013952_4 hypothetical [Yersinia pestis KIM 10]
gi|45437631|gb|AAS63181.1| putative exported protein [Yersinia pestis biovar Microtus str.
91001]
gi|108774358|gb|ABG16877.1| hypothetical protein YPN_0545 [Yersinia pestis Nepal516]
gi|108781008|gb|ABG15066.1| hypothetical protein YPA_3104 [Yersinia pestis Antiqua]
gi|115346490|emb|CAL19364.1| putative exported protein [Yersinia pestis CO92]
gi|145209478|gb|ABP38885.1| hypothetical protein YPDSF_0472 [Yersinia pestis Pestoides F]
gi|149289690|gb|EDM39767.1| putative type II secretion system integral membrane protein
[Yersinia pestis CA88-4125]
gi|162353912|gb|ABX87860.1| type II secretion system protein [Yersinia pestis Angola]
gi|165912201|gb|EDR30839.1| type II secretion system protein [Yersinia pestis biovar Orientalis
str. IP275]
gi|165923328|gb|EDR40479.1| type II secretion system protein [Yersinia pestis biovar Orientalis
str. F1991016]
gi|165992362|gb|EDR44663.1| type II secretion system protein [Yersinia pestis biovar Antiqua
str. E1979001]
gi|166206841|gb|EDR51321.1| type II secretion system protein [Yersinia pestis biovar Antiqua
str. B42003004]
gi|166963187|gb|EDR59208.1| type II secretion system protein [Yersinia pestis biovar Orientalis
str. MG05-1020]
gi|167055958|gb|EDR65739.1| type II secretion system protein [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|186699839|gb|ACC90468.1| type II secretion system protein [Yersinia pseudotuberculosis
PB1/+]
gi|229682246|gb|EEO78338.1| Type II/IV secretion system protein TadC,associated with Flp pilus
assembly [Yersinia pestis Nepal516]
gi|229690135|gb|EEO82192.1| Type II/IV secretion system protein TadC,associated with Flp pilus
assembly [Yersinia pestis biovar Orientalis str. India
195]
gi|229696948|gb|EEO86995.1| Type II/IV secretion system protein TadC,associated with Flp pilus
assembly [Yersinia pestis biovar Orientalis str. PEXU2]
gi|229705493|gb|EEO91503.1| Type II/IV secretion system protein TadC,associated with Flp pilus
assembly [Yersinia pestis Pestoides A]
gi|262364731|gb|ACY61288.1| hypothetical protein YPD8_0598 [Yersinia pestis D182038]
gi|270336221|gb|EFA46998.1| type II secretion system F domain protein [Yersinia pestis KIM D27]
gi|294353213|gb|ADE63554.1| hypothetical protein YPZ3_0644 [Yersinia pestis Z176003]
gi|320016749|gb|ADW00321.1| Type II/IV secretion system protein TadC,associated with Flp pilus
assembly [Yersinia pestis biovar Medievalis str. Harbin
35]
Length = 277
Score = 66.6 bits (161), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 56/219 (25%), Positives = 112/219 (51%), Gaps = 12/219 (5%)
Query: 114 NILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQ 173
NIL + L+V I IL I+ IF + + L +G + +I + P + I N +
Sbjct: 66 NILYLKVLIVIFILSILTILAIFNVVNINQKTL-LTIGLLSIISTLYL--PRMIIKNALT 122
Query: 174 KRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEM--LLTIAELSF 231
KR +++ ++ P +D+ CV+SG++I+ +L + + L M + AE++
Sbjct: 123 KRTNNLLKSLPFFIDITAACVQSGMTIENSLNYTTQKFQTINTDLCLIMSKVTKRAEING 182
Query: 232 LPN--RQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEK 289
L N +++ + + +M C L S +G+++ + L L + R +L+ E+
Sbjct: 183 LENAIKELQYYSPAIEMKMFC-----STLQYSISFGSTVYEQLTHLSQDMREMQLLMTEE 237
Query: 290 KAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMKD 328
+ L KLT+P+ +F L +L++I P+IL +++ +K+
Sbjct: 238 SISKLSTKLTLPLFLFILIPFVLLVISPSILELLNYVKN 276
>gi|302542847|ref|ZP_07295189.1| putative integral membrane protein [Streptomyces hygroscopicus ATCC
53653]
gi|302460465|gb|EFL23558.1| putative integral membrane protein [Streptomyces himastatinicus
ATCC 53653]
Length = 297
Score = 66.2 bits (160), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 84/161 (52%), Gaps = 6/161 (3%)
Query: 165 SVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLL 224
+W + V++R+ +I R PD LD+L + V +G+ QAL RV+E G P ++E+ +
Sbjct: 135 GIWAA--VRERKDAIDRTLPDFLDVLAVVVSAGLGFRQALDRVSEKYEG---PWADELRI 189
Query: 225 TIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERL 284
T+ ++ +R+ AFE R + V AL Q + G I ++L + ++ R
Sbjct: 190 TLRQMDMGVSRRQAFEELRKRNDSEQVAQFVTALQQGEELGAPIVETLIAIANDMRRTDA 249
Query: 285 MEAEKKAASLGPKLTVPMIIFFLP-VLILVIIGPAILSIID 324
A ++AA PK T+ + F +P ++L++ G I S D
Sbjct: 250 QNARRRAARAVPKATMVITTFMVPGTMVLLVAGFFIGSGTD 290
>gi|218663023|ref|ZP_03518953.1| putative tadC pilus assembly protein [Rhizobium etli IE4771]
Length = 145
Score = 66.2 bits (160), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 74/138 (53%)
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
+L++C+++G+SI+ A RVA + + + + + E+ + A N R ++
Sbjct: 1 MLIVCLDAGMSIEAAANRVAREFVDKQQDFGLHLSIMMLEVRGGRRLREALANLATRLRI 60
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP 308
D R QS+ GTS+ +LRV E R R++ AE+KA +L K+ +P+ F P
Sbjct: 61 DEARALAVLFRQSEELGTSVTQTLRVYSKEMRDLRIVRAEEKANALPVKMLLPLGAFLFP 120
Query: 309 VLILVIIGPAILSIIDTM 326
V +++++ P ++ ++ +
Sbjct: 121 VSLIIVLVPIVIRVVSLL 138
>gi|148556412|ref|YP_001263994.1| type II secretion system protein [Sphingomonas wittichii RW1]
gi|148501602|gb|ABQ69856.1| type II secretion system protein [Sphingomonas wittichii RW1]
Length = 297
Score = 65.9 bits (159), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 64/267 (23%), Positives = 112/267 (41%), Gaps = 19/267 (7%)
Query: 73 RTRDSKSLRNFVKKLNLKAILVDEN-----IVNKLRAAGFRSEYSLNILLVVRLVVPIIF 127
RT +++ R L L A L I +LR AG ++ L +RL +
Sbjct: 38 RTVSAQAARPLWGGLKLPAFLAPRGRDGSEIARELREAGIHHPRAIEYFLWLRLGATAVA 97
Query: 128 LILGIIW-IFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDA 186
L I + L P VIL G + + L RQ +I +P
Sbjct: 98 CGLAAIANLVATGAPLSRPVP-----VILAGAGAYLLSKRLLHFLKGVRQRAITAEFPFL 152
Query: 187 LDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFE----NF 242
LDLL + +ESG+S+DQ R +A + ++ P + T+ L F +R ++++ +
Sbjct: 153 LDLLQMMLESGLSLDQCFRSIATE-ENEATP---RLAATVRRLVFDLDRGMSYDAALGRW 208
Query: 243 YNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPM 302
RT + + Q+ GT + +LR E R+ A + + ++ + +
Sbjct: 209 AERTAVGGAKELASLFQQALLQGTELAPALRTFTREFTERRIAHARESIGRISVQMVLVL 268
Query: 303 IIFFLPVLILVIIGPAILSIIDTMKDH 329
I FLP + +V+ GP + S+ D ++
Sbjct: 269 IACFLPAIFIVVGGPPVASLFDMIRSE 295
>gi|170724975|ref|YP_001759001.1| type II secretion system protein [Shewanella woodyi ATCC 51908]
gi|169810322|gb|ACA84906.1| type II secretion system protein [Shewanella woodyi ATCC 51908]
Length = 281
Score = 65.9 bits (159), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 77/142 (54%), Gaps = 1/142 (0%)
Query: 181 RAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFE 240
R P LD++ +CV++G++++ AL +AE++ L + T A+ S + + A
Sbjct: 138 RQLPYMLDMMSVCVQTGMTVEAALAYLAEELKAFDKDLCFHIKKT-ADTSRITGLEKALL 196
Query: 241 NFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV 300
R VR+ + LIQ+ +YGTSI + L L + R +++ E+ L K++V
Sbjct: 197 ELSERIPTPEVRSFSLTLIQNIQYGTSIANVLADLAEDMRQMQVLAMEESIGKLAAKMSV 256
Query: 301 PMIIFFLPVLILVIIGPAILSI 322
P+I+F + ++++I+ P + +
Sbjct: 257 PLILFIMFPIVVLILAPGFMQL 278
>gi|116689547|ref|YP_835170.1| type II secretion system protein [Burkholderia cenocepacia HI2424]
gi|116647636|gb|ABK08277.1| type II secretion system protein [Burkholderia cenocepacia HI2424]
Length = 332
Score = 65.5 bits (158), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 50/225 (22%), Positives = 102/225 (45%), Gaps = 5/225 (2%)
Query: 102 LRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGF 161
L GF + + + R+V I+ L ++ + G + +P L + V G+
Sbjct: 108 LEQCGFVDVRARALFVGARIVCAILLPALAVLVLIGRGQQARWPLWLSIALV-----TGY 162
Query: 162 CAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEE 221
P +++ R+ S+ P +D+L + G+S+DQ+++ V D LS E
Sbjct: 163 MLPKIYVRRRATARRQSLAAELPLLVDMLRLLQGVGLSLDQSIQVVTHDFQTMLPVLSWE 222
Query: 222 MLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRS 281
+ + + + R+ + + N + +R + LIQ D++G ++ + L+ R
Sbjct: 223 LGVAQRQFAAGRTREQSLQRLTNSFDNEDLRAIVRLLIQVDKHGGAVQEPLKQFGDRLRE 282
Query: 282 ERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
R ++ L K+T MI+ LP L++V GP I++++ +
Sbjct: 283 GRRATLREQIGRLTVKMTGVMIVTLLPALLIVTAGPGIMTVLSAL 327
>gi|107022598|ref|YP_620925.1| type II secretion system protein [Burkholderia cenocepacia AU 1054]
gi|105892787|gb|ABF75952.1| type II secretion system protein [Burkholderia cenocepacia AU 1054]
Length = 321
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/225 (22%), Positives = 102/225 (45%), Gaps = 5/225 (2%)
Query: 102 LRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGF 161
L GF + + + R+V I+ L ++ + G + +P L + V G+
Sbjct: 97 LEQCGFVDVRARALFVGARIVCAILLPALAVLVLIGRGQQARWPLWLSIALV-----TGY 151
Query: 162 CAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEE 221
P +++ R+ S+ P +D+L + G+S+DQ+++ V D LS E
Sbjct: 152 MLPKIYVRRRATARRQSLAAELPLLVDMLRLLQGVGLSLDQSIQVVTHDFQTMLPVLSWE 211
Query: 222 MLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRS 281
+ + + + R+ + + N + +R + LIQ D++G ++ + L+ R
Sbjct: 212 LGVAQRQFAAGRTREQSLQRLTNSFDNEDLRAIVRLLIQVDKHGGAVQEPLKQFGDRLRE 271
Query: 282 ERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
R ++ L K+T MI+ LP L++V GP I++++ +
Sbjct: 272 GRRATLREQIGRLTVKMTGVMIVTLLPALLIVTAGPGIMTVLSAL 316
>gi|170732851|ref|YP_001764798.1| type II secretion system protein [Burkholderia cenocepacia MC0-3]
gi|169816093|gb|ACA90676.1| type II secretion system protein [Burkholderia cenocepacia MC0-3]
Length = 332
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/225 (22%), Positives = 102/225 (45%), Gaps = 5/225 (2%)
Query: 102 LRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGF 161
L GF + + + R+V I+ L ++ + G + +P L + V G+
Sbjct: 108 LEQCGFVDVRARALFVGARIVCAILLPALAVLVLIGRGQQARWPLWLSIALV-----TGY 162
Query: 162 CAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEE 221
P +++ R+ S+ P +D+L + G+S+DQ+++ V D LS E
Sbjct: 163 MLPKIYVRRRATARRQSLGAELPLLVDMLRLLQGVGLSLDQSIQVVTHDFQTMLPVLSWE 222
Query: 222 MLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRS 281
+ + + + R+ + + N + +R + LIQ D++G ++ + L+ R
Sbjct: 223 LGVAQRQFAAGRTREQSLQRLTNSFDNEDLRAIVRLLIQVDKHGGAVQEPLKQFGDRLRE 282
Query: 282 ERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
R ++ L K+T MI+ LP L++V GP I++++ +
Sbjct: 283 GRRATLREQIGRLTVKMTGVMIVTLLPALLIVTAGPGIMTVLSAL 327
>gi|78486064|ref|YP_391989.1| type II secretion system protein [Thiomicrospira crunogena XCL-2]
gi|78364350|gb|ABB42315.1| Flp (type IV) pilus assembly protein, TadB homolog [Thiomicrospira
crunogena XCL-2]
Length = 296
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 59/260 (22%), Positives = 115/260 (44%), Gaps = 17/260 (6%)
Query: 64 QKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVV 123
Q + +R +T +L F+ N K I + L AGFR E+ L ++
Sbjct: 45 QYQANVNRHKTCHWCALGAFMGPKNEKEINANRQF---LMNAGFREEHHLGAYFFIKYA- 100
Query: 124 PIIF---LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIK 180
++F L++ ++W + FQ+ IL+ P + R + +
Sbjct: 101 -LVFSSLLVMLVLWSW---------FQVSPIVAILVPLAFLLLPERVLIFWGNHRLNKVN 150
Query: 181 RAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFE 240
A PD LD+ IC+ +G+S +A++RV++++ + E I ++ RQ A +
Sbjct: 151 IALPDFLDMANICMSAGLSYLEAIKRVSKELESTFPEICYEFNFLIEQIKIGVPRQEALK 210
Query: 241 NFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV 300
F R +++ Q LIQ+++ G+ I +L +R E+KAA K+ +
Sbjct: 211 QFALRNPSKDIQDLVQMLIQNEKLGSPISTALNEFSRRMYQKRESAMEEKAAKTSAKMAI 270
Query: 301 PMIIFFLPVLILVIIGPAIL 320
++ F + ++++G I+
Sbjct: 271 VILPFLMLPYFMLMLGEKIV 290
>gi|295395665|ref|ZP_06805857.1| integral membrane protein [Brevibacterium mcbrellneri ATCC 49030]
gi|294971481|gb|EFG47364.1| integral membrane protein [Brevibacterium mcbrellneri ATCC 49030]
Length = 297
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 76/157 (48%), Gaps = 3/157 (1%)
Query: 159 VGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPL 218
+G P + +KRQ +I+ + PD LD+L + V +G+S A+ +V E G PL
Sbjct: 130 IGLLFPDFALIQSGRKRQEAIEDSLPDFLDVLAVTVSAGLSFRSAIAKVTERTQG---PL 186
Query: 219 SEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSE 278
++E+ + +L+ AF RT + + + L+Q++ G + D+L + +
Sbjct: 187 ADELNTVLHQLNMGETVYDAFSALRKRTTSESLDSFITTLLQAEELGAPLADTLATIALD 246
Query: 279 TRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVII 315
R A +KAA PK+ + I +P + +I+
Sbjct: 247 MRQTTAQRARQKAAKASPKIAGVVTIIMVPGTMALIM 283
>gi|167587310|ref|ZP_02379698.1| type II secretion system protein [Burkholderia ubonensis Bu]
Length = 264
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 57/247 (23%), Positives = 108/247 (43%), Gaps = 26/247 (10%)
Query: 90 KAILVDENIVNKLRAAGFRSEYSLNILLVVR----LVVPIIFL------ILGIIWIFGYD 139
+ I+ DE+ L G+ + + L R LV P++FL + G W+ G
Sbjct: 29 RHIVADED-RRLLEQCGYVDARTRGLFLSARIAGALVAPVLFLAFVGPRLHGGRWVLG-- 85
Query: 140 KLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGIS 199
++L GF P + I R+ ++ P +D+L + G+S
Sbjct: 86 -------------LVLAFVTGFMLPKILIRRRAAARRQAVVDELPLLVDMLRLLQGVGLS 132
Query: 200 IDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALI 259
+DQ+L+ V D G LS EM + + + R+ + + + + +R + +I
Sbjct: 133 LDQSLQVVTNDFRGMMPVLSSEMGIAQRQFAAGRTREQSLQRLASGFDNEDLRAIVRLMI 192
Query: 260 QSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAI 319
Q D++G ++ + L+ R R ++ L K+T MI+ LP L++V GP +
Sbjct: 193 QVDKHGGAVQEPLKQFGDRLREARRAMLRERIGRLTVKMTGVMIVTLLPALLIVTAGPGM 252
Query: 320 LSIIDTM 326
+S++ +
Sbjct: 253 ISVMHAL 259
>gi|332534353|ref|ZP_08410194.1| type II secretion system protein [Pseudoalteromonas haloplanktis
ANT/505]
gi|332036172|gb|EGI72646.1| type II secretion system protein [Pseudoalteromonas haloplanktis
ANT/505]
Length = 271
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/174 (22%), Positives = 86/174 (49%)
Query: 154 ILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGG 213
+L+ +V F AP W +R++ I + L +LL+ + +G S++++ +
Sbjct: 92 LLLCFVCFFAPECWFLLRKNQRKTVINNSLEFFLRVLLVYMRAGFSLERSFALAVDHGLS 151
Query: 214 QSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLR 273
Q PL +E+ L + ELS +R+ AF + + RT + ++ T ++ + GT + ++
Sbjct: 152 QKHPLYKELKLFLFELSAGKDREFAFNSLFERTGVLGIKKLTNLMLIGSKLGTPLIQAVE 211
Query: 274 VLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
+ ++ + KK T P+I+ P+ ++++ PA L +++ +K
Sbjct: 212 AQLEGLALKKNILLAKKVNKKAMHTTFPIILICFPMFLVLVFFPAALQVMNVLK 265
>gi|206559898|ref|YP_002230662.1| flp type pilus assembly protein [Burkholderia cenocepacia J2315]
gi|198035939|emb|CAR51831.1| flp type pilus assembly protein [Burkholderia cenocepacia J2315]
Length = 332
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/225 (22%), Positives = 102/225 (45%), Gaps = 5/225 (2%)
Query: 102 LRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGF 161
L GF + + + R+V I+ L ++ + G + +P + V V G+
Sbjct: 108 LEQCGFVDVRARALFVGARIVCAILLPALAVLVLIGRGQQTRWPLWISVALV-----TGY 162
Query: 162 CAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEE 221
P +++ R+ SI P +D+L + G+S+DQ+++ V D LS E
Sbjct: 163 MLPKIYVRRRATARRQSIAAELPLLVDMLRLLQGVGLSLDQSIQVVTHDFQTMLPVLSWE 222
Query: 222 MLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRS 281
+ + + + R+ + + N + +R + LIQ D++G ++ + L+ R
Sbjct: 223 LGVAQRQFAAGRTREQSLQRLTNSFDNEDLRAIVRLLIQVDKHGGAVQEPLKQFGDRLRE 282
Query: 282 ERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
R ++ L K+T MI+ LP L++V GP I++++ +
Sbjct: 283 GRRATLREQIGRLTVKMTGVMIVTLLPALLIVTAGPGIMTVLAAL 327
>gi|319779646|ref|YP_004130559.1| Type II/IV secretion system protein TadC [Taylorella equigenitalis
MCE9]
gi|317109670|gb|ADU92416.1| Type II/IV secretion system protein TadC [Taylorella equigenitalis
MCE9]
Length = 267
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/171 (22%), Positives = 81/171 (47%), Gaps = 8/171 (4%)
Query: 158 YVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVP 217
++ P +I + KR++ + +P LD+L + + SG + +L+ S+P
Sbjct: 101 FITLLWPKAYIKRYISKRRTELSEIFPFFLDVLSVSLSSGQNFTMSLQYAFN-----SLP 155
Query: 218 ---LSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRV 274
L +E+ TI E+ + A ++ R+ ++ V+ + Q+D+ G + + R
Sbjct: 156 NGVLKDELGFTIREMQAGKPKLEAIDDMAQRSDLNVVKQWVNNIKQADQLGLQLASAFRA 215
Query: 275 LVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDT 325
S R +R + AEK A K+ P++ F P +V++ P + I+++
Sbjct: 216 QASYIRKQRYLMAEKLAFEAPVKMLFPLVFFIFPCTFIVLLFPVFMQILES 266
>gi|83747913|ref|ZP_00944945.1| TRANSMEMBRANE TIGHT ADHERENCE TADC RELATED PROTEIN; tadC2
[Ralstonia solanacearum UW551]
gi|207739454|ref|YP_002257847.1| pilus assembly protein tadc [Ralstonia solanacearum IPO1609]
gi|83725446|gb|EAP72592.1| TRANSMEMBRANE TIGHT ADHERENCE TADC RELATED PROTEIN; tadC2
[Ralstonia solanacearum UW551]
gi|206592830|emb|CAQ59736.1| pilus assembly protein tadc [Ralstonia solanacearum IPO1609]
Length = 326
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 58/243 (23%), Positives = 108/243 (44%), Gaps = 14/243 (5%)
Query: 88 NLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQ 147
L +V E L G+ E + + R+++P +LG+++ + K L + F
Sbjct: 87 GLGQRIVTEEDRRLLEECGYYGEQARTVFGGTRILLPPFLCVLGVLYAAAFWKALLWGF- 145
Query: 148 LRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRV 207
A +GY+G P ++ + R+ + P +D+L + G+SIDQ+L+ +
Sbjct: 146 ----AGFALGYLG---PKWLLTRRKESRRRRVDDELPVMVDMLRLLQGVGLSIDQSLQVI 198
Query: 208 AEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTS 267
A + G L+ E + + R+ + ++ L Q DR+G +
Sbjct: 199 ANEFYGMLPVLAGEFGRANQQFASGRPREQTLLRIAKMFDSEDLKGLITLLTQVDRFGGA 258
Query: 268 IGDSLR---VLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIID 324
+ + LR V + E R RL E + L K+TV M++ LP L+++ GP +S+
Sbjct: 259 VQEPLRQFGVRLQENRRSRLKE---RVGKLTVKMTVVMVLTLLPALLIITAGPGFVSVTR 315
Query: 325 TMK 327
T+
Sbjct: 316 TLH 318
>gi|303241938|ref|ZP_07328431.1| Type II secretion system F domain protein [Acetivibrio
cellulolyticus CD2]
gi|302590493|gb|EFL60248.1| Type II secretion system F domain protein [Acetivibrio
cellulolyticus CD2]
Length = 289
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 64/268 (23%), Positives = 119/268 (44%), Gaps = 29/268 (10%)
Query: 81 RNFVKKLNL-KAILVDENIVNKLRAAGFR---SEY----------------SLNILLVVR 120
+NF L KA+ V+E+ + +L+ R +EY S+ +L
Sbjct: 30 KNFASNLYFSKAVTVEESFLKRLKNRIIRLMGNEYQEKMRIMLLQADMENVSVETVLFTS 89
Query: 121 LVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIK 180
++ +I L I + GY +L F GA + GF P +I V KR+ +
Sbjct: 90 IIASVIAATLFSIILTGYGNILAV-FGFIAGA-----FTGFKIPEAYIKRKVDKRKDILN 143
Query: 181 RAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFE 240
++LL ++G++ + A+ R+A++ L++E+ E R+ A +
Sbjct: 144 ATILYYVELLSTACQAGLNTENAIERIADNTNS---ILADEIKRIWKESYKTKTREEAIQ 200
Query: 241 NFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV 300
+ R + VR +++ Q GT + D L+ RS E KK K+
Sbjct: 201 DMIQRCGTNEVRLFMESVGQGLEMGTPVTDILKDQARSIRSRAKSEIVKKGELAKVKIVF 260
Query: 301 PMIIFFLPVLILVIIGPAILSIIDTMKD 328
PMI+F LP ++LV + PA+++++ +++
Sbjct: 261 PMILFLLPSVLLVALTPALITLMKIIQE 288
>gi|54309665|ref|YP_130685.1| Flp pilus assembly protein TadC [Photobacterium profundum SS9]
gi|46914103|emb|CAG20883.1| hypothetical Flp pilus assembly protein TadC [Photobacterium
profundum SS9]
Length = 283
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 97/183 (53%), Gaps = 7/183 (3%)
Query: 142 LEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIK--RAWPDALDLLLICVESGIS 199
L + Q +GAV +I + P + +S ++K+ +K R P LD++ +CV++G++
Sbjct: 100 LSFTNQAAIGAVAMIAIL--LVPEMVLS--MRKKALILKTSRQLPYMLDMMSVCVQTGMT 155
Query: 200 IDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALI 259
I+ AL ++ ++ L + T A+ + + + A R VR+ T LI
Sbjct: 156 IEAALTYLSTELEAFDRDLCFHIKKT-ADSARVKGLEKALIELSERIPTPDVRSFTLTLI 214
Query: 260 QSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAI 319
Q+ +YGTSI + L L + R +++ E+K L K++VP+I+ + ++++I+ P +
Sbjct: 215 QNLQYGTSIANVLSALAEDMRKMQVLTMEEKIGKLAAKMSVPLILLIMFPIVILILAPGM 274
Query: 320 LSI 322
+ +
Sbjct: 275 MQM 277
>gi|238027558|ref|YP_002911789.1| type II secretion system protein [Burkholderia glumae BGR1]
gi|237876752|gb|ACR29085.1| Type II secretion system protein [Burkholderia glumae BGR1]
Length = 330
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 58/234 (24%), Positives = 105/234 (44%), Gaps = 7/234 (2%)
Query: 90 KAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLR 149
K ++ DE+ L G+ S + LVVRL I L L I+ + ++ F L
Sbjct: 96 KQLVADED-RKLLEQCGYVEARSRGLFLVVRLACAI-GLPLAILPFLTHGGPGKWLFGL- 152
Query: 150 VGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAE 209
L GF P V++ R+ S+ P +D+L + G+S+DQ+++ +
Sbjct: 153 ----FLALAAGFMLPKVYVRRRAAARRESVADEMPLFVDMLRLLQGVGLSLDQSMQVITH 208
Query: 210 DIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIG 269
D LS E+ + + + R+ + + +R + LIQ D++G ++
Sbjct: 209 DFTSMLPVLSWELGVAQRQFAAGRTREQSLARLTTSFDNEDLRAIVRLLIQVDKHGGAVQ 268
Query: 270 DSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSII 323
+ LR+ R R ++ L K+T MI+ LP L++V GP I++++
Sbjct: 269 EPLRLFGDRLREGRRATLRERIGRLTVKMTGVMIVTLLPALLIVTAGPGIMTVV 322
>gi|221197785|ref|ZP_03570831.1| type II secretion system protein [Burkholderia multivorans CGD2M]
gi|221204657|ref|ZP_03577674.1| type II secretion system protein [Burkholderia multivorans CGD2]
gi|221213135|ref|ZP_03586111.1| type II secretion system protein [Burkholderia multivorans CGD1]
gi|221167348|gb|EED99818.1| type II secretion system protein [Burkholderia multivorans CGD1]
gi|221175514|gb|EEE07944.1| type II secretion system protein [Burkholderia multivorans CGD2]
gi|221181717|gb|EEE14118.1| type II secretion system protein [Burkholderia multivorans CGD2M]
Length = 330
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 83/171 (48%)
Query: 159 VGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPL 218
VGF P ++I R+ S+ P +D+L + G+S+DQ+L+ V D G L
Sbjct: 159 VGFMLPKLYIRRRAAARRQSVGNELPLLVDMLRLLQGVGLSLDQSLQVVTNDFRGMLPVL 218
Query: 219 SEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSE 278
S E+ + + + R+ + + + + +R + +IQ D++G ++ + L+
Sbjct: 219 SSEVGIAQRQFAAGRTREQSLQRLSSGFDNEDLRAVVRLMIQVDKHGGAVQEPLKQFGDR 278
Query: 279 TRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMKDH 329
R R ++ L K+T M++ LP L++V GP +L+++ + H
Sbjct: 279 LRETRRALLRERIGRLTVKMTGVMVLTLLPALLIVTAGPGMLAVMRALSPH 329
>gi|307133501|dbj|BAJ19013.1| TadC [Aggregatibacter actinomycetemcomitans]
Length = 288
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 62/268 (23%), Positives = 131/268 (48%), Gaps = 18/268 (6%)
Query: 56 RKQQITSLQ-KDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLN 114
RK+ IT + KD S + SK +++ L+ +L++ N + L+ G +
Sbjct: 33 RKEIITGERPKDQDSDEVAKNKSK------QQIELELLLINNNPI--LKVLGIIDKN--- 81
Query: 115 ILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQK 174
+++ + I+ L+ G+ +++ L +G + ++ V P V I ++++
Sbjct: 82 ----IKVKLLIMLLLFGVYYLYSLTDEATDSSSLLLGFLTIL-IVTIVVPGVLIGSILKA 136
Query: 175 RQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPN 234
+ I +DL+ + V++GISI+ AL++VA D + L+ ML I + S +
Sbjct: 137 KIKKIMNDLAGFIDLVAVNVQTGISIEAALKQVATDFKTLNPDLTYVMLRIIRK-SEITG 195
Query: 235 RQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASL 294
A ++ +R + QS +G+SI L L ++ R +L+ E+K +L
Sbjct: 196 MSQALQDLSVSLPTTEIRMFCTVMQQSLNFGSSIYHQLIQLSTDIREIQLLAIEEKLGTL 255
Query: 295 GPKLTVPMIIFFLPVLILVIIGPAILSI 322
K+++P+I+F + +I++I+ P ++ +
Sbjct: 256 SAKMSIPLILFIMFPIIILILAPGVMRV 283
>gi|300694107|ref|YP_003750080.1| type II secretion system protein [Ralstonia solanacearum PSI07]
gi|299076144|emb|CBJ35457.1| Type II secretion system protein [Ralstonia solanacearum PSI07]
Length = 324
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 55/239 (23%), Positives = 108/239 (45%), Gaps = 16/239 (6%)
Query: 93 LVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGA 152
+V E L A G+ E + + R+++P + ++G+++ K L + F
Sbjct: 90 IVTEEDRKLLEACGYYGEQARTVFGGTRILLPPLLCVVGVLYAGELGKALLWGFA----- 144
Query: 153 VILIGY-VGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDI 211
G+ +G+ AP ++ + R+ + P +D+L + G+SIDQ+L+ +A +
Sbjct: 145 ----GFALGYLAPKWLLARRKESRRRRVDDELPAMVDMLRLLQGVGLSIDQSLQVIANEF 200
Query: 212 GGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDS 271
G L+ E + + R+ + ++ L Q DR+G ++ +
Sbjct: 201 HGMLPVLAGEFGRANQQFASGRPREQTLLRIARLFDNEDLKGLITLLTQVDRFGGAVQEP 260
Query: 272 LR---VLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
LR V + E R RL E + L K+TV M++ LP L+++ GP +S+ ++
Sbjct: 261 LRQFGVRLQENRRSRLKE---RVGKLTVKMTVVMVLTLLPALLIITAGPGFMSVTRSLN 316
>gi|73539235|ref|YP_299602.1| type II secretion system protein [Ralstonia eutropha JMP134]
gi|72122572|gb|AAZ64758.1| type II secretion system protein [Ralstonia eutropha JMP134]
Length = 344
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 62/260 (23%), Positives = 115/260 (44%), Gaps = 17/260 (6%)
Query: 69 SSRLRTR-DSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIF 127
+RL R D+ LR L +A++ E I+ L G+ + I +RL VP++
Sbjct: 87 GARLGGRVDAHWLRWLDSPLG-RAVVTAEEIL-LLEQCGWHGLRARAIFGALRLNVPVLL 144
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGY----VGFCAPSVWISNLVQKRQSSIKRAW 183
+ W G + A + G+ V + AP ++ Q R S++
Sbjct: 145 ALCAAAWHVGQG----------LAASLAWGFATFAVSYLAPKHYLRRRAQARLRSVEDEL 194
Query: 184 PDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFY 243
P +D+L + G+SIDQ+L+ + + GG L E+ L+ + + +R+
Sbjct: 195 PIVIDMLRLLQGVGLSIDQSLQIIVSEFGGMLRVLGPELALSNQQFASGRSREQTLLRIG 254
Query: 244 NRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMI 303
+ +++ L Q DR+G ++ + LR+ + R + + L K+T M+
Sbjct: 255 RLFDSENLKSLITLLTQVDRHGGAVQEPLRLFGQRMQEARKSRMKDEIGRLTVKMTAVMV 314
Query: 304 IFFLPVLILVIIGPAILSII 323
+ LPVL+++ GP L +I
Sbjct: 315 VSMLPVLLIITAGPGFLGVI 334
>gi|283787697|ref|YP_003367562.1| tight adherence protein C [Citrobacter rodentium ICC168]
gi|282951151|emb|CBG90842.1| putative tight adherence protein C [Citrobacter rodentium ICC168]
Length = 283
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/154 (29%), Positives = 83/154 (53%), Gaps = 3/154 (1%)
Query: 171 LVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELS 230
++ R I P +D++ ICV+SG++I+ +R +AE+ + +S + TI ++
Sbjct: 126 IIDSRVRRICNDLPYIIDIMAICVQSGMTIENTIRYLAENTETINPDISVLLARTIMKME 185
Query: 231 FLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKK 290
+ A + YN +R L QS ++G+SI L L E R +L+ ++K
Sbjct: 186 -VSGMSEALDLLYNEVPSQEIRMLASTLQQSIKFGSSIYLLLLDLSREIREMQLLAIDEK 244
Query: 291 AASLGPKLTVPMIIFFL-PVLILVIIGPAILSII 323
+SL K+++PMII + P+L+LV GP ++ I+
Sbjct: 245 ISSLAAKMSLPMIICIMFPILVLV-AGPGVIRIV 277
>gi|33596530|ref|NP_884173.1| hypothetical protein BPP1912 [Bordetella parapertussis 12822]
gi|33566299|emb|CAE37212.1| putative membrane protein [Bordetella parapertussis]
Length = 298
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 67/135 (49%), Gaps = 4/135 (2%)
Query: 184 PDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAEL-SFLPNRQVAFENF 242
P LDL+ +C E+G+ + AL++ A G PL E ++ + ++ + +P RQ A +
Sbjct: 157 PFILDLMTLCAEAGLGMHGALQQAASH--GPPGPLRELLVQALCDMRAGMPRRQ-AMQAL 213
Query: 243 YNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPM 302
R VR AL +D G S+G LR L + R+ER AE+ A K+ +P+
Sbjct: 214 AARADSPPVRAWVGALAHADAQGMSLGPMLRGLATRYRAERHQRAERLAMEAPVKMLLPL 273
Query: 303 IIFFLPVLILVIIGP 317
I P +V+ P
Sbjct: 274 IACIFPCTFIVLAFP 288
>gi|33601083|ref|NP_888643.1| hypothetical protein BB2100 [Bordetella bronchiseptica RB50]
gi|33575518|emb|CAE32596.1| putative membrane protein [Bordetella bronchiseptica RB50]
Length = 298
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 67/135 (49%), Gaps = 4/135 (2%)
Query: 184 PDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAEL-SFLPNRQVAFENF 242
P LDL+ +C E+G+ + AL++ A G PL E ++ + ++ + +P RQ A +
Sbjct: 157 PFILDLMTLCAEAGLGMHGALQQAASH--GPPGPLRELLVQALCDMRAGMPRRQ-AMQAL 213
Query: 243 YNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPM 302
R VR AL +D G S+G LR L + R+ER AE+ A K+ +P+
Sbjct: 214 AARADSPPVRAWVGALAHADAQGMSLGPMLRGLATRYRAERHQRAERLAMEAPVKMLLPL 273
Query: 303 IIFFLPVLILVIIGP 317
I P +V+ P
Sbjct: 274 IACIFPCTFIVLAFP 288
>gi|149188841|ref|ZP_01867131.1| hypothetical Flp pilus assembly protein TadC [Vibrio shilonii AK1]
gi|148837261|gb|EDL54208.1| hypothetical Flp pilus assembly protein TadC [Vibrio shilonii AK1]
Length = 283
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 80/144 (55%), Gaps = 1/144 (0%)
Query: 179 IKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVA 238
I R P LD++ +CV++G++I+ + + +++ LS ++ T ++ + + A
Sbjct: 134 ISRNLPYVLDIMSVCVQTGMTIEASFDYLHKELAAFDSDLSYQIKKT-SDAGKIHGIEKA 192
Query: 239 FENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKL 298
+ NR V++ +IQ+ +YGTS+ + L L + R +L++ E+K L K+
Sbjct: 193 LNDLNNRLPAPEVQSFVLTIIQNLQYGTSVANILSDLAEDMRRIQLLKVEEKVGKLSAKM 252
Query: 299 TVPMIIFFLPVLILVIIGPAILSI 322
+VP+I+ + ++++I+ P ++ +
Sbjct: 253 SVPLILLIMFPIVILILAPGVMQL 276
>gi|254381954|ref|ZP_04997317.1| integral membrane protein [Streptomyces sp. Mg1]
gi|194340862|gb|EDX21828.1| integral membrane protein [Streptomyces sp. Mg1]
Length = 297
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/155 (30%), Positives = 79/155 (50%), Gaps = 8/155 (5%)
Query: 167 WIS----NLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEM 222
WI + ++ R+ I+R PD LD+L + V +G+ AL RVA+ G P S+E+
Sbjct: 130 WIEFGLWSAIRIRRDHIERTLPDFLDVLAVVVSAGLGFRPALERVADKYEG---PWSDEI 186
Query: 223 LLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSE 282
+T+ +++ +R+ AF+ R + V AL Q + G+ I ++L L + R
Sbjct: 187 RITLQQMTMGVSRRQAFDELRRRNDSEQVAQFVTALQQGEELGSPIVETLIALAEDMRRT 246
Query: 283 RLMEAEKKAASLGPKLTVPMIIFFLP-VLILVIIG 316
A ++AA PK T + F LP LIL++ G
Sbjct: 247 DAQNARRRAARAVPKATFAVTTFMLPGTLILLVCG 281
>gi|148975967|ref|ZP_01812756.1| hypothetical Flp pilus assembly protein TadC [Vibrionales bacterium
SWAT-3]
gi|145964712|gb|EDK29965.1| hypothetical Flp pilus assembly protein TadC [Vibrionales bacterium
SWAT-3]
Length = 280
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/173 (23%), Positives = 91/173 (52%), Gaps = 5/173 (2%)
Query: 154 ILIGYVGFCAPSVWISNLVQKRQ----SSIKRAWPDALDLLLICVESGISIDQALRRVAE 209
+L+ V A V L+Q R+ S P LD++ +CV++G++I+ +L + +
Sbjct: 105 LLVVIVSLIAVIVVPDTLLQMRRKMLISKTSAQLPYLLDMMSVCVQTGMTIEASLVYLGK 164
Query: 210 DIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIG 269
++ L ++ T ++ + + + A + R +R+ +IQ+ +YGTS+
Sbjct: 165 ELAEFDSDLCYQIKRT-SDSAKIHGVEKALNDLTERIPTPAIRSFVLTIIQNLQYGTSVA 223
Query: 270 DSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
+L L + R +++ E+K L K++VP+I+F + ++++I+ P+I+ +
Sbjct: 224 QTLSDLAEDMRKVQILTVEEKVGKLSAKMSVPLILFIMFPIVILILAPSIMQM 276
>gi|182436318|ref|YP_001824037.1| putative integral membrane protein [Streptomyces griseus subsp.
griseus NBRC 13350]
gi|326776948|ref|ZP_08236213.1| Type II secretion system F domain protein [Streptomyces cf. griseus
XylebKG-1]
gi|178464834|dbj|BAG19354.1| putative integral membrane protein [Streptomyces griseus subsp.
griseus NBRC 13350]
gi|326657281|gb|EGE42127.1| Type II secretion system F domain protein [Streptomyces cf. griseus
XylebKG-1]
Length = 295
Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 69/139 (49%), Gaps = 5/139 (3%)
Query: 161 FCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSE 220
+ +W + ++ R+ I+R PD LD+L + V +G+ QAL RVAE G P S+
Sbjct: 129 WVEAGIW--SAIRVRREHIERTLPDFLDVLAVVVSAGLGFRQALDRVAEKYEG---PWSD 183
Query: 221 EMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETR 280
E+ +T+ ++ +R+ AFE R + V L Q + G I ++L + ++ R
Sbjct: 184 ELRITLRQMDMGVSRRQAFEELRRRNDSEQVAMFVTTLQQGEELGAPIVETLIQIANDMR 243
Query: 281 SERLMEAEKKAASLGPKLT 299
A +KAA PK T
Sbjct: 244 RTDAQNARRKAARAVPKAT 262
>gi|239943899|ref|ZP_04695836.1| putative integral membrane protein [Streptomyces roseosporus NRRL
15998]
gi|239990353|ref|ZP_04711017.1| putative integral membrane protein [Streptomyces roseosporus NRRL
11379]
gi|291447362|ref|ZP_06586752.1| integral membrane protein [Streptomyces roseosporus NRRL 15998]
gi|291350309|gb|EFE77213.1| integral membrane protein [Streptomyces roseosporus NRRL 15998]
Length = 295
Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 69/139 (49%), Gaps = 5/139 (3%)
Query: 161 FCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSE 220
+ +W + ++ R+ I+R PD LD+L + V +G+ QAL RVAE G P S+
Sbjct: 129 WVEAGIW--SAIRVRREHIERTLPDFLDVLAVVVSAGLGFRQALDRVAEKYEG---PWSD 183
Query: 221 EMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETR 280
E+ +T+ ++ +R+ AFE R + V L Q + G I ++L + ++ R
Sbjct: 184 ELRITLRQMDMGVSRRQAFEELRRRNDSEQVAMFVTTLQQGEELGAPIVETLIQIANDMR 243
Query: 281 SERLMEAEKKAASLGPKLT 299
A +KAA PK T
Sbjct: 244 RTDAQNARRKAAKAVPKAT 262
>gi|15602712|ref|NP_245784.1| hypothetical protein PM0847 [Pasteurella multocida subsp. multocida
str. Pm70]
gi|12721156|gb|AAK02931.1| TadC [Pasteurella multocida subsp. multocida str. Pm70]
Length = 284
Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 91/173 (52%), Gaps = 2/173 (1%)
Query: 150 VGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAE 209
+G I++ ++ P + + +++ + I P +DL+ + V++GISID AL++VA
Sbjct: 109 IGLSIILVFI-IVIPGILTNAILKAKVKKIMVDLPGFIDLVAVNVQTGISIDAALKQVAI 167
Query: 210 DIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIG 269
D + L+ ML I + S L A ++ +R L QS +G+SI
Sbjct: 168 DFKKLNPDLTYVMLRIIRK-SELTGLSQALQDLSISLPTTEIRMFCTVLQQSLNFGSSIY 226
Query: 270 DSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
L L ++ R +L+ E+K +L K+++P+I+F + +I++I+ P I+ +
Sbjct: 227 SHLIQLSADIREIQLLIIEEKLGTLSAKMSIPLILFIMFPIIILILAPGIMRV 279
>gi|115351460|ref|YP_773299.1| type II secretion system protein [Burkholderia ambifaria AMMD]
gi|115281448|gb|ABI86965.1| type II secretion system protein [Burkholderia ambifaria AMMD]
Length = 337
Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 84/170 (49%)
Query: 159 VGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPL 218
VGF P +++ KR+ ++ P +D+L + G+S+DQ+++ V D G L
Sbjct: 165 VGFMVPKLYLRRRAAKRRQAVTDELPLLVDMLRLLQGVGLSLDQSIQVVTNDFKGMMPVL 224
Query: 219 SEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSE 278
S EM + + + R+ + + + + + +R + LIQ D++G ++ + L+
Sbjct: 225 SSEMEIAQRQFAAGRTREQSLQRLSSGFENEDLRAIVRLLIQVDKHGGAVQEPLKQFGER 284
Query: 279 TRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMKD 328
R R ++ L K+T MI+ LP L++V GP ++S++ +
Sbjct: 285 LREARRAMLRERIGRLTVKMTGVMIVTLLPALLIVTAGPGMISVLRALNQ 334
>gi|307295329|ref|ZP_07575168.1| Type II secretion system F domain protein [Sphingobium
chlorophenolicum L-1]
gi|306878832|gb|EFN10051.1| Type II secretion system F domain protein [Sphingobium
chlorophenolicum L-1]
Length = 287
Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 68/134 (50%), Gaps = 2/134 (1%)
Query: 195 ESGISIDQALRRVAEDIGGQSVPLSEEML-LTIAELSFLPNRQVAFENFYNRTQMDCVRN 253
ESG+S+DQ R +A D +VP ++ + +A+L +A + + R + R
Sbjct: 151 ESGVSLDQCFRSIARD-EAIAVPHHARLIAMLVADLERGMRYDLALDRWAARVAVSGARE 209
Query: 254 ATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILV 313
Q+ G + +LR V E R+M A + + ++ V MI+FF+P L +V
Sbjct: 210 LAALFRQALFQGVELAPALREFVREFTQRRVMRAREAMGGITVRMVVLMILFFMPALFVV 269
Query: 314 IIGPAILSIIDTMK 327
+ GP +++I DT++
Sbjct: 270 LGGPPVVAIFDTLR 283
>gi|170701756|ref|ZP_02892692.1| type II secretion system protein [Burkholderia ambifaria IOP40-10]
gi|170133339|gb|EDT01731.1| type II secretion system protein [Burkholderia ambifaria IOP40-10]
Length = 337
Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 84/169 (49%)
Query: 159 VGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPL 218
VGF P +++ KR+ ++ P +D+L + G+S+DQ+++ V D G L
Sbjct: 165 VGFMVPKLYLRRRAAKRRQAVTDELPLLVDMLRLLQGVGLSLDQSIQVVTNDFKGMMPVL 224
Query: 219 SEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSE 278
S EM + + + R+ + + + + + +R + LIQ D++G ++ + L+
Sbjct: 225 SSEMEIAQRQFAAGRTREQSLQRLSSGFENEDLRAIVRLLIQVDKHGGAVQEPLKQFGER 284
Query: 279 TRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
R R ++ L K+T MI+ LP L++V GP ++S++ +
Sbjct: 285 LREARRAMLRERIGRLTVKMTGVMIVTLLPALLIVTAGPGMISVLRALN 333
>gi|303238717|ref|ZP_07325250.1| Type II secretion system F domain protein [Acetivibrio
cellulolyticus CD2]
gi|302593836|gb|EFL63551.1| Type II secretion system F domain protein [Acetivibrio
cellulolyticus CD2]
Length = 292
Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 83/152 (54%), Gaps = 3/152 (1%)
Query: 172 VQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSF 231
V+KR++S++ +PD L+ L + + +G+++ +A ++ D SV L EE+ + +A++
Sbjct: 140 VKKRRTSMQLDFPDFLNKLTLLINAGMTVQRAWEKIVTDNKKNSV-LYEELSIAVADIRA 198
Query: 232 LPNRQVAFENFYNRTQMDCVRNATQALIQSDRYG-TSIGDSLRVLVSETRSERLMEAEKK 290
+ A+E+F R ++ + ++Q+ + G T + LR+ SE R A +
Sbjct: 199 GKSEMSAYEDFAKRCRIPEITKFVSVVLQNIKKGNTELVSILRLQASECWEMRKRAATRL 258
Query: 291 AASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
K+ PM+I F+ +LI+V + PAI ++
Sbjct: 259 GEEASTKMLFPMMIMFVAILIIVTV-PAIFAM 289
>gi|312882149|ref|ZP_07741898.1| hypothetical protein VIBC2010_06159 [Vibrio caribbenthicus ATCC
BAA-2122]
gi|309370195|gb|EFP97698.1| hypothetical protein VIBC2010_06159 [Vibrio caribbenthicus ATCC
BAA-2122]
Length = 280
Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 60/262 (22%), Positives = 125/262 (47%), Gaps = 20/262 (7%)
Query: 67 SASSRLRTRDSKSLRNFVK--KLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVP 124
+ SSR +R ++ F K + L+ L+D I N+ A F L IL+VV ++
Sbjct: 37 TQSSRTPSRVNRFFVRFGKEHRHELEKKLIDAGIYNR-ELAKFYFPAKLMILIVVTSLIL 95
Query: 125 IIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWP 184
I + + +FG L +G ++L P + + I P
Sbjct: 96 ISDMTMQNQLMFGILNL--------IGVILL--------PDTLLHIKGKLLIGKISAQLP 139
Query: 185 DALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYN 244
LD++ +C+++G++I+ +L + E++ L ++ T ++ + + + A +F +
Sbjct: 140 YLLDMMAVCIQTGMTIEASLVYLGEELEEFDKDLCYQIQRT-SDSAKIHGLEKALNDFAD 198
Query: 245 RTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMII 304
R VR+ +IQ+ +YGTS+ L L + R +++ E+K L K+++P+I+
Sbjct: 199 RVPTTAVRSFVLTIIQNLQYGTSVAQVLGDLSEDMRKVQILTVEEKVGKLSAKMSLPLIL 258
Query: 305 FFLPVLILVIIGPAILSIIDTM 326
+ ++++I+ P I+ ++ M
Sbjct: 259 LIMFPIVVLILAPGIMQMMINM 280
>gi|302536567|ref|ZP_07288909.1| integral membrane protein [Streptomyces sp. C]
gi|302445462|gb|EFL17278.1| integral membrane protein [Streptomyces sp. C]
Length = 292
Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 80/155 (51%), Gaps = 8/155 (5%)
Query: 167 WIS----NLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEM 222
WI + ++ R+ +I+R PD LD+L + V +G+ QAL RVA G P ++E+
Sbjct: 125 WIEAGLWSAIRIRRDNIERTLPDFLDVLAVVVSAGLGFRQALERVAGKYEG---PWADEI 181
Query: 223 LLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSE 282
+T+ ++ +R+ AF+ R + V AL Q + G+ I ++L + + R
Sbjct: 182 RITLQQMDMGVSRRQAFDELRRRNDSEQVAQFVTALQQGEELGSPIVETLIAIAEDMRRT 241
Query: 283 RLMEAEKKAASLGPKLTVPMIIFFLP-VLILVIIG 316
A ++AA PK T + +F LP LIL++ G
Sbjct: 242 DAQNARRRAARAVPKATFAVTMFMLPGTLILLVCG 276
>gi|300697738|ref|YP_003748399.1| type II secretion system protein [Ralstonia solanacearum CFBP2957]
gi|299074462|emb|CBJ54012.1| Type II secretion system protein [Ralstonia solanacearum CFBP2957]
Length = 326
Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 57/243 (23%), Positives = 108/243 (44%), Gaps = 14/243 (5%)
Query: 88 NLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQ 147
L +V E L G+ E + + R+++P +LG+++ + K L + F
Sbjct: 87 GLGQRIVTEEDRRLLEECGYYGEQARTVFGGTRILLPPFLCVLGVLYAGAFWKALLWGF- 145
Query: 148 LRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRV 207
A +GY+G P ++ + R+ + P +D+L + G+SIDQ+L+ +
Sbjct: 146 ----AGFALGYLG---PKWLLTRRKESRRRRVDDELPVMVDMLRLLQGVGLSIDQSLQVI 198
Query: 208 AEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTS 267
A + G L+ E + + R+ + ++ L Q DR+G +
Sbjct: 199 ANEFYGMLPVLAGEFGRANQQFASGRPREQTLLRIAKMFDSEDLKGLITLLTQVDRFGGA 258
Query: 268 IGDSLR---VLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIID 324
+ + LR V + E R RL E + L K+TV M++ LP L+++ GP +S+
Sbjct: 259 VQEPLRQFGVRLQENRRSRLKE---RVGKLTVKMTVVMVLTLLPALLIITAGPGFVSVTR 315
Query: 325 TMK 327
++
Sbjct: 316 SLH 318
>gi|170022929|ref|YP_001719434.1| type II secretion system protein [Yersinia pseudotuberculosis
YPIII]
gi|169749463|gb|ACA66981.1| type II secretion system protein [Yersinia pseudotuberculosis
YPIII]
Length = 277
Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 90/170 (52%), Gaps = 9/170 (5%)
Query: 163 APSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEM 222
AP + I N + KR +++ ++ P +D+ CV+SG++I+ +L + + L M
Sbjct: 112 APRMIIKNALTKRTNTLLKSLPFFIDITAACVQSGMTIENSLNYTTQKFQTINTDLCLIM 171
Query: 223 --LLTIAELSFLPN--RQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSE 278
+ AE++ L N +++ + + +M C L S +G+++ + L L +
Sbjct: 172 SKVTKRAEINGLENAIKELQYYSPAIEMKMFC-----STLQYSLSFGSTVYEQLTHLSQD 226
Query: 279 TRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMKD 328
R +L+ E+ + L KLT+P+ +F L +L++I P+IL +++ +K+
Sbjct: 227 MREMQLLMTEESISKLSTKLTLPLFLFILIPFVLLVISPSILELLNYVKN 276
>gi|172060499|ref|YP_001808151.1| type II secretion system protein [Burkholderia ambifaria MC40-6]
gi|171993016|gb|ACB63935.1| type II secretion system protein [Burkholderia ambifaria MC40-6]
Length = 330
Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 63/304 (20%), Positives = 127/304 (41%), Gaps = 32/304 (10%)
Query: 41 LEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAI-------- 92
L++RM ++ R + +D AS++ TR + + + +L+ +
Sbjct: 43 LDRRMAALEAAR-------VPKTAEDGASAKPDTRGRQRIERMLDRLSAAGMRWLDTGFG 95
Query: 93 --LVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRV 150
+V E L G+ + + L R+ I +L I+ G+ K
Sbjct: 96 KHIVAEEDRRILEQCGYVDTRTRGLFLSARIACGIALPLLFAIFASGHLK---------- 145
Query: 151 GAVILIGY-----VGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALR 205
G +IG +GF P + + R+ S+ P +D+L + G+S+DQ+L+
Sbjct: 146 GRHWMIGTFAAFALGFMLPKLVLRRRAAARRQSVVDELPLFVDMLRLLQGVGLSLDQSLQ 205
Query: 206 RVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYG 265
V D G LS E+ + + + R + + + + +R + ++Q D++G
Sbjct: 206 VVTNDFRGMMPVLSSEVGIAQRQFAAGRTRDQSMQRLSSGFDNEDLRAIARLVVQVDKHG 265
Query: 266 TSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDT 325
++ + L+ R R ++ L K+T M++ LP L++V GP L+++
Sbjct: 266 GAVQEPLKQFGDRLRETRRAMLRERIGRLTVKMTGVMVLTLLPALLIVTAGPGFLAVMHA 325
Query: 326 MKDH 329
+ H
Sbjct: 326 LSAH 329
>gi|149188858|ref|ZP_01867148.1| hypothetical Flp pilus assembly protein TadC [Vibrio shilonii AK1]
gi|148837278|gb|EDL54225.1| hypothetical Flp pilus assembly protein TadC [Vibrio shilonii AK1]
Length = 282
Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 78/139 (56%), Gaps = 1/139 (0%)
Query: 184 PDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFY 243
P LD++ +CV++G++I+ AL + +++ L ++ T ++ + + + A +
Sbjct: 139 PYLLDMMSVCVQTGMTIEAALIYLGKELAEFDSDLCYQVKRT-SDSAKIHGLEKALNDLS 197
Query: 244 NRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMI 303
+R VR+ +IQ+ +YGTS+ L L + R +++ E+K L K+++P+I
Sbjct: 198 DRIPTPAVRSFVLTIIQNLQYGTSVAQVLSDLAEDMRKVQILAVEEKVGKLSAKMSIPLI 257
Query: 304 IFFLPVLILVIIGPAILSI 322
+F + ++++I+ P I+ +
Sbjct: 258 LFIMFPIVILILAPGIMQM 276
>gi|254245561|ref|ZP_04938882.1| Flp pilus assembly protein TadC [Burkholderia cenocepacia PC184]
gi|124870337|gb|EAY62053.1| Flp pilus assembly protein TadC [Burkholderia cenocepacia PC184]
Length = 330
Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 47/215 (21%), Positives = 95/215 (44%), Gaps = 21/215 (9%)
Query: 121 LVVPIIFLIL------GIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQK 174
+ +P++F I G IW+ G L +GF P +++
Sbjct: 130 IALPLLFAICASGRMKGSIWMVGMCAALG---------------LGFMLPKLYVQRRAAS 174
Query: 175 RQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPN 234
R+ S+ P +D+L + G+S+DQ+L+ V D G LS E+ + + +
Sbjct: 175 RRQSVVDELPLLVDMLRLLQGVGLSLDQSLQVVTNDFRGMLPVLSSEVGIAQRQFAAGRT 234
Query: 235 RQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASL 294
R+ + + + + +R + +IQ D++G ++ + L+ R R ++ L
Sbjct: 235 REQSLQRLSSGFDNEDLRAIVRLMIQVDKHGGAVQEPLKQFGDRLRETRRAMLRERIGRL 294
Query: 295 GPKLTVPMIIFFLPVLILVIIGPAILSIIDTMKDH 329
K+T M++ LP L++V GP +L+++ +
Sbjct: 295 TVKMTGVMVLTLLPALLIVTAGPGMLAVMRALSSQ 329
>gi|307548792|dbj|BAJ19114.1| TadC [Aggregatibacter actinomycetemcomitans]
gi|307548807|dbj|BAJ19128.1| TadC [Aggregatibacter actinomycetemcomitans]
Length = 288
Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 61/273 (22%), Positives = 133/273 (48%), Gaps = 28/273 (10%)
Query: 56 RKQQITSLQ-KDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLN 114
RK+ IT + KD S + SK +++ L+ +L++ N + L+ G +
Sbjct: 33 RKEVITGERPKDQDSDEVAKNKSK------QQIELELLLINNNPI--LKVLGIIDKN--- 81
Query: 115 ILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCA-----PSVWIS 169
+++ + I+ L+ G+ +++ + + + +L+G++ P V I
Sbjct: 82 ----IKVKLLIMLLLFGVYYLYSFTD------ETTDSSSLLLGFLTILIITIVIPGVLIG 131
Query: 170 NLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAEL 229
++++ + I +DL+ + V++GISI+ AL++VA D + L+ ML I +
Sbjct: 132 SILKAKIKKIMNDLAGFIDLVAVNVQTGISIEAALKQVATDFKTLNPDLTYVMLRIIRK- 190
Query: 230 SFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEK 289
S + A ++ +R + QS +G+SI L L ++ R +L+ E+
Sbjct: 191 SEITGMSQALQDLSVSLPTTEIRMFCTVMQQSLNFGSSIYHQLIQLSTDIREIQLLAIEE 250
Query: 290 KAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
K +L K+++P+I+F + +I++I+ P ++ +
Sbjct: 251 KLGTLSAKMSIPLILFIMFPIIILILAPGVMRV 283
>gi|296158799|ref|ZP_06841628.1| Type II secretion system F domain protein [Burkholderia sp. Ch1-1]
gi|295891004|gb|EFG70793.1| Type II secretion system F domain protein [Burkholderia sp. Ch1-1]
Length = 336
Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 68/238 (28%), Positives = 106/238 (44%), Gaps = 13/238 (5%)
Query: 93 LVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGA 152
+V E L GF + + LV RLV ++ +L G LE P V
Sbjct: 103 IVAEEDRRLLEQCGFVDTRTRGLFLVARLVGALVLPVLAGTLTRGQ---LEGPRY--VAL 157
Query: 153 VILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIG 212
VI+ GF P + KR++ + P +DLL + G+S+DQ+L+ V D
Sbjct: 158 VIIAAMAGFMLPKFALRRRAGKRRNGVVDELPLLVDLLRLLQGVGLSLDQSLQVVVNDFR 217
Query: 213 GQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR--TQMDC--VRNATQALIQSDRYGTSI 268
G L+ E L IA+ F R E NR T D +R + L+Q DR+G ++
Sbjct: 218 GMLPVLAGE--LEIAQRQFAAGR--TREQSLNRLATSYDNEDLRAVMRLLVQVDRHGGAV 273
Query: 269 GDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
+ L+ R R ++ L K+T MI+ LP L++V GP +L++ ++
Sbjct: 274 QEPLKQFGDRLRETRRAMLRERIGRLAVKMTGVMIVTLLPALMIVTAGPGVLAVQHSL 331
>gi|313835699|gb|EFS73413.1| type II secretion system F domain protein [Propionibacterium acnes
HL037PA2]
gi|314928370|gb|EFS92201.1| type II secretion system F domain protein [Propionibacterium acnes
HL044PA1]
gi|314970222|gb|EFT14320.1| type II secretion system F domain protein [Propionibacterium acnes
HL037PA3]
gi|328908049|gb|EGG27808.1| LOW QUALITY PROTEIN: Type II secretion system F domain protein
[Propionibacterium sp. P08]
Length = 301
Score = 63.2 bits (152), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 76/151 (50%), Gaps = 6/151 (3%)
Query: 161 FCAPSVWISNL---VQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVP 217
F P + + L V++R+ I + P +D+L + V +GI +ALR V+E GG P
Sbjct: 129 FIPPVIPLGKLTGDVKRRKEQIDQDLPSFMDVLAVTVTAGIGFRRALRTVSERYGG---P 185
Query: 218 LSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVS 277
L++E+ LT+ + + + AF +RT V A +QS+ G + D+L + +
Sbjct: 186 LADEIQLTLQHVDNGASMRQAFTALRDRTGSAAVDEFVSAYVQSEELGAPLVDTLNHIAA 245
Query: 278 ETRSERLMEAEKKAASLGPKLTVPMIIFFLP 308
+ R A ++A+ + P++++ +P
Sbjct: 246 DMRRSSAQAALQRASRIEPRVSLVTTTVMVP 276
>gi|46143337|ref|ZP_00204444.1| COG2064: Flp pilus assembly protein TadC [Actinobacillus
pleuropneumoniae serovar 1 str. 4074]
gi|126208032|ref|YP_001053257.1| tight adherence protein C [Actinobacillus pleuropneumoniae L20]
gi|126096824|gb|ABN73652.1| tight adherence protein C [Actinobacillus pleuropneumoniae serovar
5b str. L20]
Length = 281
Score = 63.2 bits (152), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 94/174 (54%), Gaps = 7/174 (4%)
Query: 152 AVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDI 211
AV+++ + F PS+ I +++ + I P +DL+ + V++GISI+ A ++VA D
Sbjct: 109 AVVVVLAIMF--PSITIGVILKSKIKRIMNDIPGFIDLVAVNVQTGISIEAAFKQVAIDF 166
Query: 212 GGQSVPLSEEMLLTI--AELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIG 269
+ L+ +L I AEL+ L A ++ +R + QS +G+S+
Sbjct: 167 EHLNADLTYVILRIIRKAELTSLST---ALQDMAISLPTKEIRMFCTVMQQSLNFGSSLY 223
Query: 270 DSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSII 323
+ L L ++ R +L+ E+K +L K+++P+I+F + +I++I+ P + ++
Sbjct: 224 EHLTQLSADIREMQLLVMEEKLGTLSAKMSIPLILFIMFPIIILIVAPGAMRVL 277
>gi|84385679|ref|ZP_00988710.1| hypothetical Flp pilus assembly protein TadC [Vibrio splendidus
12B01]
gi|84379659|gb|EAP96511.1| hypothetical Flp pilus assembly protein TadC [Vibrio splendidus
12B01]
Length = 280
Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 78/139 (56%), Gaps = 1/139 (0%)
Query: 184 PDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFY 243
P LD++ +CV++G++I+ AL + +++ L ++ T ++ + + + A +
Sbjct: 139 PYLLDMMSVCVQTGMTIEAALVYLGKELAEFDSDLCYQIKRT-SDSAKIHGLEKALNDLS 197
Query: 244 NRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMI 303
R VR+ +IQ+ +YGTS+ L L + R +++ E+K L K++VP+I
Sbjct: 198 ERIPTPPVRSFVLTIIQNLQYGTSVASVLSDLAEDMRKVQILTVEEKVGKLSAKMSVPLI 257
Query: 304 IFFLPVLILVIIGPAILSI 322
+F + ++++I+ P+I+ +
Sbjct: 258 LFIMFPIVILILAPSIMQM 276
>gi|165975969|ref|YP_001651562.1| Flp pilus assembly protein [Actinobacillus pleuropneumoniae serovar
3 str. JL03]
gi|190149860|ref|YP_001968385.1| tight adherence protein C [Actinobacillus pleuropneumoniae serovar
7 str. AP76]
gi|303251577|ref|ZP_07337751.1| tight adherence protein C [Actinobacillus pleuropneumoniae serovar
6 str. Femo]
gi|303252182|ref|ZP_07338350.1| tight adherence protein C [Actinobacillus pleuropneumoniae serovar
2 str. 4226]
gi|307245407|ref|ZP_07527495.1| hypothetical protein appser1_6120 [Actinobacillus pleuropneumoniae
serovar 1 str. 4074]
gi|307247522|ref|ZP_07529567.1| hypothetical protein appser2_5180 [Actinobacillus pleuropneumoniae
serovar 2 str. S1536]
gi|307249754|ref|ZP_07531732.1| hypothetical protein appser4_5560 [Actinobacillus pleuropneumoniae
serovar 4 str. M62]
gi|307252110|ref|ZP_07534009.1| hypothetical protein appser6_6280 [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
gi|307254362|ref|ZP_07536200.1| hypothetical protein appser9_6100 [Actinobacillus pleuropneumoniae
serovar 9 str. CVJ13261]
gi|307256569|ref|ZP_07538350.1| hypothetical protein appser10_5740 [Actinobacillus pleuropneumoniae
serovar 10 str. D13039]
gi|307258820|ref|ZP_07540552.1| hypothetical protein appser11_6180 [Actinobacillus pleuropneumoniae
serovar 11 str. 56153]
gi|307260999|ref|ZP_07542681.1| hypothetical protein appser12_5660 [Actinobacillus pleuropneumoniae
serovar 12 str. 1096]
gi|307263184|ref|ZP_07544805.1| hypothetical protein appser13_6060 [Actinobacillus pleuropneumoniae
serovar 13 str. N273]
gi|165876070|gb|ABY69118.1| Flp pilus assembly protein [Actinobacillus pleuropneumoniae serovar
3 str. JL03]
gi|189914991|gb|ACE61243.1| tight adherence protein C [Actinobacillus pleuropneumoniae serovar
7 str. AP76]
gi|302648965|gb|EFL79153.1| tight adherence protein C [Actinobacillus pleuropneumoniae serovar
2 str. 4226]
gi|302649575|gb|EFL79757.1| tight adherence protein C [Actinobacillus pleuropneumoniae serovar
6 str. Femo]
gi|306853748|gb|EFM85965.1| hypothetical protein appser1_6120 [Actinobacillus pleuropneumoniae
serovar 1 str. 4074]
gi|306856025|gb|EFM88183.1| hypothetical protein appser2_5180 [Actinobacillus pleuropneumoniae
serovar 2 str. S1536]
gi|306858169|gb|EFM90247.1| hypothetical protein appser4_5560 [Actinobacillus pleuropneumoniae
serovar 4 str. M62]
gi|306860410|gb|EFM92424.1| hypothetical protein appser6_6280 [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
gi|306862661|gb|EFM94617.1| hypothetical protein appser9_6100 [Actinobacillus pleuropneumoniae
serovar 9 str. CVJ13261]
gi|306864979|gb|EFM96881.1| hypothetical protein appser10_5740 [Actinobacillus pleuropneumoniae
serovar 10 str. D13039]
gi|306867171|gb|EFM99027.1| hypothetical protein appser11_6180 [Actinobacillus pleuropneumoniae
serovar 11 str. 56153]
gi|306869301|gb|EFN01096.1| hypothetical protein appser12_5660 [Actinobacillus pleuropneumoniae
serovar 12 str. 1096]
gi|306871546|gb|EFN03269.1| hypothetical protein appser13_6060 [Actinobacillus pleuropneumoniae
serovar 13 str. N273]
Length = 281
Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 94/174 (54%), Gaps = 7/174 (4%)
Query: 152 AVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDI 211
AV+++ + F PS+ I +++ + I P +DL+ + V++GISI+ A ++VA D
Sbjct: 109 AVVVVLAIMF--PSITIGVILKSKIKRIMNDIPGFIDLVAVNVQTGISIEAAFKQVAIDF 166
Query: 212 GGQSVPLSEEMLLTI--AELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIG 269
+ L+ +L I AEL+ L A ++ +R + QS +G+S+
Sbjct: 167 EHLNADLTYVILRIIRKAELTSL---SAALQDMAISLPTKEIRMFCTVMQQSLNFGSSLY 223
Query: 270 DSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSII 323
+ L L ++ R +L+ E+K +L K+++P+I+F + +I++I+ P + ++
Sbjct: 224 EHLTQLSADIREMQLLVMEEKLGTLSAKMSIPLILFIMFPIIILIVAPGAMRVL 277
>gi|17549304|ref|NP_522644.1| putative tight adherence TadC related transmembrane protein
[Ralstonia solanacearum GMI1000]
gi|17431556|emb|CAD18234.1| probable pilus assembly tadc transmembrane protein [Ralstonia
solanacearum GMI1000]
Length = 326
Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 52/239 (21%), Positives = 110/239 (46%), Gaps = 16/239 (6%)
Query: 93 LVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGA 152
+V E L G+ E + + R+++P + ++G+++ + + L + F
Sbjct: 92 IVTEEDRKLLEECGYYGEQARTVFGGTRILLPPLLCVVGVLYAASFREALLWGFA----- 146
Query: 153 VILIGY-VGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDI 211
G+ +G+ AP ++ + R+ + P +D+L + G+SIDQ+L+ +A +
Sbjct: 147 ----GFALGYLAPKWLLARRKESRRRRLDDELPVMVDMLRLLQGVGLSIDQSLQVIANEF 202
Query: 212 GGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDS 271
G L++E + + +R+ + ++ L Q DR+G ++ +
Sbjct: 203 HGMLPVLADEFGRANQQFASGRSREQTLLRIARLFDNEDLKGLITLLTQVDRFGGAVQEP 262
Query: 272 LR---VLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
LR + + E R RL E + L K+TV M++ LP L+++ GP +S+ ++
Sbjct: 263 LRQFGLRLQENRRSRLKE---RVGKLTVKMTVVMVLTLLPALLIITAGPGFMSVTRSLH 318
>gi|56460009|ref|YP_155290.1| Flp pilus assembly protein TadC [Idiomarina loihiensis L2TR]
gi|56179019|gb|AAV81741.1| Flp pilus assembly protein TadC [Idiomarina loihiensis L2TR]
Length = 237
Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 72/153 (47%), Gaps = 2/153 (1%)
Query: 170 NLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAEL 229
L K +I R PD DL+ + + SGI + AL +V+ + L+ E+ ++ L
Sbjct: 81 QLALKNNKAIVRQLPDFCDLISMMIASGIPLISALEKVSASCS--DLLLAREITSMLSRL 138
Query: 230 SFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEK 289
+ + R + + LI+ + GTS+ SLR ++ R + L AEK
Sbjct: 139 RRGTSFAQSMYELSERYDAKQIHEWSSMLIKGYQQGTSLTKSLRFYANQLRQDLLNSAEK 198
Query: 290 KAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
+A KL P++ F PV LVI+GP I+ I
Sbjct: 199 RAQEAPVKLLFPLVTCFFPVNFLVILGPVIVQI 231
>gi|257790636|ref|YP_003181242.1| type II secretion system protein [Eggerthella lenta DSM 2243]
gi|257474533|gb|ACV54853.1| type II secretion system protein [Eggerthella lenta DSM 2243]
Length = 288
Score = 62.8 bits (151), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 81/159 (50%), Gaps = 4/159 (2%)
Query: 164 PSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEML 223
P W+ + + + R PDALDL+ IC+ +G S + AL V + G E
Sbjct: 130 PQAWLLARRAEWRDELDRQLPDALDLMAICISAGSSFEGALASVGTRMDGAIA----EAF 185
Query: 224 LTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSER 283
+A+ + +R A +R Q++ + T +L+Q++R G+S+ D +R+ R+ER
Sbjct: 186 ARVAKEAAYSSRSEALLGLADRAQVNSITFFTASLVQAERAGSSLVDIIRMQAQSVRTER 245
Query: 284 LMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
+ + L K+ PM++ LP +I++++ P IL +
Sbjct: 246 RLRVDDMTNKLSTKMLFPMLLLMLPSIIMLMLAPMILQL 284
>gi|283778864|ref|YP_003369619.1| type II secretion system protein [Pirellula staleyi DSM 6068]
gi|283437317|gb|ADB15759.1| type II secretion system protein [Pirellula staleyi DSM 6068]
Length = 361
Score = 62.8 bits (151), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 62/225 (27%), Positives = 108/225 (48%), Gaps = 13/225 (5%)
Query: 102 LRAAGFRSEYSLNILLVVRLVVPIIFLIL-GIIWIFGYDKLLEYPFQ-LRVGAVILIGYV 159
LR AGF S ++ + R ++ + L+ G+I IF F+ L VGA I I
Sbjct: 90 LRQAGFYSRTAMASVYAYRFLLLVFPLVCAGLIAIFSPRS---QTFRILFVGAFIAIALS 146
Query: 160 GFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLS 219
P ++I +KR + I D LD+L +C+ G+ + +L VA+++ L+
Sbjct: 147 --IIPRLYIFFRRRKRLTEINNGLADMLDMLGMCLSGGMPLSASLDHVAKNLTNYPA-LA 203
Query: 220 EEMLLTI--AELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVS 277
+E+L+ AE+S L + A +F NR VR L + D+ G+SI +L
Sbjct: 204 DELLIMKRQAEVSSLKH---ALADFANRLDTPEVRQVASLLSRGDQLGSSISRNLLDQAD 260
Query: 278 ETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
R+ R A +A LT P++ F P ++++++ P+ + +
Sbjct: 261 HFRTARRQMATMQANRTPVFLTFPLMFCFAPAVLILLMSPSFMQL 305
>gi|261867450|ref|YP_003255372.1| TadC [Aggregatibacter actinomycetemcomitans D11S-1]
gi|261412782|gb|ACX82153.1| TadC [Aggregatibacter actinomycetemcomitans D11S-1]
Length = 288
Score = 62.8 bits (151), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 84/159 (52%), Gaps = 1/159 (0%)
Query: 164 PSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEML 223
P V I ++++ + I +DL+ + V++GISI+ AL++VA D + L+ ML
Sbjct: 126 PGVLIGSILKAKIKKIMNDLAGFIDLVAVNVQTGISIEAALKQVATDFKTLNPDLTYVML 185
Query: 224 LTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSER 283
I + S + A ++ +R + QS +G+SI L L ++ R +
Sbjct: 186 RIIRK-SEITGMSQALQDLSVSLPTTEIRMFCTVMQQSLNFGSSIYHQLIQLSTDIREIQ 244
Query: 284 LMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
L+ E+K +L K+++P+I+F + +I++I+ P ++ +
Sbjct: 245 LLAIEEKLGTLSAKMSIPLILFIMFPIIILILAPGVMRV 283
>gi|167570100|ref|ZP_02362974.1| hypothetical protein BoklC_09666 [Burkholderia oklahomensis C6786]
Length = 261
Score = 62.8 bits (151), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 80/166 (48%), Gaps = 4/166 (2%)
Query: 159 VGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPL 218
VGF P +++ R+ S+ P +D+L + G+S+DQ+++ V D G L
Sbjct: 89 VGFMLPKIYVRRRAAARRQSVVDEMPLLVDMLRLLQGVGLSLDQSIQVVTNDFKGMLPVL 148
Query: 219 SEEMLLTIAELSFLPNR--QVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLV 276
S E L IA+ F+ R + + + + +R + LIQ D++G ++ + L+
Sbjct: 149 SSE--LGIAQRQFVAGRTREQSLQRLATSFDNEDLRAIVRLLIQVDKHGGAVQEPLKQFG 206
Query: 277 SETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
R R ++ L K+T MI+ LP L +V GP +L++
Sbjct: 207 DRLREVRRAMLRERIGRLTVKMTGVMIVTLLPALFIVTAGPGMLAV 252
>gi|167561752|ref|ZP_02354668.1| hypothetical protein BoklE_04253 [Burkholderia oklahomensis EO147]
Length = 234
Score = 62.4 bits (150), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 80/166 (48%), Gaps = 4/166 (2%)
Query: 159 VGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPL 218
VGF P +++ R+ S+ P +D+L + G+S+DQ+++ V D G L
Sbjct: 62 VGFMLPKIYVRRRAAARRQSVVDEMPLLVDMLRLLQGVGLSLDQSIQVVTNDFKGMLPVL 121
Query: 219 SEEMLLTIAELSFLPNR--QVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLV 276
S E L IA+ F+ R + + + + +R + LIQ D++G ++ + L+
Sbjct: 122 SSE--LGIAQRQFVAGRTREQSLQRLATSFDNEDLRAIVRLLIQVDKHGGAVQEPLKQFG 179
Query: 277 SETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
R R ++ L K+T MI+ LP L +V GP +L++
Sbjct: 180 DRLREVRRAMLRERIGRLTVKMTGVMIVTLLPALFIVTAGPGMLAV 225
>gi|323525750|ref|YP_004227903.1| Type II secretion system F domain-containing protein [Burkholderia
sp. CCGE1001]
gi|323382752|gb|ADX54843.1| Type II secretion system F domain protein [Burkholderia sp.
CCGE1001]
Length = 367
Score = 62.4 bits (150), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 56/231 (24%), Positives = 107/231 (46%), Gaps = 15/231 (6%)
Query: 102 LRAAGFRSEYSLNILLVVR----LVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIG 157
L GF + + L+ R +V+P++ LG + G +L V+++
Sbjct: 143 LEQCGFVDARARGLFLIARVAGAIVLPLVAGALGHAHVEGPRYVL----------VVIVA 192
Query: 158 YV-GFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSV 216
+V G AP V + R+ ++ P +DLL + G+S+DQ+L+ + D G
Sbjct: 193 FVCGVMAPKVVLRRRAAARRGAVVDELPMLVDLLRLLQGVGLSLDQSLQVMVNDFRGVLP 252
Query: 217 PLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLV 276
LS E+ + + + R+ + + + + +R + LIQ DR+G ++ + L+
Sbjct: 253 VLSSELDIAQRQFAAGRTREQSLSRLASSFENEDLRAVVRLLIQVDRHGGAVQEPLKQFG 312
Query: 277 SETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
R R ++ + K+T MI+ LP L++V GP +LS+ ++K
Sbjct: 313 DRLRETRRAMLRERIGRMAVKMTGVMILTLLPALMIVTAGPGVLSVSHSLK 363
>gi|90412171|ref|ZP_01220177.1| hypothetical Flp pilus assembly protein TadC [Photobacterium
profundum 3TCK]
gi|90326895|gb|EAS43280.1| hypothetical Flp pilus assembly protein TadC [Photobacterium
profundum 3TCK]
Length = 283
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 77/142 (54%), Gaps = 1/142 (0%)
Query: 181 RAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFE 240
R P LD++ +CV++G++I+ AL ++ ++ L + T A+ + + + A
Sbjct: 137 RQLPYMLDMMSVCVQTGMTIEAALTYLSIELEAFDKDLCFHIKKT-ADGARVKGLEKALI 195
Query: 241 NFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV 300
R VR+ T LIQ+ +YGTSI + L L + R +++ E+K L K++V
Sbjct: 196 ELSERIPTPDVRSFTLTLIQNLQYGTSIANVLSALAEDMRKMQVLTMEEKIGKLAAKMSV 255
Query: 301 PMIIFFLPVLILVIIGPAILSI 322
P+I+ + ++++I+ P ++ +
Sbjct: 256 PLILLIMFPIVILILAPGMMQM 277
>gi|167399416|ref|ZP_02304940.1| type II secretion system protein [Yersinia pestis biovar Antiqua
str. UG05-0454]
gi|167051920|gb|EDR63328.1| type II secretion system protein [Yersinia pestis biovar Antiqua
str. UG05-0454]
Length = 205
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/210 (24%), Positives = 105/210 (50%), Gaps = 8/210 (3%)
Query: 121 LVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIK 180
++V I IL I+ IF + + L +G + +I + P + I N + KR +++
Sbjct: 1 MIVIFILSILTILAIFNVVNINQKTL-LTIGLLSIISTLYL--PRMIIKNALTKRTNNLL 57
Query: 181 RAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEM--LLTIAELSFLPNRQVA 238
++ P +D+ CV+SG++I+ +L + + L M + AE++ L N
Sbjct: 58 KSLPFFIDITAACVQSGMTIENSLNYTTQKFQTINTDLCLIMSKVTKRAEINGLENAIKE 117
Query: 239 FENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKL 298
+ + +M + Q S +G+++ + L L + R +L+ E+ + L KL
Sbjct: 118 LQYYSPAIEMKMFCSTLQY---SISFGSTVYEQLTHLSQDMREMQLLMTEESISKLSTKL 174
Query: 299 TVPMIIFFLPVLILVIIGPAILSIIDTMKD 328
T+P+ +F L +L++I P+IL +++ +K+
Sbjct: 175 TLPLFLFILIPFVLLVISPSILELLNYVKN 204
>gi|238563945|ref|ZP_00437984.2| type II secretion system protein [Burkholderia mallei GB8 horse 4]
gi|238519622|gb|EEP83092.1| type II secretion system protein [Burkholderia mallei GB8 horse 4]
Length = 268
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 58/240 (24%), Positives = 109/240 (45%), Gaps = 13/240 (5%)
Query: 90 KAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLR 149
K I+ DE+ + L G+ ++ I L R+ I + + + G + P +
Sbjct: 34 KQIVADEDRM-LLEQCGYVDAHTRGIFLSARIACAIA--LPAAVALVGGE-----PVRTH 85
Query: 150 VGAVILIGYV-GFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVA 208
+GA + + + GF P ++ R+ S+ P +D+L + G+S+DQ+++ V
Sbjct: 86 LGAWVALSVIAGFMLPKTYVRRRAAARRQSVVDEMPLLVDMLRLLQGVGLSLDQSIQVVT 145
Query: 209 EDIGGQSVPLSEEMLLTIAELSFLPNR--QVAFENFYNRTQMDCVRNATQALIQSDRYGT 266
D G LS E L IA+ F+ R + + + + +R + LIQ D++G
Sbjct: 146 NDFRGMLPVLSSE--LGIAQRQFVAGRTREQSLQRLATSFDNEDLRAIVRLLIQVDKHGG 203
Query: 267 SIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
++ + L+ R R ++ L K+T MI+ LP L +V GP +L++ +
Sbjct: 204 AVQEPLKQFGDRLREVRRAMLRERIGRLTVKMTGVMILTLLPALFIVTAGPGMLAVTHAL 263
>gi|167911130|ref|ZP_02498221.1| type II secretion system protein [Burkholderia pseudomallei 112]
Length = 267
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 58/240 (24%), Positives = 109/240 (45%), Gaps = 13/240 (5%)
Query: 90 KAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLR 149
K I+ DE+ + L G+ ++ I L R+ I + + + G + P +
Sbjct: 33 KQIVADEDRM-LLEQCGYVDAHTRGIFLSARIACAIA--LPAAVALVGGE-----PVRTH 84
Query: 150 VGAVILIGYV-GFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVA 208
+GA + + + GF P ++ R+ S+ P +D+L + G+S+DQ+++ V
Sbjct: 85 LGAWVALSVIAGFMLPKTYVRRRAAARRQSVVDEMPLLVDMLRLLQGVGLSLDQSIQVVT 144
Query: 209 EDIGGQSVPLSEEMLLTIAELSFLPNR--QVAFENFYNRTQMDCVRNATQALIQSDRYGT 266
D G LS E L IA+ F+ R + + + + +R + LIQ D++G
Sbjct: 145 NDFRGMLPVLSSE--LGIAQRQFVAGRTREQSLQRLATSFDNEDLRAIVRLLIQVDKHGG 202
Query: 267 SIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
++ + L+ R R ++ L K+T MI+ LP L +V GP +L++ +
Sbjct: 203 AVQEPLKQFGDRLREVRRAMLRERIGRLTVKMTGVMILTLLPALFIVTAGPGMLAVTHAL 262
>gi|91783015|ref|YP_558221.1| putative tight adherence TadC related transmembrane protein
[Burkholderia xenovorans LB400]
gi|91686969|gb|ABE30169.1| Putative tight adherence TadC related transmembrane protein
[Burkholderia xenovorans LB400]
Length = 337
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 65/238 (27%), Positives = 105/238 (44%), Gaps = 13/238 (5%)
Query: 93 LVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGA 152
+V E L GF + + LV RL ++ +L + G + Y V
Sbjct: 104 IVAEEDRRLLEQCGFVDTRTRGLFLVARLAGAMVLPVLAGMLTRGQFEGSRY-----VAL 158
Query: 153 VILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIG 212
VI+ GF P + KR++ + P +DLL + G+S+DQ+L+ V D
Sbjct: 159 VIIAAMAGFMLPKFVLRRRAGKRRNGVVDELPLLVDLLRLLQGVGLSLDQSLQVVVNDFR 218
Query: 213 GQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR--TQMDC--VRNATQALIQSDRYGTSI 268
G L+ E L IA+ F R E NR T D +R + L+Q DR+G ++
Sbjct: 219 GMLPVLAGE--LEIAQRQFTAGR--TREQSLNRLATSYDNEDLRAVMRLLVQVDRHGGAV 274
Query: 269 GDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
+ L+ R R ++ L K+T MI+ LP L++V GP +L++ ++
Sbjct: 275 QEPLKQFGDRLRETRRAMLRERIGRLAVKMTGVMIVTLLPALMIVTAGPGVLAVQHSL 332
>gi|153833197|ref|ZP_01985864.1| bipartite nuclear localization signal containing protein [Vibrio
harveyi HY01]
gi|156977404|ref|YP_001448310.1| hypothetical protein VIBHAR_06191 [Vibrio harveyi ATCC BAA-1116]
gi|148870468|gb|EDL69383.1| bipartite nuclear localization signal containing protein [Vibrio
harveyi HY01]
gi|156528998|gb|ABU74083.1| hypothetical protein VIBHAR_06191 [Vibrio harveyi ATCC BAA-1116]
Length = 280
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 85/157 (54%), Gaps = 5/157 (3%)
Query: 170 NLVQKRQSSIKRA----WPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLT 225
+L+Q R+ + R P LD++ +CV++G++I+ AL + +++ L ++ T
Sbjct: 121 SLLQMRRKILIRKTSAQLPYLLDMMSVCVQTGMTIEAALVYLGKELAEFDSDLCYQIKRT 180
Query: 226 IAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLM 285
++ + + + A + R +R+ +IQ+ +YGTS+ L L + R +++
Sbjct: 181 -SDSAKIHGLEKALNDLSERIPTPPIRSFVLTIIQNLQYGTSVAQVLSDLAEDMRKVQIL 239
Query: 286 EAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
E+K L K++VP+I+F + ++++I+ P I+ +
Sbjct: 240 TVEEKVGKLSAKMSVPLILFIMFPIVILILAPGIMQM 276
>gi|167845911|ref|ZP_02471419.1| type II secretion system protein [Burkholderia pseudomallei B7210]
Length = 270
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 58/240 (24%), Positives = 109/240 (45%), Gaps = 13/240 (5%)
Query: 90 KAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLR 149
K I+ DE+ + L G+ ++ I L R+ I + + + G + P +
Sbjct: 36 KQIVADEDRM-LLEQCGYVDAHTRGIFLSARIACAIA--LPAAVALVGGE-----PVRTH 87
Query: 150 VGAVILIGYV-GFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVA 208
+GA + + + GF P ++ R+ S+ P +D+L + G+S+DQ+++ V
Sbjct: 88 LGAWVALSVIAGFMLPKTYVRRRAAARRQSVVDEMPLLVDMLRLLQGVGLSLDQSIQVVT 147
Query: 209 EDIGGQSVPLSEEMLLTIAELSFLPNR--QVAFENFYNRTQMDCVRNATQALIQSDRYGT 266
D G LS E L IA+ F+ R + + + + +R + LIQ D++G
Sbjct: 148 NDFRGMLPVLSSE--LGIAQRQFVAGRTREQSLQRLATSFDNEDLRAIVRLLIQVDKHGG 205
Query: 267 SIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
++ + L+ R R ++ L K+T MI+ LP L +V GP +L++ +
Sbjct: 206 AVQEPLKQFGDRLREVRRAMLRERIGRLTVKMTGVMILTLLPALFIVTAGPGMLAVTHAL 265
>gi|171921006|gb|ACB59189.1| TadC [Actinobacillus suis ATCC 33415]
Length = 281
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 86/160 (53%), Gaps = 1/160 (0%)
Query: 164 PSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEML 223
PS+ I +++ + I P +DL+ + V++GISI+ A ++VA D + L+ ++
Sbjct: 119 PSITIGIILKSKIKRIMNDIPGFIDLVAVNVQTGISIEAAFKQVAIDFEHLNADLTY-VI 177
Query: 224 LTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSER 283
L I + L + A ++ +R + QS +G+S+ + L L ++ R +
Sbjct: 178 LRIMRKAELTSLSAALQDMAISLPTKEIRMFCTVMQQSLNFGSSLYEHLTQLSADIREMQ 237
Query: 284 LMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSII 323
L+ E+K +L K+++P+I+F + +I++I+ P + ++
Sbjct: 238 LLVMEEKLGTLSAKMSIPLILFIMFPIIILIVAPGAMRVL 277
>gi|5670332|gb|AAD38174.2|AF152598_3 TadC [Aggregatibacter actinomycetemcomitans]
gi|26000717|gb|AAN75213.1| TadC [Aggregatibacter actinomycetemcomitans]
Length = 288
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 60/273 (21%), Positives = 132/273 (48%), Gaps = 28/273 (10%)
Query: 56 RKQQITSLQ-KDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLN 114
RK+ IT + KD S + SK +++ L+ +L++ N + L+ G +
Sbjct: 33 RKEVITGERPKDQDSDEVAKNKSK------QQIELELLLINNNPI--LKVLGIIDKN--- 81
Query: 115 ILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCA-----PSVWIS 169
+++ + I+ L+ G+ +++ + + + +L+G++ P V I
Sbjct: 82 ----IKVKLLIMLLLFGVYYLYSFTD------ETTDSSSLLLGFLTILIITIVIPGVLIG 131
Query: 170 NLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAEL 229
++++ + I +DL+ + V++GISI+ AL++VA D + L+ ML I +
Sbjct: 132 SILKAKIKKIMNDLAGFIDLVAVNVQTGISIEAALKQVATDFKTLNPDLTYVMLRIIRK- 190
Query: 230 SFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEK 289
S + A ++ +R + QS +G+SI L L ++ R +L+ E+
Sbjct: 191 SEITGMSQALQDLSVSLPTTEIRMFCTVMQQSLNFGSSIYHQLIQLSTDIREIQLLAIEE 250
Query: 290 KAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
K +L K+++P+I+F + +I++ + P ++ +
Sbjct: 251 KLGTLSAKMSIPLILFIMFPIIILTLAPGVMKV 283
>gi|167738780|ref|ZP_02411554.1| type II secretion system protein [Burkholderia pseudomallei 14]
Length = 271
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 58/240 (24%), Positives = 109/240 (45%), Gaps = 13/240 (5%)
Query: 90 KAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLR 149
K I+ DE+ + L G+ ++ I L R+ I + + + G + P +
Sbjct: 37 KQIVADEDRM-LLEQCGYVDAHTRGIFLSARIACAIA--LPAAVALVGGE-----PVRTH 88
Query: 150 VGAVILIGYV-GFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVA 208
+GA + + + GF P ++ R+ S+ P +D+L + G+S+DQ+++ V
Sbjct: 89 LGAWVALSVIAGFMLPKTYVRRRAAARRQSVVDEMPLLVDMLRLLQGVGLSLDQSIQVVT 148
Query: 209 EDIGGQSVPLSEEMLLTIAELSFLPNR--QVAFENFYNRTQMDCVRNATQALIQSDRYGT 266
D G LS E L IA+ F+ R + + + + +R + LIQ D++G
Sbjct: 149 NDFRGMLPVLSSE--LGIAQRQFVAGRTREQSLQRLATSFDNEDLRAIVRLLIQVDKHGG 206
Query: 267 SIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
++ + L+ R R ++ L K+T MI+ LP L +V GP +L++ +
Sbjct: 207 AVQEPLKQFGDRLREVRRAMLRERIGRLTVKMTGVMILTLLPALFIVTAGPGMLAVTHAL 266
>gi|296130402|ref|YP_003637652.1| Type II secretion system F domain protein [Cellulomonas flavigena
DSM 20109]
gi|296022217|gb|ADG75453.1| Type II secretion system F domain protein [Cellulomonas flavigena
DSM 20109]
Length = 299
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 71/134 (52%), Gaps = 4/134 (2%)
Query: 184 PDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFY 243
PD LD+L + V +G++ AL RV++ G PLSEE+ LT+ +++ + + AF++
Sbjct: 153 PDFLDVLAVTVMAGVNFRAALARVSQHFEG---PLSEEIDLTLHQIANGASVRQAFQDLR 209
Query: 244 NRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMI 303
R+ + V AL+QS G + +SL+ + + R + AA P++T+
Sbjct: 210 RRSASESVGQFVSALLQSQELGAPLAESLQRIAEDMRKASGQRQRQAAAKASPRVTLVTS 269
Query: 304 IFFLP-VLILVIIG 316
+ +P L+ + +G
Sbjct: 270 MVLVPGALVFIFVG 283
>gi|53723518|ref|YP_102952.1| hypothetical protein BMA1286 [Burkholderia mallei ATCC 23344]
gi|76808991|ref|YP_333345.1| hypothetical protein BURPS1710b_1946 [Burkholderia pseudomallei
1710b]
gi|121599511|ref|YP_993094.1| type II secretion system protein [Burkholderia mallei SAVP1]
gi|124383879|ref|YP_001026129.1| hypothetical protein BMA10229_A0121 [Burkholderia mallei NCTC
10229]
gi|126450979|ref|YP_001080599.1| type II secretion system protein [Burkholderia mallei NCTC 10247]
gi|126452133|ref|YP_001066062.1| type II secretion system protein [Burkholderia pseudomallei 1106a]
gi|242317541|ref|ZP_04816557.1| type II secretion system protein [Burkholderia pseudomallei 1106b]
gi|254178228|ref|ZP_04884883.1| type II secretion system protein [Burkholderia mallei ATCC 10399]
gi|254206225|ref|ZP_04912577.1| type II secretion system protein [Burkholderia mallei JHU]
gi|254261112|ref|ZP_04952166.1| type II secretion system protein [Burkholderia pseudomallei 1710a]
gi|254297789|ref|ZP_04965242.1| type II secretion system protein [Burkholderia pseudomallei 406e]
gi|52426941|gb|AAU47534.1| membrane protein, putative [Burkholderia mallei ATCC 23344]
gi|76578444|gb|ABA47919.1| membrane protein, putative [Burkholderia pseudomallei 1710b]
gi|121228321|gb|ABM50839.1| type II secretion system protein [Burkholderia mallei SAVP1]
gi|124291899|gb|ABN01168.1| putative membrane protein [Burkholderia mallei NCTC 10229]
gi|126225775|gb|ABN89315.1| type II secretion system protein [Burkholderia pseudomallei 1106a]
gi|126243849|gb|ABO06942.1| type II secretion system protein [Burkholderia mallei NCTC 10247]
gi|147753668|gb|EDK60733.1| type II secretion system protein [Burkholderia mallei JHU]
gi|157807302|gb|EDO84472.1| type II secretion system protein [Burkholderia pseudomallei 406e]
gi|160699267|gb|EDP89237.1| type II secretion system protein [Burkholderia mallei ATCC 10399]
gi|242140780|gb|EES27182.1| type II secretion system protein [Burkholderia pseudomallei 1106b]
gi|254219801|gb|EET09185.1| type II secretion system protein [Burkholderia pseudomallei 1710a]
Length = 336
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 58/240 (24%), Positives = 109/240 (45%), Gaps = 13/240 (5%)
Query: 90 KAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLR 149
K I+ DE+ + L G+ ++ I L R+ I + + + G + P +
Sbjct: 102 KQIVADEDRM-LLEQCGYVDAHTRGIFLSARIACAIA--LPAAVALVGGE-----PVRTH 153
Query: 150 VGAVILIGYV-GFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVA 208
+GA + + + GF P ++ R+ S+ P +D+L + G+S+DQ+++ V
Sbjct: 154 LGAWVALSVIAGFMLPKTYVRRRAAARRQSVVDEMPLLVDMLRLLQGVGLSLDQSIQVVT 213
Query: 209 EDIGGQSVPLSEEMLLTIAELSFLPNR--QVAFENFYNRTQMDCVRNATQALIQSDRYGT 266
D G LS E L IA+ F+ R + + + + +R + LIQ D++G
Sbjct: 214 NDFRGMLPVLSSE--LGIAQRQFVAGRTREQSLQRLATSFDNEDLRAIVRLLIQVDKHGG 271
Query: 267 SIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
++ + L+ R R ++ L K+T MI+ LP L +V GP +L++ +
Sbjct: 272 AVQEPLKQFGDRLREVRRAMLRERIGRLTVKMTGVMILTLLPALFIVTAGPGMLAVTHAL 331
>gi|161524901|ref|YP_001579913.1| type II secretion system protein [Burkholderia multivorans ATCC
17616]
gi|189350349|ref|YP_001945977.1| pilus assembly protein [Burkholderia multivorans ATCC 17616]
gi|160342330|gb|ABX15416.1| type II secretion system protein [Burkholderia multivorans ATCC
17616]
gi|189334371|dbj|BAG43441.1| pilus assembly protein [Burkholderia multivorans ATCC 17616]
Length = 330
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 54/244 (22%), Positives = 105/244 (43%), Gaps = 20/244 (8%)
Query: 90 KAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLR 149
K I+ DE+ L G+ S + L R+ I+ L ++ G K
Sbjct: 96 KHIVADED-RRLLEQCGYVDARSRGLFLSARMACGIVLPFLFAVFASGRMK--------- 145
Query: 150 VGAVILIGY-----VGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQAL 204
G +IG +G P +++ R+ + P +D+L + G+S+DQ+L
Sbjct: 146 -GGYWVIGMCVAFALGLMLPKLYVQRRAAARRQCVDDELPLFVDMLRLLQGVGLSLDQSL 204
Query: 205 RRVAEDIGGQSVPLSEEMLLTIAELSFLPNR--QVAFENFYNRTQMDCVRNATQALIQSD 262
+ V D G LS E + +A+ F+ R + + + + +R + ++Q D
Sbjct: 205 QVVTNDFRGMMPVLSSE--VGVAQRQFVAGRTREQSMQRLSGGFDNEDLRAIVRLMVQVD 262
Query: 263 RYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
++G ++ + L+ R R ++ L K+T M++ LP L++V GP L++
Sbjct: 263 KHGGAVQEPLKQFGDRLRETRRAMLRERIGRLTVKMTGVMVLTLLPALLIVTAGPGFLAV 322
Query: 323 IDTM 326
+ +
Sbjct: 323 MHAL 326
>gi|307730002|ref|YP_003907226.1| type II secretion system F domain-containing protein [Burkholderia
sp. CCGE1003]
gi|307584537|gb|ADN57935.1| Type II secretion system F domain protein [Burkholderia sp.
CCGE1003]
Length = 353
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 85/176 (48%)
Query: 152 AVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDI 211
AVI+ G AP V + R++++ P +DLL + G+S+DQ+L+ + D
Sbjct: 174 AVIVAFVCGVMAPKVVLRRRAAARRAAVVDELPMLVDLLRLLQGVGLSLDQSLQVMVNDF 233
Query: 212 GGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDS 271
G LS E+ + + + R+ + + + +R + LIQ DR+G ++ +
Sbjct: 234 RGVLPVLSGELEIAQRQFAAGRTREQSLARLASSFDNEDLRAVVRLLIQVDRHGGAVQEP 293
Query: 272 LRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
L+ R R ++ + K+T MI+ LP L++V GP +LS+ ++K
Sbjct: 294 LKQFGDRLRETRRAMLRERIGRMAVKMTGVMILTLLPALMIVTAGPGVLSVSHSLK 349
>gi|262360786|gb|ACY57507.1| hypothetical protein YPD4_0598 [Yersinia pestis D106004]
Length = 193
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 89/169 (52%), Gaps = 9/169 (5%)
Query: 164 PSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEM- 222
P + I N + KR +++ ++ P +D+ CV+SG++I+ +L + + L M
Sbjct: 29 PRMIIKNALTKRTNNLLKSLPFFIDITAACVQSGMTIENSLNYTTQKFQTINTDLCLIMS 88
Query: 223 -LLTIAELSFLPN--RQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSET 279
+ AE++ L N +++ + + +M C L S +G+++ + L L +
Sbjct: 89 KVTKRAEINGLENAIKELQYYSPAIEMKMFC-----STLQYSISFGSTVYEQLTHLSQDM 143
Query: 280 RSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMKD 328
R +L+ E+ + L KLT+P+ +F L +L++I P+IL +++ +K+
Sbjct: 144 REMQLLMTEESISKLSTKLTLPLFLFILIPFVLLVISPSILELLNYVKN 192
>gi|251767749|ref|ZP_02268267.2| type II secretion system protein [Burkholderia mallei PRL-20]
gi|254188637|ref|ZP_04895148.1| type II secretion system protein [Burkholderia pseudomallei Pasteur
52237]
gi|157936316|gb|EDO91986.1| type II secretion system protein [Burkholderia pseudomallei Pasteur
52237]
gi|243061818|gb|EES44004.1| type II secretion system protein [Burkholderia mallei PRL-20]
Length = 339
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 58/240 (24%), Positives = 109/240 (45%), Gaps = 13/240 (5%)
Query: 90 KAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLR 149
K I+ DE+ + L G+ ++ I L R+ I + + + G + P +
Sbjct: 105 KQIVADEDRM-LLEQCGYVDAHTRGIFLSARIACAIA--LPAAVALVGGE-----PVRTH 156
Query: 150 VGAVILIGYV-GFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVA 208
+GA + + + GF P ++ R+ S+ P +D+L + G+S+DQ+++ V
Sbjct: 157 LGAWVALSVIAGFMLPKTYVRRRAAARRQSVVDEMPLLVDMLRLLQGVGLSLDQSIQVVT 216
Query: 209 EDIGGQSVPLSEEMLLTIAELSFLPNR--QVAFENFYNRTQMDCVRNATQALIQSDRYGT 266
D G LS E L IA+ F+ R + + + + +R + LIQ D++G
Sbjct: 217 NDFRGMLPVLSSE--LGIAQRQFVAGRTREQSLQRLATSFDNEDLRAIVRLLIQVDKHGG 274
Query: 267 SIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
++ + L+ R R ++ L K+T MI+ LP L +V GP +L++ +
Sbjct: 275 AVQEPLKQFGDRLREVRRAMLRERIGRLTVKMTGVMILTLLPALFIVTAGPGMLAVTHAL 334
>gi|125973852|ref|YP_001037762.1| type II secretion system protein [Clostridium thermocellum ATCC
27405]
gi|125714077|gb|ABN52569.1| type II secretion system protein [Clostridium thermocellum ATCC
27405]
Length = 289
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 86/160 (53%), Gaps = 3/160 (1%)
Query: 168 ISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIA 227
+S V +R+ SI+ +PD L+ +++ V +G+++ +A + D +V L +E+ +A
Sbjct: 132 LSGKVNRRRLSIQLDFPDFLNKVILLVNAGMTVSRAWEKSVTDSEKDTV-LYQELRTVLA 190
Query: 228 ELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTS-IGDSLRVLVSETRSERLME 286
++ + AFE+F NR ++ + AL+Q+ G + + LR+ +E R
Sbjct: 191 DIRGGKSETSAFEDFANRCRIPEITKFVSALLQNLNKGNAEMVSILRLQAAECWEMRKHA 250
Query: 287 AEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
A++ K+ PM++ F+ V IL++ PA+L++ +M
Sbjct: 251 AKRLGEEASTKMLFPMMLMFIAV-ILIVATPAVLTLTGSM 289
>gi|256004306|ref|ZP_05429288.1| type II secretion system protein [Clostridium thermocellum DSM
2360]
gi|281418014|ref|ZP_06249034.1| Type II secretion system F domain protein [Clostridium thermocellum
JW20]
gi|255991740|gb|EEU01840.1| type II secretion system protein [Clostridium thermocellum DSM
2360]
gi|281409416|gb|EFB39674.1| Type II secretion system F domain protein [Clostridium thermocellum
JW20]
gi|316939950|gb|ADU73984.1| Type II secretion system F domain [Clostridium thermocellum DSM
1313]
Length = 289
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 86/160 (53%), Gaps = 3/160 (1%)
Query: 168 ISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIA 227
+S V +R+ SI+ +PD L+ +++ V +G+++ +A + D +V L +E+ +A
Sbjct: 132 LSGKVNRRRLSIQLDFPDFLNKVILLVNAGMTVSRAWEKSVTDSEKDTV-LYQELRTVLA 190
Query: 228 ELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTS-IGDSLRVLVSETRSERLME 286
++ + AFE+F NR ++ + AL+Q+ G + + LR+ +E R
Sbjct: 191 DIRGGKSETSAFEDFANRCRIPEITKFVSALLQNLNKGNAEMVSILRLQAAECWEMRKHA 250
Query: 287 AEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
A++ K+ PM++ F+ V IL++ PA+L++ +M
Sbjct: 251 AKRLGEEASTKMLFPMMLMFIAV-ILIVATPAVLTLTGSM 289
>gi|78066135|ref|YP_368904.1| Flp pilus assembly protein TadC [Burkholderia sp. 383]
gi|77966880|gb|ABB08260.1| Flp pilus assembly protein TadC [Burkholderia sp. 383]
Length = 332
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/169 (23%), Positives = 81/169 (47%)
Query: 160 GFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLS 219
G+ P +++ R+ SI P +D+L + G+S+DQ+++ V D LS
Sbjct: 161 GYMLPKIYVRRRATARRRSISAELPLLVDMLRLLQGVGLSLDQSIQVVVHDFQTMLPVLS 220
Query: 220 EEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSET 279
E+ + + + R+ + + N + +R + LIQ D++G ++ + L+
Sbjct: 221 WELAVAQRQFAAGRTREQSLQRLTNSFDNEDLRAIVRLLIQVDKHGGAVQEPLKQFGDRL 280
Query: 280 RSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMKD 328
R R ++ L K+T MI+ LP L++V GP +++++ + +
Sbjct: 281 REGRRATLREQIGRLTVKMTGVMIVTLLPALLIVTAGPGVMTVLAALAE 329
>gi|251791986|ref|YP_003006706.1| TadC [Aggregatibacter aphrophilus NJ8700]
gi|247533373|gb|ACS96619.1| TadC [Aggregatibacter aphrophilus NJ8700]
Length = 288
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 84/159 (52%), Gaps = 1/159 (0%)
Query: 164 PSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEML 223
P ++++++ + I +DL+ + V++G+SI+ AL++VA D + L+ ML
Sbjct: 126 PGFLVNSILKSKIKKIMNDLAGFIDLVAVNVQTGVSIEAALKQVATDFKTLNPDLTYVML 185
Query: 224 LTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSER 283
I + S + A ++ +R + QS +G+SI L L S+ R +
Sbjct: 186 RIIRK-SEITGMSQALQDLSISLPTTEIRMFCTVMQQSLNFGSSIYHQLIQLSSDIRELQ 244
Query: 284 LMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
L+ E+K +L K+++P+I+F + +I++I+ P ++ +
Sbjct: 245 LLTIEEKLGTLAAKMSIPLILFIMFPIIILILAPGVMRV 283
>gi|257139285|ref|ZP_05587547.1| hypothetical protein BthaA_08776 [Burkholderia thailandensis E264]
Length = 253
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 80/169 (47%), Gaps = 4/169 (2%)
Query: 160 GFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLS 219
GF P +++ R+ S+ P +D+L + G+S+DQ+++ V D G LS
Sbjct: 82 GFMLPKIYVRRRAAARRQSVVDEMPLLVDMLRLLQGVGLSLDQSIQVVTNDFKGMLPVLS 141
Query: 220 EEMLLTIAELSFLPNR--QVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVS 277
E L IA+ F+ R + + + + +R + LIQ D++G ++ + L+
Sbjct: 142 SE--LGIAQRQFVAGRTREQSLQRLATSFDNEDLRAIVRLLIQVDKHGGAVQEPLKQFGD 199
Query: 278 ETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
R R ++ L K+T MI+ LP L +V GP +L++ +
Sbjct: 200 RLREVRRAMLRERIGRLTVKMTGVMILTLLPALFIVTAGPGMLAVTHAL 248
>gi|167582055|ref|ZP_02374929.1| hypothetical protein BthaT_28187 [Burkholderia thailandensis TXDOH]
Length = 278
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 80/169 (47%), Gaps = 4/169 (2%)
Query: 160 GFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLS 219
GF P +++ R+ S+ P +D+L + G+S+DQ+++ V D G LS
Sbjct: 107 GFMLPKIYVRRRAAARRQSVVDEMPLLVDMLRLLQGVGLSLDQSIQVVTNDFKGMLPVLS 166
Query: 220 EEMLLTIAELSFLPNR--QVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVS 277
E L IA+ F+ R + + + + +R + LIQ D++G ++ + L+
Sbjct: 167 SE--LGIAQRQFVAGRTREQSLQRLATSFDNEDLRAIVRLLIQVDKHGGAVQEPLKQFGD 224
Query: 278 ETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
R R ++ L K+T MI+ LP L +V GP +L++ +
Sbjct: 225 RLREVRRAMLRERIGRLTVKMTGVMILTLLPALFIVTAGPGMLAVTHAL 273
>gi|317133736|ref|YP_004089647.1| Type II secretion system F domain [Ruminococcus albus 7]
gi|315450198|gb|ADU23761.1| Type II secretion system F domain [Ruminococcus albus 7]
Length = 286
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/221 (24%), Positives = 114/221 (51%), Gaps = 13/221 (5%)
Query: 110 EYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPF-QLRVG-AVILIGYVGFCAPSVW 167
E +L+ L++ R ++ + +LGI+ F L+ P L +G A +I + F +P+
Sbjct: 75 EPNLDKLIITR-ILAVTIAVLGILIAF----LINTPLISLLIGLATAVITILVFISPTAT 129
Query: 168 ISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEML--LT 225
I++ QK+++ + P LDL ++ + + A++ AE I G LSEE+L L
Sbjct: 130 INDRAQKKKAQFESEIPRFLDLFQTAIKINLPVATAIKITAESIDG---ILSEELLRALV 186
Query: 226 IAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLM 285
+ EL N Q + + + ++D + ++ + + G+ I +S+ +S L+
Sbjct: 187 VTELG-TSNWQDSLYDIAQKYEVDSFSDFVLDIVTAFQKGSDITESVERQSRSIKSSTLL 245
Query: 286 EAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
A+++AA + +P+++F + L++++ P I+ I++ M
Sbjct: 246 SAKEQAAKTTSLILIPVVVFKMIPLMIILFLPVIMQILNGM 286
>gi|149909542|ref|ZP_01898196.1| bipartite nuclear localization signal containing protein, similarto
TadC [Moritella sp. PE36]
gi|149807447|gb|EDM67398.1| bipartite nuclear localization signal containing protein, similarto
TadC [Moritella sp. PE36]
Length = 296
Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/145 (23%), Positives = 80/145 (55%), Gaps = 1/145 (0%)
Query: 179 IKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVA 238
I P LDL+ +CV++G++++ A+ +++++ L+ +L+ + + + +A
Sbjct: 150 ISNKLPYLLDLMAVCVQTGMTLESAISYLSKEMTEFDKDLTN-VLVKTNDRARIVGLAMA 208
Query: 239 FENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKL 298
+ Y R + +R+ L QS ++G+SI L L + R +++ E+K L K+
Sbjct: 209 LDELYLRVPSNEMRSFVMTLKQSLQFGSSISQVLTTLSGDIRQVQILGLEEKIGKLAAKM 268
Query: 299 TVPMIIFFLPVLILVIIGPAILSII 323
++P+I+F + ++++I P I+ ++
Sbjct: 269 SIPLIVFIMVPVVILIAAPGIMRMM 293
>gi|294146460|ref|YP_003559126.1| Flp pilus assembly protein TadC [Sphingobium japonicum UT26S]
gi|292676877|dbj|BAI98394.1| Flp pilus assembly protein TadC [Sphingobium japonicum UT26S]
Length = 287
Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 63/235 (26%), Positives = 112/235 (47%), Gaps = 12/235 (5%)
Query: 97 NIVNKLRAAGFRSEYSLNILLVVRLVVPI-IFLILGIIWIFGYDKLLEYPFQLRVGAVIL 155
I +KL AGF+ + + + R+ + L ++ G+ L P + VI+
Sbjct: 57 EIADKLMLAGFQDARAADRFVWARMAATVGAGLAAMLVSRIGWGGFLAQPLLV----VIV 112
Query: 156 IG--YVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGG 213
G YVG I L +R +I +P LDL+L+ +ESGIS+DQ R +A D
Sbjct: 113 TGLTYVG---AKQAIHLLAARRARAIMAEFPFLLDLMLMMLESGISLDQCFRSIARD-EA 168
Query: 214 QSVPLSEEML-LTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSL 272
+VP ++ + +A+L + A + + R ++ + Q+ G + +L
Sbjct: 169 IAVPHHARLIAMLVADLDRGMRYEQALDRWAARVAVNGAKELAALFRQALFQGVELAPAL 228
Query: 273 RVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
R V E R+ A + + ++ V MI+FF+P L +V+ GP +++I DT++
Sbjct: 229 REFVREFTQRRVANAREAMGGITVRMVVLMILFFMPALFVVLGGPPVVAIFDTLR 283
>gi|160897511|ref|YP_001563093.1| type II secretion system protein [Delftia acidovorans SPH-1]
gi|160363095|gb|ABX34708.1| type II secretion system protein [Delftia acidovorans SPH-1]
Length = 334
Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 58/239 (24%), Positives = 111/239 (46%), Gaps = 12/239 (5%)
Query: 90 KAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIF--LILGIIWIFGYDKLLEYPFQ 147
KA+L DE+ L AG + + R+V+ ++ L LG++ G + L Y F
Sbjct: 100 KALLADED-RKLLDQAGVGTRNGSMAYVASRMVLCVVLPLLALGVL-RPGENAALMYGF- 156
Query: 148 LRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRV 207
L +G P ++ + + R+ + P +DLL + G+S+DQ+L+ +
Sbjct: 157 -------LGVSLGLMLPKWFLRSRAKGRREQVVEELPLFVDLLRLLQGVGLSVDQSLQIL 209
Query: 208 AEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTS 267
A + +S E+ L + R+ +F+ N + D + L+Q D++G +
Sbjct: 210 ASEFKSVLRVISGELALANQLYNTGRTREQSFQRMVNMSADDDMSAIVNLLVQVDKHGGA 269
Query: 268 IGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
+ + LR R +R ++K S+ K+T M++ LP L+++ GP L++I +
Sbjct: 270 VQEPLREFSIRLREKRQASFKEKIGSITVKMTGVMVLTLLPALLVITAGPGFLAVIRAL 328
>gi|167894486|ref|ZP_02481888.1| type II secretion system protein [Burkholderia pseudomallei 7894]
Length = 269
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 57/240 (23%), Positives = 110/240 (45%), Gaps = 13/240 (5%)
Query: 90 KAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLR 149
K I+ DE+ + L G+ ++ I L R+ I + + + G + + +
Sbjct: 35 KQIVADEDRM-LLEQCGYVDAHTRGIFLSARIACAIA--LPAAVALVGGETVRTH----- 86
Query: 150 VGAVILIGYV-GFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVA 208
+GA + + + GF P +++ R+ S+ P +D+L + G+S+DQ+++ V
Sbjct: 87 LGAWVALSVIAGFMLPKIYVRRRAAARRQSVVDEMPLLVDMLRLLQGVGLSLDQSIQVVT 146
Query: 209 EDIGGQSVPLSEEMLLTIAELSFLPNR--QVAFENFYNRTQMDCVRNATQALIQSDRYGT 266
D G LS E L IA+ F+ R + + + + +R + LIQ D++G
Sbjct: 147 NDFRGMLPVLSSE--LGIAQRQFVAGRTREQSLQRLATSFDNEDLRAIVRLLIQVDKHGG 204
Query: 267 SIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
++ + L+ R R ++ L K+T MI+ LP L +V GP +L++ +
Sbjct: 205 AVQEPLKQFGDRLREVRRAMLRERIGRLTVKMTGVMILTLLPALFIVTAGPGMLAVTHAL 264
>gi|167620218|ref|ZP_02388849.1| hypothetical protein BthaB_28185 [Burkholderia thailandensis Bt4]
Length = 268
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 80/169 (47%), Gaps = 4/169 (2%)
Query: 160 GFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLS 219
GF P +++ R+ S+ P +D+L + G+S+DQ+++ V D G LS
Sbjct: 97 GFMLPKIYVRRRAAARRQSVVDEMPLLVDMLRLLQGVGLSLDQSIQVVTNDFKGMLPVLS 156
Query: 220 EEMLLTIAELSFLPNR--QVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVS 277
E L IA+ F+ R + + + + +R + LIQ D++G ++ + L+
Sbjct: 157 SE--LGIAQRQFVAGRTREQSLQRLATSFDNEDLRAIVRLLIQVDKHGGAVQEPLKQFGD 214
Query: 278 ETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
R R ++ L K+T MI+ LP L +V GP +L++ +
Sbjct: 215 RLREVRRAMLRERIGRLTVKMTGVMILTLLPALFIVTAGPGMLAVTHAL 263
>gi|167919153|ref|ZP_02506244.1| type II secretion system protein [Burkholderia pseudomallei BCC215]
Length = 274
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 57/240 (23%), Positives = 110/240 (45%), Gaps = 13/240 (5%)
Query: 90 KAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLR 149
K I+ DE+ + L G+ ++ I L R+ I + + + G + + +
Sbjct: 40 KQIVADEDRM-LLEQCGYVDAHTRGIFLSARIACAIA--LPAAVALVGGETVRTH----- 91
Query: 150 VGAVILIGYV-GFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVA 208
+GA + + + GF P +++ R+ S+ P +D+L + G+S+DQ+++ V
Sbjct: 92 LGAWVALSVIAGFMLPKIYVRRRAAARRQSVVDEMPLLVDMLRLLQGVGLSLDQSIQVVT 151
Query: 209 EDIGGQSVPLSEEMLLTIAELSFLPNR--QVAFENFYNRTQMDCVRNATQALIQSDRYGT 266
D G LS E L IA+ F+ R + + + + +R + LIQ D++G
Sbjct: 152 NDFRGMLPVLSSE--LGIAQRQFVAGRTREQSLQRLATSFDNEDLRAIVRLLIQVDKHGG 209
Query: 267 SIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
++ + L+ R R ++ L K+T MI+ LP L +V GP +L++ +
Sbjct: 210 AVQEPLKQFGDRLREVRRAMLRERIGRLTVKMTGVMILTLLPALFIVTAGPGMLAVTHAL 269
>gi|327538076|gb|EGF24766.1| type II secretion system protein [Rhodopirellula baltica WH47]
Length = 306
Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 75/156 (48%), Gaps = 14/156 (8%)
Query: 179 IKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIA-----ELSFLP 233
+ R P A+DL E G+ D AL R Q + +L + +L
Sbjct: 152 VSRDLPLAMDLWATLSEGGLGFDAALDRW------QRTQRPDRVLASACRGFQRDLLGGM 205
Query: 234 NRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAAS 293
R VAF R + + T A+IQS++ G S+ ++LR+ + R+ER ++ A S
Sbjct: 206 RRSVAFRRLAGRLDVPPLTRFTAAMIQSEQMGASVSETLRLQAEDVRAERREKSMAFAQS 265
Query: 294 LGPKLTVPMIIFFLPVLILVIIGP---AILSIIDTM 326
L K +P+++ FLP L + +GP +L I+D++
Sbjct: 266 LATKRVIPLVVCFLPGLFVWPLGPFFTQLLRIVDSL 301
>gi|32477853|ref|NP_870847.1| integral membrane protein [Rhodopirellula baltica SH 1]
gi|32448410|emb|CAD77925.1| probable integral membrane protein [Rhodopirellula baltica SH 1]
Length = 306
Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 75/156 (48%), Gaps = 14/156 (8%)
Query: 179 IKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIA-----ELSFLP 233
+ R P A+DL E G+ D AL R Q + +L + +L
Sbjct: 152 VSRDLPLAMDLWATLSEGGLGFDAALDRW------QRTQRPDRVLASACRGFQRDLLGGM 205
Query: 234 NRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAAS 293
R VAF R + + T A+IQS++ G S+ ++LR+ + R+ER ++ A S
Sbjct: 206 RRSVAFRRLAGRLDVPPLTRFTAAMIQSEQMGASVSETLRLQAEDVRAERREKSMAFAQS 265
Query: 294 LGPKLTVPMIIFFLPVLILVIIGP---AILSIIDTM 326
L K +P+++ FLP L + +GP +L I+D++
Sbjct: 266 LATKRVIPLVVCFLPGLFVWPLGPFFTQLLRIVDSL 301
>gi|163801672|ref|ZP_02195570.1| hypothetical Flp pilus assembly protein TadC [Vibrio sp. AND4]
gi|159174589|gb|EDP59391.1| hypothetical Flp pilus assembly protein TadC [Vibrio sp. AND4]
Length = 280
Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 85/157 (54%), Gaps = 5/157 (3%)
Query: 170 NLVQKRQSSIKRA----WPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLT 225
+L+Q R+ + R P LD++ +CV++G++I+ AL + +++ L ++ T
Sbjct: 121 SLLQMRRKMLIRKTSAQLPYLLDMMSVCVQTGMTIEAALVYLGKELAEFDSDLCYQIKRT 180
Query: 226 IAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLM 285
++ + + + A + R VR+ +IQ+ ++GTS+ L L + R +++
Sbjct: 181 -SDSAKIQGLEKALTDLSERIPTPPVRSFVLTIIQNLQHGTSVAQILSDLAEDMRKMQIL 239
Query: 286 EAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
E+K L K+++P+IIF + ++++I+ P I+ +
Sbjct: 240 TVEEKVGKLSAKMSLPLIIFIMFPIVILILAPGIMQM 276
>gi|217423679|ref|ZP_03455180.1| type II secretion system protein [Burkholderia pseudomallei 576]
gi|217393537|gb|EEC33558.1| type II secretion system protein [Burkholderia pseudomallei 576]
Length = 336
Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 57/240 (23%), Positives = 110/240 (45%), Gaps = 13/240 (5%)
Query: 90 KAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLR 149
K I+ DE+ + L G+ ++ I L R+ I + + + G + + +
Sbjct: 102 KQIVADEDRM-LLEQCGYVDAHTRGIFLSARIACAIA--LPAAVALVGGETVRTH----- 153
Query: 150 VGAVILIGYV-GFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVA 208
+GA + + + GF P +++ R+ S+ P +D+L + G+S+DQ+++ V
Sbjct: 154 LGAWVALSVIAGFMLPKIYVRRRAAARRQSVVDEMPLLVDMLRLLQGVGLSLDQSIQVVT 213
Query: 209 EDIGGQSVPLSEEMLLTIAELSFLPNR--QVAFENFYNRTQMDCVRNATQALIQSDRYGT 266
D G LS E L IA+ F+ R + + + + +R + LIQ D++G
Sbjct: 214 NDFRGMLPVLSSE--LGIAQRQFVAGRTREQSLQRLATSFDNEDLRAIVRLLIQVDKHGG 271
Query: 267 SIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
++ + L+ R R ++ L K+T MI+ LP L +V GP +L++ +
Sbjct: 272 AVQEPLKQFGDRLREVRRAMLRERIGRLTVKMTGVMILTLLPALFIVTAGPGMLAVTHAL 331
>gi|254179954|ref|ZP_04886553.1| type II secretion system protein [Burkholderia pseudomallei 1655]
gi|184210494|gb|EDU07537.1| type II secretion system protein [Burkholderia pseudomallei 1655]
Length = 340
Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 57/240 (23%), Positives = 110/240 (45%), Gaps = 13/240 (5%)
Query: 90 KAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLR 149
K I+ DE+ + L G+ ++ I L R+ I + + + G + + +
Sbjct: 106 KQIVADEDRM-LLEQCGYVDAHTRGIFLSARIACAIA--LPAAVALVGGETVRTH----- 157
Query: 150 VGAVILIGYV-GFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVA 208
+GA + + + GF P +++ R+ S+ P +D+L + G+S+DQ+++ V
Sbjct: 158 LGAWVALSVIAGFMLPKIYVRRRAAARRQSVVDEMPLLVDMLRLLQGVGLSLDQSIQVVT 217
Query: 209 EDIGGQSVPLSEEMLLTIAELSFLPNR--QVAFENFYNRTQMDCVRNATQALIQSDRYGT 266
D G LS E L IA+ F+ R + + + + +R + LIQ D++G
Sbjct: 218 NDFRGMLPVLSSE--LGIAQRQFVAGRTREQSLQRLATSFDNEDLRAIVRLLIQVDKHGG 275
Query: 267 SIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
++ + L+ R R ++ L K+T MI+ LP L +V GP +L++ +
Sbjct: 276 AVQEPLKQFGDRLREVRRAMLRERIGRLTVKMTGVMILTLLPALFIVTAGPGMLAVTHAL 335
>gi|167902893|ref|ZP_02490098.1| type II secretion system protein [Burkholderia pseudomallei NCTC
13177]
Length = 264
Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 57/240 (23%), Positives = 109/240 (45%), Gaps = 13/240 (5%)
Query: 90 KAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLR 149
K I+ DE+ + L G+ ++ I L R+ I + + + G + + +
Sbjct: 30 KQIVADEDRM-LLEQCGYVDAHTRGIFLSARIACAIA--LPAAVALVGGETVRTH----- 81
Query: 150 VGAVILIGYV-GFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVA 208
+GA + + + GF P ++ R+ S+ P +D+L + G+S+DQ+++ V
Sbjct: 82 LGAWVALSVIAGFMLPKTYVRRRAAARRQSVVDEMPLLVDMLRLLQGVGLSLDQSIQVVT 141
Query: 209 EDIGGQSVPLSEEMLLTIAELSFLPNR--QVAFENFYNRTQMDCVRNATQALIQSDRYGT 266
D G LS E L IA+ F+ R + + + + +R + LIQ D++G
Sbjct: 142 NDFRGMLPVLSSE--LGIAQRQFVAGRTREQSLQRLATSFDNEDLRAIVRLLIQVDKHGG 199
Query: 267 SIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
++ + L+ R R ++ L K+T MI+ LP L +V GP +L++ +
Sbjct: 200 AVQEPLKQFGDRLREVRRAMLRERIGRLTVKMTGVMILTLLPALFIVTAGPGMLAVTHAL 259
>gi|257790324|ref|YP_003180930.1| type II secretion system protein [Eggerthella lenta DSM 2243]
gi|325830281|ref|ZP_08163738.1| type II secretion system protein F domain protein [Eggerthella sp.
HGA1]
gi|257474221|gb|ACV54541.1| type II secretion system protein [Eggerthella lenta DSM 2243]
gi|325487748|gb|EGC90186.1| type II secretion system protein F domain protein [Eggerthella sp.
HGA1]
Length = 313
Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 47/147 (31%), Positives = 77/147 (52%), Gaps = 4/147 (2%)
Query: 163 APSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEM 222
APS +S + R+ +I+ A PDA++LL I + +G I+Q R VAE + G PL+ E
Sbjct: 147 APSWALSRRERNRRRAIELALPDAMELLGIAIAAGSPIEQCFREVAESMDG---PLAREF 203
Query: 223 LLTIAELSFLP-NRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRS 281
L E++ L +R+ A E+ R + V T L+Q+ G+S+ + L V + R
Sbjct: 204 SLVDREVNLLGRSREEALEHLGQRCRSQDVSAFTAQLMQAVSQGSSLTEGLAVQAALARE 263
Query: 282 ERLMEAEKKAASLGPKLTVPMIIFFLP 308
EA ++ + KL + + + FLP
Sbjct: 264 TAQAEAMERIRKMPTKLDIVLSLCFLP 290
>gi|237812071|ref|YP_002896522.1| type II secretion system protein [Burkholderia pseudomallei
MSHR346]
gi|237506289|gb|ACQ98607.1| type II secretion system protein [Burkholderia pseudomallei
MSHR346]
Length = 340
Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 57/240 (23%), Positives = 110/240 (45%), Gaps = 13/240 (5%)
Query: 90 KAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLR 149
K I+ DE+ + L G+ ++ I L R+ I + + + G + + +
Sbjct: 106 KQIVADEDRM-LLEQCGYVDAHTRGIFLSARIACAIA--LPAAVALVGGETVRTH----- 157
Query: 150 VGAVILIGYV-GFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVA 208
+GA + + + GF P +++ R+ S+ P +D+L + G+S+DQ+++ V
Sbjct: 158 LGAWVALSVIAGFMLPKIYVRRRAAARRQSVVDEMPLLVDMLRLLQGVGLSLDQSIQVVT 217
Query: 209 EDIGGQSVPLSEEMLLTIAELSFLPNR--QVAFENFYNRTQMDCVRNATQALIQSDRYGT 266
D G LS E L IA+ F+ R + + + + +R + LIQ D++G
Sbjct: 218 NDFRGMLPVLSSE--LGIAQRQFVAGRTREQSLQRLATSFDNEDLRAIVRLLIQVDKHGG 275
Query: 267 SIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
++ + L+ R R ++ L K+T MI+ LP L +V GP +L++ +
Sbjct: 276 AVQEPLKQFGDRLREVRRAMLRERIGRLTVKMTGVMILTLLPALFIVTAGPGMLAVTHAL 335
>gi|254197742|ref|ZP_04904164.1| type II secretion system protein [Burkholderia pseudomallei S13]
gi|169654483|gb|EDS87176.1| type II secretion system protein [Burkholderia pseudomallei S13]
Length = 340
Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 57/240 (23%), Positives = 110/240 (45%), Gaps = 13/240 (5%)
Query: 90 KAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLR 149
K I+ DE+ + L G+ ++ I L R+ I + + + G + + +
Sbjct: 106 KQIVADEDRM-LLEQCGYVDAHTRGIFLSARIACAIA--LPAAVALVGGETVRTH----- 157
Query: 150 VGAVILIGYV-GFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVA 208
+GA + + + GF P +++ R+ S+ P +D+L + G+S+DQ+++ V
Sbjct: 158 LGAWVALSVIAGFMLPKIYVRRRAAARRQSVVDEMPLLVDMLRLLQGVGLSLDQSIQVVT 217
Query: 209 EDIGGQSVPLSEEMLLTIAELSFLPNR--QVAFENFYNRTQMDCVRNATQALIQSDRYGT 266
D G LS E L IA+ F+ R + + + + +R + LIQ D++G
Sbjct: 218 NDFRGMLPVLSSE--LGIAQRQFVAGRTREQSLQRLATSFDNEDLRAIVRLLIQVDKHGG 275
Query: 267 SIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
++ + L+ R R ++ L K+T MI+ LP L +V GP +L++ +
Sbjct: 276 AVQEPLKQFGDRLREVRRAMLRERIGRLTVKMTGVMILTLLPALFIVTAGPGMLAVTHAL 335
>gi|167836788|ref|ZP_02463671.1| type II secretion system protein [Burkholderia thailandensis
MSMB43]
Length = 267
Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 82/176 (46%), Gaps = 4/176 (2%)
Query: 153 VILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIG 212
V L GF P +++ R+ S+ P +D+L + G+S+DQ+++ V D
Sbjct: 89 VALCVIAGFMLPKIYVRRRAAARRQSVVDEMPLLVDMLRLLQGVGLSLDQSIQVVTNDFK 148
Query: 213 GQSVPLSEEMLLTIAELSFLPNR--QVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGD 270
G LS E L IA+ F+ R + + + + +R + LIQ D++G ++ +
Sbjct: 149 GMLPVLSSE--LGIAQRQFVAGRTREQSLQRLATSFDNEDLRAIVRLLIQVDKHGGAVQE 206
Query: 271 SLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
L+ R R ++ L K+T MI+ LP L +V GP +L++ +
Sbjct: 207 PLKQFGDRLREVRRAMLRERIGRLTVKMTGVMILTLLPALFIVTAGPGMLAVTHAL 262
>gi|317489773|ref|ZP_07948272.1| hypothetical protein HMPREF1023_01971 [Eggerthella sp. 1_3_56FAA]
gi|316911119|gb|EFV32729.1| hypothetical protein HMPREF1023_01971 [Eggerthella sp. 1_3_56FAA]
Length = 301
Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 47/149 (31%), Positives = 78/149 (52%), Gaps = 4/149 (2%)
Query: 161 FCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSE 220
+ APS +S + R+ +I+ A PDA++LL I + +G I+Q R VAE + G PL+
Sbjct: 133 WMAPSWALSRRERNRRRAIELALPDAMELLGIAIAAGSPIEQCFREVAESMDG---PLAR 189
Query: 221 EMLLTIAELSFLP-NRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSET 279
E L E++ L +R+ A E+ R + V T L+Q+ G+S+ + L V +
Sbjct: 190 EFSLVDREVNLLGRSREEALEHLGQRCRSQDVSAFTAQLMQAVSQGSSLTEGLAVQAALA 249
Query: 280 RSERLMEAEKKAASLGPKLTVPMIIFFLP 308
R EA ++ + KL + + + FLP
Sbjct: 250 RETAQAEAMERIRKMPTKLDIVLSLCFLP 278
>gi|167824379|ref|ZP_02455850.1| type II secretion system protein [Burkholderia pseudomallei 9]
Length = 266
Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 57/240 (23%), Positives = 109/240 (45%), Gaps = 13/240 (5%)
Query: 90 KAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLR 149
K I+ DE+ + L G+ ++ I L R+ I + + + G + + +
Sbjct: 32 KQIVADEDRM-LLEQCGYVDAHTRGIFLSARIACAIA--LPAAVALVGGETVRTH----- 83
Query: 150 VGAVILIGYV-GFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVA 208
+GA + + + GF P ++ R+ S+ P +D+L + G+S+DQ+++ V
Sbjct: 84 LGAWVALSVIAGFMLPKTYVRRRAAARRQSVVDEMPLLVDMLRLLQGVGLSLDQSIQVVT 143
Query: 209 EDIGGQSVPLSEEMLLTIAELSFLPNR--QVAFENFYNRTQMDCVRNATQALIQSDRYGT 266
D G LS E L IA+ F+ R + + + + +R + LIQ D++G
Sbjct: 144 NDFRGMLPVLSSE--LGIAQRQFVAGRTREQSLQRLATSFDNEDLRAIVRLLIQVDKHGG 201
Query: 267 SIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
++ + L+ R R ++ L K+T MI+ LP L +V GP +L++ +
Sbjct: 202 AVQEPLKQFGDRLREVRRAMLRERIGRLTVKMTGVMILTLLPALFIVTAGPGMLAVTHAL 261
>gi|83718806|ref|YP_443055.1| hypothetical protein BTH_I2538 [Burkholderia thailandensis E264]
gi|83652631|gb|ABC36694.1| membrane protein, putative [Burkholderia thailandensis E264]
Length = 373
Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 80/169 (47%), Gaps = 4/169 (2%)
Query: 160 GFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLS 219
GF P +++ R+ S+ P +D+L + G+S+DQ+++ V D G LS
Sbjct: 202 GFMLPKIYVRRRAAARRQSVVDEMPLLVDMLRLLQGVGLSLDQSIQVVTNDFKGMLPVLS 261
Query: 220 EEMLLTIAELSFLPNR--QVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVS 277
E L IA+ F+ R + + + + +R + LIQ D++G ++ + L+
Sbjct: 262 SE--LGIAQRQFVAGRTREQSLQRLATSFDNEDLRAIVRLLIQVDKHGGAVQEPLKQFGD 319
Query: 278 ETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
R R ++ L K+T MI+ LP L +V GP +L++ +
Sbjct: 320 RLREVRRAMLRERIGRLTVKMTGVMILTLLPALFIVTAGPGMLAVTHAL 368
>gi|167816004|ref|ZP_02447684.1| type II secretion system protein [Burkholderia pseudomallei 91]
Length = 272
Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 57/240 (23%), Positives = 109/240 (45%), Gaps = 13/240 (5%)
Query: 90 KAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLR 149
K I+ DE+ + L G+ ++ I L R+ I + + + G + + +
Sbjct: 38 KQIVADEDRM-LLEQCGYVDAHTRGIFLSARIACAIA--LPAAVALVGGETVRTH----- 89
Query: 150 VGAVILIGYV-GFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVA 208
+GA + + + GF P ++ R+ S+ P +D+L + G+S+DQ+++ V
Sbjct: 90 LGAWVALSVIAGFMLPKTYVRRRAAARRQSVVDEMPLLVDMLRLLQGVGLSLDQSIQVVT 149
Query: 209 EDIGGQSVPLSEEMLLTIAELSFLPNR--QVAFENFYNRTQMDCVRNATQALIQSDRYGT 266
D G LS E L IA+ F+ R + + + + +R + LIQ D++G
Sbjct: 150 NDFRGMLPVLSSE--LGIAQRQFVAGRTREQSLQRLATSFDNEDLRAIVRLLIQVDKHGG 207
Query: 267 SIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
++ + L+ R R ++ L K+T MI+ LP L +V GP +L++ +
Sbjct: 208 AVQEPLKQFGDRLREVRRAMLRERIGRLTVKMTGVMILTLLPALFIVTAGPGMLAVTHAL 267
>gi|167719782|ref|ZP_02403018.1| type II secretion system protein [Burkholderia pseudomallei DM98]
Length = 273
Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 57/240 (23%), Positives = 109/240 (45%), Gaps = 13/240 (5%)
Query: 90 KAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLR 149
K I+ DE+ + L G+ ++ I L R+ I + + + G + + +
Sbjct: 39 KQIVADEDRM-LLEQCGYVDAHTRGIFLSARIACAIA--LPAAVALVGGETVRTH----- 90
Query: 150 VGAVILIGYV-GFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVA 208
+GA + + + GF P ++ R+ S+ P +D+L + G+S+DQ+++ V
Sbjct: 91 LGAWVALSVIAGFMLPKTYVRRRAAARRQSVVDEMPLLVDMLRLLQGVGLSLDQSIQVVT 150
Query: 209 EDIGGQSVPLSEEMLLTIAELSFLPNR--QVAFENFYNRTQMDCVRNATQALIQSDRYGT 266
D G LS E L IA+ F+ R + + + + +R + LIQ D++G
Sbjct: 151 NDFRGMLPVLSSE--LGIAQRQFVAGRTREQSLQRLATSFDNEDLRAIVRLLIQVDKHGG 208
Query: 267 SIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
++ + L+ R R ++ L K+T MI+ LP L +V GP +L++ +
Sbjct: 209 AVQEPLKQFGDRLREVRRAMLRERIGRLTVKMTGVMILTLLPALFIVTAGPGMLAVTHAL 268
>gi|170696831|ref|ZP_02887931.1| type II secretion system protein [Burkholderia graminis C4D1M]
gi|170138259|gb|EDT06487.1| type II secretion system protein [Burkholderia graminis C4D1M]
Length = 372
Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 41/176 (23%), Positives = 86/176 (48%), Gaps = 1/176 (0%)
Query: 153 VILIGYV-GFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDI 211
V+++ ++ G AP + + R+ ++ P +DLL + G+S+DQ+L+ + D
Sbjct: 193 VVIVAFMCGVMAPKLVLRRRAAARRGAVVDELPMLVDLLRLLQGVGLSLDQSLQVMVNDF 252
Query: 212 GGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDS 271
G L+ E+ + + + R+ + + + +R + LIQ DR+G ++ +
Sbjct: 253 RGVLPVLASELEIAQGQFAAGRTREQSLSRLASSFDNEDLRAVVRLLIQVDRHGGAVQEP 312
Query: 272 LRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
L+ R R ++ + K+T MI+ LP L++V GP ++S+ ++K
Sbjct: 313 LKQFGDRLRETRRAMLRERIGRMAVKMTGVMILTLLPALMIVTAGPGVMSVSHSLK 368
>gi|225375137|ref|ZP_03752358.1| hypothetical protein ROSEINA2194_00761 [Roseburia inulinivorans DSM
16841]
gi|225213011|gb|EEG95365.1| hypothetical protein ROSEINA2194_00761 [Roseburia inulinivorans DSM
16841]
Length = 415
Score = 59.3 bits (142), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 67/259 (25%), Positives = 115/259 (44%), Gaps = 23/259 (8%)
Query: 76 DSKSLR-NFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIW 134
DS++L F ++ K E I NKL+ + N L++P IIW
Sbjct: 167 DSQTLEYQFFFQICPKIYSEKEKINNKLKQELIKKNEKTND---STLILPESIDDQTIIW 223
Query: 135 IFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQ---KRQSSIKRAWPDALDLLL 191
+++ P +L + +I G C P V S + +R+ ++ +P+ + L
Sbjct: 224 KEKSERM---PLKLLLLGMIAAG----CVPLVEKSRKQEEEKRRKEKLQSEYPELVSKLT 276
Query: 192 ICVESGISIDQALRRVAEDIGGQSV-------PLSEEMLLTIAELSFLPNRQVAFENFYN 244
I + +G+++ A ++A + PL EEML+T E+ A+E F
Sbjct: 277 ILLGAGMTLFSAWNKIATSYSNKRKNNTIPIHPLYEEMLITCHEIESGVGEARAYERFGE 336
Query: 245 RTQMDCVRNATQALIQSDRYGT-SIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMI 303
R + R L+Q+ R GT + L VS+ ER A+K G K+ PM+
Sbjct: 337 RCGLHRYRKFCSLLVQNLRKGTRGLVQLLEQEVSDAFEERKNLAKKSGEEAGTKMLFPMM 396
Query: 304 IFFLPVLILVIIGPAILSI 322
+ F ++I++I+ PA LS+
Sbjct: 397 MMF-GIIIVIIMVPAFLSL 414
>gi|226196329|ref|ZP_03791911.1| type II secretion system protein [Burkholderia pseudomallei
Pakistan 9]
gi|225931546|gb|EEH27551.1| type II secretion system protein [Burkholderia pseudomallei
Pakistan 9]
Length = 338
Score = 59.3 bits (142), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 57/240 (23%), Positives = 109/240 (45%), Gaps = 13/240 (5%)
Query: 90 KAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLR 149
K I+ DE+ + L G+ ++ I L R+ I + + + G + + +
Sbjct: 104 KQIVADEDRM-LLEQCGYVDAHTRGIFLSARIACAIA--LPAAVALVGGETVRTH----- 155
Query: 150 VGAVILIGYV-GFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVA 208
+GA + + + GF P ++ R+ S+ P +D+L + G+S+DQ+++ V
Sbjct: 156 LGAWVALSVIAGFMLPKTYVRRRAAARRQSVVDEMPLLVDMLRLLQGVGLSLDQSIQVVT 215
Query: 209 EDIGGQSVPLSEEMLLTIAELSFLPNR--QVAFENFYNRTQMDCVRNATQALIQSDRYGT 266
D G LS E L IA+ F+ R + + + + +R + LIQ D++G
Sbjct: 216 NDFRGMLPVLSSE--LGIAQRQFVAGRTREQSLQRLATSFDNEDLRAIVRLLIQVDKHGG 273
Query: 267 SIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
++ + L+ R R ++ L K+T MI+ LP L +V GP +L++ +
Sbjct: 274 AVQEPLKQFGDRLREVRRAMLRERIGRLTVKMTGVMILTLLPALFIVTAGPGMLAVTHAL 333
>gi|126442067|ref|YP_001058811.1| type II secretion system protein [Burkholderia pseudomallei 668]
gi|134282402|ref|ZP_01769107.1| type II secretion system protein [Burkholderia pseudomallei 305]
gi|126221560|gb|ABN85066.1| type II secretion system protein [Burkholderia pseudomallei 668]
gi|134246440|gb|EBA46529.1| type II secretion system protein [Burkholderia pseudomallei 305]
Length = 340
Score = 59.3 bits (142), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 57/240 (23%), Positives = 109/240 (45%), Gaps = 13/240 (5%)
Query: 90 KAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLR 149
K I+ DE+ + L G+ ++ I L R+ I + + + G + + +
Sbjct: 106 KQIVADEDRM-LLEQCGYVDAHTRGIFLSARIACAIA--LPAAVALVGGETVRTH----- 157
Query: 150 VGAVILIGYV-GFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVA 208
+GA + + + GF P ++ R+ S+ P +D+L + G+S+DQ+++ V
Sbjct: 158 LGAWVALSVIAGFMLPKTYVRRRAAARRQSVVDEMPLLVDMLRLLQGVGLSLDQSIQVVT 217
Query: 209 EDIGGQSVPLSEEMLLTIAELSFLPNR--QVAFENFYNRTQMDCVRNATQALIQSDRYGT 266
D G LS E L IA+ F+ R + + + + +R + LIQ D++G
Sbjct: 218 NDFRGMLPVLSSE--LGIAQRQFVAGRTREQSLQRLATSFDNEDLRAIVRLLIQVDKHGG 275
Query: 267 SIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
++ + L+ R R ++ L K+T MI+ LP L +V GP +L++ +
Sbjct: 276 AVQEPLKQFGDRLREVRRAMLRERIGRLTVKMTGVMILTLLPALFIVTAGPGMLAVTHAL 335
>gi|53719505|ref|YP_108491.1| putative outer-membrane protein [Burkholderia pseudomallei K96243]
gi|52209919|emb|CAH35891.1| putative outer-membrane protein [Burkholderia pseudomallei K96243]
Length = 341
Score = 59.3 bits (142), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 57/240 (23%), Positives = 109/240 (45%), Gaps = 13/240 (5%)
Query: 90 KAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLR 149
K I+ DE+ + L G+ ++ I L R+ I + + + G + + +
Sbjct: 107 KQIVADEDRM-LLEQCGYVDAHTRGIFLSARIACAIA--LPAAVALVGGETVRTH----- 158
Query: 150 VGAVILIGYV-GFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVA 208
+GA + + + GF P ++ R+ S+ P +D+L + G+S+DQ+++ V
Sbjct: 159 LGAWVALSVIAGFMLPKTYVRRRAAARRQSVVDEMPLLVDMLRLLQGVGLSLDQSIQVVT 218
Query: 209 EDIGGQSVPLSEEMLLTIAELSFLPNR--QVAFENFYNRTQMDCVRNATQALIQSDRYGT 266
D G LS E L IA+ F+ R + + + + +R + LIQ D++G
Sbjct: 219 NDFRGMLPVLSSE--LGIAQRQFVAGRTREQSLQRLATSFDNEDLRAIVRLLIQVDKHGG 276
Query: 267 SIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
++ + L+ R R ++ L K+T MI+ LP L +V GP +L++ +
Sbjct: 277 AVQEPLKQFGDRLREVRRAMLRERIGRLTVKMTGVMILTLLPALFIVTAGPGMLAVTHAL 336
>gi|32452628|gb|AAP43990.1| TadC [Aggregatibacter actinomycetemcomitans]
Length = 288
Score = 59.3 bits (142), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 61/269 (22%), Positives = 131/269 (48%), Gaps = 20/269 (7%)
Query: 56 RKQQITSLQ-KDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLN 114
RK+ IT + KD ++ + SK +++ L+ +L++ N + K+ ++
Sbjct: 33 RKEVITGERPKDQSNDEIAKGKSK------QQIELELLLINNNPILKMLGIIDKN----- 81
Query: 115 ILLVVRLVVPIIFLILGIIWIFGY-DKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQ 173
+++ + I+ L+ G+ +++ DK + L ILI V P + I ++++
Sbjct: 82 ----IKVKLLIMILLCGVYYLYSLIDKTTDSSSLLFGFLTILI--VTIVIPGILIGSILK 135
Query: 174 KRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLP 233
+ I +DL+ + +++G+ I+ AL+ VA D + L+ ML I + S +
Sbjct: 136 SKIKKIMNDLAGFIDLVAVNLQTGMGIEAALKHVATDFKILNPDLTYVMLRIIRK-SEIT 194
Query: 234 NRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAAS 293
A ++ +R + QS +G+SI L L ++ R +L+ E+K +
Sbjct: 195 GMSQALQDLSVSLPTAEIRMFCTVMQQSLNFGSSIYHQLVQLSTDIREIQLLAIEEKLGT 254
Query: 294 LGPKLTVPMIIFFLPVLILVIIGPAILSI 322
L K++VP+I+F + +I++I+ P ++ +
Sbjct: 255 LSAKMSVPLILFIMFPIIILILAPGVMRV 283
>gi|293391327|ref|ZP_06635661.1| Flp pilus assembly protein TadC [Aggregatibacter
actinomycetemcomitans D7S-1]
gi|290951861|gb|EFE01980.1| Flp pilus assembly protein TadC [Aggregatibacter
actinomycetemcomitans D7S-1]
Length = 288
Score = 58.9 bits (141), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 61/269 (22%), Positives = 131/269 (48%), Gaps = 20/269 (7%)
Query: 56 RKQQITSLQ-KDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLN 114
RK+ IT + KD ++ + SK +++ L+ +L++ N + K+ ++
Sbjct: 33 RKEVITGERPKDQSNDEIAKGKSK------QQIELELLLINNNPILKMLGIIDKN----- 81
Query: 115 ILLVVRLVVPIIFLILGIIWIFGY-DKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQ 173
+++ + I+ L+ G+ +++ DK + L ILI V P + I ++++
Sbjct: 82 ----IKVKLLIMILLCGVYYLYSLIDKTTDSSSLLFGFLTILI--VTIVIPGILIGSILK 135
Query: 174 KRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLP 233
+ I +DL+ + +++G+ I+ AL+ VA D + L+ ML I + S +
Sbjct: 136 SKIKKIMNDLAGFIDLVAVNLQTGMGIEAALKHVATDFKILNPDLTYVMLRIIRK-SEIT 194
Query: 234 NRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAAS 293
A ++ +R + QS +G+SI L L ++ R +L+ E+K +
Sbjct: 195 GMSQALQDLSVSLPTAEIRMFCTVMQQSLNFGSSIYHQLVQLSTDIREIQLLAIEEKLGT 254
Query: 294 LGPKLTVPMIIFFLPVLILVIIGPAILSI 322
L K++VP+I+F + +I++I+ P ++ +
Sbjct: 255 LSAKMSVPLILFIMFPIIILILAPGVMRV 283
>gi|152983555|ref|YP_001350203.1| hypothetical protein PSPA7_4867 [Pseudomonas aeruginosa PA7]
gi|150958713|gb|ABR80738.1| hypothetical protein PSPA7_4867 [Pseudomonas aeruginosa PA7]
Length = 303
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/164 (24%), Positives = 79/164 (48%)
Query: 159 VGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPL 218
+GF P + + + R++ I + L+ I ++G++++QALR V ++ G + L
Sbjct: 132 IGFLLPKQVLKHFAKARRALIAEEMILFVQLIRILFDAGLTVEQALRVVCQEGRGITPQL 191
Query: 219 SEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSE 278
+ E+ L +A + E R Q+D + + L Q R G S +L L
Sbjct: 192 ARELDLALARAGNGIDLAEELEALARRLQVDPLNDCCGVLRQMLRQGGSARGTLLTLKQL 251
Query: 279 TRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
RL +++ L K+++ M++ P L++V+ GP +++I
Sbjct: 252 FEDRRLTTLQERIGKLSAKMSLVMMVLLFPALLIVLAGPGVIAI 295
>gi|262275464|ref|ZP_06053274.1| type II/IV secretion system protein TadC associated with Flp pilus
assembly [Grimontia hollisae CIP 101886]
gi|262220709|gb|EEY72024.1| type II/IV secretion system protein TadC associated with Flp pilus
assembly [Grimontia hollisae CIP 101886]
Length = 288
Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/162 (22%), Positives = 81/162 (50%), Gaps = 5/162 (3%)
Query: 164 PSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGG--QSVPLSEE 221
P +++ + I R P LD++ +CV++G++I+ ++ + ++ + + +
Sbjct: 129 PDLYLEMRRRALARKITRQLPYLLDIMGVCVQTGMTIESSIFYLTTEMAAFDKDIAYVLK 188
Query: 222 MLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRS 281
L A+ L + +M L QS ++GTSI ++L +L + R
Sbjct: 189 RLRDRAQTKGLEKALLELNEHVPAPEMHSF---VMTLTQSMQHGTSIYEALSILAKDIRE 245
Query: 282 ERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSII 323
+L+ E+KA L K++VP+I+F + ++++I P I+ ++
Sbjct: 246 IQLLSLEEKAGKLSSKMSVPLILFIMMPIVILITAPGIMRML 287
>gi|311697136|gb|ADQ00008.1| type II secretion system protein-like protein [marine bacterium
HP15]
Length = 290
Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 71/138 (51%), Gaps = 8/138 (5%)
Query: 194 VESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFL----PNRQVAFENFYNRTQMD 249
VE+G+S +++L+ ++ Q+ L ++ I + + +R VA + +
Sbjct: 156 VEAGLSPERSLKLISH----QARELMPRLIRRIDRFNRVMESGADRTVALDELGKNRNLT 211
Query: 250 CVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPV 309
+RN + QS G+ + L +V E + E +++ +G ++TV M++F LP
Sbjct: 212 VLRNYVSLMKQSGTLGSKVAGGLDQIVEEAQHEERSNLKEETNKIGARMTVIMMVFMLPS 271
Query: 310 LILVIIGPAILSIIDTMK 327
L L+I GPA+L+I+D +
Sbjct: 272 LFLLIGGPAVLAIMDAFQ 289
>gi|297568749|ref|YP_003690093.1| Type II secretion system F domain protein [Desulfurivibrio
alkaliphilus AHT2]
gi|296924664|gb|ADH85474.1| Type II secretion system F domain protein [Desulfurivibrio
alkaliphilus AHT2]
Length = 305
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 71/140 (50%), Gaps = 2/140 (1%)
Query: 184 PDALDLLLICVESGISIDQALRRVAEDIGGQSVP-LSEEMLLTIAELSFLPNRQVAFENF 242
P LL + +E+G+ +DQAL VA D + +P S+E+ + + ++ R
Sbjct: 159 PMLAQLLRVLIEAGLGLDQALLTVATD-NREIIPACSQELSVVMRQVEQGAERGTTLLAM 217
Query: 243 YNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPM 302
+ +++ + L Q RYG ++ D LR V+ R ++ +++ L +T+ +
Sbjct: 218 ARTLDVQELQDLCEMLRQVYRYGGNVRDPLREFVALLYDRRRIKLQERVGKLAGSMTIIV 277
Query: 303 IIFFLPVLILVIIGPAILSI 322
IIFF P L+ V+ GP ++I
Sbjct: 278 IIFFFPALLAVVAGPGFIAI 297
>gi|110833084|ref|YP_691943.1| hypothetical protein ABO_0223 [Alcanivorax borkumensis SK2]
gi|110646195|emb|CAL15671.1| conserved hypothetical protein [Alcanivorax borkumensis SK2]
Length = 286
Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 45/180 (25%), Positives = 87/180 (48%), Gaps = 14/180 (7%)
Query: 154 ILIGYVGFCAPSVW---ISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAED 210
+ +G VGF + ++ + RQ+ + L +LL E+G+SI++A R A
Sbjct: 112 LFLGVVGFIGSRRYFRSVAKVACHRQNQEAIEFAQLLSMLL---EAGLSIERAFRVAAV- 167
Query: 211 IGGQSVPLSEEMLLTIAELSFL----PNRQVAFENFYNRTQMDCVRNATQALIQSDRYGT 266
QS P+ ++ + + L R VA + Q+ + + T+ L Q G
Sbjct: 168 ---QSRPMIPGLVHRLDRFNRLMESGAERGVALDEIGEGKQIPVLHSLTRLLKQGGALGG 224
Query: 267 SIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
+I +S+ L+ E + +++ +G K+TV M+IF +P L +++ GPA ++I+ +
Sbjct: 225 AISESIEQLILEAQDVEKSRIKEEVNRVGAKMTVAMMIFMMPALFIIVGGPAGVNIVQAI 284
>gi|114798049|ref|YP_761687.1| secretion system protein [Hyphomonas neptunium ATCC 15444]
gi|114738223|gb|ABI76348.1| secretion system protein [Hyphomonas neptunium ATCC 15444]
Length = 339
Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 56/224 (25%), Positives = 106/224 (47%), Gaps = 15/224 (6%)
Query: 97 NIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLR-----VG 151
NI +KL AG E + + ++ V +I GI++I G D L+ L+ +
Sbjct: 83 NIGSKLTQAGL--EIPVPMFWLLSAVCGLI--CAGIVYISGADGLVINGISLKSRPVLIA 138
Query: 152 AVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDI 211
A G +G P ++ L++ R + + + DALD+++ V SG+ +++ +R +A++
Sbjct: 139 AAFFGGTLGI--PQFILNFLIKGRHTKMINQFADALDIIVRGVRSGLPLNECIRVIAKE- 195
Query: 212 GGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDS 271
PL +E L L+ + + Y R + + LI + G ++ ++
Sbjct: 196 --SPEPLRKEFLTFADNLAMGAGLERSLAALYKRLPLQEINFFAIVLIIQSKAGGNLSEA 253
Query: 272 LRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVII 315
L L + RS ++M + KA S K + MII LP+ + V++
Sbjct: 254 LHNLSTVIRSRKMMREKVKALSSEAKASA-MIIGSLPIAVGVMV 296
>gi|149927029|ref|ZP_01915287.1| putative tight adherence tadc related transmembrane protein
[Limnobacter sp. MED105]
gi|149824250|gb|EDM83470.1| putative tight adherence tadc related transmembrane protein
[Limnobacter sp. MED105]
Length = 317
Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 69/290 (23%), Positives = 137/290 (47%), Gaps = 21/290 (7%)
Query: 42 EKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNK 101
EK + + E+ RK Q ++ ++ + + T + L K V+E
Sbjct: 33 EKALARIDEYTELRRKVQSSANMRNQVPTSVLTGRIERLGQQFSKTKAFTYFVEEEDKKL 92
Query: 102 LRAAGFRSEYSLNILLVVRLVVPIIFLILGII--WIFGYDKLLEYPFQLRVGAVILIGYV 159
L AGF E L+ +++R+ + ++ L++G+ W G+ + P VI + +
Sbjct: 93 LGRAGFGREEDLSRFVLIRIALGLLGLLIGLFLNWDAGFGAI---PMI----QVIAVTGI 145
Query: 160 GFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLS 219
GF AP ++ + + R+++ +R +D++ + G+S+DQ++ + + VP++
Sbjct: 146 GFMAPKWYLKTVGEGREAAFERELVAVVDVMRLLQGVGLSVDQSIEVMTSQLY-DLVPIT 204
Query: 220 EEMLL-TIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSE 278
ML + A++ V + + D ++ Q L Q +++G ++ + L+
Sbjct: 205 GRMLRRSRAQVKSGVPWIVMLKRMSSMYSSDEFKSFVQVLEQIEKFGGAVQEPLKQF--- 261
Query: 279 TRSERLMEAEKKAAS-----LGPKLTVPMIIFFLPVLILVIIGPAILSII 323
S+RL+E E+ A L KLT M+I LP L+++ GP I+SII
Sbjct: 262 --SDRLVEKERANAKETMGKLTVKLTGVMVITMLPALLIMTGGPGIISII 309
>gi|256827715|ref|YP_003151674.1| Flp pilus assembly protein TadC [Cryptobacterium curtum DSM 15641]
gi|256583858|gb|ACU94992.1| Flp pilus assembly protein TadC [Cryptobacterium curtum DSM 15641]
Length = 306
Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 35/149 (23%), Positives = 75/149 (50%), Gaps = 2/149 (1%)
Query: 175 RQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPN 234
R+ ++R +AL +L + + SG+S D+AL + ++ SE +A ++ L
Sbjct: 157 RKKQMERHLSEALSILCLGLRSGLSFDRALEKYCASF--PTMLASELSGAHMAWMTGLTT 214
Query: 235 RQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASL 294
R A ++ +R ++++S R+G + D+L L +E R R +++
Sbjct: 215 RTEALHAVASKYDSPLIRRVMDSIVRSMRFGAPLADALDELAAEARLARKALLDEEVMKA 274
Query: 295 GPKLTVPMIIFFLPVLILVIIGPAILSII 323
K+ +P+ LP ++L+++GP +L ++
Sbjct: 275 PVKMMIPVGTLILPSMLLMVLGPVLLDLV 303
>gi|260892929|ref|YP_003239026.1| Type II secretion system F domain protein [Ammonifex degensii KC4]
gi|260865070|gb|ACX52176.1| Type II secretion system F domain protein [Ammonifex degensii KC4]
Length = 305
Score = 55.8 bits (133), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 75/140 (53%), Gaps = 3/140 (2%)
Query: 184 PDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFY 243
P+ +DLL + VE+G+ + AL RV E + G PL +E+ + E+ R+ A
Sbjct: 162 PEVIDLLTVSVEAGLGFEGALTRVVEKMDG---PLPQEICRALQEIRVGRPRREALREMA 218
Query: 244 NRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMI 303
R ++ + + A+I +++ G S+ LR+ E R R +A++ A K+ +P++
Sbjct: 219 QRIGVEELLSFVGAVIMAEQMGVSLARVLRLQSQEIRRRRRQQAQEAAFKAPVKMLLPLV 278
Query: 304 IFFLPVLILVIIGPAILSII 323
+ P +V++GPA+L I+
Sbjct: 279 LCIFPATFVVLLGPAVLRIM 298
>gi|299069494|emb|CBJ40763.1| Type II secretion system protein [Ralstonia solanacearum CMR15]
Length = 324
Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 52/247 (21%), Positives = 102/247 (41%), Gaps = 26/247 (10%)
Query: 88 NLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQ 147
L +V E L G+ E + + R+++P ++G+++ + + L
Sbjct: 89 GLGHRIVTEEDRKLLEECGYYGEQARTVFGGTRILLPPFLCVVGVLYAASFREAL----- 143
Query: 148 LRVGAVILIGYVGFC----APSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQA 203
L G+ GF AP ++ R+ + P +D+L + G+SIDQ+
Sbjct: 144 -------LCGFAGFALGYLAPKWLLARRKASRRHRLDDELPVMVDMLRLLQGVGLSIDQS 196
Query: 204 LRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDR 263
L+ +A + G L++E + + R+ + ++ L Q DR
Sbjct: 197 LQVIANEFHGMLPVLADEFGRANQQFASGRPREQTLLRISRLFDNEDLKGLITLLTQVDR 256
Query: 264 YGTSIGDSLR---VLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAIL 320
+G ++ + LR + + E R RL E KLTV M + + L+++ GP +
Sbjct: 257 FGGAVQEPLRQFGLRLQENRRSRLKERVG-------KLTVKMTVVMVLTLLIITAGPGFM 309
Query: 321 SIIDTMK 327
S+ ++
Sbjct: 310 SVTRSLH 316
>gi|187923649|ref|YP_001895291.1| type II secretion system protein [Burkholderia phytofirmans PsJN]
gi|187714843|gb|ACD16067.1| type II secretion system protein [Burkholderia phytofirmans PsJN]
Length = 336
Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/227 (23%), Positives = 104/227 (45%), Gaps = 9/227 (3%)
Query: 102 LRAAGFRSEYSLNILLVVRLVVPIIFLIL-GIIWIFGYDKLLEYPFQLRVGAVILIGYV- 159
L GF + + L+ RLV ++ +L G + D R GA++++ +
Sbjct: 112 LEQCGFVDTRTRGLFLLARLVGALVLPVLAGTLASTHLDGS-------RYGALVIVAVMA 164
Query: 160 GFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLS 219
GF P + + KR+ ++ P +DLL + G+S+DQ+L+ V D G L+
Sbjct: 165 GFMLPKLVLRRRAGKRRHAVVDELPLLVDLLRLLQGVGLSLDQSLQVVVNDFRGMLPVLA 224
Query: 220 EEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSET 279
E+ + + + R+ + + + +R + L+Q D +G ++ + L+
Sbjct: 225 GELEIAQRQFAAGRTREQSLNRLASSYDNEDLRAVVRLLVQVDLHGGAVQEPLKQFGDRL 284
Query: 280 RSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
R R ++ L K+T MI+ LP L++V GP +L++ ++
Sbjct: 285 REARRAMLRERIGRLAVKMTGVMIVTLLPALMIVTAGPGVLAVQHSL 331
>gi|254451819|ref|ZP_05065256.1| type II/IV secretion system protein, TadC subfamily [Octadecabacter
antarcticus 238]
gi|198266225|gb|EDY90495.1| type II/IV secretion system protein, TadC subfamily [Octadecabacter
antarcticus 238]
Length = 122
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 62/117 (52%)
Query: 204 LRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDR 263
+ RVA+++ + +SEE L+ AE+ +R+ A + R ++ V + + QS
Sbjct: 1 MTRVAQNLSMVNPAISEEFLMCQAEILAGRHREQALVDMAERIGVEEVNSFVALISQSME 60
Query: 264 YGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAIL 320
YGTSI S+ E R R ++A++KA L +++ M LP L L+ +GP I+
Sbjct: 61 YGTSISASMNAYAIEMRDAREIKAQEKANKLPVQMSGVMASMMLPALFLITLGPTII 117
>gi|284045232|ref|YP_003395572.1| type II secretion system F domain protein [Conexibacter woesei DSM
14684]
gi|283949453|gb|ADB52197.1| Type II secretion system F domain protein [Conexibacter woesei DSM
14684]
Length = 275
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 77/170 (45%), Gaps = 5/170 (2%)
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
+LG+ LL L V V+ +G GF AP +W+ + R ++ PD LD
Sbjct: 85 VLGLALTLPLGALLPGRLPLVVPFVLPLG--GFVAPDLWLRRRARARGREMEAELPDLLD 142
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
LL + + +G+ +++A+ VA+ G L+ E E+ R+ A R
Sbjct: 143 LLRVALGAGLPLERAVGDVADRATGL---LAREWRTVAVEIGLGMPRERALVALAERCPT 199
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKL 298
V + L ++ R+G +G++L E RS R +++AA PK+
Sbjct: 200 PGVGVLVRTLERAARHGAPLGEALAAQAREARSTRARRLDEQAARAAPKI 249
>gi|304320651|ref|YP_003854294.1| hypothetical protein PB2503_05392 [Parvularcula bermudensis
HTCC2503]
gi|303299553|gb|ADM09152.1| hypothetical protein PB2503_05392 [Parvularcula bermudensis
HTCC2503]
Length = 330
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 63/279 (22%), Positives = 129/279 (46%), Gaps = 33/279 (11%)
Query: 22 VSIFSLIYAVVIPSLGSGELEKRMKSVA-----VEREILRKQQITSLQKDSASSRLRTRD 76
V+I L +A+ + G G KR++S++ +R+ K+Q +K + S + D
Sbjct: 16 VAIVGLAFAL-LGFDGGGATNKRVQSLSGNAKQAKRKTSAKEQTRDRRKTISDSLKKIED 74
Query: 77 SKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIF 136
+ N KK++L ++ AGF ++S+ +V ++ ++GI ++
Sbjct: 75 KQKEANQKKKVSLDKLI---------EQAGF--DFSVRDFWTASAIVAVV--MIGIGYVS 121
Query: 137 GYDKLLEYPFQLRVGAVILIGYVGFCA-PSVWISNLVQKRQSSIKRAWPDALDLLLICVE 195
G + L+ ++ +G VG P ++ +KRQ + + +A+D+++ V+
Sbjct: 122 GQNALV----------ILAMGIVGGLGIPRWFLYQTRRKRQKKFENEFSNAIDVIVRGVK 171
Query: 196 SGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNAT 255
SG+ +++ L+ ++ D QS P+ EE L + + + E YNR + V
Sbjct: 172 SGLPVNECLKIISRD--AQS-PVKEEFQLLVEGQRIGLTLEQSLERLYNRMPISDVNFFA 228
Query: 256 QALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASL 294
L+ + G ++ D+L L + RS + M + A S+
Sbjct: 229 IVLVIQQQTGGNLADALGNLSTVLRSRKTMLGKIAALSM 267
>gi|254483289|ref|ZP_05096521.1| Bacterial type II secretion system protein F domain [marine gamma
proteobacterium HTCC2148]
gi|214036512|gb|EEB77187.1| Bacterial type II secretion system protein F domain [marine gamma
proteobacterium HTCC2148]
Length = 296
Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 75/162 (46%), Gaps = 11/162 (6%)
Query: 154 ILIGYVGFCAPSVWI------SNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRV 207
+L+G G ++WI SN Q R I R P ALDL ++ +E+G ++ + L
Sbjct: 122 LLLGTAGGVLWAMWIKPSMLDSNATQ-RSRLIYRRIPYALDLSVLVLETGGTLREGL--- 177
Query: 208 AEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTS 267
E+I Q+ PL+EE+ +T+ E+ + A R ++ + A+ + + G
Sbjct: 178 -EEISLQNDPLAEELRITLLEMDSGSTQAAALRGMGQRVGLESLETILTAINRGEETGAP 236
Query: 268 IGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPV 309
+ +L R RL E EK A K+T P ++ + V
Sbjct: 237 MVATLITQAEMFRERRLQEIEKMAVEAPTKMTFPNMMIMVSV 278
>gi|296133931|ref|YP_003641178.1| Type II secretion system F domain protein [Thermincola sp. JR]
gi|296032509|gb|ADG83277.1| Type II secretion system F domain protein [Thermincola potens JR]
Length = 294
Score = 53.5 bits (127), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 75/161 (46%), Gaps = 7/161 (4%)
Query: 167 WISNLVQKRQSSIKRA----WPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEM 222
W+ ++K+ KR P ++ L + + +G+ A+ +V D PL +EM
Sbjct: 134 WVDKDLEKKLKMKKRQILIELPGFINTLALLINAGLPFSSAVHKVVHD-SDPDRPLYKEM 192
Query: 223 LLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQS-DRYGTSIGDSLRVLVSETRS 281
+A++ A+E+F R ++ + +IQ+ +R I LR L E
Sbjct: 193 NYVLADIGAGKPIHQAYEDFARRCRIPEITRFVSTIIQNLNRGNGDIVYVLRTLAQEAWE 252
Query: 282 ERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
+R A K+ KL PM++ F+ V I+V + PAI+++
Sbjct: 253 KRKDIARKQGEEASSKLVFPMVMVFIAVAIIV-LAPAIMTM 292
>gi|310640814|ref|YP_003945572.1| type ii secretion system f domain protein [Paenibacillus polymyxa
SC2]
gi|309245764|gb|ADO55331.1| Type II secretion system F domain protein [Paenibacillus polymyxa
SC2]
Length = 292
Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 70/151 (46%), Gaps = 3/151 (1%)
Query: 172 VQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSV-PLSEEMLLTIAELS 230
VQKR I P+ L +++ V +G ++ +AL E G +V PL E+L T+ E
Sbjct: 139 VQKRDQQILMELPELLSKMMLLVGAGETVQRALLHCVERKGADTVHPLYRELLQTVGEWE 198
Query: 231 FLPNRQVAFENFYNRTQMDCVR-NATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEK 289
+ Q AFE+ R + V T L+ R G+ +LR L S+R +
Sbjct: 199 SGYSFQQAFEHLSKRCGIQEVTIFTTTVLLNMRRGGSDFVMALRELSQTLWSKRTSISRT 258
Query: 290 KAASLGPKLTVPMIIFFLPVLILVIIGPAIL 320
+ KL PM + L V++LV PA++
Sbjct: 259 RGEQASSKLVFPMALILLTVIVLV-GAPALM 288
>gi|328545275|ref|YP_004305384.1| Bacterial type II secretion system protein F domain [polymorphum
gilvum SL003B-26A1]
gi|326415017|gb|ADZ72080.1| Bacterial type II secretion system protein F domain [Polymorphum
gilvum SL003B-26A1]
Length = 339
Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 78/318 (24%), Positives = 146/318 (45%), Gaps = 41/318 (12%)
Query: 12 TELAVAITTAVSIFSLIYAVVIPSL-GSGELEKRMKSVAVEREILRKQQITSLQKDSASS 70
T +AVA+ A SI +IYA+ P L GS E+R+ +A R Q + + +
Sbjct: 13 TTIAVALLAAFSIGGVIYALFEPVLSGSKRREQRLGQIAA-----RPQAASDRRPVRDAE 67
Query: 71 RLRTRDSKSLRNFVKKLNLKAILVDE-NIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLI 129
+ R L+ F +K + + + N+L AG ++ ++ +V ++FLI
Sbjct: 68 KRRKSVQDQLKEFEEKQKARQKRANSLTLTNRLEQAGL--DWERKHFIIFSIVSGLVFLI 125
Query: 130 LGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDL 189
LG + L P + A+ +G +GF P +++ +KR + P+A+D+
Sbjct: 126 LGFL-------LTRSP--ILTLAIAFVGGLGF--PRWYLARRRRKRFDAFLNELPNAVDI 174
Query: 190 LLICVESGISIDQALRRVAED----IGGQSVPLSEE--MLLTIAE-LSFLPNR-QVAFEN 241
++ V++G+ + ++ VA + + G+ + E M LT+ E + LP+R +A N
Sbjct: 175 IVRGVKAGLPLGDCIKIVASEARDPVAGEFRKIVEAQVMGLTLTEAVGRLPDRVPLAEAN 234
Query: 242 FYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVP 301
F+ A IQ + G + ++L L R + ++ + +A S K +
Sbjct: 235 FF----------AIVVAIQ-QQAGGGLSEALGNLGKVLRGRKTLKGKIRALSSEAKSSAA 283
Query: 302 MI--IFFLPVLILVIIGP 317
+I + F+ LIL +I P
Sbjct: 284 IIGSLPFIVSLILYLIAP 301
>gi|85711971|ref|ZP_01043025.1| Flp pilus assembly protein TadC [Idiomarina baltica OS145]
gi|85694157|gb|EAQ32101.1| Flp pilus assembly protein TadC [Idiomarina baltica OS145]
Length = 264
Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 75/152 (49%), Gaps = 6/152 (3%)
Query: 173 QKRQSSIKRAWPDALDLLLICVESGISIDQALRRV--AEDIGGQSVPLSEEMLLTIAELS 230
+ +Q+ I R PD DLL + + SG+ + AL RV A +G L+ E+ ++
Sbjct: 112 RSKQARIYRELPDFSDLLAMMLASGLPLIPALDRVSKASSMG----YLANEISYVGQQIR 167
Query: 231 FLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKK 290
+ AF + +++ + + L + + G S+ ++L + R E+L AEKK
Sbjct: 168 RGRDLTSAFTGLADLYRVNALSEWCKLLNRGYQQGNSLTEALLFFSEQLRDEQLNLAEKK 227
Query: 291 AASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
A KL +P++ F PV LVI+GP + +
Sbjct: 228 AQEAPVKLLLPLLSCFFPVNFLVILGPIFIQL 259
>gi|315652230|ref|ZP_07905225.1| conserved hypothetical protein [Eubacterium saburreum DSM 3986]
gi|315485536|gb|EFU75923.1| conserved hypothetical protein [Eubacterium saburreum DSM 3986]
Length = 284
Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 75/149 (50%), Gaps = 4/149 (2%)
Query: 168 ISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIA 227
+++ + R+ + R +P L L + + +G+ I +A +VA G L +EM T
Sbjct: 131 LNDKINARRDELLRDYPGMLSKLTLLINAGMPIREAWIKVANTNEG---ILYQEMKNTAM 187
Query: 228 ELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTS-IGDSLRVLVSETRSERLME 286
EL A++ F R + +R + +IQ+ + G++ + + LR + +E E+ E
Sbjct: 188 ELYNGMQEAEAYKTFGERCSIKSLRKFSTMMIQNLQKGSNEVVEFLRDMSTEAWEEKKHE 247
Query: 287 AEKKAASLGPKLTVPMIIFFLPVLILVII 315
++K KL +P+ + F VLIL+I+
Sbjct: 248 VKRKGEKASNKLLLPIGLIFAGVLILIIV 276
>gi|289675688|ref|ZP_06496578.1| type II secretion system protein [Pseudomonas syringae pv. syringae
FF5]
Length = 252
Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 52/238 (21%), Positives = 108/238 (45%), Gaps = 6/238 (2%)
Query: 86 KLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYP 145
++ ++I +D L G+R ++ ++ VP+ +++ I+ + K ++ P
Sbjct: 14 RIGQRSISLDSETQILLNRIGWRRASKRSLFAACQVGVPVGLMVVAILGQMLFFKGIQQP 73
Query: 146 FQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALR 205
F + + +G G+ P ++ + ++RQ + + LL I ESG++++QALR
Sbjct: 74 F---IAPIFALG-AGYLLPKRILATVARRRQKQVVVEISTFIPLLRILFESGMAVEQALR 129
Query: 206 RVAEDIGGQSVP-LSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRY 264
++ + G +P LSEE+ + + + +D + + L Q
Sbjct: 130 VLSNE-GKDLLPVLSEEIRVVLMRVDSGLELGEELRKTAALLDVDELSDTCVILNQLIHQ 188
Query: 265 GTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
G SL L RL ++ + L K++V M++F P L++V+ GP ++I
Sbjct: 189 GGGALKSLLTLKQLIDDRRLTRLQEYISKLSAKMSVVMMVFLFPALLIVLAGPGFMAI 246
>gi|15599496|ref|NP_252990.1| TadC [Pseudomonas aeruginosa PAO1]
gi|107100116|ref|ZP_01364034.1| hypothetical protein PaerPA_01001137 [Pseudomonas aeruginosa PACS2]
gi|116052334|ref|YP_792645.1| hypothetical protein PA14_55860 [Pseudomonas aeruginosa UCBPP-PA14]
gi|218893392|ref|YP_002442261.1| TadC [Pseudomonas aeruginosa LESB58]
gi|254239030|ref|ZP_04932353.1| hypothetical protein PACG_05207 [Pseudomonas aeruginosa C3719]
gi|254244889|ref|ZP_04938211.1| hypothetical protein PA2G_05762 [Pseudomonas aeruginosa 2192]
gi|9950522|gb|AAG07688.1|AE004846_5 TadC [Pseudomonas aeruginosa PAO1]
gi|115587555|gb|ABJ13570.1| putative pilus assembly protein [Pseudomonas aeruginosa UCBPP-PA14]
gi|126170961|gb|EAZ56472.1| hypothetical protein PACG_05207 [Pseudomonas aeruginosa C3719]
gi|126198267|gb|EAZ62330.1| hypothetical protein PA2G_05762 [Pseudomonas aeruginosa 2192]
gi|218773620|emb|CAW29434.1| TadC [Pseudomonas aeruginosa LESB58]
Length = 303
Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 38/168 (22%), Positives = 77/168 (45%)
Query: 159 VGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPL 218
+GF P + + + R++ I + L+ I ++G++++Q LR V + G + L
Sbjct: 132 IGFLLPKQVLKHFAKARRALIADEMILFVQLIRILFDAGLTVEQTLRVVCLEGRGITPQL 191
Query: 219 SEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSE 278
+ E+ L + + E R Q+D + + L Q R G S +L L
Sbjct: 192 ARELDLALTRADNGIDLAEELEALARRLQVDPLNDCCGVLRQMLRQGGSARSTLLTLKQL 251
Query: 279 TRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
RL +++ L K+++ M++ P L++V+ GP +++I +
Sbjct: 252 FEDRRLTTLQERIGKLSAKMSLVMMVLLFPALLIVLAGPGVIAITKAL 299
>gi|49084732|gb|AAT51226.1| PA4300 [synthetic construct]
Length = 304
Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 38/168 (22%), Positives = 77/168 (45%)
Query: 159 VGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPL 218
+GF P + + + R++ I + L+ I ++G++++Q LR V + G + L
Sbjct: 132 IGFLLPKQVLKHFAKARRALIADEMILFVQLIRILFDAGLTVEQTLRVVCLEGRGITPQL 191
Query: 219 SEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSE 278
+ E+ L + + E R Q+D + + L Q R G S +L L
Sbjct: 192 ARELDLALTRADNGIDLAEELEALARRLQVDPLNDCCGVLRQMLRQGGSARSTLLTLKQL 251
Query: 279 TRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
RL +++ L K+++ M++ P L++V+ GP +++I +
Sbjct: 252 FEDRRLTTLQERIGKLSAKMSLVMMVLLFPALLIVLAGPGVIAITKAL 299
>gi|156975614|ref|YP_001446521.1| hypothetical protein VIBHAR_03347 [Vibrio harveyi ATCC BAA-1116]
gi|156527208|gb|ABU72294.1| hypothetical protein VIBHAR_03347 [Vibrio harveyi ATCC BAA-1116]
Length = 187
Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 33/144 (22%), Positives = 73/144 (50%), Gaps = 1/144 (0%)
Query: 179 IKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVA 238
+ + P LD++ +CV++ ++I+ + +A+++ L ++ T +E + + A
Sbjct: 36 VSKNLPYVLDIMSVCVQTCMTIEASFAYLAQELKIFDKDLCYQINKT-SEAGKVHGIEKA 94
Query: 239 FENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKL 298
+ R + + +IQ+ YG S+ + L L + R +L+E E+K L K+
Sbjct: 95 LHDLSVRLPAPEINSFVLTIIQNLHYGASVANVLSDLAEDMRRIKLLEIEEKMGKLSAKM 154
Query: 299 TVPMIIFFLPVLILVIIGPAILSI 322
+VP+I+ + +++ I+ P L I
Sbjct: 155 SVPLILLIMFPIVIFILAPGFLQI 178
>gi|311111713|ref|YP_003982935.1| type II secretion system protein [Rothia dentocariosa ATCC 17931]
gi|310943207|gb|ADP39501.1| type II secretion system protein [Rothia dentocariosa ATCC 17931]
Length = 310
Score = 52.4 bits (124), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 65/295 (22%), Positives = 121/295 (41%), Gaps = 28/295 (9%)
Query: 34 PSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAIL 93
P+ G + +M+SV++ + R+ Q++ A +S V+ +
Sbjct: 28 PNFGE-RIAPQMRSVSIRESLHRENQVSGTSVLDALYSFLEPMMQSFLGRVRSTESR--- 83
Query: 94 VDENIVNKLRAAG-------FRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPF 146
DE + +LR AG FR+E IL V V +LG++ + G LLE
Sbjct: 84 -DEALAARLRRAGSDQTVSAFRAE---QILWAVSSVA-----LLGVLSVIG---LLENQL 131
Query: 147 QLRVGAVILI--GYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQAL 204
L G +++I G GF A W+ ++ +R+ + +P +++ + V +G S +L
Sbjct: 132 SLWSGLMLIILGGVTGFLARDWWLGQIIVRREKQLIAEFPALAEMMALSVAAGESALASL 191
Query: 205 RRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRY 264
R+ G+ L+ E +A+ + A F TQ+ + + +
Sbjct: 192 ERICRTSRGE---LAREFNDILAQTRAGSSLLAALNEFAQSTQIPALSRFVDGVAVAIER 248
Query: 265 GTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAI 319
GT + D LR + R E + A + P++ LP+ ++ I P +
Sbjct: 249 GTPLADVLRAQAQDVRDNAKRELLEVAGKKEIAMLAPVVFLILPLTVVFAIFPGL 303
>gi|188592036|ref|YP_001796634.1| type II secretion system protein [Cupriavidus taiwanensis LMG
19424]
gi|170938410|emb|CAP63397.1| Type II secretion system protein [Cupriavidus taiwanensis LMG
19424]
Length = 356
Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 48/238 (20%), Positives = 100/238 (42%), Gaps = 17/238 (7%)
Query: 95 DENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVI 154
D+ ++ + G ++ +L RL +P+ L ++W G AV+
Sbjct: 127 DQQLLEQCGWYGLQARVVFGVL---RLGLPMALSALAMLWHLGASGF----------AVV 173
Query: 155 LIGY----VGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAED 210
G+ V + AP ++ +R + P +D+L + G+SIDQ+L+ + +
Sbjct: 174 AWGFGTFAVAYLAPKWYLRRRAAERLRRVDDELPVLIDMLRLLQGVGLSIDQSLQVIVAE 233
Query: 211 IGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGD 270
G L E+ + + +R+ + +++ L Q D++G ++ +
Sbjct: 234 FGSMLRVLGPELARANQQFASGRSREQTLLRIGRLFDSEDLKSLITLLTQVDKHGGAVQE 293
Query: 271 SLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMKD 328
LR + R + + L K+T M++ LPVL+++ GP L +I + +
Sbjct: 294 PLRQFGLRMQEARKSRMKDEIGRLTVKMTAVMVVSLLPVLLILTAGPGFLGVIRMLAN 351
>gi|198284409|ref|YP_002220730.1| type II secretion system protein [Acidithiobacillus ferrooxidans
ATCC 53993]
gi|218665047|ref|YP_002427077.1| tight adherence protein TadC [Acidithiobacillus ferrooxidans ATCC
23270]
gi|198248930|gb|ACH84523.1| type II secretion system protein [Acidithiobacillus ferrooxidans
ATCC 53993]
gi|218517260|gb|ACK77846.1| tight adherence protein TadC [Acidithiobacillus ferrooxidans ATCC
23270]
Length = 312
Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 41/184 (22%), Positives = 82/184 (44%), Gaps = 3/184 (1%)
Query: 140 KLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGIS 199
+L+ F + + AV ++GY+ P + + + R ++ P +D+L + G+S
Sbjct: 125 HMLKLTFWMSLLAVAIVGYL---LPKFILESKAKSRGDAVNAEIPFFVDMLALLQGVGLS 181
Query: 200 IDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALI 259
++Q+L +A+ L+ EM ++ R A + + L
Sbjct: 182 LEQSLASLAQTSEAGIPLLAGEMREMGKHIAIGRPRVEAMQKLAEQLGDPDFEELVNMLR 241
Query: 260 QSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAI 319
Q +R+G + LR + +R M ++ L K+T M + LP L+L+ GPA+
Sbjct: 242 QIERFGGDVAQPLRDFAGRLQEKRQMALRERVGKLNVKMTAVMTLTMLPALLLITAGPAV 301
Query: 320 LSII 323
L+++
Sbjct: 302 LALL 305
>gi|225572862|ref|ZP_03781617.1| hypothetical protein RUMHYD_01053 [Blautia hydrogenotrophica DSM
10507]
gi|225039788|gb|EEG50034.1| hypothetical protein RUMHYD_01053 [Blautia hydrogenotrophica DSM
10507]
Length = 337
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 77/158 (48%), Gaps = 5/158 (3%)
Query: 169 SNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSV---PLSEEMLLT 225
N +KR+ + +P + + +++G+S+ A ++++ED ++ P EE+ T
Sbjct: 178 ENSRKKREEELIMDYPGLVTKFTLLIQAGMSVRGAFQKISEDCETKTKDRRPGYEEVRRT 237
Query: 226 IAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGT-SIGDSLRVLVSETRSERL 284
E+ +++ A++NF R + + L+Q+ R G ++ D L +E ER
Sbjct: 238 CIEMDSGVSQKEAYQNFGQRCAQAKYKTFSTLLVQNLRSGNRNLVDMLERESTEAWEERK 297
Query: 285 MEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
A + KL VPMI+ VL L++I PA LS
Sbjct: 298 RRARIHGETAATKLLVPMILMLGVVLALLMI-PACLSF 334
>gi|222111306|ref|YP_002553570.1| type II secretion system protein [Acidovorax ebreus TPSY]
gi|221730750|gb|ACM33570.1| type II secretion system protein [Acidovorax ebreus TPSY]
Length = 279
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 74/151 (49%), Gaps = 4/151 (2%)
Query: 161 FCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSE 220
F P + L ++R++ + PDAL++L + SG S+ A+ VA + P S+
Sbjct: 86 FVLPRMAYGYLKRRREAKLIEQMPDALNMLAGSLRSGASLAIAMDLVATE---TPPPFSQ 142
Query: 221 EMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETR 280
E+ L + E + + AFE+F R ++ V A+ S G ++ + L L S R
Sbjct: 143 ELSLVLREQKLGVSLEDAFESFAKRVNLEDVNLLVSAITISKDVGGNLSEVLERLASTLR 202
Query: 281 SERLMEAEKKAASLGPKLTVPMIIFFLPVLI 311
++ ME + +A + KL +++ LPV +
Sbjct: 203 AKAAMEGKIRALTSQGKLQ-GIVVGLLPVFL 232
>gi|330873645|gb|EGH07794.1| hypothetical protein PSYMP_04415 [Pseudomonas syringae pv.
morsprunorum str. M302280PT]
gi|330963434|gb|EGH63694.1| hypothetical protein PSYAC_02052 [Pseudomonas syringae pv.
actinidiae str. M302091]
Length = 294
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 54/238 (22%), Positives = 107/238 (44%), Gaps = 6/238 (2%)
Query: 86 KLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYP 145
++ ++I +D L G+R ++ ++ VPI + + I+ + K +E P
Sbjct: 56 RIGQRSISLDSETQVLLNRIGWRRATKRSLFAACQVGVPIALMSMVILAQVLFFKEIEQP 115
Query: 146 FQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALR 205
F + + +G +G+ P ++ Q+RQ + + LL I ESG++++QALR
Sbjct: 116 F---IAPIFALG-IGYLLPKRVLAAAAQRRQKQVVVEISTFIPLLRILFESGMAVEQALR 171
Query: 206 RVAEDIGGQSVP-LSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRY 264
++ + G +P LS+E+ + + + +D + + L Q
Sbjct: 172 VLSNE-GKDLLPVLSDEIRVVLTRVDSGLELGEELRKTAALLAVDELSDTCVILNQLIHQ 230
Query: 265 GTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
G SL L RL ++ + L K++V M++F P L++V+ GP ++I
Sbjct: 231 GGGALKSLLTLKQLIDDRRLTRLQEYISKLSAKMSVVMMVFLFPALLIVLAGPGFIAI 288
>gi|116620535|ref|YP_822691.1| type II secretion system protein [Candidatus Solibacter usitatus
Ellin6076]
gi|116223697|gb|ABJ82406.1| type II secretion system protein [Candidatus Solibacter usitatus
Ellin6076]
Length = 323
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 85/188 (45%), Gaps = 8/188 (4%)
Query: 136 FGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVE 195
FG ++ + F AV+L G AP V + KR ++++ +P++LD L +
Sbjct: 106 FGLGLMMPFLFNAPTTAVVLALLFG-SAPYVVVRQKRSKRLATLEEQFPESLDFLARSMR 164
Query: 196 SGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNAT 255
+G + +L + E++ PL +E E + A NF R + VR T
Sbjct: 165 AGHAFSISLEMLGEELAD---PLGQEFRALFNEQNLGAPLDTALRNFTTRVPLLDVRFFT 221
Query: 256 QALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPV---LIL 312
+++ + G ++ + L L R ++ + KAAS +LT I+ LPV L L
Sbjct: 222 SSVLLQKQTGGNLSEILARLAYVIRERFRLKGQVKAASAHGRLTA-TILTLLPVGTMLAL 280
Query: 313 VIIGPAIL 320
+++ P L
Sbjct: 281 LVVAPGYL 288
>gi|187926431|ref|YP_001892776.1| type II secretion system protein [Ralstonia pickettii 12J]
gi|241665918|ref|YP_002984277.1| type II secretion system protein [Ralstonia pickettii 12D]
gi|187728185|gb|ACD29349.1| type II secretion system protein [Ralstonia pickettii 12J]
gi|240867945|gb|ACS65605.1| type II secretion system protein [Ralstonia pickettii 12D]
Length = 329
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/261 (18%), Positives = 113/261 (43%), Gaps = 15/261 (5%)
Query: 74 TRDSKSLRNFVKKLNLKAI-------LVDENIVNKLRAAGFRSEYSLNILLVVRLVVPII 126
+R+++ L+ + K+ + I +V E L G+ E++ + R+++P +
Sbjct: 72 SREAQQLQQQIAKVGQRWIDTGLGRRIVTEEDRKLLEECGYYGEHARTVFGGTRILLPPL 131
Query: 127 FLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDA 186
+ G + L + F A+ G+ AP + + R+ + P
Sbjct: 132 LAVFGAL--HASSALFVFVFGFVGFAL------GYLAPKWLLGRRKESRRRRMDDELPVM 183
Query: 187 LDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRT 246
+D+L + G+SIDQ+L+ +A + G L+ E + + +R+
Sbjct: 184 VDMLRLLQGVGLSIDQSLQVIANEFHGMLPVLAGEFGRANQQFASGRSREQTLLRIARLF 243
Query: 247 QMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFF 306
+ ++ L Q DR+G ++ + LR + R +++ L ++T+ M++
Sbjct: 244 DNEDLKGLITLLTQVDRFGGAVQEPLRQFGGRLQENRRARLKERVGKLTVQMTMIMVMTL 303
Query: 307 LPVLILVIIGPAILSIIDTMK 327
LP L+++ GP + ++ +++
Sbjct: 304 LPALLIITAGPGFMGVMRSLQ 324
>gi|221066735|ref|ZP_03542840.1| type II secretion system protein [Comamonas testosteroni KF-1]
gi|220711758|gb|EED67126.1| type II secretion system protein [Comamonas testosteroni KF-1]
Length = 338
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/163 (22%), Positives = 79/163 (48%)
Query: 164 PSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEML 223
P +S +R+ + P +DLL + G+SIDQ+L+ ++++ G LS E+
Sbjct: 170 PKWLVSYKSSQRREQVVEELPLFVDLLRLLQGVGLSIDQSLQILSQEFGSVLPVLSSELA 229
Query: 224 LTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSER 283
+ + +R + + + + + L+Q DR+G ++ L+ R +R
Sbjct: 230 MANQLYASGRSRDQSLQRLTHLSDDQDMTAVVNLLVQVDRHGGAVQGPLQDFGIRLREKR 289
Query: 284 LMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
++K ++ K+T M++ LP L+++ GP +++I ++
Sbjct: 290 QARFKEKIGAITVKMTGVMVLTLLPALMVITAGPGFMAVIRSL 332
>gi|28871970|ref|NP_794589.1| hypothetical protein PSPTO_4855 [Pseudomonas syringae pv. tomato
str. DC3000]
gi|213968012|ref|ZP_03396158.1| membrane protein [Pseudomonas syringae pv. tomato T1]
gi|301383672|ref|ZP_07232090.1| hypothetical protein PsyrptM_13608 [Pseudomonas syringae pv. tomato
Max13]
gi|302059959|ref|ZP_07251500.1| hypothetical protein PsyrptK_08205 [Pseudomonas syringae pv. tomato
K40]
gi|302131625|ref|ZP_07257615.1| hypothetical protein PsyrptN_09542 [Pseudomonas syringae pv. tomato
NCPPB 1108]
gi|28855223|gb|AAO58284.1| membrane protein, putative [Pseudomonas syringae pv. tomato str.
DC3000]
gi|213927355|gb|EEB60904.1| membrane protein [Pseudomonas syringae pv. tomato T1]
gi|331014704|gb|EGH94760.1| hypothetical protein PLA106_02330 [Pseudomonas syringae pv.
lachrymans str. M302278PT]
Length = 294
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 54/238 (22%), Positives = 107/238 (44%), Gaps = 6/238 (2%)
Query: 86 KLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYP 145
++ ++I +D L G+R ++ ++ VPI + + I+ + K +E P
Sbjct: 56 RIGQRSISLDSETQVLLNRIGWRRATKRSLFAACQVGVPIALMSMVILAQVLFFKDIEQP 115
Query: 146 FQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALR 205
F + + +G +G+ P ++ Q+RQ + + LL I ESG++++QALR
Sbjct: 116 F---IAPIFALG-IGYLLPKRVLAAAAQRRQKKVVVEISTFIPLLRILFESGMAVEQALR 171
Query: 206 RVAEDIGGQSVP-LSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRY 264
++ + G +P LS+E+ + + + +D + + L Q
Sbjct: 172 VLSNE-GKDLLPVLSDEIRVVLTRVDSGLELGEELRKTAALLAVDELSDTCVILNQLIHQ 230
Query: 265 GTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
G SL L RL ++ + L K++V M++F P L++V+ GP ++I
Sbjct: 231 GGGALKSLLTLKQLIDDRRLTRLQEYISKLSAKMSVVMMVFLFPALLIVLAGPGFIAI 288
>gi|227875850|ref|ZP_03993976.1| conserved hypothetical protein [Mobiluncus mulieris ATCC 35243]
gi|269977485|ref|ZP_06184457.1| type II secretion system protein [Mobiluncus mulieris 28-1]
gi|306819131|ref|ZP_07452845.1| conserved hypothetical protein [Mobiluncus mulieris ATCC 35239]
gi|307700029|ref|ZP_07637078.1| type II secretion system F domain protein [Mobiluncus mulieris
FB024-16]
gi|227843598|gb|EEJ53781.1| conserved hypothetical protein [Mobiluncus mulieris ATCC 35243]
gi|269934401|gb|EEZ90963.1| type II secretion system protein [Mobiluncus mulieris 28-1]
gi|304648107|gb|EFM45418.1| conserved hypothetical protein [Mobiluncus mulieris ATCC 35239]
gi|307614790|gb|EFN94010.1| type II secretion system F domain protein [Mobiluncus mulieris
FB024-16]
Length = 297
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/175 (22%), Positives = 87/175 (49%), Gaps = 11/175 (6%)
Query: 152 AVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDI 211
A+++ +G P +S ++RQ + + PDA++LL + V +G S+ AL RVA
Sbjct: 124 AILVFPLMGVVYPDYRLSAGAKQRQMQLNQELPDAIELLALAVGAGESLYMALERVASRC 183
Query: 212 GGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDS 271
+ EE+ +AEL ++ ++ RT+ + + + A++ + G+ +
Sbjct: 184 TQVT---GEELTRLMAELKQGEALSMSLTSWRTRTESEVLSHLVDAVVSALERGSPLAQV 240
Query: 272 LRVLVSETRS----ERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
LR V+++RS + L + KK + +P++ LP+ ++ + P ++++
Sbjct: 241 LREQVADSRSAARNQLLAQGGKKEV----WMMIPVVFLILPLTVVFALYPGLVAL 291
>gi|84498180|ref|ZP_00996977.1| putative membrane protein [Janibacter sp. HTCC2649]
gi|84381680|gb|EAP97563.1| putative membrane protein [Janibacter sp. HTCC2649]
Length = 654
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 54/189 (28%), Positives = 87/189 (46%), Gaps = 12/189 (6%)
Query: 141 LLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISI 200
+L P+ V I +GY F P+ + L +R ++ PD L L+ + SG S+
Sbjct: 444 VLAMPWWFTVPIGIALGY--FL-PAAVLRMLAGRRAKKFEQMLPDILMLVATTLASGFSL 500
Query: 201 DQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQAL-I 259
QAL VA D + P +E T+AE + A EN R + +R T A+ I
Sbjct: 501 TQALDAVARD---SAQPAGKEFSRTLAETRIGADVSDALENMSVRMDSEAMRWTTMAIRI 557
Query: 260 QSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIG--- 316
Q D G ++ D+LR R ++ + + S +L+ I+ LP+L+ V +
Sbjct: 558 QRD-VGGNLADTLRTTAHTLRERESLKRQVNSLSAEGRLSA-YILLGLPILLFVYMAWSN 615
Query: 317 PAILSIIDT 325
PA S++ T
Sbjct: 616 PAYTSLLWT 624
>gi|300741822|ref|ZP_07071843.1| putative type II secretion system protein F domain protein [Rothia
dentocariosa M567]
gi|300381007|gb|EFJ77569.1| putative type II secretion system protein F domain protein [Rothia
dentocariosa M567]
Length = 310
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 55/234 (23%), Positives = 98/234 (41%), Gaps = 23/234 (9%)
Query: 95 DENIVNKLRAAG-------FRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQ 147
DE + +LR AG FR+E IL V V +LG++ + G LLE
Sbjct: 84 DEALAARLRRAGSDQTVSAFRAE---QILWAVSSVA-----LLGVLSVIG---LLENQLS 132
Query: 148 LRVGAVILI--GYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALR 205
L G +++I G GF A W+ ++ +R+ + +P +++ + V +G S +L
Sbjct: 133 LWSGLMLIILGGVTGFLARDWWLGQIIVRREKQLIAEFPALAEMMALSVAAGESALASLE 192
Query: 206 RVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYG 265
R+ G+ L+ E +A+ + A F TQ+ + + + G
Sbjct: 193 RICRTSRGE---LAREFNDILAQTRAGSSLLAALNEFAQSTQIPALSRFVDGVAVAIERG 249
Query: 266 TSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAI 319
T + D LR + R E + A + P++ LP+ ++ I P +
Sbjct: 250 TPLADVLRAQAQDVRDNAKRELLEVAGKKEIAMLAPVVFLILPLTVVFAIFPGL 303
>gi|296390999|ref|ZP_06880474.1| TadC [Pseudomonas aeruginosa PAb1]
gi|313106819|ref|ZP_07793031.1| putative pilus assembly protein [Pseudomonas aeruginosa 39016]
gi|310879533|gb|EFQ38127.1| putative pilus assembly protein [Pseudomonas aeruginosa 39016]
Length = 303
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/168 (22%), Positives = 77/168 (45%)
Query: 159 VGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPL 218
+GF P + + + R++ I + L+ I ++G++++Q LR V + G + L
Sbjct: 132 IGFLLPKQVLKHFAKARRALIADEMILFVQLIRILFDAGLTVEQTLRVVCLEGRGITPQL 191
Query: 219 SEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSE 278
+ E+ L + + + R Q+D + + L Q R G S +L L
Sbjct: 192 ARELDLALTRADNGIDLAEELDALARRLQVDPLNDCCGVLRQMLRQGGSARSTLLTLKQL 251
Query: 279 TRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
RL +++ L K+++ M++ P L++V+ GP +++I +
Sbjct: 252 FEDRRLTTLQERIGKLSAKMSLVMMVLLFPALLIVLAGPGVIAITKAL 299
>gi|254426916|ref|ZP_05040623.1| Bacterial type II secretion system protein F domain [Alcanivorax
sp. DG881]
gi|196193085|gb|EDX88044.1| Bacterial type II secretion system protein F domain [Alcanivorax
sp. DG881]
Length = 291
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 54/235 (22%), Positives = 105/235 (44%), Gaps = 21/235 (8%)
Query: 96 ENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVIL 155
E+I L+ G E S I L+ ++P++ +G ++ FG +G +L
Sbjct: 72 EDIRLALKGMGKTREQSQVIYLLSCWLLPVLVAAIGFLF-FGA-----------LGG-LL 118
Query: 156 IGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQS 215
+ GF P I + + + + + + +E+G+S+++ LR IG Q
Sbjct: 119 MSAAGFILPRRTIRGMGAQAEMRQNLEAVELCHMTRMLMEAGLSLERVLR----IIGVQG 174
Query: 216 VPLSEEMLLTIAELSFL----PNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDS 271
PL ++ I + L R A + ++ +R+ + QS + G + S
Sbjct: 175 RPLLPILIARIDRFNRLMKSGAERTQALDELGENKRIPVLRSYVVLMKQSSQLGAGVSHS 234
Query: 272 LRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
L ++ E ++ ++ +G K+TV M+ F LP L ++I GPA++SI + +
Sbjct: 235 LDQIIDEAQNVERNRIREETNRIGAKMTVIMMAFMLPALFILIGGPAVVSIAEAL 289
>gi|160893699|ref|ZP_02074483.1| hypothetical protein CLOL250_01253 [Clostridium sp. L2-50]
gi|156864684|gb|EDO58115.1| hypothetical protein CLOL250_01253 [Clostridium sp. L2-50]
Length = 434
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 84/170 (49%), Gaps = 10/170 (5%)
Query: 156 IGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQS 215
IG + C + QKR + +A+P +DLL + + +G+++ AL ++ S
Sbjct: 270 IGVLLVCKGYSDLHKAGQKRNQELMQAYPSFVDLLSLYMGAGLTVKGALLKIV--TMTDS 327
Query: 216 VPLSEEMLLTIAEL-SFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRV 274
LSEE+ T+ E+ S +P + + NR ++ L Q+ R GT D L +
Sbjct: 328 RILSEEINYTLNEIRSGIPETE-GYYRLGNRLELPVYLKMMTLLSQNIRKGTR--DILNM 384
Query: 275 LVSETRSERLME---AEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILS 321
L E S ++ A+KK G +L PMI+ L V+++++I PA++
Sbjct: 385 LAEEELSALQLKRELAKKKGEEAGTRLLFPMIL-QLGVVMIIVIAPALMG 433
>gi|260768630|ref|ZP_05877564.1| type II secretion system protein [Vibrio furnissii CIP 102972]
gi|260616660|gb|EEX41845.1| type II secretion system protein [Vibrio furnissii CIP 102972]
Length = 296
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/232 (21%), Positives = 101/232 (43%), Gaps = 14/232 (6%)
Query: 97 NIVNKLRAAGFRS-EYSLNILLVVRLVVPIIFLIL-GIIWIFGYD---KLLEYPFQLRVG 151
+V +R AG+ S + L + LV +FLIL G ++F L Y + +G
Sbjct: 69 QVVLNMRQAGYISGRQQILCLFKMFLVWSGLFLILTGQQYLFSSSIERTFLYYALFMAIG 128
Query: 152 AVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDI 211
A++ I WI +R I A+ ++ I + G+S+++ L+ ++
Sbjct: 129 ALVSI---------RWIRMQANRRAKIIDEEMLTAVHMMAILWQVGLSLERLLKTYHQEA 179
Query: 212 GGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDS 271
+ +++++ L IA + NR+ F + T ++ L Q G + S
Sbjct: 180 SDLTPEMNKDIALIIARIDAGQNREWVFRDMATLTLSTGFQDLLSMLSQGSETGGGLKKS 239
Query: 272 LRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSII 323
+ L + + ++K + K++V M+ P L +++ GPA L+++
Sbjct: 240 FQSLADLLYERKRVALQEKVTKMSGKISVTMMALMFPALFIILGGPAALALM 291
>gi|325111218|ref|YP_004272286.1| type II secretion system F domain protein [Planctomyces
brasiliensis DSM 5305]
gi|324971486|gb|ADY62264.1| Type II secretion system F domain protein [Planctomyces
brasiliensis DSM 5305]
Length = 286
Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 71/164 (43%), Gaps = 9/164 (5%)
Query: 155 LIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQ 214
L +VGF P + + +RQ I R P +D L +G S+DQ L VA D
Sbjct: 85 LAAFVGFVIPLGILMTMRSRRQGQILRQLPPMIDELARAARTGRSLDQCLEMVATDT--- 141
Query: 215 SVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRV 274
PL +EM ++ +L A RT ++ +R AL + G GD +RV
Sbjct: 142 PAPLGDEMERSVRKLQMGVTMNEALYELPERTGVNGLRILATALSVHQQTG---GDLVRV 198
Query: 275 LVSETRSER---LMEAEKKAASLGPKLTVPMIIFFLPVLILVII 315
L R+ R + +A + G + T ++I P +++ I
Sbjct: 199 LERLARTLRDRGMFLGRLRAITAGSRATALLMILLPPAILVFFI 242
>gi|307293453|ref|ZP_07573299.1| Type II secretion system F domain protein [Sphingobium
chlorophenolicum L-1]
gi|306881519|gb|EFN12735.1| Type II secretion system F domain protein [Sphingobium
chlorophenolicum L-1]
Length = 332
Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 73/311 (23%), Positives = 127/311 (40%), Gaps = 46/311 (14%)
Query: 14 LAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLR 73
+AV +TT + + ++ +A P + KR R + I DSA + L
Sbjct: 8 MAVLLTTMLGLIAMAFAGPSPD----KARKR-----------RMELIRGRHSDSADAILE 52
Query: 74 TRDSKSLRNFVKKLNLKAILVD-----ENIVNKLRAAGFR---SEYSLNILLVVRLVVPI 125
R K++ N +LV EN+ ++R G + S+Y + +
Sbjct: 53 ARMRKAISNRPTGAE-STMLVSLVPNPENLAKRIRMTGKKWTVSQYMTS--------CAV 103
Query: 126 IFLIL-GIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWP 184
IFL+L ++ + G+ L AV+L G P +W+S L+ KR +P
Sbjct: 104 IFLVLCALLMLRGFAPLF---------AVMLGLAAGLGLPHMWVSRLINKRVQQFTAKFP 154
Query: 185 DALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYN 244
DAL+LL + SG+ I + L V+ ++ G P+ EE L + A + +
Sbjct: 155 DALELLTRGLRSGLPIAETLGVVSSEVPG---PVGEEFKLITERIKIGKTMDQALQETAD 211
Query: 245 RTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMII 304
R + +L G ++ ++L L + R M+ + +A S K + II
Sbjct: 212 RLGTAEFQFFVISLAIQRETGGNLAETLSNLATVLRQRSQMKLKIRAMSSESKASA-YII 270
Query: 305 FFLPVLILVII 315
LP + +I
Sbjct: 271 GVLPFTVFGLI 281
>gi|220913151|ref|YP_002488460.1| type II secretion system protein [Arthrobacter chlorophenolicus A6]
gi|219860029|gb|ACL40371.1| type II secretion system protein [Arthrobacter chlorophenolicus A6]
Length = 312
Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 76/174 (43%), Gaps = 9/174 (5%)
Query: 152 AVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDI 211
A+I G GF W+ V++R+ + +P +L+ + V +G S AL RV
Sbjct: 141 AIIGSGISGFIVRDYWLGVQVRRREERMMAEFPSLAELMALAVGAGESATGALDRVCRSA 200
Query: 212 GGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDS 271
G+ LS+E +AE A + F RT + + ++ + GT + D
Sbjct: 201 RGE---LSKEFSTILAETRAGKPLVNALQEFSARTDLAPLVRFVDGIVVAVERGTPLADV 257
Query: 272 LRVL---VSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
LR V +T LMEA K + VP++ LP+ ++ + P I +I
Sbjct: 258 LRAQAQDVRDTAKRDLMEAAGKKEI---AMMVPLVFGVLPLTVVFAVFPGISAI 308
>gi|254505024|ref|ZP_05117175.1| Bacterial type II secretion system protein F domain [Labrenzia
alexandrii DFL-11]
gi|222441095|gb|EEE47774.1| Bacterial type II secretion system protein F domain [Labrenzia
alexandrii DFL-11]
Length = 339
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 82/328 (25%), Positives = 153/328 (46%), Gaps = 45/328 (13%)
Query: 12 TELAVAITTAVSIFSLIYAVVIPSL-GSGELEKRMKSVAV--EREILRK-QQITSLQKDS 67
T AVAI S+ +IY + +PSL G+ + + RM +V+ + E RK + T+ +K S
Sbjct: 13 TGAAVAILVMFSVGGIIYGLFLPSLSGTKKRDARMSAVSARPQSETQRKTMRDTNRRKKS 72
Query: 68 ASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIF 127
+L+ + + K+ N+ + K+ AG E+ + L++ +V I+F
Sbjct: 73 IQDQLKDFEERQKAKHEKQKNVP-------LKVKIEQAGL--EWEMRHLVLFSVVSAILF 123
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
++ +I LL A +G +GF P +I N ++R ++ P+ +
Sbjct: 124 FVISLI---ASGNLLI------AAAFTFVGGIGF--PRWYIGNKRKRRFNAFLNELPNGI 172
Query: 188 DLLLICVESGISIDQALRRVA----EDIGGQSVPLSEE--MLLTIAE-LSFLPNRQVAFE 240
D+++ V++G+ + ++ VA E + + ++E M +++AE LS +P+R E
Sbjct: 173 DIIVRGVKAGLPLSDCVKVVAREAREPVATEFRKVTETQVMGVSLAEALSKMPDRVPLPE 232
Query: 241 NFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV 300
+ + + A L + ++G+ RVL R + M+A+ KA S K +
Sbjct: 233 TNFLAIVVSIQQKAGGGLAE------ALGNLSRVL----RQRKAMKAKIKALSSEAKSSA 282
Query: 301 PMIIFFLPVL---ILVIIGPAILSIIDT 325
II LP + IL I P + I+ T
Sbjct: 283 A-IIGALPFVVGGILFFIAPDYMMILFT 309
>gi|309778765|ref|ZP_07673538.1| type II secretion system protein [Ralstonia sp. 5_7_47FAA]
gi|308922473|gb|EFP68097.1| type II secretion system protein [Ralstonia sp. 5_7_47FAA]
Length = 329
Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 54/269 (20%), Positives = 114/269 (42%), Gaps = 31/269 (11%)
Query: 74 TRDSKSLRNFVKKLNLKAI-------LVDENIVNKLRAAGFRSEYSLNILLVVRLVVPII 126
+R+++ L+ + K+ + I +V E L G+ E++ + R+++P +
Sbjct: 72 SREAQQLQQQIAKVGQRWIDTGLGRRIVTEEDRKLLEECGYYGEHARTVFGGTRILLPPL 131
Query: 127 FLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDA 186
+ G + +L VG + G+ AP + + R+ + P
Sbjct: 132 LAVFGALHA---SSVLFVFVFGFVGFAL-----GYLAPKWLLGRRKESRRRRMDDELPVM 183
Query: 187 LDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRT 246
+D+L + G+SIDQ+L+ +A + G ML +A N+Q A +T
Sbjct: 184 VDMLRLLQGVGLSIDQSLQVIANEFHG--------MLPVLAGEFGRANQQFASGRPREQT 235
Query: 247 QMDCVR--------NATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKL 298
+ R L Q DR+G ++ + LR + R +++ L ++
Sbjct: 236 LLRIARLFDNEDLKGLITLLTQVDRFGGAVQEPLRQFGGRLQENRRARLKERVGKLTVQM 295
Query: 299 TVPMIIFFLPVLILVIIGPAILSIIDTMK 327
T+ M++ LP L+++ GP + ++ +++
Sbjct: 296 TMIMVMTLLPALLIITAGPGFMGVMRSLQ 324
>gi|325958171|ref|YP_004289637.1| type ii secretion system F domain-containing protein
[Methanobacterium sp. AL-21]
gi|325329603|gb|ADZ08665.1| Type II secretion system F domain protein [Methanobacterium sp.
AL-21]
Length = 310
Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 83/171 (48%), Gaps = 13/171 (7%)
Query: 126 IFLILGIIWIFGYDKLLEYPFQLRVGAVILIGY-VGFCAPSV----WISNLVQKRQSSIK 180
+ LI GII FG LL + +G ++G+ VGF PS W+ +++R +I+
Sbjct: 46 LMLIAGII--FGLIGLLSFSL---IGITPILGFLVGFLTPSFIVLGWLFFSMERRVDAIE 100
Query: 181 RAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFE 240
+ PD L + + +G+ I+ AL +++ GG PL+ E+ + E+ + A
Sbjct: 101 QTTPDFLRQISSLLRAGVGIETALEDISKQGGG---PLNAELKRAVIEIKIGSSFDEALL 157
Query: 241 NFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKA 291
+ R + + + +++ R G S+ D + + + R+ ++ E++A
Sbjct: 158 SMGERLKSKTLDRTFRMILEGKRVGGSLSDVIETVAEDLRAVLALKRERRA 208
>gi|283778971|ref|YP_003369726.1| type II secretion system protein [Pirellula staleyi DSM 6068]
gi|283437424|gb|ADB15866.1| type II secretion system protein [Pirellula staleyi DSM 6068]
Length = 309
Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 79/170 (46%), Gaps = 13/170 (7%)
Query: 153 VILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIG 212
+IL+G P++ ++ QKR I++ P L+LL E+G+ D A++R+
Sbjct: 128 IILLGLSAL--PALVVNRSRQKRVEMIEQDLPLTLELLATLSEAGLGFDAAMQRI----- 180
Query: 213 GQSV-----PLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTS 267
QS PL+ E A+L R + +R Q+ + AL+Q+++ G
Sbjct: 181 -QSTRLAVRPLASEFRSYQADLLAGRPRTQSLRRLSSRIQVPAISIFVSALVQAEQLGMG 239
Query: 268 IGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGP 317
I LR + R R A A SL K +P+++ FLP L + +GP
Sbjct: 240 IAQVLRRQADDMRDRRRERANAFAMSLTVKRVIPLVVCFLPGLFVWTLGP 289
>gi|167760287|ref|ZP_02432414.1| hypothetical protein CLOSCI_02660 [Clostridium scindens ATCC 35704]
gi|167662170|gb|EDS06300.1| hypothetical protein CLOSCI_02660 [Clostridium scindens ATCC 35704]
Length = 382
Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 49/191 (25%), Positives = 87/191 (45%), Gaps = 7/191 (3%)
Query: 138 YDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESG 197
Y K ++Y + + ILI + + I ++++ + +P+ ++ L + + +G
Sbjct: 191 YYKKMDYRGLVLIVMAILIAILLYALKQQNIRKEGEEKKRQMMLDYPEIVNKLALFLGAG 250
Query: 198 ISIDQALRRVAED-----IGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVR 252
+++ +A R+V ED G + EEM E+ ++ENF R +
Sbjct: 251 MTVKRAWRKVVEDYERHKTDGNARHAYEEMKKACYEMESGVMETESYENFGRRCNVQSYI 310
Query: 253 NATQALIQSDRYGT-SIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLI 311
L Q+ R GT + LR+ + ER A++ G KL +PM + VLI
Sbjct: 311 RLGALLSQNLRKGTKGLTHLLRLESIQAFEERKARAKRLGEEAGTKLLLPMFLMLAIVLI 370
Query: 312 LVIIGPAILSI 322
+VI+ PA LSI
Sbjct: 371 IVIV-PAFLSI 380
>gi|237798377|ref|ZP_04586838.1| type II secretion system protein [Pseudomonas syringae pv. oryzae
str. 1_6]
gi|331021229|gb|EGI01286.1| type II secretion system protein [Pseudomonas syringae pv. oryzae
str. 1_6]
Length = 295
Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 55/238 (23%), Positives = 105/238 (44%), Gaps = 6/238 (2%)
Query: 86 KLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYP 145
++ ++I +D L G+R ++ ++ VPI + + + + K +E P
Sbjct: 56 RIGQRSISLDSETQVLLNRIGWRRARKRSLFAACQIGVPIGLMCVVALGQLLFFKNIEQP 115
Query: 146 FQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALR 205
+ V +G G+ P ++ + ++RQ I + LL I ESG++++QALR
Sbjct: 116 L---IAPVFALG-AGYLLPKRALAAVAKRRQKQIVVEISTFIPLLRILFESGMAVEQALR 171
Query: 206 RVAEDIGGQSVP-LSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRY 264
V + G +P LSEE+ + +A + +D + + L Q
Sbjct: 172 -VLSNEGKDLLPVLSEEIRVVLARVDSGLELGEELRKMAALLDVDELSDTCIILNQLIHQ 230
Query: 265 GTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
G SL L RL ++ + L K+++ M++F P L++V+ GP ++I
Sbjct: 231 GGGALKSLLTLKQLIDDRRLTRLQEYISKLSAKMSMVMMVFLFPALLIVLAGPGFIAI 288
>gi|71733529|ref|YP_276554.1| type II secretion system protein F domain [Pseudomonas syringae pv.
phaseolicola 1448A]
gi|257483343|ref|ZP_05637384.1| type II secretion system protein F domain [Pseudomonas syringae pv.
tabaci ATCC 11528]
gi|298488955|ref|ZP_07006978.1| Type II/IV secretion system protein TadC, associated with Flp pilus
assembly [Pseudomonas savastanoi pv. savastanoi NCPPB
3335]
gi|71554082|gb|AAZ33293.1| type II secretion system protein F domain protein [Pseudomonas
syringae pv. phaseolicola 1448A]
gi|298156453|gb|EFH97550.1| Type II/IV secretion system protein TadC, associated with Flp pilus
assembly [Pseudomonas savastanoi pv. savastanoi NCPPB
3335]
gi|320322734|gb|EFW78827.1| type II secretion system protein F domain [Pseudomonas syringae pv.
glycinea str. B076]
gi|320330481|gb|EFW86460.1| type II secretion system protein F domain [Pseudomonas syringae pv.
glycinea str. race 4]
gi|330887979|gb|EGH20640.1| type II secretion system, protein F domain [Pseudomonas syringae
pv. mori str. 301020]
gi|330989172|gb|EGH87275.1| type II secretion system protein F domain [Pseudomonas syringae pv.
lachrymans str. M301315]
gi|331012562|gb|EGH92618.1| type II secretion system protein, F domain [Pseudomonas syringae
pv. tabaci ATCC 11528]
Length = 294
Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 54/238 (22%), Positives = 107/238 (44%), Gaps = 6/238 (2%)
Query: 86 KLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYP 145
++ ++I +D L G+R ++ ++ VP+ +++ I+ K +E P
Sbjct: 56 RIGQRSISLDSETQMLLNRIGWRRASKRSLFAACQVGVPVGLMVVVIVAQLLLFKGVEQP 115
Query: 146 FQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALR 205
+ V +G +G+ P ++ + Q+RQ + + LL I ESG++++QALR
Sbjct: 116 L---IAPVFALG-IGYLLPKRILAAVAQRRQKQVVVEISTFIPLLRILFESGMAVEQALR 171
Query: 206 RVAEDIGGQSVP-LSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRY 264
++ + G +P LSEE+ + + + +D + + L Q
Sbjct: 172 VLSLE-GKDLLPVLSEEIRVVLVRVDSGLELGEELRKTAALLAVDELSDTCVILNQLIHQ 230
Query: 265 GTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
G SL L RL ++ + L K++V M++F P L++V+ GP ++I
Sbjct: 231 GGGALKSLLTLKQLIDDRRLTRLQEYISKLSAKMSVVMMVFLFPALLIVLAGPGFIAI 288
>gi|295395216|ref|ZP_06805424.1| type II secretion system protein [Brevibacterium mcbrellneri ATCC
49030]
gi|294971978|gb|EFG47845.1| type II secretion system protein [Brevibacterium mcbrellneri ATCC
49030]
Length = 312
Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 81/171 (47%), Gaps = 10/171 (5%)
Query: 153 VILIGYVGFCAPSVWI-SNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDI 211
+I++G VG + W+ + V+KR+ I +P +LL + + +G AL RV
Sbjct: 141 LIVLGGVGGHFLNDWLLTQAVKKREERILAEFPTIAELLALSITAGEGTVDALNRVCHTA 200
Query: 212 GGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDS 271
G+ LS+E+ + +A+ + A + RT + + L + GT + +
Sbjct: 201 TGE---LSDELRIALAQARTGTSLVDALDAMARRTNIQSLIQFVDGLAIALSRGTPLSEV 257
Query: 272 LRVLVSETRSE---RLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAI 319
LR ++ R E +LME K + VP+++F LP+ +L + P++
Sbjct: 258 LRAQAADVREEGRRKLMELSGKKEV---GMLVPVVLFVLPITVLFAVYPSL 305
>gi|168069635|ref|XP_001786522.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162661100|gb|EDQ48667.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 200
Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 77/167 (46%), Gaps = 5/167 (2%)
Query: 152 AVILIGYVGFCAPSVWISNL---VQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVA 208
+I+ G + F P+ I +L V KR I + L+ +++ V +G ++ +A+ R A
Sbjct: 24 GLIIGGLLAFLLPAATIKDLHTKVDKRDQDITIELAELLNKIVLLVGAGETVQKAITRCA 83
Query: 209 EDIGGQ-SVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQA-LIQSDRYGT 266
Q PL +E++ I +L + Q +FENF R + V T A L+ R G+
Sbjct: 84 RQKEAQRDHPLYKELIRMIDDLEGGYSFQQSFENFSKRCAVQEVSAFTTAVLLNLRRGGS 143
Query: 267 SIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILV 313
+L L +R + KL PM++ F+ V++LV
Sbjct: 144 DFAMALNDLSRGLWEKRKAITRTRGEQASSKLVFPMMVIFMIVIVLV 190
>gi|292655192|ref|YP_003535089.1| type IV pilus biogenesis complex membrane subunit [Haloferax
volcanii DS2]
gi|291371902|gb|ADE04129.1| type IV pilus biogenesis complex membrane subunit [Haloferax
volcanii DS2]
Length = 707
Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 48/214 (22%), Positives = 97/214 (45%), Gaps = 23/214 (10%)
Query: 115 ILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQK 174
+ + +R +P ILG+ D + E+ + +G+++++ L ++
Sbjct: 437 VWVALRATIPADPTILGVA-----DAVDEHVVEAAIGSLVVVSA---------FHELRKR 482
Query: 175 RQSSIKRAWPDALDLLLICVESGISIDQALRRV-AEDIGGQSVPLSEEMLLTIAELSFLP 233
R +I+R+ PD LD L E+G+++ Q+LRRV A D+G PL +E+ + ++ +
Sbjct: 483 RIRAIERSMPDFLDRLASVNEAGLTVVQSLRRVSASDLG----PLGDEVERAVRDIDWGA 538
Query: 234 NRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAAS 293
+ Q A RT V + + + + LR+ +E + R + E+
Sbjct: 539 DAQTALRRMDRRTASPMVSRSVTLITNAMSASGDLAPVLRIAANEAQDSRRLARERNQ-- 596
Query: 294 LGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
LT ++I+ ++ L II +S I ++
Sbjct: 597 --EMLTYLLVIYISFLVFLGIIAALTVSFIPAVE 628
>gi|218516697|ref|ZP_03513537.1| pilus component protein [Rhizobium etli 8C-3]
Length = 108
Score = 49.7 bits (117), Expect = 6e-04, Method: Composition-based stats.
Identities = 21/68 (30%), Positives = 43/68 (63%), Gaps = 2/68 (2%)
Query: 14 LAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSR-- 71
+ +A+ A+++F+ Y + IP G+L KRMK+V+ ERE +R ++ + D + +
Sbjct: 14 MLIAVFVAIAVFATFYTIAIPFFERGDLTKRMKAVSTEREQIRARERARMNADPGAGKAS 73
Query: 72 LRTRDSKS 79
LR+++++S
Sbjct: 74 LRSQNNRS 81
>gi|255327037|ref|ZP_05368113.1| type II secretion system protein [Rothia mucilaginosa ATCC 25296]
gi|255296254|gb|EET75595.1| type II secretion system protein [Rothia mucilaginosa ATCC 25296]
Length = 310
Score = 49.7 bits (117), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 39/168 (23%), Positives = 73/168 (43%), Gaps = 5/168 (2%)
Query: 153 VILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIG 212
V++ G GF A W+ V KR+ + +P +++ + V +G S AL R+
Sbjct: 140 VLVSGLSGFLARDWWLGEAVTKREKQLVAEFPALAEMMALSVTAGESALAALERICLTSR 199
Query: 213 GQ-SVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDS 271
G+ + SE + T +S L A + F RT++ + + + + GT + D
Sbjct: 200 GELAREFSEILAQTRTGVSLLS----ALQEFAERTRVPALSRFVEGIAVAIERGTPLADV 255
Query: 272 LRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAI 319
LR + R E + A + P++ F LP+ ++ + P +
Sbjct: 256 LRAQAQDVRDNAKRELMETAGKKEIAMLAPVVFFILPLTVIFAVFPGL 303
>gi|282863647|ref|ZP_06272705.1| type II secretion system protein [Streptomyces sp. ACTE]
gi|282561348|gb|EFB66892.1| type II secretion system protein [Streptomyces sp. ACTE]
Length = 272
Score = 49.3 bits (116), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 61/143 (42%), Gaps = 6/143 (4%)
Query: 184 PDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFY 243
P DLL C+ +G A V E +GG P+ + ++ T AE+ A+ F
Sbjct: 132 PLVADLLAACLSAGAGPRDAAEAVGESLGG---PVGDRLVRTAAEIRLGGEPSEAWGRF- 187
Query: 244 NRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMI 303
++ + L ++ G D + + E R+ER A +A G +T P+
Sbjct: 188 --GEIPGAARLARCLERAGATGAPAADPVSRVADEMRAERASAAVARAQRAGVLITAPVG 245
Query: 304 IFFLPVLILVIIGPAILSIIDTM 326
+ FLP + V + P ++ + +
Sbjct: 246 LCFLPAFLAVGVAPVVIGLATGL 268
>gi|94497257|ref|ZP_01303829.1| hypothetical protein SKA58_13683 [Sphingomonas sp. SKA58]
gi|94423362|gb|EAT08391.1| hypothetical protein SKA58_13683 [Sphingomonas sp. SKA58]
Length = 332
Score = 49.3 bits (116), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 61/270 (22%), Positives = 116/270 (42%), Gaps = 24/270 (8%)
Query: 53 EILRKQQITSL---QKDSASSRLRTRDSKSLRNFVKKLNLKAILV----DENIVNKLRAA 105
E RK+++ ++ +SA + L R +++ N K ++ +N+ +++
Sbjct: 29 EKARKRRVATIRGRHGESAEALLEARMRRAISNRPTGAEAKMLVSLVPNPDNLTKRIKMT 88
Query: 106 GFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPS 165
G +++L+ + + I LI ++ + G+ + F + VGA G P
Sbjct: 89 G--KKWTLSQYMTACAI--IFLLITALLALRGFP----FFFAMLVGAA-----AGLGLPH 135
Query: 166 VWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLT 225
W+ L+ KR S +PDAL+LL + SG+ I + L V+ +I G P+ EE L
Sbjct: 136 WWVGRLITKRVSQFNAKFPDALELLTRGLRSGLPIAETLGVVSNEIPG---PVGEEFKLI 192
Query: 226 IAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLM 285
+ + A + +R + L G ++ ++L L + R M
Sbjct: 193 TERIKIGRTMEQALQETADRLGTAEFQFFVITLSIQRETGGNLAETLSNLATVLRQRSQM 252
Query: 286 EAEKKAASLGPKLTVPMIIFFLPVLILVII 315
+ + +A S K + II LP L+ +I
Sbjct: 253 KLKIRAMSSESKASA-YIIGVLPFLVFGMI 281
>gi|194366101|ref|YP_002028711.1| type II secretion system protein [Stenotrophomonas maltophilia
R551-3]
gi|194348905|gb|ACF52028.1| type II secretion system protein [Stenotrophomonas maltophilia
R551-3]
Length = 311
Score = 49.3 bits (116), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 89/186 (47%), Gaps = 22/186 (11%)
Query: 153 VILIGYV--GFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAED 210
+++IG + G P +S+ V++R+ ++ + P +DLL + G S+DQ+L+ + +
Sbjct: 130 MVVIGALAAGLLLPKFVLSSWVKRRRRAVDKELPLLIDLLRLLQGVGFSMDQSLQTLGDK 189
Query: 211 IGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM----------DCVRNATQALIQ 260
+ L E L VA+ + R Q D + + Q ++Q
Sbjct: 190 LRDALPVLGGE----------LQEANVAYTHGRTRAQSLRRLSEVYADDDLSSLMQLILQ 239
Query: 261 SDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAIL 320
+G ++ + LR R +R ++K L K+TV M++ LP L+LV+ GPA++
Sbjct: 240 VHAHGGAVQEPLRQFSIRLREQRRNTLKEKVGKLSVKMTVVMMLTLLPALMLVLAGPALV 299
Query: 321 SIIDTM 326
++ TM
Sbjct: 300 ALATTM 305
>gi|253576286|ref|ZP_04853617.1| type II secretion system protein [Paenibacillus sp. oral taxon 786
str. D14]
gi|251844413|gb|EES72430.1| type II secretion system protein [Paenibacillus sp. oral taxon 786
str. D14]
Length = 291
Score = 49.3 bits (116), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 66/147 (44%), Gaps = 8/147 (5%)
Query: 172 VQKRQSSIKRAWPDALDLLLICVESGISIDQALR----RVAEDIGGQSVPLSEEMLLTIA 227
VQ+R+ ++ P+ L+ +++ V +G ++ QA++ R E IG PL E+L
Sbjct: 138 VQRREQAVLLELPELLNKIVLLVGAGSTVQQAMKLCLERKREQIGH---PLYRELLQMQK 194
Query: 228 ELSFLPNRQVAFENFYNRTQMDCVRNATQA-LIQSDRYGTSIGDSLRVLVSETRSERLME 286
E + Q A E F R + V T A L+ R G +LR L +R
Sbjct: 195 EWEGGDSFQQAMEGFSKRCGIQEVSAFTTAVLLNYRRGGEDFALALRDLSHSLWEKRKAV 254
Query: 287 AEKKAASLGPKLTVPMIIFFLPVLILV 313
KL PM++ F+ VLILV
Sbjct: 255 GRTLGEQASSKLVFPMVLLFMAVLILV 281
>gi|330976793|gb|EGH76829.1| type II secretion system protein [Pseudomonas syringae pv. aptata
str. DSM 50252]
Length = 294
Score = 49.3 bits (116), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 52/238 (21%), Positives = 106/238 (44%), Gaps = 6/238 (2%)
Query: 86 KLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYP 145
++ ++I +D L G+R ++ ++ VP+ +++ I+ + K ++ P
Sbjct: 56 RIGQRSISLDSETQILLNRIGWRRASKRSLFAACQVGVPVGLMVIVILGQLLFFKGIQQP 115
Query: 146 FQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALR 205
+ + +G G+ P ++ + ++RQ + + LL I ESG++++QALR
Sbjct: 116 L---IAPIFALG-AGYLLPKRILATVARRRQKQVVVEISTFIPLLRILFESGMAVEQALR 171
Query: 206 RVAEDIGGQSVP-LSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRY 264
V + G +P LSEE+ + + + +D + + L Q
Sbjct: 172 -VLSNEGKDLLPVLSEEIRVVLMRVDSGLELGEELRKTAALLDVDELSDTCVILNQLIHQ 230
Query: 265 GTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
G SL L RL ++ + L K++V M++F P L++V+ GP ++I
Sbjct: 231 GGGALKSLLTLKQLIDDRRLTRLQEYISKLSAKMSVVMMVFLFPALLIVLAGPGFMAI 288
>gi|238755456|ref|ZP_04616796.1| hypothetical protein yruck0001_3330 [Yersinia ruckeri ATCC 29473]
gi|238706297|gb|EEP98674.1| hypothetical protein yruck0001_3330 [Yersinia ruckeri ATCC 29473]
Length = 268
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 76/147 (51%), Gaps = 9/147 (6%)
Query: 181 RAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSE--EMLLTIAELSFLPN--RQ 236
A P +D++ C+++G++I+ AL A++ + LS ++ +E+ L ++
Sbjct: 122 EAIPLFIDMVAACIQAGMTIESALTHTAKNFESINRDLSMLFNKIMKKSEIIGLEKSIKE 181
Query: 237 VAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGP 296
V+ +M C L S +G+++ + L L +E + +L+ AE+ + L
Sbjct: 182 VSIVAPSTEIKMFC-----STLQYSLSFGSTVYEQLNTLSAEIKKMQLLIAEEILSKLST 236
Query: 297 KLTVPMIIFFLPVLILVIIGPAILSII 323
KLT+P+ +F + I++I+ P+IL I
Sbjct: 237 KLTLPLFLFMVIPFIVLILSPSILGFI 263
>gi|110626527|gb|ABG79011.1| TadC [Yersinia ruckeri]
Length = 277
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 76/147 (51%), Gaps = 9/147 (6%)
Query: 181 RAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSE--EMLLTIAELSFLPN--RQ 236
A P +D++ C+++G++I+ AL A++ + LS ++ +E+ L ++
Sbjct: 131 EAIPLFIDMVAACIQAGMTIESALTHTAKNFESINRDLSMLFNKIMKKSEIIGLEKSIKE 190
Query: 237 VAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGP 296
V+ +M C L S +G+++ + L L +E + +L+ AE+ + L
Sbjct: 191 VSIVAPSTEIKMFC-----STLQYSLSFGSTVYEQLNTLSAEIKKMQLLIAEEILSKLST 245
Query: 297 KLTVPMIIFFLPVLILVIIGPAILSII 323
KLT+P+ +F + I++I+ P+IL I
Sbjct: 246 KLTLPLFLFMVIPFIVLILSPSILGFI 272
>gi|315497461|ref|YP_004086265.1| type II secretion system f domain protein [Asticcacaulis
excentricus CB 48]
gi|315415473|gb|ADU12114.1| Type II secretion system F domain protein [Asticcacaulis
excentricus CB 48]
Length = 326
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 63/134 (47%), Gaps = 3/134 (2%)
Query: 160 GFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLS 219
G+ AP W+S L ++R + + DA+D+L+ ++SG+ + L+ +A+++ PL
Sbjct: 132 GYGAPRWWLSFLAKRRTTKFTANFADAIDILVRGIKSGLPVHDGLKIIAKEL---PAPLG 188
Query: 220 EEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSET 279
E +S ++ E R +R T + + G ++ ++L L
Sbjct: 189 PEFQRLNENISIGMGLDMSLEKMCERMPTPELRFFTIVIAIQQKTGGNLAEALGNLSHVL 248
Query: 280 RSERLMEAEKKAAS 293
RS R+M + KA S
Sbjct: 249 RSRRMMREKIKALS 262
>gi|302185193|ref|ZP_07261866.1| type II secretion system protein [Pseudomonas syringae pv. syringae
642]
Length = 294
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 52/238 (21%), Positives = 105/238 (44%), Gaps = 6/238 (2%)
Query: 86 KLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYP 145
++ ++I +D L G+R ++ ++ VP+ + + I+ + K ++ P
Sbjct: 56 RIGQRSITLDSETQMLLNRIGWRRASKRSLFAACQVGVPVGLMAMVILGQLLFFKGIQQP 115
Query: 146 FQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALR 205
+ + +G G+ P ++ + ++RQ + + LL I ESG++++QALR
Sbjct: 116 L---IAPIFALG-AGYLLPKRILAAVARRRQKQVVVEISTFIPLLRILFESGMAVEQALR 171
Query: 206 RVAEDIGGQSVP-LSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRY 264
V + G +P LSEE+ + + + +D + + L Q
Sbjct: 172 -VLSNEGKDLLPVLSEEIRVVLMRVDSGLELGEELRKTAALLDVDELSDTCVILNQLIHQ 230
Query: 265 GTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
G SL L RL ++ + L K++V M++F P L++V+ GP ++I
Sbjct: 231 GGGALKSLLTLKQLIDDRRLTRLQEYISKLSAKMSVVMMVFLFPALLIVLAGPGFMAI 288
>gi|163857687|ref|YP_001631985.1| putative Flp pilus assembly protein [Bordetella petrii DSM 12804]
gi|163261415|emb|CAP43717.1| putative Flp pilus assembly protein [Bordetella petrii]
Length = 332
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 79/172 (45%), Gaps = 1/172 (0%)
Query: 153 VILIGY-VGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDI 211
+ IG+ VG+ P + V+ R+ + P +DLL + G+S+DQ+L + D
Sbjct: 151 TLFIGFAVGYLLPKWMLVRRVKARKKQAGKELPLLVDLLRLLQGVGLSVDQSLSVIVNDF 210
Query: 212 GGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDS 271
L E ++ A + R+ + D + + L+Q DR+G ++ +
Sbjct: 211 TPVLPVLGHEFGVSTAVYARGRTREQSLARLSQGFDDDDLAAICRLLVQVDRHGGAVQEP 270
Query: 272 LRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSII 323
L R +R E ++K L K+T MI+ LP L++V G ILS++
Sbjct: 271 LNRFAQRIRDKRRFELKEKIGRLTVKMTGVMIVTLLPALLIVTGGMGILSVL 322
>gi|66047622|ref|YP_237463.1| type II secretion system protein [Pseudomonas syringae pv. syringae
B728a]
gi|63258329|gb|AAY39425.1| type II secretion system protein [Pseudomonas syringae pv. syringae
B728a]
Length = 294
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 52/238 (21%), Positives = 106/238 (44%), Gaps = 6/238 (2%)
Query: 86 KLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYP 145
++ ++I +D L G+R ++ ++ VP+ +++ I+ + K ++ P
Sbjct: 56 RIGQRSISLDSETQILLNRIGWRRASKRSLFAACQVGVPVGLMVIVILGQLLFFKGIQQP 115
Query: 146 FQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALR 205
+ + +G G+ P ++ + ++RQ + + LL I ESG++++QALR
Sbjct: 116 L---IAPIFALG-AGYLLPKRILAAVARRRQKQVVVEISTFIPLLRILFESGMAVEQALR 171
Query: 206 RVAEDIGGQSVP-LSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRY 264
V + G +P LSEE+ + + + +D + + L Q
Sbjct: 172 -VLSNEGKDLLPVLSEEIRVVLMRVDSGLELGEELRKTAALLDVDELSDTCVILNQLIHQ 230
Query: 265 GTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
G SL L RL ++ + L K++V M++F P L++V+ GP ++I
Sbjct: 231 GGGALKSLLTLKQLIDDRRLTRLQEYISKLSAKMSVVMMVFLFPALLIVLAGPGFMAI 288
>gi|254521552|ref|ZP_05133607.1| type II secretion system protein [Stenotrophomonas sp. SKA14]
gi|219719143|gb|EED37668.1| type II secretion system protein [Stenotrophomonas sp. SKA14]
Length = 311
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 86/176 (48%), Gaps = 2/176 (1%)
Query: 153 VILIGYV--GFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAED 210
+++IG + G P +S V++R+ +++ P +DLL + G S+DQ+L+ + +
Sbjct: 130 MVVIGALAAGLLLPKFALSAWVKRRRRAVENELPLLIDLLRLLQGVGFSMDQSLQTLGDK 189
Query: 211 IGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGD 270
+ L E+ + R + + D + + Q ++Q +G ++ +
Sbjct: 190 LRDALPILGGELQEANVAYTHGRTRAQSLRRLSDVYGDDDLSSLVQLILQVHAHGGAVQE 249
Query: 271 SLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
LR R +R ++K L K+TV M++ LP L+LV+ GPA++++ TM
Sbjct: 250 PLRQFSIRLREQRRNSLKEKVGKLSVKMTVVMMLTLLPALMLVLAGPALVALAATM 305
>gi|283457757|ref|YP_003362345.1| Flp pilus assembly protein TadC [Rothia mucilaginosa DY-18]
gi|283133760|dbj|BAI64525.1| Flp pilus assembly protein TadC [Rothia mucilaginosa DY-18]
Length = 310
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/164 (23%), Positives = 70/164 (42%), Gaps = 5/164 (3%)
Query: 157 GYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQ-S 215
G GF A W+ V KR+ + +P +++ + V +G S AL R+ G+ +
Sbjct: 144 GLSGFLARDWWLGEAVTKREKQLVAEFPALAEMMALSVTAGESALAALERICLTSRGELA 203
Query: 216 VPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVL 275
SE + T +S L A + F RT++ + + + + GT + D LR
Sbjct: 204 REFSEILAQTRTGVSLLS----ALQEFAERTRVPALSRFVEGIAVAIERGTPLADVLRAQ 259
Query: 276 VSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAI 319
+ R E + A + P++ F LP+ ++ + P +
Sbjct: 260 AQDVRDNAKRELMETAGKKEIAMLAPVVFFILPLTVIFAVFPGL 303
>gi|70734195|ref|YP_257835.1| type II secretion system protein F subunit [Pseudomonas fluorescens
Pf-5]
gi|68348494|gb|AAY96100.1| type II secretion system protein F domain [Pseudomonas fluorescens
Pf-5]
Length = 294
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 69/268 (25%), Positives = 124/268 (46%), Gaps = 38/268 (14%)
Query: 74 TRDSKSLRNFVK-----KLNLKAILVD---ENIVNKL--RAAGFRSEYSLNILLVVRLVV 123
TRDS+ L N+++ + +A+ +D + ++N+L R A RS ++ + + L V
Sbjct: 40 TRDSR-LGNWLRLLGDSRFGQRAVSMDSETQTLLNRLGWRRARERSLFAASQIATPVLAV 98
Query: 124 PIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAW 183
++ I + + K L P L +GA G+ P ++ ++RQ I
Sbjct: 99 CLVIFIQEVAFAQAQSKWL-VPM-LALGA-------GYLLPKRALAYAAKRRQKHIALEI 149
Query: 184 PDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIA------ELSFLPNRQ- 236
+ LL I ESG++++QALR ++ + L++E+ L +A EL N+
Sbjct: 150 STFIPLLRILFESGMAVEQALRVLSSEAQKLLPELTQELRLILARVDSGLELGHELNQTA 209
Query: 237 --VAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASL 294
+A + F + CV Q LI +L+ L+ + R RL E K +
Sbjct: 210 TLLAVDEFTD----TCV--ILQQLILQGGGAMKSLQALKQLLDDRRLTRLQEYISK---M 260
Query: 295 GPKLTVPMIIFFLPVLILVIIGPAILSI 322
K++V M++F P L++V+ GP +I
Sbjct: 261 SAKMSVVMMLFLFPALLIVLAGPGFTAI 288
>gi|303241710|ref|ZP_07328207.1| Type II secretion system F domain protein [Acetivibrio
cellulolyticus CD2]
gi|302590711|gb|EFL60462.1| Type II secretion system F domain protein [Acetivibrio
cellulolyticus CD2]
Length = 327
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/206 (22%), Positives = 96/206 (46%), Gaps = 7/206 (3%)
Query: 106 GFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDK---LLEYPFQLRVGAVILIGYVGFC 162
G++ + L + L+ P ++ + II F + +L L + I+ G +G+
Sbjct: 76 GYKKKIQLELQRAHILLKPEEYITVSIILFFAFGTFMFVLASSSSLAILVAIVGGVIGWV 135
Query: 163 APSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEM 222
PS++I ++KR + DA+ L+ +++G S QA+ V++++ G P++EE
Sbjct: 136 LPSLYIKIKIKKRLRILNDQLNDAIVLISNSLKAGYSFFQAVDIVSKEMTG---PMAEEF 192
Query: 223 LLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSE 282
E++F + A EN R D + A++ + G ++ + L + + R
Sbjct: 193 AQLQKEVNFGTTTEKALENLVTRVTSDDLELVVTAVLIQRQVGGNLSEVLDNISTTIRER 252
Query: 283 RLMEAEKKAASLGPKLTVPMIIFFLP 308
++ E K + +++ MII LP
Sbjct: 253 IRIKGEVKTVTAQGRMS-GMIIAALP 277
>gi|190574783|ref|YP_001972628.1| putative transmembrane type II secretion protein [Stenotrophomonas
maltophilia K279a]
gi|190012705|emb|CAQ46333.1| putative transmembrane type II secretion protein [Stenotrophomonas
maltophilia K279a]
Length = 311
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 88/186 (47%), Gaps = 22/186 (11%)
Query: 153 VILIGYV--GFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAED 210
+++IG + G P +S+ V++R+ ++ P +DLL + G S+DQ+L+ + +
Sbjct: 130 MVVIGALAAGLLLPKFILSSWVKRRRRAVDNELPLLIDLLRLLQGVGFSMDQSLQTLGDK 189
Query: 211 IGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM----------DCVRNATQALIQ 260
+ L E L VA+ + R Q D + + Q ++Q
Sbjct: 190 LRDALPVLGGE----------LQEANVAYTHGRTRAQSLRRLSEVYADDDLTSLMQLILQ 239
Query: 261 SDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAIL 320
+G ++ + LR R +R ++K L K+TV M++ LP L+LV+ GPA++
Sbjct: 240 VHAHGGAVQEPLRQFSIRLREQRRNTLKEKVGKLSVKMTVVMMLTLLPALMLVLAGPALV 299
Query: 321 SIIDTM 326
++ TM
Sbjct: 300 ALATTM 305
>gi|325963896|ref|YP_004241802.1| Flp pilus assembly protein TadB [Arthrobacter phenanthrenivorans
Sphe3]
gi|323469983|gb|ADX73668.1| Flp pilus assembly protein TadB [Arthrobacter phenanthrenivorans
Sphe3]
Length = 313
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 77/176 (43%), Gaps = 11/176 (6%)
Query: 152 AVILIGYV--GFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAE 209
AV ++G GF W+ V++R++ + +P +L+ + V +G S AL RV
Sbjct: 140 AVAVMGSAVGGFILRDYWLGAQVKRRETRMMAEFPSLAELMALAVSAGESATGALDRVCR 199
Query: 210 DIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIG 269
G+ LS E +AE A + F RT + + ++ + GT +
Sbjct: 200 SAKGE---LSREFSNILAETRAGKPLVQALQEFSARTDLAPLVRFVDGIVVAVERGTPLA 256
Query: 270 DSLRVL---VSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
D LR V +T LMEA K + VP++ LP+ ++ + P + +I
Sbjct: 257 DVLRAQAQDVRDTAKRDLMEAAGKKEI---AMMVPLVFGVLPLTVVFAVFPGLAAI 309
>gi|117928944|ref|YP_873495.1| type II secretion system protein [Acidothermus cellulolyticus 11B]
gi|117649407|gb|ABK53509.1| type II secretion system protein [Acidothermus cellulolyticus 11B]
Length = 311
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 78/174 (44%), Gaps = 13/174 (7%)
Query: 154 ILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGG 213
++ G A V +S Q+R + +P +LL + V +G S AL RV G
Sbjct: 142 VIAACCGAIARDVTLSREAQRRSRRMLAEFPTVAELLALAVGAGESPAAALERVVRVCRG 201
Query: 214 QSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLR 273
+ LS E ++E + A EN R +D + +I + + GT + D LR
Sbjct: 202 E---LSVEFARALSEARTGGSLVTALENLAARNPLDIMSRFVDGMIVAMQRGTPLADVLR 258
Query: 274 VLVSETRSERLMEAEKKAA-SLGPK----LTVPMIIFFLPVLILVIIGPAILSI 322
S+ R EA K++ +G + + VP++ LP+ +L + P+ +S+
Sbjct: 259 AQASDVR-----EAAKRSLLDIGGRKEIGMMVPVVFLILPITLLFALFPSFVSL 307
>gi|238793626|ref|ZP_04637249.1| Type II secretion system protein [Yersinia intermedia ATCC 29909]
gi|238727041|gb|EEQ18572.1| Type II secretion system protein [Yersinia intermedia ATCC 29909]
Length = 194
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 76/158 (48%), Gaps = 15/158 (9%)
Query: 148 LRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRV 207
L +G +LI + P I N++ K+ + + P +D+ CV+SG++ID AL
Sbjct: 33 LMIGLFMLITTIYL--PKFIIRNILNKKIKCLLNSLPFFIDITAACVQSGMTIDSALSYT 90
Query: 208 AEDIGGQSVPLSEEMLLTI------AELSFLPNRQVAFENFYNRTQMDCVRNATQALIQS 261
A+ + ++ ++ L + AE++ L + F+ T+ ++ AL S
Sbjct: 91 AKKF----ILINPDLSLIVTKITKRAEINGLESAIKEFQQLSTETE---IKMFCSALQYS 143
Query: 262 DRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLT 299
+G+++ D L L + R +L+ E+K + L KLT
Sbjct: 144 ISFGSTVYDQLIKLAQDMREMQLLVTEEKNSKLSTKLT 181
>gi|296129086|ref|YP_003636336.1| Type II secretion system F domain protein [Cellulomonas flavigena
DSM 20109]
gi|296020901|gb|ADG74137.1| Type II secretion system F domain protein [Cellulomonas flavigena
DSM 20109]
Length = 309
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/160 (23%), Positives = 71/160 (44%), Gaps = 9/160 (5%)
Query: 164 PSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEML 223
P ++ V +R++ + P +LL + V +G AL RV G+ L++E+
Sbjct: 150 PDWYLGRQVARREARLLAEMPTVTELLALAVSAGEGATGALERVVRQTRGE---LADELA 206
Query: 224 LTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSE- 282
T+AE A + +RT + + + + + G+ + D LR + R E
Sbjct: 207 RTLAEARAGAPLTTALQTLADRTGLPALARFAEGVAVAVERGSPLADVLRAQAQDVREEG 266
Query: 283 --RLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAIL 320
LM+ + L + VP++ LPV +L + P+++
Sbjct: 267 RRALMQTGGRKEVL---MMVPVVFLILPVTVLFAVFPSVV 303
>gi|307328261|ref|ZP_07607439.1| Type II secretion system F domain protein [Streptomyces
violaceusniger Tu 4113]
gi|306886095|gb|EFN17103.1| Type II secretion system F domain protein [Streptomyces
violaceusniger Tu 4113]
Length = 272
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 68/143 (47%), Gaps = 14/143 (9%)
Query: 184 PDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFY 243
P A DLL C+ +G +A V +GG P+ E + T AEL ++ E +
Sbjct: 131 PLAADLLTACLAAGAGPRKAAEAVGGSLGG---PVGERLAQTAAEL------RLGAEPAH 181
Query: 244 NRTQMDCVRNATQALIQS-DRYGTSIGDSLRV---LVSETRSERLMEAEKKAASLGPKLT 299
++ + A Q L ++ +R GT+ ++ L +E R+E+ A K+A G +
Sbjct: 182 AWGRIGALPGA-QGLARALERAGTTGAPAVEPVSRLAAECRAEQGRAAMKRADRTGVLVN 240
Query: 300 VPMIIFFLPVLILVIIGPAILSI 322
P+ FLP +LV + P ++ +
Sbjct: 241 APLAGCFLPAFLLVGLAPVMIGL 263
>gi|297193033|ref|ZP_06910431.1| integral membrane protein [Streptomyces pristinaespiralis ATCC
25486]
gi|197719837|gb|EDY63745.1| integral membrane protein [Streptomyces pristinaespiralis ATCC
25486]
Length = 262
Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/143 (23%), Positives = 59/143 (41%), Gaps = 6/143 (4%)
Query: 184 PDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFY 243
P A DL+ C+ +G S +A V E +GG P+ + T A+L A+ F
Sbjct: 122 PLAADLMAACISAGASPREAAEAVGESLGG---PVGAGLARTAAQLRLGAEPSPAWGCF- 177
Query: 244 NRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMI 303
++ + L ++D G D + L R+ER + +T P+
Sbjct: 178 --GEIPGAEPLARCLERADSAGAPAADPVSRLAGRLRAERARAVAGRGRRAQVLITAPVG 235
Query: 304 IFFLPVLILVIIGPAILSIIDTM 326
+ FLP + V + P ++ + +
Sbjct: 236 LCFLPAFLAVGVAPVVIGLAGGL 258
>gi|294012436|ref|YP_003545896.1| Flp pilus assembly protein TadB [Sphingobium japonicum UT26S]
gi|292675766|dbj|BAI97284.1| Flp pilus assembly protein TadB [Sphingobium japonicum UT26S]
Length = 332
Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 59/251 (23%), Positives = 102/251 (40%), Gaps = 31/251 (12%)
Query: 56 RKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVD-----ENIVNKLRAAGFRSE 110
R + I DS + L R K++ N N ++LV EN+ ++R G +
Sbjct: 35 RMELIRGRHSDSTDAILEARMRKAISNRPAG-NEASMLVSLVPNPENLAKRIRMTGKKWT 93
Query: 111 YSLNILLVVRLVVPIIFLIL-GIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWIS 169
S + +IFL L ++ + G+ L AV+L G P +W+S
Sbjct: 94 VSQYMT-----ACAVIFLALCALLMLRGFPPLF---------AVMLGLAAGLGLPHMWVS 139
Query: 170 NLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAEL 229
L++ R +PDAL+LL + SG+ I + L V+ ++ G P+ EE L +
Sbjct: 140 RLIKGRVLKFNAKFPDALELLTRGLRSGLPIAETLNVVSNEVPG---PVGEEFKLITERI 196
Query: 230 SFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSE------- 282
A + +R + +L G ++ ++L L + R
Sbjct: 197 KIGKTMDQALQETADRLGTPEFQFFVISLAIQRETGGNLAETLSNLATVLRQRAQMKLKI 256
Query: 283 RLMEAEKKAAS 293
R M +E KA++
Sbjct: 257 RAMSSESKASA 267
>gi|325264274|ref|ZP_08131005.1| putative bacterial type II secretion system protein F domain
protein [Clostridium sp. D5]
gi|324030345|gb|EGB91629.1| putative bacterial type II secretion system protein F domain
protein [Clostridium sp. D5]
Length = 410
Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 51/215 (23%), Positives = 93/215 (43%), Gaps = 25/215 (11%)
Query: 121 LVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWI------SNLVQK 174
LV+P I+W +YP + R + ++G V A +V+ ++
Sbjct: 206 LVLPDSLDGSKIVW--------KYPAESRAAGLFVLGIV--AAGAVFFLDRQKHKQVLAD 255
Query: 175 RQSSIKRAWPDALDLLLICVESGISIDQALRRVAE------DIGGQSVPLSEEMLLTIAE 228
R+ + +P + + + +G+S+ +A ++AE D G + EEM T+ E
Sbjct: 256 RKKQLAADYPQLISQFTLFLGAGMSVRRAWFKMAEEYEKRRDRKGPRIAY-EEMSYTMHE 314
Query: 229 LSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGT-SIGDSLRVLVSETRSERLMEA 287
+ + +E F +R + R L Q+ R G + + LR ++ +R +A
Sbjct: 315 IQGGVSEGECYERFGSRCGLPAYRRFGALLSQNLRKGGRGLNELLRKEAADAFEDRKKQA 374
Query: 288 EKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
K G KL PM + VLI++++ PA SI
Sbjct: 375 RKLGEEAGTKLLGPMFLMLAVVLIIIVV-PAFFSI 408
>gi|91775991|ref|YP_545747.1| type II secretion system protein [Methylobacillus flagellatus KT]
gi|91709978|gb|ABE49906.1| type II secretion system protein [Methylobacillus flagellatus KT]
Length = 300
Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/165 (21%), Positives = 74/165 (44%), Gaps = 3/165 (1%)
Query: 158 YVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVP 217
YVG W L +R+ I + L +L++ +SG+S++ +LR + E
Sbjct: 131 YVGIRYLLRW---LAARRRKMISKEITTFLYMLVMLFDSGLSLEHSLRIMVEQASDIMPH 187
Query: 218 LSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVS 277
L++E+ +A + ++ A + + + A L Q + G ++ DS+ +
Sbjct: 188 LAQELERVLARIRAGQDQGKALMSMSQMLDIPELSEAVAMLKQVAQQGGNVRDSIMRYAA 247
Query: 278 ETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
+ ++ + L K+T+ M+IF P L++ I GP + +
Sbjct: 248 LIEERQFSHLRERVSKLSAKMTIVMMIFMFPALMIFIAGPGFIGL 292
>gi|291303312|ref|YP_003514590.1| type II secretion system protein [Stackebrandtia nassauensis DSM
44728]
gi|290572532|gb|ADD45497.1| type II secretion system protein [Stackebrandtia nassauensis DSM
44728]
Length = 220
Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 61/141 (43%), Gaps = 6/141 (4%)
Query: 184 PDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFY 243
P ALD+ C+ SG +D+AL AE + ++ + L F++
Sbjct: 80 PFALDVFAACLHSGAPLDRALSTCAEAVNPALANRFRRAARSLTLGATLAEALTEFDSLA 139
Query: 244 NRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMI 303
+ ++ Q + +S G + DSL +L E R +R A A G + +P+
Sbjct: 140 DGHRL------VQTIGRSADTGARLADSLHLLAKELRFDREQAALSHAHRAGVWMVLPLC 193
Query: 304 IFFLPVLILVIIGPAILSIID 324
+ FLP I + P ++S +D
Sbjct: 194 LCFLPAFIAAGLLPVVISSLD 214
>gi|240139030|ref|YP_002963505.1| Pilus assembly protein, type II secretion protein [Methylobacterium
extorquens AM1]
gi|240009002|gb|ACS40228.1| Pilus assembly protein, type II secretion protein [Methylobacterium
extorquens AM1]
Length = 323
Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 75/314 (23%), Positives = 135/314 (42%), Gaps = 38/314 (12%)
Query: 14 LAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLR 73
LAV + AV+ SL Y ++P+L SGE + R+ L + Q ++ +A+SR R
Sbjct: 8 LAVGLV-AVAAGSLAYVFLMPAL-SGERRAEQR-----RKALGQPQAVLAERGAAASR-R 59
Query: 74 TRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGF---RSEYSLNILLVVRLVVPIIFLIL 130
+ +KSL+ K + + ++ +L AG R +Y R+V I ++L
Sbjct: 60 EQVAKSLKELEAKKDKTKVTLEL----RLARAGLDWSRQKY--------RVVSVITAVVL 107
Query: 131 GIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLL 190
++ ++ L VG GF P+ W+ ++R + P+A+D++
Sbjct: 108 ALVAFLASHNVIVAGLALFVG--------GFGLPAWWLKRRQKRRVEAFIEELPNAMDVV 159
Query: 191 LICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDC 250
+ + SGI + LR +A + PL E +T+ + + A Y R +
Sbjct: 160 VRGLRSGIPLGDCLRMIARE---AKEPLRSEFRVTMESQALGLSMSDAILRMYERVPVTE 216
Query: 251 VRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVL 310
V + + + G ++ ++L L R + M + +A S+ K + II LP
Sbjct: 217 VNFFSIVIGIQQKAGGNLSEALGNLSRVLRERKKMAGKIQAMSMEAKASAA-IIGALP-- 273
Query: 311 ILVIIGPAILSIID 324
V+ G LS D
Sbjct: 274 -FVVGGGTYLSSPD 286
>gi|289625308|ref|ZP_06458262.1| type II secretion system protein F domain [Pseudomonas syringae pv.
aesculi str. NCPPB3681]
gi|289647833|ref|ZP_06479176.1| type II secretion system protein F domain [Pseudomonas syringae pv.
aesculi str. 2250]
gi|330867142|gb|EGH01851.1| type II secretion system, protein F domain [Pseudomonas syringae
pv. aesculi str. 0893_23]
gi|330871030|gb|EGH05739.1| type II secretion system, protein F domain [Pseudomonas syringae
pv. aesculi str. 0893_23]
Length = 294
Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 53/238 (22%), Positives = 106/238 (44%), Gaps = 6/238 (2%)
Query: 86 KLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYP 145
++ ++I +D L G+R ++ ++ VP+ +++ I+ K + P
Sbjct: 56 RIGQRSISLDSETQMLLNRIGWRRASKRSLFAACQVGVPVGLMVVVIVAQLLLFKGVGQP 115
Query: 146 FQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALR 205
+ V +G +G+ P ++ + Q+RQ + + LL I ESG++++QALR
Sbjct: 116 L---IAPVFALG-IGYLLPKRILAAVAQRRQKQVVVEISTFIPLLRILFESGMAVEQALR 171
Query: 206 RVAEDIGGQSVP-LSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRY 264
++ + G +P LSEE+ + + + +D + + L Q
Sbjct: 172 VLSLE-GKDLLPVLSEEIRVVLVRVDSGLELGEELRKTAALLAVDELSDTCVILNQLIHQ 230
Query: 265 GTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
G SL L RL ++ + L K++V M++F P L++V+ GP ++I
Sbjct: 231 GGGALKSLLTLKQLIDDRRLTRLQEYISKLSAKMSVVMMVFLFPALLIVLAGPGFIAI 288
>gi|254561625|ref|YP_003068720.1| Pilus assembly protein, type II secretion protein [Methylobacterium
extorquens DM4]
gi|254268903|emb|CAX24864.1| Pilus assembly protein, type II secretion protein [Methylobacterium
extorquens DM4]
Length = 323
Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 77/316 (24%), Positives = 138/316 (43%), Gaps = 42/316 (13%)
Query: 14 LAVAITTAVSIFSLIYAVVIPSLGSGE--LEKRMKSVAVEREILRKQQITSLQKDSASSR 71
LAV + AV+ SL Y ++P+L SGE E+R K++ + +L ++ +A+SR
Sbjct: 8 LAVGLV-AVAAGSLAYVFLMPAL-SGERRAEQRRKALGQPKAVL-------AERGAAASR 58
Query: 72 LRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGF---RSEYSLNILLVVRLVVPIIFL 128
R + +KSL+ K + + ++ +L AG R +Y R+V I +
Sbjct: 59 -REQVAKSLKELEAKKDKTKVTLEL----RLARAGLDWSRQKY--------RVVSAITAV 105
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
+L + F ++ L VG GF P+ W+ ++R + P+A+D
Sbjct: 106 VLALAAFFVSHNVIVAGLALFVG--------GFGLPAWWLKRRQRRRVEAFIEELPNAMD 157
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
+++ + SGI + LR +A + PL E +T+ + + A Y R +
Sbjct: 158 VVVRGLRSGIPLGDCLRMIARE---AKEPLRSEFRVTMESQALGLSMSDAILRMYERVPV 214
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP 308
V + + + G ++ ++L L R + M + +A S+ K + II LP
Sbjct: 215 TEVNFFSIVIGIQQKAGGNLSEALGNLSRVLRERKKMAGKIQAMSMEAKASAA-IIGALP 273
Query: 309 VLILVIIGPAILSIID 324
V+ G LS D
Sbjct: 274 ---FVVGGGTYLSSPD 286
>gi|297159257|gb|ADI08969.1| hypothetical protein SBI_05849 [Streptomyces bingchenggensis BCW-1]
Length = 268
Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 58/134 (43%), Gaps = 6/134 (4%)
Query: 184 PDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFY 243
P A DLL C+E+G +A V +GG P+ E + AEL A+
Sbjct: 128 PLAADLLTACLEAGAGPYKAAEAVGRSLGG---PIGERLAQAAAELRLGGEPSAAWGRM- 183
Query: 244 NRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMI 303
+ +AL ++ G +S+ L ++ R+E+ +A+K+ T P+
Sbjct: 184 --GALPGAHGLARALERAGTTGAPAVESMSRLAADCRAEQGRQADKRVERATVLATAPLG 241
Query: 304 IFFLPVLILVIIGP 317
+LP +L+ + P
Sbjct: 242 ACYLPAFLLIGVAP 255
>gi|229588191|ref|YP_002870310.1| hypothetical protein PFLU0643 [Pseudomonas fluorescens SBW25]
gi|229360057|emb|CAY46911.1| putative membrane protein [Pseudomonas fluorescens SBW25]
Length = 298
Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/164 (23%), Positives = 74/164 (45%)
Query: 159 VGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPL 218
+G+ P ++ + RQ +I + + LL I ESG++++Q+LR + + L
Sbjct: 128 IGYLLPKRVLAAAAKHRQQAIAKEISTFIPLLRILFESGMAVEQSLRVLGNEAQRLLPHL 187
Query: 219 SEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSE 278
+ E+ L +A + + ++D + L Q + G SL L
Sbjct: 188 THELRLILARVDSGLELGEELGKTVHVLEVDEFTDTCIILQQLIQQGGGAMKSLLALKQL 247
Query: 279 TRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
RL ++ + + K++V M++F P L++V+ GPA + I
Sbjct: 248 LDDRRLTRLQEYISKMSAKMSVVMMVFLFPALLIVLGGPAFIGI 291
>gi|116694144|ref|YP_728355.1| flp pilus assembly protein TadC [Ralstonia eutropha H16]
gi|113528643|emb|CAJ94990.1| flp pilus assembly protein TadC [Ralstonia eutropha H16]
Length = 345
Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 49/229 (21%), Positives = 96/229 (41%), Gaps = 20/229 (8%)
Query: 102 LRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGY--- 158
L G+ S + V+RL +P + ++W G A++ G+
Sbjct: 120 LEQCGWYGPQSRMLFGVLRLGLPSALALAAMLWHVGAGAF----------AIVAWGFGTF 169
Query: 159 -VGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVP 217
+ + AP + R + P +D+L + G+SIDQ+L+ + + G
Sbjct: 170 ALAYLAPKWHLRRRAAARLRMVDDELPVLIDMLRLLQGVGLSIDQSLQVIVAEFGSMLRV 229
Query: 218 LSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLR---V 274
L E+ + + +R+ + +++ L Q D++G ++ + LR +
Sbjct: 230 LGPELARANQQFASGRSREQTLLRIGRLFDSEDLKSLITLLTQVDKHGGAVQEPLRQFGL 289
Query: 275 LVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSII 323
+ E R RL + + L K+T M++ LPVL+++ GP L +I
Sbjct: 290 RMQEARKSRL---KDEIGRLTVKMTAVMVVSLLPVLLILTAGPGFLGVI 335
>gi|331086801|ref|ZP_08335878.1| hypothetical protein HMPREF0987_02181 [Lachnospiraceae bacterium
9_1_43BFAA]
gi|330409967|gb|EGG89402.1| hypothetical protein HMPREF0987_02181 [Lachnospiraceae bacterium
9_1_43BFAA]
Length = 431
Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 74/146 (50%), Gaps = 7/146 (4%)
Query: 183 WPDALDLLLICVESGISIDQALRRVAED-----IGGQSVPLSEEMLLTIAELSFLPNRQV 237
+P+ L+ ++ + +G+++ A ++++ D I G+ EEM T+ E+ + +
Sbjct: 285 YPEILNKFVLFLGAGMTVKAAWQKISSDYEKGKIMGKERFAYEEMAYTLREMQAGGSEKE 344
Query: 238 AFENFYNRTQMDCVRNATQALIQSDRYGT-SIGDSLRVLVSETRSERLMEAEKKAASLGP 296
+E+F R + C L Q+ + G+ + D LR+ ER A+K +G
Sbjct: 345 CYEHFGKRCEAVCYMRFGALLSQNLKRGSKGLADLLRLEAVNAFEERKRAAKKAGEEVGT 404
Query: 297 KLTVPMIIFFLPVLILVIIGPAILSI 322
KL PM F L V+++++I PA LS+
Sbjct: 405 KLLAPMF-FMLTVVLVIVIVPAFLSM 429
>gi|308068034|ref|YP_003869639.1| hypothetical protein PPE_01259 [Paenibacillus polymyxa E681]
gi|305857313|gb|ADM69101.1| Conserved hypothetical protein [Paenibacillus polymyxa E681]
Length = 290
Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 68/151 (45%), Gaps = 3/151 (1%)
Query: 172 VQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQS-VPLSEEMLLTIAELS 230
VQKR I P+ L +++ V +G ++ +AL E G + PL E+ T+AE
Sbjct: 137 VQKRDQQILMELPELLSKMMLLVGAGETVQRALLHCVERKGADTEHPLYRELRQTVAEWE 196
Query: 231 FLPNRQVAFENFYNRTQM-DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEK 289
+ Q AFE+ R + + T L+ R G+ +LR L +R +
Sbjct: 197 SGFSFQQAFEHLSKRCGIQEMTVFTTTVLLNMRRGGSDFVMALRELSQTLWGKRTSISRT 256
Query: 290 KAASLGPKLTVPMIIFFLPVLILVIIGPAIL 320
+ KL PM + L V++LV PA++
Sbjct: 257 RGEQASSKLVFPMALILLTVIVLV-GAPALM 286
>gi|197302282|ref|ZP_03167341.1| hypothetical protein RUMLAC_01009 [Ruminococcus lactaris ATCC
29176]
gi|197298713|gb|EDY33254.1| hypothetical protein RUMLAC_01009 [Ruminococcus lactaris ATCC
29176]
Length = 410
Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 66/150 (44%), Gaps = 7/150 (4%)
Query: 179 IKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLS-----EEMLLTIAELSFLP 233
++R +P ++ + + +G+S+ A +R+ ED EEM+ T ++
Sbjct: 260 MRRDYPQIINRFSLYIGAGMSVRNAWQRITEDYRKNKERTGRRKAYEEMIYTENQMKNKA 319
Query: 234 NRQVAFENFYNRTQMDCVRNATQALIQSDRYGT-SIGDSLRVLVSETRSERLMEAEKKAA 292
+E + R + R L Q+ R G+ + + L+ E ER +A K
Sbjct: 320 AESECYEEYGIRCGLSVYRRFGTLLSQNLRKGSKGLSELLKRETGEMFEERKKQARKLGE 379
Query: 293 SLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
G KL +P+ + V I+VI+ PA +I
Sbjct: 380 EAGTKLMIPLFMMLAVVFIIVIV-PAFFTI 408
>gi|293189314|ref|ZP_06608037.1| type II secretion system protein [Actinomyces odontolyticus F0309]
gi|292821777|gb|EFF80713.1| type II secretion system protein [Actinomyces odontolyticus F0309]
Length = 298
Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/172 (22%), Positives = 74/172 (43%), Gaps = 4/172 (2%)
Query: 152 AVILIGYV-GFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAED 210
A L+G + G +++ RQ +I + PD +LL + V +G SI A+ RVA
Sbjct: 126 ACALVGTLLGVAGMDRFLTMRANARQRAIDASVPDCSELLALAVAAGESIPAAIERVAGC 185
Query: 211 IGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGD 270
GG PL E+ LT + A + RT+ + ++ L + G+ +
Sbjct: 186 AGG---PLGAELSLTAGHIRNGTPSVRALADLVERTESPALTRLSRTLTTAIERGSPLAS 242
Query: 271 SLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
L + R L ++ + +P++ LPV ++ + P ++++
Sbjct: 243 VLHDQARDQRERSLAALMEEGGRREIAMLLPVVFLILPVTVMFALYPGLIAL 294
>gi|330938347|gb|EGH41975.1| type II secretion system protein [Pseudomonas syringae pv. pisi
str. 1704B]
Length = 204
Score = 46.2 bits (108), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 40/164 (24%), Positives = 75/164 (45%), Gaps = 2/164 (1%)
Query: 160 GFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVP-L 218
G+ P ++ + ++RQ + + LL I ESG++++QALR ++ + G +P L
Sbjct: 36 GYLLPKRILATVARRRQKQVVVEISTFIPLLRILFESGMAVEQALRVLSNE-GKDLLPVL 94
Query: 219 SEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSE 278
SEE+ + + + +D + + L Q G SL L
Sbjct: 95 SEEIRVVLMRVDSGLELGEELRKTAALLDVDELSDTCVILNQLIHQGGGALKSLLTLKQL 154
Query: 279 TRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
RL ++ + L K++V M++F P L++V+ GP ++I
Sbjct: 155 IDDRRLTRLQEYISKLSAKMSVVMMVFLFPALLIVLAGPGFMAI 198
>gi|33596973|ref|NP_884616.1| hypothetical protein BPP2380 [Bordetella parapertussis 12822]
gi|33566424|emb|CAE37677.1| putative membrane protein [Bordetella parapertussis]
Length = 328
Score = 46.2 bits (108), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 40/184 (21%), Positives = 81/184 (44%)
Query: 143 EYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQ 202
E P AV L +G+ P + + +R+ + P +DLL + G+S+DQ
Sbjct: 138 EMPLAYVACAVFLGFGLGWMVPKWMLLRRIARRRECAEAELPLFIDLLRLLQGVGLSVDQ 197
Query: 203 ALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSD 262
++ + +D L E+ + + + R+ + D + + ++Q D
Sbjct: 198 SMHVLIQDFRSVMPVLGGELKIAAEQYARGRTREQSLSRLAQGFDNDDLSAICRLIVQVD 257
Query: 263 RYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
R+G ++ D L R R +E + + A L K+T M++ LP L+++ G +++
Sbjct: 258 RHGGAVQDPLARFAERVRERRRLELKARVARLTVKMTGVMVVTLLPALLIITGGSGFVAL 317
Query: 323 IDTM 326
+ M
Sbjct: 318 LRGM 321
>gi|33600815|ref|NP_888375.1| hypothetical protein BB1830 [Bordetella bronchiseptica RB50]
gi|33568415|emb|CAE32327.1| putative membrane protein [Bordetella bronchiseptica RB50]
Length = 328
Score = 46.2 bits (108), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 40/184 (21%), Positives = 81/184 (44%)
Query: 143 EYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQ 202
E P AV L +G+ P + + +R+ + P +DLL + G+S+DQ
Sbjct: 138 EMPLAYVACAVFLGFGLGWMVPKWMLLRRIARRRECAEAELPLFIDLLRLLQGVGLSVDQ 197
Query: 203 ALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSD 262
++ + +D L E+ + + + R+ + D + + ++Q D
Sbjct: 198 SMHVLIQDFRSVMPVLGGELKIAAEQYARGRTREQSLSRLAQGFDNDDLSAICRLIVQVD 257
Query: 263 RYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
R+G ++ D L R R +E + + A L K+T M++ LP L+++ G +++
Sbjct: 258 RHGGAVQDPLARFAERVRERRRLELKARVARLTVKMTGVMVVTLLPALLIITGGSGFVAL 317
Query: 323 IDTM 326
+ M
Sbjct: 318 LRGM 321
>gi|257064723|ref|YP_003144395.1| Flp pilus assembly protein TadC [Slackia heliotrinireducens DSM
20476]
gi|256792376|gb|ACV23046.1| Flp pilus assembly protein TadC [Slackia heliotrinireducens DSM
20476]
Length = 205
Score = 46.2 bits (108), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 35/160 (21%), Positives = 78/160 (48%), Gaps = 16/160 (10%)
Query: 173 QKRQ----SSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAE 228
++RQ ++I+R P+ +D + + +++G+S D A G +E+ A+
Sbjct: 53 KRRQREASAAIERHVPEMMDAVALGMKAGLSFDSAF-------GLYHARFDDELARACAQ 105
Query: 229 L-----SFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSER 283
S L +R+ A + R +R + ++ ++G+SI L L +E ++
Sbjct: 106 AHTEWESGLVSREQALTDMAERFDSAPLRRFASNVSRNLKFGSSIVRVLGALSAEAQAAY 165
Query: 284 LMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSII 323
E+K A + ++ +P + LP +++V++GP +L ++
Sbjct: 166 RTRMEEKVAKVPVRMLMPTAMLILPAMLIVVLGPVMLELL 205
>gi|158317568|ref|YP_001510076.1| type II secretion system protein [Frankia sp. EAN1pec]
gi|158112973|gb|ABW15170.1| type II secretion system protein [Frankia sp. EAN1pec]
Length = 338
Score = 46.2 bits (108), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 46/197 (23%), Positives = 85/197 (43%), Gaps = 13/197 (6%)
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
L+L + +FG P + + V+ G A W++ +++R+ + +P
Sbjct: 146 LVLAMRTLFGVGP----PALVGIALVVAGAAGGILARDWWLTRAIREREDRMLMEFPTVA 201
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQ 247
+LL + V +G S AL RV+ G+ L E+ L +A+ + A E RT
Sbjct: 202 ELLALAVTAGESAIGALERVSRLTHGE---LGTELRLALADAHAGASLVQALEGIATRTS 258
Query: 248 MDCVRNATQALIQSDRYGTSIGDSLR---VLVSETRSERLMEAEKKAASLGPKLTVPMII 304
+ + + + GT + D LR V V E +L+EA + + +P++
Sbjct: 259 LPPLARFVDGMAVAIERGTPLADVLRAQAVDVREAGKRQLLEAGGRKEI---AMMIPVVF 315
Query: 305 FFLPVLILVIIGPAILS 321
LP ++ PA++S
Sbjct: 316 LILPTTVIFAFYPALVS 332
>gi|269926133|ref|YP_003322756.1| type II secretion system protein [Thermobaculum terrenum ATCC
BAA-798]
gi|269789793|gb|ACZ41934.1| type II secretion system protein [Thermobaculum terrenum ATCC
BAA-798]
Length = 336
Score = 46.2 bits (108), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 66/308 (21%), Positives = 139/308 (45%), Gaps = 21/308 (6%)
Query: 8 LFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDS 67
+F E +T A+ IF LI+ + + ++R+ + I R + TS +D+
Sbjct: 7 IFTQPENLAGVTVALGIF-LIFLGLTLYIKHRRWQERLHQL-----IGRHLEATSSSQDT 60
Query: 68 ASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIF 127
+ L K+L ++ + LK +++ +L AG + + ++VRL ++
Sbjct: 61 SPEIL---PQKALLSWRIREKLKDLIITPKFRRELLTAGL--GIAADKFILVRLAGALLC 115
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
L ++ I G YP R A I G+ P +++ ++R S+++R P A+
Sbjct: 116 SFLVMLLIPG-----NYPL-FRTIAAIFGLIAGYQLPRAYLALRRKRRLSALERQLPGAI 169
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQ 247
D+L +E+G S+ QA+ A ++ S P+S+E++ + + +++ A R
Sbjct: 170 DVLAGALEAGSSLAQAMMLAAREM---SNPISDELIKVVRDQELGLSQEEALRRMLERCP 226
Query: 248 MDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFL 307
+ + A+ R G S+ L+ + + R ++ E K + +++ I+ +
Sbjct: 227 SEDLDMMITAINIQYRVGGSLAHVLKSISTTIRERLRIKGEIKVLTAQGRISA-YIVTAI 285
Query: 308 PVLILVII 315
P L+ +I
Sbjct: 286 PFLLTAVI 293
>gi|78357407|ref|YP_388856.1| hypothetical protein Dde_2364 [Desulfovibrio desulfuricans subsp.
desulfuricans str. G20]
gi|78219812|gb|ABB39161.1| membrane protein, putative [Desulfovibrio desulfuricans subsp.
desulfuricans str. G20]
Length = 321
Score = 45.8 bits (107), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 53/115 (46%), Gaps = 9/115 (7%)
Query: 136 FGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVE 195
F + +LL F L GY+ P WI + +R + R PDALDL+ ++
Sbjct: 107 FAFIRLLTDNFWLCAVTPFAAGYL----PFAWILSRRTRRMNRFHRQLPDALDLIARALK 162
Query: 196 SGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDC 250
+G + Q +R VA++ P+ E +T+ E++F + A R +DC
Sbjct: 163 AGHAFPQGMRMVADEFAD---PVGPEFQITLDEINFGVSPDAALHAMTRR--VDC 212
>gi|253580448|ref|ZP_04857713.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
gi|251848178|gb|EES76143.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
Length = 348
Score = 45.8 bits (107), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 73/155 (47%), Gaps = 6/155 (3%)
Query: 172 VQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSV----PLSEEMLLTIA 227
+QKR + +P + + V++G+++ +A ++++ D G + P EE+ +
Sbjct: 190 LQKRYEELLMDYPGLIMKFTLLVQAGMTVRKAFQKISLDYGRKRKRNPRPAYEEIRIVCY 249
Query: 228 ELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGT-SIGDSLRVLVSETRSERLME 286
E+ + A+ F R + LIQ+ + G+ + D L +E ER +
Sbjct: 250 EMESGVSESEAYRRFGERCGQAKYKTFATLLIQNLQKGSRQMADMLERESTEAWEERKRK 309
Query: 287 AEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILS 321
A + KL VPMI+ + V+ +V+I PA +S
Sbjct: 310 ARVLGEAAATKLLVPMIMMLIVVMAIVMI-PAFMS 343
>gi|154507636|ref|ZP_02043278.1| hypothetical protein ACTODO_00117 [Actinomyces odontolyticus ATCC
17982]
gi|153797270|gb|EDN79690.1| hypothetical protein ACTODO_00117 [Actinomyces odontolyticus ATCC
17982]
Length = 298
Score = 45.8 bits (107), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 39/172 (22%), Positives = 74/172 (43%), Gaps = 4/172 (2%)
Query: 152 AVILIGYV-GFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAED 210
A L+G + G +++ RQ +I + PD +LL + V +G SI A+ RVA
Sbjct: 126 ACALVGTLLGVAGMDRFLTMRANARQRAIDASVPDCSELLALAVAAGESIPAAIERVAGC 185
Query: 211 IGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGD 270
GG PL E+ LT + A + RT+ + ++ L + G+ +
Sbjct: 186 AGG---PLGVELSLTAGHIRNGTPSVRALADLVERTESPALTRLSRTLTTAIERGSPLAS 242
Query: 271 SLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
L + R L ++ + +P++ LPV ++ + P ++++
Sbjct: 243 VLHDQARDQRERSLAALMEEGGRREIAMLLPVVFLILPVTVMFALYPGLIAL 294
>gi|187478773|ref|YP_786797.1| pilus assembly protein [Bordetella avium 197N]
gi|115423359|emb|CAJ49893.1| putative pilus assembly protein [Bordetella avium 197N]
Length = 283
Score = 45.8 bits (107), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 34/146 (23%), Positives = 63/146 (43%), Gaps = 8/146 (5%)
Query: 184 PDALDLLLICVESGISIDQALRRVAEDIGGQSVP---LSEEMLLTIAELSFLPNRQVAFE 240
P LD++ +C+E+G + A+ + + P L+ + + E+ +++ A
Sbjct: 143 PFLLDVMTLCLEAGQGMVNAMY-----LAARHCPPGLLTTALRQALNEMRAGRSQREALL 197
Query: 241 NFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV 300
R + V AL Q+DR G G LR L S+ R E AE+ A K+
Sbjct: 198 AMAARLDVAGVHAWVAALTQADRLGGGAGGVLRALASQLREEAFQRAEEAAMRAPVKMLF 257
Query: 301 PMIIFFLPVLILVIIGPAILSIIDTM 326
P++ P L++ P ++ + +
Sbjct: 258 PLVTCMFPCTFLILAFPLVVDLAPAL 283
>gi|92113785|ref|YP_573713.1| type II secretion system protein [Chromohalobacter salexigens DSM
3043]
gi|91796875|gb|ABE59014.1| type II secretion system protein [Chromohalobacter salexigens DSM
3043]
Length = 297
Score = 45.4 bits (106), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 47/225 (20%), Positives = 98/225 (43%), Gaps = 4/225 (1%)
Query: 102 LRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGF 161
LR AGF + LL V ++ + +LG++W + + + L + L G V +
Sbjct: 71 LRQAGFIGSRAQARLLAVLGILAVSVTLLGMLWGWEQGRGVAGSLFLGLALGALTGVVAW 130
Query: 162 CAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEE 221
W+ N ++R + L + + E+G++++ L+ + +++ + E
Sbjct: 131 A----WLKNRRRRRTRVLDEEIGLVLQVTRMLWEAGMTLESVLQGLIDNLANTAPETVRE 186
Query: 222 MLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRS 281
+ ++ R+ A E + + + + L Q G DSLR L R
Sbjct: 187 LRSVTHKIEAGQAREEALEEVAGIQASEGLGDLLKLLAQVSASGGGARDSLRTLADLLRD 246
Query: 282 ERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
R ++ L K+++ M++F P L++V+ GPA+L++ +
Sbjct: 247 RRRTRLQEAVTRLSGKMSLVMMVFLFPALLIVLAGPAVLNLAGAL 291
>gi|221067369|ref|ZP_03543474.1| type II secretion system protein [Comamonas testosteroni KF-1]
gi|220712392|gb|EED67760.1| type II secretion system protein [Comamonas testosteroni KF-1]
Length = 329
Score = 45.4 bits (106), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 66/140 (47%), Gaps = 4/140 (2%)
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
L+LGI +F L F L + V+L G V C P +++ +R ++R P+AL
Sbjct: 103 LLLGIGILFFLGALAASMFHLPMELVLLAGAVLGCLPWLYLQRKRNQRLGLLERQIPEAL 162
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQ 247
DL+ + +G + L+ E++ S P++ E L E+++ + Q A N R
Sbjct: 163 DLIARALRAGHAFSAGLQMAGEEL---SEPIAGEFRLVHDEINYGTSLQQALNNLGERIP 219
Query: 248 MDCVRNATQA-LIQSDRYGT 266
+ +R A LIQ + G
Sbjct: 220 ITDLRYFIVAVLIQRESGGN 239
>gi|257069182|ref|YP_003155437.1| Flp pilus assembly protein TadB [Brachybacterium faecium DSM 4810]
gi|256560000|gb|ACU85847.1| Flp pilus assembly protein TadB [Brachybacterium faecium DSM 4810]
Length = 314
Score = 45.4 bits (106), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 71/279 (25%), Positives = 124/279 (44%), Gaps = 32/279 (11%)
Query: 56 RKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVN-------KLRAAGFR 108
R + ++ ++SRLR L N + + ++ + V E + +LR AG R
Sbjct: 46 RSRSMSLFAAPRSTSRLRM----VLENLLGPVAVRVLGVLERLTGGNDQLERRLRLAGRR 101
Query: 109 SEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYV--GFCA-PS 165
S S + V ++V I L+LG++ L LR G+ L+G V GF A
Sbjct: 102 S--STDSFRVEQVVFGAIGLVLGVV-------LAVMAIALR-GSSPLLGLVIVGFGALTG 151
Query: 166 VWISNL-----VQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSE 220
V + + +++R + + R +P DLL + V +G S A+ RVA G L +
Sbjct: 152 VLLRDYLLGVEIKRRATRMAREFPTVADLLALAVAAGESPIAAMERVARTSHGA---LPD 208
Query: 221 EMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETR 280
E T+A++ + A + RT +D + + + + GT + + LR + R
Sbjct: 209 EFAATVADIRAGTSVSQALASLGTRTPLDSLGRFGEGVSIAIERGTPLAEVLRAQAQDAR 268
Query: 281 SERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAI 319
E E + A + VP++ F LP++I+ I P +
Sbjct: 269 EESKRELMETAGQREILMLVPVVFFVLPLVIVFAIFPGL 307
>gi|261856882|ref|YP_003264165.1| type II secretion system F domain protein [Halothiobacillus
neapolitanus c2]
gi|261837351|gb|ACX97118.1| Type II secretion system F domain protein [Halothiobacillus
neapolitanus c2]
Length = 284
Score = 45.4 bits (106), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 76/165 (46%), Gaps = 7/165 (4%)
Query: 164 PSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEML 223
P + + L Q+R I++ PD L ++ + +G+ AL +A D PL++E
Sbjct: 94 PKKFYAWLKQRRIDKIQQQLPDGLMMVSGSMRAGLGFTAALESLARD---TDPPLAQEFA 150
Query: 224 LTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSER 283
L + E + A +F +R + V A+ S G ++ +SL L S R
Sbjct: 151 LVLREQRMGVKLEDALLHFNDRVPVQDVTLFVSAVNISREVGGNLAESLTSLASTLRRRL 210
Query: 284 LMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMKD 328
+ME + K+ + +L +++ +PV +L + L+ DTM D
Sbjct: 211 IMEGKVKSLTAQGRLQ-GIVMALMPVGLLTFL---TLAYPDTMHD 251
>gi|238923484|ref|YP_002937000.1| hypothetical protein EUBREC_1104 [Eubacterium rectale ATCC 33656]
gi|238875159|gb|ACR74866.1| Hypothetical protein EUBREC_1104 [Eubacterium rectale ATCC 33656]
Length = 289
Score = 45.4 bits (106), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 79/172 (45%), Gaps = 14/172 (8%)
Query: 150 VGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAE 209
V I+ +V F S+ ++KR + + + + L + +G+ + A VA
Sbjct: 118 VAIFIMFAFVAFYYYGTSASDKIKKRSEELLSDFSNVVSKLALLTNAGLIMRDAWADVAY 177
Query: 210 DIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIG 269
+ + L +EM +++ E+ + A +F NR + ++ +IQ G S
Sbjct: 178 N---GNTTLYKEMQISVDEMKNGVSETEAIYHFGNRCIIPEIKKFASTIIQGIEKGNS-- 232
Query: 270 DSLRVLVSETRSE------RLMEAEKKAASLGPKLTVPMIIFFLPVLILVII 315
L L+ E +E +L++ E + AS KL +PM + F+ +LI+VI+
Sbjct: 233 -ELTALLQEQSAETWNLKRQLVKREGEKAS--SKLLIPMFLMFMGILIMVIV 281
>gi|332382440|gb|AEE67287.1| hypothetical protein BPTD_1970 [Bordetella pertussis CS]
Length = 328
Score = 45.4 bits (106), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 37/178 (20%), Positives = 81/178 (45%), Gaps = 1/178 (0%)
Query: 150 VGAVILIGY-VGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVA 208
V + +G+ +G+ P + + +R+ + P +DLL + G+S+DQ++ +
Sbjct: 144 VACAVFLGFGLGWMVPKWMLLRRIARRRECAEAELPLFIDLLRLLQGVGLSVDQSMHVLI 203
Query: 209 EDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSI 268
+D L E+ + + + R+ + D + + ++Q DR+G ++
Sbjct: 204 QDFRSVMPVLGGELKIAAEQYARGRTREQSLSRLAQGFDNDDLSAICRLIVQVDRHGGAV 263
Query: 269 GDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
D L R R +E + + A L K+T M++ LP L+++ G ++++ M
Sbjct: 264 QDPLARFAERVRERRRLELKARVARLTVKMTGVMVVTLLPALLIITGGSGFVALLRGM 321
>gi|295690794|ref|YP_003594487.1| type II secretion system F domain-containing protein [Caulobacter
segnis ATCC 21756]
gi|295432697|gb|ADG11869.1| Type II secretion system F domain protein [Caulobacter segnis ATCC
21756]
Length = 325
Score = 45.4 bits (106), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 50/223 (22%), Positives = 100/223 (44%), Gaps = 25/223 (11%)
Query: 97 NIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGI---IWIFGYDKLLEYPFQLRVGAV 153
+I +++AAG L ++ + L V +I ++L + +WI +GA
Sbjct: 81 SIAARMQAAGLGPNVRLFWMVSLGLAVGVILIVLALGQTVWI-------------ALGA- 126
Query: 154 ILIGYV-GFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIG 212
G+ G P +S L Q R A+ DA+D+++ ++SG+ + LR + ++
Sbjct: 127 ---GFAAGLGLPRWLLSILAQGRIRKFTEAFSDAIDIIVRGIKSGLPLHDCLRIIGQE-- 181
Query: 213 GQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSL 272
PL+ E + ++ A + + R + +R L + G ++ ++L
Sbjct: 182 -SPEPLAGEFRMLTENVAMGVPLDAALDKMHERMPTNELRFFAIVLAIQQKTGGNLAEAL 240
Query: 273 RVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVII 315
L + RS ++M+ + KA S + +II LP ++V+I
Sbjct: 241 GNLSTVLRSRKMMKEKIKALS-AEAVASALIIGALPPGVIVLI 282
>gi|94312590|ref|YP_585799.1| type II secretion system protein, transmembrane [Cupriavidus
metallidurans CH34]
gi|93356442|gb|ABF10530.1| type II secretion system protein, transmembrane [Cupriavidus
metallidurans CH34]
Length = 369
Score = 45.4 bits (106), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 34/146 (23%), Positives = 66/146 (45%)
Query: 178 SIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQV 237
S+ P +D+L + G+SIDQ+L+ + + G L E+ + + + +R+
Sbjct: 214 SVADELPILIDMLRLLQGVGLSIDQSLQIIVTEFGSMLQVLGPELQRSNQQFASGRSREQ 273
Query: 238 AFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPK 297
+ ++ L Q DR+G ++ + LR + R + K L K
Sbjct: 274 TLLRIGKLFDDEDLKGLITLLTQVDRHGGAVQEPLRQFGERLQIARKARMKDKIGRLTVK 333
Query: 298 LTVPMIIFFLPVLILVIIGPAILSII 323
+T M++ LPVL+++ GP L ++
Sbjct: 334 MTGVMVVSLLPVLLILTAGPGFLGVM 359
>gi|307721765|ref|YP_003892905.1| hypothetical protein Saut_1849 [Sulfurimonas autotrophica DSM
16294]
gi|306979858|gb|ADN09893.1| hypothetical protein Saut_1849 [Sulfurimonas autotrophica DSM
16294]
Length = 278
Score = 45.1 bits (105), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 81/168 (48%), Gaps = 7/168 (4%)
Query: 153 VILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIG 212
VI IG F P +++ ++ R I+ P +DLL+I +E G ++ A+ +V +
Sbjct: 105 VIGIGIAVFM-PYLYLQEQIKARIKRIENDLPIFIDLLIIILEGGGGLNNAIDKVTTE-- 161
Query: 213 GQSVPLSEEMLLTIAEL--SFLP-NRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIG 269
G+SV L ++L + F+ + +A+ N NRT D + + S+ G +
Sbjct: 162 GESV-LGPDLLEESKKFKNEFITYSSDIAYTNLVNRTGSDSIATIVGFMRLSEETGIGVK 220
Query: 270 DSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGP 317
E +S ++ EKKAA++ +T M IF LP +I +I P
Sbjct: 221 SIFENQAQELKSMEMLNIEKKAATMNIGITFVMFIFILPAVIAMIAFP 268
>gi|238897544|ref|YP_002923223.1| putative tight adherance operon protein C [Candidatus Hamiltonella
defensa 5AT (Acyrthosiphon pisum)]
gi|229465301|gb|ACQ67075.1| putative tight adherance operon protein C [Candidatus Hamiltonella
defensa 5AT (Acyrthosiphon pisum)]
Length = 275
Score = 45.1 bits (105), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 33/143 (23%), Positives = 73/143 (51%), Gaps = 7/143 (4%)
Query: 159 VGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPL 218
+GF + I +++ ++ + ++P +D+ C+++G++I+ AL AE+ + +
Sbjct: 108 IGF--YQLLIKSIIFRKTRLMLSSFPFFIDMTAACIQAGMTIENALTYSAENFYKINEDI 165
Query: 219 SEEMLLTI--AELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLV 276
+ ++ + AE+ L N A + Y ++ A+ S +G+S+ + L
Sbjct: 166 ASLIIQVVRKAEVHGLQN---AMKTLYQDVSFLEIKMFCNAVQNSVDFGSSVYEHLMKFS 222
Query: 277 SETRSERLMEAEKKAASLGPKLT 299
++ R +LME+E+K + L KLT
Sbjct: 223 TDIREIQLMESEEKISKLSVKLT 245
>gi|304392380|ref|ZP_07374321.1| type II secretion system protein [Ahrensia sp. R2A130]
gi|303295484|gb|EFL89843.1| type II secretion system protein [Ahrensia sp. R2A130]
Length = 332
Score = 45.1 bits (105), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 66/296 (22%), Positives = 130/296 (43%), Gaps = 37/296 (12%)
Query: 29 YAVVIPSLGSGELEK-RMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKL 87
YA++ S+ S + K RM+ + ++++ K ++ S + D R ++R++ +L+N +
Sbjct: 22 YALLYNSIASDKKSKERMQRLQMDKKT--KMKVESRKMDEKQRR-KSREA-ALKNVDDQK 77
Query: 88 NLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQ 147
+ E L AGF SL VV V+ I+F + ++++
Sbjct: 78 SKGKTAGKETFREILEQAGF--TISLGKFYVVSAVIGILFFFIALVFM------------ 123
Query: 148 LRVGAVILIGYVGFC-----APSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQ 202
GA + I AP W+ +KR ++ + +P+A+D+++ ++SG+ ++
Sbjct: 124 ---GATLPIAGGVGFVMGFGAPRWWVKRKRKKRFAAFTKTFPNAIDVIVRGIKSGLPLND 180
Query: 203 ALRRVAEDIGGQSVPLSEEM--LLTIAELSF-LPNRQVAFENFYNRTQMDCVRNATQALI 259
LR +A D P+ E L+ A++ +P A E Y + +
Sbjct: 181 CLRIIATD---SDEPVRGEFRKLIEAAQMGIPVPE---ACERLYKSIPTSETNFFSIVIA 234
Query: 260 QSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVII 315
G ++ ++L L R R M + +A S K T MII LP ++ +++
Sbjct: 235 IQSSAGGNLSEALGNLSKVLRERRKMADKIQAFSSEAK-TSTMIIGALPFVVAIMV 289
>gi|14521588|ref|NP_127064.1| hypothetical protein PAB1458 [Pyrococcus abyssi GE5]
gi|5458807|emb|CAB50294.1| Hypothetical protein [Pyrococcus abyssi GE5]
Length = 355
Score = 45.1 bits (105), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 52/216 (24%), Positives = 103/216 (47%), Gaps = 22/216 (10%)
Query: 111 YSLNILLVVRLVVPIIFLILGII---WIFGYDKLLEYP--FQLRVG-AVILIG--YVGFC 162
Y NI++ L V ++ L +G+I + F + ++E P L +G A L+G Y+ F
Sbjct: 109 YRANIMMSKELYVALM-LAVGLISGVFAFLFGIIIEMPIDMSLLIGVAGFLLGFMYMRFY 167
Query: 163 APSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEM 222
SVW ++R ++RA P L + + +GI + + + VA+ G +SEE
Sbjct: 168 PKSVW-----RRRVEEVERALPYVLRHMASLLNAGIGLAETMVSVAKSDYGV---ISEEF 219
Query: 223 LLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSE 282
+ + E+ + + A +F + + D V + ++++ ++G ++ D L + E E
Sbjct: 220 RMMVQEMHKGSSFEDALASFEEKMKSDMVSRVVKQILRALKFGGNLADILYKMADEFSFE 279
Query: 283 ---RLMEAEKKAASLGPKLTVPMIIFFLPVLILVII 315
+LM+ +K G + +P L++V+I
Sbjct: 280 YRIKLMDYVQKIN--GISFVYMFMTVVMPTLLIVVI 313
>gi|84489955|ref|YP_448187.1| type II secretion protein F [Methanosphaera stadtmanae DSM 3091]
gi|84373274|gb|ABC57544.1| predicted type II secretion protein F [Methanosphaera stadtmanae
DSM 3091]
Length = 277
Score = 45.1 bits (105), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 71/152 (46%), Gaps = 15/152 (9%)
Query: 178 SIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQV 237
I + P L L I +++GI + A+ V+ GQ LS+E +T+ E+ + N
Sbjct: 100 DILKVIPYVLRELSIELKAGIGLFDAIEEVSNGNYGQ---LSKEFKITLNEIKYGTNYIE 156
Query: 238 AFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAAS---- 293
AFEN R + + + ++ G ++ D+L +L +E + R M+ + K S
Sbjct: 157 AFENLSKRINLPIMEKIVSHMNRTIINGGNLADTLNILANE--NSRNMQIKYKEYSEKLN 214
Query: 294 ------LGPKLTVPMIIFFLPVLILVIIGPAI 319
+ + +P+I+F + + +IGP +
Sbjct: 215 SLMILYMFTTVVIPVILFIMIIAATTVIGPIV 246
>gi|289641000|ref|ZP_06473169.1| type II secretion system protein [Frankia symbiont of Datisca
glomerata]
gi|289509120|gb|EFD30050.1| type II secretion system protein [Frankia symbiont of Datisca
glomerata]
Length = 315
Score = 45.1 bits (105), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 72/159 (45%), Gaps = 9/159 (5%)
Query: 167 WISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTI 226
W++ +++R+ I +P +LL + V +G S AL RV+ G+ L E+ L +
Sbjct: 158 WLTRAIREREERILIEFPTVAELLALAVTAGESPVGALERVSRLSHGE---LGRELRLAL 214
Query: 227 AELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLR---VLVSETRSER 283
A+ A E RT + + + + GT + + LR V V E +
Sbjct: 215 ADARAGATLVQALEGMATRTTVPSLARFVDGMAVAIERGTPLAEVLRAQAVDVREAGKRQ 274
Query: 284 LMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
L+EA + + VP++ F LP ++ PA++S+
Sbjct: 275 LLEAGGRKEI---AMMVPVVFFVLPTTVIFAFYPALVSL 310
>gi|296268209|ref|YP_003650841.1| type II secretion system protein [Thermobispora bispora DSM 43833]
gi|296090996|gb|ADG86948.1| type II secretion system protein [Thermobispora bispora DSM 43833]
Length = 260
Score = 45.1 bits (105), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 65/140 (46%), Gaps = 6/140 (4%)
Query: 184 PDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFY 243
P A+DLL+ C+ +G +D+A+ A+ IGG PL+E M +L + A+
Sbjct: 121 PFAIDLLVACLRAGQPVDRAVEVTADAIGG---PLAERMSWVAVQLRLGADPGTAWAGLA 177
Query: 244 NRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMI 303
+ + +I++ + G + D L L + R + A +G ++ P+
Sbjct: 178 DEPPAAPF---ARTMIRAAKGGAPVADVLVRLADDARQAARAASSAAARKVGVQVVAPLG 234
Query: 304 IFFLPVLILVIIGPAILSII 323
+ FLP +L+ I P I +I
Sbjct: 235 LCFLPAFVLLGIIPMIAGLI 254
>gi|325663219|ref|ZP_08151669.1| hypothetical protein HMPREF0490_02410 [Lachnospiraceae bacterium
4_1_37FAA]
gi|325470673|gb|EGC73903.1| hypothetical protein HMPREF0490_02410 [Lachnospiraceae bacterium
4_1_37FAA]
Length = 394
Score = 44.7 bits (104), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 73/146 (50%), Gaps = 7/146 (4%)
Query: 183 WPDALDLLLICVESGISIDQALRRVAED-----IGGQSVPLSEEMLLTIAELSFLPNRQV 237
+P+ L+ ++ + +G++ A ++++ D I G+ EEM T+ E+ + +
Sbjct: 248 YPEILNKFVLFLGAGMTAKAAWQKISSDYEKGKIMGKERFAYEEMAYTLREMQAGGSEKE 307
Query: 238 AFENFYNRTQMDCVRNATQALIQSDRYGT-SIGDSLRVLVSETRSERLMEAEKKAASLGP 296
+E+F R + C L Q+ + G+ + D LR+ ER A+K +G
Sbjct: 308 CYEHFGKRCEAVCYMRFGALLSQNLKRGSKGLADLLRLEAVNAFEERKRAAKKAGEEVGT 367
Query: 297 KLTVPMIIFFLPVLILVIIGPAILSI 322
KL PM F L V+++++I PA LS+
Sbjct: 368 KLLAPMF-FMLTVVLVIVIVPAFLSM 392
>gi|212635450|ref|YP_002311975.1| Tight adherence TadB-like transmembrane protein [Shewanella
piezotolerans WP3]
gi|212556934|gb|ACJ29388.1| Tight adherence TadB-like transmembrane protein, putative
[Shewanella piezotolerans WP3]
Length = 325
Score = 44.7 bits (104), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 51/95 (53%), Gaps = 4/95 (4%)
Query: 173 QKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFL 232
KR I+ ++PDALD+L +++G S A++ V E++ G PL++E L A +++
Sbjct: 144 NKRMDKIEESFPDALDVLRRALQAGYSFSDAVKLVTEEMEG---PLAKEFSLMFANINYS 200
Query: 233 PNRQVAFENFYNRT-QMDCVRNATQALIQSDRYGT 266
+ + A +F R + + A+ ++Q + G
Sbjct: 201 KDTKRALLSFIERVPSVSAMAFASAVMVQKETGGN 235
>gi|167648148|ref|YP_001685811.1| type II secretion system protein [Caulobacter sp. K31]
gi|167350578|gb|ABZ73313.1| type II secretion system protein [Caulobacter sp. K31]
Length = 325
Score = 44.7 bits (104), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 35/156 (22%), Positives = 72/156 (46%), Gaps = 4/156 (2%)
Query: 160 GFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLS 219
GF P + + + R A+ DA+D+++ ++SG+ ++ L+ + ++ PL+
Sbjct: 131 GFGLPRWVVGMMAKARTKKFTEAFSDAIDIIVRGIKSGLPVNDCLKIIGKEC---PEPLA 187
Query: 220 EEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSET 279
E + + + A E Y R + +R T L + G ++ ++L L +
Sbjct: 188 GEFRVLVENTGMGMSMDQALERMYERMPTNELRFFTIVLTIQAKTGGNLAEALGNLSTVL 247
Query: 280 RSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVII 315
R+ +LM + KA S + II LP ++++I
Sbjct: 248 RARKLMGEKIKALS-AEAVASAFIIGALPPGVVILI 282
>gi|163851907|ref|YP_001639950.1| type II secretion system protein [Methylobacterium extorquens PA1]
gi|163663512|gb|ABY30879.1| type II secretion system protein [Methylobacterium extorquens PA1]
Length = 323
Score = 44.7 bits (104), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 72/307 (23%), Positives = 130/307 (42%), Gaps = 37/307 (12%)
Query: 21 AVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSL 80
AV+ SL Y ++P+L SGE + R+ L + Q ++ +A+SR R + +KSL
Sbjct: 14 AVAAGSLAYVFLMPAL-SGERRAEQR-----RKALGQPQAVLAERGAAASR-REQVAKSL 66
Query: 81 RNFVKKLNLKAILVDENIVNKLRAAGF---RSEYSLNILLVVRLVVPIIFLILGIIWIFG 137
+ K + + ++ +L AG R +Y R+V I ++L +
Sbjct: 67 KELEAKKDKTKVTLEL----RLARAGLDWSRQKY--------RVVSAITAVVLALAAFLV 114
Query: 138 YDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESG 197
++ L VG GF P+ W+ ++R + P+A+D+++ + SG
Sbjct: 115 SHNVIVAGLALFVG--------GFGLPAWWLKRRQKRRVEAFIEELPNAMDVVVRGLRSG 166
Query: 198 ISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQA 257
I + LR +A + PL E +T+ + + A Y R + V +
Sbjct: 167 IPLGDCLRMIARE---AKEPLRSEFRVTMESQALGLSMSDAILRMYERVPVTEVNFFSIV 223
Query: 258 LIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGP 317
+ + G ++ ++L L R + M + +A S+ K + II LP V+ G
Sbjct: 224 IGIQQKAGGNLSEALGNLSRVLRERKKMAGKIQAMSMEAKASAA-IIGALP---FVVGGG 279
Query: 318 AILSIID 324
LS D
Sbjct: 280 TYLSSPD 286
>gi|320009994|gb|ADW04844.1| Type II secretion system F domain protein [Streptomyces
flavogriseus ATCC 33331]
Length = 270
Score = 44.7 bits (104), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 34/149 (22%), Positives = 61/149 (40%), Gaps = 6/149 (4%)
Query: 179 IKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVA 238
I R P DLL C+ +G +A V E + G P+ E + T A + A
Sbjct: 125 IARQLPITADLLASCLSAGAGPREAAEAVGESVAG---PVGERLARTAAVILLGGEPDEA 181
Query: 239 FENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKL 298
+ F ++ + + ++ G + + L E R+ER A +A G +
Sbjct: 182 WRRF---GELPGAAPLARCMARASSTGAPAAEPVSGLADEIRAERASAAVARAQRAGVLI 238
Query: 299 TVPMIIFFLPVLILVIIGPAILSIIDTMK 327
T P+ + FLP + V + P ++ + +
Sbjct: 239 TAPVGLCFLPAFLAVGVAPVVIGLATGLS 267
>gi|317124421|ref|YP_004098533.1| type II secretion system F domain [Intrasporangium calvum DSM
43043]
gi|315588509|gb|ADU47806.1| Type II secretion system F domain [Intrasporangium calvum DSM
43043]
Length = 314
Score = 44.7 bits (104), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 68/155 (43%), Gaps = 9/155 (5%)
Query: 168 ISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIA 227
+S ++R+ + +P +LL + V +G AL RV G+ L++E+ +A
Sbjct: 159 LSRAARRREQRMLAEFPTVAELLALAVSAGEGATGALERVCRLSDGE---LADELRRCLA 215
Query: 228 ELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSER---L 284
+ N A + +RT + + ++ + GT + D LR + R + L
Sbjct: 216 DARAGANLPTALQGLADRTGLPSLSRFVDGIVVAVERGTPLADVLRAQAQDVREDGRRVL 275
Query: 285 MEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAI 319
ME K + + VP++ LPV +L I P +
Sbjct: 276 MEQGGKREIV---MMVPVVFLILPVTVLFAIYPGL 307
>gi|84494453|ref|ZP_00993572.1| hypothetical protein JNB_06644 [Janibacter sp. HTCC2649]
gi|84383946|gb|EAP99826.1| hypothetical protein JNB_06644 [Janibacter sp. HTCC2649]
Length = 310
Score = 44.7 bits (104), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 69/162 (42%), Gaps = 9/162 (5%)
Query: 160 GFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLS 219
G A V++S +R+ + +P +LL + V +G AL RV G+ LS
Sbjct: 147 GVVAADVFLSRRANQREERMLAEFPTVAELLALAVGAGEGAVGALERVCRLSRGE---LS 203
Query: 220 EEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSET 279
+E+ + + + VA +RT + + ++ + GT + D LR +
Sbjct: 204 DELRRCLGDARAGASLPVALHGLADRTGLMSLTRFVDGIVIAVERGTPLADVLRAQAQDV 263
Query: 280 RSE---RLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPA 318
R E +MEA K + +P++ LP+ +L I P
Sbjct: 264 REEGRRAIMEAGGKKEI---AMMIPVVFLVLPITVLFAIFPG 302
>gi|157961841|ref|YP_001501875.1| type II secretion system protein [Shewanella pealeana ATCC 700345]
gi|157846841|gb|ABV87340.1| type II secretion system protein [Shewanella pealeana ATCC 700345]
Length = 325
Score = 44.7 bits (104), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 50/94 (53%), Gaps = 4/94 (4%)
Query: 174 KRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLP 233
KR I+ ++PDALD+L +++G S A++ V E++ G PL++E L A +++
Sbjct: 145 KRMDKIEESFPDALDVLRRALQAGYSFSDAIKLVTEEMDG---PLAKEFSLMFANINYSK 201
Query: 234 NRQVAFENFYNRT-QMDCVRNATQALIQSDRYGT 266
+ + A F R + + A+ ++Q + G
Sbjct: 202 DTKRALLGFIERVPSVSAMAFASAVMVQKETGGN 235
>gi|254293218|ref|YP_003059241.1| type II secretion system protein [Hirschia baltica ATCC 49814]
gi|254041749|gb|ACT58544.1| type II secretion system protein [Hirschia baltica ATCC 49814]
Length = 331
Score = 44.7 bits (104), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 61/282 (21%), Positives = 128/282 (45%), Gaps = 36/282 (12%)
Query: 35 SLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILV 94
++G+G K K+ +V+ ++R++Q+ +DS + LR R++K ++ +
Sbjct: 42 AVGAGSGGK--KNSSVDATLMRRKQM----QDSMKT-LRERENKRRKDTRGR-------- 86
Query: 95 DENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVI 154
I +KL AG+ E ++ V+ V ++ + GI ++ G L+ +
Sbjct: 87 --TIKDKLAQAGWTIEPAM--FWVLSAVTGVV--VAGITFVLGQTPLI----------IA 130
Query: 155 LIGYVGFCAPSVWISNL-VQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGG 213
G+ G W+ + + RQ + + D +D+++ V+SG+ + + LR +A +
Sbjct: 131 GAGFAGALGLPRWVVGMGISARQKKFTQQFSDGIDVIVRGVKSGLPLIECLRIIASE--- 187
Query: 214 QSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLR 273
PL E I + + + N YNR + V + + G ++ ++L
Sbjct: 188 SPAPLGTEFKRVIDAIQMGTTVEKSLSNMYNRMPLPEVNFFGIVIGIQQQSGGNLSEALG 247
Query: 274 VLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVII 315
L RS +++ + KA S K + MII LP+ +++++
Sbjct: 248 NLSEVLRSRKMLAEKVKALSSEAKASA-MIIGALPIAVMILV 288
>gi|167624198|ref|YP_001674492.1| type II secretion system protein [Shewanella halifaxensis HAW-EB4]
gi|167354220|gb|ABZ76833.1| type II secretion system protein [Shewanella halifaxensis HAW-EB4]
Length = 325
Score = 44.7 bits (104), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 50/94 (53%), Gaps = 4/94 (4%)
Query: 174 KRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLP 233
KR I+ ++PDALD+L +++G S A++ V E++ G PL++E L A +++
Sbjct: 145 KRMEKIEESFPDALDVLRRALQAGYSFSDAIKLVTEEMEG---PLAKEFSLMFANINYSK 201
Query: 234 NRQVAFENFYNRT-QMDCVRNATQALIQSDRYGT 266
+ + A F R + + A+ ++Q + G
Sbjct: 202 DTKRALLGFIERVPSVSAMAFASAVMVQKETGGN 235
>gi|218887823|ref|YP_002437144.1| type II secretion system protein [Desulfovibrio vulgaris str.
'Miyazaki F']
gi|218758777|gb|ACL09676.1| type II secretion system protein [Desulfovibrio vulgaris str.
'Miyazaki F']
Length = 321
Score = 44.7 bits (104), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 45/95 (47%), Gaps = 9/95 (9%)
Query: 156 IGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQS 215
+GY P +W+ R +R PDALDL+ +++G + +Q +R VA++
Sbjct: 127 LGYT----PFLWVQRKRNARMGRFQRQLPDALDLIARALKAGHAFNQGMRMVADEFAD-- 180
Query: 216 VPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDC 250
P+ E T+ E++F A N R +DC
Sbjct: 181 -PIGPEFQKTLDEINFGIPADAALYNLTRR--VDC 212
>gi|15887569|ref|NP_353250.1| components of type IV pilus [Agrobacterium tumefaciens str. C58]
gi|15155106|gb|AAK86035.1| components of type IV pilus [Agrobacterium tumefaciens str. C58]
Length = 334
Score = 44.7 bits (104), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 83/348 (23%), Positives = 146/348 (41%), Gaps = 77/348 (22%)
Query: 10 DATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSAS 69
D T + +A+ A+S +L YA + + E+EK+ S R +++ + + D +
Sbjct: 2 DPTIVLLAVLVAISAGALAYAFLFQQI---EVEKKTTS--------RFKRVQAAETDHTN 50
Query: 70 -----------SRLRTRDSKSLRNFVKKLNLKAILVDE-NIVNKLRAAGFRSEYSLNILL 117
S+ R SLR+ KK N KA ++ +KL AG LL
Sbjct: 51 IKAARDRVQELSKRRKSMQDSLRDMEKKQNEKAKKAKNVSLRDKLVQAGLTISVRQFHLL 110
Query: 118 VVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQS 177
F+ L I+G L P + ++ +G P ++ L+++RQ
Sbjct: 111 SAGAAACAAFISL----IYGLSLLTALP-------IAVVAALGL--PRWVLAFLLKRRQK 157
Query: 178 SIKRAWPDALDLLLICVESGISIDQALRRVAED------------IGGQSVPLS-----E 220
+P+ALD++ ++SG+ ++ A+R +A D + Q V + E
Sbjct: 158 KFLEEFPNALDVMCRSIKSGLPLNDAVRLIASDGQEPVKTEFQRVVDAQQVGIGIPQGIE 217
Query: 221 EMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETR 280
M+LT +P +V+F + Q N ++AL + RVL R
Sbjct: 218 RMMLT------MPLFEVSFFSIVINIQAQAGGNLSEAL----------SNLSRVL----R 257
Query: 281 SERLMEAEKKAASLGPKLTVPMIIFFLPVLILVII---GPAILSIIDT 325
R M A+ A S+ K + +II LP ++++++ P LSI+ T
Sbjct: 258 DRRKMRAKVNALSMEAKASA-VIIGALPFIVMLLVHFTSPDYLSILFT 304
>gi|330953057|gb|EGH53317.1| type II secretion system protein [Pseudomonas syringae Cit 7]
Length = 294
Score = 44.3 bits (103), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 52/238 (21%), Positives = 108/238 (45%), Gaps = 6/238 (2%)
Query: 86 KLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYP 145
++ ++I +D L G+R ++ ++ VP+ +++ I+ + K ++ P
Sbjct: 56 RIGQRSISLDSETQILLNRIGWRRASKRSLFAACQVGVPVGLMVMVILGQLLFFKGVQQP 115
Query: 146 FQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALR 205
+ + +G VG+ P ++ ++RQ + + LL I ESG++++QALR
Sbjct: 116 L---IAPIFALG-VGYLLPKRILAAAARRRQKQVVVEISTFIPLLRILFESGMAVEQALR 171
Query: 206 RVAEDIGGQSVP-LSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRY 264
++ + G +P LSEE+ + + + +D + + L Q
Sbjct: 172 VLSNE-GKDLLPVLSEEIRVVLVRVDSGLELGEELRKTAALLAVDELSDTCVILNQLIHQ 230
Query: 265 GTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
G SL +L RL ++ + L K++V M++F P L++V+ GP ++I
Sbjct: 231 GGGALKSLLMLKQLIDDRRLTRLQEYISKLSAKMSVVMMVFLFPALLIVLAGPGFMAI 288
>gi|269955831|ref|YP_003325620.1| type II secretion system protein [Xylanimonas cellulosilytica DSM
15894]
gi|269304512|gb|ACZ30062.1| type II secretion system protein [Xylanimonas cellulosilytica DSM
15894]
Length = 312
Score = 44.3 bits (103), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 41/173 (23%), Positives = 82/173 (47%), Gaps = 9/173 (5%)
Query: 153 VILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIG 212
V++ G GF A ++ + +R+ + +P +LL + V +G + AL RVA
Sbjct: 142 VLISGACGFAACDQVLTRQISQREERMVAEFPTIAELLALAVTAGEAPISALERVAATAR 201
Query: 213 GQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSL 272
G+ LS E+ T+A++ +A + +RT + + + + + GT + + L
Sbjct: 202 GE---LSVEIRRTLADVRAGAPIALALTDMADRTGLPSLTRFAEGVAVALERGTPLAEVL 258
Query: 273 RVL---VSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
R V E+ LMEA + + + VP++ LP+ ++ I P++ ++
Sbjct: 259 RAQAQDVRESGRRALMEAGGRKEVV---MLVPVVFLILPITVVFAIYPSLATL 308
>gi|85707699|ref|ZP_01038765.1| hypothetical protein NAP1_00650 [Erythrobacter sp. NAP1]
gi|85689233|gb|EAQ29236.1| hypothetical protein NAP1_00650 [Erythrobacter sp. NAP1]
Length = 323
Score = 44.3 bits (103), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 61/253 (24%), Positives = 108/253 (42%), Gaps = 30/253 (11%)
Query: 72 LRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRL--------VV 123
LR R S+S V+ KAI + +K+ +G R+E L VRL V
Sbjct: 40 LRYRHSESTDAKVESQFKKAIAARKPKAHKVAGSGSRTE-----ALEVRLDRTGKGWTVS 94
Query: 124 PIIFLILGIIWIFGYDKLLEY--PF-QLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIK 180
+++ LGII + G ++ PF L GA +VG P + +S ++KR +
Sbjct: 95 QYLYVTLGIILVVGVLLYIQTGAPFLSLAAGA-----FVGLGLPHLVVSFFIKKRTNDFN 149
Query: 181 RAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFE 240
+ D ++LL+ + SG+ + + L VA+++ G P+ E + + + + +
Sbjct: 150 AKFADGIELLVRGLRSGLPVTETLAVVAQEVPG---PVGLEFKGIVERIKIGKTMEDSLQ 206
Query: 241 NFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKL-- 298
+R + T L G ++ ++L L R M+ + KA S K
Sbjct: 207 ETADRLGIPEFNFFTITLAIQRETGGNLAETLSNLADVLRKRTQMKLKIKAMSSESKASA 266
Query: 299 ----TVPMIIFFL 307
++P I+F L
Sbjct: 267 YIVGSLPFIVFGL 279
>gi|159039934|ref|YP_001539187.1| type II secretion system protein [Salinispora arenicola CNS-205]
gi|157918769|gb|ABW00197.1| type II secretion system protein [Salinispora arenicola CNS-205]
Length = 255
Score = 44.3 bits (103), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 67/142 (47%), Gaps = 10/142 (7%)
Query: 184 PDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLT--IAELSFLPNRQVAFEN 241
P A DLL + +G +D+++ VAE + G PL+E + L + L P E
Sbjct: 118 PLAADLLASVMRAGAPVDRSVLAVAEALDG---PLAERLALVGRLLRLGAEPA-----EA 169
Query: 242 FYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVP 301
+ + A ++S G ++ +L L + R++R E E KA G + +P
Sbjct: 170 WSTLAAVPGAERLIAAALRSAASGATLAGALTRLADDLRADRATEVEAKARRSGVLIVLP 229
Query: 302 MIIFFLPVLILVIIGPAILSII 323
+ + FLP IL + P I++++
Sbjct: 230 LGLCFLPAFILAGLMPVIVAVL 251
>gi|258651872|ref|YP_003201028.1| type II secretion system protein [Nakamurella multipartita DSM
44233]
gi|258555097|gb|ACV78039.1| type II secretion system protein [Nakamurella multipartita DSM
44233]
Length = 311
Score = 44.3 bits (103), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 38/159 (23%), Positives = 74/159 (46%), Gaps = 9/159 (5%)
Query: 167 WISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTI 226
W++ V K++ I +P ++L + V +G S AL RV + G PL ++ +
Sbjct: 154 WLTQAVSKQEEEIIAEFPVIAEMLALSVTAGESPTGALDRVTKLAHG---PLVSQLSGVL 210
Query: 227 AELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRS---ER 283
AE A + +RT+++ + + + GT + D LR ++ R+ +
Sbjct: 211 AETRAGTPFLTALTHLRDRTRLEPLARFLDGMAVAIERGTPLADVLRAQAADVRALSKRQ 270
Query: 284 LMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
L+E+ + + VP++ LP+ IL + P +L+I
Sbjct: 271 LLESGGRKEI---AMMVPVVFLVLPITILFALYPGLLAI 306
>gi|218675030|ref|ZP_03524699.1| putative tadC pilus assembly protein [Rhizobium etli GR56]
Length = 76
Score = 44.3 bits (103), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 41/67 (61%)
Query: 260 QSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAI 319
QS+ GTS+ +LRV R R++ AE+KA +L K+ +P+ F PV +++++ P +
Sbjct: 3 QSEELGTSVTQTLRVYSKGMRDLRIVRAEEKANALPVKMLLPLGAFLFPVSLIIVLVPIV 62
Query: 320 LSIIDTM 326
+ ++ +
Sbjct: 63 IRVVSLL 69
>gi|239814536|ref|YP_002943446.1| type II secretion system protein [Variovorax paradoxus S110]
gi|239801113|gb|ACS18180.1| type II secretion system protein [Variovorax paradoxus S110]
Length = 330
Score = 43.9 bits (102), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 64/137 (46%), Gaps = 8/137 (5%)
Query: 131 GIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLL 190
G+++ F L P + +L+ G P +++++ +R + ++R PDALDL+
Sbjct: 111 GMLFFFAMTSLANQPAWI----ALLVSAAGAAVPLLYLNHRRSRRLAHLERQLPDALDLV 166
Query: 191 LICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDC 250
+ +G S +++ + +++ S P++ E + E+ F + Q A N R +
Sbjct: 167 TRALRAGHSFASSVQMIGDEM---SEPIAGEFRMVADEVGFGVSLQQALTNMSERVPLTD 223
Query: 251 VRN-ATQALIQSDRYGT 266
+R LIQ D G
Sbjct: 224 LRYFVVSVLIQRDSGGN 240
>gi|157375502|ref|YP_001474102.1| Flp pilus assembly protein TadB [Shewanella sediminis HAW-EB3]
gi|157317876|gb|ABV36974.1| conserved hypothetical Flp pilus assembly protein TadB [Shewanella
sediminis HAW-EB3]
Length = 325
Score = 43.9 bits (102), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 64/270 (23%), Positives = 123/270 (45%), Gaps = 33/270 (12%)
Query: 55 LRKQQITSLQKDSASSRLRT---RDSKSLRNFVKKLN-----LKAILVDENIVNKLRAAG 106
L ++++ L K+S S T R SK ++KLN L+ I EN+ +L A
Sbjct: 37 LVRKRLKQLSKNSDDSEFETSLLRKSK-----LQKLNRFGRALEKIEFIENLSYRLELAD 91
Query: 107 FRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSV 166
++ LL LV II +L W F + ++ + V AV L+ + +
Sbjct: 92 YKMMGHHFFLLA--LVTSIITGLL--TWQFTREPII----TVFVMAVTLMLF------HI 137
Query: 167 WISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTI 226
+S KR +I+ ++PDALD++ +++G S A++ E++ G P+++E L
Sbjct: 138 KLSRDTNKRMDAIEASFPDALDVVRRALQAGYSFSDAIKLATEELEG---PIAKEFKLMF 194
Query: 227 AELSFLPNRQVAFENFYNRT-QMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLM 285
A +++ + + A F R + + A+ ++Q + G ++ +++ L R
Sbjct: 195 ANINYTKDVKRALLGFIERVPSISAMAFASAVMVQKET-GGNLAENIESLSRVIRERFTF 253
Query: 286 EAEKKAASLGPKLTVPMIIFFLPVLILVII 315
K S +L+ I+ LP ++ +I
Sbjct: 254 RRRVKTLSAEGRLSA-WILILLPFVLFAVI 282
>gi|332158910|ref|YP_004424189.1| hypothetical protein PNA2_1270 [Pyrococcus sp. NA2]
gi|331034373|gb|AEC52185.1| hypothetical protein PNA2_1270 [Pyrococcus sp. NA2]
Length = 355
Score = 43.9 bits (102), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 48/210 (22%), Positives = 94/210 (44%), Gaps = 16/210 (7%)
Query: 109 SEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWI 168
E + ++L V ++ I+ LGII D L VG ++ Y+ F SVW
Sbjct: 117 KEKYVALMLAVGIIAGIMGFFLGIITEMSMDMNLALGI---VGFLLGFVYMRFYPKSVW- 172
Query: 169 SNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAE 228
++R ++R+ P L + + +GI + + + VA+ G +SEE + I E
Sbjct: 173 ----RRRVEEVERSLPYVLRHMASLLSAGIGLAETMVSVAKSDYGV---ISEEFRMVIQE 225
Query: 229 LSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSE---RLM 285
+ + + A F + + D V + ++++ ++G ++ D L + E E +LM
Sbjct: 226 MHKGSSFEDALTKFEEKMKSDMVSRVVKQILRALKFGGNLSDILYKMADEFSFEYRIKLM 285
Query: 286 EAEKKAASLGPKLTVPMIIFFLPVLILVII 315
+ +K G + +P L++V+I
Sbjct: 286 DYVQKIN--GISFVYMFMTVVMPTLLIVVI 313
>gi|261402163|ref|YP_003246387.1| Type II secretion system F domain protein [Methanocaldococcus
vulcanius M7]
gi|261369156|gb|ACX71905.1| Type II secretion system F domain protein [Methanocaldococcus
vulcanius M7]
Length = 301
Score = 43.9 bits (102), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 71/144 (49%), Gaps = 23/144 (15%)
Query: 151 GAVILIG-YVG--FCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRV 207
G +I I YVG PS+ N ++ +++I P AL ++++ +ESG SI++AL V
Sbjct: 58 GMIIAIALYVGALISLPSILYENKMETLENNI----PQALYIMILTLESGRSINEALEEV 113
Query: 208 AEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFE-------NFYNRTQMDCVRNATQALIQ 260
++ + E + L + ++++FE N Y+ ++ + +I+
Sbjct: 114 VKN------NIKEVSNVFKKVLYLMEKQKISFEEAMTIVSNLYDS---KVLKMLARIMIE 164
Query: 261 SDRYGTSIGDSLRVLVSETRSERL 284
+ +YG ++ DSLRVL RL
Sbjct: 165 NRKYGGNLADSLRVLAKTLEDFRL 188
>gi|325291655|ref|YP_004277519.1| components of type IV pilus [Agrobacterium sp. H13-3]
gi|325059508|gb|ADY63199.1| components of type IV pilus [Agrobacterium sp. H13-3]
Length = 334
Score = 43.9 bits (102), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 84/357 (23%), Positives = 151/357 (42%), Gaps = 84/357 (23%)
Query: 9 FDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSA 68
D T L +A A+S +L YA + + E+EK+ S R +++ + + D A
Sbjct: 1 MDPTILLLAALVAISAGALAYAFLFQQI---EVEKKTTS--------RVKRVKAAETDHA 49
Query: 69 S-----------SRLRTRDSKSLRNFVKKLNLKAILVDE-NIVNKLRAAGFR-SEYSLNI 115
+ + R SLR KK + KA + KL AG + S ++
Sbjct: 50 NIKAARDRVQELGKRRKSMQDSLREMEKKQSEKAKKAKNVGLREKLVQAGLQLSVRQFHL 109
Query: 116 LLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKR 175
L ++ +L +G L+ L +GAV+ +G P + ++++R
Sbjct: 110 LSAGAAAFSVVIALL-----YGLSLLIA----LLIGAVVALGL-----PRWVLGFILKRR 155
Query: 176 QSSIKRAWPDALDLLLICVESGISIDQALRRVAED------------IGGQSVPLS---- 219
Q +P+ALD++ ++SG+ ++ A+R +A D + Q V +
Sbjct: 156 QKKFLEEFPNALDVMCRSIKSGLPLNDAVRLIASDGQEPVKTEFQRVVDAQQVGIGIPQG 215
Query: 220 -EEMLLTIA--ELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLV 276
E M+LT+ E+SF F N IQ+ + G ++ ++L L
Sbjct: 216 IERMMLTVPLFEVSF-------FSTVIN--------------IQA-QAGGNLSEALSNLS 253
Query: 277 SETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVII---GPAILSIIDT-MKDH 329
R R M A+ A S+ K + +II LP ++++++ P LS++ T M+ H
Sbjct: 254 KVLRERRKMRAKVNALSMEAKASA-VIIGALPFIVMLLVHFTSPDYLSVLFTDMRGH 309
>gi|288919650|ref|ZP_06413978.1| type II secretion system protein [Frankia sp. EUN1f]
gi|288348939|gb|EFC83188.1| type II secretion system protein [Frankia sp. EUN1f]
Length = 367
Score = 43.9 bits (102), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 40/165 (24%), Positives = 72/165 (43%), Gaps = 9/165 (5%)
Query: 160 GFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLS 219
G A W++ +++R+ + +P +LL + V +G S AL RV+ G+ L
Sbjct: 203 GILARDWWLTRAIREREDRMLMEFPTVAELLALAVTAGESAIGALERVSRLTRGE---LG 259
Query: 220 EEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLR---VLV 276
E+ L +A+ A E RT + + + + GT + D LR V V
Sbjct: 260 TELRLALADARAGATLVQALEGIAARTSLPPLTRFVDGMAVAIERGTPLADVLRAQAVDV 319
Query: 277 SETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILS 321
E +L+EA + + +P++ LP ++ PA++S
Sbjct: 320 REAGKRQLLEAGGRKEI---AMMIPVVFLILPTTVIFAFYPALVS 361
>gi|227494922|ref|ZP_03925238.1| type II secretion system protein [Actinomyces coleocanis DSM 15436]
gi|226831374|gb|EEH63757.1| type II secretion system protein [Actinomyces coleocanis DSM 15436]
Length = 293
Score = 43.9 bits (102), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 46/199 (23%), Positives = 86/199 (43%), Gaps = 13/199 (6%)
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAW---- 183
L++G+ IFG L V +LI + F +V L+ R ++ +
Sbjct: 102 LLIGLAIIFGKAG------NLTVLQWLLITSISFTLITVGWDKLLTYRVNTFSKKLNSQV 155
Query: 184 PDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFY 243
DA +LL + + +G S+ AL RVA+ G Q E L IA+ + + A +
Sbjct: 156 ADAAELLALVISAGESVPGALNRVAKVSGPQMASQLESALTQIAQGTAVSK---ALKTLA 212
Query: 244 NRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMI 303
N+T ++ L+ G+S+ + LR + R E L + + +P++
Sbjct: 213 NKTPSVQLQRLLNTLVSGMERGSSLSEILRHQAKDLREESLRNLLESGGRKEIAMLIPVV 272
Query: 304 IFFLPVLILVIIGPAILSI 322
LPV ++ + P ++++
Sbjct: 273 FLILPVTVIFALYPGLIAL 291
>gi|312199821|ref|YP_004019882.1| type II secretion system F [Frankia sp. EuI1c]
gi|311231157|gb|ADP84012.1| Type II secretion system F domain protein [Frankia sp. EuI1c]
Length = 323
Score = 43.9 bits (102), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 69/158 (43%), Gaps = 9/158 (5%)
Query: 167 WISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTI 226
W++ ++ R+ + +P +LL + V +G S AL RVA G+ L E+ L +
Sbjct: 166 WLTRAIRAREDRMLMEFPTIAELLALAVTAGESPVGALERVARLTHGE---LGYELRLAL 222
Query: 227 AELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLR---VLVSETRSER 283
A+ A E RT + + + + GT + D LR V V E +
Sbjct: 223 ADARAGATLVQALEGIATRTTLGSLARFVDGMAVAIERGTPLADVLRAQAVDVREAGRRQ 282
Query: 284 LMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILS 321
L+E+ + + VP++ LP ++ PA++S
Sbjct: 283 LLESGGRKEI---AMMVPVVFLVLPTTVIFAFYPALVS 317
>gi|209886534|ref|YP_002290391.1| type II secretion system protein [Oligotropha carboxidovorans OM5]
gi|209874730|gb|ACI94526.1| type II secretion system protein [Oligotropha carboxidovorans OM5]
Length = 325
Score = 43.5 bits (101), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 75/318 (23%), Positives = 139/318 (43%), Gaps = 34/318 (10%)
Query: 14 LAVAITTAVSIFSLIYAVVIPSL-GSGELEKRMKSVAVEREILRKQQITSLQKDSASSRL 72
LA+A +AV++ L + + P+L G + EKR S+A I R+ + + S R
Sbjct: 6 LAIAFMSAVTLGGLAWVFLYPALSGERQAEKRRASLARPENIARRVE----RNPQRSRRE 61
Query: 73 RTRDS-KSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPI-IFLIL 130
+ D+ K + N K+ A V NI +L AG ++ ++ V+ I FL+
Sbjct: 62 QVEDTLKDVENRAKQ----AKKVPLNI--RLEQAGV--NWTKRQFMIGSAVLGIATFLLF 113
Query: 131 GIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKR-QSSIKRAWPDALDL 189
I+ + F + + G GF P W+ N ++KR + A PDA+D+
Sbjct: 114 YIV---------DANF---LATIAFAGAAGFGLPR-WVLNFLKKRREKKFLDALPDAVDV 160
Query: 190 LLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMD 249
++ V++G+ + +L+ V D PL E I S A Y R +
Sbjct: 161 IVRGVKAGLPLFDSLKVVVND---SPEPLRSEFRAIIETQSIGMPLGEACMRLYERMPLP 217
Query: 250 CVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPV 309
+ + G ++ ++L L R + M+A+ +A S+ K + +I P
Sbjct: 218 EANFFGIVVGIQMKSGGNLSEALGNLSKVLRDRKKMKAKIQAMSMEAKASAGIIGSLPPA 277
Query: 310 LILVI--IGPAILSIIDT 325
+++++ + P +S++ T
Sbjct: 278 VMMIVYFMSPDYISLLWT 295
>gi|283769335|ref|ZP_06342234.1| type II secretion system F domain protein [Bulleidia extructa
W1219]
gi|283103992|gb|EFC05376.1| type II secretion system F domain protein [Bulleidia extructa
W1219]
Length = 294
Score = 43.5 bits (101), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 69/143 (48%), Gaps = 4/143 (2%)
Query: 173 QKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFL 232
+KR + + P+AL ++ C+ SG + AL RV+ED+ P+SEE+ I E+++
Sbjct: 113 KKRLALFNKQLPEALVIIGNCLRSGFTFRHALARVSEDLPN---PISEELKRVIREVNYG 169
Query: 233 PNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAA 292
+ + +RT + A+ R G ++ + + V+ET ++R+ +
Sbjct: 170 RKLEESLGELASRTNSAELEMINSAVTIQQRSGGNLAEIVEK-VTETINDRINIRNQIRV 228
Query: 293 SLGPKLTVPMIIFFLPVLILVII 315
M+I LPV +L+I+
Sbjct: 229 LTTQGRYSGMLIGLLPVFLLIIL 251
>gi|313126950|ref|YP_004037220.1| archaeal flagella assembly protein j [Halogeometricum borinquense
DSM 11551]
gi|312293315|gb|ADQ67775.1| archaeal flagella assembly protein J [Halogeometricum borinquense
DSM 11551]
Length = 719
Score = 43.5 bits (101), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 58/112 (51%), Gaps = 5/112 (4%)
Query: 170 NLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAE-DIGGQSVPLSEEMLLTIAE 228
L ++R +I+R PD LD + E+G+++ ++L R+A+ D+G P+SEE+ T +
Sbjct: 489 ELRKRRLKAIEREMPDFLDRMASVNEAGVTVVKSLHRLAQSDLG----PISEELRRTWRD 544
Query: 229 LSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETR 280
+ + + + A F R Q+ V A ++ + + LR+ +E +
Sbjct: 545 IQWGASLRNALRGFDRRAQVPMVSRAVTLIMNAVAASGEVAPVLRIAANEAQ 596
>gi|330959999|gb|EGH60259.1| hypothetical protein PMA4326_15689 [Pseudomonas syringae pv.
maculicola str. ES4326]
Length = 294
Score = 43.1 bits (100), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 51/238 (21%), Positives = 105/238 (44%), Gaps = 6/238 (2%)
Query: 86 KLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYP 145
++ ++I +D L G+R ++ ++ VP+ + + + + K +E P
Sbjct: 56 RVGQRSISLDSETQILLNRIGWRRASKRSLFAACQIGVPVGLMCVVALVQLLFFKNIEQP 115
Query: 146 FQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALR 205
+ V +G VG+ P ++ ++RQ + + LL I ESG++++QALR
Sbjct: 116 L---IAPVFALG-VGYLLPKRVLAVAAKRRQKQVVLEISTFIPLLRILFESGMAVEQALR 171
Query: 206 RVAEDIGGQSVP-LSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRY 264
++ + G + +P LS+E+ + + + +D + + L Q
Sbjct: 172 VLSSE-GKELLPVLSDEIRVVLTRVDSGLELGEELRKTAALLAVDELSDTCVILNQLIHQ 230
Query: 265 GTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
G SL L RL ++ + L K+++ M+ F P L++V+ GP ++I
Sbjct: 231 GGGALKSLLTLKQLIDDRRLTRLQEYISKLSAKMSMVMMAFLFPALLIVLAGPGFIAI 288
>gi|51245381|ref|YP_065265.1| TadB [Desulfotalea psychrophila LSv54]
gi|50876418|emb|CAG36258.1| related to TadB [Desulfotalea psychrophila LSv54]
Length = 317
Score = 43.1 bits (100), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 69/139 (49%), Gaps = 4/139 (2%)
Query: 173 QKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFL 232
++R+ + + +PDALDL+ +++G SI +L+ V+E++ P++EE + + E++F
Sbjct: 136 RQRRINFEEHFPDALDLMGYAMKAGHSIMASLKMVSEEMPA---PINEEFAIVVEEINFG 192
Query: 233 PNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAA 292
+ NF R +R ++I G ++ + L + + R + +A
Sbjct: 193 KSIDSTLRNFAKRVDSTELRYFVTSVIVQRETGGNLVEILEKISAIIRKKFRFRERVRAL 252
Query: 293 SLGPKLTVPMIIFFLPVLI 311
S KL+ +I+ LP I
Sbjct: 253 SAEGKLSA-IILVALPFCI 270
>gi|225376647|ref|ZP_03753868.1| hypothetical protein ROSEINA2194_02289 [Roseburia inulinivorans DSM
16841]
gi|225211530|gb|EEG93884.1| hypothetical protein ROSEINA2194_02289 [Roseburia inulinivorans DSM
16841]
Length = 344
Score = 43.1 bits (100), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 48/212 (22%), Positives = 87/212 (41%), Gaps = 31/212 (14%)
Query: 105 AGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAP 164
AG ++N+ + L+ +IF+I G L+GY+ P
Sbjct: 155 AGIAIGLAMNMGMRSFLIGIVIFVIFG-----------------------LLGYI----P 187
Query: 165 SVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLL 224
++ +V KRQ I+R +P + + + +G+ + QA R + G L +EM
Sbjct: 188 YDSVNAVVSKRQEDIEREFPQVISKMTLLTVAGMEVSQAWRLASASGEG---TLYKEMKR 244
Query: 225 TIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTS-IGDSLRVLVSETRSER 283
+ + + A+ F +R A+IQ+ G S I R L E+ E
Sbjct: 245 VLVDFDNNVSPVEAYSKFISRCSNTYTTKLATAIIQNISKGNSEIVTLFRQLNDESWLEH 304
Query: 284 LMEAEKKAASLGPKLTVPMIIFFLPVLILVII 315
A + + KL +P ++ F ++IL+I+
Sbjct: 305 KHNARRMGEKIQSKLLLPTMLMFGGIIILIIV 336
>gi|325109818|ref|YP_004270886.1| type II secretion system F domain protein [Planctomyces
brasiliensis DSM 5305]
gi|324970086|gb|ADY60864.1| Type II secretion system F domain protein [Planctomyces
brasiliensis DSM 5305]
Length = 319
Score = 43.1 bits (100), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 35/149 (23%), Positives = 63/149 (42%), Gaps = 3/149 (2%)
Query: 133 IWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLI 192
+W G LL P L + FC PSV+ +R ++++ P+ DL+
Sbjct: 101 LWSAGLVALLVIPLHLGTAWSAGLSLAAFCIPSVYAVQRRNQRINTLRDQLPETFDLMSR 160
Query: 193 CVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVR 252
+ESG +I A + V+ GG P+++E + + ++ + RT + ++
Sbjct: 161 AIESGQTISGAFQLVSTQCGG---PIAKEFQHCCQQQNLGLPYEITLRDLARRTGVMELQ 217
Query: 253 NATQALIQSDRYGTSIGDSLRVLVSETRS 281
ALI + G D L+ L R+
Sbjct: 218 MFAVALIVQRQAGGDPSDVLKNLAEAVRN 246
>gi|296134294|ref|YP_003641541.1| Type II secretion system F domain protein [Thermincola sp. JR]
gi|296032872|gb|ADG83640.1| Type II secretion system F domain protein [Thermincola potens JR]
Length = 320
Score = 43.1 bits (100), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 39/167 (23%), Positives = 75/167 (44%), Gaps = 7/167 (4%)
Query: 160 GFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLS 219
GF P + QKR + DAL ++ + +G S QA+ V++++ P+S
Sbjct: 126 GFIVPKYVVKAAKQKRVARFNAQIGDALIIMANSLRAGFSFLQAMELVSKEM---PAPIS 182
Query: 220 EEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSET 279
E + E++ + A +N NR + + + A++ + G ++ L +
Sbjct: 183 VEFARALREMNLGTATEEALQNLCNRVESEDLDLVITAVLIQRQVGGNLSQILEGISHTI 242
Query: 280 RSERLMEAEKKAASLGPKLTVPMIIFFLPV---LILVIIGPAILSII 323
R ++ E K + +++ MI+ LPV LIL +I P + I+
Sbjct: 243 RERVRIKGEIKTLTAQGRIS-GMIVGALPVGMGLILAVINPGYIGIL 288
>gi|218132581|ref|ZP_03461385.1| hypothetical protein BACPEC_00440 [Bacteroides pectinophilus ATCC
43243]
gi|217992307|gb|EEC58310.1| hypothetical protein BACPEC_00440 [Bacteroides pectinophilus ATCC
43243]
Length = 444
Score = 42.7 bits (99), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 77/163 (47%), Gaps = 18/163 (11%)
Query: 172 VQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGG--QSVP------LSEEML 223
V+ R ++ + + + L + +G+S+ +A ++A D + +P + EEM+
Sbjct: 284 VRLRNKQLQYDYTEIVSKLTLLTGAGMSVRRAWEKIALDYNNKMKDMPKEKYHAVYEEMM 343
Query: 224 LTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSER 283
T+ ++ + +A+ F R + R L Q+ R GT L VL+ E SE
Sbjct: 344 TTLRQMQSGMSENIAYAEFGRRCGIKEYRKLGTLLEQNVRKGTR---GLSVLL-EQESEE 399
Query: 284 LMEAEKKAA-----SLGPKLTVPMIIFFLPVLILVIIGPAILS 321
E K A G KL +PMI+ V+++V++ PA++S
Sbjct: 400 AFEQRKNLAKQLGEEAGTKLLLPMILMLAVVMVIVMV-PAMMS 441
>gi|134291850|ref|YP_001115619.1| type II secretion system protein [Burkholderia vietnamiensis G4]
gi|134135039|gb|ABO59364.1| type II secretion system protein [Burkholderia vietnamiensis G4]
Length = 325
Score = 42.7 bits (99), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 61/130 (46%), Gaps = 6/130 (4%)
Query: 152 AVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDI 211
AV+ + C P+++++ ++R ++R PD D++ + SG S AL V E+
Sbjct: 123 AVLPVALFAGCIPTLYVTRHRRRRMLKLERQLPDVCDMIARALRSGHSFTSALGMVGEEF 182
Query: 212 GGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQA-LIQSDRYGT--SI 268
P+S E +T E+++ + A N R + +R A LIQ + G +
Sbjct: 183 ---PEPMSGEFRITFDEINYGVSLHDALVNLATRVPANDLRYFVIAVLIQRETGGNLAEL 239
Query: 269 GDSLRVLVSE 278
DS+ LV E
Sbjct: 240 LDSIAALVRE 249
>gi|297627214|ref|YP_003688977.1| hypothetical protein PFREUD_20690 [Propionibacterium freudenreichii
subsp. shermanii CIRM-BIA1]
gi|296922979|emb|CBL57561.1| Hypothetical membrane protein [Propionibacterium freudenreichii
subsp. shermanii CIRM-BIA1]
Length = 247
Score = 42.7 bits (99), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 71/156 (45%), Gaps = 10/156 (6%)
Query: 169 SNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTI-A 227
S + R+ ++ P+ LDL+ E+G LRR A ++ + S +L + A
Sbjct: 94 SGATRARREALLGQQPEVLDLIAAAQEAG----SPLRRAAGEVAALAPEPSASVLREVDA 149
Query: 228 ELSFLPNRQVAFENFYNRTQMDCVRNAT-QALIQSDRYGTSIGDSLRVLVSETRSERLME 286
L + A+++ + D V +T + L +S R G ++ D++ + + TR
Sbjct: 150 HLRVGFSEAEAWQSLAD----DPVWGSTARDLARSARTGEAVADTIHLHATRTREAHRDH 205
Query: 287 AEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
KKA ++ K PM+ FLP IL + P + I
Sbjct: 206 LNKKARTVAVKSVGPMMACFLPAFILAGVVPIFVGI 241
>gi|187921508|ref|YP_001890540.1| type II secretion system protein [Burkholderia phytofirmans PsJN]
gi|187719946|gb|ACD21169.1| type II secretion system protein [Burkholderia phytofirmans PsJN]
Length = 282
Score = 42.7 bits (99), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 45/194 (23%), Positives = 83/194 (42%), Gaps = 29/194 (14%)
Query: 99 VNKLRAAGFRSEYSLNILLVVRLVVPII-FLILGIIWIFGYDKLLEYPFQLRVGAVILIG 157
VN+ RAA + + + + PII FL+ G I I LL P
Sbjct: 51 VNRQRAAAWSMVFMIGL--------PIIAFLLTGSILI----ALLAVP------------ 86
Query: 158 YVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVP 217
+ P +++ + +KR ++++ PDAL ++ + +G S AL V + + P
Sbjct: 87 -IAMTLPKKYLARMRKKRIGTLEKQLPDALLMMSGALRAGASFPSALEAVVHE---TTPP 142
Query: 218 LSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVS 277
+S+E L + E+ + +A N R + T A+ + G ++ ++L +
Sbjct: 143 ISQEFDLLMREIRLGIDMDIAMRNVEKRIPIPDFLMMTAAVTIAREVGGNLAEALESVAR 202
Query: 278 ETRSERLMEAEKKA 291
R + ME + KA
Sbjct: 203 TLREKLQMEGKIKA 216
>gi|312136703|ref|YP_004004040.1| type ii secretion system f domain protein [Methanothermus fervidus
DSM 2088]
gi|311224422|gb|ADP77278.1| Type II secretion system F domain protein [Methanothermus fervidus
DSM 2088]
Length = 355
Score = 42.7 bits (99), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 65/149 (43%), Gaps = 11/149 (7%)
Query: 175 RQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPN 234
R I R P AL + + +G+ A++ VA G LSEE T+ E+ + +
Sbjct: 174 RADEISRELPYALRQMATELRAGLGFHDAMKSVATSGYGA---LSEEFARTLEEIKYGES 230
Query: 235 RQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASL 294
A N R ++ A Q +++S G + +L ++ + E M K
Sbjct: 231 TTRALMNLSVRVPSPGLKRAIQQIVRSLESGGDVAKALEIIAEDIAYELRM----KFRDY 286
Query: 295 GPKLTVPMIIFFLPVLILVIIGPAILSII 323
KL M+I+ + + I+GPA+L I+
Sbjct: 287 SQKLNSFMMIY----MFIGIVGPAVLPIL 311
>gi|298345274|ref|YP_003717961.1| type II secretion system protein [Mobiluncus curtisii ATCC 43063]
gi|298235335|gb|ADI66467.1| type II secretion system protein [Mobiluncus curtisii ATCC 43063]
Length = 303
Score = 42.7 bits (99), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 40/172 (23%), Positives = 81/172 (47%), Gaps = 21/172 (12%)
Query: 160 GFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAE---DIGGQSV 216
G P ++ ++RQ S+ + PD ++LL + V +G + AL RV+ D+ GQ +
Sbjct: 142 GLLVPDYRLTGAARRRQLSLNQELPDVIELLALAVGAGEPLYGALHRVSARCTDVAGQEL 201
Query: 217 PLSEEMLLTIAEL--SFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRV 274
E +L A+ S P+ A R + + + A++ + G+ + LR
Sbjct: 202 ----EKILAAADNGDSLAPSLTAA----RARNDSEILAHLIDAIVSALERGSPLAGVLRS 253
Query: 275 LVSET----RSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
V+++ R++ L E KK + VP++ LP+ ++ + P ++++
Sbjct: 254 QVADSRAVARTQLLTEGGKKEV----LMMVPVVFLILPLTVVFALYPGLVAL 301
>gi|166033071|ref|ZP_02235900.1| hypothetical protein DORFOR_02793 [Dorea formicigenerans ATCC
27755]
gi|166027428|gb|EDR46185.1| hypothetical protein DORFOR_02793 [Dorea formicigenerans ATCC
27755]
Length = 397
Score = 42.7 bits (99), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 36/156 (23%), Positives = 68/156 (43%), Gaps = 7/156 (4%)
Query: 173 QKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQ-----SVPLSEEMLLTIA 227
Q RQ + +P+ + L + + +G+++ +A ++ D + + EEM T
Sbjct: 241 QARQKQMCLDYPEVISKLTLLLGAGMTVRKAWIKIVNDYDSRIKQQGKRAVYEEMKYTCR 300
Query: 228 ELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGT-SIGDSLRVLVSETRSERLME 286
++ +E F R L Q+ R GT + D LR+ ++ ER
Sbjct: 301 QMDGGVPEAECYEKFGRRCGTQEYMRFGALLSQNLRKGTKGLNDLLRLEAIQSFEERKAR 360
Query: 287 AEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
A + G KL +PM + VL++V++ PA ++
Sbjct: 361 ARRLGEEAGTKLLLPMFLMLAEVLVIVVV-PAFFTV 395
>gi|302037433|ref|YP_003797755.1| pilus assembly protein TadB [Candidatus Nitrospira defluvii]
gi|300605497|emb|CBK41830.1| Pilus assembly protein TadB [Candidatus Nitrospira defluvii]
Length = 313
Score = 42.7 bits (99), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 46/185 (24%), Positives = 85/185 (45%), Gaps = 9/185 (4%)
Query: 137 GYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVES 196
G L + L + A+++I VG A ++S R++ +R PDALD++ + +
Sbjct: 96 GASVALAFVDALGMPAMLVIATVGSVATPAYLSWRAAARRAHFQRQLPDALDMMARSLRA 155
Query: 197 GISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVR-NAT 255
G + ++ VAE+ P+ E + E++F + A + R + T
Sbjct: 156 GHAFLAGMKIVAEEF---PAPIGAEFRSVVEEVAFGVSVTEALQRLTARVDSPALNFFVT 212
Query: 256 QALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVL---IL 312
LIQ + G ++ + L + TR + A+ +A S +L+ +I+F LP +L
Sbjct: 213 SVLIQRES-GGNLAEILNTISRMTRKRFELAAKVRAVSAEGRLSA-VILFALPFALGGLL 270
Query: 313 VIIGP 317
+II P
Sbjct: 271 LIINP 275
>gi|184200572|ref|YP_001854779.1| hypothetical protein KRH_09260 [Kocuria rhizophila DC2201]
gi|183580802|dbj|BAG29273.1| hypothetical membrane protein [Kocuria rhizophila DC2201]
Length = 314
Score = 42.7 bits (99), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 81/182 (44%), Gaps = 17/182 (9%)
Query: 152 AVILIGYVGFCAPSVWISN-----LVQKRQSSIKRAWPDALDLLLICVESGISIDQALRR 206
A++ +G V VW+ N +++R+ + +P +L+ + V +G S AL R
Sbjct: 138 AIVAVGVVLGAGCGVWLRNNLLSRSIRRREKLMVAEFPAIAELMALAVGAGESTVGALER 197
Query: 207 VAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGT 266
V G+ LS E +A+ A ++F RT + + ++ + GT
Sbjct: 198 VCRVAEGE---LSGEFRAVLAQTRAGSGLTTALQDFSARTDVVALGRFVDGIVVAIERGT 254
Query: 267 SIGDSLRVLVSETRSER---LME-AEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
+ + LR + R LME A KK ++ VP++ F LP+ + + P L++
Sbjct: 255 PLAEVLRAQAQDVRDHDKRVLMEVAGKKEIAM----LVPVVFFILPLSVAFAVFPG-LAV 309
Query: 323 ID 324
+D
Sbjct: 310 LD 311
>gi|304315118|ref|YP_003850265.1| hypothetical protein MTBMA_c13650 [Methanothermobacter marburgensis
str. Marburg]
gi|302588577|gb|ADL58952.1| putative membrane protein [Methanothermobacter marburgensis str.
Marburg]
Length = 313
Score = 42.7 bits (99), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 41/175 (23%), Positives = 83/175 (47%), Gaps = 15/175 (8%)
Query: 153 VILIGYVGFCAPSV----WISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVA 208
VIL VGF PS+ +I ++++R +I+++ PD L + + +G+ ++ AL V+
Sbjct: 69 VILAVIVGFFMPSILLGAYIFVMMERRVDAIEQSTPDFLRQIASLLRAGVGLESALEDVS 128
Query: 209 EDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSI 268
+ G PL +E+ + E+ A + R + + + +++ R G S+
Sbjct: 129 KQGEG---PLYDELKRAVIEIKIGRTFDDAILSMSERLKSQNLDRTFRMILEGRRAGGSL 185
Query: 269 GDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSII 323
D + + + R+ ++ E+KA V M + FL ++ +I P L +I
Sbjct: 186 SDVIETVAEDLRAVLALKRERKA-------NVMMSVMFL-IVAAIIAAPFALGMI 232
>gi|86739494|ref|YP_479894.1| type II secretion system protein [Frankia sp. CcI3]
gi|86566356|gb|ABD10165.1| type II secretion system protein [Frankia sp. CcI3]
Length = 316
Score = 42.7 bits (99), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 75/174 (43%), Gaps = 10/174 (5%)
Query: 152 AVILIGYVG-FCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAED 210
A+I+ G G A W+S + +R+ + +P +LL + V +G S AL RV+
Sbjct: 143 ALIVAGTAGGVVARDYWLSRAISEREDRMLLEFPTIAELLALAVTAGESAIGALERVSRL 202
Query: 211 IGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGD 270
G+ L E+ L +A+ A E RT + + + + GT + D
Sbjct: 203 THGE---LGRELRLALADARAGATLVQALEGIAARTALAPLVRFVDGMAVAIERGTPLAD 259
Query: 271 SLRVLVSETRS---ERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILS 321
LR + R +L+EA + + +P++ LP ++ PA++S
Sbjct: 260 ILRAQAVDAREAGKRQLLEAGGRKEI---AMMIPVVFLVLPTTVIFAFYPALVS 310
>gi|315655694|ref|ZP_07908592.1| type II secretion system protein [Mobiluncus curtisii ATCC 51333]
gi|315489758|gb|EFU79385.1| type II secretion system protein [Mobiluncus curtisii ATCC 51333]
Length = 303
Score = 42.7 bits (99), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 61/257 (23%), Positives = 114/257 (44%), Gaps = 42/257 (16%)
Query: 77 SKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIF 136
S S + ++L+L + D V + R + R SL +L VV L II +
Sbjct: 76 SPSKESVERRLDLAGLPKD---VCEFRRSQLRWAASLGMLAVV----------LSIIGFW 122
Query: 137 GYDKLLEYPFQLRVGAVILIGYV--GFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICV 194
G + L P V+L +V G P ++ ++RQ + + PD ++LL + V
Sbjct: 123 G--RTLPIPGAF----VMLTCFVLAGLLVPDYRLTGAARRRQLRLNQELPDVIELLALAV 176
Query: 195 ESGISIDQALRRVAE---DIGGQSVPLSEEMLLTIAEL--SFLPNRQVAFENFYNRTQMD 249
+G + AL RV+ D+ GQ + E +L A+ S P+ A R +
Sbjct: 177 GAGEPLYGALHRVSARCTDVAGQEL----EKILAAADNGDSLAPSLTAA----RARNDSE 228
Query: 250 CVRNATQALIQSDRYGTSIGDSLRVLVSET----RSERLMEAEKKAASLGPKLTVPMIIF 305
+ + A++ + G+ + LR V+++ R++ L E KK + VP++
Sbjct: 229 ILAHLIDAIVSALERGSPLASVLRSQVADSRAVARTQLLTEGGKKEV----LMMVPVVFL 284
Query: 306 FLPVLILVIIGPAILSI 322
LP+ ++ + P ++++
Sbjct: 285 ILPLTVVFAMYPGLVAL 301
>gi|152981972|ref|YP_001355002.1| Flp pilus assembly protein TadC [Janthinobacterium sp. Marseille]
gi|151282049|gb|ABR90459.1| Flp pilus assembly protein TadC [Janthinobacterium sp. Marseille]
Length = 317
Score = 42.7 bits (99), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 68/131 (51%), Gaps = 2/131 (1%)
Query: 197 GISIDQALRRVAEDIGGQSVP-LSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNAT 255
G+SIDQ+L V E+ S+P L +E+ + + R+ + F + + + +
Sbjct: 181 GMSIDQSLH-VVENEFSTSLPVLGKELQIAAQQYQNGRTREQSLRRFSSLFENEDMSAVA 239
Query: 256 QALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVII 315
+ ++Q DRYG ++ L+ R +R ++ ++K L K+T M++ LP L+++
Sbjct: 240 RLIVQVDRYGGAVQQPLQQFSDRLREQRKLDMKEKVGKLTVKMTGVMVLALLPALLIITG 299
Query: 316 GPAILSIIDTM 326
G L+II T+
Sbjct: 300 GAGFLAIIRTL 310
>gi|308176986|ref|YP_003916392.1| type II secretion system protein F [Arthrobacter arilaitensis
Re117]
gi|307744449|emb|CBT75421.1| putative type II secretion system protein F [Arthrobacter
arilaitensis Re117]
Length = 313
Score = 42.4 bits (98), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 32/163 (19%), Positives = 68/163 (41%), Gaps = 3/163 (1%)
Query: 157 GYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSV 216
G +G+ W+ + +R I +P ++L + V +G S A+ R++ G
Sbjct: 147 GIIGYAMRGWWLGEQINRRARKILTQFPTVAEVLALTVGAGESTTGAIERISRICHGV-- 204
Query: 217 PLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLV 276
+ +E T+ ++ A ++ +R Q+ + A++ + GT + LR
Sbjct: 205 -IGDEFTKTLNDIHAGTPMVQAMQHMSDRMQVGAMTRFVDAIVVATERGTPLAQVLRDQA 263
Query: 277 SETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAI 319
+ R E + A + VP++ LP+ I+ + P +
Sbjct: 264 QDVRDASKRELMEVAGKREISMLVPVVFGILPLTIVFAVFPGL 306
>gi|148261009|ref|YP_001235136.1| type II secretion system protein [Acidiphilium cryptum JF-5]
gi|326404409|ref|YP_004284491.1| putative type II secretion system protein [Acidiphilium multivorum
AIU301]
gi|146402690|gb|ABQ31217.1| type II secretion system protein [Acidiphilium cryptum JF-5]
gi|325051271|dbj|BAJ81609.1| putative type II secretion system protein [Acidiphilium multivorum
AIU301]
Length = 319
Score = 42.4 bits (98), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 70/153 (45%), Gaps = 7/153 (4%)
Query: 174 KRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLP 233
+R +++ +PDAL ++ CV GI + +ALR V++D+ P S E +++
Sbjct: 138 RRATALLNQFPDALATIVRCVRVGIPVQEALRVVSQDM---PAPTSREFGRIADQVAIGT 194
Query: 234 NRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAAS 293
++A +R + A+ RYG + +L L R M+A A +
Sbjct: 195 PLELALRQMADRAHLAEYGFFATAISLQARYGGGLAQTLEGLAEVIRKRVAMKARGYALA 254
Query: 294 LGPKLTVPMIIFFLPV---LILVIIGPAILSII 323
+ T +I+ +P+ L + +I PA L ++
Sbjct: 255 SEAR-TSALILGIIPLVAALAIEVIQPAYLRVL 286
>gi|309777429|ref|ZP_07672387.1| conserved hypothetical protein [Erysipelotrichaceae bacterium
3_1_53]
gi|308914825|gb|EFP60607.1| conserved hypothetical protein [Erysipelotrichaceae bacterium
3_1_53]
Length = 201
Score = 42.4 bits (98), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 37/165 (22%), Positives = 80/165 (48%), Gaps = 8/165 (4%)
Query: 154 ILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGG 213
IL+ ++ F + IS++++KR I R P + + + V +G+ + +A +VA+
Sbjct: 34 ILLEFLAFYYFQMQISDVMKKRDMEISRDLPSIISKITLLVNAGMVLREAWAQVAQT--- 90
Query: 214 QSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLR 273
L +EM + +++ + A+ +F R Q VR + Q+ G D +
Sbjct: 91 GDTTLYKEMQRAVEDMNNGMSEVDAYMDFSQRCQSAKVRKFISTVEQNVSKGNK--DLVA 148
Query: 274 VLVSETR---SERLMEAEKKAASLGPKLTVPMIIFFLPVLILVII 315
L +++ +E+ ++ + K+ +P+ I F+ +LI+VI+
Sbjct: 149 YLKEQSQIAWTEKKEYVRQQGETASSKMLIPIGIMFVGILIMVIV 193
>gi|302864942|ref|YP_003833579.1| Type II secretion system F domain-containing protein
[Micromonospora aurantiaca ATCC 27029]
gi|302567801|gb|ADL44003.1| Type II secretion system F domain [Micromonospora aurantiaca ATCC
27029]
Length = 242
Score = 42.0 bits (97), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 60/125 (48%), Gaps = 6/125 (4%)
Query: 200 IDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALI 259
+D+++ VAE +GG PL++ + L + A+ + T + V A +
Sbjct: 121 VDRSVLAVAEALGG---PLADRLGRVGRTLRLGGSPGEAWAHLEGVTGAEPV---AAAAV 174
Query: 260 QSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAI 319
+S G ++ +L L + R+ER AE A G + +P+ + FLP IL + P I
Sbjct: 175 RSSNSGAALARALTRLADDLRAERSTSAEAAARRAGVLIVLPLGLCFLPAFILAGLVPVI 234
Query: 320 LSIID 324
++++
Sbjct: 235 VAVLG 239
>gi|319943384|ref|ZP_08017666.1| type II secretion system protein F domain protein [Lautropia
mirabilis ATCC 51599]
gi|319743199|gb|EFV95604.1| type II secretion system protein F domain protein [Lautropia
mirabilis ATCC 51599]
Length = 291
Score = 42.0 bits (97), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 57/123 (46%), Gaps = 3/123 (2%)
Query: 164 PSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEML 223
PS+ I +L +R+ R PDA+ L+ V +G S+ ALR++A ++ P +E
Sbjct: 101 PSLLIRHLGAQRRKLFARQLPDAMMLIAGAVRAGASMTLALRQMASEL---PAPGGQEFE 157
Query: 224 LTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSER 283
L + EL A N R D +R A+ ++ G ++ ++L L R +
Sbjct: 158 LMLRELRLGVTLDDALLNLERRMGCDDLRLFGAAVRIANESGGNLAETLERLADTIRKKM 217
Query: 284 LME 286
+E
Sbjct: 218 ALE 220
>gi|163733538|ref|ZP_02140981.1| type II secretion system protein, putative [Roseobacter litoralis
Och 149]
gi|161393326|gb|EDQ17652.1| type II secretion system protein, putative [Roseobacter litoralis
Och 149]
Length = 320
Score = 42.0 bits (97), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 46/205 (22%), Positives = 92/205 (44%), Gaps = 7/205 (3%)
Query: 125 IIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWP 184
+I +L ++ G E +R+ ++ IG +G A W+S+ KR + I+ P
Sbjct: 94 MIMGVLAVVAFLGLSVGTESSLPVRI--MMSIG-IGVGAVYFWVSSKANKRLAMIEEQLP 150
Query: 185 DALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYN 244
DA++L++ + G A++ V++++ PL+ EM + E ++ + A +
Sbjct: 151 DAVELMVRSLRVGHPFSSAVQIVSKEV---QDPLASEMGVIADESAYGRDVGDALKEMAE 207
Query: 245 RTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMII 304
R M +R A+ G ++ + L L R+ + KA + K + +
Sbjct: 208 RLDMQDLRFLAVAVNIQQTSGGNLAEILAGLAKVIRARFRLFRRVKAITAEAKWSGKFLS 267
Query: 305 FFLPVLILVIIGPAILSIIDTMKDH 329
F PV+ L++I + D ++DH
Sbjct: 268 AF-PVVALIVINVGDPNYYDAVRDH 291
>gi|116671217|ref|YP_832150.1| type II secretion system protein [Arthrobacter sp. FB24]
gi|116611326|gb|ABK04050.1| type II secretion system protein [Arthrobacter sp. FB24]
Length = 313
Score = 42.0 bits (97), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 35/163 (21%), Positives = 68/163 (41%), Gaps = 3/163 (1%)
Query: 160 GFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLS 219
GF + + +++R+ + +P +L+ + V +G S AL RV G+ L+
Sbjct: 150 GFLFRDYCLGSQIKRREKLMMAEFPSLAELMALAVSAGESATGALDRVCRSSHGE---LA 206
Query: 220 EEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSET 279
E L + E A + F RT + + +I + GT + D LR +
Sbjct: 207 REFELVLGETRAGKPLVEALQRFSARTDLGPLVRFVDGIIVAVERGTPLADVLRAQAQDV 266
Query: 280 RSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
R + + A + VP++ LP+ ++ + P + +I
Sbjct: 267 RDTAKRDLMESAGKKEIAMMVPLVFGVLPLTVIFAVFPGLAAI 309
>gi|91772494|ref|YP_565186.1| type II secretion system protein [Methanococcoides burtonii DSM
6242]
gi|91711509|gb|ABE51436.1| type II secretion system protein F domain [Methanococcoides
burtonii DSM 6242]
Length = 716
Score = 42.0 bits (97), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 39/189 (20%), Positives = 85/189 (44%), Gaps = 28/189 (14%)
Query: 114 NILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVIL----IGYVG-------FC 162
N L + + +PI L+L I PF +G+++ IG++ F
Sbjct: 436 NPLYSLAVTIPIAILVLVI------------PFWSNIGSLVTTAQKIGFIDDYIVLALFI 483
Query: 163 A--PSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSE 220
A P ++ +++ ++R +PD L L E+G+++ +++ +A+ G L
Sbjct: 484 AIVPMALFHEIMSRKKKHLERNFPDFLKKLASTNETGMTLRDSIKLMAKSKSGH---LGN 540
Query: 221 EMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETR 280
E+ + A++S+ N + F NR + + + + +++ +G+ L V +
Sbjct: 541 EIRMIWADISWGMNVNDSLIRFANRLRTQVIARSLTLITKANESSGDVGEVLLVAARDAA 600
Query: 281 SERLMEAEK 289
SE+ M+ E+
Sbjct: 601 SEQSMKRER 609
>gi|254506705|ref|ZP_05118845.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus 16]
gi|219550286|gb|EED27271.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus 16]
Length = 322
Score = 41.6 bits (96), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 61/291 (20%), Positives = 126/291 (43%), Gaps = 31/291 (10%)
Query: 10 DATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSAS 69
DAT + + AV S A+++P+ GS K++ E + ++ SL ++
Sbjct: 4 DATLFYILLFFAVVFIS--QALILPAAGSKAKHKQLSQRLKESQAKLDEEARSLLQEHYM 61
Query: 70 SRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPII-FL 128
L D R VK + + ++ + +G+ ++SL L V L++ + FL
Sbjct: 62 KSLTPMD----RRLVK------VPLFSSLKKTIELSGY--DWSLGQTLAVTLILSVCAFL 109
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
I+ LL PF + + A + I ++ + W++ + R +S + P+ALD
Sbjct: 110 IV---------LLLGQPFYIGLAASVGIWFILY----FWLNKRISDRLASFEEQLPEALD 156
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
++ +++G + QA V ++ P+ E T L+F + ++A RT
Sbjct: 157 IMRRMLQAGQPVTQAFNEVGNEMPD---PIGTEFKNTFNLLNFGYDMRMAIMQMAERTPT 213
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLT 299
+ + A++ G ++ ++L + RS ++ + K S +L+
Sbjct: 214 VSMLAFSSAVLLQKETGGNLSENLEKVSKVLRSRFKLQRKIKTLSAESRLS 264
>gi|114705451|ref|ZP_01438359.1| probable pilus assembly protein [Fulvimarina pelagi HTCC2506]
gi|114540236|gb|EAU43356.1| probable pilus assembly protein [Fulvimarina pelagi HTCC2506]
Length = 335
Score = 41.6 bits (96), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 85/179 (47%), Gaps = 21/179 (11%)
Query: 146 FQLRVGAVILIGYV-GFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQAL 204
F L + A + I V G P ++SN +KR + ++P A+DL++ V++G+ ++ L
Sbjct: 126 FGLPILATLGIAVVAGLGLPRAFLSNRRKKRINDFSNSFPTAIDLIVRGVKAGLPLNDTL 185
Query: 205 RRVAEDIGG------QSVPLSEEMLLTIAELSFLPNRQVAF--ENFYNRTQMDCVRNATQ 256
R V D+ Q V +++M +T+ + +QV NF+ A
Sbjct: 186 RTVVSDVPDPVSSEFQKVVEAQQMGVTLGDACDRLYKQVPLPETNFF----------AIV 235
Query: 257 ALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVII 315
IQS + G ++ ++L L R + M + +A S+ K + II +PVL+ +I
Sbjct: 236 IAIQS-QAGGNLSEALGNLSRVLRERKKMRQKIQAVSMEAKASAS-IIGSIPVLVASMI 292
>gi|87199098|ref|YP_496355.1| type II secretion system protein [Novosphingobium aromaticivorans
DSM 12444]
gi|87134779|gb|ABD25521.1| type II secretion system protein [Novosphingobium aromaticivorans
DSM 12444]
Length = 324
Score = 41.6 bits (96), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 79/177 (44%), Gaps = 18/177 (10%)
Query: 148 LRVGAVIL-IG---YVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQA 203
LR GA +L +G ++G P + + + KR + PDALDLL+ + SG+ + +
Sbjct: 114 LRTGAPLLALGSGIFIGGGLPHMLVGRAINKRIDNFVTRLPDALDLLVRGLRSGLPVTET 173
Query: 204 LRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMD-----CVRNATQAL 258
L VA ++ G P+ EE L + + A ++ +R + C+ A Q
Sbjct: 174 LGVVAAELPG---PVGEEFKLVTDRIKVGRTMEEALQDTADRLNLPEFNFFCITLAIQ-- 228
Query: 259 IQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVII 315
G ++ ++L L R M+ + KA S K + I+ LP ++ +I
Sbjct: 229 ---RETGGNLAETLSNLSDVLRKRAQMKLKIKAMSSESKASA-YIVGALPFIVFALI 281
>gi|315501227|ref|YP_004080114.1| type ii secretion system f domain protein [Micromonospora sp. L5]
gi|315407846|gb|ADU05963.1| Type II secretion system F domain protein [Micromonospora sp. L5]
Length = 242
Score = 41.6 bits (96), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 60/125 (48%), Gaps = 6/125 (4%)
Query: 200 IDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALI 259
+D+++ VAE +GG PL++ + L + A+ + T + V A +
Sbjct: 121 VDRSVLAVAEALGG---PLADRLGRVGRTLRLGGSPGEAWAHLEGVTGAEPV---VAAAV 174
Query: 260 QSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAI 319
+S G ++ +L L + R+ER AE A G + +P+ + FLP IL + P I
Sbjct: 175 RSSNSGAALARALTRLADDLRAERSTSAEAAARRAGVLIVLPLGLCFLPAFILAGLVPVI 234
Query: 320 LSIID 324
++++
Sbjct: 235 VAVLG 239
>gi|260439392|ref|ZP_05793208.1| putative bacterial type II secretion system protein F domain
protein [Butyrivibrio crossotus DSM 2876]
gi|292808188|gb|EFF67393.1| putative bacterial type II secretion system protein F domain
protein [Butyrivibrio crossotus DSM 2876]
Length = 388
Score = 41.6 bits (96), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 84/195 (43%), Gaps = 12/195 (6%)
Query: 132 IIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLL 191
+I+ K+L Y F + + LI Y P + +KR + +P+ + L
Sbjct: 200 VIFYEKKKKILPYFFAMFLIIAFLIYYYKIYNPKIT----KEKRDKLLIADYPELVSKLS 255
Query: 192 ICVESGISIDQALRRVAEDI--GGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMD 249
+ + +G+S A ++ ED G++ P E + + +S A+ F R +
Sbjct: 256 LLMGAGMSTYNAFIKITEDYRKTGKTKPAYELLSECLNRISSGITETDAYMEFGKRCNVM 315
Query: 250 CVRNATQALIQSDRYGTSIGDSLRVLVSETR---SERLMEAEKKAASLGPKLTVPMIIFF 306
C L Q+ GT + ++L ET +R A+K G KL +PM +
Sbjct: 316 CYIKLGNLLAQNISKGTD--NIFQLLKEETEKAFEDRKALAKKLGEEAGTKLLLPMTMML 373
Query: 307 LPVLILVIIGPAILS 321
VLI+++I PA +S
Sbjct: 374 SVVLIIIVI-PAFMS 387
>gi|255324192|ref|ZP_05365314.1| putative membrane protein [Corynebacterium tuberculostearicum
SK141]
gi|255298708|gb|EET78003.1| putative membrane protein [Corynebacterium tuberculostearicum
SK141]
Length = 198
Score = 41.6 bits (96), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 31/137 (22%), Positives = 66/137 (48%), Gaps = 8/137 (5%)
Query: 187 LDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLP-NRQVAFENFYNR 245
++L C+ +G+S+ A VA Q+ +E+ T+A L + Q A+ + +
Sbjct: 64 VELFAACLAAGLSVHGATTAVARTADAQT----KELWETVAALLGVGVPAQSAWGHMKSH 119
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
++ + Q +I S + G +I + + + R+E A +A G + +P+ +
Sbjct: 120 AGLE---DLAQLVIMSGQSGATIAAGCQRICTSLRAEASAHATAQAERAGVFIALPLAVC 176
Query: 306 FLPVLILVIIGPAILSI 322
FLP I++ + P ++S+
Sbjct: 177 FLPAFIVLGLAPVVISL 193
>gi|329847257|ref|ZP_08262285.1| bacterial type II secretion system protein F domain protein
[Asticcacaulis biprosthecum C19]
gi|328842320|gb|EGF91889.1| bacterial type II secretion system protein F domain protein
[Asticcacaulis biprosthecum C19]
Length = 337
Score = 41.6 bits (96), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 38/180 (21%), Positives = 79/180 (43%), Gaps = 17/180 (9%)
Query: 115 ILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGY-VGFCAPSVWISNLVQ 173
+L VV VVP++ L + F LR+ + G+ + + AP + +
Sbjct: 110 VLGVVAFVVPLVLLG-------------KMDFMLRLLVALGAGFALSYGAPRWVLGMMAT 156
Query: 174 KRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLP 233
R +P+A+D+L+ ++SG+ + L+ ++++ PL E L + +
Sbjct: 157 GRLKKFTEEFPNAMDILVRGIKSGLPVHDGLKIISKE---SPAPLGPEFLRLVENVGVGM 213
Query: 234 NRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAAS 293
+ + A E R +R T + + G ++ ++L L + R+ ++M + KA S
Sbjct: 214 SVEGALEKMSERIPSPELRFFTIVIAIQAKTGGNLAEALNNLSTVLRARKMMREKIKALS 273
>gi|77919351|ref|YP_357166.1| Flp pilus assembly protein TadB [Pelobacter carbinolicus DSM 2380]
gi|77545434|gb|ABA88996.1| Flp pilus assembly protein TadB [Pelobacter carbinolicus DSM 2380]
Length = 325
Score = 41.6 bits (96), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 71/162 (43%), Gaps = 15/162 (9%)
Query: 140 KLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGIS 199
K + Y F + + ILI FC P ++ + + P+ALDLL + SG +
Sbjct: 116 KFIPYTF-ITIALAILI----FCLPFAYLKLAENTYHARFQDQLPEALDLLARALRSGHA 170
Query: 200 IDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVR-NATQAL 258
+ L VA ++ P+S E + E++ Q AFEN R +R A +
Sbjct: 171 MTSGLEMVAAEM---DPPISSEFGAAVDEINLGLTFQEAFENLCERVPSTDLRFFAISVI 227
Query: 259 IQSDRYGT--SIGDSLRVLVSE----TRSERLMEAEKKAASL 294
IQ + G I DS+ L+ E R + + AE + +++
Sbjct: 228 IQRETGGNVAEILDSISRLIRERIQFKRQVKALTAEGRLSAM 269
>gi|311741045|ref|ZP_07714870.1| membrane protein [Corynebacterium pseudogenitalium ATCC 33035]
gi|311303847|gb|EFQ79925.1| membrane protein [Corynebacterium pseudogenitalium ATCC 33035]
Length = 198
Score = 41.6 bits (96), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 31/137 (22%), Positives = 64/137 (46%), Gaps = 8/137 (5%)
Query: 187 LDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLP-NRQVAFENFYNR 245
++L C+ +G+S+ A VA Q+ +E+ T+A L + Q A+ +
Sbjct: 64 VELFAACLAAGLSVHGATTAVARTADAQT----KELWETVAALLGVGVPAQSAWGHMKGH 119
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
++ + Q +I S + G +I + + R+E A +A G + +P+ +
Sbjct: 120 AGLE---DLAQLVIMSGQSGATIAAGCHRICTSLRAEASAHATAQAERAGVFIALPLAVC 176
Query: 306 FLPVLILVIIGPAILSI 322
FLP I++ + P ++S+
Sbjct: 177 FLPAFIVLGLAPVVISL 193
>gi|110679392|ref|YP_682399.1| type II secretion system protein, putative [Roseobacter
denitrificans OCh 114]
gi|109455508|gb|ABG31713.1| type II secretion system protein, putative [Roseobacter
denitrificans OCh 114]
Length = 320
Score = 41.6 bits (96), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 39/171 (22%), Positives = 77/171 (45%), Gaps = 4/171 (2%)
Query: 159 VGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPL 218
+G A W+S+ KR + I+ PDA++L++ + G A++ V++++ PL
Sbjct: 125 IGVGAVYFWVSSKANKRLAMIEEQLPDAVELMVRSLRVGHPFSSAVQIVSKEV---QDPL 181
Query: 219 SEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSE 278
+ EM + E ++ + A + R M +R A+ G ++ + L L
Sbjct: 182 ASEMGVIADESAYGRDVGDALKEMAERLDMQDLRFLAVAVNIQQTSGGNLAEILAGLAKV 241
Query: 279 TRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMKDH 329
R+ + KA + K + + F PV+ L++I + D ++DH
Sbjct: 242 IRARFRLFRRVKAITAEAKWSGKFLSAF-PVVALIVINVGDPNYYDAVRDH 291
>gi|239629080|ref|ZP_04672111.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
gi|239519226|gb|EEQ59092.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
Length = 418
Score = 41.6 bits (96), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 76/157 (48%), Gaps = 9/157 (5%)
Query: 174 KRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDI-----GGQSVP--LSEEMLLTI 226
KR+ + + + L L+I + +G+SI A +VA D G+ P +EM T
Sbjct: 262 KRKHQLLLDYSEVLSRLIIFLGAGMSIRTAWDKVAFDYQKLVDDGKQKPRYAYQEMYETS 321
Query: 227 AELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGT-SIGDSLRVLVSETRSERLM 285
++ AF +F R + + L Q+ + G+ ++ D+L+V ++E +R
Sbjct: 322 CQMRGGVPEGRAFMDFGRRCGLQQYMKLSSLLEQNRKNGSKNLRDTLKVEMAEAFEQRKH 381
Query: 286 EAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
+A + G KL +P+ + L V+++VI PA++
Sbjct: 382 QARRLGEEAGTKLLLPLFM-MLSVVMVVIAVPALMEF 417
>gi|289192868|ref|YP_003458809.1| Type II secretion system F domain protein [Methanocaldococcus sp.
FS406-22]
gi|288939318|gb|ADC70073.1| Type II secretion system F domain protein [Methanocaldococcus sp.
FS406-22]
Length = 299
Score = 41.2 bits (95), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 67/130 (51%), Gaps = 21/130 (16%)
Query: 153 VILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIG 212
VI +G F PS+ N ++ +++I P AL ++++ +ESG SI++AL V +
Sbjct: 62 VIYVGAALFI-PSILYENKIETLENNI----PQALYIMILALESGRSINEALLEVVKSNI 116
Query: 213 GQSVPLSEEMLLTIAELSFLPNRQVAFE-------NFYNRTQMDCVRNATQALIQSDRYG 265
+ + ++L + N++++FE N Y+ +R + +I++ +YG
Sbjct: 117 KEVSDIFRKVLY------LMENQKLSFEESMTIVSNLYDS---KVLRMLARIMIENRKYG 167
Query: 266 TSIGDSLRVL 275
+ DSL++L
Sbjct: 168 GDLADSLKIL 177
>gi|292491526|ref|YP_003526965.1| type II secretion system protein [Nitrosococcus halophilus Nc4]
gi|291580121|gb|ADE14578.1| type II secretion system protein [Nitrosococcus halophilus Nc4]
Length = 323
Score = 41.2 bits (95), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 32/136 (23%), Positives = 60/136 (44%), Gaps = 14/136 (10%)
Query: 132 IIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLL 191
++W+ LL + L+ +V F P + I KR + P+ALD++
Sbjct: 111 LVWVLARSPLLGF----------LVAFVSFIFPILRIRIERDKRIGKFEEQLPEALDIMS 160
Query: 192 ICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRT-QMDC 250
+++G + L +E++ PL++E T A++++ N + AF + R M
Sbjct: 161 RAMKAGYPFVETLHVASEEMRD---PLAKEFRTTFADINYGMNIKTAFLSLLQRVPSMSL 217
Query: 251 VRNATQALIQSDRYGT 266
+ T L+Q D G
Sbjct: 218 MAVVTGVLVQRDTGGN 233
>gi|302381752|ref|YP_003817575.1| type II secretion system F domain protein [Brevundimonas
subvibrioides ATCC 15264]
gi|302192380|gb|ADK99951.1| Type II secretion system F domain protein [Brevundimonas
subvibrioides ATCC 15264]
Length = 326
Score = 41.2 bits (95), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 38/171 (22%), Positives = 76/171 (44%), Gaps = 9/171 (5%)
Query: 159 VGFCAPSVWISNLVQKRQ-SSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVP 217
VG P W+ + KR+ + +A+D+++ ++SG+ + + +A + P
Sbjct: 131 VGLGLPR-WVVGFIGKRRLKKFSLEFANAVDVIVRGIKSGLPVHDCFKIIARE---SPAP 186
Query: 218 LSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVS 277
+ E + L A E Y R +R T + + G ++G++L L +
Sbjct: 187 VGPEFQTLVEGLGVGLTLGQALEKMYERIPTPELRFFTIVIAIQQKTGGNLGEALSNLTT 246
Query: 278 ETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIG---PAILSIIDT 325
R+ R+M + KA S + II LP +++ ++G PA + ++ T
Sbjct: 247 VLRARRMMGEKIKALSSEATASAG-IIGSLPPVVMTLVGLTTPAYMGLMFT 296
>gi|163745842|ref|ZP_02153201.1| type II secretion system protein, putative [Oceanibulbus indolifex
HEL-45]
gi|161380587|gb|EDQ04997.1| type II secretion system protein, putative [Oceanibulbus indolifex
HEL-45]
Length = 320
Score = 41.2 bits (95), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 40/171 (23%), Positives = 75/171 (43%), Gaps = 4/171 (2%)
Query: 159 VGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPL 218
+G A W+S+ KR S I+ PDA++L++ + G A+ V+++I PL
Sbjct: 125 MGVGAVFFWVSHKAGKRMSMIEEQLPDAVELMVRSLRVGHPFSNAISIVSKEI---QDPL 181
Query: 219 SEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSE 278
+ E + E ++ + A ++ R M +R A+ + G ++ + L L
Sbjct: 182 ASEFGVIADEAAYGRDLGEALKDMAERLDMQDLRFLAVAVTIQQQSGGNLAEILAGLAKV 241
Query: 279 TRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMKDH 329
R+ + KA + K + + F P+ LV+I D ++DH
Sbjct: 242 IRARFRLFRRVKAITAEAKWSGKFLSGF-PLAALVVINLGDPHYYDEVRDH 291
>gi|319788659|ref|YP_004148134.1| type II secretion system F domain [Pseudoxanthomonas suwonensis
11-1]
gi|317467171|gb|ADV28903.1| Type II secretion system F domain [Pseudoxanthomonas suwonensis
11-1]
Length = 282
Score = 41.2 bits (95), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 66/142 (46%), Gaps = 4/142 (2%)
Query: 171 LVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELS 230
L ++R I+ PDAL +L + +G+ A+ + +D GQ PL++E+ L + +
Sbjct: 99 LRRRRLDRIQEQLPDALQMLASSLRAGVGFSPAMEVLVQD--GQP-PLAQELALVLRQQH 155
Query: 231 FLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKK 290
A E+F R + A+ S G ++ ++L L R +ME + K
Sbjct: 156 MGVRADEALESFSKRVPIVDAELFVSAVNISREVGGNLAETLATLAETLRRRLIMEKKVK 215
Query: 291 AASLGPKLTVPMIIFFLPVLIL 312
A + KL +++ LPV ++
Sbjct: 216 ALTAQGKLQ-GIVMALLPVFLV 236
>gi|127511577|ref|YP_001092774.1| type II secretion system protein [Shewanella loihica PV-4]
gi|126636872|gb|ABO22515.1| type II secretion system protein [Shewanella loihica PV-4]
Length = 283
Score = 41.2 bits (95), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 33/145 (22%), Positives = 69/145 (47%), Gaps = 4/145 (2%)
Query: 171 LVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELS 230
L ++R+ PDAL+++ ++SG ++ A+ +AE++ P+ +E L + E
Sbjct: 100 LHKRRRRKFVHQLPDALNMIASSMQSGANVSNAIEFMAEEM---EAPIKQEFQLFLREQR 156
Query: 231 FLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKK 290
A +N + R + + T + S G ++ + L+ L + R + ME +
Sbjct: 157 LGVEFNTALDNMFKRIPEEEFQLVTAGMQISREVGGNLAEVLQRLSATLRKKIEMEGKID 216
Query: 291 AASLGPKLTVPMIIFFLPVLILVII 315
A + K+ +++ LPV I V++
Sbjct: 217 ALTSQGKMQ-GIVMTLLPVFIGVVL 240
>gi|221195413|ref|ZP_03568468.1| putative type II secretion system protein [Atopobium rimae ATCC
49626]
gi|221184600|gb|EEE16992.1| putative type II secretion system protein [Atopobium rimae ATCC
49626]
Length = 248
Score = 40.8 bits (94), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 35/149 (23%), Positives = 68/149 (45%), Gaps = 8/149 (5%)
Query: 172 VQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSF 231
+ ++++I + P LD+L + + SG+S D +L G LSE+M + A LS+
Sbjct: 96 IAHQRNAIIKEMPRMLDVLTLGLSSGLSFDSSLDLYCNRCSGV---LSEKM--SQALLSW 150
Query: 232 ---LPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAE 288
R A E + + + + +S +GT + DSL R ++ E
Sbjct: 151 QMGATTRSTALEEIAAEYGITSLLSFASVVTESLAFGTPLSDSLERQAGTIRDDQRAALE 210
Query: 289 KKAASLGPKLTVPMIIFFLPVLILVIIGP 317
+ + K+ +P+ +P +++ I+GP
Sbjct: 211 AEIEKVPVKMLLPLGTLIVPAMLIAILGP 239
>gi|14590540|ref|NP_142608.1| hypothetical protein PH0653 [Pyrococcus horikoshii OT3]
gi|3257061|dbj|BAA29744.1| 358aa long hypothetical protein [Pyrococcus horikoshii OT3]
Length = 358
Score = 40.8 bits (94), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 36/162 (22%), Positives = 76/162 (46%), Gaps = 15/162 (9%)
Query: 158 YVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAE-DIGGQSV 216
Y+ F SVW ++R +++A P L + + +GI + +A+ V++ D G
Sbjct: 166 YMRFYPKSVW-----KRRVEEVEKALPYVLRHMASLLNAGIGLAEAMVSVSKADYG---- 216
Query: 217 PLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLV 276
+SEE + + E+ + + A F + + D V + ++++ ++G ++ D L +
Sbjct: 217 VVSEEFAMVVQEMHKGSSFEDALTKFEEKMKSDMVSRVVKQILRALKFGGNLADILYKMA 276
Query: 277 SETRSE---RLMEAEKKAASLGPKLTVPMIIFFLPVLILVII 315
E E +LM+ +K G + +P L++V+I
Sbjct: 277 DEFSFEYRIKLMDYVQKIN--GISFVYMFMTVVMPTLLIVVI 316
>gi|303248307|ref|ZP_07334569.1| Type II secretion system F domain protein [Desulfovibrio
fructosovorans JJ]
gi|302490332|gb|EFL50244.1| Type II secretion system F domain protein [Desulfovibrio
fructosovorans JJ]
Length = 326
Score = 40.8 bits (94), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 46/92 (50%), Gaps = 6/92 (6%)
Query: 159 VGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPL 218
+GF P WI+ KR + +R P+ALDL+ + +G + + V + + P+
Sbjct: 132 LGFL-PFKWIAMRKAKRMTEFERQLPEALDLVGRALRAGHTFTSGMGMVVSEF---AEPI 187
Query: 219 SEEMLLTIAELSFLPNRQVAFENFYNRTQMDC 250
S E T+ E++F VA +N +R +DC
Sbjct: 188 SSEFRTTLEEINFGMGVTVALDNLMDR--VDC 217
>gi|111220778|ref|YP_711572.1| hypothetical protein FRAAL1321 [Frankia alni ACN14a]
gi|111148310|emb|CAJ59982.1| putative membrane protein [Frankia alni ACN14a]
Length = 316
Score = 40.8 bits (94), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 37/158 (23%), Positives = 68/158 (43%), Gaps = 9/158 (5%)
Query: 167 WISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTI 226
W++ + +R+ + +P +LL + V +G S AL RV+ G+ L E+ L +
Sbjct: 159 WLTRAIGEREDRMLLEFPTVAELLALAVTAGESAIGALERVSRLTHGE---LGRELRLAL 215
Query: 227 AELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVL---VSETRSER 283
A+ A E RT + + + + GT + D LR V E +
Sbjct: 216 ADARAGATLVQALEGIAARTALAPLTRFVDGMAVAIERGTPLADILRAQAMDVREAGKRQ 275
Query: 284 LMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILS 321
L+EA + + +P++ LP ++ PA++S
Sbjct: 276 LLEAGGRKEI---AMMIPVVFLVLPTTVIFAFYPALVS 310
>gi|15668960|ref|NP_247764.1| hypothetical protein MJ_0779 [Methanocaldococcus jannaschii DSM
2661]
gi|2833584|sp|Q58189|Y779_METJA RecName: Full=Uncharacterized protein MJ0779
gi|1499599|gb|AAB98769.1| conserved hypothetical protein [Methanocaldococcus jannaschii DSM
2661]
Length = 299
Score = 40.8 bits (94), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 68/130 (52%), Gaps = 21/130 (16%)
Query: 153 VILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIG 212
VI +G F PS+ N ++ +++I P AL ++++ +ESG SI++AL V +
Sbjct: 62 VIYVGAALFI-PSILYENKIETLENNI----PQALYIMILALESGRSINEALLEVVKS-- 114
Query: 213 GQSVPLSEEMLLTIAELSFLPNRQVAFE-------NFYNRTQMDCVRNATQALIQSDRYG 265
++ ++ + L + N++++FE N Y+ +R + +I++ +YG
Sbjct: 115 --NIKEVSDIFRKV--LYLMENQKLSFEESMTIVSNLYDS---KVLRMLARIMIENRKYG 167
Query: 266 TSIGDSLRVL 275
+ DSL++L
Sbjct: 168 GDLSDSLKIL 177
>gi|84489944|ref|YP_448176.1| hypothetical protein Msp_1152 [Methanosphaera stadtmanae DSM 3091]
gi|84373263|gb|ABC57533.1| conserved hypothetical membrane-spanning protein [Methanosphaera
stadtmanae DSM 3091]
Length = 307
Score = 40.8 bits (94), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 31/143 (21%), Positives = 67/143 (46%), Gaps = 7/143 (4%)
Query: 154 ILIGYVGFCAPSV----WISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAE 209
I+I + PSV +IS + R+ +I+ PD L+ + + G+ + AL +++
Sbjct: 67 IIISVLFLFLPSVIMIIYISYNREHRKENIEEQLPDYLNQIASLLNVGLGFESALEELSK 126
Query: 210 DIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIG 269
G PL+ E+ + E F + + NR +D +R Q +I + G ++
Sbjct: 127 TSKG---PLNNEIKQLLIETQFKKPFNESLMDIANRNDLDNLRYIFQIIIHTRESGGNLA 183
Query: 270 DSLRVLVSETRSERLMEAEKKAA 292
+ L + + + L++ +++A+
Sbjct: 184 EVLEDISHDLKEIILLKKQRRAS 206
>gi|325964625|ref|YP_004242531.1| type II secretion system protein F [Arthrobacter phenanthrenivorans
Sphe3]
gi|323470712|gb|ADX74397.1| type II secretion system protein F [Arthrobacter phenanthrenivorans
Sphe3]
Length = 204
Score = 40.8 bits (94), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 30/46 (65%)
Query: 280 RSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDT 325
R ER AEK+AASLG KL VP+ + LP I + + P +L+++ +
Sbjct: 158 RRERFRAAEKRAASLGVKLVVPLGLCSLPAFICLGVVPVLLALVPS 203
>gi|20094142|ref|NP_613989.1| hypothetical protein MK0705 [Methanopyrus kandleri AV19]
gi|19887149|gb|AAM01919.1| Predicted membrane protein [Methanopyrus kandleri AV19]
Length = 325
Score = 40.8 bits (94), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 66/137 (48%), Gaps = 5/137 (3%)
Query: 175 RQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPN 234
R I+ PDAL ++ + +G+SI + +R VAE G+ LS E + + ++
Sbjct: 102 RIKDIEENLPDALRQMVEELRAGLSIFETIRNVAESDYGE---LSREFRIVVRDMDTGKT 158
Query: 235 RQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASL 294
+ A + R + + A + ++ G ++ D L + ++ R R +E E+KA +
Sbjct: 159 FEEAILDMAERVNSELLTRAVRLTVRISMSGGALADVLEAVENDIREVRRIELERKAITT 218
Query: 295 GPKLTVPM--IIFFLPV 309
P L + + +I LPV
Sbjct: 219 MPCLALALGGLISGLPV 235
>gi|332671124|ref|YP_004454132.1| Type II secretion system F domain-containing protein [Cellulomonas
fimi ATCC 484]
gi|332340162|gb|AEE46745.1| Type II secretion system F domain protein [Cellulomonas fimi ATCC
484]
Length = 310
Score = 40.8 bits (94), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 39/160 (24%), Positives = 70/160 (43%), Gaps = 14/160 (8%)
Query: 167 W-ISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLT 225
W + V +R+S + + P +LL + V +G AL RV G+ L+ E+ T
Sbjct: 153 WALGRQVAQRESRMLQEMPTVAELLALAVGAGEGATGALERVVRSTRGE---LTAELERT 209
Query: 226 IAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSE--- 282
+A+ A + +RT + + + + + GT + + LR + R E
Sbjct: 210 LADARAGAPLTAALDGLADRTGLAALARFAEGVAVAVERGTPLAEVLRAQAQDVREEVRR 269
Query: 283 RLME--AEKKAASLGPKLTVPMIIFFLPVLILVIIGPAIL 320
LME K+ A + VP++ LPV + + P++L
Sbjct: 270 DLMETGGRKEVA-----MMVPVVFLILPVTVAFAVFPSLL 304
>gi|225174957|ref|ZP_03728954.1| type II secretion system protein [Dethiobacter alkaliphilus AHT 1]
gi|225169597|gb|EEG78394.1| type II secretion system protein [Dethiobacter alkaliphilus AHT 1]
Length = 322
Score = 40.4 bits (93), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 33/167 (19%), Positives = 78/167 (46%), Gaps = 7/167 (4%)
Query: 154 ILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGG 213
+L+ +GF AP +++ +R ++ P+AL+++ + +G S QA+ V ++
Sbjct: 122 VLVAVIGFKAPGIYVDVAKGRRMQALNNQLPEALNIISSGLRAGYSFPQAMAVVGREM-- 179
Query: 214 QSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLR 273
P+++E + + + A RT + + +L+ + G ++ + L
Sbjct: 180 -DAPIADEFNRVLRDNRLGKSMDDALLEMTARTDNEDLDLVVTSLLIQRQVGGNMAEVLN 238
Query: 274 VLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPV---LILVIIGP 317
+ R ++ E +A + +++ +II LP+ L+L++I P
Sbjct: 239 KIEHTIRERMRIKGEIRALTAQQRMS-AVIIVLLPIAVALLLLVINP 284
>gi|90412172|ref|ZP_01220178.1| hypothetical Flp pilus assembly protein TadB [Photobacterium
profundum 3TCK]
gi|90326896|gb|EAS43281.1| hypothetical Flp pilus assembly protein TadB [Photobacterium
profundum 3TCK]
Length = 302
Score = 40.4 bits (93), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 80/172 (46%), Gaps = 14/172 (8%)
Query: 159 VGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPL 218
+GF W L++KRQ+ ++A+PDAL++++ V +G S+ Q++ V + + + L
Sbjct: 110 LGFLWGWAW---LIKKRQNEFEQAFPDALNIMMSAVTAGESVMQSISYVGKTLDNKVGDL 166
Query: 219 SEEM--LLTIAELSFLPNRQV---AFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLR 273
++M L + E P QV A +++ T + V + + + + +R
Sbjct: 167 FQDMGERLKLGE----PPEQVFKRASKHYPYPTFLFFVVTIRANMSRGGQLKAVMARLIR 222
Query: 274 VLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDT 325
VLV ++ A A L K+ + F+ +IL I P L+ + T
Sbjct: 223 VLVDSRTLDKKKSAMTSEARLSAKIVASLPFIFM--VILSFISPQNLNYVLT 272
>gi|260892928|ref|YP_003239025.1| Type II secretion system F domain protein [Ammonifex degensii KC4]
gi|260865069|gb|ACX52175.1| Type II secretion system F domain protein [Ammonifex degensii KC4]
Length = 313
Score = 40.4 bits (93), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 62/128 (48%), Gaps = 3/128 (2%)
Query: 164 PSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEML 223
P +++ +L ++R + + PDAL L+ + +G + QA+ V ++ P+S+E
Sbjct: 123 PFLYLRHLRRQRLARFQSQLPDALSLMANTMRAGFGMLQAMDVVRREM---PPPISQEFG 179
Query: 224 LTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSER 283
T+AEL + A E +R D + A A+I + G ++ + L + + R
Sbjct: 180 RTLAELGLGMGVEEALERLSHRVPSDDLDLAVTAVIIQRQVGGNLAEILDNIATTIRERV 239
Query: 284 LMEAEKKA 291
++ E +A
Sbjct: 240 RLKGEIRA 247
>gi|163751751|ref|ZP_02158969.1| hypothetical Flp pilus assembly protein TadB [Shewanella benthica
KT99]
gi|161328403|gb|EDP99562.1| hypothetical Flp pilus assembly protein TadB [Shewanella benthica
KT99]
Length = 325
Score = 40.4 bits (93), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 31/145 (21%), Positives = 69/145 (47%), Gaps = 6/145 (4%)
Query: 172 VQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSF 231
KR +I+ ++PD LD++ +++G S A++ E++ G PL++E L +++
Sbjct: 143 TNKRMDTIEASFPDGLDVIRRALQAGYSFTDAIKLATEELEG---PLAKEFKLMFVNINY 199
Query: 232 LPNRQVAFENFYNRT-QMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKK 290
+ ++A F R + + A+ ++Q + G ++ +++ L R K
Sbjct: 200 TKDIKLALLGFIQRVPSVSALAFASAVMVQRET-GGNLAENIENLTRVIRQRFKFRRRVK 258
Query: 291 AASLGPKLTVPMIIFFLPVLILVII 315
S +L+ ++I LP + +I
Sbjct: 259 TLSAEGRLSAWILI-LLPFALFAVI 282
>gi|77456872|ref|YP_346377.1| type II secretion system protein [Pseudomonas fluorescens Pf0-1]
gi|77380875|gb|ABA72388.1| putative type II secretion system protein [Pseudomonas fluorescens
Pf0-1]
Length = 296
Score = 40.4 bits (93), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 83/171 (48%), Gaps = 22/171 (12%)
Query: 159 VGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSV-P 217
+G+ P ++ +RQ + + LL I E+G++++QALR ++ + GQ++ P
Sbjct: 127 IGYLLPKRLLAMAAGRRQKQLATEISTFIPLLRILFEAGMAVEQALRVLSHE--GQTLLP 184
Query: 218 -LSEEMLLTIA------ELSFLPN---RQVAFENFYNRTQMDCVRNATQALIQSDRYGTS 267
L++E+ L +A EL N R +A + F + CV +
Sbjct: 185 VLTQELRLVLARVDSGLELGEELNKATRLLAVDEFTD----TCVILQQLLQQGGGAMKSL 240
Query: 268 IGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPA 318
+ +L+ L+ + R RL E K ++ K++V M++F P L++V+ GP
Sbjct: 241 L--ALKQLLDDRRLTRLQEYISKMSA---KMSVVMMMFLFPALLIVLAGPG 286
>gi|110636325|ref|YP_676533.1| type II secretion system protein [Mesorhizobium sp. BNC1]
gi|110287309|gb|ABG65368.1| type II secretion system protein [Chelativorans sp. BNC1]
Length = 337
Score = 40.4 bits (93), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 75/320 (23%), Positives = 153/320 (47%), Gaps = 52/320 (16%)
Query: 14 LAVAITTAVSIFSLIYAVVIPSLGS-GELEKRMKSVA---VEREILRKQQITSLQKDSAS 69
LA + A S L Y ++ ++ S ++E+R+++V +E ++R +D A+
Sbjct: 9 LAFVVLAACSAGGLAYVLMFNTIASEKKVERRLETVKRAQIEGNVVRAA------RDRAA 62
Query: 70 SRLRTRDS--KSLRNF-VKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPII 126
+ R S +SL++ ++ + L + ++R AG E S+ ++ VV ++
Sbjct: 63 EIAKRRRSIQESLKDIETRQKDQDRFLKRPPLKIQIRQAGL--EMSMERFYILSAVVGLL 120
Query: 127 FLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDA 186
F+I + +I G P L V ++ G+ F AP I+ L ++R + +P+A
Sbjct: 121 FVI--VTFIAGA------PL-LAVAGAMVAGF--FGAPRWIIAYLRRRRVQAFLNEFPNA 169
Query: 187 LDLLLICVESGISIDQALRRVA----EDIGGQSVPL--SEEMLLTIAELSF-----LPNR 235
LD+++ V+SG+ ++ A+R +A E + + L ++++ L +AE + +P
Sbjct: 170 LDIIVRAVKSGLPLNDAVRMIAVEAQEPVRTEFRRLVEAQQLGLPMAEAAMRMSETMPCP 229
Query: 236 QVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLG 295
+V F + Q N ++AL G+ RVL R + ++A +A S+
Sbjct: 230 EVNFFGIVLQIQSQAGGNLSEAL----------GNLSRVL----RERKKIKARVQALSME 275
Query: 296 PKLTVPMIIFFLPVLILVII 315
K + +II LP+++ ++
Sbjct: 276 AKASA-VIIGALPIVVAALV 294
>gi|255263835|ref|ZP_05343177.1| type II secretion system protein [Thalassiobium sp. R2A62]
gi|255106170|gb|EET48844.1| type II secretion system protein [Thalassiobium sp. R2A62]
Length = 322
Score = 40.4 bits (93), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 63/134 (47%), Gaps = 6/134 (4%)
Query: 148 LRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRV 207
+R G +L+G G +W++N +KR + I+ PDA++L++ + G A+ V
Sbjct: 119 IRAGVSLLMGVGGVF---IWVNNKAKKRLALIEEQLPDAVELMVRSLRVGHPFTSAVAIV 175
Query: 208 AEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTS 267
A+++ PL EM + E ++ + A + R +M +R A+ + G +
Sbjct: 176 AKEV---PDPLGSEMGVISDEAAYGRDVGEALKAMAERLEMQDMRFLAVAVTIQQQAGGN 232
Query: 268 IGDSLRVLVSETRS 281
+ + L L R+
Sbjct: 233 LAEILHGLAQVIRA 246
>gi|210614117|ref|ZP_03290053.1| hypothetical protein CLONEX_02266 [Clostridium nexile DSM 1787]
gi|210150818|gb|EEA81826.1| hypothetical protein CLONEX_02266 [Clostridium nexile DSM 1787]
Length = 430
Score = 40.4 bits (93), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 36/154 (23%), Positives = 64/154 (41%), Gaps = 7/154 (4%)
Query: 175 RQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSE-----EMLLTIAEL 229
R+ + +P+ ++ + + +G++ R+ ++ Q + E EM T E+
Sbjct: 276 RKEQMLTDYPEIINKFALLLSTGMTTKNVWERIVKNYEEQKICTGERAAYEEMRYTCNEM 335
Query: 230 SFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGT-SIGDSLRVLVSETRSERLMEAE 288
A+E F R + L Q+ + GT + D LR + R A+
Sbjct: 336 QSGITEAEAYERFGKRCGISVYMKFGALLAQNLKKGTKGMTDLLRNESDQAFENRKSRAK 395
Query: 289 KKAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
+ G KL PM VL++VI+ PA LS+
Sbjct: 396 RLGEEAGTKLLAPMFGMLAIVLVIVIV-PAFLSM 428
>gi|170720030|ref|YP_001747718.1| type II secretion system protein [Pseudomonas putida W619]
gi|169758033|gb|ACA71349.1| type II secretion system protein [Pseudomonas putida W619]
Length = 295
Score = 40.4 bits (93), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 56/229 (24%), Positives = 106/229 (46%), Gaps = 35/229 (15%)
Query: 106 GFRSEYSLNILLVVRLVVPIIFLILGIIW---IFGYD--KLLEYPFQLRVGAVILIGYVG 160
G+R + ++L +P++ +IL +I G D L +P +GA L+
Sbjct: 76 GWRRSRQRALFAAMQLGLPLVAVILTLILQQAALGSDGTHWLVWPL-FALGASYLL---- 130
Query: 161 FCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSV--PL 218
P ++ ++RQ I + LL I E+G++++QALR ++++ GQ++ +
Sbjct: 131 ---PKRLLAVAARRRQQRIALEVSLMIPLLRILFETGLAVEQALRVLSQE--GQALLPEI 185
Query: 219 SEEMLLTI----AELSFLPN-----RQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIG 269
SEE+ + + L+ P R +A + F + CV Q L+Q G+
Sbjct: 186 SEELRQVLQRVDSGLALGPELEKSARVLAVDEFID----TCV-ILQQLLVQ----GSGAM 236
Query: 270 DSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPA 318
SL L RL +++ + + K++ M++F P L++V+ GP
Sbjct: 237 KSLLALKDLLDDRRLTRMQERVSKMSAKMSAVMMVFLFPALLIVLAGPG 285
>gi|258650978|ref|YP_003200134.1| type II secretion system protein [Nakamurella multipartita DSM
44233]
gi|258554203|gb|ACV77145.1| type II secretion system protein [Nakamurella multipartita DSM
44233]
Length = 267
Score = 40.4 bits (93), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 34/148 (22%), Positives = 70/148 (47%), Gaps = 9/148 (6%)
Query: 188 DLLLICVESGISIDQALRRVAEDIG--GQSVPLSEEMLLTI----AELSFLPNRQVAFEN 241
+LL ++SG+++ ALR V+E +G G S + L + A L+ + A+
Sbjct: 123 ELLAAALDSGLAMATALRAVSEVLGDQGPSAGQQQSALAALDSVAAMLALGADTDTAWRA 182
Query: 242 FYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVP 301
+ + A + +S GT++ D++R ++ R + E+ + A G +T P
Sbjct: 183 VDADADLAPLAAAAR---RSAVGGTTLADAVREHAAQLREQARDESVRSAGRAGVLMTAP 239
Query: 302 MIIFFLPVLILVIIGPAILSIIDTMKDH 329
+ + FLP + + + P +L ++ + H
Sbjct: 240 LGVCFLPAFLCLGLAPVVLGLLGRLTIH 267
>gi|104779904|ref|YP_606402.1| type II/IV secretion system membrane protein [Pseudomonas
entomophila L48]
gi|95108891|emb|CAK13587.1| putative type II/IV secretion system membrane protein [Pseudomonas
entomophila L48]
Length = 295
Score = 40.0 bits (92), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 67/135 (49%), Gaps = 10/135 (7%)
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVP-LSEEMLLTI----AELSFLPNRQVAFENFY 243
LL I E+G++++QALR +A++ G VP +S+E+ L + + L+ P + +
Sbjct: 156 LLRILFETGLAVEQALRVLAQE-GRSLVPNISDELRLVLQRVDSGLALGPELEKSARLLA 214
Query: 244 NRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMI 303
+D Q L+Q G+ SL L RL +++ + + K++ M+
Sbjct: 215 VDELIDTCVILQQLLVQ----GSGSMKSLLALKELLDDRRLTGLQERVSKMSAKMSAVMM 270
Query: 304 IFFLPVLILVIIGPA 318
+F P L++V+ GP
Sbjct: 271 VFLFPALLIVLAGPG 285
>gi|82703470|ref|YP_413036.1| type II secretion system protein [Nitrosospira multiformis ATCC
25196]
gi|82411535|gb|ABB75644.1| type II secretion system protein [Nitrosospira multiformis ATCC
25196]
Length = 323
Score = 40.0 bits (92), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 41/187 (21%), Positives = 85/187 (45%), Gaps = 9/187 (4%)
Query: 141 LLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISI 200
LL PF + +L G G P + + +KR I+R P+ +DL+ +++G +
Sbjct: 114 LLGLPFAV----TLLCGATGSVLPLFFTLSAKRKRLEKIERQLPEVIDLMARALKAGHAF 169
Query: 201 DQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQ 260
AL+ + D P ++E LT E++F + Q A N R + +R A++
Sbjct: 170 SGALQMASTD---GPEPAADEFRLTFDEINFGVSVQDALMNLATRVPITDLRYFVIAVLI 226
Query: 261 SDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMI--IFFLPVLILVIIGPA 318
G ++ + L + R+ + + + S +L+ ++ + F L++ ++ P
Sbjct: 227 QRESGGNLAELLDKISGLIRARLTLLGKIRVLSAEGRLSAWILSCLPFATALMINLVNPG 286
Query: 319 ILSIIDT 325
L+++ T
Sbjct: 287 FLTVLWT 293
>gi|83859361|ref|ZP_00952882.1| hypothetical protein OA2633_13190 [Oceanicaulis alexandrii
HTCC2633]
gi|83852808|gb|EAP90661.1| hypothetical protein OA2633_13190 [Oceanicaulis alexandrii
HTCC2633]
Length = 331
Score = 40.0 bits (92), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 33/150 (22%), Positives = 73/150 (48%), Gaps = 5/150 (3%)
Query: 167 WISNLVQK-RQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLT 225
W+ +++K RQ + DALD+++ V+SG+ +++ L+ +A++ P+ +E L
Sbjct: 143 WVLGMMRKGRQKKFTENFADALDIIVRGVKSGLPLNETLKIIAQE---GEAPVKQEFQLL 199
Query: 226 IAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLM 285
+ L+ + + + R + + T L + G ++ ++L L + R+ ++M
Sbjct: 200 VEGLAVGVDVEEGMRRMHRRMPLPELSFFTTVLAIQQKTGGNLAEALNNLSAVLRARKMM 259
Query: 286 EAEKKAASLGPKLTVPMIIFFLPVLILVII 315
+ A S K + II LP + V++
Sbjct: 260 REKVSALSSEAKASA-WIIGSLPPGVGVMV 288
>gi|289706419|ref|ZP_06502777.1| type II secretion system F domain protein [Micrococcus luteus SK58]
gi|289556914|gb|EFD50247.1| type II secretion system F domain protein [Micrococcus luteus SK58]
Length = 313
Score = 40.0 bits (92), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 63/140 (45%), Gaps = 11/140 (7%)
Query: 184 PDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFY 243
P +L + V +G S AL R+A G+ L+ E +T+A++ + A +
Sbjct: 174 PSVAELFALSVGAGESAAGALERIAGTARGE---LAGEFRVTLADMRAGASLSAALKAMG 230
Query: 244 NRTQMDCV-RNATQALIQSDRYGTSIGDSLRVLVSETRS---ERLMEAEKKAASLGPKLT 299
R Q+ V R LI DR GT + D LR + R LMEA + ++
Sbjct: 231 RRVQLAPVERFIGGVLIALDR-GTPLADVLRAQAQDVREMGRRELMEAAGRKEI---QMM 286
Query: 300 VPMIIFFLPVLILVIIGPAI 319
VP++ LP+ ++ + P I
Sbjct: 287 VPLVFGILPLTVIFAVFPGI 306
>gi|320095978|ref|ZP_08027592.1| hypothetical protein HMPREF9005_2204 [Actinomyces sp. oral taxon
178 str. F0338]
gi|319977085|gb|EFW08814.1| hypothetical protein HMPREF9005_2204 [Actinomyces sp. oral taxon
178 str. F0338]
Length = 178
Score = 40.0 bits (92), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 76/179 (42%), Gaps = 20/179 (11%)
Query: 153 VILIG-YVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVA--- 208
V L+G VG A ++ RQ ++ A PDA +LL + V +G S+ AL RVA
Sbjct: 7 VALLGCVVGMSAWDRLLTARADSRQRRVEAAVPDASELLALAVGAGESVPAALDRVASLS 66
Query: 209 -EDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTS 267
D+G +E+ +A++ A + R + Q L + G+
Sbjct: 67 HSDLG-------DELARAVADIRLGAPSVRALTDLAARNDSPALSRLCQTLSTAIGRGSP 119
Query: 268 IG----DSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
+ D R + E +RLME K + P++ LPV +L + P ++++
Sbjct: 120 LAAVLHDQARD-IREASRQRLMEEGGKREI---AMLFPVVFLILPVTVLFALYPGLMAL 174
>gi|315606116|ref|ZP_07881147.1| conserved hypothetical protein [Actinomyces sp. oral taxon 180 str.
F0310]
gi|315312398|gb|EFU60484.1| conserved hypothetical protein [Actinomyces sp. oral taxon 180 str.
F0310]
Length = 298
Score = 40.0 bits (92), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 66/151 (43%), Gaps = 3/151 (1%)
Query: 172 VQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSF 231
++RQ +I A PD +LL + V +G SI A+ RVA GG PL E+ LT A +
Sbjct: 147 ARRRQRAIDAAVPDCAELLALAVAAGESIPAAIERVAGCAGG---PLGSELALTSAHIRN 203
Query: 232 LPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKA 291
A RT + ++ L + G+ + L + R L ++
Sbjct: 204 GTPSVRALAELVERTDSPSLTRLSRTLTTAIERGSPLASVLHDQARDQRERSLASLMEEG 263
Query: 292 ASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
+ +P++ LPV ++ + P ++++
Sbjct: 264 GRREIAMLLPVVFLILPVTVMFALYPGLIAL 294
>gi|257790323|ref|YP_003180929.1| type II secretion system protein [Eggerthella lenta DSM 2243]
gi|317489772|ref|ZP_07948271.1| hypothetical protein HMPREF1023_01970 [Eggerthella sp. 1_3_56FAA]
gi|325830267|ref|ZP_08163724.1| type II secretion system protein F domain protein [Eggerthella sp.
HGA1]
gi|257474220|gb|ACV54540.1| type II secretion system protein [Eggerthella lenta DSM 2243]
gi|316911118|gb|EFV32728.1| hypothetical protein HMPREF1023_01970 [Eggerthella sp. 1_3_56FAA]
gi|325487734|gb|EGC90172.1| type II secretion system protein F domain protein [Eggerthella sp.
HGA1]
Length = 306
Score = 40.0 bits (92), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 29/131 (22%), Positives = 57/131 (43%), Gaps = 3/131 (2%)
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
AL + V S +++++ALR A + PL EE+ +A+ ++ +AFE R
Sbjct: 135 ALPQIAASVRSSLTLERALRTAASHV---EDPLREELARVLADTAYGTTLAMAFERMARR 191
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
T VR+ A+ R+G ++ L ++ + + E K G +L +
Sbjct: 192 TDSPDVRSLAAAVRIQQRFGGAVAPVLDLIAAHAAARLRTSRELKTELAGTRLAKWFVAL 251
Query: 306 FLPVLILVIIG 316
+P + ++
Sbjct: 252 AMPAIFFIMFA 262
>gi|289424541|ref|ZP_06426324.1| type II secretion system F domain protein [Propionibacterium acnes
SK187]
gi|289428815|ref|ZP_06430495.1| type II secretion system F domain protein [Propionibacterium acnes
J165]
gi|295129802|ref|YP_003580465.1| type II secretion system F domain protein [Propionibacterium acnes
SK137]
gi|289155238|gb|EFD03920.1| type II secretion system F domain protein [Propionibacterium acnes
SK187]
gi|289157816|gb|EFD06039.1| type II secretion system F domain protein [Propionibacterium acnes
J165]
gi|291377230|gb|ADE01085.1| type II secretion system F domain protein [Propionibacterium acnes
SK137]
gi|313814294|gb|EFS52008.1| type II secretion system F domain protein [Propionibacterium acnes
HL025PA1]
gi|313834346|gb|EFS72060.1| type II secretion system F domain protein [Propionibacterium acnes
HL056PA1]
gi|314974780|gb|EFT18875.1| type II secretion system F domain protein [Propionibacterium acnes
HL053PA1]
gi|314980264|gb|EFT24358.1| type II secretion system F domain protein [Propionibacterium acnes
HL072PA2]
gi|314985439|gb|EFT29531.1| type II secretion system F domain protein [Propionibacterium acnes
HL005PA1]
gi|314987403|gb|EFT31494.1| type II secretion system F domain protein [Propionibacterium acnes
HL005PA2]
gi|315082165|gb|EFT54141.1| type II secretion system F domain protein [Propionibacterium acnes
HL078PA1]
gi|315086398|gb|EFT58374.1| type II secretion system F domain protein [Propionibacterium acnes
HL002PA3]
gi|315097273|gb|EFT69249.1| type II secretion system F domain protein [Propionibacterium acnes
HL038PA1]
gi|315106264|gb|EFT78240.1| type II secretion system F domain protein [Propionibacterium acnes
HL030PA1]
gi|327445234|gb|EGE91888.1| type II secretion system F domain protein [Propionibacterium acnes
HL013PA2]
gi|327447319|gb|EGE93973.1| type II secretion system F domain protein [Propionibacterium acnes
HL043PA1]
gi|328758434|gb|EGF72050.1| type II secretion system F domain protein [Propionibacterium acnes
HL020PA1]
gi|332674641|gb|AEE71457.1| hypothetical protein PAZ_c02540 [Propionibacterium acnes 266]
Length = 249
Score = 40.0 bits (92), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 43/188 (22%), Positives = 86/188 (45%), Gaps = 18/188 (9%)
Query: 142 LEYPFQLRVGAVILIGYVGFCAPSVWISNLVQ---KRQSSIKRA--WPDALDLLLICVES 196
+ +PF G +L+G V + W S ++ R+ RA P+AL +L +E+
Sbjct: 70 VPWPFPAAAGLSVLVGTVMW-----WGSGRLESSGHRRMEQHRAAQLPEALLMLSSAMEA 124
Query: 197 GISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSF-LPNRQVAFENFYNRTQMDCVRNAT 255
G+ + A+ VAE + G P +E++ + L+ +P+ + + + ++ R+
Sbjct: 125 GLPLRSAVTTVAESLEG---PCAEDLRRLASSLAAGVPDSRA----WNDLASVEVWRDPA 177
Query: 256 QALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVII 315
Q + ++ G I + L ++ + + EKKA G P++ LP +LV +
Sbjct: 178 QDVSRAVDSGEGISELLSAHAAQLQVAAAEKTEKKARKAGVDAIGPLVCCHLPAFLLVGV 237
Query: 316 GPAILSII 323
P I ++
Sbjct: 238 VPIIAGMV 245
>gi|313793203|gb|EFS41270.1| type II secretion system F domain protein [Propionibacterium acnes
HL110PA1]
gi|313802708|gb|EFS43926.1| type II secretion system F domain protein [Propionibacterium acnes
HL110PA2]
gi|314964615|gb|EFT08715.1| type II secretion system F domain protein [Propionibacterium acnes
HL082PA1]
gi|315078730|gb|EFT50756.1| type II secretion system F domain protein [Propionibacterium acnes
HL053PA2]
gi|327457152|gb|EGF03807.1| type II secretion system F domain protein [Propionibacterium acnes
HL092PA1]
Length = 249
Score = 40.0 bits (92), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 43/188 (22%), Positives = 86/188 (45%), Gaps = 18/188 (9%)
Query: 142 LEYPFQLRVGAVILIGYVGFCAPSVWISNLVQ---KRQSSIKRA--WPDALDLLLICVES 196
+ +PF G +L+G V + W S ++ R+ RA P+AL +L +E+
Sbjct: 70 VPWPFPAAAGLSVLVGTVMW-----WGSGRLESSGHRRMEQHRAAQLPEALLMLSSAMEA 124
Query: 197 GISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSF-LPNRQVAFENFYNRTQMDCVRNAT 255
G+ + A+ VAE + G P +E++ + L+ +P+ + + + ++ R+
Sbjct: 125 GLPLRSAVTTVAESLEG---PCAEDLRRLASSLAAGVPDSRA----WNDLASVEVWRDPA 177
Query: 256 QALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVII 315
Q + ++ G I + L ++ + + EKKA G P++ LP +LV +
Sbjct: 178 QDVSRAVDSGEGISELLSAHAAQLQVAAAEKTEKKARKAGVDAIGPLVCCHLPAFLLVGV 237
Query: 316 GPAILSII 323
P I ++
Sbjct: 238 VPIIAGMV 245
>gi|220913900|ref|YP_002489209.1| type II secretion system protein [Arthrobacter chlorophenolicus A6]
gi|219860778|gb|ACL41120.1| type II secretion system protein [Arthrobacter chlorophenolicus A6]
Length = 200
Score = 40.0 bits (92), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 30/46 (65%)
Query: 280 RSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDT 325
R ER AEK+AASLG KL +P+ + LP I + + P +L+++ +
Sbjct: 153 RRERFRAAEKRAASLGVKLVIPLGLCSLPAFICLGVVPVLLALVPS 198
>gi|152994351|ref|YP_001339186.1| type II secretion system protein [Marinomonas sp. MWYL1]
gi|150835275|gb|ABR69251.1| type II secretion system protein [Marinomonas sp. MWYL1]
Length = 329
Score = 39.7 bits (91), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 60/134 (44%), Gaps = 5/134 (3%)
Query: 161 FCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSE 220
FCA V N + K K+ P A+D ++ +G+ + A VAE++ G PL++
Sbjct: 135 FCAVLVLYRNAMAKHLKEFKQNLPQAIDSIVRIARAGVPVSNAFNLVAENLPG---PLAK 191
Query: 221 EMLLTIAELSF-LPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSET 279
E L L +P RQ A ++ R ++ R LI + G + D+L L
Sbjct: 192 EFSLVDKWLRLGVPLRQ-AMQDSAKRVPLNEYRFFVVILIINQEAGGRLSDTLERLAHTL 250
Query: 280 RSERLMEAEKKAAS 293
R + + + +A +
Sbjct: 251 RERQELALKIRAKT 264
>gi|28493158|ref|NP_787319.1| hypothetical protein TWT191 [Tropheryma whipplei str. Twist]
gi|28476198|gb|AAO44288.1| unknown [Tropheryma whipplei str. Twist]
Length = 298
Score = 39.7 bits (91), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 45/202 (22%), Positives = 81/202 (40%), Gaps = 22/202 (10%)
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNL----------VQKRQS 177
L+ GI W+ + L G V ++ G AP+V+ + V+KR+
Sbjct: 105 LLTGIFWVL-------FCLLLFSGQVNIV--FGLLAPAVFAGSFWCIENNLRRYVKKRKQ 155
Query: 178 SIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQV 237
I P A + L + V +G + A++R+ G+ S E+ + +S +
Sbjct: 156 KILNEMPSAFEFLSLSVSAGEGVLDAIKRICFISKGE---FSIELKKVLIGVSSGDTLER 212
Query: 238 AFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPK 297
+ + + + A +I + GT + D L E R+ + ++A
Sbjct: 213 CLKRMAAKLNIVSIDRAVSQIITAIERGTPLADILIKQAKEARNATRVALIEQAGKKEIA 272
Query: 298 LTVPMIIFFLPVLILVIIGPAI 319
+ P++ F LPV IL I P I
Sbjct: 273 MMFPLVFFILPVTILFAIFPGI 294
>gi|304390831|ref|ZP_07372783.1| type II secretion system protein [Mobiluncus curtisii subsp.
curtisii ATCC 35241]
gi|304325714|gb|EFL92960.1| type II secretion system protein [Mobiluncus curtisii subsp.
curtisii ATCC 35241]
Length = 303
Score = 39.7 bits (91), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 60/260 (23%), Positives = 112/260 (43%), Gaps = 34/260 (13%)
Query: 70 SRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLI 129
+R T S S + ++L L + D V + R + R SL +L VV
Sbjct: 69 TRFLTFISPSKESVERRLELAGLPRD---VCEFRRSQLRWAASLGMLAVV---------- 115
Query: 130 LGIIWIFGYDKLLEYPFQLRVGAVILIGYV--GFCAPSVWISNLVQKRQSSIKRAWPDAL 187
L II +G + L P V+L +V G P ++ ++RQ + + PD +
Sbjct: 116 LSIIGFWG--RTLPIPGAF----VMLTCFVLAGLLVPDYRLTGAARRRQLRLNQELPDVI 169
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAEL-SFLPNRQVAFENFYNRT 246
+LL + V +G + AL RV+ G + E++L S P+ A R
Sbjct: 170 ELLALAVGAGEPLYGALHRVSARCAGVAGQELEKILAAADNGDSLAPSLTAA----RARN 225
Query: 247 QMDCVRNATQALIQSDRYGTSIGDSLRVLVSET----RSERLMEAEKKAASLGPKLTVPM 302
+ + + A++ + G+ + LR V+++ R++ L E KK + VP+
Sbjct: 226 DSEILAHLIDAIVSALERGSPLAGVLRSQVADSRAVARTQLLTEGGKKEV----LMMVPV 281
Query: 303 IIFFLPVLILVIIGPAILSI 322
+ LP+ ++ + P ++++
Sbjct: 282 VFLILPLTVVFALYPGLVAL 301
>gi|257784834|ref|YP_003180051.1| type II secretion system protein [Atopobium parvulum DSM 20469]
gi|257473341|gb|ACV51460.1| type II secretion system protein [Atopobium parvulum DSM 20469]
Length = 204
Score = 39.7 bits (91), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 34/145 (23%), Positives = 69/145 (47%), Gaps = 8/145 (5%)
Query: 176 QSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSF---L 232
+ S R P+ +D+L++ + SG+S D AL G+ LS+E L+ A +++
Sbjct: 57 RKSCLREMPEMIDILILGLSSGLSFDSALDLYCLRESGE---LSKE--LSNAHMTWKLGA 111
Query: 233 PNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAA 292
R+ A R + +++ + ++ +GT + + L S R E+ E +
Sbjct: 112 NTREEALNQMAARVGVPSLKSFATVVNEALTFGTPLAEILDRQASVLRDEQRSLLETEIE 171
Query: 293 SLGPKLTVPMIIFFLPVLILVIIGP 317
+ K+ +P+ +P ++L I+GP
Sbjct: 172 KIPIKMLIPLGTLIVPAMLLAILGP 196
>gi|16127171|ref|NP_421735.1| hypothetical protein CC_2941 [Caulobacter crescentus CB15]
gi|221235972|ref|YP_002518409.1| TadB-like pilus assembly protein [Caulobacter crescentus NA1000]
gi|7208429|gb|AAF40196.1|AF229646_8 TadB [Caulobacter crescentus CB15]
gi|13424567|gb|AAK24903.1| hypothetical protein CC_2941 [Caulobacter crescentus CB15]
gi|220965145|gb|ACL96501.1| TadB-related pilus assembly protein [Caulobacter crescentus NA1000]
Length = 325
Score = 39.7 bits (91), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 36/159 (22%), Positives = 72/159 (45%), Gaps = 8/159 (5%)
Query: 167 WISNLVQK-RQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLT 225
W+ + K R A+ DA+D+++ ++SG+ + L+ + ++ PL+ E +
Sbjct: 137 WVLGFLAKGRTQKFTEAFADAVDIIVRGIKSGLPVHDCLKIIGKEC---PEPLAGEFRIL 193
Query: 226 IAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLM 285
++ A E Y R + +R L + G ++ ++L L + RS +LM
Sbjct: 194 TENVAMGVPMDAALEKMYERMPTNELRFFAIVLAIQQKTGGNLAEALGNLSAVLRSRKLM 253
Query: 286 EAEKKAASLGPKLTVPMIIFFLP---VLILVIIGPAILS 321
+ + KA S + II LP V ++ + PA ++
Sbjct: 254 KEKIKALS-AEAVASAFIIGCLPPGVVTLISVTSPAYMA 291
>gi|57641786|ref|YP_184264.1| hypothetical protein TK1851 [Thermococcus kodakarensis KOD1]
gi|57160110|dbj|BAD86040.1| hypothetical membrane protein, conserved [Thermococcus kodakarensis
KOD1]
Length = 305
Score = 39.7 bits (91), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 65/250 (26%), Positives = 107/250 (42%), Gaps = 38/250 (15%)
Query: 86 KLNLKAILVDENIVNKLRAAGFRSEYSL-------NILLVVRLVVPIIF-LILGIIWIFG 137
KLN+ LV ++ +L + Y L N L LV+ ++ LILG+ +
Sbjct: 6 KLNISGPLV--QLIERLLPGRYLKRYELFLYSANINFLAAEYLVISLLMGLILGLAFSI- 62
Query: 138 YDKLLEYPFQLRVGAVILI-GYVG--FCAPSVWISNLVQKRQSSIKRAWPDALDLLLICV 194
F GA+ I G++G F P W + KR I+++ PDA L +
Sbjct: 63 --------FSFLYGAIAFIAGFIGMAFLYP-YW---RLTKRIDEIEKSLPDAFFYLASSL 110
Query: 195 ESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCV-RN 253
+GIS +AL + G L+EE T+AE++ A F R + V
Sbjct: 111 RAGISFSEALEELTTAKFGA---LTEEFKRTVAEINKGRPTADALRAFALRNKRSQVLYR 167
Query: 254 ATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILV 313
+ +I++ G + D L + ++ R ++ E+KA+ T I+FF +
Sbjct: 168 SMMIVIEALERGAPMSDVLMYVANDVREILRIQQERKAS------TGMQIMFF--TITSG 219
Query: 314 IIGPAILSII 323
+GP IL I+
Sbjct: 220 FVGPLILGIV 229
>gi|325678292|ref|ZP_08157920.1| type II secretion system protein F domain protein [Ruminococcus
albus 8]
gi|324110055|gb|EGC04243.1| type II secretion system protein F domain protein [Ruminococcus
albus 8]
Length = 303
Score = 39.7 bits (91), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 81/177 (45%), Gaps = 15/177 (8%)
Query: 153 VILIGYVGFCAPSVWI----SNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVA 208
+++ VGF A I S+ KR++ I+R + D LD L V SG + +A
Sbjct: 93 IVICTAVGFGAVKFIIPLLESSFKIKRRNDIRRQFMDLLDALAASVASGSNAIKAFEAAK 152
Query: 209 EDI----GGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRY 264
ED+ G S+ + E L+ + +F+ + + +F R+ + + + Q S R
Sbjct: 153 EDLVLQYGEDSIIVQELTLILDGQKNFI-DISASLIDFGKRSGIKEIESFAQVFELSHRK 211
Query: 265 GTS----IGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGP 317
G I DS +L S+ E ME E K A+ +L + + + F+ V ++ + P
Sbjct: 212 GGDFSKVIRDSYEILYSKINIE--MEIETKIAATRNELNIMLAMPFILVGMMKSMSP 266
>gi|281356957|ref|ZP_06243447.1| Type II secretion system F domain protein [Victivallis vadensis
ATCC BAA-548]
gi|281316515|gb|EFB00539.1| Type II secretion system F domain protein [Victivallis vadensis
ATCC BAA-548]
Length = 294
Score = 39.7 bits (91), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 76/171 (44%), Gaps = 6/171 (3%)
Query: 144 YPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQA 203
Y ++ + + G V F P + + L +R DAL ++ +++G SI+QA
Sbjct: 84 YSWKWGIFVALFFGVVLFLLPRLVLRQLKVRRLEKFNFQLEDALGVISSSLKAGFSINQA 143
Query: 204 LRRVAEDIGGQSV-PLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSD 262
L VAE Q++ P+S E L I E+ + A EN R + + A++ +
Sbjct: 144 LEEVAE----QNIHPISVEFRLLIQEIRLGVPVEQALENMNRRLRSEDFELVATAILTAR 199
Query: 263 RYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILV 313
+ G + +L + S R ER+ + K A ++I PV +L+
Sbjct: 200 QTGGELTGTLERVASLIR-ERVRISNKVRALTALGRLQAILIALTPVALLI 249
>gi|300021858|ref|YP_003754469.1| type II secretion system protein F [Hyphomicrobium denitrificans
ATCC 51888]
gi|299523679|gb|ADJ22148.1| Type II secretion system F domain protein [Hyphomicrobium
denitrificans ATCC 51888]
Length = 332
Score = 39.7 bits (91), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 61/302 (20%), Positives = 134/302 (44%), Gaps = 28/302 (9%)
Query: 16 VAITTAVSIFSLIYAVVIPSL-GSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRT 74
V + A++ IYA+ P G E +KR++SV + R +++ + SSR ++
Sbjct: 14 VPLLAALAFAGGIYALAYPYFSGDREKDKRLESV-----VGRSRKVGGALSEIQSSRKKS 68
Query: 75 RDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIW 134
+ +L+ + N K + I LR +++ + + I+ + G+ +
Sbjct: 69 -VADTLKEMEDRQNAK-----KKITMGLRLERAGVKWTPRDFYIGSAIAGIV--LGGLCF 120
Query: 135 IFGYDKLLEYPFQLRVGAVILIGYVG-FCAPSVWISNLVQKRQSSIKRAWPDALDLLLIC 193
F L + A ++ +VG F P ++ L ++RQ+ +A+D+++
Sbjct: 121 NF---------LNLPIAATVVALFVGAFGIPRWVVAKLTKRRQAKFTSHLANAIDVVVRG 171
Query: 194 VESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRN 253
V+SG+ +++ L+ +A + PL+ E + + A + Y+R + VR
Sbjct: 172 VKSGLPLNECLQVIARE---SPEPLAGEFRSVMEQQRLGVPLADALDRMYDRMPLAEVRF 228
Query: 254 ATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILV 313
T + + G ++ ++L L R +++ + KA S K + M++ LP ++
Sbjct: 229 LTIVIAIQQQAGGNLSEALSNLSGVLRDRQMLALKVKALSAEAKASA-MVLASLPPGVMF 287
Query: 314 II 315
++
Sbjct: 288 MV 289
>gi|50841725|ref|YP_054952.1| hypothetical protein PPA0232 [Propionibacterium acnes KPA171202]
gi|50839327|gb|AAT81994.1| hypothetical protein PPA0232 [Propionibacterium acnes KPA171202]
Length = 236
Score = 39.7 bits (91), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 43/188 (22%), Positives = 86/188 (45%), Gaps = 18/188 (9%)
Query: 142 LEYPFQLRVGAVILIGYVGFCAPSVWISNLVQ---KRQSSIKRA--WPDALDLLLICVES 196
+ +PF G +L+G V + W S ++ R+ RA P+AL +L +E+
Sbjct: 57 VPWPFPAAAGLSVLVGTVMW-----WGSGRLESSGHRRMEQHRAAQLPEALLMLSSAMEA 111
Query: 197 GISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSF-LPNRQVAFENFYNRTQMDCVRNAT 255
G+ + A+ VAE + G P +E++ + L+ +P+ + + + ++ R+
Sbjct: 112 GLPLRSAVTTVAESLEG---PCAEDLRRLASSLAAGVPDSRA----WNDLASVEVWRDPA 164
Query: 256 QALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVII 315
Q + ++ G I + L ++ + + EKKA G P++ LP +LV +
Sbjct: 165 QDVSRAVDSGEGISELLSAHAAQLQVAAAEKTEKKARKAGVDAIGPLVCCHLPAFLLVGV 224
Query: 316 GPAILSII 323
P I ++
Sbjct: 225 VPIIAGMV 232
>gi|21673274|ref|NP_661339.1| TadB protein [Chlorobium tepidum TLS]
gi|21646363|gb|AAM71681.1| tadB protein [Chlorobium tepidum TLS]
Length = 305
Score = 39.7 bits (91), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 36/169 (21%), Positives = 78/169 (46%), Gaps = 6/169 (3%)
Query: 164 PSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEML 223
P +W+S +KR+ + + P+ALD + + +G S+ A+ + ++ PL E
Sbjct: 115 PVMWLSRKAKKRRMAFEAKLPEALDYISRSLRAGHSLSSAIGMIGKEF---PDPLGGEFK 171
Query: 224 LTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSER 283
E++F + AF + NR + + + AL+ G ++ + L L + R
Sbjct: 172 TVFDEMNFGIPFKEAFAHLSNRIRSNDISFFVIALMIQHETGGNLAELLGGLATTIRERF 231
Query: 284 LMEAEKKAASLGPKLTVPMI--IFFLPVLILVIIGP-AILSIIDTMKDH 329
+ + + S +++ ++ + F+ I+ +I P IL + +T + H
Sbjct: 232 KLRGKVRTLSSEGRISALVLGSMPFVFATIISLINPRYILPLFNTPQGH 280
>gi|119719714|ref|YP_920209.1| type II secretion system protein [Thermofilum pendens Hrk 5]
gi|119524834|gb|ABL78206.1| type II secretion system protein [Thermofilum pendens Hrk 5]
Length = 295
Score = 39.7 bits (91), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 70/153 (45%), Gaps = 6/153 (3%)
Query: 147 QLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRR 206
LRV ++ V F P ++ L + S++ P+ L V SG+++ +AL
Sbjct: 52 SLRVNVLVTFSLVLFTLPYAFVDYLNRSFTRSVESVLPELFKGLAEAVRSGLTLPEALSS 111
Query: 207 VAEDIGGQ-SVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYG 265
VAE +GG+ L + +LLT ++F Q A ++R ++ + L+ + G
Sbjct: 112 VAETLGGEVGKMLRQVVLLTEMGVTF----QEAIARAFSRYRLPSLDRLGSILLTAYESG 167
Query: 266 TSIGDSLRVLVSETRSERLMEAEKKAASLGPKL 298
+ D+L + R E E++A ++ P +
Sbjct: 168 GKVIDALETSAQIFGAIRSYE-EERATTINPHV 199
>gi|146276357|ref|YP_001166516.1| type II secretion system protein [Rhodobacter sphaeroides ATCC
17025]
gi|145554598|gb|ABP69211.1| type II secretion system protein [Rhodobacter sphaeroides ATCC
17025]
Length = 322
Score = 39.7 bits (91), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 49/105 (46%), Gaps = 15/105 (14%)
Query: 158 YVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVP 217
++G A VW++N +KR + I+ PDA++L++ + G A++ VA+++ P
Sbjct: 126 FMGVGAVYVWVNNKAKKRMALIEEQLPDAVELMVRSLRVGHPFSSAIQIVAKEVPD---P 182
Query: 218 LSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSD 262
L E + +A E Y R +C+R + + D
Sbjct: 183 LGTEFGV------------IADEAAYGRDVAECIRAFAERMDSQD 215
>gi|326388861|ref|ZP_08210443.1| type II secretion system protein [Novosphingobium nitrogenifigens
DSM 19370]
gi|326206461|gb|EGD57296.1| type II secretion system protein [Novosphingobium nitrogenifigens
DSM 19370]
Length = 323
Score = 39.7 bits (91), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 46/196 (23%), Positives = 84/196 (42%), Gaps = 23/196 (11%)
Query: 125 IIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWP 184
++ L G +WI +L + +GA + P +S + KR ++ +P
Sbjct: 103 LVILFGGFVWIKSGSLVLGLALGIAIGAGL---------PHFAVSWAINKRINNFITRFP 153
Query: 185 DALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYN 244
DAL+LL+ + SG+ I + L VA ++ G P+SEE + + + A + +
Sbjct: 154 DALELLVRGLRSGLPISETLVVVANELPG---PVSEEFKIVTDRIRLGRTMEDALQETAD 210
Query: 245 RTQMD-----CVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLT 299
R + C+ A Q G ++ ++L L R M+ + KA S K +
Sbjct: 211 RLDLAEFSFFCITLAIQ-----RETGGNLAETLANLADVLRKRAQMKLKIKAMSSESKAS 265
Query: 300 VPMIIFFLPVLILVII 315
I+ LP ++ +I
Sbjct: 266 A-YIVGSLPFIVFALI 280
>gi|325678255|ref|ZP_08157883.1| type II secretion system protein F domain protein [Ruminococcus
albus 8]
gi|324110018|gb|EGC04206.1| type II secretion system protein F domain protein [Ruminococcus
albus 8]
Length = 290
Score = 39.7 bits (91), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 33/149 (22%), Positives = 73/149 (48%), Gaps = 12/149 (8%)
Query: 172 VQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSF 231
++K + R +P+A+ + + V G+ + +A ++VA PL +M + +++
Sbjct: 141 IEKMNETYMRDFPNAVSTIALLVNGGMFLREAWKQVAIS---SDEPLYVQMRGVVDDMNN 197
Query: 232 LPNRQVAFENFYNRTQMDCVRNATQALIQS-DRYGTSIGDSL----RVLVSETRSERLME 286
+ A F NR +R + + Q+ + GT + D+L +L++E + L +
Sbjct: 198 GVSEIDALFRFANRCSTKEIRKFSTTITQAIESDGTHLADTLIKQADLLLNEKKQMVLQQ 257
Query: 287 AEKKAASLGPKLTVPMIIFFLPVLILVII 315
EK + KL P+ + F+ VL+++++
Sbjct: 258 GEKAS----NKLMFPIGLIFIGVLVMIMV 282
>gi|171921005|gb|ACB59188.1| TadB [Actinobacillus suis ATCC 33415]
Length = 295
Score = 39.7 bits (91), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 72/168 (42%), Gaps = 19/168 (11%)
Query: 153 VILIGYVGFCAPSVWISNLVQKRQSSI-KRAWPDALDLLLICVESGISIDQALRRVAEDI 211
V LIG++ +VW L Q+R + +P+ + +L SGIS+ QAL R +DI
Sbjct: 99 VELIGFI----VAVW--KLGQRRNKKLFNEKFPEVIQVLNSATSSGISLLQALERCGKDI 152
Query: 212 GGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDS 271
G P+ EE + L+ + F + Y+R I R S G
Sbjct: 153 TG---PIGEEFSIIYKRLARGEDAMAVFHDSYSRYPYK----EFYFFISIIRTNLSRGGQ 205
Query: 272 LRVLVSE----TRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVII 315
+R ++S ME +KKA + +++ ++ F PV + +
Sbjct: 206 MREVISRLGRAIADSNKMEQKKKAMTSEARMSAAIVACF-PVAFFLFM 252
>gi|227494419|ref|ZP_03924735.1| conserved hypothetical protein [Actinomyces coleocanis DSM 15436]
gi|226832153|gb|EEH64536.1| conserved hypothetical protein [Actinomyces coleocanis DSM 15436]
Length = 351
Score = 39.7 bits (91), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 50/204 (24%), Positives = 93/204 (45%), Gaps = 13/204 (6%)
Query: 119 VRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVG-FCAPSVWISNLVQKRQS 177
VRL+ + + LG+ W+ G D L + G ++ + G + A VW+ LV K
Sbjct: 148 VRLLAALPAVGLGLAWLLGAD-LPAFITGTFWGWLVAVAGGGLWVAGFVWVRRLVAKFHE 206
Query: 178 SIKRAWPD---ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPN 234
KR D A+ L C+ +G+++ ++L +A G ++ + + L A+ S +
Sbjct: 207 Q-KRENVDPVVAVRLFAACLVAGLAVPRSLEVIAAGCGYPNLAVVSRLFLLGADSSEVT- 264
Query: 235 RQVAFENFYNRTQMDCVRNATQ-ALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAAS 293
E + D V A++ + G+ +L ++V R ERL+ + +
Sbjct: 265 -----EFLSSVAASDVVTTHLGLAILTAWMRGSDPLATLELVVQRLRRERLLGVQVEIQK 319
Query: 294 LGPKLTVPMIIFFLPVLILVIIGP 317
LG L +P+ + FLP +L+ + P
Sbjct: 320 LGVWLALPLGLCFLPAFVLLGVVP 343
>gi|227494921|ref|ZP_03925237.1| type II secretion system protein [Actinomyces coleocanis DSM 15436]
gi|226831373|gb|EEH63756.1| type II secretion system protein [Actinomyces coleocanis DSM 15436]
Length = 291
Score = 39.3 bits (90), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 28/47 (59%)
Query: 164 PSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAED 210
P W+ +QKRQ AWPD +D LL V +G+S+ +A+ +++
Sbjct: 98 PWGWLRARLQKRQQLFAGAWPDIVDSLLTAVRAGVSLPEAVVQLSHS 144
>gi|257388762|ref|YP_003178535.1| type II secretion system protein [Halomicrobium mukohataei DSM
12286]
gi|257171069|gb|ACV48828.1| type II secretion system protein [Halomicrobium mukohataei DSM
12286]
Length = 807
Score = 39.3 bits (90), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 70/147 (47%), Gaps = 9/147 (6%)
Query: 170 NLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRV-AEDIGGQSVPLSEEMLLTIAE 228
L +R I+ + P+ L+ L E+G+++ ++L RV D+G LSEE+ A+
Sbjct: 466 ELYTRRIRRIEASTPELLERLASLNEAGMTVVESLERVRGTDVGA----LSEEVDRIWAD 521
Query: 229 LSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAE 288
++ N + A F R + + LI + R +G LR+ + RS+ + +
Sbjct: 522 VTMGANVEDALTRFGRRIRTTSMSRVVTLLINAMRSSGKMGPILRIAADQARSDYRLRRQ 581
Query: 289 KKAASLGPKLTVPMIIFFLPVLILVII 315
++ LT ++I+ ++ LVII
Sbjct: 582 RRQ----EMLTYLVVIYISFLVFLVII 604
>gi|239917280|ref|YP_002956838.1| Flp pilus assembly protein TadC [Micrococcus luteus NCTC 2665]
gi|281414242|ref|ZP_06245984.1| Flp pilus assembly protein TadC [Micrococcus luteus NCTC 2665]
gi|239838487|gb|ACS30284.1| Flp pilus assembly protein TadC [Micrococcus luteus NCTC 2665]
Length = 313
Score = 39.3 bits (90), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 62/140 (44%), Gaps = 11/140 (7%)
Query: 184 PDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFY 243
P +L + V +G S AL R+A G+ L+ E T+A++ + A +
Sbjct: 174 PSVAELFALSVGAGESAAGALERIAGTARGE---LAGEFRTTLADMRAGASLSAALKAMG 230
Query: 244 NRTQMDCV-RNATQALIQSDRYGTSIGDSLRVLVSETRS---ERLMEAEKKAASLGPKLT 299
R Q+ V R LI DR GT + D LR + R LMEA + ++
Sbjct: 231 RRVQLAPVERFIGGVLIALDR-GTPLADVLRAQAQDVREMGRRELMEAAGRKEI---QMM 286
Query: 300 VPMIIFFLPVLILVIIGPAI 319
VP++ LP+ ++ + P I
Sbjct: 287 VPLVFGILPLTVIFAVFPGI 306
>gi|320094936|ref|ZP_08026662.1| hypothetical protein HMPREF9005_1274 [Actinomyces sp. oral taxon
178 str. F0338]
gi|319978135|gb|EFW09752.1| hypothetical protein HMPREF9005_1274 [Actinomyces sp. oral taxon
178 str. F0338]
Length = 165
Score = 39.3 bits (90), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 62/137 (45%), Gaps = 11/137 (8%)
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
A DL+L + G SI QAL + +G S+ ++ EL A++
Sbjct: 32 ACDLVLAGLRCGASIPQALAALGGAVG------SDGLVRISRELRLGAGWAAAWDPAPPG 85
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
T++ +R +A + G S LR ++TR R+ +A+K A LG L P+
Sbjct: 86 TEL--LREGLEA---AWLQGVSPEAQLRRAAAQTRRHRISDAKKAAEELGISLVAPLGAL 140
Query: 306 FLPVLILVIIGPAILSI 322
LP +L+ + P ++ +
Sbjct: 141 LLPAFVLLGLVPIVIHM 157
>gi|117929187|ref|YP_873738.1| type II secretion system protein [Acidothermus cellulolyticus 11B]
gi|117649650|gb|ABK53752.1| type II secretion system protein [Acidothermus cellulolyticus 11B]
Length = 203
Score = 39.3 bits (90), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 64/146 (43%), Gaps = 11/146 (7%)
Query: 184 PDALDLLLICVESGISIDQALRRVAEDIGGQSV--PLSE-EMLLTIAELSFLPNRQVAFE 240
P A DLL C+E+G++ +AL V E +G S+ PL L + + +V E
Sbjct: 63 PLACDLLAACLETGVTSRRALELVVEALGRDSLNTPLPAVSSALRLGASAVQAWAEVPAE 122
Query: 241 NFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV 300
+ +A Q++ G ++ +L L E R A + A G ++ +
Sbjct: 123 LGWT--------EVARAFGQAENSGLALAGTLTRLADERRRTVRAWAAQATARAGVRMAL 174
Query: 301 PMIIFFLPVLILVIIGPAILSIIDTM 326
P+ + FLP +LV + P I ++
Sbjct: 175 PLGVCFLPAFLLVGVLPVIFGFAHSL 200
>gi|119963307|ref|YP_949041.1| type II secretion system protein F [Arthrobacter aurescens TC1]
gi|119950166|gb|ABM09077.1| putative bacterial type II secretion system protein F domain
[Arthrobacter aurescens TC1]
Length = 305
Score = 39.3 bits (90), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 68/139 (48%), Gaps = 5/139 (3%)
Query: 187 LDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRT 246
L+L+ +++G I +AL +A+ S P+ + + +A L+ + + A+ R
Sbjct: 171 LELVASMLDAGAGIGRALELIAKC---ASPPIRQSLRPVVAALAIGADWETAWRT-PTRQ 226
Query: 247 QMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFF 306
+ VR AL + G L + R E+ AEK+AA+LG KL VP+ +
Sbjct: 227 PPEVVR-LKDALAFAALTGAPSASILYAQAARERREQFRAAEKRAAALGVKLVVPLGLCS 285
Query: 307 LPVLILVIIGPAILSIIDT 325
LP I + I P +++++ +
Sbjct: 286 LPAFICLGIVPVLIAMLPS 304
>gi|309810746|ref|ZP_07704553.1| type II secretion system F domain protein [Dermacoccus sp.
Ellin185]
gi|308435283|gb|EFP59108.1| type II secretion system F domain protein [Dermacoccus sp.
Ellin185]
Length = 295
Score = 39.3 bits (90), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 35/155 (22%), Positives = 65/155 (41%), Gaps = 3/155 (1%)
Query: 168 ISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIA 227
++ L ++R++ + +P D+L + V +G AL V G PL+EE+ +
Sbjct: 140 LTRLAERREARMIVEFPAIADMLALAVAAGQGPLGALEHVTTLCRG---PLAEELRTALE 196
Query: 228 ELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEA 287
+ A RT + V + +I + GT + D LR + R E
Sbjct: 197 QARAGTPLSDALAGVARRTSVVSVARFVEGVIVALERGTPLADVLRAQAQDARESVRTEL 256
Query: 288 EKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
+KA + P++ LPV +L + P + ++
Sbjct: 257 VEKAGRKEVVMMAPVVFLVLPVTVLFAVYPGLAAL 291
>gi|291333378|gb|ADD93083.1| hypothetical protein [uncultured archaeon MedDCM-OCT-S05-C205]
Length = 529
Score = 39.3 bits (90), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 37/160 (23%), Positives = 76/160 (47%), Gaps = 8/160 (5%)
Query: 164 PSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEML 223
P+ + V+ ++ ++ +PD L L + G+S+ A++ +A G L++E+
Sbjct: 265 PASYYWERVENAKNEVEEKFPDFLRDLAEYWKGGLSMTVAIQTLATSEYGA---LNDEVK 321
Query: 224 LTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSER 283
+LS+ + F +R V+ A + ++DR G I D L +++R +
Sbjct: 322 KMSDQLSWGIKFSDVIKQFADRVGTPLVQRAIALIAEADRAGGKISDILVTAANDSRELK 381
Query: 284 LMEAEKKAASLGPKLTVPMIIFFLPVLILVIIG----PAI 319
+E E+K A +G + V +F+ + ++V + PAI
Sbjct: 382 FLEGERKRA-IGSYIAVIWTSYFVFLGVIVTLAVVFIPAI 420
>gi|92116009|ref|YP_575738.1| type II secretion system protein [Nitrobacter hamburgensis X14]
gi|91798903|gb|ABE61278.1| type II secretion system protein [Nitrobacter hamburgensis X14]
Length = 324
Score = 39.3 bits (90), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 63/302 (20%), Positives = 119/302 (39%), Gaps = 27/302 (8%)
Query: 14 LAVAITTAVSIFSLIYAVVIPSL-GSGELEKRMKSVAVEREILRKQQITSLQKDSASSRL 72
LA+A A ++ + + + P+L G + EKR + A +R Q D A
Sbjct: 6 LAMAFMAATAVGGVAWVFLYPALSGEAKAEKRRSAFARTAPAVR-------QVDRAQRSR 58
Query: 73 RTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGI 132
R + SLR ++ D I R A +S L+V + + + +
Sbjct: 59 REQIEGSLREIEQRQKR-----DSKITLNDRIAQAGLSWSKEKFLIVSGIFGAVCFAVPM 113
Query: 133 IWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLI 192
G + AV L GF P + L +R+ + RA PDA+D+++
Sbjct: 114 FSGAG-----------PIAAVGLAFAAGFGLPRWLLGFLKTRREKAFLRALPDAVDVIVR 162
Query: 193 CVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVR 252
+++G+ + ++++ VA D PL E I + A Y R +
Sbjct: 163 GIKAGLPLFESIKVVAAD---SPEPLKSEFAAIIETQAIGMPLGEACARLYERMPVPEAN 219
Query: 253 NATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLIL 312
+ + G ++ ++L L R + M + +A S+ K + +I PV+++
Sbjct: 220 FFGIVIAIQQKSGGNLSEALGNLSKVLRDRKKMAEKIQAMSMEAKASAAIIGSLPPVVMM 279
Query: 313 VI 314
++
Sbjct: 280 LV 281
>gi|315656392|ref|ZP_07909281.1| type II secretion system protein [Mobiluncus curtisii subsp.
holmesii ATCC 35242]
gi|315492951|gb|EFU82553.1| type II secretion system protein [Mobiluncus curtisii subsp.
holmesii ATCC 35242]
Length = 303
Score = 39.3 bits (90), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 61/264 (23%), Positives = 115/264 (43%), Gaps = 42/264 (15%)
Query: 70 SRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLI 129
+R T S S + ++L L + D + + R + R SL +L VV
Sbjct: 69 TRFLTFISPSKESVERRLELAGLPRD---LCEFRRSQLRWAASLGVLAVV---------- 115
Query: 130 LGIIWIFGYDKLLEYPFQLRVGAVILIGYV--GFCAPSVWISNLVQKRQSSIKRAWPDAL 187
L II +G + L P V+L +V G P ++ ++RQ + + PD +
Sbjct: 116 LSIIGFWG--RTLPIPGAF----VMLTCFVLAGLLVPDYRLTGAARRRQLRLNQELPDVI 169
Query: 188 DLLLICVESGISIDQALRRVA---EDIGGQSVPLSEEMLLTIAEL--SFLPNRQVAFENF 242
+LL + V +G + AL RV+ + GQ + E +L A+ S P+ A
Sbjct: 170 ELLALAVGAGEPLYGALHRVSARCAGVAGQEL----EKILAAADNGDSLAPSLTAA---- 221
Query: 243 YNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSET----RSERLMEAEKKAASLGPKL 298
R + + + A++ + G+ + LR V+++ R++ L E KK +
Sbjct: 222 RARNDSEILAHLIDAIVSALERGSPLAGVLRSQVADSRAVARTQLLTEGGKKEV----LM 277
Query: 299 TVPMIIFFLPVLILVIIGPAILSI 322
VP++ LP+ ++ + P ++++
Sbjct: 278 MVPVVFLILPLTVVFALYPGLVAL 301
>gi|323529157|ref|YP_004231309.1| Type II secretion system F domain-containing protein [Burkholderia
sp. CCGE1001]
gi|323386159|gb|ADX58249.1| Type II secretion system F domain protein [Burkholderia sp.
CCGE1001]
Length = 282
Score = 39.3 bits (90), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 30/128 (23%), Positives = 57/128 (44%), Gaps = 3/128 (2%)
Query: 164 PSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEML 223
P + + +KR +I++ PDAL ++ + +G S AL V + P+S+E
Sbjct: 92 PRKYFKRMHKKRVEAIEKQLPDALLMMSGALRAGASFPTALEAVVHE---TPPPISQEFD 148
Query: 224 LTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSER 283
L + E+ + +A N R + T A+ + G ++ ++L + R +
Sbjct: 149 LLMREIRLGIDLDIAMRNVEKRIPIPDFLMMTAAVTIAREVGGNLAEALESVARTLREKL 208
Query: 284 LMEAEKKA 291
ME + KA
Sbjct: 209 TMEGKIKA 216
>gi|328943879|ref|ZP_08241344.1| hypothetical protein HMPREF0091_10569 [Atopobium vaginae DSM 15829]
gi|327491848|gb|EGF23622.1| hypothetical protein HMPREF0091_10569 [Atopobium vaginae DSM 15829]
Length = 153
Score = 38.9 bits (89), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 31/143 (21%), Positives = 66/143 (46%), Gaps = 2/143 (1%)
Query: 181 RAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFE 240
+ P LD++ + + SG+S + +L G L + LL L + +R+ A +
Sbjct: 13 QELPTLLDVITLGLSSGLSFEASLDLYCMHYNGVLAQLFQRQLLQY-RLGVI-SRRAALQ 70
Query: 241 NFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV 300
+ + +D + T +IQ+ G+ + L R + E E++ + K+ +
Sbjct: 71 DIADDLHIDALTRFTSTVIQALECGSPLVGVLSDQAQSIRDAQRFELEEEIEKIPVKMLI 130
Query: 301 PMIIFFLPVLILVIIGPAILSII 323
PM + +P +++ I+GP + S +
Sbjct: 131 PMGVLIVPAMLISIMGPLLASAV 153
>gi|28572729|ref|NP_789509.1| hypothetical protein TW581 [Tropheryma whipplei TW08/27]
gi|28410862|emb|CAD67247.1| putative membrane protein [Tropheryma whipplei TW08/27]
Length = 298
Score = 38.9 bits (89), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 44/202 (21%), Positives = 81/202 (40%), Gaps = 22/202 (10%)
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNL----------VQKRQS 177
L+ G+ W+ + L G V ++ G AP+V+ + V+KR+
Sbjct: 105 LLTGVFWVL-------FCLLLFSGQVNIV--FGLLAPAVFAGSFWCIENNLRRYVKKRKQ 155
Query: 178 SIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQV 237
I P A + L + V +G + A++R+ G+ S E+ + +S +
Sbjct: 156 KILNEMPSAFEFLSLSVSAGEGVLDAIKRICFISKGE---FSIELKKVLIGVSSGDTLER 212
Query: 238 AFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPK 297
+ + + + A +I + GT + D L E R+ + ++A
Sbjct: 213 CLKRMAAKLDIVSIDRAVSQIITAIERGTPLADILIKQAKEARNATRVALIEQAGKKEIA 272
Query: 298 LTVPMIIFFLPVLILVIIGPAI 319
+ P++ F LPV IL I P I
Sbjct: 273 MMFPLVFFILPVTILFAIFPGI 294
>gi|156744076|ref|YP_001434205.1| type II secretion system protein [Roseiflexus castenholzii DSM
13941]
gi|156235404|gb|ABU60187.1| type II secretion system protein [Roseiflexus castenholzii DSM
13941]
Length = 323
Score = 38.9 bits (89), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 56/128 (43%), Gaps = 10/128 (7%)
Query: 159 VGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPL 218
+G A S W+ Q+R+ + P+ LDL+ + G S+ Q+L VA D+ P+
Sbjct: 128 IGHLALSFWMRIRRQRRKQAFSDQLPETLDLITASMRGGFSLVQSLANVAGDV---QEPM 184
Query: 219 SEEMLLTIAELSFLPNRQVAFENFYNR---TQMDCVRNATQALIQSDRYGTSIGDSLRVL 275
E+ E+ + A +N R T +D V A + R G ++G L
Sbjct: 185 RTELRRVFQEVQLGLSITQALDNLVQRMESTDLDLVVTAIKI---HARVGGNLGQILEN- 240
Query: 276 VSETRSER 283
+S T ER
Sbjct: 241 ISTTMRER 248
>gi|296158516|ref|ZP_06841346.1| Type II secretion system F domain protein [Burkholderia sp. Ch1-1]
gi|295891084|gb|EFG70872.1| Type II secretion system F domain protein [Burkholderia sp. Ch1-1]
Length = 282
Score = 38.9 bits (89), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 28/133 (21%), Positives = 61/133 (45%), Gaps = 3/133 (2%)
Query: 159 VGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPL 218
+ P ++ + +KR ++++ PDAL ++ + +G S AL V + + P+
Sbjct: 87 IAMMLPKKYLKRMRKKRIEALEKQLPDALLMMSGALRAGASFPSALEAVVHE---TTPPI 143
Query: 219 SEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSE 278
S+E L + E+ + +A N R + + T A+ + G ++ ++L +
Sbjct: 144 SQEFDLLMREIRLGIDLDIAMRNVEKRIPIPDLLMMTAAVTIAREVGGNLAEALESVART 203
Query: 279 TRSERLMEAEKKA 291
R + ME + +A
Sbjct: 204 LREKLQMEGKIRA 216
>gi|229825135|ref|ZP_04451204.1| hypothetical protein GCWU000182_00486 [Abiotrophia defectiva ATCC
49176]
gi|229790507|gb|EEP26621.1| hypothetical protein GCWU000182_00486 [Abiotrophia defectiva ATCC
49176]
Length = 404
Score = 38.9 bits (89), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 36/155 (23%), Positives = 77/155 (49%), Gaps = 9/155 (5%)
Query: 172 VQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSF 231
++ R+ +K + + + +I + +G+S+ +++ LSEE+ LT+ E +
Sbjct: 255 IKDREEELKNGYTEFVGRFVILLGAGLSVSAIWKKLEAGFASNK-SLSEEIRLTLWETAN 313
Query: 232 LPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKA 291
+ A+ENF R + QS + G+ G L L +E+ + + E +A
Sbjct: 314 GKTEREAYENFGKRIGGTQYAKFVSVINQSLKLGS--GQLLARLEAESEA-AMFERRNRA 370
Query: 292 ASLGP----KLTVPMIIFFLPVLILVIIGPAILSI 322
+G KL +PM++ L +++L+I+ PA++++
Sbjct: 371 KVMGEVADTKLLLPMML-QLVLIMLIIMVPALMAV 404
>gi|308176985|ref|YP_003916391.1| type II secretion system protein F [Arthrobacter arilaitensis
Re117]
gi|307744448|emb|CBT75420.1| putative type II secretion system protein F [Arthrobacter
arilaitensis Re117]
Length = 283
Score = 38.9 bits (89), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 65/139 (46%), Gaps = 13/139 (9%)
Query: 161 FC-----APSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQS 215
FC AP V++ + KRQ++++ WP+ +D L + +G+S+ +AL ++A +G Q
Sbjct: 80 FCIFGSFAPWVYLRHQAAKRQAALQEQWPEVVDHLRSAIRAGLSLPEALSQLAM-VGPQI 138
Query: 216 V-PLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNA--TQALIQSDRYGTSIGDSL 272
+ PL + L + N VA + R D V + T I + GT +G +L
Sbjct: 139 LRPLFRDFAL---DYRATANFAVALDQLGERLA-DPVADKILTTLRITREVGGTDLGHTL 194
Query: 273 RVLVSETRSERLMEAEKKA 291
L + R + E A
Sbjct: 195 TTLSAFLRDDVRTRGELAA 213
>gi|308234328|ref|ZP_07665065.1| Type II secretion system F domain protein [Atopobium vaginae DSM
15829]
Length = 144
Score = 38.9 bits (89), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 31/143 (21%), Positives = 66/143 (46%), Gaps = 2/143 (1%)
Query: 181 RAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFE 240
+ P LD++ + + SG+S + +L G L + LL L + +R+ A +
Sbjct: 4 QELPTLLDVITLGLSSGLSFEASLDLYCMHYNGVLAQLFQRQLLQY-RLGVI-SRRAALQ 61
Query: 241 NFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV 300
+ + +D + T +IQ+ G+ + L R + E E++ + K+ +
Sbjct: 62 DIADDLHIDALTRFTSTVIQALECGSPLVGVLSDQAQSIRDAQRFELEEEIEKIPVKMLI 121
Query: 301 PMIIFFLPVLILVIIGPAILSII 323
PM + +P +++ I+GP + S +
Sbjct: 122 PMGVLIVPAMLISIMGPLLASAV 144
>gi|83950070|ref|ZP_00958803.1| type II/IV secretion system protein, TadC subfamily protein
[Roseovarius nubinhibens ISM]
gi|83837969|gb|EAP77265.1| type II/IV secretion system protein, TadC subfamily protein
[Roseovarius nubinhibens ISM]
Length = 322
Score = 38.9 bits (89), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 57/123 (46%), Gaps = 3/123 (2%)
Query: 159 VGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPL 218
+G A +WIS+ +KR + ++ PDA++L++ + G A+ VA ++ S PL
Sbjct: 127 IGVSAIFMWISSKAKKRTARLEEQLPDAIELMVRSLRVGHPFSAAISIVANEV---SDPL 183
Query: 219 SEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSE 278
+ E + E ++ A ++ R M +R A+ + G ++ + L L
Sbjct: 184 ATEFGIIADEAAYGRELGEALKDMAERLDMQDLRFLAVAVTIQQQSGGNLAEILDGLSKV 243
Query: 279 TRS 281
RS
Sbjct: 244 IRS 246
>gi|55377349|ref|YP_135199.1| hypothetical protein rrnAC0464 [Haloarcula marismortui ATCC 43049]
gi|55230074|gb|AAV45493.1| unknown [Haloarcula marismortui ATCC 43049]
Length = 815
Score = 38.9 bits (89), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 52/118 (44%), Gaps = 5/118 (4%)
Query: 163 APSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRV-AEDIGGQSVPLSEE 221
P + + +R S I+ A PD L+ L E+G+++ ++LRRV DIG L+EE
Sbjct: 462 GPFALVRFIYTQRLSRIEDATPDLLERLASLNEAGMTVVESLRRVRGSDIG----VLTEE 517
Query: 222 MLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSET 279
M A++ N A F R Q V L + +G R+ +++
Sbjct: 518 MHRIWADIRMGANVDDALVRFGRRVQTTAVTRIVTLLTHAMHASGQLGPVFRIAATQS 575
>gi|187927683|ref|YP_001898170.1| type II secretion system protein [Ralstonia pickettii 12J]
gi|187724573|gb|ACD25738.1| type II secretion system protein [Ralstonia pickettii 12J]
Length = 325
Score = 38.9 bits (89), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 83/180 (46%), Gaps = 22/180 (12%)
Query: 148 LRVGAVILI--GYVGFCA------PSVWISNLVQKRQSSIKRAWPDALDLLLICVESGIS 199
L VGA++ + G V CA P + I++ +KR ++ PDA+D++ + +G S
Sbjct: 111 LAVGALLPVPFGIVTACALLMSALPVLHIASQRRKRLKKLEAQLPDAVDMIARALRAGHS 170
Query: 200 IDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQA-L 258
AL V ++I P+ E T E+++ + A N R ++ +R A L
Sbjct: 171 FASALGMVGQEI---KEPMGPEFHTTFEEINYGVSLDEALTNLAKRVPVNDLRYFVIAVL 227
Query: 259 IQSDRYGT------SIGDSLRVLVSETRSERLMEAEKKAAS--LG--PKLTVPMIIFFLP 308
IQ + G +IG+ +R + R++ AE + ++ LG P T MI+ P
Sbjct: 228 IQRESGGNLAEILDTIGNLVRERLKLYDKIRVLSAEGRLSAWILGLLPFCTAGMILLVNP 287
>gi|163757631|ref|ZP_02164720.1| hypothetical protein HPDFL43_19512 [Hoeflea phototrophica DFL-43]
gi|162285133|gb|EDQ35415.1| hypothetical protein HPDFL43_19512 [Hoeflea phototrophica DFL-43]
Length = 336
Score = 38.9 bits (89), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 68/306 (22%), Positives = 137/306 (44%), Gaps = 27/306 (8%)
Query: 19 TTAVSIFSLIYAVVIPSLGSGELEKRMKS-VAVEREILRKQQITSLQKDSASSRLR---- 73
T V+I L A+ +LG G L R++ E + R + + + ++++R R
Sbjct: 6 TVVVAIIGLA-ALSAGALGYGVLYSRIEGDRKAENRVKRVKAAETDRSKASAARDRLAEA 64
Query: 74 TRDSKSLRNFVKKLNLKAILVDEN----IVNKLRAAGFRSEYSLNILLVVRLVVPIIFLI 129
+ KS+++ +K L+ K D+ + +K+ AG +SL ++ LV + L+
Sbjct: 65 NKRRKSVQDSLKTLDEKNKENDKKTSPPLKDKIGQAGL--PFSLGQFYMISLV---LGLV 119
Query: 130 LGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDL 189
G++ Y L V A I I + G P + L +R + +P+ALD+
Sbjct: 120 AGLVGFVAYGSPL-------VAAGIAIIF-GAGVPRWIVGYLRNRRLKAFLSEFPNALDI 171
Query: 190 LLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMD 249
++ ++SG+ ++ A+R ++ + GQ P+ E + N A Y+R +
Sbjct: 172 MVRSIKSGLPLNDAIRMISAE--GQE-PVRTEFKRIVDSQQMGMNIPEACARLYSRIPLS 228
Query: 250 CVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPV 309
+ + + G ++ ++L L R + M+A+ A S+ K + II LP
Sbjct: 229 EANFFSIVIAIQAQAGGNLSEALGNLSRVLRDRKKMKAKINALSMEAKASAA-IIGALPF 287
Query: 310 LILVII 315
++ +++
Sbjct: 288 IVALLV 293
>gi|326390769|ref|ZP_08212322.1| Type II secretion system F domain [Thermoanaerobacter ethanolicus
JW 200]
gi|325993163|gb|EGD51602.1| Type II secretion system F domain [Thermoanaerobacter ethanolicus
JW 200]
Length = 255
Score = 38.9 bits (89), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/110 (20%), Positives = 49/110 (44%), Gaps = 2/110 (1%)
Query: 159 VGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPL 218
+GF ++IS++ + RQ +R P+ +DL + + + ++ A+ Q+ +
Sbjct: 88 LGFFGLDIYISSVKKDRQEKFRREMPEIVDLFELGAAADVPLEDIFLITAQS--AQAKEV 145
Query: 219 SEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSI 268
+ AE ++VA + F N + AL+Q +R G ++
Sbjct: 146 RNALTKLAAEYIMTKEKEVALKRFINEVNLPEANVLAMALLQGERTGRTL 195
>gi|86748903|ref|YP_485399.1| type II secretion system protein [Rhodopseudomonas palustris HaA2]
gi|86571931|gb|ABD06488.1| type II secretion system protein [Rhodopseudomonas palustris HaA2]
Length = 324
Score = 38.9 bits (89), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 65/304 (21%), Positives = 124/304 (40%), Gaps = 31/304 (10%)
Query: 14 LAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQK---DSASS 70
LA+ AVS+ L + + P L SGE + + +V R +QI Q+ +
Sbjct: 6 LALGFLAAVSVGGLAWVFIYPLL-SGEKQAEQRRTSVARTTPAVRQIEKSQRSRREQVEG 64
Query: 71 RLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLIL 130
LR +++S + K ++L KL AG +++ N + V + +
Sbjct: 65 SLREIEARSQKQ--KNVSLG---------TKLTQAGL--DWTPNKFIGVSAGLGTVAFAT 111
Query: 131 GIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLL 190
+I G + AV L GF P + L ++R+ A PDA+D++
Sbjct: 112 TMILGGGL-----------LAAVGLAFAAGFGLPRWVLGFLKKRREKKFINALPDAVDVI 160
Query: 191 LICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDC 250
+ +++G+ + +L+ VA D PL E I + A Y+R +
Sbjct: 161 VRGIKAGLPLFDSLKVVAAD---SPEPLKSEFNAIIETQAIGMPLGEACARLYDRMPLPE 217
Query: 251 VRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVL 310
+ + G ++ ++L L R + M + +A S+ K + +I P++
Sbjct: 218 ANFFGIVISIQQKSGGNLSEALGNLSKVLRDRKKMAEKIQAMSMEAKASAAIIGSLPPIV 277
Query: 311 ILVI 314
+L++
Sbjct: 278 MLLV 281
>gi|294140781|ref|YP_003556759.1| Flp pilus assembly protein TadB [Shewanella violacea DSS12]
gi|293327250|dbj|BAJ01981.1| Flp pilus assembly protein TadB [Shewanella violacea DSS12]
Length = 325
Score = 38.9 bits (89), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 31/144 (21%), Positives = 68/144 (47%), Gaps = 6/144 (4%)
Query: 173 QKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFL 232
KR +I+ +PD LD++ +++G S A++ E++ G PL++E L +++
Sbjct: 144 NKRMDTIEADFPDGLDVIRRALQAGYSFTDAIKLATEELEG---PLAKEFKLMFVNINYT 200
Query: 233 PNRQVAFENFYNRT-QMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKA 291
+ + A F R + + A+ ++Q + G ++ +++ L R K
Sbjct: 201 KDIKRALLGFIQRVPSVSALAFASAVMVQRET-GGNLAENIENLTRVIRQRFKFRRRVKT 259
Query: 292 ASLGPKLTVPMIIFFLPVLILVII 315
S +L+ ++I LP ++ +I
Sbjct: 260 LSAEGRLSAWILI-LLPFVLFAVI 282
>gi|320531262|ref|ZP_08032241.1| type II secretion system F domain protein [Actinomyces sp. oral
taxon 171 str. F0337]
gi|320136529|gb|EFW28498.1| type II secretion system F domain protein [Actinomyces sp. oral
taxon 171 str. F0337]
Length = 317
Score = 38.9 bits (89), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 72/165 (43%), Gaps = 13/165 (7%)
Query: 160 GFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLS 219
G A W+S V +R S I+ PD ++LL + V +G A+ RV G L
Sbjct: 154 GAAARDWWLSRAVARRLSRIEAQLPDIVELLALAVGAGQGPVPAIERVVALGRGD---LI 210
Query: 220 EEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSET 279
+E+ T+ ++ A + R V +A+I + GT + D LR ++
Sbjct: 211 DELGATLTDIRSGTVLSTALDRMERRVGSVHVTRLCEAIIVALERGTPLADVLRSQATDV 270
Query: 280 RS---ERLME--AEKKAASLGPKLTVPMIIFFLPVLILVIIGPAI 319
R + LME ++ A + VP++ LP+ ++ + P +
Sbjct: 271 REAARQDLMEEGGRREIAQM-----VPVVFLVLPITVVFALFPGL 310
>gi|301165544|emb|CBW25115.1| putative pilus assembly-related protein [Bacteriovorax marinus SJ]
Length = 296
Score = 38.9 bits (89), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 50/98 (51%), Gaps = 17/98 (17%)
Query: 126 IFLILGII--WIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAW 183
+FL+ G++ W+ G+ L + G++GF P I+ LV +R ++
Sbjct: 78 MFLLFGVLGQWVIGFILGL------------IFGFIGFKVPKPLINYLVDRRINAYSAQM 125
Query: 184 PDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEE 221
DAL LL + +G+S+ QA+ V +++ P+S+E
Sbjct: 126 VDALTLLSNGIRAGLSVPQAIGMVVDEM---PAPVSQE 160
>gi|326771892|ref|ZP_08231177.1| type II secretion system protein F domain-containing protein
[Actinomyces viscosus C505]
gi|326638025|gb|EGE38926.1| type II secretion system protein F domain-containing protein
[Actinomyces viscosus C505]
Length = 317
Score = 38.9 bits (89), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 76/171 (44%), Gaps = 14/171 (8%)
Query: 155 LIGYV-GFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGG 213
L+G V G A W+S V KR S I+ PD ++LL + V +G A+ R+ G
Sbjct: 148 LMGTVAGAAARDWWLSRAVAKRLSRIEAQLPDVVELLALAVGAGQGPVPAIERIVALGRG 207
Query: 214 QSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLR 273
L +E+ T+ ++ A + R V +A+I + GT + + LR
Sbjct: 208 D---LVDELSSTLTDIRSGTVLSTALDRMERRVGSVHVTRLCEAIIVALERGTPLAEVLR 264
Query: 274 VLVSETRS---ERLME--AEKKAASLGPKLTVPMIIFFLPVLILVIIGPAI 319
++ R + LME ++ A + VP++ LP+ ++ + P +
Sbjct: 265 SQATDVREAARQDLMEEGGRREIAQM-----VPVVFLVLPITVVFALFPGL 310
>gi|115361040|ref|YP_778177.1| type II secretion system protein [Burkholderia ambifaria AMMD]
gi|115286368|gb|ABI91843.1| type II secretion system protein [Burkholderia ambifaria AMMD]
Length = 325
Score = 38.9 bits (89), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 58/130 (44%), Gaps = 6/130 (4%)
Query: 152 AVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDI 211
AV+ I + C P++++ +R ++R PD D++ + SG S AL V E+
Sbjct: 123 AVLPIALLTACLPAMYVMRHRNRRMLKLERQLPDICDMIARALRSGHSFSSALGMVGEEF 182
Query: 212 GGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQA-LIQSDRYGT--SI 268
P+ E +T E+++ + A N R +R A LIQ + G +
Sbjct: 183 PD---PMGGEFRITFDEINYGVSLHDALVNLATRVPAHDLRYFVIAVLIQRETGGNLAEL 239
Query: 269 GDSLRVLVSE 278
DS+ LV E
Sbjct: 240 LDSIASLVRE 249
>gi|260587080|ref|ZP_05852993.1| putative bacterial type II secretion system protein F domain
protein [Blautia hansenii DSM 20583]
gi|260542570|gb|EEX23139.1| putative bacterial type II secretion system protein F domain
protein [Blautia hansenii DSM 20583]
Length = 248
Score = 38.9 bits (89), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 34/156 (21%), Positives = 75/156 (48%), Gaps = 9/156 (5%)
Query: 175 RQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIG---GQSVPLSEEMLLTIAELSF 231
R+ + + DAL+ + + + +G S+D +R +D+ G+ ++ E +L
Sbjct: 63 RKKRLNYQFKDALNAMQVGISAGYSLDNTIREARKDLERLYGEKAEMAREFAYIERQLGH 122
Query: 232 -LPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKK 290
+P ++ + + R++++ + N T LIQ+ + G ++ L +S ER+ ++
Sbjct: 123 SIPLEELLY-DLGIRSRVEDILNFTDVLIQAKKMGGNMRGILNRCISSI-EERIQVKKEI 180
Query: 291 AASLGPKLTVPMIIFFLP---VLILVIIGPAILSII 323
A L + I+ F+P +L + I P LS++
Sbjct: 181 DAVLASRKMEQKIMSFIPLGIILYMQITSPEFLSVL 216
>gi|284989775|ref|YP_003408329.1| Type II secretion system F domain-containing protein
[Geodermatophilus obscurus DSM 43160]
gi|284063020|gb|ADB73958.1| Type II secretion system F domain protein [Geodermatophilus
obscurus DSM 43160]
Length = 313
Score = 38.9 bits (89), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 57/127 (44%), Gaps = 6/127 (4%)
Query: 167 WISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTI 226
W++ VQ+R+ + +P +LL + V +G S A+ RV GG+ L+ E+ +
Sbjct: 156 WLTQQVQRREELLLTEFPVVAELLALAVTAGESPTAAIARVTRLSGGE---LARELGAAL 212
Query: 227 AELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRS---ER 283
A + +RT +D + L+ + GT + + LR ++ R R
Sbjct: 213 GRARAGVPLADALQQVADRTSLDPLARFVDGLLVALERGTPLAEVLRAQAADVREAGKRR 272
Query: 284 LMEAEKK 290
L+EA +
Sbjct: 273 LLEAGGR 279
>gi|331082851|ref|ZP_08331973.1| hypothetical protein HMPREF0992_00897 [Lachnospiraceae bacterium
6_1_63FAA]
gi|330400180|gb|EGG79829.1| hypothetical protein HMPREF0992_00897 [Lachnospiraceae bacterium
6_1_63FAA]
Length = 248
Score = 38.9 bits (89), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 34/156 (21%), Positives = 75/156 (48%), Gaps = 9/156 (5%)
Query: 175 RQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIG---GQSVPLSEEMLLTIAELSF 231
R+ + + DAL+ + + + +G S+D +R +D+ G+ ++ E +L
Sbjct: 63 RKKRLNYQFKDALNAMQVGISAGYSLDNTIREARKDLERLYGEKAEMAREFAYIERQLGH 122
Query: 232 -LPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKK 290
+P ++ + + R++++ + N T LIQ+ + G ++ L +S ER+ ++
Sbjct: 123 SIPLEELLY-DLGIRSRVEDILNFTDVLIQAKKMGGNMRGILNRCISSI-EERIQVKKEI 180
Query: 291 AASLGPKLTVPMIIFFLP---VLILVIIGPAILSII 323
A L + I+ F+P +L + I P LS++
Sbjct: 181 DAVLASRKMEQKIMSFIPLGIILYMQITSPEFLSVL 216
>gi|222147178|ref|YP_002548135.1| component of type IV pilus [Agrobacterium vitis S4]
gi|221734168|gb|ACM35131.1| component of type IV pilus [Agrobacterium vitis S4]
Length = 334
Score = 38.9 bits (89), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 86/173 (49%), Gaps = 28/173 (16%)
Query: 167 WI-SNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGG------QSVPLS 219
WI S L+++RQ +P+ALD+++ ++SG+ ++ ALR +A D + V +
Sbjct: 146 WIVSFLIRRRQEKFLTEFPNALDVMVRSIKSGLPLNDALRMIAVDAQEPVKTEFRRVVDA 205
Query: 220 EEMLLTIAE-----LSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRV 274
+++ +T+ E + +P ++V+F A IQS + G ++ ++L
Sbjct: 206 QQLGITVPEACGRMFNSMPLQEVSF-------------FAIVIAIQS-QAGGNLSEALSN 251
Query: 275 LVSETRSERLMEAEKKAASLGPKLTVPMI--IFFLPVLILVIIGPAILSIIDT 325
L R R M+A+ A S+ K + +I + F+ ++ I PA + ++ T
Sbjct: 252 LSKVLRERRKMKAKVSALSMEAKASAVIIGALPFIVAFLVYISSPAYIMVLFT 304
>gi|329946365|ref|ZP_08293932.1| bacterial type II secretion system protein F domain protein
[Actinomyces sp. oral taxon 170 str. F0386]
gi|328527341|gb|EGF54339.1| bacterial type II secretion system protein F domain protein
[Actinomyces sp. oral taxon 170 str. F0386]
Length = 317
Score = 38.5 bits (88), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 40/165 (24%), Positives = 72/165 (43%), Gaps = 13/165 (7%)
Query: 160 GFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLS 219
G A W+S V KR S I+ PD ++LL + V +G A+ RV G L
Sbjct: 154 GAAARDWWLSRAVAKRLSRIETQLPDVVELLALAVGAGQGPVAAIERVVALGRGD---LI 210
Query: 220 EEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSET 279
+E+ T+ ++ A + R V +A++ + GT + + LR ++
Sbjct: 211 DELGTTLTDIRSGTVLSTALDRMERRVGSVHVTRLCEAIVVALERGTPLAEVLRSQATDV 270
Query: 280 RS---ERLME--AEKKAASLGPKLTVPMIIFFLPVLILVIIGPAI 319
R + LME ++ A + VP++ LP+ ++ + P +
Sbjct: 271 REAARQDLMEEGGRREIAQM-----VPVVFLVLPITVVFALFPGL 310
>gi|119715490|ref|YP_922455.1| type II secretion system protein [Nocardioides sp. JS614]
gi|119536151|gb|ABL80768.1| type II secretion system protein [Nocardioides sp. JS614]
Length = 312
Score = 38.5 bits (88), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 72/164 (43%), Gaps = 3/164 (1%)
Query: 159 VGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPL 218
VG A ++++ V+ R+ I +P +LL + V +G AL RV GG+ L
Sbjct: 147 VGVLARDTYLTSQVRARERRILAEFPTVAELLALAVAAGEGPVAALDRVVRRSGGE---L 203
Query: 219 SEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSE 278
S ++ +AE+ AF+ + + + V Q + + GT + D L ++
Sbjct: 204 SADLARVLAEIRTGEPVATAFDAMASASGLPLVARFAQGIAVAVERGTPLADVLHAQAAD 263
Query: 279 TRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
R E + AA + VP++ LP+ +L P ++ +
Sbjct: 264 VREAGRRELIEAAARKEVFMMVPVVFLVLPITVLFAFWPGVVGL 307
>gi|311107627|ref|YP_003980480.1| type II secretion system protein F domain-containing protein 3
[Achromobacter xylosoxidans A8]
gi|310762316|gb|ADP17765.1| bacterial type II secretion system protein F domain protein 3
[Achromobacter xylosoxidans A8]
Length = 331
Score = 38.5 bits (88), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 62/128 (48%), Gaps = 2/128 (1%)
Query: 197 GISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLP-NRQVAFENFYNRTQMDCVRNAT 255
G+SIDQ+L+ + ++ G Q +P+ L +EL R+ + D +
Sbjct: 196 GLSIDQSLQVLVKEFG-QVLPVLAFELRLASELYVRGRTREQSLARLAAGFDNDDLSAIC 254
Query: 256 QALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVII 315
+ + Q D++G ++ + L R +R +E ++K K+T MI+ LP L++V
Sbjct: 255 RLIAQVDQHGGAVQEPLNRFGERLRDKRRLELKEKVGKTTVKMTGVMIVTLLPALLIVTG 314
Query: 316 GPAILSII 323
G ++++
Sbjct: 315 GAGFIAVL 322
>gi|84685157|ref|ZP_01013056.1| Putative Flp pilus assembly protein TadB [Maritimibacter
alkaliphilus HTCC2654]
gi|84666889|gb|EAQ13360.1| Putative Flp pilus assembly protein TadB [Rhodobacterales bacterium
HTCC2654]
Length = 316
Score = 38.5 bits (88), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 60/256 (23%), Positives = 109/256 (42%), Gaps = 22/256 (8%)
Query: 59 QITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNIL-L 117
Q+ +++ A T D LR V++ L + + I ++R AG S N+L L
Sbjct: 37 QLDRMRRMQAGGDAGTGDR--LRKLVERTALDGLPILGTIPVRMRRAGM--TLSPNVLVL 92
Query: 118 VVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQS 177
LV ++FL+L + G A ++ VG P++ IS KR
Sbjct: 93 GSALVTSLLFLVLQGVIGAGL-------------AFVVAVGVGVLVPTLVISTAALKRAD 139
Query: 178 SIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQV 237
++ R PDALDL+ + G ++ +R VA + P++ E + ++++ +
Sbjct: 140 ALTRQLPDALDLMKRGLSVGHPLNVTIRNVATTL---PDPIAAEFRILADQVAYGDSLTD 196
Query: 238 AFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPK 297
A ++ R ++ + A+ G ++G L L R M A S +
Sbjct: 197 AVDDLARRIDIEDFHYLSAAVQIQHATGGNLGAMLETLARVIRGRFAMRRRVSAVSSEGR 256
Query: 298 LTVPMIIFFLPVLILV 313
+T +I+ +PVL+ V
Sbjct: 257 ITA-IILSAMPVLMYV 271
>gi|323700364|ref|ZP_08112276.1| Type II secretion system F domain [Desulfovibrio sp. ND132]
gi|323460296|gb|EGB16161.1| Type II secretion system F domain [Desulfovibrio desulfuricans
ND132]
Length = 324
Score = 38.5 bits (88), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 50/100 (50%), Gaps = 11/100 (11%)
Query: 152 AVILIGYVGFCAPSVWI-SNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAED 210
I++GY+ +WI +KR ++ P+ALDL+ +++G + +R VA++
Sbjct: 126 GAIMLGYL-----PIWILQGKKRKRMDRFQKQLPEALDLMARALKAGHTFGGGMRMVADE 180
Query: 211 IGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDC 250
G P+ E T+ E+++ + A N +R +DC
Sbjct: 181 FDG---PIGPEFGKTLDEINYGMDVDRALSNLQSR--VDC 215
>gi|222084473|ref|YP_002543002.1| pilus assembly protein [Agrobacterium radiobacter K84]
gi|221721921|gb|ACM25077.1| pilus assembly protein [Agrobacterium radiobacter K84]
Length = 335
Score = 38.5 bits (88), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 64/270 (23%), Positives = 118/270 (43%), Gaps = 52/270 (19%)
Query: 59 QITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLV 118
Q S ++ S L+ + + + N KK +LKA LV + L A F Y ++L
Sbjct: 62 QEMSKRRKSVQDTLKDLEKRQVENTKKKQSLKARLVQAGL--SLTPARF---YVFSVLFG 116
Query: 119 VRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSS 178
+ ++ + ++FG P + G L F P + L+++RQ+
Sbjct: 117 L--------FVMVVAFLFGA------PLAVIAG---LPFAAAFGLPRWVVGFLIKRRQNK 159
Query: 179 IKRAWPDALDLLLICVESGISIDQALRRVAED------------IGGQSVPLSEEMLLTI 226
+P+ALDL+ + SG+ ++ A+R VA + + Q V LS M
Sbjct: 160 FLEEFPNALDLITRSIRSGLPLNDAVRLVASEAREPVRTEFRRVVETQQVGLS--MTDAC 217
Query: 227 AEL-SFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLM 285
A + + +P ++V F + Q N ++AL G+ +VL R + M
Sbjct: 218 ARMNNHMPLQEVNFFSIVIAIQAQAGGNLSEAL----------GNLAKVL----RERKKM 263
Query: 286 EAEKKAASLGPKLTVPMIIFFLPVLILVII 315
+A+ A S+ K + +II LP ++++++
Sbjct: 264 KAKVVALSMEAKASA-VIIGALPFIVMLLV 292
>gi|126729094|ref|ZP_01744908.1| type II/IV secretion system protein, TadC subfamily [Sagittula
stellata E-37]
gi|126710084|gb|EBA09136.1| type II/IV secretion system protein, TadC subfamily [Sagittula
stellata E-37]
Length = 321
Score = 38.5 bits (88), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 40/177 (22%), Positives = 77/177 (43%), Gaps = 4/177 (2%)
Query: 153 VILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIG 212
V+L +G +W+ +KR S I+ PDA++L++ + G A+ V+++I
Sbjct: 120 VVLSAGMGIGGVYMWVGTKAKKRLSMIEEQLPDAVELMVRSLRVGHPFTSAITIVSKEI- 178
Query: 213 GQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSL 272
PL+ E + E ++ + A ++ R M +R A+ + G ++ + L
Sbjct: 179 --KDPLATEFGIIADESAYGRDIGEALKHMAERLDMQDLRFLAVAVAIQQQAGGNLAEIL 236
Query: 273 RVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMKDH 329
L R+ + KA + + + + F PV+ L+ I A D + DH
Sbjct: 237 EGLAKVIRARFRLFRRVKAITAEAQWSGKFLSGF-PVMALIFIQVAKPDYYDEVLDH 292
>gi|313822020|gb|EFS59734.1| type II secretion system F domain protein [Propionibacterium acnes
HL036PA1]
gi|314926542|gb|EFS90373.1| type II secretion system F domain protein [Propionibacterium acnes
HL036PA3]
Length = 249
Score = 38.5 bits (88), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 43/188 (22%), Positives = 85/188 (45%), Gaps = 18/188 (9%)
Query: 142 LEYPFQLRVGAVILIGYVGFCAPSVWISNLVQ---KRQSSIKRA--WPDALDLLLICVES 196
+ +PF G +L+G V + W S ++ R+ RA P+AL +L +E+
Sbjct: 70 VPWPFPAAAGLSVLVGTVMW-----WGSGRLESSGHRRMEQHRAAQLPEALLMLSSAMEA 124
Query: 197 GISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSF-LPNRQVAFENFYNRTQMDCVRNAT 255
G+ + A+ VAE + G P +E++ + L+ +P+ + + + ++ R+
Sbjct: 125 GLPLRSAVTTVAESLEG---PCAEDLRRLASSLAAGVPDSRA----WNDLASVEVWRDPA 177
Query: 256 QALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVII 315
Q + ++ G I + L ++ + + EKKA G P++ LP LV +
Sbjct: 178 QDVSRAVDSGEGISELLSAHAAQLQVAAAEKTEKKARKAGVDAIGPLVCCHLPAFSLVGV 237
Query: 316 GPAILSII 323
P I ++
Sbjct: 238 VPIIAGMV 245
>gi|293606486|ref|ZP_06688844.1| type II secretion system protein [Achromobacter piechaudii ATCC
43553]
gi|292815109|gb|EFF74232.1| type II secretion system protein [Achromobacter piechaudii ATCC
43553]
Length = 330
Score = 38.5 bits (88), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 62/128 (48%), Gaps = 2/128 (1%)
Query: 197 GISIDQALRRVAEDIGGQSVP-LSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNAT 255
G+SIDQ+++ + ++ Q +P LS E+ L R+ + D +
Sbjct: 195 GLSIDQSMQVLIKEFA-QVLPVLSYELRLASEGYVRGRTREQSLARLATGFDNDDLSAIC 253
Query: 256 QALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVII 315
+ + Q D++G ++ + L R +R +E ++K A K+T MI+ LP L++V
Sbjct: 254 RLIAQVDQHGGAVQEPLNRFGERLRDKRRLELKEKVAKTTVKMTGVMIVTLLPALLIVTG 313
Query: 316 GPAILSII 323
G ++++
Sbjct: 314 GAGFIAVL 321
>gi|83716413|ref|YP_440463.1| Flp pilus assembly protein TadB [Burkholderia thailandensis E264]
gi|167617238|ref|ZP_02385869.1| Flp pilus assembly protein TadB [Burkholderia thailandensis Bt4]
gi|257141111|ref|ZP_05589373.1| Flp pilus assembly protein TadB [Burkholderia thailandensis E264]
gi|83650238|gb|ABC34302.1| Flp pilus assembly protein TadB [Burkholderia thailandensis E264]
Length = 325
Score = 38.5 bits (88), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 85/187 (45%), Gaps = 19/187 (10%)
Query: 145 PFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQAL 204
P L V AV I V C P++ + +R ++R PDA D++ + +G + A+
Sbjct: 118 PLPLWVAAVASIATV--CLPTLLVLRCRTRRLRKLERQLPDACDMIARALRAGHAFSSAI 175
Query: 205 RRVAEDIGGQ-SVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQA-LIQSD 262
V GG+ + P+ E +T E+++ Q A N R + +R A LIQ +
Sbjct: 176 SMV----GGEFADPMGGEFRITFDEINYGVPLQEALLNLATRVPVPDLRYFVIAVLIQRE 231
Query: 263 RYGT--SIGDSLRVLVSET----RSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIG 316
G + D + +L+ E R++ AE K ++L + ++ F +L I+
Sbjct: 232 TGGNLAELLDGIALLIRERFKLFDKIRVLSAEGKLSAL-----ILTLLPFGTAALLAIMN 286
Query: 317 PAILSII 323
P +S++
Sbjct: 287 PDFISVL 293
>gi|113867006|ref|YP_725495.1| flp pilus assembly protein TadB [Ralstonia eutropha H16]
gi|113525782|emb|CAJ92127.1| flp pilus assembly protein TadB [Ralstonia eutropha H16]
Length = 282
Score = 38.5 bits (88), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 35/157 (22%), Positives = 70/157 (44%), Gaps = 4/157 (2%)
Query: 159 VGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPL 218
V P + + +KR +I+ PDAL ++ + +G S AL V + P+
Sbjct: 87 VSLLLPRALVKKMQRKRLMAIEDQMPDALLMMSSALRAGASFPMALESVVAE---SRPPI 143
Query: 219 SEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSE 278
S+E L + E+ + A N R + T A+ S G ++ ++L +
Sbjct: 144 SQEFDLLMREVRLGVDLMDALRNMEKRIPVPDFLMVTAAITISREVGGNLAETLESVART 203
Query: 279 TRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVII 315
R + ME + +A + K+ +++ LP+ ++V++
Sbjct: 204 LREKHQMEGKIRALTAQGKMQ-GLVMTGLPLFLIVVL 239
>gi|254487450|ref|ZP_05100655.1| type II/IV secretion system protein, TadC subfamily [Roseobacter
sp. GAI101]
gi|214044319|gb|EEB84957.1| type II/IV secretion system protein, TadC subfamily [Roseobacter
sp. GAI101]
Length = 320
Score = 38.5 bits (88), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 62/139 (44%), Gaps = 8/139 (5%)
Query: 143 EYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQ 202
E P + + I IG V F WIS+ +KR S I+ PDA++L++ + G
Sbjct: 114 EVPIRAVISVAIGIGAVYF-----WISSKAKKRMSMIEEQLPDAVELMVRSLRVGHPFTN 168
Query: 203 ALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSD 262
A+ V+++I PL+ E + E ++ + A + R M +R A+
Sbjct: 169 AIAIVSKEI---QDPLASEFGIISDEAAYGRDIGEALKEMAERLDMQDLRFLAVAVTIQQ 225
Query: 263 RYGTSIGDSLRVLVSETRS 281
+ G ++ + L L R+
Sbjct: 226 QSGGNLAEILAGLAKVIRA 244
>gi|218530658|ref|YP_002421474.1| type II secretion system protein [Methylobacterium chloromethanicum
CM4]
gi|218522961|gb|ACK83546.1| type II secretion system protein [Methylobacterium chloromethanicum
CM4]
Length = 323
Score = 38.5 bits (88), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 69/301 (22%), Positives = 128/301 (42%), Gaps = 35/301 (11%)
Query: 14 LAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLR 73
LAV + AV+ SL Y ++P+L SG + R L + Q ++ +A+SR R
Sbjct: 8 LAVGLV-AVAAGSLAYVFLMPAL-SG-----ERRAEQRRRALGQPQAVLAERGAAASR-R 59
Query: 74 TRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGF---RSEYSLNILLVVRLVVPIIFLIL 130
+ +KSL+ K + + ++ +L AG R +Y R+V I ++L
Sbjct: 60 EQVAKSLKELEAKKDKTKVTLEL----RLARAGLDWSRQKY--------RVVSAITAVVL 107
Query: 131 GIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLL 190
+ ++ L VG GF P+ W+ ++R + P+A+D++
Sbjct: 108 ALAAFLVSHNVIVAGLALFVG--------GFGLPAWWLKRRQKRRVEAFIEELPNAMDVV 159
Query: 191 LICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDC 250
+ + SGI + LR +A + PL E +T+ + + A Y R +
Sbjct: 160 VRGLRSGIPLGDCLRMIARE---AKEPLRSEFRVTMESQALGLSMSDAILRMYERVPVTE 216
Query: 251 VRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVL 310
V + + + G ++ ++L L R + M + +A S+ K + II LP +
Sbjct: 217 VNFFSIVIGIQQKAGGNLSEALGNLSRVLRERKKMAGKIQAMSMEAKASAA-IIGALPFV 275
Query: 311 I 311
+
Sbjct: 276 V 276
>gi|90419768|ref|ZP_01227677.1| putative Flp pilus assembly protein TadB, type II/IV secretion
system [Aurantimonas manganoxydans SI85-9A1]
gi|90335809|gb|EAS49557.1| putative Flp pilus assembly protein TadB, type II/IV secretion
system [Aurantimonas manganoxydans SI85-9A1]
Length = 335
Score = 38.5 bits (88), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 69/270 (25%), Positives = 126/270 (46%), Gaps = 31/270 (11%)
Query: 68 ASSRLRTRDS--KSLRNFVKKLNLKAILVDEN-----IVNKLRAAGFRSEYSLNILLVVR 120
A RL+ +D K++++ +K+L + D++ + +L AG+ +LL +
Sbjct: 55 ARDRLKEQDKRRKTIQSSLKELESRQKERDKHTGKLTLQRQLEQAGWTMSVKQFVLLSIV 114
Query: 121 LVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIK 180
+ V +F + IFG P L +GAV+ +G +G P +S +KR
Sbjct: 115 MGVVSLF----VAAIFGA------PLLLLIGAVV-VGGLGL--PRFLLSRARKKRFHKFG 161
Query: 181 RAWPDALDLLLICVESGISIDQALRRVAEDIGGQSV-PLSEEMLLTIAELSFLPNRQVAF 239
+P+A+DL++ V+SG+ ++ LR V+ G+++ P+ E I A
Sbjct: 162 EEFPNAIDLIVRGVKSGLPLNDTLRIVS----GETLDPVRSEFRKIIESQQMGVPISEAV 217
Query: 240 ENFY-NRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKL 298
E Y N + A IQS + G ++ ++L L + R + M A+ +A S+ K
Sbjct: 218 EKLYRNIPTPEANFFAIVIAIQS-QAGGNLSEALGNLSNVLRDRKKMRAKVQAMSMEAKA 276
Query: 299 TVPMIIFFLPVLI---LVIIGPAILSIIDT 325
+ II LPV++ + I P +S++ T
Sbjct: 277 S-GGIIGALPVVVAGLVYITTPDYISVLFT 305
>gi|167579123|ref|ZP_02371997.1| Flp pilus assembly protein TadB [Burkholderia thailandensis TXDOH]
Length = 325
Score = 38.1 bits (87), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 85/187 (45%), Gaps = 19/187 (10%)
Query: 145 PFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQAL 204
P L V AV I V C P++ + +R ++R PDA D++ + +G + A+
Sbjct: 118 PLPLWVAAVASIATV--CLPTLLVLRCRTRRLRKLERQLPDACDMIARALRAGHAFSSAI 175
Query: 205 RRVAEDIGGQ-SVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQA-LIQSD 262
V GG+ + P+ E +T E+++ Q A N R + +R A LIQ +
Sbjct: 176 SMV----GGEFADPMGGEFRITFDEINYGVPLQEALLNLATRVPVPDLRYFVIAVLIQRE 231
Query: 263 RYGT--SIGDSLRVLVSET----RSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIG 316
G + D + +L+ E R++ AE K ++L + ++ F +L I+
Sbjct: 232 TGGNLAELLDGIALLIRERFKLFDKIRVLSAEGKLSAL-----ILTLLPFGTAALLAIMN 286
Query: 317 PAILSII 323
P +S++
Sbjct: 287 PDFISVL 293
>gi|33152382|ref|NP_873735.1| tight adherence protein B [Haemophilus ducreyi 35000HP]
gi|21326711|gb|AAL92471.1| TadB [Haemophilus ducreyi]
gi|33148605|gb|AAP96124.1| tight adherence protein B [Haemophilus ducreyi 35000HP]
Length = 295
Score = 38.1 bits (87), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 68/154 (44%), Gaps = 18/154 (11%)
Query: 155 LIGYVGFCAPSVWISNLVQKRQSSI-KRAWPDALDLLLICVESGISIDQALRRVAEDIGG 213
LIG+V VW + Q+R + +P+ + +L SG+S+ QA+ R +DI G
Sbjct: 101 LIGFVML----VW--KMGQRRNKKMFDETFPEVIQILNAATSSGVSLLQAMERCGKDIRG 154
Query: 214 QSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLR 273
PL +E L L+ + F++ Y+R + I R S G +R
Sbjct: 155 ---PLGQEFTLIYKRLARGEDAMAVFQDSYSRYPYK----SFYFFICIIRTNLSRGGQIR 207
Query: 274 VLVSE----TRSERLMEAEKKAASLGPKLTVPMI 303
+VS ME +KKA + +++V ++
Sbjct: 208 EVVSRLGRAIADANKMEQKKKAMTAEARMSVMIV 241
>gi|86137997|ref|ZP_01056573.1| type II/IV secretion system protein, TadC subfamily protein
[Roseobacter sp. MED193]
gi|85825589|gb|EAQ45788.1| type II/IV secretion system protein, TadC subfamily protein
[Roseobacter sp. MED193]
Length = 322
Score = 38.1 bits (87), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 66/152 (43%), Gaps = 6/152 (3%)
Query: 130 LGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDL 189
L + FG P LRV A I+IG G W++ KR + I+ PDA++L
Sbjct: 101 LATLAFFGLSIGTNTPLPLRVLASIVIGVGGVF---FWVNRKAGKRMALIEEQLPDAVEL 157
Query: 190 LLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMD 249
++ + G + ++ VA +I PL+ E + E ++ + A + R +
Sbjct: 158 MVRSLRVGHPFNSTVQIVAHEI---EDPLATEFGIIADECAYGRDIGEALKEMAERLDIQ 214
Query: 250 CVRNATQALIQSDRYGTSIGDSLRVLVSETRS 281
+R + A+ + G ++ + L L R+
Sbjct: 215 DLRFLSVAVTIQQQSGGNLAEVLAGLAKVIRA 246
>gi|317489755|ref|ZP_07948254.1| hypothetical protein HMPREF1023_01953 [Eggerthella sp. 1_3_56FAA]
gi|316911101|gb|EFV32711.1| hypothetical protein HMPREF1023_01953 [Eggerthella sp. 1_3_56FAA]
Length = 322
Score = 38.1 bits (87), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 30/47 (63%)
Query: 167 WISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGG 213
W+ + KR+ +++ PDAL + +C ++G+S+ Q ++VA ++ G
Sbjct: 134 WLRTVQDKRRDALREGIPDALRSMAVCFQAGLSLLQTFQQVASEVQG 180
>gi|148272482|ref|YP_001222043.1| putative pilus assembly protein [Clavibacter michiganensis subsp.
michiganensis NCPPB 382]
gi|147830412|emb|CAN01347.1| conserved membrane protein, putative pilus assembly protein
[Clavibacter michiganensis subsp. michiganensis NCPPB
382]
Length = 316
Score = 38.1 bits (87), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 58/136 (42%), Gaps = 3/136 (2%)
Query: 184 PDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFY 243
P L+ L + + +G + ALRRVA G+ L+ E+ +A++ AF++
Sbjct: 177 PTVLEFLALSLAAGEGLLDALRRVARVGSGE---LAMELGRVVADVGTGIPVTRAFDDLA 233
Query: 244 NRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMI 303
R M V L S GT + + LR + R E + A + VP++
Sbjct: 234 RRLAMPAVSRLVDQLAGSLERGTPLAEVLRAQAQDAREVAKRELLESAGRKEVGMLVPLV 293
Query: 304 IFFLPVLILVIIGPAI 319
LP+ I+ + P I
Sbjct: 294 FLILPLTIVFALFPGI 309
>gi|332560333|ref|ZP_08414655.1| Type II secretion system protein [Rhodobacter sphaeroides WS8N]
gi|332278045|gb|EGJ23360.1| Type II secretion system protein [Rhodobacter sphaeroides WS8N]
Length = 322
Score = 38.1 bits (87), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 52/112 (46%), Gaps = 17/112 (15%)
Query: 151 GAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAED 210
GAV L+ +G A VW++ +KR + I+ PDA++L++ + G A++ VA++
Sbjct: 121 GAVALV--MGVGAVYVWVNGKAKKRMALIEEQLPDAVELMVRSLRVGHPFSSAIQIVAKE 178
Query: 211 IGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSD 262
+ PL E + +A E Y R +C+R + + D
Sbjct: 179 VPD---PLGTEFGV------------IADEAAYGRDVAECIRAFAERMESQD 215
>gi|295094185|emb|CBK83276.1| Bacterial type II secretion system protein F domain. [Coprococcus
sp. ART55/1]
Length = 443
Score = 38.1 bits (87), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 37/158 (23%), Positives = 69/158 (43%), Gaps = 18/158 (11%)
Query: 160 GFCAPSVWISN------LVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVA----E 209
GF A +W N + +KR + +P+ +D L + + +G+++ A R+ E
Sbjct: 268 GFAAICIWGGNRSKIQGMEKKRSDELMSEYPELVDKLTLYLGAGVTVRGAFARIVKSGRE 327
Query: 210 DIGGQSVP---LSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGT 266
D G L+ E++ T+ E+ + A+ N +R + L Q+ + GT
Sbjct: 328 DCAGTDQGGSVLTRELIYTLNEIQAGVSESEAYYNMGHRINLPMYIKLMSLLSQNVKKGT 387
Query: 267 SIGDSLRVLVSETRS---ERLMEAEKKAASLGPKLTVP 301
D L ++ E ++ R A++K G KL +P
Sbjct: 388 R--DILIMMAGEEQNAMQTRKEMAKRKGEEAGTKLLLP 423
>gi|257790306|ref|YP_003180912.1| type II secretion system protein [Eggerthella lenta DSM 2243]
gi|325830204|ref|ZP_08163661.1| type II secretion system protein F domain protein [Eggerthella sp.
HGA1]
gi|257474203|gb|ACV54523.1| type II secretion system protein [Eggerthella lenta DSM 2243]
gi|325487671|gb|EGC90109.1| type II secretion system protein F domain protein [Eggerthella sp.
HGA1]
Length = 322
Score = 38.1 bits (87), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 30/47 (63%)
Query: 167 WISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGG 213
W+ + KR+ +++ PDAL + +C ++G+S+ Q ++VA ++ G
Sbjct: 134 WLRTVQDKRRDALREGIPDALRSMAVCFQAGLSLLQTFQQVASEVQG 180
>gi|257053876|ref|YP_003131709.1| type II secretion system protein [Halorhabdus utahensis DSM 12940]
gi|256692639|gb|ACV12976.1| type II secretion system protein [Halorhabdus utahensis DSM 12940]
Length = 802
Score = 38.1 bits (87), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 77/174 (44%), Gaps = 13/174 (7%)
Query: 121 LVVPIIFLILGIIWIF--GYDKLLEYPFQLRVGAVILIGYVGFCAPS-VWISNLVQKRQS 177
L VPI ++W+ + Y F LR+ +L+ F + + + +R
Sbjct: 416 LTVPI-----ALVWVALRAPGTITGYGFNLRLADDLLVQTTLFLIGTFAVVREIYSRRID 470
Query: 178 SIKRAWPDALDLLLICVESGISIDQALRRVAE-DIGGQSVPLSEEMLLTIAELSFLPNRQ 236
I+ A P+ L+ L E+G+S ++L RV + D+G L++E+ ++S N
Sbjct: 471 RIEAATPELLERLASLNEAGMSFVESLDRVRDSDLG----VLTDEVDRIWTDISMGANSP 526
Query: 237 VAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKK 290
A F R + + L+ + R +G LR+ S+ RS+ + E++
Sbjct: 527 DALRRFGQRVRTASIARVVTLLMHAMRASGRLGPVLRIASSQARSDLELRRERR 580
>gi|224824219|ref|ZP_03697327.1| type II secretion system protein [Lutiella nitroferrum 2002]
gi|224603638|gb|EEG09813.1| type II secretion system protein [Lutiella nitroferrum 2002]
Length = 324
Score = 38.1 bits (87), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 35/171 (20%), Positives = 78/171 (45%), Gaps = 15/171 (8%)
Query: 160 GFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLS 219
G P + + KR + + PDA+DL+ + +G ++ Q+L+ + +++ S P+S
Sbjct: 130 GATIPWMVVMRFRHKRLAKFEEQLPDAIDLMCRALRAGHALPQSLKMIGDEM---SDPIS 186
Query: 220 EEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSET 279
E T E+++ + Q A N R +R A++ G ++ + L + +
Sbjct: 187 GEFRTTFDEVNYGFSLQEAMMNLATRIPSTDLRYMVIAVLIQRETGGNLAELLGNISALI 246
Query: 280 RSE-------RLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSII 323
R+ R++ AE K ++ + I+ F L++ ++ P + ++
Sbjct: 247 RARLKLYGTIRVLAAEGKLSAW-----ILTILPFAVALVIHLLNPGFMKVL 292
>gi|254461341|ref|ZP_05074757.1| type II secretion system protein [Rhodobacterales bacterium
HTCC2083]
gi|206677930|gb|EDZ42417.1| type II secretion system protein [Rhodobacteraceae bacterium
HTCC2083]
Length = 322
Score = 38.1 bits (87), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 46/204 (22%), Positives = 92/204 (45%), Gaps = 10/204 (4%)
Query: 129 ILGIIWIFGYDKLL---EYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPD 185
I+G++ +F + L + +R+ A + IG G +WIS+ +KR S ++ PD
Sbjct: 97 IMGMVCVFAFLGLTIGTQTSIGVRIIASVGIGVGGVF---MWISHKAKKRMSMLEEQLPD 153
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
A++L++ + G A++ VA+++ PL+ EM + E ++ + A + R
Sbjct: 154 AVELMVRSLRVGHPFSSAVQIVAKEV---QDPLASEMGVIADESAYGRDVGEALKAMAER 210
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
+R A+ + G ++ + L L R+ + KA + + + +
Sbjct: 211 LDNQDLRFLAVAVTIQQQSGGNLAEILAGLAQVIRARFRLFRRVKAITAEAQWSGKFLSS 270
Query: 306 FLPVLILVIIGPAILSIIDTMKDH 329
F P++ LV I + D + DH
Sbjct: 271 F-PLMALVAIQLGDPNYYDPVLDH 293
>gi|153853655|ref|ZP_01995035.1| hypothetical protein DORLON_01026 [Dorea longicatena DSM 13814]
gi|149753810|gb|EDM63741.1| hypothetical protein DORLON_01026 [Dorea longicatena DSM 13814]
Length = 376
Score = 38.1 bits (87), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 42/180 (23%), Positives = 78/180 (43%), Gaps = 13/180 (7%)
Query: 135 IFGYDKLLEY-PFQLRVGAVI-----LIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
+ G ++L Y PF R G VI +IG + + I ++R+ + +P+ +
Sbjct: 177 MLGTNELRYYQPFNER-GPVITVMGMMIGILLYALQKQNIRKAEEERKKQMIEDYPEVIS 235
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSE-----EMLLTIAELSFLPNRQVAFENFY 243
L + + +G+++ +A R++ E + +E EM T E+ +ENF
Sbjct: 236 KLTLYLGAGMTVKKAWRKITEGYMKEKEDENERYVYEEMRQTCHEMDSGVTEAEGYENFG 295
Query: 244 NRTQMDCVRNATQALIQSDRYGT-SIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPM 302
R + L Q+ R GT + + L++ + ER A++ G KL +PM
Sbjct: 296 RRCDLQIYIRLGALLSQNLRKGTKGLSELLKLESIQAFEERKARAKRLGEEAGTKLLLPM 355
>gi|170725111|ref|YP_001759137.1| type II secretion system protein [Shewanella woodyi ATCC 51908]
gi|169810458|gb|ACA85042.1| type II secretion system protein [Shewanella woodyi ATCC 51908]
Length = 283
Score = 38.1 bits (87), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 47/210 (22%), Positives = 87/210 (41%), Gaps = 15/210 (7%)
Query: 107 FRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRV-----GAVILIGYVGF 161
F S N+ + + P +L +I +F PF +R+ I+I V
Sbjct: 37 FTSSAKTNLFDMFLFIEPKQLFMLNMITLFSV------PFIVRIFLGSWALGIIISIVLA 90
Query: 162 CAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEE 221
P L ++R+ PDAL+++ ++SG ++ A+ ++E++ P+ +E
Sbjct: 91 FIPRFAYKFLHKRRRRKFVHQLPDALNMIASSMQSGANVSTAIEFMSEEM---QAPIKQE 147
Query: 222 MLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRS 281
L E A +N Y R D + T + S G ++ + L L S R
Sbjct: 148 FQLFQREQRLGVEFNTALDNMYKRIPEDEFQLVTAGMQISREVGGNLAEVLFRLSSTLRR 207
Query: 282 ERLMEAEKKAASLGPKLTVPMIIFFLPVLI 311
+ ME + A + K+ +++ LP+ I
Sbjct: 208 KIEMEGKIDALTSQGKMQ-GIVMTMLPLFI 236
>gi|260461945|ref|ZP_05810190.1| type II secretion system protein [Mesorhizobium opportunistum
WSM2075]
gi|259032192|gb|EEW33458.1| type II secretion system protein [Mesorhizobium opportunistum
WSM2075]
Length = 337
Score = 38.1 bits (87), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 73/329 (22%), Positives = 141/329 (42%), Gaps = 71/329 (21%)
Query: 10 DATELAVAITTAVSIFSLIYAVVIPSLG----SGELEKRMKSVAVEREILRKQQITSLQK 65
D T LA + S ++ YA + + +G+ + +K+ +R +++ + +
Sbjct: 5 DGTVLAFVVLAGFSAGAVAYAFLFNQISNERQTGKRLETIKAAETDRSVVKATRDRA--T 62
Query: 66 DSASSRLRTRDS--------KSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILL 117
D+A R +DS KS + +KK LKA +LR AG + +
Sbjct: 63 DAAKRRKSVQDSLKELDEKQKSKDSAIKKPPLKA---------QLRQAGMK-------VP 106
Query: 118 VVRLVV--PIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKR 175
+ R + I + L +I L+ P V+L G +G P ++S +R
Sbjct: 107 IERFYIYSAICGIALTVIAFVAGAPLIVLP------GVLLAGALGL--PRWFVSFRRSRR 158
Query: 176 QSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGG------QSVPLSEEMLLTIAEL 229
+ +P+ALD+++ V+SG+ ++ A+R +A + + + S++M L+I +
Sbjct: 159 VKAFLNEFPNALDIIVRAVKSGLPLNDAVRLIANEAPEPVKTEFRRIVDSQQMGLSIPDA 218
Query: 230 SF-----LPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERL 284
+ +P + +F + Q N ++AL G+ RVL R +
Sbjct: 219 TLRMPETMPCTEASFFGIVIQIQSQAGGNLSEAL----------GNLSRVL----RDRKK 264
Query: 285 MEAEKKAASLGPKLT------VPMIIFFL 307
M+A+ +A S+ K + +P I+ FL
Sbjct: 265 MKAKVQALSMEAKASAAIIGALPFIVAFL 293
>gi|193213110|ref|YP_001999063.1| type II secretion system protein [Chlorobaculum parvum NCIB 8327]
gi|193086587|gb|ACF11863.1| type II secretion system protein [Chlorobaculum parvum NCIB 8327]
Length = 322
Score = 38.1 bits (87), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 41/80 (51%), Gaps = 4/80 (5%)
Query: 153 VILIGYVGFCA-PSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDI 211
V+ + V F + P +W+S KR+ + P+ALD + + +G S+ A+ V ++
Sbjct: 120 VLFVLAVAFASSPLLWLSRQANKRRQAFSEKLPEALDYVTRSLRAGHSLTSAIGIVGKEF 179
Query: 212 GGQSVPLSEEMLLTIAELSF 231
G P+ +E + E+SF
Sbjct: 180 PG---PIGQEFKIVFDEISF 196
>gi|56477521|ref|YP_159110.1| putative Flp pilus assembly protein [Aromatoleum aromaticum EbN1]
gi|56313564|emb|CAI08209.1| putative Flp pilus assembly protein [Aromatoleum aromaticum EbN1]
Length = 324
Score = 38.1 bits (87), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 58/127 (45%), Gaps = 8/127 (6%)
Query: 141 LLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISI 200
LL P L +G +++G + P++++ + + P+ALDL+ + +G +
Sbjct: 115 LLNRPLFLGLGFAVVLGML----PTLYVMRARNQHMQRFELQLPEALDLMGRALRAGHAF 170
Query: 201 DQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRT-QMDCVRNATQALI 259
A++ VAE++ P+ E + E+++ +Q A N +RT D LI
Sbjct: 171 PTAIKMVAEEM---KDPIGGEFRILFDEMNYGVPQQTAMLNLASRTDSTDLSYFVIAVLI 227
Query: 260 QSDRYGT 266
Q D G
Sbjct: 228 QRDSGGN 234
>gi|315605668|ref|ZP_07880701.1| conserved hypothetical protein [Actinomyces sp. oral taxon 180 str.
F0310]
gi|315312623|gb|EFU60707.1| conserved hypothetical protein [Actinomyces sp. oral taxon 180 str.
F0310]
Length = 425
Score = 38.1 bits (87), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 24/38 (63%)
Query: 280 RSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGP 317
R RL +A+ KA LG +L P+ +FFLP + + IGP
Sbjct: 377 RRMRLADAKTKAEELGVRLVAPLGLFFLPAFLALGIGP 414
>gi|83943935|ref|ZP_00956392.1| type II/IV secretion system protein, TadC subfamily protein
[Sulfitobacter sp. EE-36]
gi|83954508|ref|ZP_00963219.1| type II/IV secretion system protein, TadC subfamily protein
[Sulfitobacter sp. NAS-14.1]
gi|83840792|gb|EAP79963.1| type II/IV secretion system protein, TadC subfamily protein
[Sulfitobacter sp. NAS-14.1]
gi|83845182|gb|EAP83062.1| type II/IV secretion system protein, TadC subfamily protein
[Sulfitobacter sp. EE-36]
Length = 320
Score = 38.1 bits (87), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 40/173 (23%), Positives = 78/173 (45%), Gaps = 9/173 (5%)
Query: 143 EYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQ 202
E P ++ + I +G V F WIS+ +KR I+ PDA++L++ + G
Sbjct: 114 EVPVRILISVGIGVGAVFF-----WISSKAKKRMDMIEEQLPDAVELMVRSLRVGHPFTS 168
Query: 203 ALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSD 262
A+ V+++I PL+ E + E ++ + A ++ R M +R A+
Sbjct: 169 AISIVSKEIQD---PLASEFGVIADETAYGRDIGEALKDMAERLDMQDLRFLAVAVTIQQ 225
Query: 263 RYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVII 315
+ G ++ + L L R+ + +A + K + + F P+L L++I
Sbjct: 226 QSGGNLAEILAGLAKVIRARFRLFRRVRAITAEAKWSGKFLSAF-PILALIVI 277
>gi|269129021|ref|YP_003302391.1| type II secretion system protein [Thermomonospora curvata DSM
43183]
gi|268313979|gb|ACZ00354.1| type II secretion system protein [Thermomonospora curvata DSM
43183]
Length = 208
Score = 37.7 bits (86), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 66/143 (46%), Gaps = 6/143 (4%)
Query: 184 PDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFY 243
P A+ LL C+ G+S D+A+ V + +GG PL E+ A + + A+
Sbjct: 68 PIAIGLLAACLRGGLSWDEAVEAVCDAVGG---PLGAELRAVAARVRLGADPAAAWLALA 124
Query: 244 NRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMI 303
++ + + S G ++ +L L ++ R+ A +A ++G + P+
Sbjct: 125 QEPELAPLARTVARAVDS---GAALAPALTRLAADRRAAARAAAAARARAVGVRAVAPLG 181
Query: 304 IFFLPVLILVIIGPAILSIIDTM 326
+ FLP IL+ + PA+ I T+
Sbjct: 182 LCFLPAFILLGVAPAVAGIAQTL 204
>gi|260574612|ref|ZP_05842615.1| type II secretion system protein [Rhodobacter sp. SW2]
gi|259023029|gb|EEW26322.1| type II secretion system protein [Rhodobacter sp. SW2]
Length = 322
Score = 37.7 bits (86), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 34/156 (21%), Positives = 72/156 (46%), Gaps = 9/156 (5%)
Query: 129 ILGIIWIFGYDKLL---EYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPD 185
I+G++ +F Y L + P Q+R+ I +G G VW++ +KR + ++ PD
Sbjct: 97 IMGLLAVFSYLGLTIGTQAPTQVRILVAIAMGIGGVY---VWVNGKAKKRIALMEEQLPD 153
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
A++L++ + G A+ V++++ PL E + E ++ + + + F R
Sbjct: 154 AVELMVRSLRVGHPFASAIAIVSKEVAD---PLGTEFGIIGDEAAYGRDVTESLKAFAER 210
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRS 281
+R + A+ + G ++ + L L R+
Sbjct: 211 MDNQDLRFLSVAVTIQQQSGGNLAEILEGLAKVIRA 246
>gi|322369440|ref|ZP_08044005.1| type II secretion system protein [Haladaptatus paucihalophilus
DX253]
gi|320551172|gb|EFW92821.1| type II secretion system protein [Haladaptatus paucihalophilus
DX253]
Length = 699
Score = 37.7 bits (86), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 34/158 (21%), Positives = 73/158 (46%), Gaps = 11/158 (6%)
Query: 173 QKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAE-DIGGQSVPLSEEMLLTIAELSF 231
++R +I+ A PD LD L E+G+++ +++RRV D+G L++E+ ++ +
Sbjct: 470 RRRVKAIEAAVPDMLDRLASLNEAGMTVVESVRRVTNSDLGA----LNDELERMSRDIEW 525
Query: 232 LPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKA 291
+ A +R V + + IG LR+ + + R ++ +++
Sbjct: 526 GTDAATALRRVEDRIDTPTVTRVVSLVTNAMHASGDIGRVLRIAADDAQESRRLQRQRE- 584
Query: 292 ASLGPKLTVPMIIFFLPVLI-LVIIGPAILSIIDTMKD 328
++ +II +L + LVIIG ++ ++D
Sbjct: 585 ----DEMKTYLIIIYLSFFVFLVIIGALSAILVPALQD 618
>gi|296284555|ref|ZP_06862553.1| hypothetical protein CbatJ_13051 [Citromicrobium bathyomarinum
JL354]
Length = 323
Score = 37.7 bits (86), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 37/157 (23%), Positives = 70/157 (44%), Gaps = 4/157 (2%)
Query: 159 VGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPL 218
+G P + + +++R + +PDA+DLL+ + SG+ + + L VA++I G P+
Sbjct: 128 IGAGVPHMAVGFFMKRRTAQFNARFPDAIDLLVRGLRSGLPVTETLAVVAQEIPG---PV 184
Query: 219 SEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSE 278
E I + + + A + +R + AL G ++ ++L L
Sbjct: 185 GIEFKGIIERIKIGRSMEEAMQESADRLGIAEFNFFVIALAIQRETGGNLAETLSNLSDV 244
Query: 279 TRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVII 315
R M+ + KA S K + I+ LP L+ +I
Sbjct: 245 LRKRAQMKLKIKAMSSESKASA-YIVGSLPFLVFAMI 280
>gi|13475421|ref|NP_106985.1| hypothetical protein mlr6484 [Mesorhizobium loti MAFF303099]
gi|14026173|dbj|BAB52771.1| mlr6484 [Mesorhizobium loti MAFF303099]
Length = 323
Score = 37.7 bits (86), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 40/164 (24%), Positives = 75/164 (45%), Gaps = 4/164 (2%)
Query: 152 AVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDI 211
AVI+ VGF P + + + KR PDALD+++ + +G A+ VA ++
Sbjct: 121 AVIVFLIVGFVLPILVLRSARDKRIKKFAVQLPDALDMIVRSLRAGHPTTVAIALVAREM 180
Query: 212 GGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDS 271
PL E + E+SF + + A R + + + +L + G ++ +
Sbjct: 181 ---PDPLGTEFGIVSDEISFGLSLEQAVRKLSERVGFEGLHLLSVSLSIQAKTGGNLTEI 237
Query: 272 LRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVII 315
L L S R R + + +A S +++ +I F P+L+L ++
Sbjct: 238 LSNLSSVLRERRKLRMKIRALSAEGRMSAWIISLF-PLLMLGVL 280
>gi|254182576|ref|ZP_04889170.1| type II secretion system protein [Burkholderia pseudomallei 1655]
gi|184213111|gb|EDU10154.1| type II secretion system protein [Burkholderia pseudomallei 1655]
Length = 330
Score = 37.7 bits (86), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 36/170 (21%), Positives = 77/170 (45%), Gaps = 17/170 (10%)
Query: 162 CAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQ-SVPLSE 220
C P++++ +R ++R PDA D++ + +G + A+ V GG+ + P+
Sbjct: 138 CLPTLFVLRCRTRRLRKLERQLPDACDMIARALRAGHAFSSAISMV----GGEFAEPMGG 193
Query: 221 EMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETR 280
E +T E+++ + Q A N R + +R A++ G ++ + L + R
Sbjct: 194 EFRITFDEINYGVSLQEALLNLATRVPVSDLRYFVIAVLIQRETGGNLAELLDGIAQLIR 253
Query: 281 SE-------RLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSII 323
R++ AE K ++L + ++ F +L I+ P +S++
Sbjct: 254 ERFKLFDKIRVLSAEGKLSAL-----ILTLLPFATAALLSIMNPDFISVL 298
>gi|13474664|ref|NP_106233.1| hypothetical protein mlr5603 [Mesorhizobium loti MAFF303099]
gi|14025419|dbj|BAB52019.1| mlr5603 [Mesorhizobium loti MAFF303099]
Length = 337
Score = 37.7 bits (86), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 69/324 (21%), Positives = 144/324 (44%), Gaps = 61/324 (18%)
Query: 10 DATELAVAITTAVSIFSLIYAVVIPSLG----SGELEKRMKSVAVEREILRKQQITSLQK 65
D T LA + S ++ YA + + +G+ + +K+ +R I++ +
Sbjct: 5 DGTVLAFVVLAGFSAGAVAYAFLFTQISNEKQAGKRLETIKTAETDRSIVKAT------R 58
Query: 66 DSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVN-----KLRAAGFRSEYSLNILLVVR 120
D A+ + R KS+++ +K+L+ K D I +LR AG + S+ +
Sbjct: 59 DRATDAAKRR--KSVQDSLKELDEKQKTKDSAIKKPPLKAQLRQAGMK--VSIERFYIYS 114
Query: 121 LVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIK 180
+ + + + ++ G L+ + V+L G +G P ++S +R +
Sbjct: 115 AICGLALTV--VAFVVGAPMLV-------LPGVLLAGALGL--PRWFVSFRRARRVKAFL 163
Query: 181 RAWPDALDLLLICVESGISIDQALRRVA----EDIGGQ--SVPLSEEMLLTIAELSF--- 231
+P+ALD+++ V+SG+ ++ A+R +A E + + + S++M ++I + +
Sbjct: 164 NEFPNALDIIVRAVKSGLPLNDAVRLIANESPEPVKAEFRRIVDSQQMGISIPDATLRMP 223
Query: 232 --LPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEK 289
+P + +F + Q N ++AL G+ RVL R + M+A+
Sbjct: 224 ETMPCTEASFFGIVIQIQSQAGGNLSEAL----------GNLSRVL----RDRKKMKAKV 269
Query: 290 KAASLGPKLT------VPMIIFFL 307
+A S+ K + +P I+ FL
Sbjct: 270 QALSMEAKASAAIIGALPFIVAFL 293
>gi|323702117|ref|ZP_08113785.1| Type II secretion system F domain [Desulfotomaculum nigrificans DSM
574]
gi|323532999|gb|EGB22870.1| Type II secretion system F domain [Desulfotomaculum nigrificans DSM
574]
Length = 323
Score = 37.7 bits (86), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 38/176 (21%), Positives = 80/176 (45%), Gaps = 8/176 (4%)
Query: 154 ILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGG 213
+++G G P + + QKR + DAL ++ + SG S QA+ V +++
Sbjct: 123 LIVGICGLIIPCLILRMARQKRLAKFNAQIGDALVIMANSLRSGFSFLQAMDMVRKELPN 182
Query: 214 QSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLR 273
P+S E E+S + A +N R + D + A++ + G ++ + L
Sbjct: 183 ---PISREFGRAFQEMSLGTPTEEALQNMAQRVKSDDLDLVITAVLIQRQVGGNLAEVLD 239
Query: 274 VLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP----VLILVIIGPAILSIIDT 325
+ R ++ + ++ + +++ M+I FLP L+LVI I+++ ++
Sbjct: 240 NIADTIRERVRIKGQIRSITAQGRIS-GMVIGFLPFALAALMLVISPQYIMTLFNS 294
>gi|326205013|ref|ZP_08194863.1| Type II secretion system F domain [Clostridium papyrosolvens DSM
2782]
gi|325984818|gb|EGD45664.1| Type II secretion system F domain [Clostridium papyrosolvens DSM
2782]
Length = 296
Score = 37.7 bits (86), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 22/98 (22%), Positives = 51/98 (52%), Gaps = 1/98 (1%)
Query: 168 ISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIA 227
++N V+KR+ I+ +PD ++ L + + +G+++ +A +++ D + +E+ T+A
Sbjct: 137 LTNKVKKRRLEIQLEFPDFINKLTLLLNAGLTMSKAWEKISLD-SKKVSAFHKEVKKTVA 195
Query: 228 ELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYG 265
+L + AF F R + + +IQ+ + G
Sbjct: 196 QLKTGVSEAEAFGEFAKRLKTPEISRVMSIIIQNSKKG 233
>gi|288559927|ref|YP_003423413.1| type II secretion system protein F GspF2 [Methanobrevibacter
ruminantium M1]
gi|288542637|gb|ADC46521.1| type II secretion system protein F GspF2 [Methanobrevibacter
ruminantium M1]
Length = 309
Score = 37.7 bits (86), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 33/151 (21%), Positives = 72/151 (47%), Gaps = 11/151 (7%)
Query: 173 QKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFL 232
++R+ ++ + PD L L + G+S++ AL ++E G PL +E+ + E+
Sbjct: 92 ERRREELENSIPDFLRQLASMLRVGMSLENALVDLSEHGNG---PLYDELRRVVVEIRMG 148
Query: 233 PNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAA 292
+ +F N R + + + ++ + + G + D + + + R+ +++ E+K+
Sbjct: 149 KSFDESFRNMAKRLDSKDLERSFKIILNAHKSGGGLADVISDVSDDLRAMLILKRERKS- 207
Query: 293 SLGPKLTVPMIIFFLPVLILVIIGPAILSII 323
+V M I FL VL V+ P L ++
Sbjct: 208 ------SVMMSIMFL-VLASVVAAPFALGMV 231
>gi|149175457|ref|ZP_01854078.1| putative tight adherence tadb-related transmembrane protein
[Planctomyces maris DSM 8797]
gi|148845725|gb|EDL60067.1| putative tight adherence tadb-related transmembrane protein
[Planctomyces maris DSM 8797]
Length = 285
Score = 37.7 bits (86), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 52/233 (22%), Positives = 90/233 (38%), Gaps = 22/233 (9%)
Query: 76 DSKSLRNF---VKKLNLKAILVDENIVNKLRAAGF-----RSEYSLNILLVVRLVVPIIF 127
++K++ NF ++ + A+ + + N+L GF S N +++ L +
Sbjct: 8 NTKNMENFSDILRDQDRYAVNDSKQLGNRLNG-GFDELIIHSGLDANPGVILFLCLMTAT 66
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
L G+I+I + L VG + IGY+ F +RQ+ I D +
Sbjct: 67 LAGGLIFIL-QENFLSTSIAFMVGGMAPIGYLIFSRS---------RRQNKINDQLSDMI 116
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQ 247
D L ++G S+ VAE PL +E+ L + + A + Y RT
Sbjct: 117 DELARAAKTGRSLTHCFINVAEKT---PAPLGDELKEASRRLQMGVSMKAALDGLYERTG 173
Query: 248 MDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV 300
+ + + ALI G + L L R L + A+ G + T
Sbjct: 174 VASLNILSMALIVHQETGGDLVKVLERLARTIRDRVLFLGRLRTATAGSRATA 226
>gi|116671912|ref|YP_832845.1| type II secretion system protein [Arthrobacter sp. FB24]
gi|116612021|gb|ABK04745.1| type II secretion system protein [Arthrobacter sp. FB24]
Length = 204
Score = 37.7 bits (86), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 30/46 (65%)
Query: 280 RSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDT 325
R ER AEK+AA+LG +L VP+ + LP + + + P +L+++ +
Sbjct: 157 RRERFRAAEKRAAALGVRLVVPLGLCSLPAFVCLGVVPVLLAMLPS 202
>gi|229821270|ref|YP_002882796.1| type II secretion system protein [Beutenbergia cavernae DSM 12333]
gi|229567183|gb|ACQ81034.1| type II secretion system protein [Beutenbergia cavernae DSM 12333]
Length = 315
Score = 37.7 bits (86), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 35/152 (23%), Positives = 66/152 (43%), Gaps = 3/152 (1%)
Query: 168 ISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIA 227
++ V+ R++ I +P +LL + V +G + AL RVA G+ LS E+ T+A
Sbjct: 160 LTRQVRAREARIMAEFPTVAELLALAVSAGEAPVAALDRVARSTQGE---LSAELGRTLA 216
Query: 228 ELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEA 287
++ A E RT + V + + G+ + D LR ++ R E
Sbjct: 217 DVRAGATMAGALEGLARRTDLPAVSRFADGVAVAIERGSPLADVLRAQAADARDAGKREL 276
Query: 288 EKKAASLGPKLTVPMIIFFLPVLILVIIGPAI 319
+ + +P++ LPV ++ + P +
Sbjct: 277 MESGGRKEVAMMIPVVFLVLPVTVVFALFPGL 308
>gi|190149861|ref|YP_001968386.1| tight adherence protein B [Actinobacillus pleuropneumoniae serovar
7 str. AP76]
gi|303251576|ref|ZP_07337750.1| Flp pilus assembly protein [Actinobacillus pleuropneumoniae serovar
6 str. Femo]
gi|307249755|ref|ZP_07531733.1| Tight adherence protein B [Actinobacillus pleuropneumoniae serovar
4 str. M62]
gi|307252111|ref|ZP_07534010.1| Tight adherence protein B [Actinobacillus pleuropneumoniae serovar
6 str. Femo]
gi|307263185|ref|ZP_07544806.1| Tight adherence protein B [Actinobacillus pleuropneumoniae serovar
13 str. N273]
gi|189914992|gb|ACE61244.1| tight adherence protein B [Actinobacillus pleuropneumoniae serovar
7 str. AP76]
gi|302649574|gb|EFL79756.1| Flp pilus assembly protein [Actinobacillus pleuropneumoniae serovar
6 str. Femo]
gi|306858170|gb|EFM90248.1| Tight adherence protein B [Actinobacillus pleuropneumoniae serovar
4 str. M62]
gi|306860411|gb|EFM92425.1| Tight adherence protein B [Actinobacillus pleuropneumoniae serovar
6 str. Femo]
gi|306871547|gb|EFN03270.1| Tight adherence protein B [Actinobacillus pleuropneumoniae serovar
13 str. N273]
Length = 295
Score = 37.4 bits (85), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 58/250 (23%), Positives = 107/250 (42%), Gaps = 29/250 (11%)
Query: 67 SASSRLRTRDSKSLR--NFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVP 124
+AS+ +T + R F +KLN V++ + +L F S N+ VR ++
Sbjct: 19 TASAWFKTHKKINARETGFTEKLNKTTKKVNDTV--QLWIYYFTSGDKNNL---VRNIII 73
Query: 125 IIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSI-KRAW 183
+ +G+ ++ + +P Q A ++ +GF +W L Q+R + +
Sbjct: 74 HFLIFIGLYYLNA--NYIRFPNQ----AFMIAEVIGFIF-VIW--KLGQRRNRKLFNEKF 124
Query: 184 PDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFY 243
P+ + +L SG+S+ QAL R +DI G P+ EE + L+ + F++ Y
Sbjct: 125 PEVIQVLNSATSSGVSLLQALERCGKDITG---PIGEEFTIIYKRLARGEDVMAVFQDSY 181
Query: 244 NRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSE----TRSERLMEAEKKAASLGPKLT 299
+R I R S G +R ++S ME +KKA + +++
Sbjct: 182 SRYPYK----EFYFFISIIRTNLSRGGQMREVISRLGRAIADSNKMEQKKKAMTSEARMS 237
Query: 300 VPMIIFFLPV 309
++ F PV
Sbjct: 238 AAIVACF-PV 246
>gi|307256570|ref|ZP_07538351.1| Tight adherence protein B [Actinobacillus pleuropneumoniae serovar
10 str. D13039]
gi|306864980|gb|EFM96882.1| Tight adherence protein B [Actinobacillus pleuropneumoniae serovar
10 str. D13039]
Length = 295
Score = 37.4 bits (85), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 58/250 (23%), Positives = 108/250 (43%), Gaps = 29/250 (11%)
Query: 67 SASSRLRTRDSKSLR--NFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVP 124
+AS+ +T + R +F +KLN V++ + +L F S N+ VR ++
Sbjct: 19 TASAWFKTHKKINARETSFTEKLNKTTKKVNDTV--QLWIYYFTSGDKNNL---VRNIII 73
Query: 125 IIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSI-KRAW 183
+ +G+ ++ + +P Q A ++ +GF +W L Q+R + +
Sbjct: 74 HFLIFIGLYYLNA--NYIRFPNQ----AFMIAEVIGFIF-VIW--KLGQRRNRKLFNEKF 124
Query: 184 PDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFY 243
P+ + +L SG+S+ QAL R +DI G P+ EE + L+ + F++ Y
Sbjct: 125 PEVIQVLNSATSSGVSLLQALERCGKDITG---PIGEEFAIIYKRLARGEDVMAVFQDSY 181
Query: 244 NRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSE----TRSERLMEAEKKAASLGPKLT 299
+R I R S G +R ++S ME +KKA + +++
Sbjct: 182 SRYPYK----EFYFFISIIRTNLSRGGQMREVISRLGRAIADSNKMEQKKKAMTSEARMS 237
Query: 300 VPMIIFFLPV 309
++ F PV
Sbjct: 238 AAIVACF-PV 246
>gi|327334809|gb|EGE76520.1| putative bacterial type II secretion system protein F domain
protein [Propionibacterium acnes HL097PA1]
Length = 249
Score = 37.4 bits (85), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 42/187 (22%), Positives = 85/187 (45%), Gaps = 16/187 (8%)
Query: 142 LEYPFQLRVGAVILIGYV---GFCA-PSVWISNLVQKRQSSIKRAWPDALDLLLICVESG 197
+ +PF G +L+G V GF S + Q R + + P+AL +L +E+G
Sbjct: 70 VPWPFPAAAGLSVLVGTVMWWGFGRLESSGHRRMEQHRAAQL----PEALLMLSSAMEAG 125
Query: 198 ISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSF-LPNRQVAFENFYNRTQMDCVRNATQ 256
+ + A+ VAE + G P +E++ + L+ +P+ + + + ++ R+ Q
Sbjct: 126 LPLRSAVTTVAESLEG---PCAEDLRRLASSLAAGVPDSRA----WNDLASVEVWRDPAQ 178
Query: 257 ALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIG 316
+ ++ G I + L ++ + + EK+A G P++ LP +LV +
Sbjct: 179 DVSRAVDSGEGISELLSAHAAQLQVAAAEKTEKRARKAGVDAIGPLVCCHLPAFLLVGVV 238
Query: 317 PAILSII 323
P I ++
Sbjct: 239 PIIAGMV 245
>gi|296118089|ref|ZP_06836671.1| membrane protein [Corynebacterium ammoniagenes DSM 20306]
gi|295968975|gb|EFG82218.1| membrane protein [Corynebacterium ammoniagenes DSM 20306]
Length = 208
Score = 37.4 bits (85), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 65/137 (47%), Gaps = 8/137 (5%)
Query: 187 LDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRT 246
++L + CV +G+SI QA V SV E + +++ L V E +
Sbjct: 74 IELFVACVRAGLSIQQATSAV-------SVVAEEPTVTYWKQVNSLLALGVEPERAWVHM 126
Query: 247 Q-MDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
Q + ++ + ++ S+ G +I + LV R++ A KA G +++P+ +
Sbjct: 127 QPVPGLQELARLVMMSEHSGAAIASGCQRLVDTLRADATSSAIAKAERAGVFISLPLALC 186
Query: 306 FLPVLILVIIGPAILSI 322
FLP I++ + P ++S+
Sbjct: 187 FLPAFIILGLVPVVISL 203
>gi|52425831|ref|YP_088968.1| MaoC protein [Mannheimia succiniciproducens MBEL55E]
gi|52307883|gb|AAU38383.1| MaoC protein [Mannheimia succiniciproducens MBEL55E]
Length = 293
Score = 37.4 bits (85), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 81/188 (43%), Gaps = 27/188 (14%)
Query: 61 TSLQKDSASSRLRTRDS--KSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLV 118
T+L +SA ++ D K++ F K + K L AG N+LL
Sbjct: 18 TALNLNSAKKKINQNDDSFKTINEFFKNIKFKTALWKYYF-----TAGNERNLLRNVLLT 72
Query: 119 VRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKR-QS 177
L++ F L ++I K+ ++ F +G +++ ++ VW L Q+R +
Sbjct: 73 --LIIFFFFHTLNYLYI----KVDKFIF---LGVFLVLFFI-----IVW--KLGQRRNRK 116
Query: 178 SIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQV 237
+ +P+ + +L SG + QAL R +DI GQ + EE L+ +
Sbjct: 117 EFEEMFPEVIQILNSATSSGAGLLQALERCGKDISGQ---IGEEFTAIHKRLAIGEDANS 173
Query: 238 AFENFYNR 245
FE+ Y+R
Sbjct: 174 VFEDSYSR 181
>gi|170700845|ref|ZP_02891834.1| type II secretion system protein [Burkholderia ambifaria IOP40-10]
gi|170134253|gb|EDT02592.1| type II secretion system protein [Burkholderia ambifaria IOP40-10]
Length = 325
Score = 37.4 bits (85), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 57/129 (44%), Gaps = 6/129 (4%)
Query: 153 VILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIG 212
V+ I + C P++++ +R ++R PD D++ + SG S AL V E+
Sbjct: 124 VLPIALLTACLPAMYVMRHRNRRMLKLERQLPDICDMIARALRSGHSFSSALGMVGEEF- 182
Query: 213 GQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQA-LIQSDRYGT--SIG 269
P+ E +T E+++ + A N R +R A LIQ + G +
Sbjct: 183 --PEPMGGEFRITFDEINYGVSLHDALVNLATRVPAHDLRYFVIAVLIQRETGGNLAELL 240
Query: 270 DSLRVLVSE 278
DS+ LV E
Sbjct: 241 DSIASLVRE 249
>gi|258651873|ref|YP_003201029.1| type II secretion system protein [Nakamurella multipartita DSM
44233]
gi|258555098|gb|ACV78040.1| type II secretion system protein [Nakamurella multipartita DSM
44233]
Length = 284
Score = 37.4 bits (85), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 29/48 (60%)
Query: 162 CAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAE 209
P++ +S L KRQ+ ++ WP+ +D L V +G+S+ +AL + +
Sbjct: 87 AVPALMVSRLRHKRQADLRELWPEVVDNLTSGVRAGLSLPEALAAIGD 134
>gi|319795560|ref|YP_004157200.1| type II secretion system f domain [Variovorax paradoxus EPS]
gi|315598023|gb|ADU39089.1| Type II secretion system F domain [Variovorax paradoxus EPS]
Length = 285
Score = 37.4 bits (85), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 41/177 (23%), Positives = 75/177 (42%), Gaps = 17/177 (9%)
Query: 164 PSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEML 223
P+ W + +KR+ I+ PDAL + + +G ++ A++ + D Q PL +E
Sbjct: 96 PARWFAWQRKKRRQQIESELPDALLFIASALRAGSALSVAVQVLVRD---QQGPLGQEFG 152
Query: 224 LTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSER 283
L + E + A + R + AL S G ++ + L+VL R +
Sbjct: 153 LVLKEQRLGVSFDDAIQKMSQRLGIPDFVLVVVALRVSKEVGGNLSEPLQVLAETLRRKA 212
Query: 284 LMEAEKKA-----------ASLGPKLTVPMIIFFLPVLILVI---IGPAILSIIDTM 326
++E +A +L P L + ++ P + L+ IG A+L +I M
Sbjct: 213 ILEGRIQALTAQGRIQGLVMTLFPLLLMGVLYLMQPTMGLLFSTKIGWAVLFVIGVM 269
>gi|91777215|ref|YP_552423.1| putative type II secretion system protein F [Burkholderia
xenovorans LB400]
gi|91689875|gb|ABE33073.1| Putative type II secretion system protein F [Burkholderia
xenovorans LB400]
Length = 282
Score = 37.4 bits (85), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 28/128 (21%), Positives = 60/128 (46%), Gaps = 3/128 (2%)
Query: 164 PSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEML 223
P ++ + +KR ++++ PDAL ++ + +G S AL V + + P+S+E
Sbjct: 92 PKKYLKRMRKKRIEALEKQLPDALLMMSGALRAGASFPAALEAVVYE---TAPPISQEFD 148
Query: 224 LTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSER 283
L + E+ + +A N R + + T A+ + G ++ ++L + R +
Sbjct: 149 LLMREIRLGIDLDIAMRNVEKRIPIPDLLMMTAAVTIAREVGGNLAEALESVARTLREKL 208
Query: 284 LMEAEKKA 291
ME + +A
Sbjct: 209 QMEGKIRA 216
>gi|317403490|gb|EFV83996.1| flp pilus assembly protein TadC [Achromobacter xylosoxidans C54]
Length = 256
Score = 37.4 bits (85), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 30/128 (23%), Positives = 61/128 (47%), Gaps = 2/128 (1%)
Query: 197 GISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLP-NRQVAFENFYNRTQMDCVRNAT 255
G+SIDQ+L+ + ++ Q +P+ L +EL R+ + D +
Sbjct: 121 GLSIDQSLQVLIKEFA-QVLPVLAYELRLASELYVRGRTREQSLARLAAGFDNDDLSAIC 179
Query: 256 QALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVII 315
+ + Q D++G ++ + L R +R +E ++K K+T MI+ LP L++V
Sbjct: 180 RLIAQVDQHGGAVQEPLNRFGERLREKRRLELKEKVGKTTVKMTAVMIVTLLPALLIVTG 239
Query: 316 GPAILSII 323
G ++++
Sbjct: 240 GAGFVAVL 247
>gi|46143338|ref|ZP_00204445.1| COG4965: Flp pilus assembly protein TadB [Actinobacillus
pleuropneumoniae serovar 1 str. 4074]
gi|126208033|ref|YP_001053258.1| tight adherence protein B [Actinobacillus pleuropneumoniae L20]
gi|165975970|ref|YP_001651563.1| Flp pilus assembly protein [Actinobacillus pleuropneumoniae serovar
3 str. JL03]
gi|303252183|ref|ZP_07338351.1| tight adherence protein B [Actinobacillus pleuropneumoniae serovar
2 str. 4226]
gi|307247523|ref|ZP_07529568.1| Tight adherence protein B [Actinobacillus pleuropneumoniae serovar
2 str. S1536]
gi|126096825|gb|ABN73653.1| tight adherence protein B [Actinobacillus pleuropneumoniae serovar
5b str. L20]
gi|165876071|gb|ABY69119.1| Flp pilus assembly protein [Actinobacillus pleuropneumoniae serovar
3 str. JL03]
gi|302648966|gb|EFL79154.1| tight adherence protein B [Actinobacillus pleuropneumoniae serovar
2 str. 4226]
gi|306856026|gb|EFM88184.1| Tight adherence protein B [Actinobacillus pleuropneumoniae serovar
2 str. S1536]
Length = 295
Score = 37.4 bits (85), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 58/250 (23%), Positives = 107/250 (42%), Gaps = 29/250 (11%)
Query: 67 SASSRLRTRDSKSLR--NFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVP 124
+AS+ +T + R F +KLN V++ + +L F S N+ VR ++
Sbjct: 19 TASAWFKTHKKINARETGFTEKLNKTTKKVNDTV--QLWIYYFTSGDKNNL---VRNIII 73
Query: 125 IIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSI-KRAW 183
+ +G+ ++ + +P Q A ++ +GF +W L Q+R + +
Sbjct: 74 HFLIFIGLYYLNA--NYIRFPNQ----AFMIAEVIGFIF-VIW--KLGQRRNRKLFNEKF 124
Query: 184 PDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFY 243
P+ + +L SG+S+ QAL R +DI G P+ EE + L+ + F++ Y
Sbjct: 125 PEVIQVLNSATSSGVSLLQALERCGKDITG---PIGEEFAIIYKRLARGEDVMAVFQDSY 181
Query: 244 NRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSE----TRSERLMEAEKKAASLGPKLT 299
+R I R S G +R ++S ME +KKA + +++
Sbjct: 182 SRYPYK----EFYFFISIIRTNLSRGGQMREVISRLGRAIADSNKMEQKKKAMTSEARMS 237
Query: 300 VPMIIFFLPV 309
++ F PV
Sbjct: 238 AAIVACF-PV 246
>gi|294012232|ref|YP_003545692.1| Flp pilus assembly protein TadB [Sphingobium japonicum UT26S]
gi|292675562|dbj|BAI97080.1| Flp pilus assembly protein TadB [Sphingobium japonicum UT26S]
Length = 333
Score = 37.4 bits (85), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 37/172 (21%), Positives = 79/172 (45%), Gaps = 7/172 (4%)
Query: 150 VGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAE 209
V A+ G +G P + ++ L Q+R+ ++ +P ALD + + +G I AL + +
Sbjct: 129 VMALAFAGALGIALPMMVLTRLAQRRRKKMEEQFPVALDTFVRGLRAGHPIAAALDLLTK 188
Query: 210 DIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIG 269
++ P+ E + + E+++ + + A + R M+ + +L G ++
Sbjct: 189 EM---RDPIGSEFGIVVDEVTYGSDLRDALQRMAERWDMNEMHMFVISLSVQSETGGNLA 245
Query: 270 DSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILV---IIGPA 318
+ L L + R + + +A S ++T M+ LP+L V ++ PA
Sbjct: 246 EILENLSTVIRERASLFMKVRALSSEGRMTAVMLT-ALPILAFVGLFLVNPA 296
>gi|319791196|ref|YP_004152836.1| type II secretion system f domain [Variovorax paradoxus EPS]
gi|315593659|gb|ADU34725.1| Type II secretion system F domain [Variovorax paradoxus EPS]
Length = 285
Score = 37.4 bits (85), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 45/191 (23%), Positives = 81/191 (42%), Gaps = 22/191 (11%)
Query: 150 VGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAE 209
V AV+L + P+ W + +KR+ I+ PDAL + + +G ++ A++ +
Sbjct: 87 VAAVVL-----YLLPARWFAWQRKKRRQQIESELPDALLFIASALRAGSALSVAIQVLVR 141
Query: 210 DIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIG 269
D Q PL +E L + E + A + R + AL S G ++
Sbjct: 142 D---QVGPLGQEFGLVLKEQRLGVSFDDAIQKMSQRLGIPDFVLVVVALRVSKEVGGNLS 198
Query: 270 DSLRVLVSETRSERLMEAEKKA-----------ASLGPKLTVPMIIFFLPVLILVI---I 315
+ L+VL R + ++E KA +L P L + ++ P + L+ I
Sbjct: 199 EPLQVLAETLRRKAILEGRIKALTAQGRIQGLVMTLFPLLLMGVLYLMQPTMSLLFTTTI 258
Query: 316 GPAILSIIDTM 326
G +L++I M
Sbjct: 259 GWVVLTVIAIM 269
>gi|309810754|ref|ZP_07704561.1| type II secretion system F domain protein [Dermacoccus sp.
Ellin185]
gi|308435291|gb|EFP59116.1| type II secretion system F domain protein [Dermacoccus sp.
Ellin185]
Length = 290
Score = 37.4 bits (85), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 65/143 (45%), Gaps = 12/143 (8%)
Query: 154 ILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGG 213
+++ VG AP+ ++ + + AWPDA+D + V +G+SI +ALR+++ + G
Sbjct: 85 VVLACVGGWAPAAFVRGRATSLRRRRREAWPDAVDHVASAVRAGLSIPEALRQLS--LHG 142
Query: 214 QSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDS-- 271
V L E+ A + F++ + + A LI+S R ++G S
Sbjct: 143 PEV-LRED----FAAFARHDAAHGRFDDSLDVLKARLADPAADRLIESLRLARNVGGSDV 197
Query: 272 ---LRVLVSETRSERLMEAEKKA 291
LR L S R + AE A
Sbjct: 198 GRLLRTLSSFLREDASTRAELAA 220
>gi|172065280|ref|YP_001815992.1| type II secretion system protein [Burkholderia ambifaria MC40-6]
gi|171997522|gb|ACB68439.1| type II secretion system protein [Burkholderia ambifaria MC40-6]
Length = 325
Score = 37.4 bits (85), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 57/129 (44%), Gaps = 6/129 (4%)
Query: 153 VILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIG 212
V+ I + C P++++ +R ++R PD D++ + SG S AL V E+
Sbjct: 124 VLPIALLTACLPAMYVMRHRNRRMLKLERQLPDICDMIARALRSGHSFSSALGMVGEEFP 183
Query: 213 GQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQA-LIQSDRYGT--SIG 269
P+ E +T E+++ + A N R +R A LIQ + G +
Sbjct: 184 D---PMGGEFRITFDEINYGVSLHDALVNLATRVPAHDLRYFVIAVLIQRETGGNLAELL 240
Query: 270 DSLRVLVSE 278
DS+ LV E
Sbjct: 241 DSIASLVRE 249
>gi|76818607|ref|YP_336474.1| Flp pilus assembly protein TadB [Burkholderia pseudomallei 1710b]
gi|167851190|ref|ZP_02476698.1| Flp pilus assembly protein TadB [Burkholderia pseudomallei B7210]
gi|167899820|ref|ZP_02487221.1| Flp pilus assembly protein TadB [Burkholderia pseudomallei 7894]
gi|167916484|ref|ZP_02503575.1| Flp pilus assembly protein TadB [Burkholderia pseudomallei 112]
gi|167924341|ref|ZP_02511432.1| Flp pilus assembly protein TadB [Burkholderia pseudomallei BCC215]
gi|254187128|ref|ZP_04893643.1| type II secretion system protein [Burkholderia pseudomallei Pasteur
52237]
gi|254263188|ref|ZP_04954053.1| type II secretion system protein [Burkholderia pseudomallei 1710a]
gi|254296490|ref|ZP_04963946.1| type II secretion system protein [Burkholderia pseudomallei 406e]
gi|76583080|gb|ABA52554.1| Flp pilus assembly protein TadB [Burkholderia pseudomallei 1710b]
gi|157806462|gb|EDO83632.1| type II secretion system protein [Burkholderia pseudomallei 406e]
gi|157934811|gb|EDO90481.1| type II secretion system protein [Burkholderia pseudomallei Pasteur
52237]
gi|254214190|gb|EET03575.1| type II secretion system protein [Burkholderia pseudomallei 1710a]
Length = 325
Score = 37.4 bits (85), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 36/170 (21%), Positives = 77/170 (45%), Gaps = 17/170 (10%)
Query: 162 CAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQ-SVPLSE 220
C P++++ +R ++R PDA D++ + +G + A+ V GG+ + P+
Sbjct: 133 CLPTLFVLRCRTRRLRKLERQLPDACDMIARALRAGHAFSSAISMV----GGEFAEPMGG 188
Query: 221 EMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETR 280
E +T E+++ + Q A N R + +R A++ G ++ + L + R
Sbjct: 189 EFRITFDEINYGVSLQEALLNLATRVPVSDLRYFVIAVLIQRETGGNLAELLDGIAQLIR 248
Query: 281 SE-------RLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSII 323
R++ AE K ++L + ++ F +L I+ P +S++
Sbjct: 249 ERFKLFDKIRVLSAEGKLSAL-----ILTLLPFGTAALLSIMNPDFISVL 293
>gi|134299963|ref|YP_001113459.1| type II secretion system protein [Desulfotomaculum reducens MI-1]
gi|134052663|gb|ABO50634.1| type II secretion system protein [Desulfotomaculum reducens MI-1]
Length = 323
Score = 37.0 bits (84), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 45/96 (46%), Gaps = 3/96 (3%)
Query: 154 ILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGG 213
++ G +G P ++I QKR + DAL ++ + SG S QA+ V +++
Sbjct: 123 VVAGLLGLIVPFLFIRIKRQKRLAKFNSQISDALVIMSNSLRSGFSFLQAMDMVRKELPN 182
Query: 214 QSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMD 249
P+S+E T E++ + A EN R + D
Sbjct: 183 ---PISKEFGRTFQEMNLGTQAEEALENMAQRVKSD 215
>gi|53723214|ref|YP_112199.1| hypothetical protein BPSS2197 [Burkholderia pseudomallei K96243]
gi|126444529|ref|YP_001064083.1| type II secretion system protein [Burkholderia pseudomallei 668]
gi|126455490|ref|YP_001076996.1| type II secretion system protein [Burkholderia pseudomallei 1106a]
gi|167725255|ref|ZP_02408491.1| Flp pilus assembly protein TadB [Burkholderia pseudomallei DM98]
gi|167744182|ref|ZP_02416956.1| Flp pilus assembly protein TadB [Burkholderia pseudomallei 14]
gi|167821381|ref|ZP_02453061.1| Flp pilus assembly protein TadB [Burkholderia pseudomallei 91]
gi|167829723|ref|ZP_02461194.1| Flp pilus assembly protein TadB [Burkholderia pseudomallei 9]
gi|226194129|ref|ZP_03789729.1| type II secretion system protein [Burkholderia pseudomallei
Pakistan 9]
gi|237509857|ref|ZP_04522572.1| putative membrane protein [Burkholderia pseudomallei MSHR346]
gi|242313100|ref|ZP_04812117.1| type II secretion system protein [Burkholderia pseudomallei 1106b]
gi|52213628|emb|CAH39682.1| putative membrane protein [Burkholderia pseudomallei K96243]
gi|126224020|gb|ABN87525.1| type II secretion system protein [Burkholderia pseudomallei 668]
gi|126229258|gb|ABN92671.1| type II secretion system protein [Burkholderia pseudomallei 1106a]
gi|225933822|gb|EEH29809.1| type II secretion system protein [Burkholderia pseudomallei
Pakistan 9]
gi|235002062|gb|EEP51486.1| putative membrane protein [Burkholderia pseudomallei MSHR346]
gi|242136339|gb|EES22742.1| type II secretion system protein [Burkholderia pseudomallei 1106b]
Length = 325
Score = 37.0 bits (84), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 36/170 (21%), Positives = 77/170 (45%), Gaps = 17/170 (10%)
Query: 162 CAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQ-SVPLSE 220
C P++++ +R ++R PDA D++ + +G + A+ V GG+ + P+
Sbjct: 133 CLPTLFVLRCRTRRLRKLERQLPDACDMIARALRAGHAFSSAISMV----GGEFAEPMGG 188
Query: 221 EMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETR 280
E +T E+++ + Q A N R + +R A++ G ++ + L + R
Sbjct: 189 EFRITFDEINYGVSLQEALLNLATRVPVSDLRYFVIAVLIQRETGGNLAELLDGIAQLIR 248
Query: 281 SE-------RLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSII 323
R++ AE K ++L + ++ F +L I+ P +S++
Sbjct: 249 ERFKLFDKIRVLSAEGKLSAL-----ILTLLPFGTAALLSIMNPDFISVL 293
>gi|217424158|ref|ZP_03455657.1| type II secretion system protein [Burkholderia pseudomallei 576]
gi|254192376|ref|ZP_04898815.1| type II secretion system protein [Burkholderia pseudomallei S13]
gi|169649134|gb|EDS81827.1| type II secretion system protein [Burkholderia pseudomallei S13]
gi|217392623|gb|EEC32646.1| type II secretion system protein [Burkholderia pseudomallei 576]
Length = 330
Score = 37.0 bits (84), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 36/170 (21%), Positives = 77/170 (45%), Gaps = 17/170 (10%)
Query: 162 CAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQ-SVPLSE 220
C P++++ +R ++R PDA D++ + +G + A+ V GG+ + P+
Sbjct: 138 CLPTLFVLRCRTRRLRKLERQLPDACDMIARALRAGHAFSSAISMV----GGEFAEPMGG 193
Query: 221 EMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETR 280
E +T E+++ + Q A N R + +R A++ G ++ + L + R
Sbjct: 194 EFRITFDEINYGVSLQEALLNLATRVPVSDLRYFVIAVLIQRETGGNLAELLDGIAQLIR 253
Query: 281 SE-------RLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSII 323
R++ AE K ++L + ++ F +L I+ P +S++
Sbjct: 254 ERFKLFDKIRVLSAEGKLSAL-----ILTLLPFGTAALLSIMNPDFISVL 298
>gi|134281818|ref|ZP_01768525.1| type II secretion system protein [Burkholderia pseudomallei 305]
gi|167908137|ref|ZP_02495342.1| Flp pilus assembly protein TadB [Burkholderia pseudomallei NCTC
13177]
gi|134246880|gb|EBA46967.1| type II secretion system protein [Burkholderia pseudomallei 305]
Length = 325
Score = 37.0 bits (84), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 36/170 (21%), Positives = 77/170 (45%), Gaps = 17/170 (10%)
Query: 162 CAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQ-SVPLSE 220
C P++++ +R ++R PDA D++ + +G + A+ V GG+ + P+
Sbjct: 133 CLPTLFVLRCRTRRLRKLERQLPDACDMIARALRAGHAFSSAISMV----GGEFAEPMGG 188
Query: 221 EMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETR 280
E +T E+++ + Q A N R + +R A++ G ++ + L + R
Sbjct: 189 EFRITFDEINYGVSLQEALLNLATRVPVSDLRYFVIAVLIQRETGGNLAELLDGIAQLIR 248
Query: 281 SE-------RLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSII 323
R++ AE K ++L + ++ F +L I+ P +S++
Sbjct: 249 ERFKLFDKIRVLSAEGKLSAL-----ILTLLPFGTAALLSIMNPDFISVL 293
>gi|254173151|ref|ZP_04879824.1| Bacterial type II secretion system protein F domain [Thermococcus
sp. AM4]
gi|214032560|gb|EEB73389.1| Bacterial type II secretion system protein F domain [Thermococcus
sp. AM4]
Length = 358
Score = 37.0 bits (84), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 30/143 (20%), Positives = 70/143 (48%), Gaps = 11/143 (7%)
Query: 134 WIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISN----LVQKRQSSIKRAWPDALDL 189
+ F + LLE F +++G +GF +++ N + ++R + +++A P L
Sbjct: 132 FAFAFGLLLEMDFF----TSMMLGLLGFIGGFLYMRNYPRIVWRRRVAEVEKALPYVLRH 187
Query: 190 LLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMD 249
+ + +G+ I +AL VA+ G + SEE L + ++ + + A E F + +
Sbjct: 188 IASLLSAGVGIAEALVSVAKADYGVA---SEEFELIVRDMRAGASFEEALERFEEKMGSE 244
Query: 250 CVRNATQALIQSDRYGTSIGDSL 272
V + ++++ ++G ++ + L
Sbjct: 245 SVSRVVKQILRAIKFGGNLAEIL 267
>gi|307245408|ref|ZP_07527496.1| Tight adherence protein B [Actinobacillus pleuropneumoniae serovar
1 str. 4074]
gi|307254363|ref|ZP_07536201.1| Tight adherence protein B [Actinobacillus pleuropneumoniae serovar
9 str. CVJ13261]
gi|307258821|ref|ZP_07540553.1| Tight adherence protein B [Actinobacillus pleuropneumoniae serovar
11 str. 56153]
gi|306853749|gb|EFM85966.1| Tight adherence protein B [Actinobacillus pleuropneumoniae serovar
1 str. 4074]
gi|306862662|gb|EFM94618.1| Tight adherence protein B [Actinobacillus pleuropneumoniae serovar
9 str. CVJ13261]
gi|306867172|gb|EFM99028.1| Tight adherence protein B [Actinobacillus pleuropneumoniae serovar
11 str. 56153]
Length = 295
Score = 37.0 bits (84), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 63/147 (42%), Gaps = 13/147 (8%)
Query: 168 ISNLVQKRQSSI-KRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTI 226
I L Q+R + +P+ + +L SG+S+ QAL R +DI G P+ EE +
Sbjct: 108 IWKLGQRRNRKLFNEKFPEVIQVLNSATSSGVSLLQALERCGKDITG---PIGEEFTIIY 164
Query: 227 AELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSE----TRSE 282
L+ + F++ Y+R I R S G +R ++S
Sbjct: 165 KRLARGEDVMAVFQDSYSRYPYK----EFYFFISIIRTNLSRGGQMREVISRLGRAIADS 220
Query: 283 RLMEAEKKAASLGPKLTVPMIIFFLPV 309
ME +KKA + +++ ++ F PV
Sbjct: 221 NKMEQKKKAMTSEARMSAAIVACF-PV 246
>gi|253996762|ref|YP_003048826.1| type II secretion system protein [Methylotenera mobilis JLW8]
gi|253983441|gb|ACT48299.1| type II secretion system protein [Methylotenera mobilis JLW8]
Length = 322
Score = 37.0 bits (84), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 83/183 (45%), Gaps = 23/183 (12%)
Query: 154 ILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGG 213
I++ V C P + + + QKR ++I++ P ALDL+ + +G + AL+ V ++
Sbjct: 122 IIVAAVAACLPLLHMFSAKQKRINTIEQQLPSALDLMGRAMVAGHAFPSALQMVGTEM-- 179
Query: 214 QSVPLSEEMLLTIAELSF-LPNRQVAFENFYNRT-QMDCVRNATQALIQSDRYGT----- 266
P++ E + E+++ +P + A N R D LIQ + G
Sbjct: 180 -PEPIASEFRIVFDEINYGIPTSE-ALMNLIQRVPSTDVSYFVIAVLIQRETGGNLAELL 237
Query: 267 -SIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPV---LILVIIGPAILSI 322
+I + +R + S R++ AE + ++ I+ LP +L ++ P LSI
Sbjct: 238 GNISELIRARLKLLGSVRVLSAEGRLSA--------WILTLLPFALGAVLQLVNPKFLSI 289
Query: 323 IDT 325
+ T
Sbjct: 290 LWT 292
>gi|15963898|ref|NP_384251.1| hypothetical protein SMc02821 [Sinorhizobium meliloti 1021]
gi|307315795|ref|ZP_07595309.1| Type II secretion system F domain protein [Sinorhizobium meliloti
BL225C]
gi|15073073|emb|CAC41532.1| Hypothetical transmembrane protein [Sinorhizobium meliloti 1021]
gi|306898563|gb|EFN29236.1| Type II secretion system F domain protein [Sinorhizobium meliloti
BL225C]
Length = 336
Score = 37.0 bits (84), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 39/165 (23%), Positives = 74/165 (44%), Gaps = 6/165 (3%)
Query: 151 GAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAED 210
V LIG G P + ++V++R +P++LD+++ ++SG+ ++ ALR +A D
Sbjct: 135 AGVALIGAAGL--PRWIVGSMVKRRCRKFLDEFPNSLDVMVRSIKSGLPLNDALRLIASD 192
Query: 211 IGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGD 270
GQ P+ E + N A + + V + + G ++ +
Sbjct: 193 --GQE-PVRTEFRRVVESQQVGLNVPEACARMIHSIPLPEVNFFAIVIAIQAQAGGNLSE 249
Query: 271 SLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVII 315
+L L R R M+A+ A S+ K + II LP ++ ++
Sbjct: 250 ALGNLSKVLRERRKMKAKVSALSMEAKASA-CIIGALPFIVATLV 293
>gi|41615060|ref|NP_963558.1| hypothetical protein NEQ267 [Nanoarchaeum equitans Kin4-M]
gi|40068784|gb|AAR39119.1| NEQ267 [Nanoarchaeum equitans Kin4-M]
Length = 346
Score = 37.0 bits (84), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 72/157 (45%), Gaps = 7/157 (4%)
Query: 163 APSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAE-DIGGQSVPLSEE 221
AP + ++ + Q +++ +P L L V SGIS+ AL+ A D G + L +
Sbjct: 51 APYMVYQYMIAREQKALESVYPSFLRDLAESVSSGISLIYALKLTANADYGALNKYLRKL 110
Query: 222 MLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRS 281
++ + F P F ++ + +R A + L++ + G I +LR+L
Sbjct: 111 VIWLSWGIPF-PKAMERFNKYFYFS--PAIRRANEILLEIYKSGGDIVKTLRLLAENI-- 165
Query: 282 ERLMEAEKKAAS-LGPKLTVPMIIFFLPVLILVIIGP 317
E+ E K S + K+ V +IF + V I VII P
Sbjct: 166 EKTSEMYKDIISQVKSKVFVIYMIFLILVAIAVIIKP 202
>gi|119715489|ref|YP_922454.1| type II secretion system protein [Nocardioides sp. JS614]
gi|119536150|gb|ABL80767.1| type II secretion system protein [Nocardioides sp. JS614]
Length = 284
Score = 37.0 bits (84), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 28/52 (53%)
Query: 153 VILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQAL 204
+ G +G AP +S ++RQ + WP+A+D L V +G+S+ AL
Sbjct: 78 ALAFGLMGAWAPVGIVSGRARRRQRELAEVWPEAVDNLTSAVRAGMSLPDAL 129
>gi|307261000|ref|ZP_07542682.1| Tight adherence protein B [Actinobacillus pleuropneumoniae serovar
12 str. 1096]
gi|306869302|gb|EFN01097.1| Tight adherence protein B [Actinobacillus pleuropneumoniae serovar
12 str. 1096]
Length = 199
Score = 37.0 bits (84), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 63/147 (42%), Gaps = 13/147 (8%)
Query: 168 ISNLVQKRQSSI-KRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTI 226
I L Q+R + +P+ + +L SG+S+ QAL R +DI G P+ EE +
Sbjct: 12 IWKLGQRRNRKLFNEKFPEVIQVLNSATSSGVSLLQALERCGKDITG---PIGEEFTIIY 68
Query: 227 AELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSE----TRSE 282
L+ + F++ Y+R I R S G +R ++S
Sbjct: 69 KRLARGEDVMAVFQDSYSRYPY----KEFYFFISIIRTNLSRGGQMREVISRLGRAIADS 124
Query: 283 RLMEAEKKAASLGPKLTVPMIIFFLPV 309
ME +KKA + +++ ++ F PV
Sbjct: 125 NKMEQKKKAMTSEARMSAAIVACF-PV 150
>gi|148258239|ref|YP_001242824.1| putative pilus assembly protein [Bradyrhizobium sp. BTAi1]
gi|146410412|gb|ABQ38918.1| putative pilus assembly protein [Bradyrhizobium sp. BTAi1]
Length = 324
Score = 37.0 bits (84), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 36/156 (23%), Positives = 71/156 (45%), Gaps = 5/156 (3%)
Query: 160 GFCAPSVWISNLVQKR-QSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPL 218
GF P WI N ++KR + A PDA+D+++ +++G+ + ++++ VA D PL
Sbjct: 130 GFGLPR-WILNFLKKRREKKFLAALPDAVDVIVRGIKAGLPLFESIKVVAAD---APEPL 185
Query: 219 SEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSE 278
E L I + A Y R + + + G ++ ++L L
Sbjct: 186 RSEFLAIIETQAIGMPLGEACARLYERMPLPEANFFGIVVAIQQKSGGNLSEALGNLSKV 245
Query: 279 TRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVI 314
R + M + +A S+ K + +I P+++L++
Sbjct: 246 LRDRKKMAEKIQAMSMEAKASAGIIGSLPPIVMLLV 281
>gi|296122065|ref|YP_003629843.1| type II secretion system protein [Planctomyces limnophilus DSM
3776]
gi|296014405|gb|ADG67644.1| type II secretion system protein [Planctomyces limnophilus DSM
3776]
Length = 285
Score = 37.0 bits (84), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 53/208 (25%), Positives = 94/208 (45%), Gaps = 25/208 (12%)
Query: 125 IIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWP 184
++ +LG I + G+ +L+ F L VGF P ++ + RQ+ I P
Sbjct: 58 LMLCLLGGITVGGFIFVLQENFL----TTALAAVVGFLLPVFFLMYVRSSRQNQILGQLP 113
Query: 185 DALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSF-LPNRQVAFENFY 243
L+ L +G S++Q L+ VA D PL +E+ L + + +P R A +
Sbjct: 114 AMLEELARAATTGRSVEQCLQLVAADT---PSPLGDELQLCVRRMQMGMPMRD-AVADLP 169
Query: 244 NRTQMDCVRNATQALIQSDRYGTSIGDSLRVL--VSETRSERLMEAEK-KAASLGPKLTV 300
+RT + +R L + G GD + VL +S+T +RL + +A + + T
Sbjct: 170 DRTGLMTLRLFCMTLGVHQQTG---GDLVWVLEQLSKTIRDRLQYLGRLRAMTAASRAT- 225
Query: 301 PMIIFFLPVLILVIIGPAILSIIDTMKD 328
L++V++ P +L I T++D
Sbjct: 226 --------ALLMVVLPPGVL-IFFTLRD 244
>gi|319937914|ref|ZP_08012314.1| hypothetical protein HMPREF9488_03150 [Coprobacillus sp. 29_1]
gi|319806820|gb|EFW03459.1| hypothetical protein HMPREF9488_03150 [Coprobacillus sp. 29_1]
Length = 291
Score = 36.6 bits (83), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 31/156 (19%), Positives = 67/156 (42%), Gaps = 8/156 (5%)
Query: 164 PSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEML 223
P + N++ + S ++ P ++ +++ ++ G+S++ A G + E
Sbjct: 131 PIFYYQNIISTKNSQFDKSLPMFINQVILSIKCGVSLENAFGFALR--GMDKTLVQREYA 188
Query: 224 LTIAELSFLPNR-QVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSE 282
+AEL + F N R + ++ + G + D L+
Sbjct: 189 KMVAELKIYSDDIPKVFMNLNRRVHTEECERFCNIIVSGLKNGNKMSDILKSEYERISDN 248
Query: 283 RLMEAEKKAAS---LGPKLTVPMIIFFLPVLILVII 315
+++ +KKA S LG + + +I F+PV++L+II
Sbjct: 249 QIVALKKKADSKKNLGTAINILLI--FVPVILLLII 282
>gi|307320430|ref|ZP_07599847.1| Type II secretion system F domain protein [Sinorhizobium meliloti
AK83]
gi|306893996|gb|EFN24765.1| Type II secretion system F domain protein [Sinorhizobium meliloti
AK83]
Length = 336
Score = 36.6 bits (83), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 74/164 (45%), Gaps = 6/164 (3%)
Query: 152 AVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDI 211
V LIG G P + ++V++R +P++LD+++ ++SG+ ++ ALR +A D
Sbjct: 136 GVALIGAAGL--PRWIVGSMVKRRCRKFLDEFPNSLDVMVRSIKSGLPLNDALRLIASD- 192
Query: 212 GGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDS 271
GQ P+ E + N A + + V + + G ++ ++
Sbjct: 193 -GQE-PVRTEFRRVVESQQVGLNVPEACARMIHSIPLPEVNFFAIVIAIQAQAGGNLSEA 250
Query: 272 LRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVII 315
L L R R M+A+ A S+ K + II LP ++ ++
Sbjct: 251 LGNLSKVLRERRKMKAKVGALSMEAKASA-CIIGALPFIVATLV 293
>gi|56697923|ref|YP_168294.1| TadC family type II/IV secretion system protein [Ruegeria pomeroyi
DSS-3]
gi|56679660|gb|AAV96326.1| type II/IV secretion system protein, TadC subfamily [Ruegeria
pomeroyi DSS-3]
Length = 322
Score = 36.6 bits (83), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 36/162 (22%), Positives = 75/162 (46%), Gaps = 7/162 (4%)
Query: 120 RLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSI 179
R ++ I+FL+ GI ++ G + +LR + IG A +W++ +KR S I
Sbjct: 92 RQLIMIMFLLAGIAFV-GLSIGTQTEVKLRAAISVAIG---IAAVYLWVNQKAKKRLSLI 147
Query: 180 KRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAF 239
+ PD+++L++ + G + A++ VA++ P++ E + E ++ A
Sbjct: 148 EEQLPDSVELMVRSLRVGHPLVSAIQIVAKE---SEDPIATEFGIIADEAAYGREVGEAL 204
Query: 240 ENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRS 281
+ R M +R + A+ + G ++ + L L R+
Sbjct: 205 KEMAERLDMQDLRFLSVAVTIQQQSGGNLAEVLAGLAKVIRA 246
>gi|163738366|ref|ZP_02145781.1| type II secretion system protein [Phaeobacter gallaeciensis BS107]
gi|163742217|ref|ZP_02149605.1| type II/IV secretion system protein, TadC subfamily [Phaeobacter
gallaeciensis 2.10]
gi|161384547|gb|EDQ08928.1| type II/IV secretion system protein, TadC subfamily [Phaeobacter
gallaeciensis 2.10]
gi|161388287|gb|EDQ12641.1| type II secretion system protein [Phaeobacter gallaeciensis BS107]
Length = 322
Score = 36.6 bits (83), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 32/139 (23%), Positives = 61/139 (43%), Gaps = 8/139 (5%)
Query: 143 EYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQ 202
E P +L +I +G V F W++ KR + I+ PDA++L++ + G
Sbjct: 116 ELPLRLLASVIIGVGAVFF-----WVNKKAAKRMAMIEEQLPDAVELMVRSLRVGHPFSS 170
Query: 203 ALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSD 262
A++ VA ++ PL+ E + E ++ + A + R M +R A+
Sbjct: 171 AVQIVANEV---EDPLATEFGVIADESAYGRDVGEALKEMAERLDMQDMRFLAVAVTIQQ 227
Query: 263 RYGTSIGDSLRVLVSETRS 281
+ G ++ + L L R+
Sbjct: 228 QSGGNLAEVLAGLAKVIRA 246
>gi|290958553|ref|YP_003489735.1| type II secretion system F protein [Streptomyces scabiei 87.22]
gi|260648079|emb|CBG71187.1| putative type II secretion system F protein [Streptomyces scabiei
87.22]
Length = 263
Score = 36.6 bits (83), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 56/128 (43%), Gaps = 6/128 (4%)
Query: 193 CVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVR 252
C+ +G S A R V E +GG P+ E + AE+ + A E + +
Sbjct: 131 CITAGASPVVAARAVGEALGG---PVGESLARGSAEVRL--GSEPA-EAWRGLAALPGAG 184
Query: 253 NATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLIL 312
+ L ++D G + L +E R++R A ++A +T P+ + FLP I
Sbjct: 185 ALARLLERADESGVPAASPVARLAAEARADRGRSATERARRAAVMITAPVGLCFLPAFIT 244
Query: 313 VIIGPAIL 320
V + P ++
Sbjct: 245 VGVLPVVI 252
>gi|251795274|ref|YP_003010005.1| type II secretion system protein [Paenibacillus sp. JDR-2]
gi|247542900|gb|ACS99918.1| type II secretion system protein [Paenibacillus sp. JDR-2]
Length = 282
Score = 36.6 bits (83), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 68/161 (42%), Gaps = 8/161 (4%)
Query: 164 PSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEML 223
P + LV++R+ +I P+AL L++ V +G + QA R E PL +E
Sbjct: 123 PFMEAGRLVERRKQAIVSELPEALSKLMLLVGAGEPVLQAFSRCLEGKDPAVQPLYKEWD 182
Query: 224 LTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGD----SLRVLVSET 279
+ L + A E F + V T ++ + R G GD +LR +
Sbjct: 183 RVVIALRNGESFSTALERFNRSCAVQEVSIFTTVILLNYRRG---GDQFVLALREISYSL 239
Query: 280 RSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAIL 320
+R A + KL P++ L VL++ + PA+L
Sbjct: 240 WEKRKAVARSRGEEASSKLVFPLVGILL-VLMVFVAAPAML 279
>gi|89068022|ref|ZP_01155439.1| type II/IV secretion system protein, TadC subfamily protein
[Oceanicola granulosus HTCC2516]
gi|89046261|gb|EAR52318.1| type II/IV secretion system protein, TadC subfamily protein
[Oceanicola granulosus HTCC2516]
Length = 322
Score = 36.6 bits (83), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 41/193 (21%), Positives = 84/193 (43%), Gaps = 10/193 (5%)
Query: 126 IFLILGIIWIFGYDKLL---EYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRA 182
+ +++G++ + L E +R+ + +G G +W+++ +KR S I+
Sbjct: 94 LIMVMGLLSAVAFAGLTLQTEAGLPVRLAVAVAMGVSGVF---MWVNSKAKKRMSMIEEQ 150
Query: 183 WPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENF 242
PDA++L++ + G A+ VA+++ PL EM + E ++ + + +
Sbjct: 151 LPDAVELMVRSLRVGHPFSSAINIVAKEVAD---PLGTEMGVIADEAAYGRDMGESLKAM 207
Query: 243 YNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPM 302
R M +R A+ G ++ + L L R+ + KA + K + M
Sbjct: 208 AERMDMQDLRFLAVAVTIQQTSGGNLAEILDGLAKVIRARFRLFRRVKAITAEAKWS-GM 266
Query: 303 IIFFLPVLILVII 315
+ P+L LV I
Sbjct: 267 FLSGFPLLALVAI 279
>gi|325066927|ref|ZP_08125600.1| Type II secretion system F domain [Actinomyces oris K20]
Length = 314
Score = 36.6 bits (83), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 39/165 (23%), Positives = 72/165 (43%), Gaps = 13/165 (7%)
Query: 160 GFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLS 219
G A W++ V KR S I+ PD ++LL + V +G A+ R+ G L
Sbjct: 151 GAAARDWWLTRAVAKRLSRIEAQLPDVVELLALAVGAGQGPVPAIERIVALGRGD---LV 207
Query: 220 EEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSET 279
+E+ T+ ++ A + R V +A+I + GT + + LR ++
Sbjct: 208 DELSSTLTDIRSGTVLSTALDRMERRVGSVHVTRLCEAIIVALERGTPLAEVLRSQAADV 267
Query: 280 RS---ERLME--AEKKAASLGPKLTVPMIIFFLPVLILVIIGPAI 319
R + LME ++ A + VP++ LP+ ++ + P +
Sbjct: 268 REAARQDLMEEGGRREIAQM-----VPVVFLVLPITVVFALFPGL 307
>gi|331089203|ref|ZP_08338105.1| hypothetical protein HMPREF1025_01688 [Lachnospiraceae bacterium
3_1_46FAA]
gi|330405755|gb|EGG85284.1| hypothetical protein HMPREF1025_01688 [Lachnospiraceae bacterium
3_1_46FAA]
Length = 425
Score = 36.6 bits (83), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 46/210 (21%), Positives = 89/210 (42%), Gaps = 29/210 (13%)
Query: 132 IIWIFGYDKLLEYPFQLRVGAVILIGYVGFC-----APSVWISNLVQKRQSSIKRAWPDA 186
+IW +G Q R ++++G +GF + S +K +K +P
Sbjct: 224 VIWAYG--------VQTRAYGILVMG-IGFAVFVIISSSQKEKEEKKKEFREMKLDYPQI 274
Query: 187 LDLLLICVESGISIDQALRRVA----------EDIGGQSVPLS---EEMLLTIAELSFLP 233
++ + ++SG++I +A ++A E I ++ EEM+ + ++S
Sbjct: 275 INKFNLYIKSGMTIRKAWFKIAGEYEKDQKEKEQISAKACGRKKAYEEMVNVMYKISGGA 334
Query: 234 NRQVAFENFYNRTQMDCVRNATQALIQSDRYGT-SIGDSLRVLVSETRSERLMEAEKKAA 292
+ +E + R + R L Q+ R GT + + L + +R A+K
Sbjct: 335 SEGECYEEYGIRCNLSEYRKFGMMLSQNLRKGTRGLTELLEREAEDAFEQRKNLAKKAGE 394
Query: 293 SLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
G KL +P+ + + V +VI+ PA SI
Sbjct: 395 EAGTKLMIPLFLMLIIVFAIVIV-PAFFSI 423
>gi|317500897|ref|ZP_07959108.1| hypothetical protein HMPREF1026_01051 [Lachnospiraceae bacterium
8_1_57FAA]
gi|316897695|gb|EFV19755.1| hypothetical protein HMPREF1026_01051 [Lachnospiraceae bacterium
8_1_57FAA]
Length = 425
Score = 36.6 bits (83), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 46/210 (21%), Positives = 89/210 (42%), Gaps = 29/210 (13%)
Query: 132 IIWIFGYDKLLEYPFQLRVGAVILIGYVGFC-----APSVWISNLVQKRQSSIKRAWPDA 186
+IW +G Q R ++++G +GF + S +K +K +P
Sbjct: 224 VIWAYG--------VQTRAYGILVMG-IGFAVFVIISSSQKEKEEKKKEFREMKLDYPQI 274
Query: 187 LDLLLICVESGISIDQALRRVA----------EDIGGQSVPLS---EEMLLTIAELSFLP 233
++ + ++SG++I +A ++A E I ++ EEM+ + ++S
Sbjct: 275 INKFNLYIKSGMTIRKAWFKIAGEYEKDQKEKEQISAKACGRKKAYEEMVNVMYKISGGA 334
Query: 234 NRQVAFENFYNRTQMDCVRNATQALIQSDRYGT-SIGDSLRVLVSETRSERLMEAEKKAA 292
+ +E + R + R L Q+ R GT + + L + +R A+K
Sbjct: 335 SEGECYEEYGIRCNLSEYRKFGMMLSQNLRKGTRGLTELLEREAEDAFEQRKNLAKKAGE 394
Query: 293 SLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
G KL +P+ + + V +VI+ PA SI
Sbjct: 395 EAGTKLMIPLFLMLIIVFAIVIV-PAFFSI 423
>gi|297571776|ref|YP_003697550.1| type II secretion system protein F [Arcanobacterium haemolyticum
DSM 20595]
gi|296932123|gb|ADH92931.1| Type II secretion system F domain protein [Arcanobacterium
haemolyticum DSM 20595]
Length = 291
Score = 36.6 bits (83), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 35/171 (20%), Positives = 69/171 (40%), Gaps = 14/171 (8%)
Query: 156 IGYVGFCAPSVW----ISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDI 211
+G+ G C ++W ++ + + PD ++L+ + V +G + A+ R
Sbjct: 122 VGFGGVCG-ALWADYRLTTAARATSRILTAQLPDVIELIALAVSAGEPVRPAIERAVRSG 180
Query: 212 GGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDS 271
G PL E + T+A + + A + R V T +LI + G + +
Sbjct: 181 SG---PLIEHLRTTLAHVHAGKSLPAALSDLSVRAGNQNVSRFTDSLITAMEQGGGLAQT 237
Query: 272 LR---VLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAI 319
L + L+E KA + +P++ LP+ ++ I PA+
Sbjct: 238 LHNQARDARDAARRDLLEEGGKAEI---SMMIPVVFLILPITVIFTIFPAL 285
>gi|296453319|ref|YP_003660462.1| hypothetical protein BLJ_0138 [Bifidobacterium longum subsp. longum
JDM301]
gi|296182750|gb|ADG99631.1| conserved hypothetical membrane protein with unknown function
[Bifidobacterium longum subsp. longum JDM301]
Length = 200
Score = 36.6 bits (83), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 64/152 (42%), Gaps = 17/152 (11%)
Query: 187 LDLLLICVESGISIDQALRRVAEDIGG--------------QSVPLSEEMLLTIA-ELSF 231
L +L + + G SI +AL V + +GG + VP ++ +A +
Sbjct: 50 LRMLQVSLRQGSSIPRALDMVGKAVGGDCGARMSEVGNSLTRGVPWADAWHAAMAVQHEG 109
Query: 232 LPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKA 291
P + N N TQ D + AL S +G G L + + + E+ A
Sbjct: 110 APADSPSKGN-TNTTQRD-LGLLQSALESSWTHGDMPGVRLESAIEQLDRDERAAIERNA 167
Query: 292 ASLGPKLTVPMIIFFLPVLILVIIGPAILSII 323
A L KL +P + FLP +LV + PAI S +
Sbjct: 168 AKLSVKLLMPTGLCFLPAFVLVGVIPAIASFM 199
>gi|256824884|ref|YP_003148844.1| Flp pilus assembly protein TadB [Kytococcus sedentarius DSM 20547]
gi|256688277|gb|ACV06079.1| Flp pilus assembly protein TadB [Kytococcus sedentarius DSM 20547]
Length = 309
Score = 36.6 bits (83), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 36/155 (23%), Positives = 67/155 (43%), Gaps = 3/155 (1%)
Query: 168 ISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIA 227
++ V +R+ + +P +LL + V +G S AL RVA G+ LS E+ +
Sbjct: 154 LARRVAQRERRVVEEFPAVAELLALAVAAGESATAALERVARLSRGE---LSRELTQALG 210
Query: 228 ELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEA 287
E + A E RT++ V +I + GT + D LR ++ R
Sbjct: 211 EARTGASLPTALEGIAERTEVPSVARFVDGVIIAVERGTPLADVLRAQATDAREAARQHV 270
Query: 288 EKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
+ + +P++ F LPV ++ + P + ++
Sbjct: 271 IAEGGRREILMMIPVVFFVLPVTVVFAMYPGLGAL 305
>gi|18977364|ref|NP_578721.1| hypothetical protein PF0992 [Pyrococcus furiosus DSM 3638]
gi|18893045|gb|AAL81116.1| hypothetical protein PF0992 [Pyrococcus furiosus DSM 3638]
Length = 309
Score = 36.6 bits (83), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 55/219 (25%), Positives = 99/219 (45%), Gaps = 28/219 (12%)
Query: 109 SEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWI 168
SEY LV+ L + II I +I+IF P L VG + G G+ P + I
Sbjct: 44 SEY-----LVISLFIGIILGI--VIYIFSSS----IP-GLLVGILAGFGGFGYFYPYIRI 91
Query: 169 SNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAE 228
+ +R +++A PDA L + +G+S +AL +A G L+ E T++E
Sbjct: 92 T----RRIEDMEKALPDAFFYLAGSLRAGVSFSEALEELASAKFGA---LTLEFRRTVSE 144
Query: 229 LSFLPNRQVAFENFYNRTQMD-CVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEA 287
+ A F R + + +T +I++ G + D L + ++ R ++
Sbjct: 145 IKRGRPTVEALRAFALRNKRSPVIYRSTMIIIEALERGAPMADVLVAVANDVREIIRIQK 204
Query: 288 EKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
E+KA+ T ++FFL + +GP I++++ +
Sbjct: 205 ERKAS------TGMQMMFFL--VSSGFVGPFIVAVVSNI 235
>gi|197106492|ref|YP_002131869.1| Flp pilus assembly protein [Phenylobacterium zucineum HLK1]
gi|196479912|gb|ACG79440.1| Flp pilus assembly protein [Phenylobacterium zucineum HLK1]
Length = 319
Score = 36.6 bits (83), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 69/147 (46%), Gaps = 7/147 (4%)
Query: 174 KRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLP 233
+R +++ P AL++++ +E+G + A+ V ++ S P+ E + E+++
Sbjct: 139 RRAAALGFQLPQALEIIVRSLEAGHPVPTAIALVGREM---SDPVGTEFGMAADEIAYGA 195
Query: 234 NRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAAS 293
N + A E R Q V + +R G ++ L++ S R M + KAAS
Sbjct: 196 NLEQAIERMAERCQHPDVDLFAATVRLQERTGGNLTGLLKLNASTIRERHKMRLKIKAAS 255
Query: 294 LGPKLTVPMIIF---FLPVLILVIIGP 317
+ + MI+ F+ V +++II P
Sbjct: 256 AEGRASA-MILSAAPFIAVGMIMIISP 281
>gi|85705156|ref|ZP_01036256.1| type II/IV secretion system protein, TadC subfamily protein
[Roseovarius sp. 217]
gi|85670478|gb|EAQ25339.1| type II/IV secretion system protein, TadC subfamily protein
[Roseovarius sp. 217]
Length = 322
Score = 36.6 bits (83), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 59/260 (22%), Positives = 112/260 (43%), Gaps = 24/260 (9%)
Query: 24 IFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQI--TSLQKDSASSRLRTRDSKSLR 81
I++LI+ V+ + L +S+++ + R+ ++ S ++ +LR + L+
Sbjct: 9 IYALIFVGVLVLVEGIYLTVFGRSISLNNRVNRRLEMLDKSGNREEVMEKLRKEMQQHLK 68
Query: 82 NFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKL 141
++L L AIL D+ +AA + L +L+V V+ I L +G
Sbjct: 69 --ARRLPLYAILSDK----AQKAAIAFTPKQLILLMVALSVLAFIGLSVGT--------- 113
Query: 142 LEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISID 201
E +R A + IG G WIS KR + ++ PDA++L++ + G
Sbjct: 114 -ETAAPVRAIASVGIGVGGIF---TWISMKASKRMALLEEQLPDAIELMVRSLRVGHPFS 169
Query: 202 QALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQS 261
A+ VA ++G PL+ E + E ++ + A + R M +R A+
Sbjct: 170 SAIGIVATEVGD---PLATEFGIIADEAAYGRDMGEALKEMAERLDMQDLRFLAVAVTIQ 226
Query: 262 DRYGTSIGDSLRVLVSETRS 281
+ G ++ + L L R+
Sbjct: 227 QQSGGNLAEILAGLAKVIRA 246
>gi|153815435|ref|ZP_01968103.1| hypothetical protein RUMTOR_01670 [Ruminococcus torques ATCC 27756]
gi|145847294|gb|EDK24212.1| hypothetical protein RUMTOR_01670 [Ruminococcus torques ATCC 27756]
Length = 425
Score = 36.6 bits (83), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 46/210 (21%), Positives = 89/210 (42%), Gaps = 29/210 (13%)
Query: 132 IIWIFGYDKLLEYPFQLRVGAVILIGYVGFC-----APSVWISNLVQKRQSSIKRAWPDA 186
+IW +G Q R ++++G +GF + S +K +K +P
Sbjct: 224 VIWAYG--------VQTRAYGILVMG-IGFAVFVIISSSQKEKEEKKKEFREMKLDYPQI 274
Query: 187 LDLLLICVESGISIDQALRRVA----------EDIGGQSVPLS---EEMLLTIAELSFLP 233
++ + ++SG++I +A ++A E I ++ EEM+ + ++S
Sbjct: 275 INKFNLYIKSGMTIRKAWFKIAGEYEKDQKEKEQISAKACGRKKAYEEMVNVMYKISGGA 334
Query: 234 NRQVAFENFYNRTQMDCVRNATQALIQSDRYGT-SIGDSLRVLVSETRSERLMEAEKKAA 292
+ +E + R + R L Q+ R GT + + L + +R A+K
Sbjct: 335 SEGECYEEYGIRCNLSEYRKFGMMLSQNLRKGTRGLTELLEREAEDAFEQRKNLAKKAGE 394
Query: 293 SLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
G KL +P+ + + V +VI+ PA SI
Sbjct: 395 EAGTKLMIPLFLMLIIVFAIVIV-PAFFSI 423
>gi|75674495|ref|YP_316916.1| type II secretion system protein [Nitrobacter winogradskyi Nb-255]
gi|74419365|gb|ABA03564.1| type II secretion system protein [Nitrobacter winogradskyi Nb-255]
Length = 324
Score = 36.6 bits (83), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 33/149 (22%), Positives = 69/149 (46%), Gaps = 4/149 (2%)
Query: 167 WISNLVQKR-QSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLT 225
W+ ++KR +++ RA PDA+D+++ +++G+ + ++L+ VA D PL E
Sbjct: 136 WLLGFLKKRRETAFLRALPDAVDVIVRGIKAGLPLFESLKVVAAD---SPEPLKSEFAAI 192
Query: 226 IAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLM 285
I + A Y R + + + G ++ ++L L R + M
Sbjct: 193 IETQAIGMPLGEACSRLYERMPVPEANFFGIVIAIQQKSGGNLSEALGNLSKVLRDRKKM 252
Query: 286 EAEKKAASLGPKLTVPMIIFFLPVLILVI 314
+ KA S+ K + +I P+++L++
Sbjct: 253 AEKIKAVSMEAKASAAIIGSLPPIVMLLV 281
>gi|186474107|ref|YP_001861449.1| type II secretion system protein [Burkholderia phymatum STM815]
gi|184196439|gb|ACC74403.1| type II secretion system protein [Burkholderia phymatum STM815]
Length = 326
Score = 36.6 bits (83), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 75/161 (46%), Gaps = 9/161 (5%)
Query: 164 PSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEML 223
P V++ + KR ++R PDA DL+ + +G S AL VA+++ PL E
Sbjct: 136 PLVYLRSRRAKRVVQLERLLPDAADLIARALRAGHSFPAALGMVADEL---PQPLGGEFR 192
Query: 224 LTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSER 283
+ E++ + A N +R +D VR A++ G ++ + L + + R
Sbjct: 193 IAFDEINCGVSMNDALMNLVSRVPVDDVRYFVIAVLIQREAGGNLAEILGNIATIIRERL 252
Query: 284 LMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIID 324
+ A+ + S +L+ I+ LP +++ A LS+++
Sbjct: 253 KLLAKVRVLSAEGRLSA-WILGLLPFIVI-----AALSVLN 287
>gi|284029668|ref|YP_003379599.1| type II secretion system protein [Kribbella flavida DSM 17836]
gi|283808961|gb|ADB30800.1| type II secretion system protein [Kribbella flavida DSM 17836]
Length = 312
Score = 36.6 bits (83), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 55/126 (43%), Gaps = 3/126 (2%)
Query: 155 LIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQ 214
L+ +G + +++ V+KR+ + P +LL + V +G AL RVA G+
Sbjct: 143 LLAVLGVLSRDTYLTGQVRKRERRLLAELPTVAELLALSVAAGEGPAAALDRVARSCRGE 202
Query: 215 SVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRV 274
L++E+ +AE + A + +RT + + L + GT + D LR
Sbjct: 203 ---LADELQRVLAETRAGSSLVRALDGLADRTGLVALSRFADGLAVALERGTPLADVLRA 259
Query: 275 LVSETR 280
+ R
Sbjct: 260 QAGDIR 265
>gi|116249985|ref|YP_765823.1| pilus assembly protein [Rhizobium leguminosarum bv. viciae 3841]
gi|115254633|emb|CAK05707.1| putative pilus assembly protein [Rhizobium leguminosarum bv. viciae
3841]
Length = 335
Score = 36.6 bits (83), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 49/190 (25%), Positives = 89/190 (46%), Gaps = 43/190 (22%)
Query: 148 LRVGA--VILIG---YVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQ 202
L VGA +++IG G P + L+++RQ+ +P+ALD++ ++SG+ ++
Sbjct: 124 LVVGASLMVMIGIAVVAGLGLPRWVVGFLIKRRQTKFLNEFPNALDVITRSIKSGLPLND 183
Query: 203 ALRRVAEDIGGQSVPLSEEMLLTI-------------AELS-FLPNRQVAFENFYNRTQM 248
A+R +A + + P+ E L I A ++ +P ++V NF+
Sbjct: 184 AIRLIATE---GTEPVKSEFLRVIEAQQVGLSIPDACARMTIHMPLQEV---NFF----- 232
Query: 249 DCVRNATQALIQSDRYGT---SIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
A IQS G +IG+ +VL R R M+A+ A S+ K + +II
Sbjct: 233 -----AIVIAIQSQAGGNLSEAIGNLSKVL----RERRKMKAKVSALSMEAKASA-VIIG 282
Query: 306 FLPVLILVII 315
LP ++ ++
Sbjct: 283 ALPFIVATLV 292
>gi|308050052|ref|YP_003913618.1| Type II secretion system F domain protein [Ferrimonas balearica DSM
9799]
gi|307632242|gb|ADN76544.1| Type II secretion system F domain protein [Ferrimonas balearica DSM
9799]
Length = 324
Score = 36.6 bits (83), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 29/139 (20%), Positives = 63/139 (45%), Gaps = 9/139 (6%)
Query: 173 QKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFL 232
KR I+ +P+ALD+L +++G + A++ E++ G P++ E + AE+++
Sbjct: 143 NKRMEKIEEQFPEALDILRRGIQAGYAFPDAIKLTYEEMDG---PIAYEFKVMFAEINYG 199
Query: 233 PNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAA 292
+ + A +F R + A+ G ++ ++L L R + + K
Sbjct: 200 KDTRRALLHFIERVPSVSAMAFSTAVQVQKETGGNLAENLENLTRIIRKRFRFQRQVKTF 259
Query: 293 SLGPKLT------VPMIIF 305
S +++ VP+ +F
Sbjct: 260 SAQGRMSAWVLVCVPLALF 278
>gi|187919328|ref|YP_001888359.1| type II secretion system protein [Burkholderia phytofirmans PsJN]
gi|187717766|gb|ACD18989.1| type II secretion system protein [Burkholderia phytofirmans PsJN]
Length = 325
Score = 36.6 bits (83), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 51/111 (45%), Gaps = 4/111 (3%)
Query: 174 KRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLP 233
KR ++R PDA DL+ + +G S AL V E++ PL E L E+++
Sbjct: 145 KRVLQLERQLPDAADLIARALRAGHSFPAALGMVGEELPN---PLGGEFALVFDEINYGV 201
Query: 234 NRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERL 284
+ A N NR ++ +R A++ G ++ + L + R ERL
Sbjct: 202 SMSDALLNMVNRVPVEDLRYFVIAVLIQREAGGNLAEILGSIAGIIR-ERL 251
>gi|256827716|ref|YP_003151675.1| Flp pilus assembly protein TadB [Cryptobacterium curtum DSM 15641]
gi|256583859|gb|ACU94993.1| Flp pilus assembly protein TadB [Cryptobacterium curtum DSM 15641]
Length = 321
Score = 36.6 bits (83), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 32/52 (61%), Gaps = 3/52 (5%)
Query: 169 SNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSE 220
S+ +++R+ +++ A PDA+ + IC+ +G+S Q R+ E+ G PL E
Sbjct: 135 SHAIERREDALREALPDAVWSIGICLHAGLSQQQTFSRLEEESHG---PLKE 183
>gi|119961380|ref|YP_948378.1| type II secretion system protein subunit F [Arthrobacter aurescens
TC1]
gi|119948239|gb|ABM07150.1| putative type II secretion system protein F domain [Arthrobacter
aurescens TC1]
Length = 313
Score = 36.6 bits (83), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 30/140 (21%), Positives = 63/140 (45%), Gaps = 3/140 (2%)
Query: 172 VQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSF 231
+++R+S + +P +L+ + V +G S A+ RV+ G+ LS E +A+
Sbjct: 162 IKRRESRMLSEFPSLAELMALAVAAGESAMGAMDRVSRSSNGE---LSAEFATILADTRS 218
Query: 232 LPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKA 291
A + F +R+++ + L+ + GT + D LR ++ R + + A
Sbjct: 219 GKPLTEALQAFSSRSELPPLVRFIDGLMVAVERGTPLADVLRAQAADVRDAAKRDLMESA 278
Query: 292 ASLGPKLTVPMIIFFLPVLI 311
+ VP++ LP+ +
Sbjct: 279 GRKEIAMMVPLVFGVLPLTV 298
>gi|23465096|ref|NP_695699.1| hypothetical protein BL0506 [Bifidobacterium longum NCC2705]
gi|189440157|ref|YP_001955238.1| Flp pilus assembly protein [Bifidobacterium longum DJO10A]
gi|239622703|ref|ZP_04665734.1| conserved hypothetical protein [Bifidobacterium longum subsp.
infantis CCUG 52486]
gi|23325710|gb|AAN24335.1| hypothetical membrane protein with unknown function
[Bifidobacterium longum NCC2705]
gi|189428592|gb|ACD98740.1| Flp pilus assembly protein [Bifidobacterium longum DJO10A]
gi|239514700|gb|EEQ54567.1| conserved hypothetical protein [Bifidobacterium longum subsp.
infantis CCUG 52486]
Length = 200
Score = 36.6 bits (83), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 62/151 (41%), Gaps = 15/151 (9%)
Query: 187 LDLLLICVESGISIDQALRRVAEDIGG--------------QSVPLSEEMLLTIAELSFL 232
L +L + + G SI +AL V + +GG + VP ++ +A
Sbjct: 50 LRMLQVSLRQGSSIPRALDMVGKAVGGDCGARMSEVGSSLARGVPWADAWHAAMAVQHEG 109
Query: 233 PNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAA 292
+ +RTQ D + AL S +G G L + + + E+ AA
Sbjct: 110 APADSSSGKRTSRTQRD-LGLLQSALESSWTHGDMPGVRLESAIEQLDRDERAAIERNAA 168
Query: 293 SLGPKLTVPMIIFFLPVLILVIIGPAILSII 323
L KL +P + FLP +LV + PAI S +
Sbjct: 169 KLSVKLLMPTGLCFLPAFVLVGVIPAIASFM 199
>gi|332798624|ref|YP_004460123.1| Type II secretion system F domain-containing protein
[Tepidanaerobacter sp. Re1]
gi|332696359|gb|AEE90816.1| Type II secretion system F domain protein [Tepidanaerobacter sp.
Re1]
Length = 309
Score = 36.6 bits (83), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 67/137 (48%), Gaps = 7/137 (5%)
Query: 148 LRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRV 207
+R A++LIG + P +++ + K+Q ++ DAL +L + +G S+ QA+ +
Sbjct: 106 IRSMALVLIGAI---IPPLYLKMSINKKQIQFEKQLGDALQILANGLRAGFSLTQAIESL 162
Query: 208 AEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTS 267
A+D+ PL E EL + + +R + + +R T A++ + G +
Sbjct: 163 AKDMPD---PLGSEFRTASRELLLGMDIETVLSKIADRMKSEDMRLLTAAVVIQLQVGGN 219
Query: 268 IGDSLRVLVSETRSERL 284
+ + L +S+T +RL
Sbjct: 220 LAEILDN-ISQTIRDRL 235
>gi|260776711|ref|ZP_05885606.1| flp pilus assembly protein TadB [Vibrio coralliilyticus ATCC
BAA-450]
gi|260607934|gb|EEX34199.1| flp pilus assembly protein TadB [Vibrio coralliilyticus ATCC
BAA-450]
Length = 322
Score = 36.6 bits (83), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 31/154 (20%), Positives = 70/154 (45%), Gaps = 5/154 (3%)
Query: 167 WISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTI 226
W+S + R S+ + P+ALD++ +++G + QA V E++ P+ E T
Sbjct: 135 WLSKKISDRLSAFEGQLPEALDIMRRMLQAGQPVTQAFSEVGEEM---PAPIGVEFKNTF 191
Query: 227 AELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLME 286
L++ + ++A RT + + A++ G ++ ++L + R+ ++
Sbjct: 192 NLLNYGYDMRMAIMQMAERTPTVSMLAFSSAVLLQKETGGNLSENLEKVSRVLRARFKLQ 251
Query: 287 AEKKAASLGPKLTVPMIIF--FLPVLILVIIGPA 318
+ K S +L+ +++ F+ L L + P
Sbjct: 252 RKIKTLSAESRLSAWILVLSPFVLFLFLSFVNPG 285
>gi|254476377|ref|ZP_05089763.1| type II secretion system protein [Ruegeria sp. R11]
gi|214030620|gb|EEB71455.1| type II secretion system protein [Ruegeria sp. R11]
Length = 322
Score = 36.6 bits (83), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 62/134 (46%), Gaps = 6/134 (4%)
Query: 148 LRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRV 207
LRV A I+IG VG A W++ KR S I+ PDA++L++ + G A++ V
Sbjct: 119 LRVMASIIIG-VG--AVFFWVNKKAAKRMSMIEEQLPDAVELMVRSLRVGHPFASAVQIV 175
Query: 208 AEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTS 267
A ++ PL+ E + E ++ + A + R M +R A+ + G +
Sbjct: 176 ANEV---EDPLATEFGIIADESAYGRDVGEALKEMAERLDMQDMRFLAVAVTIQQQSGGN 232
Query: 268 IGDSLRVLVSETRS 281
+ + L L R+
Sbjct: 233 LAEVLAGLAKVIRA 246
>gi|296133932|ref|YP_003641179.1| Type II secretion system F domain protein [Thermincola sp. JR]
gi|296032510|gb|ADG83278.1| Type II secretion system F domain protein [Thermincola potens JR]
Length = 278
Score = 36.6 bits (83), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 24/116 (20%), Positives = 53/116 (45%), Gaps = 10/116 (8%)
Query: 160 GFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLS 219
GF P + +L+ KR++ ++ + DAL L + G S++ A + D+ V
Sbjct: 77 GFFYPKYKVQDLITKRKAELQLQFKDALYSLTSSLGVGRSLESAFKTALNDL---RVLYP 133
Query: 220 EEMLLTIAELSFLPNR-------QVAFENFYNRTQMDCVRNATQALIQSDRYGTSI 268
+E I E ++ + + A +F R+ ++ ++N + ++ R G ++
Sbjct: 134 DENTYIIKEFGYICRKIELNEPVETALLDFAERSGLEDIKNFAEVMVICKRTGGNL 189
>gi|149178504|ref|ZP_01857092.1| secretion system protein TadB [Planctomyces maris DSM 8797]
gi|148842619|gb|EDL56994.1| secretion system protein TadB [Planctomyces maris DSM 8797]
Length = 310
Score = 36.6 bits (83), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 34/151 (22%), Positives = 70/151 (46%), Gaps = 5/151 (3%)
Query: 173 QKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFL 232
+KR +I+ P+ +DLL +G S++QA+ V E+ G PLS E +L
Sbjct: 129 KKRMQTIQEELPEMIDLLARSTHAGASLEQAIAIVGEETKG---PLSFEFRRCARQLDMN 185
Query: 233 PNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAA 292
+ ++ +R Q+ ++ T L+ + G ++ +L + R + KA+
Sbjct: 186 LSVPAVMKSLSSRIQLIDLKILTSTLMLYRKTGGNLPANLERMADVVRDRINYRRQMKAS 245
Query: 293 SLGPKLTVPMIIFFLPV--LILVIIGPAILS 321
+ + + ++ PV ++L++ PA +S
Sbjct: 246 TGAGRASALLMTVVAPVAFVVLLVAFPAHVS 276
>gi|85373128|ref|YP_457190.1| hypothetical protein ELI_01505 [Erythrobacter litoralis HTCC2594]
gi|84786211|gb|ABC62393.1| hypothetical protein ELI_01505 [Erythrobacter litoralis HTCC2594]
Length = 323
Score = 36.6 bits (83), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 39/70 (55%), Gaps = 4/70 (5%)
Query: 148 LRVGAVIL---IGYV-GFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQA 203
LR GA++L +G V G P + + KR + +PDA++LL+ + SG+ + +
Sbjct: 113 LRSGALLLSLGVGAVIGAGLPHFVVGFFINKRTADFNSKFPDAIELLVRGLRSGLPVTET 172
Query: 204 LRRVAEDIGG 213
L VA+++ G
Sbjct: 173 LAVVAQEVPG 182
>gi|307294431|ref|ZP_07574275.1| Type II secretion system F domain protein [Sphingobium
chlorophenolicum L-1]
gi|306880582|gb|EFN11799.1| Type II secretion system F domain protein [Sphingobium
chlorophenolicum L-1]
Length = 333
Score = 36.2 bits (82), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 37/172 (21%), Positives = 78/172 (45%), Gaps = 7/172 (4%)
Query: 150 VGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAE 209
V A G +G P + ++ L Q+R+ ++ +P ALD + + +G I AL + +
Sbjct: 129 VMAAAFAGALGIMLPMMVLTRLAQRRRKKMEEQFPVALDTFVRGLRAGHPIAAALDLLTK 188
Query: 210 DIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIG 269
++ P+ E + + E+++ + + A + R M+ + +L G ++
Sbjct: 189 EM---RDPIGSEFGIVVDEVTYGADLRDALQRMAERWDMNEMHMFVISLSVQSETGGNLA 245
Query: 270 DSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILV---IIGPA 318
+ L L + R + + +A S ++T M+ LP+L V ++ PA
Sbjct: 246 EILENLSAVIRERASLFMKVRALSSEGRMTAVMLT-ALPILAFVGLFLVNPA 296
>gi|299132290|ref|ZP_07025485.1| Type II secretion system F domain protein [Afipia sp. 1NLS2]
gi|298592427|gb|EFI52627.1| Type II secretion system F domain protein [Afipia sp. 1NLS2]
Length = 323
Score = 36.2 bits (82), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 70/319 (21%), Positives = 126/319 (39%), Gaps = 38/319 (11%)
Query: 14 LAVAITTAVSIFSLIYAVVIPSL-GSGELEKRMKSV----AVEREILRKQQITSLQKDSA 68
LA+A +AV++ L + + P L G + EKR S A R I R Q+ Q +
Sbjct: 6 LAIAFMSAVTLGGLAWVFLYPLLSGERQAEKRRASFSRTEAATRRIDRNQRSRREQVEDT 65
Query: 69 SSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFL 128
+ R ++ KK+ L L + + R ++ + + LV I F+
Sbjct: 66 LKDVEDRAKQA-----KKVPLNTRLAQAGV------SWSRRQFIIGSAALGLLVFFICFV 114
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
+I L G P +S L ++R+ A PDA+D
Sbjct: 115 TANLI-----------------ATAALALSAGLGLPRWVLSYLKRRREKQFLEALPDAVD 157
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
+++ V++G+ + +L+ V D PL E I S A Y R +
Sbjct: 158 VIVRGVKAGLPLFDSLKVVVND---SPEPLRSEFRAIIETQSIGMPLGEACMRLYERMPL 214
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP 308
+ + G ++ ++L L R + M A+ +A S+ K + +I P
Sbjct: 215 PEANFFGIVIGIQTKSGGNLSEALGNLSKVLRDRKKMRAKIQAMSMEAKASAAIIGALPP 274
Query: 309 VLILV--IIGPAILSIIDT 325
V++++ I+ P +S++ T
Sbjct: 275 VVMIIVYIMSPDYISLLWT 293
>gi|149911402|ref|ZP_01900020.1| hypothetical Flp pilus assembly protein TadB [Moritella sp. PE36]
gi|149805510|gb|EDM65515.1| hypothetical Flp pilus assembly protein TadB [Moritella sp. PE36]
Length = 321
Score = 36.2 bits (82), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 41/74 (55%), Gaps = 3/74 (4%)
Query: 172 VQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSF 231
+ KR I++ +P+ALD+L +++G + +++ V E++ G+ LS+E L ++F
Sbjct: 139 INKRMERIEQQFPEALDILKRGLQAGYAFSDSIKLVYEELEGE---LSDEFKLMFNRINF 195
Query: 232 LPNRQVAFENFYNR 245
+ A +F R
Sbjct: 196 GNDVHTALLSFVKR 209
>gi|320101694|ref|YP_004177285.1| type II secretion system F domain-containing protein [Isosphaera
pallida ATCC 43644]
gi|319748976|gb|ADV60736.1| Type II secretion system F domain protein [Isosphaera pallida ATCC
43644]
Length = 331
Score = 36.2 bits (82), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 36/159 (22%), Positives = 71/159 (44%), Gaps = 9/159 (5%)
Query: 114 NILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQ 173
N L++V ++ + ++ GY +L PF + A +L G + +++ + +
Sbjct: 96 NFLVIVAALMALPMVVYLATTTLGYAGIL--PFYVFPIASVLFGVMSIA----FLNYMKK 149
Query: 174 KRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLP 233
KR + A P+AL+L + +G + L+ VA+++ G P++EE E +
Sbjct: 150 KRINDFTAAMPEALELTGRALRAGHGLGSGLKMVADEMTG---PIAEEFGRVFEEQNLGI 206
Query: 234 NRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSL 272
+ A NR VR A++ + G +G+ L
Sbjct: 207 PMEEALRAMANRIPTMDVRFFVTAVVIQRQTGGDLGEVL 245
>gi|255020084|ref|ZP_05292155.1| type II secretion system protein [Acidithiobacillus caldus ATCC
51756]
gi|254970446|gb|EET27937.1| type II secretion system protein [Acidithiobacillus caldus ATCC
51756]
Length = 284
Score = 36.2 bits (82), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 70/151 (46%), Gaps = 4/151 (2%)
Query: 163 APSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEM 222
AP + L ++R + PD L ++ + G ++ Q L +A+D+ S P+++E+
Sbjct: 93 APRYVLLYLKKRRFLRLHDQLPDTLLMMASALRGGANLGQTLEGLAKDM---SPPMNQEL 149
Query: 223 LLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSE 282
L + E + A + R + AL + G ++ D+L+ L R
Sbjct: 150 SLVVREQRLGVPFEEAVSHLAERVRSQDFDLVVSALRINREVGGNLADTLQRLGETVRRR 209
Query: 283 RLMEAEKKAASLGPKLTVPMIIFFLPVLILV 313
+ME + +A + KL +++ LPVLI++
Sbjct: 210 LMMEQKIRALTSQGKLQ-GIVMTALPVLIIL 239
>gi|227823975|ref|YP_002827948.1| putative type II/IV secretion system protein TadB, Flp pilus
assembly protein TadB [Sinorhizobium fredii NGR234]
gi|227342977|gb|ACP27195.1| putative type II/IV secretion system protein TadB, Flp pilus
assembly protein TadB [Sinorhizobium fredii NGR234]
Length = 336
Score = 36.2 bits (82), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 5/71 (7%)
Query: 151 GAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAED 210
G V LI G P + +V++R +P+ALD+++ ++SG+ ++ ALR +A D
Sbjct: 135 GGVALITAAGL--PRWLVGAMVKRRCKKFLDEFPNALDVMVRSIKSGLPLNDALRLIASD 192
Query: 211 IGGQSVPLSEE 221
GQ P+ E
Sbjct: 193 --GQE-PVKTE 200
>gi|84501672|ref|ZP_00999844.1| type II/IV secretion system protein, TadC subfamily protein
[Oceanicola batsensis HTCC2597]
gi|84390293|gb|EAQ02852.1| type II/IV secretion system protein, TadC subfamily protein
[Oceanicola batsensis HTCC2597]
Length = 322
Score = 36.2 bits (82), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 35/171 (20%), Positives = 75/171 (43%), Gaps = 4/171 (2%)
Query: 159 VGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPL 218
+G A W+++ +KR S I+ PDA++L++ + G A++ V+ ++ PL
Sbjct: 127 IGVGAIYFWVNSKAKKRMSLIEEQLPDAVELMVRSLRVGHPFSSAIQIVSREVAD---PL 183
Query: 219 SEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSE 278
E + E ++ + A ++ R + +R A+ + G ++ + L L +
Sbjct: 184 GSEFGIIADENAYGRDMGEALKDLAERIGLQDLRFLAVAVTIQQQSGGNLAEILAGLANV 243
Query: 279 TRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMKDH 329
R+ + KA + + + M + P++ L+ I D + DH
Sbjct: 244 IRARFRLFRRVKAITAEAQWS-GMFLSAFPIVALIAINVMDPHYYDEVMDH 293
>gi|300741823|ref|ZP_07071844.1| putative bacterial type II secretion system protein F domain
protein [Rothia dentocariosa M567]
gi|300381008|gb|EFJ77570.1| putative bacterial type II secretion system protein F domain
protein [Rothia dentocariosa M567]
Length = 284
Score = 36.2 bits (82), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 28/45 (62%)
Query: 160 GFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQAL 204
GF P V +++ + R+ + + WPDA+D L + +G+S+ +AL
Sbjct: 85 GFIMPRVVVNHRAKVREGKLWQLWPDAVDHLRSAIRAGLSLPEAL 129
>gi|116626773|ref|YP_828929.1| type II secretion system protein [Candidatus Solibacter usitatus
Ellin6076]
gi|116229935|gb|ABJ88644.1| type II secretion system protein [Candidatus Solibacter usitatus
Ellin6076]
Length = 325
Score = 36.2 bits (82), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 62/148 (41%), Gaps = 7/148 (4%)
Query: 146 FQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALR 205
F LR+ IL+G+ P +I + +R + PDA+DL + +G +I L
Sbjct: 121 FFLRILFAILVGF----TPVFYILRVRGRRLHKFEEMLPDAIDLFTRTMRAGHNIHSGLE 176
Query: 206 RVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYG 265
+A + S P+ E + EL+ + A R + ++ +LI + G
Sbjct: 177 TIATE---TSDPVKMEFKKLMEELALGSQVEPALHGLGKRVPLIDLKFFITSLILQRQTG 233
Query: 266 TSIGDSLRVLVSETRSERLMEAEKKAAS 293
++ L L + R M A+ KA +
Sbjct: 234 ANMVSVLENLSTLVRERLNMAAKMKAHT 261
>gi|78486065|ref|YP_391990.1| type II secretion system protein [Thiomicrospira crunogena XCL-2]
gi|78364351|gb|ABB42316.1| Flp (type IV) pilus assembly protein, TadC homolog [Thiomicrospira
crunogena XCL-2]
Length = 315
Score = 36.2 bits (82), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 28/127 (22%), Positives = 58/127 (45%), Gaps = 3/127 (2%)
Query: 173 QKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFL 232
++RQ+ +++ +P+ LD ++ ++SG ID AL +AE+ PL +E+ +L+
Sbjct: 134 KQRQNRLRQQFPEMLDAIVRALQSGYGIDGALSMIAEEF---RAPLGKEVKEVNRQLTLG 190
Query: 233 PNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAA 292
+ + +F R ++ + LI G + L L R + +A+ K
Sbjct: 191 ISMRDILRDFQTRIEIPEAQFFVVTLIIQRETGGQLAPILEELSRLMRRREMFQAKLKTL 250
Query: 293 SLGPKLT 299
+ + T
Sbjct: 251 TAESRFT 257
>gi|307726637|ref|YP_003909850.1| type II secretion system F domain-containing protein [Burkholderia
sp. CCGE1003]
gi|307587162|gb|ADN60559.1| Type II secretion system F domain protein [Burkholderia sp.
CCGE1003]
Length = 282
Score = 36.2 bits (82), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 30/133 (22%), Positives = 57/133 (42%), Gaps = 3/133 (2%)
Query: 159 VGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPL 218
V P + + +KR I++ PDAL ++ + +G S AL V + P+
Sbjct: 87 VAMMLPRKYFERMRKKRIEVIEQQLPDALLMMSGALRAGASFPTALEAVVHE---TPPPI 143
Query: 219 SEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSE 278
S+E L + E+ + +A N R + T A+ + G ++ ++L +
Sbjct: 144 SQEFDLLMREIRLGIDLDIAMRNVEKRIPVPDFLMMTAAVTIAREVGGNLAEALESVART 203
Query: 279 TRSERLMEAEKKA 291
R + ME + +A
Sbjct: 204 LREKLTMEGKIRA 216
>gi|330811032|ref|YP_004355494.1| type II secretion system protein; membrane protein [Pseudomonas
brassicacearum subsp. brassicacearum NFM421]
gi|327379140|gb|AEA70490.1| putative type II secretion system protein; putative membrane
protein [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
Length = 328
Score = 36.2 bits (82), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 35/59 (59%), Gaps = 3/59 (5%)
Query: 173 QKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSF 231
KR ++ + PDALD + + +G ++ LR VAE+ G P+++E +T +++++
Sbjct: 147 NKRFAAFEEGLPDALDAMCRALRAGHPFNETLRLVAEEHKG---PVAQEFGMTFSDINY 202
>gi|330969402|gb|EGH69468.1| type II secretion system protein [Pseudomonas syringae pv. aceris
str. M302273PT]
Length = 220
Score = 36.2 bits (82), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 32/138 (23%), Positives = 68/138 (49%), Gaps = 6/138 (4%)
Query: 86 KLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYP 145
++ ++I +D L G+R ++ ++ VP+ +++ I+ + K ++ P
Sbjct: 56 RIGQRSISLDSETQILLNRIGWRRASKRSLFAACQVGVPVGLMVVAILGQMLFFKGVQQP 115
Query: 146 FQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALR 205
+ + +G G+ P ++ + ++RQ + + LL I ESG++++QAL
Sbjct: 116 L---IAPIFALG-AGYLLPKRILATVARRRQKQVVVEISTFIPLLRILFESGMAVEQAL- 170
Query: 206 RVAEDIGGQSVP-LSEEM 222
RV + G +P LSEE+
Sbjct: 171 RVLSNEGKDLLPVLSEEI 188
>gi|311111714|ref|YP_003982936.1| type II secretion system protein [Rothia dentocariosa ATCC 17931]
gi|310943208|gb|ADP39502.1| type II secretion system protein [Rothia dentocariosa ATCC 17931]
Length = 284
Score = 36.2 bits (82), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 28/45 (62%)
Query: 160 GFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQAL 204
GF P V +++ + R+ + + WPDA+D L + +G+S+ +AL
Sbjct: 85 GFIMPRVVVNHRAKVREGKLWQLWPDAVDHLRSAIRAGLSLPEAL 129
>gi|103486614|ref|YP_616175.1| type II secretion system protein [Sphingopyxis alaskensis RB2256]
gi|98976691|gb|ABF52842.1| type II secretion system protein [Sphingopyxis alaskensis RB2256]
Length = 310
Score = 36.2 bits (82), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 42/78 (53%), Gaps = 8/78 (10%)
Query: 144 YPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQA 203
+P VG +I +G P + + ++KR + +PDA+DLL+ + SG+ + +
Sbjct: 105 FPMAALVGLLISLGL-----PYLVVGMAIKKRVAQFNARFPDAIDLLVRGLRSGLPVTET 159
Query: 204 LRRVAEDIGGQSVPLSEE 221
+ V++++ G P+ EE
Sbjct: 160 FQVVSQELPG---PVGEE 174
>gi|254510017|ref|ZP_05122084.1| type II/IV secretion system protein, TadC subfamily
[Rhodobacteraceae bacterium KLH11]
gi|221533728|gb|EEE36716.1| type II/IV secretion system protein, TadC subfamily
[Rhodobacteraceae bacterium KLH11]
Length = 322
Score = 36.2 bits (82), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 29/123 (23%), Positives = 57/123 (46%), Gaps = 3/123 (2%)
Query: 159 VGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPL 218
+G A W++N +KR + I+ PDA++L++ + G +++ VA +I PL
Sbjct: 127 IGIGAVFTWVNNKAKKRMALIEEQLPDAVELMVRSLRVGNPFVSSIQIVANEIED---PL 183
Query: 219 SEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSE 278
+ E + E ++ + A ++ R M +R A+ + G ++ D L L
Sbjct: 184 ATEFGIISDESAYGRDVGEALKDMAERLDMQDLRFLAVAVSIQQQSGGNLADILAGLAKV 243
Query: 279 TRS 281
R+
Sbjct: 244 IRA 246
>gi|229185114|ref|ZP_04312302.1| hypothetical protein bcere0004_26700 [Bacillus cereus BGSC 6E1]
gi|228598371|gb|EEK56003.1| hypothetical protein bcere0004_26700 [Bacillus cereus BGSC 6E1]
Length = 73
Score = 35.8 bits (81), Expect = 8.0, Method: Composition-based stats.
Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 5/60 (8%)
Query: 120 RLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSI 179
R++ P++FL GIIW FG +P L+V +LIG V F P + ++N Q+ +I
Sbjct: 11 RILWPLLFLTPGIIWFFG----PVHPAILQVSIAVLIG-VLFTVPLIVLTNYEQREDGNI 65
>gi|212224828|ref|YP_002308064.1| hypothetical protein TON_1677 [Thermococcus onnurineus NA1]
gi|212009785|gb|ACJ17167.1| conserved hypothetical membrane protein [Thermococcus onnurineus
NA1]
Length = 304
Score = 35.8 bits (81), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 69/154 (44%), Gaps = 12/154 (7%)
Query: 172 VQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSF 231
+ KR +++ PDA L + +GIS +AL + G L+EE T+AE+
Sbjct: 88 ITKRIEEMEKMLPDAFFYLASSLRAGISFSEALEELTTAKFG---ALTEEFKKTVAEIKK 144
Query: 232 LPNRQVAFENFYNRTQMDCV-RNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKK 290
+ A F R + V + +I++ G + D L + ++ R ++ E+K
Sbjct: 145 GRSTVEALRAFAIRNRKSTVIYRSMMIIIEAIERGAPMSDILVFVGNDVREILRIKKERK 204
Query: 291 AASLGPKLTVPMIIFFLPVLILVIIGPAILSIID 324
A+ T ++FF ++ IGP IL I+
Sbjct: 205 AS------TGMQVMFF--IVTSGFIGPLILGIVS 230
>gi|298674469|ref|YP_003726219.1| type II secretion system F domain-containing protein
[Methanohalobium evestigatum Z-7303]
gi|298287457|gb|ADI73423.1| Type II secretion system F domain protein [Methanohalobium
evestigatum Z-7303]
Length = 750
Score = 35.8 bits (81), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 53/117 (45%), Gaps = 5/117 (4%)
Query: 174 KRQSSIKRAWPDALDLLLICVESGISIDQALR-RVAEDIGGQSVPLSEEMLLTIAELSFL 232
KRQ + +PD L L VE+G+++ +++ V D G LS+E ++S+
Sbjct: 530 KRQKKLDGNFPDFLKKLASTVETGMTLQDSIKLMVKTDNEG----LSDETRKIWKDISWG 585
Query: 233 PNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEK 289
A F NR + V + + +++ IG+ L V + SE M+ E+
Sbjct: 586 MELNDALVRFANRLKTQVVSRSMTLITKANESSGDIGEVLMVAARDASSEEEMKRER 642
>gi|256810975|ref|YP_003128344.1| Type II secretion system F domain protein [Methanocaldococcus
fervens AG86]
gi|256794175|gb|ACV24844.1| Type II secretion system F domain protein [Methanocaldococcus
fervens AG86]
Length = 299
Score = 35.8 bits (81), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 65/134 (48%), Gaps = 23/134 (17%)
Query: 152 AVILIG-YVG--FCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVA 208
VIL+ YVG PS+ ++ +++I P AL ++++ +ESG S+++AL V
Sbjct: 57 TVILVALYVGAALSLPSMMYEQKIETLENNI----PQALYIMILSLESGRSLNEALEEVV 112
Query: 209 E-------DIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQS 261
+ DI + + L E ++SF V + +R M R +I++
Sbjct: 113 KSNIKEVSDIFRKVIYLIEH-----QKISFEEAITVVSTLYGSRVLMMLAR----IMIEN 163
Query: 262 DRYGTSIGDSLRVL 275
+YG + DSLR+L
Sbjct: 164 RKYGGDLSDSLRIL 177
>gi|323499917|ref|ZP_08104876.1| Flp pilus assembly protein TadB [Vibrio sinaloensis DSM 21326]
gi|323315158|gb|EGA68210.1| Flp pilus assembly protein TadB [Vibrio sinaloensis DSM 21326]
Length = 322
Score = 35.8 bits (81), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 73/168 (43%), Gaps = 24/168 (14%)
Query: 137 GYD----KLLEYPFQLRVGA---VILIG---YVGFCAP-------SVWISNLVQKRQSSI 179
GYD + L F L + A V+LIG YVG + W++ + R S
Sbjct: 88 GYDWSLSQTLAVTFILSICAFMVVLLIGQPFYVGIASSIGIWAILYFWLNKRISDRLSQF 147
Query: 180 KRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAF 239
+ P+ALD++ +++G + QA V ++ P+ E T L+F + ++A
Sbjct: 148 EEQLPEALDIMRRMLQAGQPVTQAFNEVGNEMPD---PIGTEFKNTFNLLNFGYDMRMAI 204
Query: 240 ENFYNRTQMDCVRNATQALIQSDRYGTSIGDSL----RVLVSETRSER 283
RT + + A++ G ++ ++L RVL S + +R
Sbjct: 205 MQMAERTPTVSMLAFSSAVLLQKETGGNLSENLEKVSRVLRSRFKLQR 252
>gi|167842455|ref|ZP_02469139.1| Flp pilus assembly protein TadB [Burkholderia thailandensis MSMB43]
Length = 325
Score = 35.8 bits (81), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 72/158 (45%), Gaps = 14/158 (8%)
Query: 145 PFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQAL 204
P L V AV + + C P++++ + +R ++R PD D + + +G + A+
Sbjct: 118 PLPLWVAAVASVATI--CLPTLFVLHCRTRRLRKLERQLPDTCDTIARALRAGHAFSSAI 175
Query: 205 RRVAEDIGGQ-SVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQA-LIQSD 262
V GG+ + P+ E +T E+++ Q A N R + +R A LIQ +
Sbjct: 176 SMV----GGEFAEPMGGEFRITFDEINYGVPLQEALLNLATRVPVPDLRYFVIAVLIQRE 231
Query: 263 RYGT--SIGDSLRVLVSET----RSERLMEAEKKAASL 294
G + D + +L+ E R++ AE K ++L
Sbjct: 232 TGGNLAELLDGIALLIRERFKLFDKVRVLSAEGKLSAL 269
>gi|118581109|ref|YP_902359.1| type II secretion system protein [Pelobacter propionicus DSM 2379]
gi|118503819|gb|ABL00302.1| type II secretion system protein [Pelobacter propionicus DSM 2379]
Length = 321
Score = 35.8 bits (81), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 10/72 (13%)
Query: 146 FQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALR 205
F V A +L+G V++SN+ +KR SS PDAL ++ + +G S+ A+
Sbjct: 118 FAAFVAACVLVG------ACVYVSNVRKKRYSSFTEQLPDALTMIARSLRAGHSLTSAVE 171
Query: 206 RVA----EDIGG 213
V E +GG
Sbjct: 172 LVGSETPEPLGG 183
>gi|302669442|ref|YP_003829402.1| Flp pilus assembly protein TadC [Butyrivibrio proteoclasticus B316]
gi|302393915|gb|ADL32820.1| Flp pilus assembly protein TadC [Butyrivibrio proteoclasticus B316]
Length = 486
Score = 35.8 bits (81), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 36/157 (22%), Positives = 71/157 (45%), Gaps = 11/157 (7%)
Query: 153 VILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDI- 211
+++ G F ++ ++KR + + +P + +++ + +G+++ + +++E+
Sbjct: 311 LLIAGAASFVLKDKELAKQIEKRNEGLLKDYPGLVSQMVLYLGAGMTMRNIIGKLSENYV 370
Query: 212 ----GGQSVPLS-EEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGT 266
GQ + EE+L T EL+ + A+E F R + L Q+ R G
Sbjct: 371 AKLKAGQEKSFAYEELLRTTRELAAGKSESDAYEEFGYRCGGQQYTRLSTLLSQNLRKGN 430
Query: 267 SIGDSLRVLVSETR---SERLMEAEKKAASLGPKLTV 300
S + LR+L E R +RL A K G KL +
Sbjct: 431 S--ELLRLLNEEARKSQEDRLDRARKAGEEAGTKLLL 465
>gi|237653360|ref|YP_002889674.1| type II secretion system protein [Thauera sp. MZ1T]
gi|237624607|gb|ACR01297.1| type II secretion system protein [Thauera sp. MZ1T]
Length = 289
Score = 35.8 bits (81), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 33/135 (24%), Positives = 65/135 (48%), Gaps = 3/135 (2%)
Query: 164 PSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEML 223
P + L Q+R I++ PDAL ++ + +G+S+ AL+++ + G+ P+++E
Sbjct: 99 PRLAFGLLRQRRLDLIEQQLPDALQVIAGGLRAGVSMTVALQQLVRE--GRP-PIAQEFD 155
Query: 224 LTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSER 283
LT+ E A ++ R +M + A+ ++ G S+ ++L RS+
Sbjct: 156 LTLREHRLGIPLDEALDHLAARVRMPSLTLVIAAMRIANETGGSLAEALERAALTVRSQL 215
Query: 284 LMEAEKKAASLGPKL 298
ME + A + KL
Sbjct: 216 AMEGKIGALTAQGKL 230
>gi|209551763|ref|YP_002283680.1| type II secretion system protein [Rhizobium leguminosarum bv.
trifolii WSM2304]
gi|209537519|gb|ACI57454.1| type II secretion system protein [Rhizobium leguminosarum bv.
trifolii WSM2304]
Length = 335
Score = 35.8 bits (81), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 44/190 (23%), Positives = 90/190 (47%), Gaps = 31/190 (16%)
Query: 141 LLEYPFQLRVGAVILIG---YVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESG 197
LL F + V +++IG G P + L+++RQ+ P+ALD++ ++SG
Sbjct: 119 LLLMAFLIGVSLMVIIGIAVVAGLGLPRWIVGFLIKRRQNKFLNELPNALDVITRSIKSG 178
Query: 198 ISIDQALRRVAEDIGGQSVPL-------SEEMLLTIAE-----LSFLPNRQVAFENFYNR 245
+ ++ A+R +A + G + V ++++ L+I + + +P ++V+F
Sbjct: 179 LPLNDAIRLIATE-GTEPVKSEFRRVIEAQQVGLSIPDACARMTAHMPLQEVSFFAIVIA 237
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
Q N ++A IG+ +V+ R R M+A+ A S+ K + +II
Sbjct: 238 IQSQAGGNLSEA----------IGNLSKVI----RERRKMKAKVSALSMEAKASA-VIIG 282
Query: 306 FLPVLILVII 315
LP ++ ++
Sbjct: 283 ALPFIVATLV 292
>gi|149200851|ref|ZP_01877826.1| type II secretion system protein [Roseovarius sp. TM1035]
gi|149145184|gb|EDM33210.1| type II secretion system protein [Roseovarius sp. TM1035]
Length = 322
Score = 35.8 bits (81), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 28/123 (22%), Positives = 53/123 (43%), Gaps = 3/123 (2%)
Query: 159 VGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPL 218
+G WIS KR + ++ PDA++L++ + G A+ VA ++G PL
Sbjct: 127 IGVGGIFTWISMKASKRMALLEEQLPDAIELMVRSLRVGHPFSSAIGIVATEVGD---PL 183
Query: 219 SEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSE 278
+ E + E ++ + A + R M +R A+ + G ++ + L L
Sbjct: 184 ATEFGIIADEAAYGRDMGEALKEMAERLDMQDLRFLAVAVTIQQQSGGNLAEILAGLAQV 243
Query: 279 TRS 281
R+
Sbjct: 244 IRA 246
>gi|284028546|ref|YP_003378477.1| type II secretion system protein [Kribbella flavida DSM 17836]
gi|283807839|gb|ADB29678.1| type II secretion system protein [Kribbella flavida DSM 17836]
Length = 189
Score = 35.8 bits (81), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 63/148 (42%), Gaps = 6/148 (4%)
Query: 172 VQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSF 231
V+KR + I P A+DLL C+ +G A+ V + G PL+ + L
Sbjct: 35 VRKRNARISADLPLAVDLLAACLRAGRPPQAAIATVGHALDG---PLAGLLAEVERRLDL 91
Query: 232 LPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKA 291
+ A+ ATQ ++ R G + +L ++ R R AE++
Sbjct: 92 GADAIDAWSVLRAEPTCATFARATQ---RALRSGAPLAKTLESQSADLRQSRRWTAEQQT 148
Query: 292 ASLGPKLTVPMIIFFLPVLILVIIGPAI 319
++ + +P+ + FLP +L+ + P I
Sbjct: 149 RAVETRSVLPLGLCFLPAFVLLGVVPTI 176
>gi|170724974|ref|YP_001759000.1| type II secretion system protein [Shewanella woodyi ATCC 51908]
gi|169810321|gb|ACA84905.1| type II secretion system protein [Shewanella woodyi ATCC 51908]
Length = 302
Score = 35.8 bits (81), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 167 WISN-LVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQ 214
W N L++KR+++ +PDAL++++ V SG SI QA+ V + + Q
Sbjct: 114 WGWNYLMRKRKNAFDETFPDALNIMMSAVSSGESIMQAIAYVGQSLDNQ 162
Searching..................................................done
Results from round 2
>gi|254780721|ref|YP_003065134.1| pilus component protein [Candidatus Liberibacter asiaticus str.
psy62]
gi|254040398|gb|ACT57194.1| pilus component protein [Candidatus Liberibacter asiaticus str.
psy62]
Length = 329
Score = 383 bits (985), Expect = e-104, Method: Composition-based stats.
Identities = 329/329 (100%), Positives = 329/329 (100%)
Query: 1 MPHYFFDLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQI 60
MPHYFFDLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQI
Sbjct: 1 MPHYFFDLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQI 60
Query: 61 TSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVR 120
TSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVR
Sbjct: 61 TSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVR 120
Query: 121 LVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIK 180
LVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIK
Sbjct: 121 LVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIK 180
Query: 181 RAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFE 240
RAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFE
Sbjct: 181 RAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFE 240
Query: 241 NFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV 300
NFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV
Sbjct: 241 NFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV 300
Query: 301 PMIIFFLPVLILVIIGPAILSIIDTMKDH 329
PMIIFFLPVLILVIIGPAILSIIDTMKDH
Sbjct: 301 PMIIFFLPVLILVIIGPAILSIIDTMKDH 329
>gi|315121886|ref|YP_004062375.1| pilus component protein [Candidatus Liberibacter solanacearum
CLso-ZC1]
gi|313495288|gb|ADR51887.1| pilus component protein [Candidatus Liberibacter solanacearum
CLso-ZC1]
Length = 319
Score = 319 bits (817), Expect = 4e-85, Method: Composition-based stats.
Identities = 242/321 (75%), Positives = 284/321 (88%), Gaps = 2/321 (0%)
Query: 8 LFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDS 67
+FD+ +AV + T++S+FSLIYAV+IPSLGS ELEKR+KSV++ERE LRKQQ+ L K
Sbjct: 1 MFDSVTIAVVVATSISVFSLIYAVIIPSLGSDELEKRIKSVSIEREELRKQQLARLGK-- 58
Query: 68 ASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIF 127
SS LRT D+ SLR FV+K NLKAILVD+ +V+KLRAAGFRSEY+LNILL++RLV+PII
Sbjct: 59 PSSGLRTHDNMSLRKFVEKFNLKAILVDKPMVDKLRAAGFRSEYALNILLIIRLVLPIIT 118
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
L++GIIWIFG+DKL +Y F R+ VILIGY GF APS++ISNLV KRQ SI+RAWPDAL
Sbjct: 119 LVIGIIWIFGFDKLEQYSFFNRLFVVILIGYAGFYAPSMFISNLVTKRQDSIRRAWPDAL 178
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQ 247
DLLLIC+ESGI++DQALRRVAE++GGQSV LSEE+LLT AELSFL NRQVAFENFYNRTQ
Sbjct: 179 DLLLICIESGIAVDQALRRVAEEVGGQSVALSEELLLTTAELSFLLNRQVAFENFYNRTQ 238
Query: 248 MDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFL 307
MDC+RN QA IQSDRYGTSIGDSLRVLV+ETRSERLMEAEKKAA+L PKLTVPMI+FFL
Sbjct: 239 MDCIRNVMQAFIQSDRYGTSIGDSLRVLVAETRSERLMEAEKKAAALSPKLTVPMILFFL 298
Query: 308 PVLILVIIGPAILSIIDTMKD 328
PVL+LVIIGPAIL+I+DTMK
Sbjct: 299 PVLMLVIIGPAILNIMDTMKG 319
>gi|328545274|ref|YP_004305383.1| hypothetical protein SL003B_3658 [polymorphum gilvum SL003B-26A1]
gi|326415016|gb|ADZ72079.1| Hypothetical transmembrane protein [Polymorphum gilvum SL003B-26A1]
Length = 325
Score = 317 bits (812), Expect = 2e-84, Method: Composition-based stats.
Identities = 153/324 (47%), Positives = 220/324 (67%), Gaps = 3/324 (0%)
Query: 6 FDLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQK 65
F +++ +A+ T V++ ++ +V+P L+ RMK+VA+ERE +R ++ L
Sbjct: 3 FSDLANSQMVIAVLTMVAVAGTVFTLVMPVFERDGLKSRMKTVALEREKIRARERARLAT 62
Query: 66 DSASSR--LRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVV 123
+ +R LR + K ++N V KLNL+ L DEN +KLR AG+R L L R+V+
Sbjct: 63 EKGDTRVSLRNQPKKQVKNLVDKLNLRTALADENTQDKLRMAGYRGTGPLYTFLFARIVM 122
Query: 124 PIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAW 183
P+I ++ + ++F + P +V A + +G +G AP+V+I N + KRQ SI+RAW
Sbjct: 123 PLILFVIALFYVFAF-LPATLPSFTKVCAALFVGGIGVFAPNVYIQNRITKRQQSIRRAW 181
Query: 184 PDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFY 243
PDALDL+LICVESG+SI+ A R+VA++IG QS+PL+EE+ LT AELSFL R+ A+ NF
Sbjct: 182 PDALDLMLICVESGMSIEAAFRKVADEIGIQSIPLAEELTLTNAELSFLQERRQAYLNFA 241
Query: 244 NRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMI 303
RT +D V+N T ALIQ++RYGT IG +LRV+ + R +R+ EAEKKAASL PKLTVPMI
Sbjct: 242 KRTGVDGVKNVTMALIQAERYGTPIGHALRVMADDNREQRMQEAEKKAASLPPKLTVPMI 301
Query: 304 IFFLPVLILVIIGPAILSIIDTMK 327
+FFLPVL VI+GPA++ II T +
Sbjct: 302 VFFLPVLFFVIMGPAVMQIIATFR 325
>gi|222084474|ref|YP_002543003.1| pilus assembly protein [Agrobacterium radiobacter K84]
gi|221721922|gb|ACM25078.1| pilus assembly protein [Agrobacterium radiobacter K84]
Length = 325
Score = 311 bits (796), Expect = 1e-82, Method: Composition-based stats.
Identities = 160/318 (50%), Positives = 229/318 (72%)
Query: 9 FDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSA 68
+ +A+ A+++F+ Y + +P L G+L KRMK+V+ ERE +R ++ L D +
Sbjct: 8 LTDPGMILAVFVAIAVFATFYTIAVPFLERGDLNKRMKAVSTEREQIRARERARLNTDGS 67
Query: 69 SSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFL 128
+ LR++++K++R V++ NL+ LVD N VN+LRAAG RSE +LN+ LV R ++P +FL
Sbjct: 68 KASLRSQNNKNVRQIVERFNLRNALVDTNTVNRLRAAGLRSENALNMFLVARFLLPFLFL 127
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
+ + +FG PF R+ VI Y+GF +P+++ISN V KRQ SIKRAWPDALD
Sbjct: 128 AVAVFLVFGLGYFAAKPFAFRLLGVIGTAYLGFYSPNIYISNRVTKRQKSIKRAWPDALD 187
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
L+LICVESGISI+ +RRV+E++ QS L+EEM+LT AELSFL +R+ AF+N RTQ+
Sbjct: 188 LMLICVESGISIEAGMRRVSEEMAEQSPALAEEMVLTTAELSFLQDRRTAFDNLAARTQI 247
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP 308
+ V++ TQALIQ++RYGT + +LRV+ E R ER+ EAEKKAA+L PKLTVPMI+FFLP
Sbjct: 248 EIVKSVTQALIQAERYGTPVSQALRVMAQEGRDERMNEAEKKAAALPPKLTVPMIVFFLP 307
Query: 309 VLILVIIGPAILSIIDTM 326
VL+ VI+GPAI+ ++D
Sbjct: 308 VLMAVILGPAIIQVMDKF 325
>gi|15887568|ref|NP_353249.1| components of type IV pilus [Agrobacterium tumefaciens str. C58]
gi|15155105|gb|AAK86034.1| components of type IV pilus [Agrobacterium tumefaciens str. C58]
Length = 328
Score = 308 bits (790), Expect = 6e-82, Method: Composition-based stats.
Identities = 166/328 (50%), Positives = 231/328 (70%), Gaps = 2/328 (0%)
Query: 1 MPHYFFDLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQI 60
M F + +AI +++F+ +Y +++P L +L KRMK+V+ ERE++R ++
Sbjct: 1 MTGDLFSRLTDPQTIIAILVTLAVFATLYTLIMPFLERKDLAKRMKAVSSERELIRSRER 60
Query: 61 TSLQK--DSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLV 118
L + LR ++KS R V+K NL+ L D+N +NKLRAAGFRS+ +LN L
Sbjct: 61 ERLATVTRDGRTSLRGNNNKSARRIVEKFNLREALADQNTMNKLRAAGFRSQNALNTFLA 120
Query: 119 VRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSS 178
R V+P IFL + W+F L + F +R+ AV++ GY+GF AP++++SN + KRQ+S
Sbjct: 121 ARFVLPFIFLAVAFTWVFVLGNLADKAFVVRLMAVLVFGYIGFYAPNIYVSNRMTKRQAS 180
Query: 179 IKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVA 238
IKRAWPDALDL+LIC+ESG+S++ A+RRVAE++G QS L+EEM+LT AELSFL +R+ A
Sbjct: 181 IKRAWPDALDLMLICIESGVSMESAMRRVAEEMGEQSPELAEEMILTTAELSFLQDRRTA 240
Query: 239 FENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKL 298
ENF RTQ+D V++ QALIQ++RYGT + +LRVL E R ER+ EAEKKAA+L PKL
Sbjct: 241 LENFGMRTQLDGVKSVVQALIQAERYGTPLAQALRVLAQEGRDERMNEAEKKAAALPPKL 300
Query: 299 TVPMIIFFLPVLILVIIGPAILSIIDTM 326
TVPMIIFFLPVLI VI+GPA + + DT
Sbjct: 301 TVPMIIFFLPVLIAVILGPAGIRVADTF 328
>gi|209551764|ref|YP_002283681.1| type II secretion system protein [Rhizobium leguminosarum bv.
trifolii WSM2304]
gi|209537520|gb|ACI57455.1| type II secretion system protein [Rhizobium leguminosarum bv.
trifolii WSM2304]
Length = 328
Score = 307 bits (788), Expect = 1e-81, Method: Composition-based stats.
Identities = 175/328 (53%), Positives = 236/328 (71%), Gaps = 2/328 (0%)
Query: 1 MPHYFFDLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQI 60
M + +A+ A+++F+ Y + +P G+L KRMK+V+ ERE +R ++
Sbjct: 1 MSQDLAATLTNPSMLIALLVAIAVFATFYTIAVPFFERGDLNKRMKAVSTEREQIRARER 60
Query: 61 TSLQKD--SASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLV 118
+ + + + LR+++++S+R V++ NL+ LVDEN VNKLRAAGFRSE +LN LV
Sbjct: 61 ARMNTETGAGKASLRSQNNRSVRQIVERFNLRKALVDENTVNKLRAAGFRSENALNTFLV 120
Query: 119 VRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSS 178
R ++P +FL L W+FG L E +R+ AVI IGYVGF AP+++ISN + KRQ S
Sbjct: 121 ARFLLPFLFLALAAFWVFGLGNLPERGMPIRLFAVIGIGYVGFYAPNIYISNRMGKRQHS 180
Query: 179 IKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVA 238
IKRAWPDALDL+LICVESGISI+ A+RRV+E++G QS PL+EEM+LT AELSFLP+R+VA
Sbjct: 181 IKRAWPDALDLMLICVESGISIEAAMRRVSEELGEQSPPLAEEMVLTTAELSFLPDRRVA 240
Query: 239 FENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKL 298
EN RTQ++ VR+ TQALIQ+DRYGT + +LRVL E R ER+ EAEKKAA+L PKL
Sbjct: 241 LENLATRTQIELVRSVTQALIQADRYGTPVAQALRVLAQEGRDERMNEAEKKAAALPPKL 300
Query: 299 TVPMIIFFLPVLILVIIGPAILSIIDTM 326
TVPMI+FFLPVLI VI+GPA + + D
Sbjct: 301 TVPMILFFLPVLIAVILGPAGIQVSDKF 328
>gi|150398546|ref|YP_001329013.1| type II secretion system protein [Sinorhizobium medicae WSM419]
gi|150030061|gb|ABR62178.1| type II secretion system protein [Sinorhizobium medicae WSM419]
Length = 327
Score = 306 bits (785), Expect = 3e-81, Method: Composition-based stats.
Identities = 159/324 (49%), Positives = 228/324 (70%), Gaps = 2/324 (0%)
Query: 5 FFDLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQ 64
+ + + VA+ ++++ + Y++V P L G+L KRMKSVA ERE +R ++ L
Sbjct: 4 WIETLTDPNIIVAVLVSMAVLATFYSLVAPLLERGDLAKRMKSVATEREQIRARERARLN 63
Query: 65 KDSASSR--LRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLV 122
++ + R LRT+ + S+R V++LNL+ LVD+N VN+L+ AGFRS+ +LN L R
Sbjct: 64 TEAPTGRASLRTQHNSSVREVVERLNLRKALVDDNTVNRLKTAGFRSQNALNTFLFARFC 123
Query: 123 VPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRA 182
+P +FL + +++IF + P +RV I YVGF AP+++I+N + KRQ SI+RA
Sbjct: 124 LPFLFLTVSVLYIFVLGNFADKPVMVRVSFAIGFAYVGFYAPNIFIANAISKRQHSIRRA 183
Query: 183 WPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENF 242
WPDALDLLLICVESG+S++ A+RRVA++I QS PL+EE++LT AELSFLP R+VA EN
Sbjct: 184 WPDALDLLLICVESGVSMELAMRRVADEIAVQSQPLAEELVLTTAELSFLPERRVALENL 243
Query: 243 YNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPM 302
RT ++ V++ QALIQ+DRYGT + +LRVL E+R +R+ AEKKAA+L PKLTVPM
Sbjct: 244 GRRTGLEEVKSVMQALIQADRYGTPVAQALRVLAQESRDQRMTAAEKKAAALPPKLTVPM 303
Query: 303 IIFFLPVLILVIIGPAILSIIDTM 326
I+FFLPVL+ VI+GPA + + D
Sbjct: 304 ILFFLPVLVAVILGPAGIQVADKF 327
>gi|241207162|ref|YP_002978258.1| type II secretion system protein [Rhizobium leguminosarum bv.
trifolii WSM1325]
gi|240861052|gb|ACS58719.1| type II secretion system protein [Rhizobium leguminosarum bv.
trifolii WSM1325]
Length = 328
Score = 306 bits (785), Expect = 3e-81, Method: Composition-based stats.
Identities = 172/328 (52%), Positives = 234/328 (71%), Gaps = 2/328 (0%)
Query: 1 MPHYFFDLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQI 60
M + +A+ A+++F+ Y + IP G+L KRMK+V+ ERE +R ++
Sbjct: 1 MSQDLAATLTNPSMLIALFVAIAVFATFYTIAIPFFERGDLNKRMKAVSTEREQIRARER 60
Query: 61 TSLQKD--SASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLV 118
+ + + + LR ++++S+R V++ NL+ LVDEN VNKLRAAGFRSE +LN LV
Sbjct: 61 ARMNTETGAGKASLRNQNNRSVRQIVERFNLRKALVDENTVNKLRAAGFRSENALNTFLV 120
Query: 119 VRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSS 178
R ++P +FL L +W+FG L E +R+ AVI +GY+GF AP+++ISN + KRQ S
Sbjct: 121 ARFLLPFLFLTLAAVWVFGLGNLAEKGTPIRLFAVIGVGYLGFYAPNIFISNRMGKRQHS 180
Query: 179 IKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVA 238
IKRAWPDALDL+LICVESGISI+ A+RRV+E++G QS L+EEM+LT AELSFLP+R+ A
Sbjct: 181 IKRAWPDALDLMLICVESGISIEAAMRRVSEELGEQSPALAEEMVLTTAELSFLPDRRAA 240
Query: 239 FENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKL 298
EN RTQ++ VR+ TQALIQ+DRYGT + +LRVL E R ER+ EAEKKAA+L PKL
Sbjct: 241 LENLATRTQIELVRSVTQALIQADRYGTPVAQALRVLAQEGRDERMNEAEKKAAALPPKL 300
Query: 299 TVPMIIFFLPVLILVIIGPAILSIIDTM 326
TVPMI+FFLPVLI VI+GPA + + D
Sbjct: 301 TVPMILFFLPVLIAVILGPAGIQVADKF 328
>gi|190889886|ref|YP_001976428.1| pilus component protein [Rhizobium etli CIAT 652]
gi|190695165|gb|ACE89250.1| pilus component protein [Rhizobium etli CIAT 652]
Length = 328
Score = 306 bits (784), Expect = 3e-81, Method: Composition-based stats.
Identities = 176/328 (53%), Positives = 236/328 (71%), Gaps = 2/328 (0%)
Query: 1 MPHYFFDLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQI 60
M + +A+ A+++F+ Y + IP G+L KRMK+V+ ERE +R ++
Sbjct: 1 MSQDLAATLTNPGMLIAVFVAIAVFATFYTIAIPFFERGDLTKRMKAVSTEREQIRARER 60
Query: 61 TSLQKD--SASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLV 118
+ + + + LR+++++S+R V++ NL+ LVDEN VNKLRAAGFRSE +LN LV
Sbjct: 61 ARMNANPGAGKASLRSQNNRSVRQIVERFNLRQALVDENTVNKLRAAGFRSENALNTFLV 120
Query: 119 VRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSS 178
R ++P +FL L W+FG L E +R+ AVI IGYVGF AP+++ISN + KRQ S
Sbjct: 121 ARFLLPFLFLALAAFWVFGLGNLAERGMPIRLFAVIGIGYVGFYAPNIYISNRMGKRQHS 180
Query: 179 IKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVA 238
IKRAWPDALDL+LICVESGISI+ A+RRV+E++G QS PL+EEM+LT AELSFLP+R+VA
Sbjct: 181 IKRAWPDALDLMLICVESGISIEAAMRRVSEELGEQSPPLAEEMVLTTAELSFLPDRRVA 240
Query: 239 FENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKL 298
EN RTQ++ VR+ TQALIQ+DRYGT + +LRVL E R ER+ EAEKKAA+L PKL
Sbjct: 241 LENLATRTQIELVRSVTQALIQADRYGTPVAQALRVLAQEGRDERMNEAEKKAAALPPKL 300
Query: 299 TVPMIIFFLPVLILVIIGPAILSIIDTM 326
TVPMI+FFLPVLI VI+GPA + + D
Sbjct: 301 TVPMILFFLPVLIAVILGPAGIQVADKF 328
>gi|327194689|gb|EGE61535.1| pilus component protein [Rhizobium etli CNPAF512]
Length = 328
Score = 305 bits (781), Expect = 6e-81, Method: Composition-based stats.
Identities = 177/328 (53%), Positives = 236/328 (71%), Gaps = 2/328 (0%)
Query: 1 MPHYFFDLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQI 60
M + +A+ A+++F+ Y + IP G+L KRMK+V+ ERE +R ++
Sbjct: 1 MSQDLAATLTNPGMLIAVFVAIAVFATFYTIAIPFFERGDLTKRMKAVSTEREQIRARER 60
Query: 61 TSLQKD--SASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLV 118
+ D + + LR+++++S+R V++ NL+ LVDEN VNKLRAAGFRSE +LN LV
Sbjct: 61 ARMNADPGAGKASLRSQNNRSVRQIVERFNLRQALVDENTVNKLRAAGFRSENALNTFLV 120
Query: 119 VRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSS 178
R ++P +FL L W+FG L E +R+ AVI IGYVGF AP+++ISN + KRQ S
Sbjct: 121 ARFLLPFLFLALAAFWVFGLGNLAERGMPIRLFAVIGIGYVGFYAPNIYISNRMGKRQHS 180
Query: 179 IKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVA 238
IKRAWPDALDL+LICVESGISI+ A+RRV+E++G QS PL+EEM+LT AELSFLP+R+VA
Sbjct: 181 IKRAWPDALDLMLICVESGISIEAAMRRVSEELGEQSPPLAEEMVLTTAELSFLPDRRVA 240
Query: 239 FENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKL 298
EN RTQ++ VR+ TQALIQ+DRYGT + +LRVL E R ER+ EAEKKAA+L PKL
Sbjct: 241 LENLAMRTQIELVRSVTQALIQADRYGTPVAQALRVLAQEGRDERMNEAEKKAAALPPKL 300
Query: 299 TVPMIIFFLPVLILVIIGPAILSIIDTM 326
TVPMI+FFLPVLI VI+GPA + + D
Sbjct: 301 TVPMILFFLPVLIAVILGPAGIQVADKF 328
>gi|13474665|ref|NP_106234.1| hypothetical protein mlr5604 [Mesorhizobium loti MAFF303099]
gi|14025420|dbj|BAB52020.1| mlr5604 [Mesorhizobium loti MAFF303099]
Length = 339
Score = 304 bits (780), Expect = 1e-80, Method: Composition-based stats.
Identities = 148/326 (45%), Positives = 220/326 (67%), Gaps = 3/326 (0%)
Query: 1 MPHYFFDLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQI 60
M L +A+ A+++F+ ++ + +P+ G +L+ RMKSVA+ER+ LR +Q
Sbjct: 1 MTEQVIKSLTDPSLLIALLVAIAVFATVFTL-LPAFGGNQLKARMKSVALERDELRAKQR 59
Query: 61 TSL--QKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLV 118
L + D LR + S +RN V +L+L+ L DE+ + KL+ AGFR + L L
Sbjct: 60 ARLASEADRRRKGLREQQSVGMRNIVDRLDLRRALADESTLQKLKVAGFRGQNPLTRFLF 119
Query: 119 VRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSS 178
RLV+P + LG+++IF L + P +R+ IL+ Y GF AP V+++N KR+ S
Sbjct: 120 FRLVLPFVGFALGLVYIFVLGGLPDKPLVIRLFVCILVAYGGFYAPVVYVNNRATKRKQS 179
Query: 179 IKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVA 238
I+ AWPDALDL+LICVESG+S++ ALR+VA++IG QSV L+EE +LT AELS+L R+ A
Sbjct: 180 IQMAWPDALDLMLICVESGMSVEAALRKVADEIGAQSVALAEEFILTNAELSYLQERKQA 239
Query: 239 FENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKL 298
+EN NRT ++ V++ +QAL+Q++RYGT + +LRVL +E+R +R+ AEKKAA+L PKL
Sbjct: 240 YENLANRTGLESVKSVSQALVQAERYGTPVAHALRVLAAESRDQRMNAAEKKAAALPPKL 299
Query: 299 TVPMIIFFLPVLILVIIGPAILSIID 324
TVPMI+FFLPVL +I+GPA + +
Sbjct: 300 TVPMILFFLPVLFAIILGPAGIQVSQ 325
>gi|239833232|ref|ZP_04681561.1| type II secretion system protein [Ochrobactrum intermedium LMG
3301]
gi|239825499|gb|EEQ97067.1| type II secretion system protein [Ochrobactrum intermedium LMG
3301]
Length = 333
Score = 304 bits (779), Expect = 1e-80, Method: Composition-based stats.
Identities = 155/323 (47%), Positives = 213/323 (65%), Gaps = 1/323 (0%)
Query: 1 MPHYFFDLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQI 60
M + + V++F+ + +++P L L+ RMKSVA ERE +R ++
Sbjct: 1 MFSLLTQKLSDPQFLIGALIMVAVFATVVTILLPVLSGSALKSRMKSVATEREAIRSRER 60
Query: 61 TSLQKDS-ASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVV 119
L +S LR + +R FV+KL+LK L DE V LR AGFR + LNI L +
Sbjct: 61 ARLAAESDRRGSLRHQQKPGIREFVEKLDLKRALADEKTVASLRQAGFRGQNPLNIFLFL 120
Query: 120 RLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSI 179
R V+P + + I+IF L + F +R+ I GY GF AP++++SN KR+ SI
Sbjct: 121 RFVLPFGAMAIAAIYIFVLGVLADQTFFVRLLVCIFAGYAGFYAPNLYVSNRATKRKQSI 180
Query: 180 KRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAF 239
+RAWPDALDL+LICVESG+S + A RRVA++IG QSV L+EE++LT AELSFLP R+ A+
Sbjct: 181 RRAWPDALDLMLICVESGMSTEAAFRRVADEIGIQSVELAEELMLTNAELSFLPERRQAY 240
Query: 240 ENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLT 299
EN NRT ++ V++ TQALIQ++RYGT + +LR L E+R RL+EAEKKAA+L PKLT
Sbjct: 241 ENLANRTGLEPVKSVTQALIQAERYGTPVAQALRTLSQESRDLRLLEAEKKAAALPPKLT 300
Query: 300 VPMIIFFLPVLILVIIGPAILSI 322
VPMI+FFLPVL +VI+GPA + I
Sbjct: 301 VPMIVFFLPVLFIVILGPAFIQI 323
>gi|116249986|ref|YP_765824.1| component of pilus protein [Rhizobium leguminosarum bv. viciae
3841]
gi|115254634|emb|CAK05708.1| putative component of pilus protein [Rhizobium leguminosarum bv.
viciae 3841]
Length = 328
Score = 304 bits (778), Expect = 2e-80, Method: Composition-based stats.
Identities = 171/328 (52%), Positives = 235/328 (71%), Gaps = 2/328 (0%)
Query: 1 MPHYFFDLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQI 60
M + +A+ A+++F+ Y + +P G+L KRMK+V+ ERE +R ++
Sbjct: 1 MSQDLAATLTNPSMLIALLVAIAVFATFYTIAVPFFERGDLNKRMKAVSTEREQIRARER 60
Query: 61 TSLQKD--SASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLV 118
+ + + + LR+++++S+R V++ NL+ LVDEN +NKLRAAGFRSE +LN LV
Sbjct: 61 ARMNTETGAGKASLRSQNNRSVRQIVERFNLRKALVDENTINKLRAAGFRSENALNTFLV 120
Query: 119 VRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSS 178
R ++P +FL L W+FG L E +R+ AVI +GY+GF AP+++ISN + KRQ S
Sbjct: 121 ARFLLPFLFLALAAFWVFGLGNLAEKGTPIRLFAVIGVGYLGFYAPNIYISNRMGKRQHS 180
Query: 179 IKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVA 238
IKRAWPDALDL+LICVESGISI+ A+RRV+E++G QS L+EEM+LT AELSFLP+R+VA
Sbjct: 181 IKRAWPDALDLMLICVESGISIEAAMRRVSEELGEQSPALAEEMVLTTAELSFLPDRRVA 240
Query: 239 FENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKL 298
EN RTQ++ VR+ TQALIQ+DRYGT + +LRVL E R ER+ EAEKKAA+L PKL
Sbjct: 241 LENLATRTQIELVRSVTQALIQADRYGTPVAQALRVLAQEGRDERMNEAEKKAAALPPKL 300
Query: 299 TVPMIIFFLPVLILVIIGPAILSIIDTM 326
TVPMI+FFLPVLI VI+GPA + + D
Sbjct: 301 TVPMILFFLPVLIAVILGPAGIQVADKF 328
>gi|15963899|ref|NP_384252.1| hypothetical protein SMc02822 [Sinorhizobium meliloti 1021]
gi|307320431|ref|ZP_07599848.1| Type II secretion system F domain protein [Sinorhizobium meliloti
AK83]
gi|15073074|emb|CAC41533.1| Hypothetical transmembrane protein [Sinorhizobium meliloti 1021]
gi|306893997|gb|EFN24766.1| Type II secretion system F domain protein [Sinorhizobium meliloti
AK83]
Length = 327
Score = 303 bits (777), Expect = 2e-80, Method: Composition-based stats.
Identities = 157/324 (48%), Positives = 226/324 (69%), Gaps = 2/324 (0%)
Query: 5 FFDLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQ 64
+ + + VA ++++ + Y++V P L G+L KRMKSVA ERE +R ++ L
Sbjct: 4 WIETLTDPNILVAALVSMAVLATFYSLVAPLLERGDLAKRMKSVATEREQIRARERARLN 63
Query: 65 KDS--ASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLV 122
++ + LR + + S+R V++LNL+ LVD+N VN+L+ AG+RS+ +LN L R
Sbjct: 64 AEATTGRASLRAQHNTSVREIVERLNLRKALVDDNTVNRLKTAGYRSQNALNTFLFARFC 123
Query: 123 VPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRA 182
+P +FL + +++IF + P +RV I YVGF AP+++I+N + KRQ SI+RA
Sbjct: 124 LPFLFLTVAVLYIFVLGNFADKPIMVRVSFAIGFAYVGFYAPNIFIANAISKRQQSIRRA 183
Query: 183 WPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENF 242
WPDALDLLLICVESG+S++ A+RRVA++I QS PL+EE++LT AELSFLP R++A EN
Sbjct: 184 WPDALDLLLICVESGVSMELAMRRVADEIAVQSPPLAEELVLTTAELSFLPERRIALENL 243
Query: 243 YNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPM 302
RT +D V++ TQALIQ+DRYGT + +LRVL E+R +R+ AEKKAA+L PKLTVPM
Sbjct: 244 GLRTGLDEVKSVTQALIQADRYGTPVAQALRVLAQESRDQRMTAAEKKAAALPPKLTVPM 303
Query: 303 IIFFLPVLILVIIGPAILSIIDTM 326
I+FFLPVL+ VI+GPA + + D
Sbjct: 304 ILFFLPVLVAVILGPAGIQVADKF 327
>gi|153008064|ref|YP_001369279.1| type II secretion system protein [Ochrobactrum anthropi ATCC 49188]
gi|151559952|gb|ABS13450.1| type II secretion system protein [Ochrobactrum anthropi ATCC 49188]
Length = 333
Score = 303 bits (777), Expect = 2e-80, Method: Composition-based stats.
Identities = 153/323 (47%), Positives = 216/323 (66%), Gaps = 1/323 (0%)
Query: 1 MPHYFFDLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQI 60
M + + V++F+ + +++P L L+ RMKSVA ERE +R ++
Sbjct: 1 MFSLLTQKLTDPQFLIGALITVAVFATVVTILMPVLSGSALKSRMKSVATEREAIRSRER 60
Query: 61 TSLQKDS-ASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVV 119
L +S + LR + + +R FV++L+LK L DE + LR AGFR + LNI L +
Sbjct: 61 ARLAAESDRRNSLRHQQKQGIREFVERLDLKRALADEKTIASLRQAGFRGQNPLNIFLFL 120
Query: 120 RLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSI 179
R V+P +++ I+IF L + F +R+ I GY GF AP++++SN KR+ SI
Sbjct: 121 RFVLPFGAMLIAAIYIFMLGVLADQTFFVRLLVCIFAGYAGFYAPNLYVSNRATKRKQSI 180
Query: 180 KRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAF 239
+RAWPDALDL+LICVESG+S + A RRVA++IG QSV L+EE++LT AELSFLP R+ A+
Sbjct: 181 RRAWPDALDLMLICVESGMSTEAAFRRVADEIGIQSVELAEELMLTNAELSFLPERRQAY 240
Query: 240 ENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLT 299
EN NRT +D V++ TQALIQ++RYGT + +LR L E+R RL++AEKKAA+L PKLT
Sbjct: 241 ENLANRTGLDPVKSVTQALIQAERYGTPVSQALRTLSQESRDLRLLDAEKKAAALPPKLT 300
Query: 300 VPMIIFFLPVLILVIIGPAILSI 322
VPMI+FFLPVL +VI+GPA + I
Sbjct: 301 VPMIVFFLPVLFIVILGPAFIQI 323
>gi|307315796|ref|ZP_07595310.1| Type II secretion system F domain protein [Sinorhizobium meliloti
BL225C]
gi|306898564|gb|EFN29237.1| Type II secretion system F domain protein [Sinorhizobium meliloti
BL225C]
Length = 327
Score = 303 bits (776), Expect = 3e-80, Method: Composition-based stats.
Identities = 157/324 (48%), Positives = 225/324 (69%), Gaps = 2/324 (0%)
Query: 5 FFDLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQ 64
+ + + VA ++++ + Y++V P L G+L KRMKSVA ERE +R ++ L
Sbjct: 4 WIETLTDPNILVAALVSMAVLATFYSLVAPLLERGDLAKRMKSVATEREQIRARERARLN 63
Query: 65 KDS--ASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLV 122
++ + LR + + S+R V++LNL+ LVD+N VN+L+ AG+RS+ +LN L R
Sbjct: 64 AEATTGRASLRAQHNTSVREIVERLNLRKALVDDNTVNRLKTAGYRSQNALNTFLFARFC 123
Query: 123 VPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRA 182
+P +FL + +++IF + P +RV I YVGF AP ++I+N + KRQ SI+RA
Sbjct: 124 LPFLFLTVAVLYIFVLGNFADKPIMVRVSFAIGFAYVGFYAPKIFIANAISKRQQSIRRA 183
Query: 183 WPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENF 242
WPDALDLLLICVESG+S++ A+RRVA++I QS PL+EE++LT AELSFLP R++A EN
Sbjct: 184 WPDALDLLLICVESGVSMELAMRRVADEIAVQSPPLAEELVLTTAELSFLPERRIALENL 243
Query: 243 YNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPM 302
RT +D V++ TQALIQ+DRYGT + +LRVL E+R +R+ AEKKAA+L PKLTVPM
Sbjct: 244 GLRTGLDEVKSVTQALIQADRYGTPVAQALRVLAQESRDQRMTAAEKKAAALPPKLTVPM 303
Query: 303 IIFFLPVLILVIIGPAILSIIDTM 326
I+FFLPVL+ VI+GPA + + D
Sbjct: 304 ILFFLPVLVAVILGPAGIQVADKF 327
>gi|319785603|ref|YP_004145079.1| type II secretion system F domain [Mesorhizobium ciceri biovar
biserrulae WSM1271]
gi|317171491|gb|ADV15029.1| Type II secretion system F domain [Mesorhizobium ciceri biovar
biserrulae WSM1271]
Length = 340
Score = 302 bits (775), Expect = 3e-80, Method: Composition-based stats.
Identities = 147/326 (45%), Positives = 214/326 (65%), Gaps = 3/326 (0%)
Query: 1 MPHYFFDLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQI 60
M +A+ A+++F+ ++ + +P+ G +L+ RMKSVA+ER+ LR QQ
Sbjct: 1 MTEQVIKTLTDPSFLIAMLVAIAVFATVFTL-LPAFGGNQLKSRMKSVALERDELRAQQR 59
Query: 61 TSL--QKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLV 118
L + D LR S +RN V +L+L+ L DE + KL+ AGFR + L L
Sbjct: 60 ARLAVEADRRRKGLREEQSIGMRNIVDRLDLRRALADEGTLQKLKVAGFRGQNPLTRFLF 119
Query: 119 VRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSS 178
RLV+P + L I+IF L + P +R+ IL+ Y GF AP ++++N KR+ S
Sbjct: 120 FRLVLPFVGFALAAIYIFVLGGLPDKPLVIRLFVCILVAYGGFYAPVIYVNNRATKRKQS 179
Query: 179 IKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVA 238
I+ AWPD LDL+LICVESG+S++ ALR+VA++IG QSV L+EE +LT AELS+LP R+ A
Sbjct: 180 IQMAWPDGLDLMLICVESGMSVEAALRKVADEIGAQSVALAEEFILTNAELSYLPERKQA 239
Query: 239 FENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKL 298
+EN +RT +D V++ +QAL+Q++RYGT + +LRVL +E+R R+ AEKKAA+L PKL
Sbjct: 240 YENLASRTGLDSVKSVSQALVQAERYGTPVAHALRVLAAESRDMRMNAAEKKAAALPPKL 299
Query: 299 TVPMIIFFLPVLILVIIGPAILSIID 324
TVPMI+FFLPVL +I+GPA + +
Sbjct: 300 TVPMILFFLPVLFAIILGPAGIQVSQ 325
>gi|325291654|ref|YP_004277518.1| components of type IV pilus [Agrobacterium sp. H13-3]
gi|325059507|gb|ADY63198.1| components of type IV pilus [Agrobacterium sp. H13-3]
Length = 328
Score = 302 bits (774), Expect = 4e-80, Method: Composition-based stats.
Identities = 162/328 (49%), Positives = 230/328 (70%), Gaps = 2/328 (0%)
Query: 1 MPHYFFDLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQI 60
M F + +AI +++F+ +Y +++P + KRMK+V+ ER+++R ++
Sbjct: 1 MTGSLFSSLTDPQTIIAILVTLAVFATLYTLIMPLFERKDFAKRMKAVSSERDLIRSRER 60
Query: 61 TSLQK--DSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLV 118
L + LR ++KS R V+K NL+ L D+N +NKLRAAGFRS+ +LN L
Sbjct: 61 ERLAAATRDGKASLRGNNNKSARRIVEKFNLQEALADKNTMNKLRAAGFRSQNALNTFLA 120
Query: 119 VRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSS 178
R V+P +FL L W+F L + F +R+ AV++ GY+GF AP++++SN + KRQ+S
Sbjct: 121 ARFVLPFVFLALAFTWVFVLGNLADKAFVVRLMAVLIFGYLGFYAPNIYVSNAMNKRQAS 180
Query: 179 IKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVA 238
I+RAWPDALDL+LIC+ESG+S++ A+RRVAE++G QS L+EEM+LT AELSFL +R++A
Sbjct: 181 IRRAWPDALDLMLICIESGVSMEAAMRRVAEEMGEQSPELAEEMMLTTAELSFLQDRRIA 240
Query: 239 FENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKL 298
ENF RTQ+D V++ QALIQ++RYGT + +LRVL E R ER+ EAEKKAA+L PKL
Sbjct: 241 LENFGMRTQLDGVKSVVQALIQAERYGTPLAQALRVLAQEGRDERMNEAEKKAAALPPKL 300
Query: 299 TVPMIIFFLPVLILVIIGPAILSIIDTM 326
TVPMIIFFLPVLI VI+GPA + + DT
Sbjct: 301 TVPMIIFFLPVLIAVILGPAGIRVADTF 328
>gi|86355869|ref|YP_467761.1| pilus assembly protein [Rhizobium etli CFN 42]
gi|86279971|gb|ABC89034.1| probable pilus assembly protein [Rhizobium etli CFN 42]
Length = 328
Score = 301 bits (772), Expect = 8e-80, Method: Composition-based stats.
Identities = 170/328 (51%), Positives = 234/328 (71%), Gaps = 2/328 (0%)
Query: 1 MPHYFFDLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQI 60
M + +A+ A+++F+ Y + IP G+L KRMK+V+ ERE +R ++
Sbjct: 1 MSQDLAATLTNPSMLIAVFVAIAVFATFYTIAIPFFERGDLNKRMKAVSTEREQIRARER 60
Query: 61 TSLQKD--SASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLV 118
+ + + + LR ++++S+R V++ NL+ LVDEN VNKLRAAGFRSE +LN LV
Sbjct: 61 ARMNTEPGAGKTSLRNQNNRSVRQIVERFNLRKALVDENTVNKLRAAGFRSENALNTFLV 120
Query: 119 VRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSS 178
R ++P +FL L W+FG L + +R+ AVI I Y+GF AP+++ISN + KRQ S
Sbjct: 121 ARFLLPFLFLALAAFWVFGLGGLADRGMPMRMLAVIGIAYLGFYAPNIYISNRMSKRQHS 180
Query: 179 IKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVA 238
IKRAWPDALDL+LICVESG+S++ A+RRV+E++G QS PL+EEM+LT AELSFLP+R+VA
Sbjct: 181 IKRAWPDALDLMLICVESGVSMEAAMRRVSEELGEQSPPLAEEMVLTTAELSFLPDRRVA 240
Query: 239 FENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKL 298
+N RTQ++ VR+ TQALIQ+DRYGT + +LRVL E R ER+ EAEKKAA+L PKL
Sbjct: 241 LDNLAARTQLELVRSVTQALIQADRYGTPVAQALRVLAQEGRDERMNEAEKKAAALPPKL 300
Query: 299 TVPMIIFFLPVLILVIIGPAILSIIDTM 326
TVPMI+FFLPVLI VI+GPA + + D
Sbjct: 301 TVPMILFFLPVLIAVILGPAGIQVADRF 328
>gi|260461944|ref|ZP_05810189.1| type II secretion system protein [Mesorhizobium opportunistum
WSM2075]
gi|259032191|gb|EEW33457.1| type II secretion system protein [Mesorhizobium opportunistum
WSM2075]
Length = 339
Score = 301 bits (770), Expect = 1e-79, Method: Composition-based stats.
Identities = 147/326 (45%), Positives = 219/326 (67%), Gaps = 3/326 (0%)
Query: 1 MPHYFFDLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQI 60
M L +A+ A+++F+ ++ + +P+ +L+ RMKSVA+ER+ LR +Q
Sbjct: 1 MTDQVIKSLTDPSLLIALLVAIAVFATVFTL-LPAFSGNQLKSRMKSVALERDELRAKQR 59
Query: 61 TSLQKDSASSR--LRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLV 118
L ++ R LR S +RN V +L+L+ L DE+ + KL+ AGFR + L L
Sbjct: 60 ARLATEADRRRKGLREEQSVGMRNIVDRLDLRRALADESTLQKLKVAGFRGQNPLTRFLF 119
Query: 119 VRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSS 178
RLV+P + L L +++IF L + P +R+ IL+ Y GF AP V+++N KR+ S
Sbjct: 120 FRLVLPFVGLALALVYIFVLGGLPDKPLVIRLFVCILVAYAGFYAPVVYVNNRATKRKQS 179
Query: 179 IKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVA 238
I+ AWPDALDL+LICVESG+S++ ALR+VA++IG QSV L+EE +LT AELS+L R+ A
Sbjct: 180 IQMAWPDALDLMLICVESGMSVEAALRKVADEIGAQSVALAEEFILTNAELSYLQERKQA 239
Query: 239 FENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKL 298
+EN +RT ++ VR+ +QAL+Q++RYGT + +LRVL +E+R +R+ AEKKAA+L PKL
Sbjct: 240 YENLASRTGLESVRSVSQALVQAERYGTPVAHALRVLAAESRDQRMNAAEKKAAALPPKL 299
Query: 299 TVPMIIFFLPVLILVIIGPAILSIID 324
TVPMI+FFLPVL +I+GPA + +
Sbjct: 300 TVPMILFFLPVLFAIILGPAGIQVSQ 325
>gi|222147177|ref|YP_002548134.1| component of type IV pilus [Agrobacterium vitis S4]
gi|221734167|gb|ACM35130.1| component of type IV pilus [Agrobacterium vitis S4]
Length = 326
Score = 300 bits (769), Expect = 2e-79, Method: Composition-based stats.
Identities = 153/319 (47%), Positives = 222/319 (69%)
Query: 8 LFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDS 67
L +A+ A+++F+ +Y ++ P L +L KRMK+V+ ERE++R ++ + +
Sbjct: 8 TLTNPTLLIAVLVAIAVFATLYTLISPLLERSDLNKRMKAVSSERELIRARERARMNSEG 67
Query: 68 ASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIF 127
LR D+ S R V++ NL+ LVD+ +++L+ AG RS+ +LN+ L R ++P +F
Sbjct: 68 GRGSLRNTDNSSARKIVERFNLRKALVDDKTMDRLKTAGLRSQNALNMFLTARFLLPFLF 127
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
L L WIF + PF +R A ++ GYVGF P+++ISN + KRQ SI+RAWPDAL
Sbjct: 128 LALATTWIFALHNMQSRPFAVRFLAAVVAGYVGFYLPNIYISNRITKRQHSIRRAWPDAL 187
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQ 247
DL+LICVESG+S++ A+RRVA+++ QS L+EEM+LT AELSFL +R+ A+EN NRTQ
Sbjct: 188 DLMLICVESGMSMEAAMRRVADEMASQSPALAEEMVLTTAELSFLQDRRTAYENLGNRTQ 247
Query: 248 MDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFL 307
++ V++ QALIQ++RYGT IG +LRVL E R ER+ AEKKAA+L PKLTVPMI+FFL
Sbjct: 248 LEIVKSVCQALIQAERYGTPIGQALRVLAQEGRDERMNAAEKKAAALPPKLTVPMILFFL 307
Query: 308 PVLILVIIGPAILSIIDTM 326
PVL+ VI+GPA + + D
Sbjct: 308 PVLVAVILGPAGIRVSDRF 326
>gi|227823976|ref|YP_002827949.1| components of type IV pilus TadC [Sinorhizobium fredii NGR234]
gi|227342978|gb|ACP27196.1| components of type IV pilus TadC [Sinorhizobium fredii NGR234]
Length = 327
Score = 299 bits (767), Expect = 3e-79, Method: Composition-based stats.
Identities = 150/321 (46%), Positives = 225/321 (70%), Gaps = 2/321 (0%)
Query: 8 LFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDS 67
+ +A+ ++++ + Y++ +P G+L KRMKSVA ERE +R ++ L ++
Sbjct: 7 TLTDPNIIIAVLVSMAVLATFYSLAVPFFERGDLTKRMKSVATEREQIRARERARLNAEA 66
Query: 68 ASSR--LRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPI 125
++ + LR + + S+R V++LNL+ LVD+N VN+L+ AG+RS+ +LN L R +P
Sbjct: 67 SAGKASLRAQHNTSVRQIVERLNLRQALVDDNTVNRLKTAGYRSQNALNTFLFARFCLPF 126
Query: 126 IFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPD 185
+FL + +++IF + PF LR+ + Y+GF AP+++I+N + KRQ SI+RAWPD
Sbjct: 127 LFLTVAVVYIFVLGNFADKPFMLRICFALGFAYLGFYAPNIFIANAISKRQHSIRRAWPD 186
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
ALDLLLICVESG+S++ A+RRVA++I QS L+EE++LT AELSFLP+R++A EN R
Sbjct: 187 ALDLLLICVESGVSMELAMRRVADEIAAQSSALAEELVLTTAELSFLPDRRIALENLGLR 246
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
+ ++ V+ QALIQ+DRYGT I +LRVL E+R +R+ AEKKAA+L PKLTVPMI+F
Sbjct: 247 SGLEEVKAVMQALIQADRYGTPIAQALRVLAQESRDQRMTAAEKKAAALPPKLTVPMILF 306
Query: 306 FLPVLILVIIGPAILSIIDTM 326
FLPVL+ VI+GPA + + D
Sbjct: 307 FLPVLVAVILGPAGIQVADKF 327
>gi|220923700|ref|YP_002499002.1| type II secretion system protein [Methylobacterium nodulans ORS
2060]
gi|219948307|gb|ACL58699.1| type II secretion system protein [Methylobacterium nodulans ORS
2060]
Length = 321
Score = 295 bits (756), Expect = 6e-78, Method: Composition-based stats.
Identities = 141/318 (44%), Positives = 205/318 (64%), Gaps = 2/318 (0%)
Query: 8 LFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDS 67
L ++L VA A+S F V P L L R++ VA E E +R ++ LQ
Sbjct: 5 LTSHSDLLVAGIAAISAFCACMVVSWPYLVRDPLASRLRQVADETEAIRIRERAKLQAGH 64
Query: 68 ASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIF 127
S LRT K ++ +LNL D +V +LR AG+R + + L VRL++P +
Sbjct: 65 GPS-LRTEPKKLFKDIFDRLNLARQAEDGAVVQRLRMAGYRGQGPVVTFLAVRLIMPFVM 123
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
+ + ++F + L+ PF L++G + + Y+G+ AP++++ N + KRQ++I+RAWPDAL
Sbjct: 124 FAVAMFYVFVVLR-LDGPFVLKLGIALAVAYLGYYAPAIFVKNRISKRQTAIRRAWPDAL 182
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQ 247
DLLLICVESG+ ++ A R+VA++IG QS L+EE+ LT AELS+LP+R+ A+EN RT
Sbjct: 183 DLLLICVESGMGVESAFRKVADEIGPQSPELAEELSLTTAELSYLPDRRKAYENLAERTG 242
Query: 248 MDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFL 307
+D V+ +LIQ+++YGT +G +LRVL E R R+ EAEKKAA+L PKLTVPMI+FFL
Sbjct: 243 LDGVKGVVTSLIQAEKYGTPVGQTLRVLAQENRDMRMTEAEKKAAALPPKLTVPMILFFL 302
Query: 308 PVLILVIIGPAILSIIDT 325
PVL VII PA + I +T
Sbjct: 303 PVLFAVIITPAAIQIANT 320
>gi|118589708|ref|ZP_01547113.1| hypothetical protein SIAM614_04690 [Stappia aggregata IAM 12614]
gi|118437794|gb|EAV44430.1| hypothetical protein SIAM614_04690 [Stappia aggregata IAM 12614]
Length = 325
Score = 291 bits (744), Expect = 1e-76, Method: Composition-based stats.
Identities = 135/324 (41%), Positives = 211/324 (65%), Gaps = 3/324 (0%)
Query: 6 FDLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQK 65
D +++ A+ +++ ++++V+P L L+ RMKSVA+ER+ LR ++ LQ
Sbjct: 3 IDTLASSQFLAAVLAMIAVTGTVFSLVMPLLSRDTLKSRMKSVAIERDKLRAKERARLQA 62
Query: 66 D--SASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVV 123
A + LR + +++ V +LNLK L D+ V+ LR AG+R L LV R+V+
Sbjct: 63 THADAKASLRNQPKAQMKSLVDRLNLKEALSDQTTVDNLRMAGYRGAAPLYYFLVARIVI 122
Query: 124 PIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAW 183
P + + F + P ++ + + +G P++++ N + KR+ +I+RAW
Sbjct: 123 PAGIFTFSVAYAFLV-LPDDLPALSKICFCLGLAGLGAFMPNLYLKNKIDKRKLTIQRAW 181
Query: 184 PDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFY 243
PDALDL+LICVESG+SI++ RRVAE++G QSV L+EE+ LT AELS+L +R++A+EN
Sbjct: 182 PDALDLMLICVESGMSIEEGFRRVAEEVGVQSVELAEELSLTTAELSYLSDRRIAYENLA 241
Query: 244 NRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMI 303
RT +D V+N ALIQ++RYGT +G +LR + +TR +R+ AE+KAASL PKLTVPMI
Sbjct: 242 KRTGVDGVKNVMMALIQAERYGTPVGTALRTMADDTREQRMQMAEQKAASLPPKLTVPMI 301
Query: 304 IFFLPVLILVIIGPAILSIIDTMK 327
+FFLPVL +I+GPA++ ++DT +
Sbjct: 302 MFFLPVLFFIIMGPAVIQVMDTFR 325
>gi|329847258|ref|ZP_08262286.1| bacterial type II secretion system protein F domain protein
[Asticcacaulis biprosthecum C19]
gi|328842321|gb|EGF91890.1| bacterial type II secretion system protein F domain protein
[Asticcacaulis biprosthecum C19]
Length = 343
Score = 290 bits (742), Expect = 3e-76, Method: Composition-based stats.
Identities = 133/324 (41%), Positives = 200/324 (61%), Gaps = 3/324 (0%)
Query: 1 MPHYFFDLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQI 60
M + + + + L +AI AV +F + + +L+KR+K+VA RE LR+Q
Sbjct: 1 MTEFASTIMNPSNL-IAIAVAVLVFFTVITLGKSMTSGEQLDKRLKAVAQRREELRRQSR 59
Query: 61 TSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVR 120
+ K+ S LR +D R FV K NL+ +L D + L AGFR ++ R
Sbjct: 60 QQIVKE-QSGGLRHKDDGMARGFVDKFNLRKLLEDPKVAENLAMAGFRGPKPISTFYFFR 118
Query: 121 LVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIK 180
++P + L +IF + + +++ + + G+ AP+++ISN KR+ SI
Sbjct: 119 FLMPFVLGALATFYIFVVNDFGQK-MNMKILICVAMFVAGYYAPNIYISNTASKRRQSIV 177
Query: 181 RAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFE 240
A+PDALDLLLICVE+G+SI+ AL +V+++IGG S+PL+EEM L +AELS+LP R+ A+E
Sbjct: 178 AAFPDALDLLLICVEAGMSIETALHKVSQEIGGTSIPLAEEMSLLVAELSYLPERRQAYE 237
Query: 241 NFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV 300
F RT +++ A+IQ+++YGT +G +LRV+ E R RL AEKKAA+L +LTV
Sbjct: 238 GFSKRTSHPGIKSVCTAMIQAEKYGTPLGTALRVMAKENRELRLSAAEKKAAALPAQLTV 297
Query: 301 PMIIFFLPVLILVIIGPAILSIID 324
PMI+FFLPVL +VI+GPA L +ID
Sbjct: 298 PMIVFFLPVLFVVILGPAALKVID 321
>gi|307943150|ref|ZP_07658495.1| type II secretion system protein [Roseibium sp. TrichSKD4]
gi|307773946|gb|EFO33162.1| type II secretion system protein [Roseibium sp. TrichSKD4]
Length = 326
Score = 289 bits (740), Expect = 4e-76, Method: Composition-based stats.
Identities = 132/326 (40%), Positives = 208/326 (63%), Gaps = 6/326 (1%)
Query: 6 FDLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQ- 64
F D T++ AI + + +Y +++P L+ RMKSVA+ER+ +R ++ L
Sbjct: 3 FAGMDFTQVITAIMAMICVSGTLYVLIMPLFERDGLKSRMKSVALERDEIRMRERARLNN 62
Query: 65 --KDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLV 122
KD S ++ ++ +++ ++ NL+++L D+ + +L AGFR + + R+
Sbjct: 63 AGKDGRGSLRGSQPTQRMKDLTERFNLQSVLTDKEVKMRLAQAGFRGPGPIYKYALGRVF 122
Query: 123 VPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRA 182
P + ++ + + ++ Y F + +G+ P++++ N ++KRQ +I RA
Sbjct: 123 APPVLFVVSLFYA---TAVMGYGFLTGLLVGAAFAGLGYFVPNIYLQNTIEKRQKAIGRA 179
Query: 183 WPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENF 242
WPDALDL+LICVESG+SI+ A+++VA++IG QS L+EE+ LT AELS+L +R++AFEN
Sbjct: 180 WPDALDLMLICVESGMSIEVAMQKVADEIGVQSADLAEELTLTTAELSYLQDRRIAFENL 239
Query: 243 YNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPM 302
NRT MD ++N ALIQ++RYGT + +LR + +TR +R+ EAEKKAASL PKLTVPM
Sbjct: 240 GNRTGMDNIKNVVMALIQAERYGTPVAKALRAMSDDTRDQRMQEAEKKAASLPPKLTVPM 299
Query: 303 IIFFLPVLILVIIGPAILSIIDTMKD 328
I+FFLPVL VI+ PAIL I+D M
Sbjct: 300 IVFFLPVLFAVIMTPAILQIMDVMGG 325
>gi|83859362|ref|ZP_00952883.1| hypothetical protein OA2633_13195 [Oceanicaulis alexandrii
HTCC2633]
gi|83852809|gb|EAP90662.1| hypothetical protein OA2633_13195 [Oceanicaulis alexandrii
HTCC2633]
Length = 326
Score = 289 bits (739), Expect = 5e-76, Method: Composition-based stats.
Identities = 134/324 (41%), Positives = 204/324 (62%), Gaps = 4/324 (1%)
Query: 5 FFDLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQ 64
F A+ A +F+ ++ + P++G L KRMK+VA RE LR++ L+
Sbjct: 4 FIRWIVTPANLFAVIAAGLVFATVWTLSAPAMGGDNLNKRMKAVANRREELRRKAREELE 63
Query: 65 KDSASSR--LRTRDSKSL-RNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRL 121
K + + LR +D++SL R V+KLNL +L D N+ KL AG+R + + R
Sbjct: 64 KSANEKKGGLRGKDTRSLYRKVVEKLNLATLLEDANLKTKLIQAGYRGQGPVYAFYFARF 123
Query: 122 VVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKR 181
+P + +LG ++++ + P R+ V+++ +G+ AP +++SN KR+ SI +
Sbjct: 124 AIPPVMGLLGFVYLWVVNDFG-LPVMQRLTIVMVLAVLGYYAPGIYLSNQAAKRRDSIMQ 182
Query: 182 AWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFEN 241
A+PD+LDL+LICVE+G+SI+ AL +VA +IG S+ L+EE+ LT AEL++L +R+ AFEN
Sbjct: 183 AFPDSLDLMLICVEAGMSIEAALHKVAAEIGTNSMELAEELSLTNAELAYLQDRRAAFEN 242
Query: 242 FYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVP 301
RT + V+ ALIQ++RYGT +G +LRV+ E R R+ AEKKAA+L KLTVP
Sbjct: 243 LGMRTNLPGVKAVATALIQAERYGTPLGQALRVMAKENRDMRMSNAEKKAAALPAKLTVP 302
Query: 302 MIIFFLPVLILVIIGPAILSIIDT 325
MI+FFLPVL +VIIGPA +S +
Sbjct: 303 MILFFLPVLFVVIIGPAAISFQNM 326
>gi|163757632|ref|ZP_02164721.1| putative component of pilus protein [Hoeflea phototrophica DFL-43]
gi|162285134|gb|EDQ35416.1| putative component of pilus protein [Hoeflea phototrophica DFL-43]
Length = 331
Score = 289 bits (739), Expect = 5e-76, Method: Composition-based stats.
Identities = 158/323 (48%), Positives = 227/323 (70%), Gaps = 5/323 (1%)
Query: 9 FDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKD-- 66
V I +V++F+ ++ ++ P G+L+KRMKS A+ER+ +R ++ L +
Sbjct: 9 LTDPAYLVPILVSVAVFATLFTIMAPYFERGDLDKRMKSAALERDEIRARERARLHAEQS 68
Query: 67 ---SASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVV 123
S S+ LR ++ S+R V++LNL+ L D+ V KLRAAG+R++ +LN+ L+ R V+
Sbjct: 69 RGGSKSAGLRAHNNASVRGIVEQLNLRKALADDATVAKLRAAGYRTQNALNMFLLARFVL 128
Query: 124 PIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAW 183
P F + ++++F + + + P +R+ A I+ Y GF AP+++ISN +KRQ SIK AW
Sbjct: 129 PFFFFVAAVVYVFVLENMTDKPTTVRLLACIVAAYAGFYAPNIFISNQSKKRQQSIKMAW 188
Query: 184 PDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFY 243
PDALDLLLICVESG+SI+ A++RVAE+I QS L+EE LLT AELS+L +R+VAFEN
Sbjct: 189 PDALDLLLICVESGVSIEAAMKRVAEEIAIQSTALAEEFLLTTAELSYLQDRRVAFENLG 248
Query: 244 NRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMI 303
NRT ++ V++ TQALIQS+RYGT I +LRVL E+R R+ EAEKKAA+L PKLTVPMI
Sbjct: 249 NRTGLEAVKSVTQALIQSERYGTPIAQALRVLAQESRDARMTEAEKKAAALPPKLTVPMI 308
Query: 304 IFFLPVLILVIIGPAILSIIDTM 326
+FFLPVLI VI+GPA + ++D
Sbjct: 309 LFFLPVLIGVILGPAAIQVMDRF 331
>gi|254473723|ref|ZP_05087118.1| type II secretion system protein [Pseudovibrio sp. JE062]
gi|211957109|gb|EEA92314.1| type II secretion system protein [Pseudovibrio sp. JE062]
Length = 324
Score = 288 bits (737), Expect = 1e-75, Method: Composition-based stats.
Identities = 129/312 (41%), Positives = 205/312 (65%), Gaps = 3/312 (0%)
Query: 13 ELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSR- 71
+ + + T +++ ++A++ P +L+ RMKSVA+ER+ +R ++ L ++ + R
Sbjct: 10 NIFMVVLTLIAVSGTVFALLSPLFERDDLKSRMKSVALERDKIRSRERNRLAQEKENQRV 69
Query: 72 -LRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLIL 130
LR+ +R FV K +LK +L +N+ KL+ AG+R L L +++++P+ F
Sbjct: 70 SLRSNPKDGVREFVDKYDLKKLLSSDNVAKKLKMAGYRGVSPLYTYLFLQIILPVAFFAA 129
Query: 131 GIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLL 190
++ + L+ PF V + + +GF PS+ + N V KRQ SI+ AWPDA+DL+
Sbjct: 130 SFFYLVVILQ-LDIPFAGVVACSLGVAAIGFYGPSIIVQNKVMKRQESIRLAWPDAMDLM 188
Query: 191 LICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDC 250
LICVESG+SI+ A ++VAE++G QS L+EE++L AELS+L R+ A++N RT +D
Sbjct: 189 LICVESGMSIEAAFKKVAEEVGPQSTALAEELILANAELSYLDERRKAYQNLAERTGLDG 248
Query: 251 VRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVL 310
V+N AL Q+++YGT IG +LRVL E+R ER+ EAE+KAA+L PKLTVPM++FFLPVL
Sbjct: 249 VKNVVVALSQAEKYGTPIGYALRVLSEESRQERMQEAERKAAALPPKLTVPMMLFFLPVL 308
Query: 311 ILVIIGPAILSI 322
+V+I PA++ +
Sbjct: 309 FIVLIAPAVIKV 320
>gi|146338118|ref|YP_001203166.1| putative pilus assembly protein membrane protein [Bradyrhizobium
sp. ORS278]
gi|146190924|emb|CAL74929.1| putative pilus assembly protein; putative membrane protein
[Bradyrhizobium sp. ORS278]
Length = 324
Score = 286 bits (733), Expect = 3e-75, Method: Composition-based stats.
Identities = 134/322 (41%), Positives = 194/322 (60%), Gaps = 2/322 (0%)
Query: 1 MPHYFFDLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQI 60
M + A++ + +Y +++P L KRMK+VA ERE +++++
Sbjct: 1 MVDFLVTKLHDPHFMTMFFAAIAASATVYTLIMPLFAGENLNKRMKAVASERERIKQRER 60
Query: 61 TSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVR 120
L S LR + + V NL L E +KL AG+R + L R
Sbjct: 61 ERLNAGEKVS-LRQTPKQLVAKVVDDFNLTKWLAQEAARDKLIMAGYRGQAPYITFLFGR 119
Query: 121 LVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIK 180
LV P++ ++++F LE +++G + + Y+G AP +++SN + KRQ SI+
Sbjct: 120 LVTPVVLFAGSVLYVFVIAH-LEKSMPVKIGICVGMAYLGLQAPMLFLSNAISKRQLSIR 178
Query: 181 RAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFE 240
RA+PDALDLLLIC+ESG+SI+ A RRVA +I QS+ LSEE LT AELS+L +R+VA+E
Sbjct: 179 RAFPDALDLLLICIESGMSIEAAFRRVAIEISSQSIALSEEFTLTTAELSYLQDRKVAYE 238
Query: 241 NFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV 300
N RT ++ V++ AL QS+RYGT +G SLRV+ E R R+ EAEKKAA+L PKLTV
Sbjct: 239 NLARRTGLEGVKSVCLALQQSERYGTPLGQSLRVMAQENRDMRMNEAEKKAAALPPKLTV 298
Query: 301 PMIIFFLPVLILVIIGPAILSI 322
PMI+FFLPVL +VI+GP + +
Sbjct: 299 PMILFFLPVLFVVILGPTGIKV 320
>gi|148258240|ref|YP_001242825.1| putative pilus assembly protein [Bradyrhizobium sp. BTAi1]
gi|146410413|gb|ABQ38919.1| putative pilus assembly protein [Bradyrhizobium sp. BTAi1]
Length = 324
Score = 285 bits (730), Expect = 5e-75, Method: Composition-based stats.
Identities = 132/322 (40%), Positives = 195/322 (60%), Gaps = 2/322 (0%)
Query: 1 MPHYFFDLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQI 60
M + + A++ + +Y +++P L KRMK+VA ERE +++++
Sbjct: 1 MVDFLVTKLHDPHFMTMLFAAIAASATVYTLIMPLFAGENLNKRMKAVASERERIKQRER 60
Query: 61 TSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVR 120
+ S LR + + V NL L E KL AG+R + L R
Sbjct: 61 ERMNAGEKVS-LRQTPKQLVAKVVDDFNLTKWLAQEAAREKLIMAGYRGQAPYITFLFAR 119
Query: 121 LVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIK 180
LV P++ + ++++F L+ +++G I + Y+G AP +++SN + KRQ SIK
Sbjct: 120 LVTPVVLFVGSVLYVFVIAN-LQKSLPIKIGICIGMAYLGLQAPMLFLSNAISKRQLSIK 178
Query: 181 RAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFE 240
RA+PDALDLLLIC+ESG+SI+ A R+V+ +I QS+ LSEE LT AELS+L +R+VA+E
Sbjct: 179 RAFPDALDLLLICIESGMSIEAAFRKVSMEIASQSIALSEEFTLTTAELSYLQDRKVAYE 238
Query: 241 NFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV 300
N RT ++ V++ AL QS+RYGT +G SLRV+ E R R+ EAEKKAA+L PKLTV
Sbjct: 239 NLARRTGLEGVKSVCLALQQSERYGTPLGQSLRVMAQENRDMRMNEAEKKAAALPPKLTV 298
Query: 301 PMIIFFLPVLILVIIGPAILSI 322
PMI+FFLPVL +VI+GP + +
Sbjct: 299 PMILFFLPVLFVVILGPTGIKV 320
>gi|315497460|ref|YP_004086264.1| type II secretion system f domain protein [Asticcacaulis
excentricus CB 48]
gi|315415472|gb|ADU12113.1| Type II secretion system F domain protein [Asticcacaulis
excentricus CB 48]
Length = 326
Score = 285 bits (729), Expect = 8e-75, Method: Composition-based stats.
Identities = 136/329 (41%), Positives = 206/329 (62%), Gaps = 3/329 (0%)
Query: 1 MPHYFFDLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQI 60
M F L L +A+ A+ F + ++ SL +L+KRMK+VA RE LR+Q
Sbjct: 1 MKELAFTLMQPANL-IALVVAILAFLAVLTLLRSSLSGEQLDKRMKAVAQRREELRRQSR 59
Query: 61 TSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVR 120
S+ + S S LR D + V +LNLK +L D +V+KL AGFR + R
Sbjct: 60 QSMVQASNSG-LRQTDESLYKRIVDRLNLKTLLEDPKVVDKLAMAGFRGPKPITTFYFFR 118
Query: 121 LVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIK 180
++P + L +I+ + + P +++ + + G+ AP+++ISN KR++SI
Sbjct: 119 FLMPFVMGALSTFYIYVVNDFGQPP-NIKILICVAMFVAGYYAPNIYISNAASKRRASIV 177
Query: 181 RAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFE 240
A+PDALDLLLICVE+G+SI+ AL++V+++IG S+ L+EE+ L +AELS+LP R++A+E
Sbjct: 178 TAFPDALDLLLICVEAGMSIEAALQKVSQEIGSASIELAEELSLLVAELSYLPERRMAYE 237
Query: 241 NFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV 300
RT +++ A+IQ+++YGT +G +LRV+ E R RL AEKKAA+L +LTV
Sbjct: 238 GLARRTNYPGIKSVCTAMIQAEKYGTPLGTALRVMAKENRELRLSAAEKKAAALPAQLTV 297
Query: 301 PMIIFFLPVLILVIIGPAILSIIDTMKDH 329
PMI+FFLPVL +VI+GPAIL+I+D M
Sbjct: 298 PMIVFFLPVLFVVILGPAILNIMDMMGKK 326
>gi|300021859|ref|YP_003754470.1| type II secretion system protein F [Hyphomicrobium denitrificans
ATCC 51888]
gi|299523680|gb|ADJ22149.1| Type II secretion system F domain protein [Hyphomicrobium
denitrificans ATCC 51888]
Length = 326
Score = 284 bits (728), Expect = 1e-74, Method: Composition-based stats.
Identities = 128/322 (39%), Positives = 199/322 (61%), Gaps = 2/322 (0%)
Query: 5 FFDLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQ 64
F + + AV +F+ + ++ +P L ++ +RMK +AVER +R ++ +
Sbjct: 4 FIETMMNPHFVATMLAAVCVFATVLSIALPMLQRDQMNRRMKEMAVERGKMRSARLAEMS 63
Query: 65 -KDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVV 123
KD S++LR ++ V +L L+ ++ I L+ AG R + ++ L R+
Sbjct: 64 SKDRPSNKLRPTAKGFMQRIVDELKLRERFDNDEIRENLKRAGLRGQANIVTFLFFRVAA 123
Query: 124 PIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAW 183
PII L + ++F P + VG + G++GF P+V+ISN VQKRQ+SIK+A+
Sbjct: 124 PIIIFFLALFYVFVLYDTGHAPI-VNVGIALGAGFLGFYLPNVFISNRVQKRQTSIKQAF 182
Query: 184 PDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFY 243
PDALD+LLICV+SG+S++ A +V ++I QS+ L+EEM LT AELS+L +R+ A+EN
Sbjct: 183 PDALDMLLICVQSGMSVEAAFAKVGKEIANQSIELAEEMALTTAELSYLQDRRQAYENLA 242
Query: 244 NRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMI 303
RT + V+ AL+Q++RYGT +G +LR + E R R EAE+KA++L PKLTVPMI
Sbjct: 243 KRTGLPGVKGVATALVQAERYGTPVGQALRTMAKENREIRQSEAERKASALPPKLTVPMI 302
Query: 304 IFFLPVLILVIIGPAILSIIDT 325
+FFLPVL +VI+GPA + +
Sbjct: 303 VFFLPVLFIVILGPAGIGYMQM 324
>gi|254419878|ref|ZP_05033602.1| Bacterial type II secretion system protein F domain [Brevundimonas
sp. BAL3]
gi|196186055|gb|EDX81031.1| Bacterial type II secretion system protein F domain [Brevundimonas
sp. BAL3]
Length = 326
Score = 284 bits (728), Expect = 1e-74, Method: Composition-based stats.
Identities = 122/322 (37%), Positives = 202/322 (62%), Gaps = 2/322 (0%)
Query: 5 FFDLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQ 64
F + +++ V +F+ + ++ G +L++RMK+V+ R+ L+++ ++
Sbjct: 4 FIRFITDPQNLLSLGVGVLVFATVLTLLSSMTGGVKLDQRMKAVSERRDELKRRSRAAIH 63
Query: 65 KDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVP 124
R T D + V +LNL +L D + +++ AG+R L R P
Sbjct: 64 TGPGGLRH-TDDEGFKKRVVDRLNLTKLLEDPKVADQMAQAGYRGPRPLTTFYFFRFASP 122
Query: 125 IIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWP 184
IFL++ ++F K++++P ++ A + GF AP+++++N + KR++SI +A+P
Sbjct: 123 FIFLMVVAFYMFVI-KVVDWPTMQKITACVAAAVAGFYAPNLFLTNRITKRRTSIMQAFP 181
Query: 185 DALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYN 244
DALDLLLICVE+G+SI+ A+ +V+++IG S+ L+EE+ L AELS+LP+R++A+EN
Sbjct: 182 DALDLLLICVEAGMSIEAAIAKVSQEIGTSSIELAEELSLLSAELSYLPDRRMAYENLGK 241
Query: 245 RTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMII 304
RT V++ A+ Q++ YGT + +LRV+ E R RL AEKKAA+L +LTVPMI+
Sbjct: 242 RTNHPGVKSVAVAMTQAETYGTPLSSALRVMAKENRDLRLSAAEKKAAALPAQLTVPMIL 301
Query: 305 FFLPVLILVIIGPAILSIIDTM 326
FFLPVL +VI+GPAIL+I+DTM
Sbjct: 302 FFLPVLFIVILGPAILNIMDTM 323
>gi|114568975|ref|YP_755655.1| type II secretion system protein [Maricaulis maris MCS10]
gi|114339437|gb|ABI64717.1| type II secretion system protein [Maricaulis maris MCS10]
Length = 331
Score = 283 bits (724), Expect = 3e-74, Method: Composition-based stats.
Identities = 130/320 (40%), Positives = 189/320 (59%), Gaps = 4/320 (1%)
Query: 6 FDLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQK 65
D +A+ A+ +F+ + + P+LGS +L+KR+KSV RE LR++ ++
Sbjct: 10 RDFLTDPGSLIAMVAAILVFATVVTLTSPALGSDKLDKRIKSVNNRREELRRKNRAAIDA 69
Query: 66 D---SASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLV 122
+ +R V+ L+L+ D + KL AG R + RL+
Sbjct: 70 AAMAGKGTIRGAEAKGLVRKVVEALDLQKAFEDPALHEKLAQAGMRGQRPAMTFYFFRLL 129
Query: 123 VPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRA 182
P I + + ++F + P RV +G +G+ AP++++SNL KRQ SI A
Sbjct: 130 SPFILFGVALFYVFMINDFG-LPQITRVCFSFGLGLLGYYAPNLYLSNLAAKRQQSIMGA 188
Query: 183 WPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENF 242
+PD LDLLLICVESG+SI+ A +V+ ++G QS+ L+EE+ LT AELS+L +R+VA+EN
Sbjct: 189 FPDGLDLLLICVESGMSIEAAFHKVSSEVGSQSIELAEELSLTTAELSYLQDRRVAYENL 248
Query: 243 YNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPM 302
RT V+ +LIQ++RYGT +G +LRV+ E R RL AEKKAASL KLTVPM
Sbjct: 249 AKRTNHPGVKAVCTSLIQAERYGTPLGQALRVMAKENRDMRLAAAEKKAASLPAKLTVPM 308
Query: 303 IIFFLPVLILVIIGPAILSI 322
IIFFLPVL +VI+GPAI+
Sbjct: 309 IIFFLPVLFVVILGPAIIRF 328
>gi|85713510|ref|ZP_01044500.1| type II secretion system protein [Nitrobacter sp. Nb-311A]
gi|85699414|gb|EAQ37281.1| type II secretion system protein [Nitrobacter sp. Nb-311A]
Length = 325
Score = 283 bits (724), Expect = 3e-74, Method: Composition-based stats.
Identities = 139/327 (42%), Positives = 199/327 (60%), Gaps = 2/327 (0%)
Query: 1 MPHYFFDLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQI 60
M + F + + A++ + +Y ++ P + L KRMK+VA ERE +R+++
Sbjct: 1 MLDILIEKFHDPQFMTMVLAAIAASATVYTLITPFFAADGLTKRMKAVASERERIRQRER 60
Query: 61 TSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVR 120
L K S LR + + V+ LNL + E KL AG+R + L R
Sbjct: 61 ERLSKSEKVS-LRQAPKQFVSKIVEDLNLGKWVAQEAAREKLVMAGYRGQAPYVTFLFFR 119
Query: 121 LVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIK 180
+V PI+ LI I ++F + P +++G I + G AP +++ N + KRQ SIK
Sbjct: 120 MVTPIVMLIGAIAYVFLLSH-TQQPTHVKIGICIGATFFGLQAPMLFLKNAITKRQLSIK 178
Query: 181 RAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFE 240
RA+PDALDLLLIC+ESG+SI+ A R+V+ +IG QSV L+EE LT AELS+L +R++A+E
Sbjct: 179 RAFPDALDLLLICLESGMSIEVAFRKVSTEIGNQSVALAEEFTLTTAELSYLQDRKIAYE 238
Query: 241 NFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV 300
N NRT ++ V++ AL QS+RYGT + SLRV+ E R R+ EAEKKAA+L PKLTV
Sbjct: 239 NLANRTGVEGVKSVCLALQQSERYGTPLAQSLRVMAQENRDMRMTEAEKKAAALPPKLTV 298
Query: 301 PMIIFFLPVLILVIIGPAILSIIDTMK 327
PMI+FFLPVL +VI+GP + I M
Sbjct: 299 PMIVFFLPVLFVVILGPTGIKIAAQMH 325
>gi|110636326|ref|YP_676534.1| type II secretion system protein [Mesorhizobium sp. BNC1]
gi|110287310|gb|ABG65369.1| type II secretion system protein [Chelativorans sp. BNC1]
Length = 329
Score = 282 bits (723), Expect = 4e-74, Method: Composition-based stats.
Identities = 151/319 (47%), Positives = 208/319 (65%), Gaps = 4/319 (1%)
Query: 7 DLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKD 66
+A+ ++++F+ I+ VV P G L+ RMK+VA+ERE LR +Q L +
Sbjct: 6 TTLTDPSFLLALLVSIAVFATIFTVV-PVGGGDPLKARMKTVALEREELRAKQRARLAAE 64
Query: 67 SASSR---LRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVV 123
+ R LR D S+R V +L+L+ L DE+ V LR AG+R + L L RLV+
Sbjct: 65 AERRRAGGLRREDRSSMRAIVDQLDLRRALADESTVAMLRTAGYRGQSPLTRFLFFRLVL 124
Query: 124 PIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAW 183
P L+L + +IF L +R+ IL Y GF P ++ISN KR+ SI+ AW
Sbjct: 125 PPAGLMLALFYIFVMGGLAAQSLPIRIFVCILAAYGGFYLPVLYISNQASKRKKSIQLAW 184
Query: 184 PDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFY 243
PDALDLLLICVESG+S++QA RRVA++IG QSV L+EE++LT AELSFL R+ A+EN
Sbjct: 185 PDALDLLLICVESGVSVEQAFRRVADEIGTQSVALAEELVLTTAELSFLQERRQAYENLA 244
Query: 244 NRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMI 303
RT ++ V++ +QALIQ++RYGT I +LRVL E+R R+ AEKKAA+L PKLTVPMI
Sbjct: 245 ARTGLESVKSVSQALIQAERYGTPISQALRVLADESREARMNAAEKKAAALPPKLTVPMI 304
Query: 304 IFFLPVLILVIIGPAILSI 322
+FFLPVL +I+GPA + +
Sbjct: 305 LFFLPVLFAIILGPAAIQL 323
>gi|167648147|ref|YP_001685810.1| type II secretion system protein [Caulobacter sp. K31]
gi|167350577|gb|ABZ73312.1| type II secretion system protein [Caulobacter sp. K31]
Length = 328
Score = 281 bits (720), Expect = 7e-74, Method: Composition-based stats.
Identities = 136/320 (42%), Positives = 200/320 (62%), Gaps = 2/320 (0%)
Query: 7 DLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKD 66
+L D T L A A+ +F+ I + P L S LE R+KSVA RE LR++ ++ +
Sbjct: 4 ELTDPTNLLSAFI-AIVVFATIVTLAAPMLSSNGLEGRLKSVANRREELRRRSREAMSQK 62
Query: 67 SASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPII 126
LR D +N V +L L +L D +V+KL AGFR ++ R V+P
Sbjct: 63 GGGGTLRHADEGMYKNVVDRLQLSRLLEDPKVVDKLAQAGFRGPKPVSTFYFFRFVMPFA 122
Query: 127 FLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDA 186
F ++ +++ + P Q ++ A VG+ AP+++ISN+ QKR+ SI A+PDA
Sbjct: 123 FALVAAFYLYVINGFGLLPVQ-KIAACFFALTVGYYAPNIYISNIAQKRRESIVAAFPDA 181
Query: 187 LDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRT 246
LDL+LICVESG+SI+ A+ +V ++GG S+ L+EE+ L AELS+LP R++A+E RT
Sbjct: 182 LDLMLICVESGMSIEAAIAKVGAEVGGASIELAEELSLLTAELSYLPERRLAYEGLARRT 241
Query: 247 QMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFF 306
+R+ A+IQ++RYGT +G +LRV+ E R RL AEKKAA+L KLTVPMI+FF
Sbjct: 242 NHPGIRSVVTAMIQAERYGTPLGAALRVMAKENRDLRLSAAEKKAAALPAKLTVPMILFF 301
Query: 307 LPVLILVIIGPAILSIIDTM 326
LPVL +VI+GPA ++I+D +
Sbjct: 302 LPVLFIVIMGPAAINIMDAI 321
>gi|254504440|ref|ZP_05116591.1| Bacterial type II secretion system protein F domain [Labrenzia
alexandrii DFL-11]
gi|222440511|gb|EEE47190.1| Bacterial type II secretion system protein F domain [Labrenzia
alexandrii DFL-11]
Length = 324
Score = 279 bits (715), Expect = 3e-73, Method: Composition-based stats.
Identities = 132/322 (40%), Positives = 204/322 (63%), Gaps = 3/322 (0%)
Query: 7 DLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKD 66
+ + + A +++ I+++V+P L L+ RMK+VA+ER+ LR ++ LQ
Sbjct: 4 ETIASAQFLAAFLAMIAVTGTIFSLVMPLLSRDTLKSRMKNVALERDKLRAKERARLQTS 63
Query: 67 SASSR--LRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVP 124
+R LR + ++NFV +LNLK +L D++ ++LR AG+R + L R+ +P
Sbjct: 64 QGDARMSLRNQPKAKMKNFVDRLNLKEMLADDSTQDRLRMAGYRGSAPIYYFLTARIAIP 123
Query: 125 IIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWP 184
+ + + F P +V I+ +G P++++ N + KR+ I+RAWP
Sbjct: 124 GGLFVFALAYAFLL-APNTIPAFSKVLFCIVFSGLGAFFPNIYLKNQIDKRKLGIQRAWP 182
Query: 185 DALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYN 244
DALDL+LICVESG+SI+ A ++VAE+IG QSV L+EE+ LT AELS+L R++A+EN
Sbjct: 183 DALDLMLICVESGMSIEAAFQKVAEEIGAQSVELAEELSLTTAELSYLSERRMAYENLAK 242
Query: 245 RTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMII 304
RT +D V+N ALIQ++RYGT +G ++R + +TR+ER+ AE+KAASL PKLTVPMI+
Sbjct: 243 RTGVDGVKNVMMALIQAERYGTPVGTAIRNMADDTRAERMQFAEQKAASLPPKLTVPMIM 302
Query: 305 FFLPVLILVIIGPAILSIIDTM 326
FFLPVL VI+ PA++ +
Sbjct: 303 FFLPVLFFVILTPAVIQAMGAF 324
>gi|114798130|ref|YP_761686.1| type II secretion system protein [Hyphomonas neptunium ATCC 15444]
gi|114738304|gb|ABI76429.1| type II secretion system protein [Hyphomonas neptunium ATCC 15444]
Length = 339
Score = 279 bits (715), Expect = 3e-73, Method: Composition-based stats.
Identities = 136/325 (41%), Positives = 197/325 (60%), Gaps = 5/325 (1%)
Query: 5 FFDLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQ 64
F F + A A ++F + +P L +LE R+K+VA +RE LRKQ +L+
Sbjct: 4 FLVSFTKPQTLAAYLVAAAVFGTFMTIFLPYLQGNKLETRLKAVASQREKLRKQSRAALE 63
Query: 65 KDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVP 124
K LR +D + + KLNL L D N+V + AG R ++ R+ +P
Sbjct: 64 KKG----LRRKDDSVVGSISSKLNLAQALEDPNVVKLMNQAGLRGPGPISAFYFARMAMP 119
Query: 125 IIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWP 184
L +IF + F ++ G+VI GF AP+++ISNL QKRQ S+ RA+P
Sbjct: 120 FAGAGLMFFYIFFVNDHGLSQF-MKYGSVIFGAAAGFYAPNLYISNLAQKRQKSLMRAFP 178
Query: 185 DALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYN 244
DALD+LLICVE+G+SI+ +V+++IG S L+EE +T+AELS+LP+R++A+EN
Sbjct: 179 DALDMLLICVEAGMSIEMGFNKVSQEIGSASPELAEEFGITVAELSYLPDRRLAYENLAL 238
Query: 245 RTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMII 304
RT + V+ AL Q++RYGT +GD+LR++ E R R+ EAEKKAASL KLTVPMI+
Sbjct: 239 RTGHEGVKAVCMALGQAERYGTPLGDALRMMAKENREMRMSEAEKKAASLPAKLTVPMIL 298
Query: 305 FFLPVLILVIIGPAILSIIDTMKDH 329
FFLPVL LV++GPA + K++
Sbjct: 299 FFLPVLFLVVLGPAYIQYQAMQKEN 323
>gi|295690793|ref|YP_003594486.1| type II secretion system F domain-containing protein [Caulobacter
segnis ATCC 21756]
gi|295432696|gb|ADG11868.1| Type II secretion system F domain protein [Caulobacter segnis ATCC
21756]
Length = 327
Score = 279 bits (714), Expect = 4e-73, Method: Composition-based stats.
Identities = 137/324 (42%), Positives = 200/324 (61%), Gaps = 3/324 (0%)
Query: 7 DLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSL-QK 65
L D + L A AV +F+ I + P + LE R+KSVA RE LR++ +L Q+
Sbjct: 6 TLTDPSNLLTAFI-AVVVFATIITLASPLMRDNGLEGRLKSVANRREELRRRSREALAQR 64
Query: 66 DSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPI 125
A LR +D + V++L L +L D +V+KL AGFR + R V P
Sbjct: 65 HGAPGTLRHQDEGLYKKVVERLQLSRLLEDPKVVDKLAQAGFRGPRPVTTFYFFRFVAPF 124
Query: 126 IFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPD 185
+F + +++G + P Q ++ A + G+ AP+V+I+N+ QKR+ SI A+PD
Sbjct: 125 VFAAVVAAYLYGVNDFGLLPIQ-KLCACVAALAFGYYAPNVYITNIAQKRRESIVAAFPD 183
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
+LDLLLICVESG+S++ A+++V+ +IG QS+ L+EE+ L AELS+LP R+ A+EN R
Sbjct: 184 SLDLLLICVESGMSVEAAIQKVSSEIGAQSMELAEELSLLTAELSYLPERRQAYENLARR 243
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
T V++ A+IQ++RYGT +G +LRV+ E R RL AEKKA +L KLTVPMI+F
Sbjct: 244 TNHPGVKSVATAMIQAERYGTPLGAALRVMAKENRELRLSSAEKKATALPAKLTVPMILF 303
Query: 306 FLPVLILVIIGPAILSIIDTMKDH 329
FLPVL +VI+GPAI+ + D H
Sbjct: 304 FLPVLFIVILGPAIIKVQDVFAKH 327
>gi|92116008|ref|YP_575737.1| type II secretion system protein [Nitrobacter hamburgensis X14]
gi|91798902|gb|ABE61277.1| type II secretion system protein [Nitrobacter hamburgensis X14]
Length = 325
Score = 279 bits (714), Expect = 4e-73, Method: Composition-based stats.
Identities = 137/327 (41%), Positives = 199/327 (60%), Gaps = 2/327 (0%)
Query: 1 MPHYFFDLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQI 60
M + + + + A++ + +Y ++ P + L KRMK+VA ERE +R+++
Sbjct: 1 MLDFLIEKLHDPQFMTMVLAAIAASATVYTLITPFFAAEGLTKRMKAVASERERIRQRER 60
Query: 61 TSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVR 120
L K S LR + + V+ LNL + E KL AG+R + L R
Sbjct: 61 ERLAKSEKVS-LRQAPKQFVSKVVEDLNLGKWVAQEAAREKLVMAGYRGQAPYVTFLFFR 119
Query: 121 LVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIK 180
+V PI+ LI I+++F ++ +++G I + G AP +++ N + KRQ SIK
Sbjct: 120 MVTPIVMLIGAIVYVFLLSH-MQQSTPIKIGICIGAAFFGLQAPMLFLKNAITKRQISIK 178
Query: 181 RAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFE 240
RA+PDALDLLLIC+ESG+SI+ A R+V+ +IG QSV L+EE LT AELS+L +R+VA+E
Sbjct: 179 RAFPDALDLLLICIESGMSIEVAFRKVSTEIGSQSVALAEEFTLTTAELSYLQDRKVAYE 238
Query: 241 NFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV 300
N RT ++ V++ AL QS+RYGT + SLRV+ E R R+ EAEKKAA+L PKLTV
Sbjct: 239 NLAKRTGVEGVKSVCLALQQSERYGTPLAQSLRVMAQENRDMRMTEAEKKAAALPPKLTV 298
Query: 301 PMIIFFLPVLILVIIGPAILSIIDTMK 327
PMI+FFLPVL +VI+GP + I M
Sbjct: 299 PMIVFFLPVLFVVILGPTGIKIAAQMH 325
>gi|90419769|ref|ZP_01227678.1| putative Flp pilus assembly protein TadC, type II/IV secretion
system [Aurantimonas manganoxydans SI85-9A1]
gi|90335810|gb|EAS49558.1| putative Flp pilus assembly protein TadC, type II/IV secretion
system [Aurantimonas manganoxydans SI85-9A1]
Length = 332
Score = 279 bits (714), Expect = 4e-73, Method: Composition-based stats.
Identities = 148/324 (45%), Positives = 217/324 (66%), Gaps = 3/324 (0%)
Query: 3 HYFFDLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITS 62
F L + +A ++ A+++F+ A+ +P L +L+ RMK+VA+ER+ +R ++
Sbjct: 6 DMFALLGVSPAVAASLVMAIAVFTTFVAIAMPMLAGNQLKSRMKAVALERDEVRARERAR 65
Query: 63 LQ--KDSASSRLRTRDSKSLRNFV-KKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVV 119
+ + S LR +DSK + + V ++LNL+ L D+ V+ LR AG+R + L + L
Sbjct: 66 MAAENERGRSGLRQQDSKGVASLVVERLNLRTALADDKTVSSLRNAGYRGQRPLTLFLFA 125
Query: 120 RLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSI 179
R V+P++ L + ++FG L +P +R+ + + YVGF AP ++ N KR+ SI
Sbjct: 126 RAVLPLLMFALALFYVFGLGLLDTHPTMMRIAICLGVAYVGFVAPIFFVKNRATKRRLSI 185
Query: 180 KRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAF 239
RAWPDALDLLLICVESG SI+ A RRVAE+IG QS+PL+EE++L AELS+LP+R+VA+
Sbjct: 186 SRAWPDALDLLLICVESGNSIEAAFRRVAEEIGIQSIPLAEELVLVCAELSYLPDRKVAY 245
Query: 240 ENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLT 299
+N RT +D VR AL+Q++RYGT +G +LR L E R +R+ AEKKAA+L PKLT
Sbjct: 246 DNLATRTGLDGVRTVCTALVQAERYGTPLGTALRTLSQENRDQRMNLAEKKAAALPPKLT 305
Query: 300 VPMIIFFLPVLILVIIGPAILSII 323
VPMI+FFLPVL VIIGPAI+ ++
Sbjct: 306 VPMIVFFLPVLFAVIIGPAIIKVM 329
>gi|154250694|ref|YP_001411518.1| type II secretion system protein [Parvibaculum lavamentivorans
DS-1]
gi|154154644|gb|ABS61861.1| type II secretion system protein [Parvibaculum lavamentivorans
DS-1]
Length = 322
Score = 279 bits (713), Expect = 6e-73, Method: Composition-based stats.
Identities = 129/313 (41%), Positives = 196/313 (62%), Gaps = 3/313 (0%)
Query: 9 FDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSA 68
+ E V + TAV+ F+ I+ + P L + +L RMK V+ ERE +R + +L ++
Sbjct: 8 MFSIENVVTLLTAVAAFATIFTLTAPLLNTDKLSTRMKYVSTEREAMRARAREALAQEK- 66
Query: 69 SSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFL 128
+RLR ++ V+K +L + + KLR AGFR + + R V+P +
Sbjct: 67 -TRLRHTPKGFIKQVVEKFASGNMLENAAVKEKLRQAGFRGPGPMYTFVFFRFVMPPVLF 125
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
++ ++++ + P R+ +VGF P++++ N++ +RQ SI++A+PDALD
Sbjct: 126 VVTLLYMVFVNDFGLQPMA-RLAVSCAAAFVGFYLPNLFVENVISRRQDSIRKAFPDALD 184
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
L+LICVESG+SI+ A ++VA +IG QSV L+EE+ LT AELS+L R++A+EN RT +
Sbjct: 185 LMLICVESGMSIEAAFQKVAAEIGAQSVELAEELGLTTAELSYLQERRMAYENLARRTGL 244
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP 308
V+ LIQ++RYGT +G +LRV+ E R R+ EAEKKAA L PKLTVPMI+FFLP
Sbjct: 245 PGVKAVATTLIQAERYGTPLGQALRVMAQENRDMRMAEAEKKAAGLPPKLTVPMILFFLP 304
Query: 309 VLILVIIGPAILS 321
VL VI+GPAI+
Sbjct: 305 VLFGVILGPAIIK 317
>gi|304392379|ref|ZP_07374320.1| type II secretion system protein [Ahrensia sp. R2A130]
gi|303295483|gb|EFL89842.1| type II secretion system protein [Ahrensia sp. R2A130]
Length = 328
Score = 278 bits (712), Expect = 7e-73, Method: Composition-based stats.
Identities = 136/328 (41%), Positives = 199/328 (60%), Gaps = 5/328 (1%)
Query: 5 FFDLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQ 64
FD+ + +A+T ++ F+ ++ +P L LE RMKSVA+ER+ LR ++ +Q
Sbjct: 1 MFDIITQPQNLIAMTVTLACFATALSIAMPLLAKDPLEGRMKSVALERDKLRARERAKIQ 60
Query: 65 KDSASSRLRTRDSKSLRN-----FVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVV 119
D + R K+ N V+KLNL+ L DEN L AG+R L I L +
Sbjct: 61 ADKQKAGQRVGAKKAEANSAITGLVEKLNLRTALADENTEAMLVHAGYRGSKPLFIFLAL 120
Query: 120 RLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSI 179
R +P++FL L I++ + E ++ G +GF P + + ++ RQ SI
Sbjct: 121 RFALPLVFLALTAIYLLFLSERTEGDTMTIGIKCLVAGAIGFYLPILVVKQKMKARQLSI 180
Query: 180 KRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAF 239
++WPDALDL LICVESG+SI+ A R+VA +IG QS PL+EE+++T AELSFL R+ A+
Sbjct: 181 SQSWPDALDLSLICVESGMSIEVAFRKVASEIGAQSPPLAEELMITTAELSFLQERKHAY 240
Query: 240 ENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLT 299
+N RT ++ V+N +L+QS++YGT + +LRVL E R R+ AEKKAA LGPKLT
Sbjct: 241 DNLVYRTGLESVKNVVLSLVQSEKYGTPLSVALRVLSQENRDTRMAMAEKKAAGLGPKLT 300
Query: 300 VPMIIFFLPVLILVIIGPAILSIIDTMK 327
VPM+I FLPVL VI+GPA++ + +
Sbjct: 301 VPMMICFLPVLFCVILGPAVIRTMAEFE 328
>gi|75674494|ref|YP_316915.1| type II secretion system protein [Nitrobacter winogradskyi Nb-255]
gi|74419364|gb|ABA03563.1| type II secretion system protein [Nitrobacter winogradskyi Nb-255]
Length = 325
Score = 276 bits (706), Expect = 3e-72, Method: Composition-based stats.
Identities = 137/327 (41%), Positives = 197/327 (60%), Gaps = 2/327 (0%)
Query: 1 MPHYFFDLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQI 60
M + F + + A++ + +Y ++ P + L KRMK+VA ERE +R ++
Sbjct: 1 MLDILIEKFHNPQFMTMVLAAIAASATVYTLITPFFAADGLTKRMKAVASERERIRLRER 60
Query: 61 TSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVR 120
L + S LR + + V+ LNL + E KL AG+R + L R
Sbjct: 61 ERLARTEKVS-LRQAPKQFISKIVEDLNLGKWVAQEAAREKLVMAGYRGQAPYVTFLFFR 119
Query: 121 LVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIK 180
+V PI+ LI I ++F + +++G I + G AP +++ N + KRQ SIK
Sbjct: 120 MVTPIVMLIGAIAYVFLLSH-TQQSTTVKLGICIGATFFGMQAPMLFLHNAITKRQLSIK 178
Query: 181 RAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFE 240
RA+PDALDLLLIC+ESG+SI+ A R+V+ + G QSV L+EE+ LT AELS+L +R+VA+E
Sbjct: 179 RAFPDALDLLLICLESGMSIEVAFRKVSTETGNQSVALAEELTLTTAELSYLQDRKVAYE 238
Query: 241 NFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV 300
N NRT ++ V++ AL QS+RYGT + SLRV+ E R R+ EAEKKAA+L PKLTV
Sbjct: 239 NLANRTGVEGVKSVCLALQQSERYGTPLAQSLRVMAQENRDMRMTEAEKKAAALPPKLTV 298
Query: 301 PMIIFFLPVLILVIIGPAILSIIDTMK 327
PMI+FFLPVL +VI+GP + I M
Sbjct: 299 PMIVFFLPVLFVVILGPTGIKIAAQMH 325
>gi|39936745|ref|NP_949021.1| type II secretion system protein [Rhodopseudomonas palustris
CGA009]
gi|192292571|ref|YP_001993176.1| type II secretion system protein [Rhodopseudomonas palustris TIE-1]
gi|39650601|emb|CAE29124.1| conserved hypothetical protein [Rhodopseudomonas palustris CGA009]
gi|192286320|gb|ACF02701.1| type II secretion system protein [Rhodopseudomonas palustris TIE-1]
Length = 324
Score = 274 bits (702), Expect = 1e-71, Method: Composition-based stats.
Identities = 141/322 (43%), Positives = 198/322 (61%), Gaps = 2/322 (0%)
Query: 1 MPHYFFDLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQI 60
M + + F + A++ + +Y +VIP L KRMK+V ERE LR+++
Sbjct: 1 MLDFLIEKFHDARFMATLLAAIAASATVYTLVIPFFVGETLAKRMKAVGSERERLRQRER 60
Query: 61 TSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVR 120
L K S LR K + V+ NL L E+ +KL AG+R + L R
Sbjct: 61 DRLAKAEKVS-LRQAPKKFVARVVEDFNLAKWLAQESARDKLVMAGYRGQAPYVTFLFFR 119
Query: 121 LVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIK 180
+V+PI F +++F + P +++G + + G AP +++ N +QKRQ SIK
Sbjct: 120 MVMPIAFGAASALYVFVIANF-DQPLTIKIGMCVAAIFFGMQAPMLFLKNAIQKRQLSIK 178
Query: 181 RAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFE 240
RA+PDALDLLLIC+ESG+SI+ A RRV+ +IG QS+PL+EE LT AELS+L +R+ A+E
Sbjct: 179 RAFPDALDLLLICIESGMSIETAFRRVSIEIGSQSIPLAEEFTLTTAELSYLQDRKQAYE 238
Query: 241 NFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV 300
N RT +D V++ AL QS+RYGT +G SLRV+ E R R+ EAEKKAA+L PKLTV
Sbjct: 239 NLALRTGLDGVKSVCLALQQSERYGTPLGQSLRVMAQENRDMRMNEAEKKAAALPPKLTV 298
Query: 301 PMIIFFLPVLILVIIGPAILSI 322
PMI+FFLPVL +VI+GP + I
Sbjct: 299 PMIVFFLPVLFVVILGPTGIRI 320
>gi|304320652|ref|YP_003854295.1| hypothetical protein PB2503_05397 [Parvularcula bermudensis
HTCC2503]
gi|303299554|gb|ADM09153.1| hypothetical protein PB2503_05397 [Parvularcula bermudensis
HTCC2503]
Length = 338
Score = 274 bits (700), Expect = 2e-71, Method: Composition-based stats.
Identities = 125/324 (38%), Positives = 194/324 (59%), Gaps = 2/324 (0%)
Query: 3 HYFFDLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITS 62
F + + +A+ AV +F I +V+P L+KR+K VA +E LR+Q
Sbjct: 2 QEFIEAAVDRQNQIAMLAAVGVFLTIVTLVMPLFADNGLDKRVKKVADYKERLRQQSRAE 61
Query: 63 LQKDSASSRLRTRDSKSL-RNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRL 121
L LR + + + V++L L I +L AG R E + ++ R+
Sbjct: 62 LAGSRKPGSLRNATAGGMGKRLVEQLKLFEIFDAAAARKQLMMAGLRGERPVFTYMLARV 121
Query: 122 VVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKR 181
+ P+ L++ I +++ + + F +R+ I +G+ P++++ NLV KR+ I+
Sbjct: 122 ITPVAALLVAIFYLYVLEVVEVASF-MRLILCIGALALGYYLPNIYVHNLVTKRKQKIQL 180
Query: 182 AWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFEN 241
++PD+LDLLLICVESG+SI+ AL++V E++ L+EE LT AELS+L +R+VA+ N
Sbjct: 181 SFPDSLDLLLICVESGMSIEAALQKVTEEVAASCPELAEEYGLTTAELSYLQDRKVAYHN 240
Query: 242 FYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVP 301
RT ++ V++ T ALIQS+ YGT++G SLRV+ +E R R+ AEKKAA+L PKLTVP
Sbjct: 241 LGERTGLEGVKSVTTALIQSEVYGTALGASLRVMAAENREIRMQNAEKKAAALPPKLTVP 300
Query: 302 MIIFFLPVLILVIIGPAILSIIDT 325
MI+FFLPVL +VI+GP +L T
Sbjct: 301 MILFFLPVLFVVILGPGVLKATST 324
>gi|110632959|ref|YP_673167.1| type II secretion system protein [Mesorhizobium sp. BNC1]
gi|110283943|gb|ABG62002.1| type II secretion system protein [Chelativorans sp. BNC1]
Length = 323
Score = 273 bits (699), Expect = 3e-71, Method: Composition-based stats.
Identities = 135/311 (43%), Positives = 190/311 (61%), Gaps = 1/311 (0%)
Query: 12 TELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSR 71
A+ AV+ FS + V P L L +RM V ERE+LRKQ+ L
Sbjct: 10 PGQLSALMAAVAAFSSVIVVSWPYLFRDNLARRMAKVENERELLRKQERARLAMQKRLPS 69
Query: 72 LRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILG 131
LR+ K + V + L + +V++LR AG+R + L VRL+ PI +
Sbjct: 70 LRSEPRKLFKQIVDRFKLAKQGDNGQLVDRLRRAGYRGNAPVITFLAVRLIAPIAIFAVS 129
Query: 132 IIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLL 191
+ ++ K + P +G +G G+ P+++I N + KRQ +I+RAWP+ALDLLL
Sbjct: 130 LTYVLLILK-PDLPLFAILGIAAALGGFGYFVPALYIRNKITKRQKAIQRAWPEALDLLL 188
Query: 192 ICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCV 251
ICVESG+SI+ A R+VAE+IG QS ++EE+ LT AELSFL +R+ A+EN RT ++ V
Sbjct: 189 ICVESGMSIESAFRKVAEEIGTQSAEIAEEIALTTAELSFLQDRRQAYENLGRRTGVEGV 248
Query: 252 RNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLI 311
R A +LIQ+++YGT +G +LRV+ E R R+ EAEK+AA+L PKLTVPMI+FFLPVL
Sbjct: 249 RAAVTSLIQAEKYGTPLGQALRVMAQENRDMRMSEAEKRAAALPPKLTVPMIVFFLPVLF 308
Query: 312 LVIIGPAILSI 322
VII PA + I
Sbjct: 309 AVIITPAAIQI 319
>gi|188581665|ref|YP_001925110.1| type II secretion system protein [Methylobacterium populi BJ001]
gi|179345163|gb|ACB80575.1| type II secretion system protein [Methylobacterium populi BJ001]
Length = 323
Score = 272 bits (697), Expect = 4e-71, Method: Composition-based stats.
Identities = 139/327 (42%), Positives = 204/327 (62%), Gaps = 4/327 (1%)
Query: 1 MPHYFFDLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQI 60
M F + A A+ T ++ + ++ +V P L +L KRMK V+ ERE +R+++
Sbjct: 1 MLDEFVAIALAPRTVAAVLTGIAAAATVFTLVQPLLEGDQLAKRMKLVSDEREQIRQRER 60
Query: 61 TSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVR 120
L + + LR ++ V++ NL L E KL AG+R + L R
Sbjct: 61 ERLN---SRASLRVEPKAYMKRVVEQFNLSRWLGTETAKAKLVRAGYRGGGAETAFLFFR 117
Query: 121 LVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIK 180
LV+PI + + ++F + +L+ P +R G V+ G+ GF P V++SN+ KRQ+ I+
Sbjct: 118 LVMPIAVTAVALFYLFLLE-VLDQPLMVRAGLVLAAGFFGFKLPEVYLSNMTTKRQAEIR 176
Query: 181 RAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFE 240
RAWPDALDL LICVESG+S++ A RRV+ +I QS L+EE+ L AELSFLP R+VA+E
Sbjct: 177 RAWPDALDLCLICVESGMSVENAFRRVSLEIASQSTVLAEELALLTAELSFLPERRVAYE 236
Query: 241 NFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV 300
N RT ++ V++ T AL+Q++RYGT +G +LRVL E+R R+ EAEKKAA+L PKLTV
Sbjct: 237 NLALRTGLESVKSLTTALMQAERYGTPVGQALRVLAQESRDFRMTEAEKKAAALPPKLTV 296
Query: 301 PMIIFFLPVLILVIIGPAILSIIDTMK 327
PMI+FFLPVL +V++ PA + M+
Sbjct: 297 PMILFFLPVLFVVLLTPAGIQAYALMQ 323
>gi|115525754|ref|YP_782665.1| type II secretion system protein [Rhodopseudomonas palustris
BisA53]
gi|115519701|gb|ABJ07685.1| type II secretion system protein [Rhodopseudomonas palustris
BisA53]
Length = 324
Score = 272 bits (697), Expect = 4e-71, Method: Composition-based stats.
Identities = 141/322 (43%), Positives = 203/322 (63%), Gaps = 2/322 (0%)
Query: 1 MPHYFFDLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQI 60
M + D F + + A++ + +Y ++ P + L KRMK+VA ERE +R+++
Sbjct: 1 MFNLLIDKFHDPRFMMMLFAAIAASATVYTLITPLFANEGLNKRMKTVASERERIRQRER 60
Query: 61 TSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVR 120
L K S LR + + V+ NL + EN KL AG+R + L R
Sbjct: 61 DRLAKTERVS-LRQSPKRLVAKVVEDFNLGKWVAQENARQKLLMAGYRGQAPYVTFLFFR 119
Query: 121 LVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIK 180
+V P+IFL+ +++F K + P L++ I ++G AP ++++N + KRQ SIK
Sbjct: 120 MVTPLIFLVATALYVFLVAK-MNQPTALKIAICIAATFLGMQAPMLFLTNAISKRQLSIK 178
Query: 181 RAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFE 240
RA+PDALDLLLICVESG+SI+ A R+V+ +IG QS+PL+EE LT AELS+L +R+VA+E
Sbjct: 179 RAFPDALDLLLICVESGMSIEVAFRKVSVEIGTQSIPLAEEFTLTTAELSYLQDRKVAYE 238
Query: 241 NFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV 300
N RT ++ V++ AL QS+RYGT +G SLRV+ E R R+ EAEKKAA+L PKLTV
Sbjct: 239 NLAKRTGLEGVKSVCLALQQSERYGTPLGQSLRVMAQENRDMRMNEAEKKAAALPPKLTV 298
Query: 301 PMIIFFLPVLILVIIGPAILSI 322
PMI+FFLPVL +VI+GP + I
Sbjct: 299 PMILFFLPVLFVVILGPTGIRI 320
>gi|27376545|ref|NP_768074.1| pilus assemble protein [Bradyrhizobium japonicum USDA 110]
gi|27349686|dbj|BAC46699.1| pilus assemble protein [Bradyrhizobium japonicum USDA 110]
Length = 324
Score = 272 bits (697), Expect = 4e-71, Method: Composition-based stats.
Identities = 137/325 (42%), Positives = 198/325 (60%), Gaps = 2/325 (0%)
Query: 1 MPHYFFDLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQI 60
M + + A++ + +Y +V+P L KRMK+VA ERE +R+++
Sbjct: 1 MVEFLVSKLHDVRFMTMLLAAIAASATVYTLVMPLFAGEGLSKRMKAVASERERIRQRER 60
Query: 61 TSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVR 120
L K S LR + + V+ NL L E +KL AG+R + L R
Sbjct: 61 ERLNKSEKVS-LRQTPKQLVSKVVEDFNLTKWLAQEAARDKLIMAGYRGQAPYITFLFAR 119
Query: 121 LVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIK 180
+V PI + ++++F +E P +++G I Y+G AP +++ N + KRQ SIK
Sbjct: 120 MVAPITLFVGSVLYVFLIAH-MEKPVPVKIGICIGAAYLGLQAPMLFLKNAISKRQLSIK 178
Query: 181 RAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFE 240
RA+PDALDLLLIC+ESG+S++ A R+VA +I GQS+ LSEE LT AELS+L +R+VA+E
Sbjct: 179 RAFPDALDLLLICIESGMSVEMAFRKVATEIVGQSIALSEEFTLTTAELSYLQDRKVAYE 238
Query: 241 NFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV 300
N RT ++ V++ AL Q++RYGT +G SLRV+ E R R+ EAEKKAA+L PKLTV
Sbjct: 239 NLARRTGLEGVKSVCLALQQAERYGTPLGHSLRVMAQENRDMRMTEAEKKAAALPPKLTV 298
Query: 301 PMIIFFLPVLILVIIGPAILSIIDT 325
PMI+FFLPVL +VI+GP + I +
Sbjct: 299 PMILFFLPVLFVVILGPTGIKISEM 323
>gi|86748902|ref|YP_485398.1| type II secretion system protein [Rhodopseudomonas palustris HaA2]
gi|86571930|gb|ABD06487.1| type II secretion system protein [Rhodopseudomonas palustris HaA2]
Length = 324
Score = 272 bits (695), Expect = 6e-71, Method: Composition-based stats.
Identities = 136/322 (42%), Positives = 199/322 (61%), Gaps = 2/322 (0%)
Query: 1 MPHYFFDLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQI 60
M + F + A+++ + +Y +V+P L L KRMK+V ERE LR+++
Sbjct: 1 MIDLLIEKFHDARFMTMLLAAIAVSATVYTLVMPLLVGETLAKRMKAVGSERERLRQRER 60
Query: 61 TSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVR 120
L K S LR + + V LNL + E+ +KL AG+R + L R
Sbjct: 61 DRLAKAERVS-LRQAPKQFVAKIVDDLNLGKWVAQESARDKLVMAGYRGQAPYITFLFFR 119
Query: 121 LVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIK 180
+V+PI F + +++F ++ ++V I ++G AP +++ N + KRQ SI+
Sbjct: 120 MVMPIAFGLAAALYVFVLSN-MDQSTPIKVAICIGCVFLGMQAPMLFLKNAITKRQLSIR 178
Query: 181 RAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFE 240
RA+PDALDLLLIC+ESG+SI+ A R+VA +IG QS+PL+EE LT AELS+LP+R+ A+E
Sbjct: 179 RAFPDALDLLLICIESGMSIEAAFRKVAVEIGTQSIPLAEEFTLTTAELSYLPDRKQAYE 238
Query: 241 NFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV 300
N RT +D V++ AL QS+RYGT + S+RV+ E R R+ EAEKKAA+L PKLTV
Sbjct: 239 NLAKRTGLDGVKSVCLALQQSERYGTPLSQSIRVMAQENRDMRMNEAEKKAAALPPKLTV 298
Query: 301 PMIIFFLPVLILVIIGPAILSI 322
PMI+FFLPVL +VI+GP + +
Sbjct: 299 PMILFFLPVLFVVILGPTGIRV 320
>gi|85707698|ref|ZP_01038764.1| hypothetical protein NAP1_00645 [Erythrobacter sp. NAP1]
gi|85689232|gb|EAQ29235.1| hypothetical protein NAP1_00645 [Erythrobacter sp. NAP1]
Length = 333
Score = 272 bits (695), Expect = 6e-71, Method: Composition-based stats.
Identities = 107/313 (34%), Positives = 183/313 (58%)
Query: 14 LAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLR 73
L + ++ F++I A+ + KR+KS+ R+ L+ +TS K AS +
Sbjct: 17 LVGTLLAGLAAFAVIMAIYAAITIKDPMAKRVKSLNERRDELKAGIVTSGTKKRASLVRK 76
Query: 74 TRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGII 133
+ + +++ + K+N+ + + KL AG+R++ I++ +R V+P++F I+G
Sbjct: 77 SDTTDKVKDSLGKMNVLEQSQLQAVQQKLAHAGYRNKELAVIVIGLRAVLPVVFGIVGFF 136
Query: 134 WIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLIC 193
I+ ++ + A+ ++G+ P +++ N KR I++ PDALDLL+IC
Sbjct: 137 AIYYFNVFDIKSDFYKFLAMAGCLFLGYKGPELFLKNKADKRTKEIQKGLPDALDLLVIC 196
Query: 194 VESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRN 253
E+G+++D A RVA+++G L +E LT ELSFL R++AF N R ++ V+
Sbjct: 197 AEAGLTVDAAFNRVAKELGRAYPELGDEFALTAIELSFLNERKMAFNNLAYRVDLEAVKG 256
Query: 254 ATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILV 313
+IQ++RYGT + +LRVL +E R+ER+M AE+KAA L +TVP+I+F LPVL +V
Sbjct: 257 VVTTMIQTERYGTPLASALRVLSAEFRNERMMRAEEKAARLPAIMTVPLILFILPVLFIV 316
Query: 314 IIGPAILSIIDTM 326
I+GPA +I DT+
Sbjct: 317 ILGPAACAITDTL 329
>gi|254293219|ref|YP_003059242.1| type II secretion system protein [Hirschia baltica ATCC 49814]
gi|254041750|gb|ACT58545.1| type II secretion system protein [Hirschia baltica ATCC 49814]
Length = 333
Score = 271 bits (694), Expect = 8e-71, Method: Composition-based stats.
Identities = 124/318 (38%), Positives = 197/318 (61%), Gaps = 5/318 (1%)
Query: 5 FFDLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQ 64
+ F A+ ++ F+ I + P+L +LE R+KSV+ RE LR++ L+
Sbjct: 1 MIESFTDPGFLAALLAGLASFATILTIAAPALKGNKLETRLKSVSNRREELRRKSREQLK 60
Query: 65 KDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVP 124
S LR +D +RN V KL+L+++L D+N+ L AG R ++ R +P
Sbjct: 61 DKS----LRRKDEGMMRNVVDKLDLQSLLRDDNLEKALVQAGLRGPRPVSAFYFARFALP 116
Query: 125 IIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWP 184
+ +L +++ + + FQL++ AV+ GF AP+++++N KR++SI +A+P
Sbjct: 117 FLLGLLTFLYLHFVNDF-DLNFQLQMCAVMFGAAAGFYAPNMYLTNRADKRKASIMKAFP 175
Query: 185 DALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYN 244
D+LD++LICVESG+SI+ A +V E++G SV L+EE+ LT AELS+L R+ A+ N +
Sbjct: 176 DSLDMMLICVESGMSIESAFAKVGEEVGTASVELAEELGLTTAELSYLQERRQAYVNLAD 235
Query: 245 RTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMII 304
RT +++ AL+Q+++YGT +G +LR + E R R++EAEKKAA+L KLTVPMI+
Sbjct: 236 RTNHPGIKSVATALVQAEKYGTPMGTALRTMAKENREIRVLEAEKKAAALPAKLTVPMIV 295
Query: 305 FFLPVLILVIIGPAILSI 322
FFLPVL +VI PA + I
Sbjct: 296 FFLPVLFIVIGTPAYIQI 313
>gi|302381751|ref|YP_003817574.1| type II secretion system F domain protein [Brevundimonas
subvibrioides ATCC 15264]
gi|302192379|gb|ADK99950.1| Type II secretion system F domain protein [Brevundimonas
subvibrioides ATCC 15264]
Length = 333
Score = 271 bits (693), Expect = 1e-70, Method: Composition-based stats.
Identities = 123/316 (38%), Positives = 193/316 (61%), Gaps = 3/316 (0%)
Query: 12 TELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSR 71
++I + +F+ + ++ G L+KRM++V+V R+ L+++ ++
Sbjct: 7 PRTLISIVVGLLVFATMLTLLSSMGGGVSLDKRMQAVSVRRDELKRRSRQAIANGQGG-- 64
Query: 72 LRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILG 131
LR D + V +LNL +L D + ++ AG R L R P IF+
Sbjct: 65 LRHTDDGFKKRVVDRLNLVKLLEDPKVAEQMIQAGLRGPRPLTTFYFFRFATPFIFMFAA 124
Query: 132 IIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLL 191
++++F + +R+G V+ GF P++++ N + KRQ SI +A+PDALDLLL
Sbjct: 125 VLYVFVMNDFG-LSVTVRLGIVMFATVAGFYGPNIFLKNRIAKRQLSIMQAFPDALDLLL 183
Query: 192 ICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCV 251
ICVE+G+SI+ A+ +V+++IG SV L+EE+ L AELS+LP R++A+E RT V
Sbjct: 184 ICVEAGMSIEAAIVKVSQEIGTTSVELAEELALLSAELSYLPERRMAYEGLAKRTNHPGV 243
Query: 252 RNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLI 311
R+ + A+IQ+++YGT +G +LR + E R RL AEKKAA+L +LTVPMIIFFLPVL
Sbjct: 244 RSVSTAMIQAEQYGTPLGSALRTMAKENRDLRLSAAEKKAAALPAQLTVPMIIFFLPVLF 303
Query: 312 LVIIGPAILSIIDTMK 327
+VI+GPAI++I DT+K
Sbjct: 304 VVILGPAIINIQDTLK 319
>gi|170740616|ref|YP_001769271.1| type II secretion system protein [Methylobacterium sp. 4-46]
gi|168194890|gb|ACA16837.1| type II secretion system protein [Methylobacterium sp. 4-46]
Length = 321
Score = 270 bits (692), Expect = 1e-70, Method: Composition-based stats.
Identities = 130/292 (44%), Positives = 189/292 (64%), Gaps = 4/292 (1%)
Query: 34 PSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAIL 93
P L L +RMKSV ER+ +R ++ L + LR + ++ V++ L L
Sbjct: 33 PFLEPNRLAQRMKSVGEERDRIRLRERDRLNQRGN---LRQQPKAYMKRVVERFKLDNWL 89
Query: 94 VDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAV 153
E+ N+L AG+R + L RLV+P+ FL+L + ++F ++L PF +R+ V
Sbjct: 90 ATEDAKNRLMMAGYRGPQAETAFLFFRLVMPLGFLVLAVFYLFVL-QVLNQPFSIRLLIV 148
Query: 154 ILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGG 213
I Y G AP +++ N KRQ+ I++ WPDALDLLLICVESG++I+ A RRV ++
Sbjct: 149 IAATYGGVKAPEIFLKNQTDKRQAQIRKNWPDALDLLLICVESGMAIELAFRRVGVEMAN 208
Query: 214 QSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLR 273
QS+ L+EE+ LT AELS+L +R+VA++N RT +D V+ ALIQ++RYGT IG +LR
Sbjct: 209 QSIVLAEELALTTAELSYLTDRRVAYDNLAIRTGLDSVKAVCTALIQAERYGTPIGQALR 268
Query: 274 VLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDT 325
VL E+R +R+ EAEKKAA+L PKLTVPMI+FFLPVL +VI+ PA++ +
Sbjct: 269 VLAQESRDQRMNEAEKKAAALPPKLTVPMILFFLPVLFVVILTPAMVQVFAA 320
>gi|296444390|ref|ZP_06886355.1| Type II secretion system F domain protein [Methylosinus
trichosporium OB3b]
gi|296258037|gb|EFH05099.1| Type II secretion system F domain protein [Methylosinus
trichosporium OB3b]
Length = 329
Score = 269 bits (689), Expect = 3e-70, Method: Composition-based stats.
Identities = 131/327 (40%), Positives = 202/327 (61%), Gaps = 4/327 (1%)
Query: 1 MPHYFFDLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQI 60
M F L ++ AV++ + + ++ + G L KRMKSVA ERE +R ++
Sbjct: 1 MFDTFVQYASNGRLMFSLMIAVAVVATVISIGLTFSGGDRLAKRMKSVASERERIRARER 60
Query: 61 TSLQKD---SASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILL 117
+ S LR + ++N V + +L L + +L +AG+R + L
Sbjct: 61 AAANAKAKESGPKGLRQQPKVYMKNIVDRFSLDTWLNTGDAKMRLASAGYRGPQAEIAFL 120
Query: 118 VVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQS 177
RLV PI F++ GI + D ++ +++G VI YVG +P ++++N + KRQ
Sbjct: 121 FFRLVTPIAFVLFGIFYFTVVDD-SDWSLLVKIGVVIFAAYVGVKSPELFLTNAITKRQQ 179
Query: 178 SIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQV 237
S++ A+PDALDL+LICVESG+SI+ A R+V ++IG +SVPL+EE L AELS+LP+R+
Sbjct: 180 SMRIAFPDALDLMLICVESGLSIEHAFRKVGKEIGVRSVPLAEEFALATAELSYLPDRRQ 239
Query: 238 AFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPK 297
AF N RT +DCV+ LIQ+++YGT +G +LRV E+R R+ EAE++AA+L PK
Sbjct: 240 AFHNLAARTGLDCVKQICTVLIQAEKYGTPLGRALRVTAQESRDMRMAEAERQAAALPPK 299
Query: 298 LTVPMIIFFLPVLILVIIGPAILSIID 324
LTVPMI+FFLPVL++V++ PAI+ ++
Sbjct: 300 LTVPMIVFFLPVLMVVVMAPAIIQVMS 326
>gi|209886535|ref|YP_002290392.1| type II secretion system protein [Oligotropha carboxidovorans OM5]
gi|209874731|gb|ACI94527.1| type II secretion system protein [Oligotropha carboxidovorans OM5]
Length = 325
Score = 268 bits (685), Expect = 8e-70, Method: Composition-based stats.
Identities = 142/327 (43%), Positives = 205/327 (62%), Gaps = 2/327 (0%)
Query: 1 MPHYFFDLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQI 60
M D T+ A++ + YA++ P L +RMK+VA ERE +R+++
Sbjct: 1 MLDLLIDKLHDTQFLTMTFAAIAASATAYALISPMFAGDGLARRMKAVASERERMRQRER 60
Query: 61 TSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVR 120
+ ++ + LR + ++ V++ NL L E KL AG+R L R
Sbjct: 61 ERMNRNEKVT-LRQSPKQVVQRVVERFNLGKWLAQEEAKEKLIMAGYRGHAPYVTFLFFR 119
Query: 121 LVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIK 180
LV P++FLI ++IF LE +++G IL ++G AP +++ N + KRQ SIK
Sbjct: 120 LVAPVVFLIATALYIFVILN-LEQTMTIKIGICILAAWLGMQAPMLFLKNAISKRQLSIK 178
Query: 181 RAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFE 240
RA+PDALDLLLICVESG+SI+ A R+V+ +IG QSVPL+EE+ LT AELS+L +R++A+E
Sbjct: 179 RAFPDALDLLLICVESGMSIEAAFRKVSVEIGSQSVPLAEELTLTTAELSYLQDRKMAYE 238
Query: 241 NFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV 300
N RT ++ V++ AL+QS+RYGT +G +LRV+ E R R+ EAEKKAASL PKLTV
Sbjct: 239 NLQKRTGLEGVKSVCMALMQSERYGTPLGQTLRVMAQENRDMRMNEAEKKAASLPPKLTV 298
Query: 301 PMIIFFLPVLILVIIGPAILSIIDTMK 327
PMI+FFLPVL +VI+GP + + MK
Sbjct: 299 PMIVFFLPVLFVVILGPTWIKVAAYMK 325
>gi|91977990|ref|YP_570649.1| type II secretion system protein [Rhodopseudomonas palustris BisB5]
gi|91684446|gb|ABE40748.1| type II secretion system protein [Rhodopseudomonas palustris BisB5]
Length = 324
Score = 268 bits (685), Expect = 1e-69, Method: Composition-based stats.
Identities = 134/322 (41%), Positives = 197/322 (61%), Gaps = 2/322 (0%)
Query: 1 MPHYFFDLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQI 60
M + A++ + +Y +VIP L KRMK+V ERE +R+++
Sbjct: 1 MIDFLVAKLHDARFMTMFLAAIAASATVYTLVIPLFVGETLAKRMKAVGSERERIRQRER 60
Query: 61 TSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVR 120
+ K S LR + + V+ LNL + E +KL AG+R + L R
Sbjct: 61 DRIAKAERVS-LRQAPKQFVAKVVEDLNLGKWVAQETARDKLVMAGYRGQAPYVTFLFFR 119
Query: 121 LVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIK 180
+V+PI F I +++F ++ +++G I ++G AP +++ N + KRQ SIK
Sbjct: 120 MVMPIAFGIASALYVFLLSN-MQQSTSIKIGMCIAGVFLGMQAPMLFLKNAISKRQLSIK 178
Query: 181 RAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFE 240
RA+PDALDLLLIC+ESG+SI+ A R+V+ +IG QS+PL+EE+ LT AELS+LP+R+ A+E
Sbjct: 179 RAFPDALDLLLICIESGMSIEAAFRKVSIEIGTQSIPLAEELTLTTAELSYLPDRKQAYE 238
Query: 241 NFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV 300
N RT ++ V++ AL QS+RYGT + SLRV+ E R R+ EAEKKAA+L PKLTV
Sbjct: 239 NLAIRTGLEGVKSVCLALQQSERYGTPLSQSLRVMAQENRDMRMNEAEKKAAALPPKLTV 298
Query: 301 PMIIFFLPVLILVIIGPAILSI 322
PMI+FFLPVL +VI+GP + +
Sbjct: 299 PMIVFFLPVLFVVILGPTGIRV 320
>gi|163851908|ref|YP_001639951.1| type II secretion system protein [Methylobacterium extorquens PA1]
gi|218530659|ref|YP_002421475.1| type II secretion system protein [Methylobacterium chloromethanicum
CM4]
gi|240139031|ref|YP_002963506.1| hypothetical protein MexAM1_META1p2450 [Methylobacterium extorquens
AM1]
gi|254561626|ref|YP_003068721.1| hypothetical protein METDI3213 [Methylobacterium extorquens DM4]
gi|163663513|gb|ABY30880.1| type II secretion system protein [Methylobacterium extorquens PA1]
gi|218522962|gb|ACK83547.1| type II secretion system protein [Methylobacterium chloromethanicum
CM4]
gi|240009003|gb|ACS40229.1| conserved hypothetical protein; putative membrane protein
[Methylobacterium extorquens AM1]
gi|254268904|emb|CAX24865.1| conserved hypothetical protein; putative membrane protein
[Methylobacterium extorquens DM4]
Length = 323
Score = 267 bits (683), Expect = 2e-69, Method: Composition-based stats.
Identities = 133/294 (45%), Positives = 191/294 (64%), Gaps = 4/294 (1%)
Query: 34 PSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAIL 93
P + L KRMK V+ ERE +R+++ L + + LR ++ V++ NL L
Sbjct: 34 PLIEGDPLAKRMKLVSDEREQIRQRERERLN---SRTTLRAEPKAYMKRVVEQFNLGRWL 90
Query: 94 VDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAV 153
E KL AG+R + L RLV+PI + + ++F + +L+ PF +R+G V
Sbjct: 91 GTETAKAKLIRAGYRGAGAETAFLFFRLVMPITLTAVALFYLFVLE-VLDQPFVIRLGLV 149
Query: 154 ILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGG 213
G+ G P V++SN+ KRQ+ I+RAWPDALDL LICVESG+S++ A RRV+ ++
Sbjct: 150 FAAGFFGLKLPEVYLSNITSKRQAEIRRAWPDALDLCLICVESGMSVENAFRRVSLEVAS 209
Query: 214 QSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLR 273
QS L+EE+ L AELSFLP R+VA+EN RT ++ V++ T AL+Q++RYGT +G +LR
Sbjct: 210 QSAVLAEELALLTAELSFLPERRVAYENLALRTGLEIVKSLTTALMQAERYGTPVGQALR 269
Query: 274 VLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
VL E+R R+ EAEKKAASL PKLTVPMI+FFLPVL +V++ PA + + + MK
Sbjct: 270 VLAQESRDYRMTEAEKKAASLPPKLTVPMILFFLPVLFVVLLTPAGIQVYEAMK 323
>gi|90425202|ref|YP_533572.1| type II secretion system protein [Rhodopseudomonas palustris
BisB18]
gi|90107216|gb|ABD89253.1| type II secretion system protein [Rhodopseudomonas palustris
BisB18]
Length = 324
Score = 265 bits (677), Expect = 8e-69, Method: Composition-based stats.
Identities = 137/322 (42%), Positives = 198/322 (61%), Gaps = 2/322 (0%)
Query: 1 MPHYFFDLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQI 60
M + F + A++ + Y ++ P L KRMK+VA ERE +R+++
Sbjct: 1 MFEFIIAKFHDVRFMTMLLAAIAASATAYTLITPLFAGESLSKRMKAVASERERIRQRER 60
Query: 61 TSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVR 120
L K S LR + + V+ NL + E +KL AG+R L R
Sbjct: 61 DRLSKTERVS-LRQAPKQFVSKVVEDFNLGKWVAQEAARDKLVMAGYRGHAPYVTFLFFR 119
Query: 121 LVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIK 180
+V+PI F++ ++IF ++ P +++ I ++G AP ++++N + KRQ SIK
Sbjct: 120 MVMPIAFMLATALYIFVISH-MQQPLGIKIAICIAACFLGMQAPMLFLTNAISKRQLSIK 178
Query: 181 RAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFE 240
RA+PDALDLLLICVESG+SI+ A R+VA +IG QS+PL+EE LT AELS+L +R+VA+E
Sbjct: 179 RAFPDALDLLLICVESGMSIETAFRKVAIEIGSQSIPLAEEFTLTTAELSYLQDRKVAYE 238
Query: 241 NFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV 300
N RT ++ V++ AL QS+RYGT +G SLRV+ E R R+ EAEKKAA+L PKLTV
Sbjct: 239 NLAKRTGLEGVKSVCLALQQSERYGTPLGQSLRVMAQENRDMRMNEAEKKAAALPPKLTV 298
Query: 301 PMIIFFLPVLILVIIGPAILSI 322
PMI+FFLPVL +VI+GP + +
Sbjct: 299 PMILFFLPVLFVVILGPTGIKV 320
>gi|296284556|ref|ZP_06862554.1| hypothetical protein CbatJ_13056 [Citromicrobium bathyomarinum
JL354]
Length = 342
Score = 264 bits (676), Expect = 1e-68, Method: Composition-based stats.
Identities = 102/312 (32%), Positives = 177/312 (56%)
Query: 17 AITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRD 76
+ ++ +++ A+ + KR+K++ R+ L+ + + S RT+
Sbjct: 31 TVLAGIAAMAVMLAIYAAVTVRDPMAKRIKALNERRDELKAGIVRETARKRKSLVRRTQK 90
Query: 77 SKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIF 136
+ +++ + + E + KL AG R++ ++ R V+PI+ ++ +
Sbjct: 91 TDKVKDTLANFKVLQQSQLEVVQQKLAHAGIRNKEYAVYVIGARAVLPIVLGLIAFYLFY 150
Query: 137 GYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVES 196
D ++ R+GA+ + ++G+ P ++I+N +KR +I++ PDALDLL+IC E+
Sbjct: 151 VSDMFADWGSFKRLGALSIAVFIGYKGPELYIANKAKKRTDAIRKGLPDALDLLVICAEA 210
Query: 197 GISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQ 256
G++ID A RVA+++G L +E LLT ELSFL NR++AF+N R ++ V+
Sbjct: 211 GLTIDSAFTRVAKELGRAYPELGDEFLLTSIELSFLNNRKMAFDNLAYRVDLEAVQGVVT 270
Query: 257 ALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIG 316
+IQ++RYGT + +LRVL +E R+ER+M AE+KAA L +TVP+I+F LP L +VI+G
Sbjct: 271 TMIQTERYGTPLASALRVLSAEFRNERMMRAEEKAARLPAIMTVPLILFILPTLFIVILG 330
Query: 317 PAILSIIDTMKD 328
PA SI D
Sbjct: 331 PAGCSIADAFSG 342
>gi|323137430|ref|ZP_08072508.1| Type II secretion system F domain [Methylocystis sp. ATCC 49242]
gi|322397417|gb|EFX99940.1| Type II secretion system F domain [Methylocystis sp. ATCC 49242]
Length = 323
Score = 264 bits (674), Expect = 2e-68, Method: Composition-based stats.
Identities = 130/320 (40%), Positives = 202/320 (63%), Gaps = 3/320 (0%)
Query: 6 FDLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQK 65
+ V+I TA+++ + I + +P L + L +RMKSV+ ERE +R+++ +
Sbjct: 5 IEKLADGRFIVSILTAIAVIATILTIAMPLLNTDTLSRRMKSVSSERERIRQRERALAKT 64
Query: 66 DSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPI 125
+ LR ++N V + +L L ++ KL +AGFR + L RLV PI
Sbjct: 65 QGKA--LRQEPKFYMKNVVDRFSLSKWLNTDDAKLKLASAGFRGPQAEVAFLFFRLVTPI 122
Query: 126 IFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPD 185
FL + +++ D + L+ VI Y+G AP ++ISN + RQ+S++RA+PD
Sbjct: 123 AFLFFALFYLYFLDD-SDMSSLLKTMIVIGATYLGVKAPELFISNTITNRQTSMRRAFPD 181
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
ALDL+LICVESG+SI+ A R+V +IG QS+PL+EE L AELS+LP+R+ A+ N R
Sbjct: 182 ALDLMLICVESGMSIEHAFRKVGSEIGVQSIPLAEEFALATAELSYLPDRRTAYLNLAAR 241
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
T ++ V+ + LIQ+++YGT +G +LR+ E+R R+MEAEKKAA+L PKLTVPMI+F
Sbjct: 242 TGLESVKQISTVLIQAEKYGTPLGQALRITAQESRDMRMMEAEKKAAALPPKLTVPMIVF 301
Query: 306 FLPVLILVIIGPAILSIIDT 325
FLPVL++V++ PA + ++ +
Sbjct: 302 FLPVLMVVVLSPAAIQVMQS 321
>gi|87199097|ref|YP_496354.1| type II secretion system protein [Novosphingobium aromaticivorans
DSM 12444]
gi|87134778|gb|ABD25520.1| type II secretion system protein [Novosphingobium aromaticivorans
DSM 12444]
Length = 335
Score = 263 bits (673), Expect = 2e-68, Method: Composition-based stats.
Identities = 108/320 (33%), Positives = 175/320 (54%)
Query: 10 DATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSAS 69
+I A++ F+++ A+ + KR+K++ RE L+ +T+ + S
Sbjct: 13 FDVYFVGSILVAIAAFAVMLAIYAAVTVRDPMAKRVKALNERREQLKSGIVTANARKRTS 72
Query: 70 SRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLI 129
R + + +R F++ L + I KL AG R + +++ RLV PI +
Sbjct: 73 IVRRNQTTDQIRGFLESLKVLQDSQLAVIQQKLAQAGIRKKEWAVAVILGRLVGPIALGL 132
Query: 130 LGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDL 189
G + + ++ R + G+ P ++I NLV KR ++++ PDALDL
Sbjct: 133 FGAAVFYWSNTFPDWSPFKRFLGFAVCLIAGYKGPDLFIQNLVSKRTVAVRKGLPDALDL 192
Query: 190 LLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMD 249
L+IC E+G+++D A RVA ++G L +E LT ELSFL R+ AFEN R +D
Sbjct: 193 LVICAEAGLTVDAAFSRVARELGRAYPELGDEFALTAIELSFLTERRHAFENLAYRVDLD 252
Query: 250 CVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPV 309
V+ +IQ++RYGT + +LRVL +E R+ER+M AE+KAA L +T+P+I+F LPV
Sbjct: 253 SVKGVVTTMIQTERYGTPLASALRVLSAEFRNERMMRAEEKAARLPAIMTIPLILFILPV 312
Query: 310 LILVIIGPAILSIIDTMKDH 329
L +VI+GPA SI D++ +
Sbjct: 313 LFIVILGPAACSISDSLVNK 332
>gi|316933034|ref|YP_004108016.1| Type II secretion system F domain [Rhodopseudomonas palustris DX-1]
gi|315600748|gb|ADU43283.1| Type II secretion system F domain [Rhodopseudomonas palustris DX-1]
Length = 324
Score = 263 bits (672), Expect = 3e-68, Method: Composition-based stats.
Identities = 142/322 (44%), Positives = 201/322 (62%), Gaps = 2/322 (0%)
Query: 1 MPHYFFDLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQI 60
M + + F T + A++ + Y +V P + L KRMK+V ERE +R+++
Sbjct: 1 MVDFLIEKFHDTRFMATLLAAIAAAATAYTLVTPFIVGDTLAKRMKAVGSERERIRQRER 60
Query: 61 TSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVR 120
L K S LR K + V+ NL L E+ +KL AG+R + L R
Sbjct: 61 DRLAKAEKVS-LRQAPKKFVARVVEDFNLAKWLAQESARDKLVMAGYRGQAPYITFLFFR 119
Query: 121 LVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIK 180
LV+P++F + ++IF L+ P +++G I + G AP +++ N +QKRQ SIK
Sbjct: 120 LVMPVVFGLASALYIFVITD-LQQPLTVKIGICIAAIFFGMQAPMLFLKNAIQKRQLSIK 178
Query: 181 RAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFE 240
RA+PDALDLLLIC+ESG+SI+ A RRV+ +IG QS+PL+EE LT AELS+L +R+ A+E
Sbjct: 179 RAFPDALDLLLICIESGMSIEAAFRRVSIEIGSQSIPLAEEFTLTTAELSYLQDRKQAYE 238
Query: 241 NFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV 300
N RT +D V++ AL QS+RYGT +G SLRV+ E R R+ EAEKKAA+L PKLTV
Sbjct: 239 NLAQRTGLDGVKSVCLALQQSERYGTPLGQSLRVMAQENRDMRMNEAEKKAAALPPKLTV 298
Query: 301 PMIIFFLPVLILVIIGPAILSI 322
PMI+FFLPVL +VI+GP + +
Sbjct: 299 PMIVFFLPVLFVVILGPTGIRL 320
>gi|329890992|ref|ZP_08269335.1| bacterial type II secretion system protein F domain protein
[Brevundimonas diminuta ATCC 11568]
gi|328846293|gb|EGF95857.1| bacterial type II secretion system protein F domain protein
[Brevundimonas diminuta ATCC 11568]
Length = 330
Score = 263 bits (672), Expect = 3e-68, Method: Composition-based stats.
Identities = 133/327 (40%), Positives = 205/327 (62%), Gaps = 4/327 (1%)
Query: 5 FFDLFDATELAVAITTAVSIFSLIYAVVIPSLGSG-ELEKRMKSVAVEREILRKQQITSL 63
F + ++I V++F+ + ++ +G G L+KRMK+VA RE LR++ ++
Sbjct: 4 FMRFITDPQNLLSIGVGVAVFASVLTLLSSFVGGGARLDKRMKAVAERREELRRRSRQAM 63
Query: 64 QKDSAS--SRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRL 121
+ + + S LR D V +LNL +L D + + + AGFR LN R
Sbjct: 64 RGGAGNEASSLRRTDDSFRSRVVARLNLMKLLEDPKVADNMIQAGFRGPGPLNTFYFFRF 123
Query: 122 VVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKR 181
P I + L ++F K + P +V V++ VGF AP++++ N++ KR++SI
Sbjct: 124 ATPFILMALTAFYLFVVVK-PDLPMMTQVAMVVMAAGVGFYAPNIYLKNMIDKRRASIMA 182
Query: 182 AWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFEN 241
A+PD+LDLLLICVESG+SI+ A+++V++++GGQS+ L+EE+ L AELS+LP+R++A+E
Sbjct: 183 AFPDSLDLLLICVESGMSIEAAIQKVSQEVGGQSIELAEELSLLSAELSYLPDRRMAYEG 242
Query: 242 FYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVP 301
RTQ ++ A+ Q++ YGT +G +LRV+ E R RL AEKKAA+L KLTVP
Sbjct: 243 MAKRTQHPGIKAVATAMTQAETYGTPLGSALRVMAKENRELRLSAAEKKAAALPAKLTVP 302
Query: 302 MIIFFLPVLILVIIGPAILSIIDTMKD 328
MI+FFLPVL +VI+GPAI++I D MK
Sbjct: 303 MILFFLPVLFVVILGPAIINIQDMMKG 329
>gi|103486613|ref|YP_616174.1| type II secretion system protein [Sphingopyxis alaskensis RB2256]
gi|98976690|gb|ABF52841.1| type II secretion system protein [Sphingopyxis alaskensis RB2256]
Length = 347
Score = 262 bits (670), Expect = 6e-68, Method: Composition-based stats.
Identities = 110/315 (34%), Positives = 178/315 (56%)
Query: 14 LAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLR 73
A + A+ +F+++ A+ + KR+K++ RE L+ S K A +
Sbjct: 27 WAGTLLAAIGVFAVLVAIYNALTVRNPMTKRVKALNERREQLKAGITASTAKRRARLVRK 86
Query: 74 TRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGII 133
+ + +RNF+ +L + + + KL AG RS+ ++ R+V+PI+F L +
Sbjct: 87 NQTADRMRNFLGRLQVLQEGQIKEVQQKLAQAGIRSKDLAVAVIFGRMVLPILFGGLALF 146
Query: 134 WIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLIC 193
I+ D R G + +G+ AP +++ N+ QKR +I++ PDALDLL+IC
Sbjct: 147 LIYIVDMWPTLTPFKRSGFTMAALILGYKAPDLFVDNMRQKRTDAIRKGLPDALDLLVIC 206
Query: 194 VESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRN 253
E+G+++D A RV++++G L EE LT EL FL R+ AFEN R ++ V+
Sbjct: 207 AEAGLTVDSAFSRVSKELGRAYPELGEEFALTSIELGFLTERRQAFENLAYRVNLESVKG 266
Query: 254 ATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILV 313
+IQ+++YGT + +LRVL +E R+ER+M AE+KAA L +TVP+I+F LPVL +V
Sbjct: 267 VVTTMIQTEKYGTPLASALRVLSAEFRNERMMRAEEKAARLPAIMTVPLILFILPVLFIV 326
Query: 314 IIGPAILSIIDTMKD 328
I+GPA S+ D M
Sbjct: 327 ILGPAACSLSDAMAG 341
>gi|227818621|ref|YP_002822592.1| TadC, component of type IV pilus [Sinorhizobium fredii NGR234]
gi|36958877|gb|AAQ87302.1| Tyrosine phenol-lyase [Sinorhizobium fredii NGR234]
gi|227337620|gb|ACP21839.1| TadC, component of type IV pilus [Sinorhizobium fredii NGR234]
Length = 323
Score = 261 bits (668), Expect = 9e-68, Method: Composition-based stats.
Identities = 127/312 (40%), Positives = 192/312 (61%), Gaps = 1/312 (0%)
Query: 11 ATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASS 70
+ A+ T ++ FS + AV P + L +RM+ V ERE +R+++ T L + +
Sbjct: 9 DPDQLSAMLTGIAAFSAVVAVSWPYVFRNTLAERMRKVESERERIRQRERTRLNAEKSKV 68
Query: 71 RLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLIL 130
LR + + V + NL + +I+ +L AG+R + L RL+ PI+
Sbjct: 69 ALRAEPRRFFQAIVDRFNLAKQAENSDILRQLSMAGYRGYAPVTTFLAFRLIAPIVLFAA 128
Query: 131 GIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLL 190
+++I + + P + +G +G+ AP+++I N + KRQ +I+RAWP+ALDLL
Sbjct: 129 CLLYILLVLR-PQAPLLAVIAMAGAMGSLGYFAPAIFIRNRITKRQQAIRRAWPEALDLL 187
Query: 191 LICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDC 250
LI VESG+ I+ A R+V E+IG QS ++EE+LLT AELS+L +R+ AFEN RT ++
Sbjct: 188 LITVESGMGIESAFRKVGEEIGAQSPEVAEEILLTTAELSYLQDRRQAFENLGQRTGVEG 247
Query: 251 VRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVL 310
VR +LIQ+++YGT +G +LRV+ E R R+ EAEKKAA+L PKLTVPMI+FFLPVL
Sbjct: 248 VRAVVTSLIQAEKYGTPLGQALRVMAQENRDMRMSEAEKKAAALPPKLTVPMIVFFLPVL 307
Query: 311 ILVIIGPAILSI 322
VI+ PA + I
Sbjct: 308 FAVIVTPAAIQI 319
>gi|16127170|ref|NP_421734.1| hypothetical protein CC_2940 [Caulobacter crescentus CB15]
gi|221235971|ref|YP_002518408.1| tyrosine phenol-lyase [Caulobacter crescentus NA1000]
gi|13424566|gb|AAK24902.1| hypothetical protein CC_2940 [Caulobacter crescentus CB15]
gi|220965144|gb|ACL96500.1| tyrosine phenol-lyase [Caulobacter crescentus NA1000]
Length = 362
Score = 260 bits (664), Expect = 2e-67, Method: Composition-based stats.
Identities = 128/324 (39%), Positives = 195/324 (60%), Gaps = 4/324 (1%)
Query: 7 DLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAV---EREILRKQQITSL 63
+ + + AV +F+ I + P + LE R+KSVA E +Q I++
Sbjct: 40 ETLTSPSNVLTAFIAVVVFATIITLASPVMRDNNLEGRLKSVANRREELRRRSRQSISTR 99
Query: 64 QKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVV 123
+A LR +D +N V++L L +L D +V KL AGFR ++ R +
Sbjct: 100 APGTAGGTLRHQDEGLYKNVVERLQLSRLLEDPKVVEKLAQAGFRGPKPVSTFYFFRFAM 159
Query: 124 PIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAW 183
P F +++ + P Q ++ A + +G+ AP+V+ISN+ QKR+ SI A+
Sbjct: 160 PFAFAAGAAFYLYVVNDFGLLPMQ-KLCACVAFLALGYYAPNVYISNVAQKRRESIVAAF 218
Query: 184 PDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFY 243
PDALDLLLICVESG+SI+ A+++V ++G S+ L+EE+ L AELS+LP+R++A+EN
Sbjct: 219 PDALDLLLICVESGMSIEAAIQKVGAEVGSSSMELAEELSLLTAELSYLPDRRLAYENLA 278
Query: 244 NRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMI 303
RT +++ A+IQ++RYGT +G +LRV+ E R RL AEKKAA+L +LTVPMI
Sbjct: 279 RRTNHPGIKSVATAMIQAERYGTPLGTALRVMAKENRELRLSAAEKKAAALPAQLTVPMI 338
Query: 304 IFFLPVLILVIIGPAILSIIDTMK 327
+FFLPVL ++I+GPAI+ + D K
Sbjct: 339 LFFLPVLFIMILGPAIMKVQDAFK 362
>gi|85373127|ref|YP_457189.1| hypothetical protein ELI_01500 [Erythrobacter litoralis HTCC2594]
gi|84786210|gb|ABC62392.1| hypothetical protein ELI_01500 [Erythrobacter litoralis HTCC2594]
Length = 331
Score = 259 bits (663), Expect = 3e-67, Method: Composition-based stats.
Identities = 104/314 (33%), Positives = 179/314 (57%)
Query: 14 LAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLR 73
L +I ++ +++ A+ + KR+K++ R+ L+ + S K S +
Sbjct: 17 LVGSILAGLAALAVMMAIYAAVTIKDPMAKRVKALNERRDELKAGIVKSSGKKRQSLVRK 76
Query: 74 TRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGII 133
T ++ +++ ++ + + E I KL AG R++ +++ RLV+PI+ + +
Sbjct: 77 TDQTEKVKDTLQNMKVLQQSQIEVIQQKLAHAGIRNKELAVVVIGARLVLPIVLGGIVAL 136
Query: 134 WIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLIC 193
++G D E+ R A+++ +G+ P + + N KR +I++ PDALDLL+IC
Sbjct: 137 VVYGLDFFPEWGAMKRYAALVVAMGLGYKGPEMLLKNKAAKRTDAIRKGLPDALDLLVIC 196
Query: 194 VESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRN 253
E+G+++D A RVA+++G L +E LT ELSFL R+ AF+N R ++ V+
Sbjct: 197 AEAGLTVDAAFNRVAKELGRAYPELGDEFALTAIELSFLTERKQAFDNLAYRVDLEAVKG 256
Query: 254 ATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILV 313
++Q++RYGT + +LRVL +E R+ER+M AE+KAA L +TVP+I+F LPVL +V
Sbjct: 257 VVTTMVQTERYGTPLASALRVLSAEFRNERMMRAEEKAARLPAIMTVPLILFILPVLFIV 316
Query: 314 IIGPAILSIIDTMK 327
I+GPA SI D
Sbjct: 317 ILGPAACSISDAFS 330
>gi|255264846|ref|ZP_05344188.1| type II secretion system protein [Thalassiobium sp. R2A62]
gi|255107181|gb|EET49855.1| type II secretion system protein [Thalassiobium sp. R2A62]
Length = 323
Score = 259 bits (662), Expect = 4e-67, Method: Composition-based stats.
Identities = 74/278 (26%), Positives = 143/278 (51%)
Query: 51 EREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSE 110
+ + L K + ++ S + + L + L + I KL AG+R +
Sbjct: 43 QEDPLDKLKRNNVTPGQRDSLRFNQGTDKLDKYADFLEPQDEEEYSAIRLKLLQAGYRGK 102
Query: 111 YSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISN 170
++ + + I L+ G+ + E Q + ++++ G VG+ AP W++
Sbjct: 103 SAVRTFHFAQFALGIALLLAGVAYAIYNSTAGEPSTQSTIMSILIPGCVGYMAPKYWVTK 162
Query: 171 LVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELS 230
Q RQ +I +PD+LD++L+CVE+G S+DQ++ RV++++ L+ E + E+
Sbjct: 163 RQQTRQEAITNGFPDSLDMMLVCVEAGQSLDQSILRVSQELKSGFPDLASEYEIVSHEMK 222
Query: 231 FLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKK 290
++ + R + + + LIQS +GTSI ++LRV E R +R+M AE+K
Sbjct: 223 AGKDKTSVLRDMSERCGVPDIASFVTVLIQSQSFGTSIAEALRVYAGEMRDKRVMRAEEK 282
Query: 291 AASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMKD 328
A +L K+T+ ++ +P L++++IGP++ I +T+K
Sbjct: 283 ANTLPTKMTLATMMLTVPPLLIILIGPSVYGIAETLKS 320
>gi|326388860|ref|ZP_08210442.1| type II secretion system protein [Novosphingobium nitrogenifigens
DSM 19370]
gi|326206460|gb|EGD57295.1| type II secretion system protein [Novosphingobium nitrogenifigens
DSM 19370]
Length = 339
Score = 258 bits (660), Expect = 8e-67, Method: Composition-based stats.
Identities = 103/310 (33%), Positives = 174/310 (56%)
Query: 17 AITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRD 76
+ ++ +++ A+ + KR+KS+ RE L+ + + K S R
Sbjct: 25 TVLAGLAAVAVVLAIYAAVTVRDPMAKRVKSLNERREELKAGIVVAASKKRTSIVRRNET 84
Query: 77 SKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIF 136
+ +R+ +++L + KL AG R + ++ R++ P++ L ++I+
Sbjct: 85 TDRIRSILERLRVLQDSQLATAQQKLAQAGIRKKEWGVAVIFGRMIGPMVLGGLAALFIY 144
Query: 137 GYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVES 196
G + +P + GA ++ G+ P V+++NL+ KR ++I++ PDALDLL+IC E+
Sbjct: 145 GLNYFPTWPDYKKFGAFAVMVLAGYKGPDVFVANLIGKRTNAIRKGLPDALDLLVICAEA 204
Query: 197 GISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQ 256
G++ID A RVA ++G L +E LT ELSFL R+ AFEN R ++ +R
Sbjct: 205 GLTIDAAFSRVARELGRAYPELGDEFSLTAIELSFLTERRSAFENLAYRVNLESMRGVVT 264
Query: 257 ALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIG 316
+IQ++RYGT + +LRVL +E R+ER+M AE+KAA L +T+P+I+F LP L +VI+G
Sbjct: 265 TMIQTERYGTPLASALRVLSAEFRNERMMRAEEKAARLPAIMTIPLILFILPTLFVVILG 324
Query: 317 PAILSIIDTM 326
PA S+ D
Sbjct: 325 PAACSLSDNF 334
>gi|149186259|ref|ZP_01864573.1| hypothetical protein ED21_31019 [Erythrobacter sp. SD-21]
gi|148830290|gb|EDL48727.1| hypothetical protein ED21_31019 [Erythrobacter sp. SD-21]
Length = 329
Score = 258 bits (660), Expect = 8e-67, Method: Composition-based stats.
Identities = 111/314 (35%), Positives = 186/314 (59%), Gaps = 1/314 (0%)
Query: 14 LAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLR 73
L +I ++ F++I+A+ + KR+K++ RE L+ +T+ K S +
Sbjct: 16 LVGSILAGIAAFAVIFAIYTAVTIKDPMAKRVKALEGRREELKLGLVTAGAKKRQSLVRK 75
Query: 74 TRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGII 133
T + +R + + + + + KL AGFR++ IL+ +R+V+PI+F + I
Sbjct: 76 TNTTDKVRETLGNMKVLQDSQVQMMQQKLAWAGFRNKEVAVILIGLRMVLPIVFGSIAAI 135
Query: 134 WIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLIC 193
++G + ++ F+ RV A+ + G+ P +++SN+ KR +I++ PDALDLL+IC
Sbjct: 136 LLYGIEIYPDWQFK-RVAALAFAVFAGYKGPEIYLSNIASKRTDAIRKGLPDALDLLVIC 194
Query: 194 VESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRN 253
E+G+++D A RVA+++G L +E LT ELSFL R+ AF+N R ++ V+
Sbjct: 195 AEAGLTVDAAFNRVAKELGRAYPELGDEFALTAIELSFLNERKKAFDNLAYRVNLEAVKG 254
Query: 254 ATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILV 313
++Q++RYGT + +LRVL +E R+ER+M AE+KAA L +TVP+I+F LPVL +V
Sbjct: 255 VVTTMVQTERYGTPLASALRVLSAEFRNERMMRAEEKAARLPAIMTVPLIMFILPVLFIV 314
Query: 314 IIGPAILSIIDTMK 327
I+GPA SI D
Sbjct: 315 ILGPAACSIADAFS 328
>gi|159043673|ref|YP_001532467.1| type II secretion system protein [Dinoroseobacter shibae DFL 12]
gi|157911433|gb|ABV92866.1| type II secretion system protein [Dinoroseobacter shibae DFL 12]
Length = 331
Score = 258 bits (659), Expect = 1e-66, Method: Composition-based stats.
Identities = 85/277 (30%), Positives = 143/277 (51%), Gaps = 1/277 (0%)
Query: 53 EILRKQQITSLQKDSASSRLRTRD-SKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEY 111
+ R +D +LR D K L F + L + I KL AG+R +
Sbjct: 51 KQERLGTAKRAAEDGKGKQLRQDDPGKKLERFSQYLEPQDNEELSAIRLKLIQAGYRQKS 110
Query: 112 SLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNL 171
S+ I +L + + FL +G+I+ F + + ++ G+ G+ P W+
Sbjct: 111 SVQIFHFAQLALGLGFLSIGVIYTFFFGGGEDPDVTKATLTTLVPGFCGYYLPKYWVDKR 170
Query: 172 VQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSF 231
+ KRQ I +PD+LDL+L+CVE+G +DQA+ RVA +I L++E + E+
Sbjct: 171 IDKRQEEITNGFPDSLDLMLVCVEAGQGLDQAIIRVAHEIRAGYPDLADEFEMVAFEIKA 230
Query: 232 LPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKA 291
++ ++ R + V + LIQS +GTSI D+LRV E R +R+M AE+KA
Sbjct: 231 GKDKITVLKDMAERCGVGDVTSFVTVLIQSQSFGTSIADALRVYAGEMRDKRVMRAEEKA 290
Query: 292 ASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMKD 328
L KLT+ ++F +P L++++IGP++ SI +++
Sbjct: 291 NVLPTKLTLGTMMFTVPPLLIILIGPSMWSIYESLSQ 327
>gi|150377235|ref|YP_001313830.1| type II secretion system protein [Sinorhizobium medicae WSM419]
gi|150031782|gb|ABR63897.1| type II secretion system protein [Sinorhizobium medicae WSM419]
Length = 321
Score = 257 bits (658), Expect = 1e-66, Method: Composition-based stats.
Identities = 133/315 (42%), Positives = 194/315 (61%), Gaps = 2/315 (0%)
Query: 11 ATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASS 70
E AI S FS + + P + L +RM+ V ERE +R+++ L++ S +
Sbjct: 9 DAEQLAAIMAGFSAFSAVVVISWPYVFRDTLSERMRKVEGERERIRRRERARLEQKS-KT 67
Query: 71 RLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLIL 130
LR + + V + L D IV KL AG+R ++ L RL+ P++ +
Sbjct: 68 SLRVEPKRLFQAIVDRFRLAKQADDGEIVRKLSMAGYRGHAAVTAFLAFRLIAPVVIFMA 127
Query: 131 GIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLL 190
+++I + E P L V I G +G+ AP++++SN + KRQ SI+R+WP+ALDLL
Sbjct: 128 CLLYILLAVR-PEAPLLLVVAMAIATGALGYFAPAIFVSNRITKRQQSIRRSWPEALDLL 186
Query: 191 LICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDC 250
LI VESG+ I+ A R+V E+IG QS +EE+LLT AELS+L +R+ AFEN RT ++
Sbjct: 187 LITVESGMGIESAFRKVGEEIGTQSPETAEEILLTTAELSYLQDRRQAFENLGQRTGVEG 246
Query: 251 VRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVL 310
VR +LIQ+++YGT +G +LRV+ E R R+ EAEKKAA+L PKLTVPMI+FFLPVL
Sbjct: 247 VRAVVTSLIQAEKYGTPLGQALRVMAQENRDMRMSEAEKKAAALPPKLTVPMILFFLPVL 306
Query: 311 ILVIIGPAILSIIDT 325
VII PA++ I++
Sbjct: 307 FAVIITPAVIQIMNM 321
>gi|299132291|ref|ZP_07025486.1| Type II secretion system F domain protein [Afipia sp. 1NLS2]
gi|298592428|gb|EFI52628.1| Type II secretion system F domain protein [Afipia sp. 1NLS2]
Length = 325
Score = 257 bits (657), Expect = 1e-66, Method: Composition-based stats.
Identities = 136/327 (41%), Positives = 193/327 (59%), Gaps = 2/327 (0%)
Query: 1 MPHYFFDLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQI 60
M D + A++ + YA++ P S L +RMK+VA ERE +R+++
Sbjct: 1 MLDMLIDKVQDVRFLTMVFAAIAASATAYALISPLFASDGLTRRMKAVANERERIRQRER 60
Query: 61 TSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVR 120
+ + LR + + V NL L E KL AG+R L R
Sbjct: 61 ERMNNSERVT-LRQSPKQFIGKIVHDFNLGKWLAQEEAKEKLVMAGYRGHAPYITFLFFR 119
Query: 121 LVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIK 180
+V PI+ L + ++IF K L +++G I + G AP +++ N + KRQ SIK
Sbjct: 120 MVTPIVLLAVTALYIFVILK-LNQTTLVKIGICIGAAWFGMQAPMLFLKNAISKRQLSIK 178
Query: 181 RAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFE 240
RA+PDALDLLLICVESG+SI+ A R+V+ +IG QSV L+EE LT AELS+L +R+ A+E
Sbjct: 179 RAFPDALDLLLICVESGMSIEAAFRKVSFEIGSQSVALAEEFTLTTAELSYLQDRKTAYE 238
Query: 241 NFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV 300
N RT +D V++ AL+QS+RYGT +G +LRV+ E R R+ EAEKKAA+L PKLTV
Sbjct: 239 NLQKRTGIDGVKSVCMALMQSERYGTPLGQTLRVMAQENRDMRMTEAEKKAAALPPKLTV 298
Query: 301 PMIIFFLPVLILVIIGPAILSIIDTMK 327
PMI+FFLP+L +VI+GP + + M
Sbjct: 299 PMIVFFLPILFVVILGPTGIKVAAYMH 325
>gi|114705450|ref|ZP_01438358.1| probable pilus assembly protein [Fulvimarina pelagi HTCC2506]
gi|114540235|gb|EAU43355.1| probable pilus assembly protein [Fulvimarina pelagi HTCC2506]
Length = 328
Score = 257 bits (657), Expect = 2e-66, Method: Composition-based stats.
Identities = 141/317 (44%), Positives = 208/317 (65%), Gaps = 2/317 (0%)
Query: 12 TELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSAS-- 69
E+ ++ ++++F+ + AVV+P L L+ RMKSVA+ER+ +R ++ L +D
Sbjct: 12 PEVFFSVVLSLAVFASVLAVVLPQLERNRLQSRMKSVAIERDEMRARERARLGRDKGGKP 71
Query: 70 SRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLI 129
S + + + V LNL+ LVD+ + KLR AGFRS+ L + L +R+ + +
Sbjct: 72 SLRQVEERGFVSRVVTSLNLRKALVDDATIAKLRVAGFRSQRHLTLFLFLRIALALALFA 131
Query: 130 LGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDL 189
+++ G L E P +R+ A + Y+GF P +++ N KRQ+SI+RAWPDALDL
Sbjct: 132 FAALYVLGLGLLAEQPLMMRIVACVGAAYIGFVLPVMYLRNAATKRQASIQRAWPDALDL 191
Query: 190 LLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMD 249
LLICVESG SI+ + R+VAE+IG QS+ L+EE++LT AELS+LP R+ A++N RT ++
Sbjct: 192 LLICVESGKSIEASFRKVAEEIGIQSIALAEELMLTCAELSYLPERRTAYDNLILRTDLE 251
Query: 250 CVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPV 309
VR AL Q++RYGT IG +LR + E R R+ AEKKAA+L PKLTVPMI+FFLPV
Sbjct: 252 GVRATMTALTQAERYGTPIGSALRTMAQENRDLRMNAAEKKAAALPPKLTVPMIVFFLPV 311
Query: 310 LILVIIGPAILSIIDTM 326
L+ +I+ PA +S+ID M
Sbjct: 312 LMAIILAPAAISMIDAM 328
>gi|307318085|ref|ZP_07597521.1| Type II secretion system F domain protein [Sinorhizobium meliloti
AK83]
gi|306896126|gb|EFN26876.1| Type II secretion system F domain protein [Sinorhizobium meliloti
AK83]
Length = 321
Score = 254 bits (649), Expect = 1e-65, Method: Composition-based stats.
Identities = 131/315 (41%), Positives = 190/315 (60%), Gaps = 2/315 (0%)
Query: 11 ATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASS 70
E AI S FS + V P + L RM+ V ERE +R+++ L++ S S
Sbjct: 9 DPEQLAAIMAGFSAFSAVVVVSWPYVFRDTLSDRMRRVEGERERIRQRERARLEEKSRVS 68
Query: 71 RLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLIL 130
LR + + V + L D IV KL AG+R ++ L RL+ P+
Sbjct: 69 -LRVEPKRLFQAIVDRFRLAKQAEDGEIVRKLSMAGYRGHAAVTAFLAFRLIAPVAIFAA 127
Query: 131 GIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLL 190
+++I + E P L V +G +G+ +P++++ N + KRQ SI+R+WP+ALDLL
Sbjct: 128 CLLYILLVVR-PEAPLLLVVAMAGAMGALGYFSPAIFVRNRITKRQQSIRRSWPEALDLL 186
Query: 191 LICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDC 250
LI VE+G+ I+ A R+V E+IG QS +EE+LLT AELS+L +R+ AFEN RT ++
Sbjct: 187 LITVEAGMGIESAFRKVGEEIGTQSPETAEEILLTTAELSYLQDRRQAFENLGQRTGVEG 246
Query: 251 VRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVL 310
VR +LIQ+++YGT +G +LRV+ E R R+ EAEK+AA+L PKLTVPMI+FFLPVL
Sbjct: 247 VRAVVTSLIQAEKYGTPLGQALRVMAQENRDMRMSEAEKRAAALPPKLTVPMILFFLPVL 306
Query: 311 ILVIIGPAILSIIDT 325
VII PA++ I+ T
Sbjct: 307 FAVIITPAVIQIMST 321
>gi|84501671|ref|ZP_00999843.1| type II/IV secretion system protein, TadC subfamily protein
[Oceanicola batsensis HTCC2597]
gi|84390292|gb|EAQ02851.1| type II/IV secretion system protein, TadC subfamily protein
[Oceanicola batsensis HTCC2597]
Length = 330
Score = 254 bits (648), Expect = 2e-65, Method: Composition-based stats.
Identities = 82/269 (30%), Positives = 137/269 (50%)
Query: 57 KQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNIL 116
KQ T D+ + ++ L + L + + KL AG+RS+ S+
Sbjct: 48 KQNGTPATADNKDKLRNNKRNQRLERYSSFLEPQNEKEYSAMRIKLLQAGYRSKDSVRYF 107
Query: 117 LVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQ 176
+ + I L+ G+I+ + Q V ++ G VG+ P WI+ +RQ
Sbjct: 108 HFAQFALGIFGLLGGVIYFIAVKAADQPDTQTTVMYILGPGGVGYLIPKYWINKRQAQRQ 167
Query: 177 SSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQ 236
I +PDALD+LL+CVE+G S+DQA+ RVA++I L++E L E+ ++
Sbjct: 168 EEITNGFPDALDMLLVCVEAGQSMDQAILRVAKEIRVSYPSLADEFELVSHEIKAGKDKA 227
Query: 237 VAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGP 296
+ R + + + LIQS +GTS+ D+LRV SE R +R+M AE+KA L
Sbjct: 228 SVLGDMAERCGVPDIASFVTVLIQSASFGTSVADALRVYASEMRDKRVMRAEEKANKLPT 287
Query: 297 KLTVPMIIFFLPVLILVIIGPAILSIIDT 325
K+T+ ++ +P L++++IGP++L I
Sbjct: 288 KMTLATMMLTVPPLLIILIGPSVLGITKM 316
>gi|254441173|ref|ZP_05054666.1| Bacterial type II secretion system protein F domain [Octadecabacter
antarcticus 307]
gi|198251251|gb|EDY75566.1| Bacterial type II secretion system protein F domain [Octadecabacter
antarcticus 307]
Length = 326
Score = 253 bits (646), Expect = 3e-65, Method: Composition-based stats.
Identities = 71/283 (25%), Positives = 143/283 (50%)
Query: 45 MKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRA 104
++ A + L+ ++ + L + L + I KL
Sbjct: 40 LQKKADPLDKLKASNYARDLSSRPEKLRASQGTDKLDKYSSFLEPQDEEEYSAIQLKLIQ 99
Query: 105 AGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAP 164
AG+R++ ++ + ++ I+ L+ GI + + + +++ G G+ P
Sbjct: 100 AGYRTKSAVKTYHFTQFMLGIVLLVGGITYAIYNSATGDPTTNATIMSILGPGMAGYYLP 159
Query: 165 SVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLL 224
W+ +RQ + +PD+LD++L+CVE+G S+DQ++ RVA ++ L+EE +
Sbjct: 160 KWWVGKRQAERQLEMINGFPDSLDMMLVCVEAGQSLDQSIIRVAHELKSGFPALAEEYQM 219
Query: 225 TIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERL 284
E+ ++ + RT + + + LIQS ++GTSI ++LRV +E R +R+
Sbjct: 220 VSHEMKAGKDKTQVLRDMAERTGVADISSFVTVLIQSQQFGTSIAEALRVFSAEMRDKRV 279
Query: 285 MEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
M AE+KA +L K+T+ ++ +P L++++IGP+I +I +T++
Sbjct: 280 MRAEEKANTLPTKMTLATMLLTVPPLLIILIGPSIYNIYETLQ 322
>gi|110679391|ref|YP_682398.1| TadC family type II/IV secretion system protein [Roseobacter
denitrificans OCh 114]
gi|109455507|gb|ABG31712.1| type II/IV secretion system protein, TadC subfamily, putative
[Roseobacter denitrificans OCh 114]
Length = 355
Score = 252 bits (643), Expect = 6e-65, Method: Composition-based stats.
Identities = 73/269 (27%), Positives = 140/269 (52%), Gaps = 1/269 (0%)
Query: 57 KQQITSLQKDSASSRLRT-RDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNI 115
K+QI + + ++ RLR ++ L+ F L + + LR AG++S+ ++
Sbjct: 79 KRQIQTPETNAPEQRLRQGERNEQLQRFASFLEPQDVAELSARQLMLRQAGYQSQDAVRF 138
Query: 116 LLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKR 175
+ + I L+L +++ + Q + I+ G VG+ P W+ V R
Sbjct: 139 FHFAQFALGIAGLVLAFVYLNLLGHGEGFTTQKMMIYTIIPGAVGYYLPVYWVRRRVDAR 198
Query: 176 QSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNR 235
+ I R +PD+LD++L+CVE+G S+DQ + RV++++ L++E + E+ ++
Sbjct: 199 KDEITRGFPDSLDMMLVCVEAGQSLDQCIVRVSKELHASYPALAQEFDVVAYEMKAGKDK 258
Query: 236 QVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLG 295
+F R + V + L QS ++GTSI ++LRV E R +R+M AE+ A L
Sbjct: 259 TTVLNDFGERCGVQDVSSFVTVLNQSQQFGTSIAEALRVYAEEMRDKRVMRAEEAANKLP 318
Query: 296 PKLTVPMIIFFLPVLILVIIGPAILSIID 324
K+T+ ++ +P L+++++GP++ I
Sbjct: 319 TKMTLATMMLTVPPLLIILVGPSVHGITQ 347
>gi|260431089|ref|ZP_05785060.1| type II/IV secretion system protein, TadC subfamily [Silicibacter
lacuscaerulensis ITI-1157]
gi|260414917|gb|EEX08176.1| type II/IV secretion system protein, TadC subfamily [Silicibacter
lacuscaerulensis ITI-1157]
Length = 327
Score = 251 bits (642), Expect = 1e-64, Method: Composition-based stats.
Identities = 77/308 (25%), Positives = 156/308 (50%), Gaps = 10/308 (3%)
Query: 18 ITTAVSIFSLIYAVVIPSLGS-GELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRD 76
+ + +F ++ + I L+K ++ + ++ + ++ Q
Sbjct: 23 VVGVLGMFMILVTIPILLNQPEDPLKKLQRANSSQKRDRKNKKEQLRQASR--------- 73
Query: 77 SKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIF 136
++ L F L K + KLR AG+ S+ ++ + + II +++G++ +
Sbjct: 74 NEQLEKFASFLEPKDEQEYSAMQLKLRQAGYVSKDAVRFFHFAQFSLGIIGIVIGVLLVT 133
Query: 137 GYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVES 196
+ E+ Q + V++ G +G+ P WI+ V++R+ +I +PD LDL+L+CVE+
Sbjct: 134 VFSNGQEFSGQQVLIRVLVPGAIGYYLPKYWITRRVEERKEAITAGFPDTLDLMLVCVEA 193
Query: 197 GISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQ 256
G S+DQA+ RVA ++ +++E + E+ ++ +F R + V +
Sbjct: 194 GQSLDQAIVRVASEMKSSYPDIAQEFEIVAYEMKAGKDKNQVLRDFGTRCGVQDVSSFVT 253
Query: 257 ALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIG 316
+IQS +GTSI D+LRV E R +R+M AE+ A L K+T+ ++ +P L+++++G
Sbjct: 254 VMIQSATFGTSIADALRVYAGEMRDKRVMRAEEAANKLPTKMTLATMMLTVPPLLIILVG 313
Query: 317 PAILSIID 324
P+ I++
Sbjct: 314 PSAKGIME 321
>gi|89068023|ref|ZP_01155440.1| type II/IV secretion system protein, TadC subfamily protein
[Oceanicola granulosus HTCC2516]
gi|89046262|gb|EAR52319.1| type II/IV secretion system protein, TadC subfamily protein
[Oceanicola granulosus HTCC2516]
Length = 987
Score = 250 bits (640), Expect = 2e-64, Method: Composition-based stats.
Identities = 75/275 (27%), Positives = 151/275 (54%), Gaps = 1/275 (0%)
Query: 53 EILRKQQITSLQKDSASSRLRTRD-SKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEY 111
+ L++++ + +LR + + L + L + I KL AG+R++
Sbjct: 708 DRLKRRESDETKNLMKGEKLRQKKGTDKLDKYSNFLEPQDKAEYSAIQLKLLQAGYRTKN 767
Query: 112 SLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNL 171
++ + + + I+ L+LG+ + ++ + Q + ++++ G G+ P W++
Sbjct: 768 AVRLYHFAQFALGIVMLLLGVAYAIWKNQTGDPTTQSTILSILIPGSAGYMLPKYWVNKR 827
Query: 172 VQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSF 231
Q+RQ I+ +PD+LD++L+CVE+G S+DQ++ RVA ++ L+ E L E+
Sbjct: 828 QQERQQEIENGFPDSLDMMLVCVEAGQSLDQSIIRVARELKTGFPALAWEYELVAYEMKA 887
Query: 232 LPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKA 291
++ ++ R ++ V + LIQS ++GTSI ++LRV E R +R+M AE+KA
Sbjct: 888 GKDKISVLKDMSERCGVNDVASFVTVLIQSQQFGTSIAEALRVYAGEMRDKRVMRAEEKA 947
Query: 292 ASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
+L K+T+ ++ +P L++++IGP++ I DT+
Sbjct: 948 NTLPTKMTLATMMLTVPPLLIILIGPSVFDIYDTL 982
>gi|126737249|ref|ZP_01752984.1| type II/IV secretion system protein, TadC subfamily [Roseobacter
sp. SK209-2-6]
gi|126721834|gb|EBA18537.1| type II/IV secretion system protein, TadC subfamily [Roseobacter
sp. SK209-2-6]
Length = 322
Score = 249 bits (636), Expect = 4e-64, Method: Composition-based stats.
Identities = 81/306 (26%), Positives = 162/306 (52%), Gaps = 15/306 (4%)
Query: 21 AVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRD-SKS 79
A+ F+ IY + P L+K +++A E +K ++ RLR D ++
Sbjct: 26 ALIAFAAIYLIRQP---EDPLKKLQRNIAPE-----------TRKSASKERLRQNDRNEQ 71
Query: 80 LRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYD 139
L+ F L + + KLR AG+ S+ ++ +L + +I L G+ +++ +
Sbjct: 72 LQKFATFLEPQDAEELSAMELKLRQAGYLSKDAVRFFFFAQLALALIGLAGGMFYVYVLN 131
Query: 140 KLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGIS 199
+ + Q + ++ G VG+ P W++ V++R+ I++ +PD+LD++L+CVE+G S
Sbjct: 132 ADMTFDTQQLLIRIVGPGAVGYMLPKYWVTRRVEERRQKIEQGFPDSLDMMLVCVEAGQS 191
Query: 200 IDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALI 259
+DQ++ RVA ++ L+ E + E+ +++ + R + + + +I
Sbjct: 192 LDQSIVRVATELRASFPDLAYEFEIVAQEMKAGKDKEKVLRDMGTRCGVQDISSFVTVMI 251
Query: 260 QSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAI 319
QS +GTSI D+LRV E R +R+M AE+ A L K+T+ ++ +P L+++++GP++
Sbjct: 252 QSQSFGTSIADALRVYAGEMRDKRVMRAEEAANKLPVKMTLATMMLTVPPLLIILVGPSV 311
Query: 320 LSIIDT 325
I++
Sbjct: 312 QGILNM 317
>gi|254475205|ref|ZP_05088591.1| type II/IV secretion system protein, TadC subfamily [Ruegeria sp.
R11]
gi|214029448|gb|EEB70283.1| type II/IV secretion system protein, TadC subfamily [Ruegeria sp.
R11]
Length = 327
Score = 249 bits (635), Expect = 7e-64, Method: Composition-based stats.
Identities = 84/307 (27%), Positives = 155/307 (50%), Gaps = 7/307 (2%)
Query: 19 TTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRD-S 77
AV + L ++ L + E MK + R ++ K RLR D +
Sbjct: 21 LLAVGLLGLFMILLAIPLLLNQPEDPMKKLQ------RSMSESTRDKKPQKERLRQADRN 74
Query: 78 KSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFG 137
+ L+ F L + + KLR AG++S+ S+ + + + ++ L+ G+++++
Sbjct: 75 EQLQKFASFLEPQNADELSAMELKLRQAGYQSKDSVRLFHFAQFALGLVGLVAGLVYVYV 134
Query: 138 YDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESG 197
+ +EY Q + +I G + P WI+ +++R+ I +PDALD++L+CVE+G
Sbjct: 135 LNADMEYDSQQMIIRIIGPGAAAYMLPKYWITRRIEERKQEITSGFPDALDMMLVCVEAG 194
Query: 198 ISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQA 257
S+DQA+ RVA+++ L+EE + E+ + + R + V +
Sbjct: 195 QSLDQAIVRVAKELHASYPALAEEFEVVAYEMKAGKEKDKVLRDMGTRCGVQDVSSFVTV 254
Query: 258 LIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGP 317
+IQS +GTSI D+LRV E R +R+M AE+ A L K+T+ + +P L+++++GP
Sbjct: 255 MIQSATFGTSIADALRVYAGEMRDKRVMRAEEAANKLPTKMTLATMTLTVPPLLIILVGP 314
Query: 318 AILSIID 324
+ I +
Sbjct: 315 SAQGIAN 321
>gi|170750194|ref|YP_001756454.1| type II secretion system protein [Methylobacterium radiotolerans
JCM 2831]
gi|170656716|gb|ACB25771.1| type II secretion system protein [Methylobacterium radiotolerans
JCM 2831]
Length = 325
Score = 248 bits (634), Expect = 8e-64, Method: Composition-based stats.
Identities = 130/292 (44%), Positives = 195/292 (66%), Gaps = 1/292 (0%)
Query: 34 PSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAIL 93
P L + L KRMK V+ ERE +R+++ S ++ + LRT +++ V++ L+ L
Sbjct: 34 PFLETDRLGKRMKLVSDEREQIRRRERLSAERTGNRATLRTEPKAYMKSIVERYQLRRWL 93
Query: 94 VDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAV 153
+ KL AG+R + + L RLVVP++ +I + ++F + +L+ + +R G V
Sbjct: 94 GTDTAKRKLMQAGYRGQGAETAFLFFRLVVPVVAVIAALFYLFVLE-VLDASYLMRFGLV 152
Query: 154 ILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGG 213
I Y+G AP +++ N +KRQ+ I++AWPDALDL LICVESG++I+ A R+V+ +I
Sbjct: 153 IGAAYMGIKAPELFLVNTAKKRQTEIRKAWPDALDLTLICVESGMAIENAFRKVSTEIAT 212
Query: 214 QSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLR 273
SV L+EE+ L AE+SFLP+R+ A+EN RT ++ V++ ALIQ++RYGT +G +LR
Sbjct: 213 SSVVLAEELALMTAEMSFLPDRRQAYENLVMRTGLEPVKSVATALIQAERYGTPVGQALR 272
Query: 274 VLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDT 325
VL E+R R+ EAEKKAA L PKLTVPMI+FFLPVL +VII PA++ I+ T
Sbjct: 273 VLSQESRDMRMNEAEKKAAGLPPKLTVPMILFFLPVLFVVIITPAVIQIMRT 324
>gi|193782687|ref|NP_436096.2| Pilus assembly protein [Sinorhizobium meliloti 1021]
gi|307304378|ref|ZP_07584129.1| Type II secretion system F domain protein [Sinorhizobium meliloti
BL225C]
gi|193073143|gb|AAK65508.2| Pilus assembly protein [Sinorhizobium meliloti 1021]
gi|306902580|gb|EFN33174.1| Type II secretion system F domain protein [Sinorhizobium meliloti
BL225C]
Length = 321
Score = 248 bits (634), Expect = 9e-64, Method: Composition-based stats.
Identities = 131/315 (41%), Positives = 190/315 (60%), Gaps = 2/315 (0%)
Query: 11 ATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASS 70
E AI S FS + V P + L RM+ V ERE +R+++ L++ S S
Sbjct: 9 DPEQLAAIMAGFSAFSAVVVVSWPYVFRDTLSDRMRRVEGERERIRQRERARLEEKSRVS 68
Query: 71 RLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLIL 130
LR + + V + L D IV KL AG+R ++ L RL+ P+
Sbjct: 69 -LRVEPKRLFQAIVDRFRLAKQAEDGEIVRKLSMAGYRGHAAVTAFLAFRLIAPVAIFAA 127
Query: 131 GIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLL 190
+++I + E P L V +G +G+ +P++++ N + KRQ SI+R+WP+ALDLL
Sbjct: 128 CLLYILLVVR-PEAPLLLVVAMAAAMGALGYFSPAIFVRNRITKRQQSIRRSWPEALDLL 186
Query: 191 LICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDC 250
LI VE+G+ I+ A R+V E+IG QS +EE+LLT AELS+L +R+ AFEN RT ++
Sbjct: 187 LITVEAGMGIESAFRKVGEEIGTQSPETAEEILLTTAELSYLQDRRQAFENLGQRTGVEG 246
Query: 251 VRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVL 310
VR +LIQ+++YGT +G +LRV+ E R R+ EAEK+AA+L PKLTVPMI+FFLPVL
Sbjct: 247 VRAVVTSLIQAEKYGTPLGQALRVMAQENRDMRMSEAEKRAAALPPKLTVPMILFFLPVL 306
Query: 311 ILVIIGPAILSIIDT 325
VII PA++ I+ T
Sbjct: 307 FAVIITPAVIQIMST 321
>gi|149200852|ref|ZP_01877827.1| type II/IV secretion system protein, TadC subfamily [Roseovarius
sp. TM1035]
gi|149145185|gb|EDM33211.1| type II/IV secretion system protein, TadC subfamily [Roseovarius
sp. TM1035]
Length = 326
Score = 245 bits (627), Expect = 5e-63, Method: Composition-based stats.
Identities = 76/309 (24%), Positives = 150/309 (48%), Gaps = 11/309 (3%)
Query: 19 TTAVSIFSLIYAVVIPSLGS-GELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDS 77
+ + ++ + + LEK + ++ Q +S + +S +
Sbjct: 24 VGGLGVMLILLTIPLMLRQKQDPLEK----------LKQENQRSSTSVGTKTSLRAGVQN 73
Query: 78 KSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFG 137
K L + L + I KL AG+R ++ + + + LILG+I+
Sbjct: 74 KKLDRYATFLEPQDAKQLSQIRLKLMQAGYRHRDAVRYFHFAQFALGVGLLILGVIYYVL 133
Query: 138 YDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESG 197
E Q + ++ +G+ P W++ QKRQ I+ +PD+LD++L+C+E+G
Sbjct: 134 VKSGTETSTQETLMYILGPAGIGYMMPKYWVTKRQQKRQEEIQDGFPDSLDMMLVCIEAG 193
Query: 198 ISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQA 257
S+DQ++ RVA ++ L++E + ++ ++ R + + +
Sbjct: 194 QSMDQSIIRVASEMRASYPALADEFEIVALQIKAGRDKPSVLGEMAERCGVQDISSFVTV 253
Query: 258 LIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGP 317
L+QS +GTSIG++LRV E R +R+M AE+KA L K+T+ ++ +P L+++++GP
Sbjct: 254 LVQSQTFGTSIGEALRVYAGEMRDKRVMRAEEKANKLPTKMTLATMMLTVPPLLIILVGP 313
Query: 318 AILSIIDTM 326
++L I+D +
Sbjct: 314 SVLGIMDLL 322
>gi|254463054|ref|ZP_05076470.1| type II/IV secretion system protein, TadC subfamily
[Rhodobacterales bacterium HTCC2083]
gi|206679643|gb|EDZ44130.1| type II/IV secretion system protein, TadC subfamily
[Rhodobacteraceae bacterium HTCC2083]
Length = 323
Score = 245 bits (626), Expect = 8e-63, Method: Composition-based stats.
Identities = 84/323 (26%), Positives = 158/323 (48%), Gaps = 13/323 (4%)
Query: 3 HYFFDLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITS 62
F F V + + +L+ I S L+K K+Q+
Sbjct: 9 DMMFATFGPNAQLVLLVVLGGMLALLAVPFIMSKEVDPLDKL------------KEQMQG 56
Query: 63 LQKDSASSRLRT-RDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRL 121
RLR + +K L + K L K I KL AG+R + ++ + ++++
Sbjct: 57 KAAGEDRQRLRAAKGNKQLGKYAKLLEPKDEAEYSAIRLKLIQAGYRDKDAVRLFHLMQM 116
Query: 122 VVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKR 181
++ +IFL++G+++ Q + V+ G G+ P WI+ + R+ I+
Sbjct: 117 ILGVIFLVIGLLYYTFVISGENATTQQMLMYVLGPGGAGYFLPKYWITRRIDTRKEQIES 176
Query: 182 AWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFEN 241
+PD+LD++L+CVE+G S+DQ++ RVA ++ L++E + E+ ++ +
Sbjct: 177 GFPDSLDMMLVCVEAGQSLDQSIVRVAAELHHSYPFLADEYEIVAQEMKAGKDKIAVLND 236
Query: 242 FYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVP 301
R + V + LIQS +GTSI ++LRV E R +R+M AE+KA L K+T+
Sbjct: 237 MSERCGVQDVASFVTVLIQSTSFGTSIAEALRVYAGEMRDKRVMRAEEKANKLPTKMTLA 296
Query: 302 MIIFFLPVLILVIIGPAILSIID 324
++ +P L+++++GP+++ I +
Sbjct: 297 TMMLTVPPLLIILVGPSVVGITE 319
>gi|149915637|ref|ZP_01904163.1| type II/IV secretion system protein, TadC subfamily [Roseobacter
sp. AzwK-3b]
gi|149810529|gb|EDM70372.1| type II/IV secretion system protein, TadC subfamily [Roseobacter
sp. AzwK-3b]
Length = 328
Score = 245 bits (625), Expect = 8e-63, Method: Composition-based stats.
Identities = 81/310 (26%), Positives = 154/310 (49%), Gaps = 9/310 (2%)
Query: 19 TTAVSIFSLIYAV-VIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRT-RD 76
AV ++ + VIP L S ++ R Q+ + ++RLRT R
Sbjct: 21 VIAVGTLGIVLVLLVIPILIKD-------SKDPLEKLKRDQRERAGAPGLDTTRLRTNRK 73
Query: 77 SKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIF 136
++ L + L + + L AG+R+ ++ +L + + FL LG+++
Sbjct: 74 NEKLDKYASFLEPQDAKALSQVRLTLLQAGYRTRDAVRYYHFAQLTLALGFLTLGVLYFL 133
Query: 137 GYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVES 196
+ E Q + ++ G +G+ P W++ Q+RQ I +PD+LD++L CVE+
Sbjct: 134 IFKSGGETSAQQTILYILGPGAIGYMLPKYWVTKRQQQRQEDITNGFPDSLDMMLTCVEA 193
Query: 197 GISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQ 256
G S+DQ++ RV+ +I L+EE + ++ ++ R + + +
Sbjct: 194 GQSLDQSIVRVSNEIAASYPALAEEYQIVANQIKAGRDKPSVLNEMAERCGVQDISSFVT 253
Query: 257 ALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIG 316
L+QS +GTSI D+LRV E R +R+M AE+KA L K+T+ ++ +P L+++++G
Sbjct: 254 VLVQSQTFGTSIADALRVYAGEMRDKRVMRAEEKANKLPTKMTLATMMLTVPPLLIILVG 313
Query: 317 PAILSIIDTM 326
P+++ I++
Sbjct: 314 PSVIGILELF 323
>gi|126729093|ref|ZP_01744907.1| type II/IV secretion system protein, TadC subfamily [Sagittula
stellata E-37]
gi|126710083|gb|EBA09135.1| type II/IV secretion system protein, TadC subfamily [Sagittula
stellata E-37]
Length = 324
Score = 245 bits (625), Expect = 8e-63, Method: Composition-based stats.
Identities = 75/314 (23%), Positives = 152/314 (48%), Gaps = 13/314 (4%)
Query: 12 TELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSR 71
+ VA + I + I ++ + L+K L++ + + +
Sbjct: 18 PLILVAGLAILLILATIP--IMLNTKPDPLDK-----------LKETSQKKMDAQARAVL 64
Query: 72 LRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILG 131
R ++ L + + L + I KL AG+R++ ++ + ++ + + L G
Sbjct: 65 RDKRRNEKLNKYAQFLEPQDAKELSEIKLKLLQAGYRTKDAVQVYYFMQFALGLGMLAAG 124
Query: 132 IIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLL 191
+ + E ++ ++ G VG+ AP WI+ ++KR+ I++ +PDALD++L
Sbjct: 125 TGYYLFFVNPEEADMTTKLMYILGPGCVGYLAPKYWITKRMEKRKEEIQQGFPDALDMML 184
Query: 192 ICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCV 251
+CVE+G S++Q++ RVA+++ L++E + E+ +R + R V
Sbjct: 185 VCVEAGQSMEQSIIRVAKELRASYPALADEFEIISHEMKAGKDRSQVLNDMSERCGSQDV 244
Query: 252 RNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLI 311
+ L Q+ +GTSI D+LRV E R +R+M AE+ A L K+T+ ++ +P L+
Sbjct: 245 SSFVTVLNQAQTFGTSISDALRVYAGEMRDKRVMRAEEAANKLPTKMTLTTMMLTVPPLL 304
Query: 312 LVIIGPAILSIIDT 325
++++GP+ + I
Sbjct: 305 IILVGPSAVGITQM 318
>gi|260427288|ref|ZP_05781267.1| type II/IV secretion system protein, TadC subfamily [Citreicella
sp. SE45]
gi|260421780|gb|EEX15031.1| type II/IV secretion system protein, TadC subfamily [Citreicella
sp. SE45]
Length = 324
Score = 244 bits (624), Expect = 1e-62, Method: Composition-based stats.
Identities = 78/317 (24%), Positives = 161/317 (50%)
Query: 8 LFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDS 67
+FD + + ++ A + L + ++ + L K + ++
Sbjct: 1 MFDNLTAMITERLGPAGPLMVVAGLALLLILSTVPLLLRQKPDPMDKLAKSGRARIDAET 60
Query: 68 ASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIF 127
+ TR + L + + L K+ + KL AG+R+ S+ + + ++V+ +
Sbjct: 61 KAILRDTRRNAKLNKYAQYLEPKSAEELGQMRLKLLQAGYRTPDSVRLYYLAQMVLGLGL 120
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
L G + + + Q ++ ++ G VG+ AP WI+ V++R+ I+ +PDAL
Sbjct: 121 LAAGTAYYVMFKDGPDATMQTKLMYIVGPGAVGYLAPKYWITKRVEERKKQIEEGFPDAL 180
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQ 247
D++L+CVE+G S+DQ++ RV++++ L++E + E+ ++ + R
Sbjct: 181 DMMLVCVEAGQSLDQSIVRVSKELRASYPALADEFEIISHEMRAGKDKSNVLNDMGERCG 240
Query: 248 MDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFL 307
+ V + L Q+ +GTSI D+LR+ SE R +R+M AE+KA L K+T+ ++ +
Sbjct: 241 VQDVSSFVTVLNQAANFGTSIADALRIYASEMRDKRVMRAEEKANKLPTKMTLTTMMLTV 300
Query: 308 PVLILVIIGPAILSIID 324
P L+++++GP+++SI +
Sbjct: 301 PPLLIILVGPSVVSISE 317
>gi|126725975|ref|ZP_01741817.1| type II/IV secretion system protein, TadC subfamily
[Rhodobacterales bacterium HTCC2150]
gi|126705179|gb|EBA04270.1| type II/IV secretion system protein, TadC subfamily
[Rhodobacterales bacterium HTCC2150]
Length = 318
Score = 244 bits (624), Expect = 1e-62, Method: Composition-based stats.
Identities = 78/268 (29%), Positives = 141/268 (52%), Gaps = 1/268 (0%)
Query: 59 QITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLV 118
+ ++ S R + + L + + L K + KL AG+ S+ ++
Sbjct: 52 EKAKAKESRTSLRQKRNKADQLDKYSEFLQPKDEGQLSEMRLKLLQAGYSSKSAVQTFHF 111
Query: 119 VRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSS 178
++ + II LI G I+ F E + + + G G+ P W++ RQ +
Sbjct: 112 LQFALGIIGLIFGCIYAFTM-LPDETTSKQMLMYIGGPGGAGYMLPKYWVTRRRGTRQKN 170
Query: 179 IKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVA 238
I +A+PD+LDL+LICVESG S+DQA+ +V+++I L++E L E+ +++
Sbjct: 171 IIQAFPDSLDLMLICVESGQSLDQAIIKVSKEIRAGYPDLADEFELVAYEIKAGKDKKRV 230
Query: 239 FENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKL 298
++F R + + + LIQ+ YGT I ++LR +E R +R+M AE+KA +L K+
Sbjct: 231 LKDFSERCGVPDISSFVSVLIQAATYGTPIAEALRAYSAEMRDKRVMRAEEKANTLPVKM 290
Query: 299 TVPMIIFFLPVLILVIIGPAILSIIDTM 326
T+ ++F LP L+++++GPA+ I +
Sbjct: 291 TLGTMVFCLPSLLIILVGPAVYKISQVL 318
>gi|85705157|ref|ZP_01036257.1| type II/IV secretion system protein, TadC subfamily protein
[Roseovarius sp. 217]
gi|85670479|gb|EAQ25340.1| type II/IV secretion system protein, TadC subfamily protein
[Roseovarius sp. 217]
Length = 325
Score = 243 bits (620), Expect = 3e-62, Method: Composition-based stats.
Identities = 73/270 (27%), Positives = 138/270 (51%)
Query: 57 KQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNIL 116
KQ T ++ + +K L + L + + KL AG+R ++
Sbjct: 51 KQARTQEALGVKTNLRAGKQNKKLDRYATFLEPQNEKQLSEMRLKLMQAGYRHRDAVRYF 110
Query: 117 LVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQ 176
+ + I LILG+I+ + E Q + ++ +G+ P WI+ QKRQ
Sbjct: 111 HFAQFALGIGLLILGVIYYVLFKSGTETSTQETLMYILGPAGIGYMMPKYWITKRQQKRQ 170
Query: 177 SSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQ 236
I+ +PD+LD++L+C+E+G S+DQ++ RVA ++ L+EE + ++ ++
Sbjct: 171 EEIQDGFPDSLDMMLVCIEAGQSMDQSIIRVASEMRASYPALAEEFEIVSLQIKAGRDKP 230
Query: 237 VAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGP 296
R + + + ++QS +GTSIG++LRV +E R +R+M AE+KA L
Sbjct: 231 SVLNEMAERCGVQDITSFVTVMVQSQTFGTSIGEALRVYAAEMRDKRVMRAEEKANKLPT 290
Query: 297 KLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
K+T+ ++ +P L+++++GP++L I+
Sbjct: 291 KMTLATMMLTVPPLLIILVGPSVLGIMKLF 320
>gi|332188365|ref|ZP_08390090.1| bacterial type II secretion system F domain protein [Sphingomonas
sp. S17]
gi|332011594|gb|EGI53674.1| bacterial type II secretion system F domain protein [Sphingomonas
sp. S17]
Length = 332
Score = 242 bits (619), Expect = 4e-62, Method: Composition-based stats.
Identities = 104/311 (33%), Positives = 169/311 (54%), Gaps = 1/311 (0%)
Query: 16 VAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTR 75
A+ V +F L+ A + +++R++++ RE L+ I K A RT
Sbjct: 16 TAMLWGVCVFCLLVAGYMLIGTRDPMKRRVQALNERREQLKAG-IDPSPKRRAQFIERTD 74
Query: 76 DSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWI 135
+ +R + L + + + KL AG RS+ ++ RL +PI +W+
Sbjct: 75 LLERMRRVLSALKMLQEDQVKAVQLKLLQAGIRSKEMAVAVIFGRLALPIALGGGMALWV 134
Query: 136 FGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVE 195
+G + ++ R V + + + AP + + N + KR +I++ PDALDL++IC E
Sbjct: 135 YGTEDFAQWSGFSRYMMVAGMLVLSYKAPDLALKNQIDKRTHAIRKGLPDALDLMVICAE 194
Query: 196 SGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNAT 255
+G+++D A RVA ++ L +E LT EL FL +R+ A EN R +D +R
Sbjct: 195 AGLTVDAAFARVARELRRAYPELGDEFQLTSVELGFLTDRRQALENLSMRVNLDALRGVV 254
Query: 256 QALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVII 315
+IQ+++YGT + SLRVL +E R+ER+M AE+KAA L +TVP+I+F LP L +VI+
Sbjct: 255 TTMIQTEKYGTPLASSLRVLSAEFRNERMMRAEEKAARLPAIMTVPLILFILPTLFIVIL 314
Query: 316 GPAILSIIDTM 326
GPA SI DT+
Sbjct: 315 GPAGCSINDTL 325
>gi|94497258|ref|ZP_01303830.1| type II secretion system protein [Sphingomonas sp. SKA58]
gi|94423363|gb|EAT08392.1| type II secretion system protein [Sphingomonas sp. SKA58]
Length = 329
Score = 242 bits (618), Expect = 5e-62, Method: Composition-based stats.
Identities = 105/310 (33%), Positives = 175/310 (56%)
Query: 17 AITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRD 76
+ ++ ++++A+ + KR+K++ RE L+ S K A +
Sbjct: 20 TLLAGLATLAVLFALYAVMTVRDPMAKRVKALNERREQLKAGITASTAKRRAKLVKSNQT 79
Query: 77 SKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIF 136
+ +R+F+ L + +++ +L AG RS+ ++ R+++PI + I ++
Sbjct: 80 TDQMRSFLSSLKVLQDDQLKDVQVRLAQAGIRSKDLAVAVIFGRMILPIAIGGMAAILLY 139
Query: 137 GYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVES 196
G L E+ R A + + + AP ++I N VQKR ++I++ PDALDLL+IC E+
Sbjct: 140 GVGILPEWGPMKRFFAFAVALLLSYKAPDLFIDNKVQKRSAAIRKGLPDALDLLVICAEA 199
Query: 197 GISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQ 256
G+++D A RVA ++G L +E LT ELSFL R++AFEN +R ++D V+
Sbjct: 200 GLTVDAAFARVARELGKAYPELGDEFHLTAIELSFLTERRMAFENLASRVKLDAVKGVVT 259
Query: 257 ALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIG 316
+IQ+++YGT + +LRVL +E R ER+M AE+KAA L +TVP+I+F LP L +VI+G
Sbjct: 260 TMIQTEKYGTPLASALRVLSAEFRHERMMRAEEKAARLPAIMTVPLILFILPTLFVVILG 319
Query: 317 PAILSIIDTM 326
PA SI
Sbjct: 320 PAACSISAAF 329
>gi|77919352|ref|YP_357167.1| Flp pilus assembly protein TadC [Pelobacter carbinolicus DSM 2380]
gi|77545435|gb|ABA88997.1| Flp pilus assembly protein TadC [Pelobacter carbinolicus DSM 2380]
Length = 326
Score = 241 bits (616), Expect = 1e-61, Method: Composition-based stats.
Identities = 94/323 (29%), Positives = 165/323 (51%), Gaps = 10/323 (3%)
Query: 4 YFFDLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSL 63
Y+ L +A AV I T +++ ++ + + L E+R++ + +I K++ L
Sbjct: 8 YYRLLENAGYWAVLILTFLTVALIVMGIYLLFLRKSREEERLEKLLPSSKIPFKKKPKLL 67
Query: 64 QKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVV 123
+ + R + + + K + ++I +L AG+RS + + ++++
Sbjct: 68 EGEGNGFVTR-----FAKPIDEIVANKPGALHKSIRLRLIQAGWRSNAAYYNFITTKVLL 122
Query: 124 PIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAW 183
+IF + +I F + L++ + A+I GF P + +V+ RQ+ I RA
Sbjct: 123 GLIFPLSYLISRFFFTFSLQFVLLCLLLAII-----GFGLPDSILGFVVRSRQNRIMRAL 177
Query: 184 PDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFY 243
PDALDL+++CVE+G+ +D RRV E+I S LS+E LT E+ R F+N
Sbjct: 178 PDALDLMVVCVEAGLGLDMTFRRVGEEIRPLSHDLSDEFHLTNLEIRAGKPRNECFKNMS 237
Query: 244 NRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMI 303
RT + V N LIQ+ R+GTS+ +LRV R +R AE+KAA KL P++
Sbjct: 238 LRTGVPEVSNLMTILIQTSRFGTSLAKALRVHSDAMRIKRRQIAEEKAAKSTVKLIFPLV 297
Query: 304 IFFLPVLILVIIGPAILSIIDTM 326
F P + +V++GP ++ II+ +
Sbjct: 298 FFIFPAIFVVLVGPGVIRIINVL 320
>gi|126733578|ref|ZP_01749325.1| Putative Flp pilus assembly protein TadC [Roseobacter sp. CCS2]
gi|126716444|gb|EBA13308.1| Putative Flp pilus assembly protein TadC [Roseobacter sp. CCS2]
Length = 321
Score = 241 bits (615), Expect = 1e-61, Method: Composition-based stats.
Identities = 81/314 (25%), Positives = 154/314 (49%), Gaps = 12/314 (3%)
Query: 16 VAITTAVSIFSLIYAV-VIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRT 74
+ I + +F ++ + V+ L+K +K+ T K
Sbjct: 18 LMIVGLLGVFLILITLPVLLKKEVDPLDK-IKA---------ANSGTKGDKSKDKKLRSA 67
Query: 75 RDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIW 134
L + L + + KL AG+RS ++ I ++ + I L+ G +
Sbjct: 68 AGKDKLEKYSNFLEPQNAEEYSAVKLKLLQAGYRSTNAVRIYNFMQFALGIFGLLCGGAY 127
Query: 135 -IFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLIC 193
+ +E Q V +++ G G+ P W++ Q RQ +I+ A+PD+LD++L+C
Sbjct: 128 SLIQMSGTVEVTTQQLVMWIMIPGGAGYLLPKYWVTRRQQMRQEAIENAFPDSLDMMLVC 187
Query: 194 VESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRN 253
VE+G S+DQ++ RVA ++ L+EE + E ++ ++ +R + + +
Sbjct: 188 VEAGQSLDQSIIRVARELKSGFPELAEEFEIVSQEAKAGKDKNTVLKDMSDRCGVPDIAS 247
Query: 254 ATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILV 313
L+QS ++GTSI D+LRV +E R +R+M AE+KA L K+T+ ++ +P L+ +
Sbjct: 248 FVTVLVQSSQFGTSIADALRVYSAEMRDKRVMRAEEKANKLPTKMTLATMMLTVPPLMAM 307
Query: 314 IIGPAILSIIDTMK 327
+IGP+I +I+ ++
Sbjct: 308 LIGPSIYAIVTSLG 321
>gi|254486075|ref|ZP_05099280.1| type II/IV secretion system protein, TadC subfamily [Roseobacter
sp. GAI101]
gi|214042944|gb|EEB83582.1| type II/IV secretion system protein, TadC subfamily [Roseobacter
sp. GAI101]
Length = 308
Score = 240 bits (614), Expect = 2e-61, Method: Composition-based stats.
Identities = 76/269 (28%), Positives = 141/269 (52%), Gaps = 1/269 (0%)
Query: 57 KQQITSLQKDSASSRLRTRD-SKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNI 115
K+ T + + RLR D ++ L+ F K L + + LR AG+ S ++
Sbjct: 37 KRSQTEPSERPSQQRLRQSDRNEQLQKFAKFLEPENLDELTAKQLMLRQAGYSSRDAVRF 96
Query: 116 LLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKR 175
++ + I L+ GI+++ Q + + G +G+ P W++ V+KR
Sbjct: 97 FHFAQMALGIGGLVFGIVYVNFLGGGEGLTTQKMMMYTVGPGGIGYYLPKYWVTKRVEKR 156
Query: 176 QSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNR 235
+ I R +PDALD++L+CVE+G S+DQ++ RVA+++ L+EE + E+ ++
Sbjct: 157 KEEITRGFPDALDMMLVCVEAGQSLDQSIVRVAKELHASYPALAEEFEVVAYEMKAGKDK 216
Query: 236 QVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLG 295
+ +R + V + L QS +GTSI D+LRV E R +R+M AE+ A L
Sbjct: 217 VGVLTDMGDRCGVQDVSSFVTVLCQSAAFGTSISDALRVYAEEMRDKRVMRAEEAANKLP 276
Query: 296 PKLTVPMIIFFLPVLILVIIGPAILSIID 324
K+T+ ++ +P L+++++ P++++I
Sbjct: 277 TKMTLATMMLTVPPLLIILVAPSVMNITK 305
>gi|220922784|ref|YP_002498086.1| type II secretion system protein [Methylobacterium nodulans ORS
2060]
gi|219947391|gb|ACL57783.1| type II secretion system protein [Methylobacterium nodulans ORS
2060]
Length = 319
Score = 240 bits (614), Expect = 2e-61, Method: Composition-based stats.
Identities = 129/324 (39%), Positives = 202/324 (62%), Gaps = 5/324 (1%)
Query: 1 MPHYFFDLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQI 60
M L D ++ AV+ + + ++ P L L +RMKSV ER+ +R ++
Sbjct: 1 MLDLLSSLIDP-RFVGSMLAAVAAAATAFTLLQPFLEPDRLARRMKSVGEERDRIRLRER 59
Query: 61 TSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVR 120
L + LR + ++ V++ L L ++ N+L AG+R + L R
Sbjct: 60 ERLNQRGN---LRQQPKAYMKRVVERFKLDNWLATDDAKNRLMMAGYRGPQAETAFLFFR 116
Query: 121 LVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIK 180
LV+P++F ++ + ++F L+ PF +R+ VI Y G AP +++ N KRQ+ IK
Sbjct: 117 LVMPVVFFVVSVFYLFVL-HALDQPFSIRLMIVIAAVYAGIKAPEIFLKNQTTKRQAEIK 175
Query: 181 RAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFE 240
+ WPDALDL+LICVESG++I+ + RRV+ ++ QS+ L+EE+ LT AELS+L +R++A+E
Sbjct: 176 KHWPDALDLMLICVESGMAIEHSFRRVSAEMANQSIVLAEELALTTAELSYLTDRRIAYE 235
Query: 241 NFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV 300
N RT ++ V+ + AL+Q++RYGT +G +LRVL E+R +R+ EAEKKAA+L PKLTV
Sbjct: 236 NLAMRTGLESVKAVSTALVQAERYGTPVGQALRVLAQESRDQRMNEAEKKAAALPPKLTV 295
Query: 301 PMIIFFLPVLILVIIGPAILSIID 324
PMI+FFLPVL +VI+ PA++ I
Sbjct: 296 PMILFFLPVLFVVILTPAMVQIFK 319
>gi|84687272|ref|ZP_01015152.1| type II/IV secretion system protein, TadC subfamily protein
[Maritimibacter alkaliphilus HTCC2654]
gi|84664705|gb|EAQ11189.1| type II/IV secretion system protein, TadC subfamily protein
[Rhodobacterales bacterium HTCC2654]
Length = 324
Score = 240 bits (612), Expect = 3e-61, Method: Composition-based stats.
Identities = 82/314 (26%), Positives = 153/314 (48%), Gaps = 18/314 (5%)
Query: 19 TTAVSIFSLIYAVVIPSLGS----GELEKRMKSVAVEREILRKQQITSLQKDSASSRLRT 74
+ + ++ A+ + +L+K K + E LR+ + +
Sbjct: 22 LGGLGVLLIVGALPLLFKREEDPLNKLKKSQKELEEEHMALRRTESGGM----------- 70
Query: 75 RDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIW 134
L + L + I +L AG+ + ++ + + + L G+I+
Sbjct: 71 --GDKLEKYKSFLEPEDSEEYSAIQLRLLQAGYPGKNAVRTYHFAQFALGLGLLFAGLIY 128
Query: 135 IFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICV 194
F + E Q + V++ G VG+ AP W++ V R+ I +PDALD++L+CV
Sbjct: 129 SFITND-GETSTQKMIMTVLIPGAVGYVAPKYWVTRRVDSRKEEITNGFPDALDMMLVCV 187
Query: 195 ESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNA 254
E+G S+DQA+ RVA++I L++E + E+ +R + R + V++
Sbjct: 188 EAGQSLDQAIIRVAKEIRAGYPALADEFEIVSWEIKAGKDRIQVLRDMGERCGVADVQSF 247
Query: 255 TQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVI 314
LIQS +GTSI ++LRV E R +R+M AE+KA +L K+T+ ++ +P L++++
Sbjct: 248 VTVLIQSTSFGTSIAEALRVYAGEMRDKRVMRAEEKANTLPTKMTLATMMLTVPPLLIIL 307
Query: 315 IGPAILSIIDTMKD 328
IGP++ + T+K+
Sbjct: 308 IGPSVYEVYKTLKN 321
>gi|294012437|ref|YP_003545897.1| Flp pilus assembly protein TadC [Sphingobium japonicum UT26S]
gi|292675767|dbj|BAI97285.1| Flp pilus assembly protein TadC [Sphingobium japonicum UT26S]
Length = 330
Score = 240 bits (612), Expect = 3e-61, Method: Composition-based stats.
Identities = 100/295 (33%), Positives = 162/295 (54%)
Query: 32 VIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKA 91
+ KR+K++ RE L+ S + A + + + +R+F+ L +
Sbjct: 36 YAVMTVRDPMAKRVKALNERREQLKAGITASTARRRAKLVKKNQATDQMRSFLSNLKVLQ 95
Query: 92 ILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVG 151
+ KL AG RS+ ++ RL++PI+ + + ++ E+ R
Sbjct: 96 DDQLKEAQIKLAQAGIRSKDWAVAVIFGRLILPIVIGGMAALLLYAVGIYPEWGGAKRFM 155
Query: 152 AVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDI 211
A + + AP ++I N +QKR ++I++ PDALDLL+IC E+G+++D A RVA ++
Sbjct: 156 AFAGALLLSYKAPDIFIDNKIQKRSAAIRKGLPDALDLLVICAEAGLTVDAAFSRVAREL 215
Query: 212 GGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDS 271
G L +E LT ELSFL R++AFEN R ++D ++ +IQ+++YGT + +
Sbjct: 216 GKAYPELGDEFHLTAIELSFLTERRMAFENLATRVKLDAIKGVVTTMIQTEKYGTPLASA 275
Query: 272 LRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
LRVL +E R ER+M AE+KAA L +TVP+I+F LP L +VI+GPA SI
Sbjct: 276 LRVLSAEFRHERMMRAEEKAARLPAIMTVPLILFILPTLFVVILGPAACSISQAF 330
>gi|254466278|ref|ZP_05079689.1| type II/IV secretion system protein, TadC subfamily
[Rhodobacterales bacterium Y4I]
gi|206687186|gb|EDZ47668.1| type II/IV secretion system protein, TadC subfamily
[Rhodobacterales bacterium Y4I]
Length = 326
Score = 239 bits (611), Expect = 4e-61, Method: Composition-based stats.
Identities = 81/312 (25%), Positives = 158/312 (50%), Gaps = 16/312 (5%)
Query: 19 TTAVSIFSLIY-AVVIPSLGS---GELEKRMKSVAVE-REILRKQQITSLQKDSASSRLR 73
A+ I L + +P L + L+K K++ E R + +K+++ ++
Sbjct: 21 LLALGIAGLFMILLAVPLLLNQPEDPLKKLQKNIKPETRNVPKKERLRQANRN------- 73
Query: 74 TRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGII 133
+ L+ F L + + KLR AG+ S+ S+ + + + ++ L+ G+
Sbjct: 74 ----EQLQKFAGFLEPQNADELSAMELKLRQAGYHSKDSVRLFHFAQFALGLLGLMGGLF 129
Query: 134 WIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLIC 193
+++ ++Y Q ++ G G+ P WI+ +++R+ I +PDALD++L+C
Sbjct: 130 FVYVLKADIDYDSQQMAIRIVGPGAAGYLLPKYWITRRIEERKQKITEGFPDALDMMLVC 189
Query: 194 VESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRN 253
VE+G S+DQA+ RVA+++ L+EE + E+ + + R + + +
Sbjct: 190 VEAGQSLDQAIVRVAKELHASYPDLAEEFEVVAYEMKAGKEKDRVLRDMGTRCGVQDISS 249
Query: 254 ATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILV 313
+IQS +GTSI D+LRV E R +R+M AE+ A L K+T+ + +P L+++
Sbjct: 250 FVTVMIQSASFGTSIADALRVYAGEMRDKRVMRAEEAANKLPVKMTLATMGLTVPPLLII 309
Query: 314 IIGPAILSIIDT 325
++GP+I I++
Sbjct: 310 LVGPSIQGIMNM 321
>gi|294676064|ref|YP_003576679.1| type II secretion system protein [Rhodobacter capsulatus SB 1003]
gi|294474884|gb|ADE84272.1| type II secretion system protein [Rhodobacter capsulatus SB 1003]
Length = 337
Score = 239 bits (609), Expect = 7e-61, Method: Composition-based stats.
Identities = 85/315 (26%), Positives = 161/315 (51%), Gaps = 7/315 (2%)
Query: 14 LAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLR 73
+A+A AV + + + A+V S L+K KS+A + Q TS + +
Sbjct: 21 IALAALGAVLVLAALPALV--SRREDPLDKLRKSLAPGSGTVGAAQATSKKAQKLRN--- 75
Query: 74 TRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGII 133
T L+ F L ++ L AG+R + + V+ + I L LG++
Sbjct: 76 TAGPDKLQKFAGFLEPQSKEEMSESRKWLHKAGYRGPHVVRHFHAVQFALAISLLGLGVL 135
Query: 134 WIFGYDKLLEYPFQL--RVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLL 191
++ Y+ E P + + A++ G G+ AP W++ V R I+ +PDALD+LL
Sbjct: 136 YVLFYNAGHEVPLESTNAIAAILGPGIGGYYAPRRWVNQRVAARTQEIQDGFPDALDMLL 195
Query: 192 ICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCV 251
+CVE+G S+DQ + RV++++ L+EE E+ ++ F R+ + V
Sbjct: 196 VCVEAGQSLDQGIIRVSKELSSSYPALAEEFATVAHEIKAGLDKPTVLRAFAERSGVSDV 255
Query: 252 RNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLI 311
+ +IQS ++GTSI ++LR+ ++ R +R+M AE+ A + K+T+ ++F +P L+
Sbjct: 256 ASFVTVMIQSQQFGTSIAEALRLYAADMRDKRIMRAEEAANKIPTKMTLGTMMFTVPPLL 315
Query: 312 LVIIGPAILSIIDTM 326
++++GP++ +++
Sbjct: 316 IILVGPSVHDMMENF 330
>gi|86137998|ref|ZP_01056574.1| type II/IV secretion system protein, TadC subfamily protein
[Roseobacter sp. MED193]
gi|85825590|gb|EAQ45789.1| type II/IV secretion system protein, TadC subfamily protein
[Roseobacter sp. MED193]
Length = 326
Score = 238 bits (608), Expect = 9e-61, Method: Composition-based stats.
Identities = 69/274 (25%), Positives = 145/274 (52%)
Query: 52 REILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEY 111
+++ R Q + K + ++ L+ F L + + KLR AG+ S+
Sbjct: 48 KKLQRAQAPETRGKPQKERLRQNNRNEQLQKFASFLEPQNAEELSAMELKLRQAGYHSKD 107
Query: 112 SLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNL 171
++ + ++ + + L LG+ +++ + E+ Q + +I G G+ P W++
Sbjct: 108 AVRLFHFAQMSLGLAGLALGLFYVYVMNAGFEFDTQALMIRIIGPGGAGYMLPKYWVTRR 167
Query: 172 VQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSF 231
+ +R+ I+ +PD+LD++L+CVE+G S+DQ++ RVA ++ L E + E+
Sbjct: 168 IAERKEEIEAGFPDSLDMMLVCVEAGQSLDQSIVRVASELKASYPQLDYEFDIVAHEMKA 227
Query: 232 LPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKA 291
+++ + R + + + +IQS +GTSI ++LRV SE R +R+M AE+ A
Sbjct: 228 GKDKEKVLRDMGTRCGVQDISSFVTVMIQSAAFGTSIAEALRVYASEMRDKRVMRAEEAA 287
Query: 292 ASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDT 325
L K+T+ ++ +P L+++++GP++ +I++
Sbjct: 288 NKLPVKMTLATMMLTVPPLLIILVGPSVKNIMNM 321
>gi|163738365|ref|ZP_02145780.1| type II secretion system protein [Phaeobacter gallaeciensis BS107]
gi|163742218|ref|ZP_02149606.1| type II/IV secretion system protein, TadC subfamily [Phaeobacter
gallaeciensis 2.10]
gi|161384548|gb|EDQ08929.1| type II/IV secretion system protein, TadC subfamily [Phaeobacter
gallaeciensis 2.10]
gi|161388286|gb|EDQ12640.1| type II secretion system protein [Phaeobacter gallaeciensis BS107]
Length = 326
Score = 237 bits (606), Expect = 1e-60, Method: Composition-based stats.
Identities = 84/309 (27%), Positives = 156/309 (50%), Gaps = 13/309 (4%)
Query: 18 ITTAVSIFSLIYAVVIPSLGS-GELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRD 76
+ + +F ++ A+ + L+K KS++ S Q RLR D
Sbjct: 23 VVGLIGLFMILLAIPLLLNQPEDPLKKLQKSMS-----------ASTQTKPKKERLRQAD 71
Query: 77 -SKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWI 135
++ L+ F L + + KLR AG++S+ S+ + + +I L LG+ ++
Sbjct: 72 RNEQLQKFASFLEPQDAAELSKMELKLRQAGYQSKDSVRFFHFAQFALGLIGLALGLFYV 131
Query: 136 FGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVE 195
+ + +EY Q V +I G + P WI+ +++R+ I +PDALD++L+CVE
Sbjct: 132 YVLNADMEYDSQQMVIRIIGPGAAAYMLPKYWITRRIEERKQEITSGFPDALDMMLVCVE 191
Query: 196 SGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNAT 255
+G S+DQA+ RVA+++ L++E + E+ ++ + R + V +
Sbjct: 192 AGQSLDQAIVRVAKELHASYPALADEFDIVAQEMKAGKDKDKVMRDMGTRCGVQDVSSFV 251
Query: 256 QALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVII 315
+IQS +GTSI ++LRV E R +R+M AE+ A L K+T+ + +P L+++++
Sbjct: 252 TVMIQSATFGTSIAEALRVYAGEMRDKRVMRAEEAANKLPTKMTLATMTLTVPPLLIILV 311
Query: 316 GPAILSIID 324
GP+ I +
Sbjct: 312 GPSAQGIAN 320
>gi|146276356|ref|YP_001166515.1| type II secretion system protein [Rhodobacter sphaeroides ATCC
17025]
gi|145554597|gb|ABP69210.1| type II secretion system protein [Rhodobacter sphaeroides ATCC
17025]
Length = 323
Score = 236 bits (603), Expect = 3e-60, Method: Composition-based stats.
Identities = 88/326 (26%), Positives = 150/326 (46%), Gaps = 12/326 (3%)
Query: 4 YFFDLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSL 63
Y D +A+ + I + + + E R+K+ Q T
Sbjct: 10 YLIDSLGPLGPLMAM-GMLGILLIALTLPVMLKKRDEPFDRIKA-----------QRTVG 57
Query: 64 QKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVV 123
+ + R+ ++ L F L K K+ AG+RS+ ++ + +
Sbjct: 58 AAPVSQALRRSSGTEKLDRFANLLEPKTAEELSASRLKMMRAGYRSKGAVRAFHAAQFAL 117
Query: 124 PIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAW 183
+ FL+LG+++ Q V +L G +G+ P WI Q+R I +
Sbjct: 118 GVGFLVLGVLYALLASATAPLTMQQMVIYTLLPGAIGYYLPVYWIKRRAQERHDQIVAGF 177
Query: 184 PDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFY 243
PDALD++L+CVE+G S+DQ++ RVA + L+EE + E+ R ++
Sbjct: 178 PDALDMMLVCVEAGQSLDQSILRVARESASGYPALAEEFEMVAHEVKAGKERVAVLKDMA 237
Query: 244 NRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMI 303
R + V + LIQS +GTSI ++LRV SE R +R+M AE+KA +L KLT+ +
Sbjct: 238 ERVGIPDVSSFVTTLIQSATFGTSIAEALRVYSSEMRDKRVMRAEEKANTLPTKLTLGTM 297
Query: 304 IFFLPVLILVIIGPAILSIIDTMKDH 329
+ +P L+L++IGP++ I +
Sbjct: 298 LLTVPPLMLILIGPSVYGIATQLGGQ 323
>gi|83943934|ref|ZP_00956391.1| type II/IV secretion system protein, TadC subfamily protein
[Sulfitobacter sp. EE-36]
gi|83954507|ref|ZP_00963218.1| type II/IV secretion system protein, TadC subfamily protein
[Sulfitobacter sp. NAS-14.1]
gi|83840791|gb|EAP79962.1| type II/IV secretion system protein, TadC subfamily protein
[Sulfitobacter sp. NAS-14.1]
gi|83845181|gb|EAP83061.1| type II/IV secretion system protein, TadC subfamily protein
[Sulfitobacter sp. EE-36]
Length = 305
Score = 236 bits (602), Expect = 4e-60, Method: Composition-based stats.
Identities = 80/311 (25%), Positives = 147/311 (47%), Gaps = 14/311 (4%)
Query: 16 VAITTAVSIFSLIYAVVIPSLGS-GELEKRMKSVAVEREILRKQQITSLQKDSASSRLRT 74
+AI A+ + + +V+ L K K+ T RLR
Sbjct: 4 IAILGALGLTMVGATLVMILRQPEDPLAKL------------KRSQTEAADAGKQQRLRQ 51
Query: 75 RD-SKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGII 133
D ++ L+ F K L + + LR AG+ S ++ ++ + I L++G +
Sbjct: 52 SDRNEKLQKFAKFLEPEDVEELSAKALLLRQAGYSSRDAVRFFHFAQMALGIAGLVIGTV 111
Query: 134 WIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLIC 193
+I + + G +G+ P W++ V +R+ I R +PDALD++L+C
Sbjct: 112 YINFLGGGEGMTTNKMMLYTVGPGGIGYFLPRYWVTRRVAERKEEITRGFPDALDMMLVC 171
Query: 194 VESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRN 253
VE+G S+DQ + RVA ++ L+EE + E+ ++ R + V +
Sbjct: 172 VEAGQSLDQCIVRVARELRASYPALAEEFEIVAYEMKAGKDKVSVLNAMGERCGVQDVSS 231
Query: 254 ATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILV 313
L+QS +GTSI D+LRV +E R +R+M AE+ A L K+T+ ++ +P L+++
Sbjct: 232 FVTVLVQSAAFGTSIADALRVYAAEMRDKRVMRAEEAANKLPTKMTLATMMLTVPPLLII 291
Query: 314 IIGPAILSIID 324
++ P++++I
Sbjct: 292 LVAPSVMNITK 302
>gi|254511547|ref|ZP_05123614.1| type II/IV secretion system protein, TadC subfamily
[Rhodobacteraceae bacterium KLH11]
gi|221535258|gb|EEE38246.1| type II/IV secretion system protein, TadC subfamily
[Rhodobacteraceae bacterium KLH11]
Length = 325
Score = 235 bits (601), Expect = 6e-60, Method: Composition-based stats.
Identities = 80/305 (26%), Positives = 149/305 (48%), Gaps = 5/305 (1%)
Query: 19 TTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSK 78
V I L +V L + E +K + + + ++ +SR ++
Sbjct: 21 LIVVGILGLFMILVTIPLMLNQPEDPLKKLQKSNSAPKNNKKEKKERLRTASR-----NE 75
Query: 79 SLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGY 138
L F L K + KLR AG++S+ ++ + + I+ +++G+ + +
Sbjct: 76 QLEKFANFLEPKDQEEYSAVQLKLRQAGYQSKDAVRFYHFAQFALGIVGILIGVSLVTVF 135
Query: 139 DKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGI 198
E+ + V++ G VG+ P WI+ V++R+ +I +PD LDL+L+CVE+G
Sbjct: 136 AGDQEFDSTQLLIRVLVPGVVGYFVPKYWITRRVEERKEAIVNGFPDTLDLMLVCVEAGQ 195
Query: 199 SIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQAL 258
S+DQA+ RVA ++ ++ E + E+ + +F R + V +
Sbjct: 196 SLDQAIVRVAAEMKASYPDIALEFEVVAYEMKAGKEKDTVLRDFATRCGVQDVSAFVTVM 255
Query: 259 IQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPA 318
IQS +GTSI D+LRV E R +R+M AE+ A L K+T+ ++ +P L+++++GP+
Sbjct: 256 IQSAAFGTSIADALRVYSDEMRDKRVMRAEEAANKLPTKMTLATMMLTVPPLLVILVGPS 315
Query: 319 ILSII 323
I+
Sbjct: 316 AKGIM 320
>gi|307293454|ref|ZP_07573300.1| Type II secretion system F domain protein [Sphingobium
chlorophenolicum L-1]
gi|306881520|gb|EFN12736.1| Type II secretion system F domain protein [Sphingobium
chlorophenolicum L-1]
Length = 330
Score = 234 bits (598), Expect = 1e-59, Method: Composition-based stats.
Identities = 100/295 (33%), Positives = 160/295 (54%)
Query: 32 VIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKA 91
+ KR+K++ RE L+ S + A + + + +R+ + L +
Sbjct: 36 YAVMTVRDPMAKRVKALNERREQLKAGITASTARRRAKLVKKNQATDQMRSLLSSLKVLQ 95
Query: 92 ILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVG 151
+ KL AG RS+ ++ R+++PI + + ++ E+ R
Sbjct: 96 DDQLKEAQIKLAQAGIRSKDWAVAVIFGRMILPIAIGGMAALLLYAVGIFPEWGGAKRFM 155
Query: 152 AVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDI 211
A + + AP ++I N VQKR ++I++ PDALDLL+IC E+G+++D A RVA ++
Sbjct: 156 AFAAALLLSYKAPDLFIDNKVQKRSAAIRKGLPDALDLLVICAEAGLTVDAAFSRVAREL 215
Query: 212 GGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDS 271
G L +E LT ELSFL R++AFEN R ++D V+ +IQ+++YGT + +
Sbjct: 216 GKAYPELGDEFHLTAIELSFLTERRMAFENLATRVKLDAVKGVVTTMIQTEKYGTPLASA 275
Query: 272 LRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
LRVL +E R ER+M AE+KAA L +TVP+I+F LP L +VI+GPA SI
Sbjct: 276 LRVLSAEFRHERMMRAEEKAARLPAIMTVPLILFILPTLFVVILGPAACSISKAF 330
>gi|163733537|ref|ZP_02140980.1| type II/IV secretion system protein, TadC subfamily, putative
[Roseobacter litoralis Och 149]
gi|161393325|gb|EDQ17651.1| type II/IV secretion system protein, TadC subfamily, putative
[Roseobacter litoralis Och 149]
Length = 327
Score = 234 bits (597), Expect = 1e-59, Method: Composition-based stats.
Identities = 72/269 (26%), Positives = 138/269 (51%), Gaps = 1/269 (0%)
Query: 57 KQQITSLQKDSASSRLRT-RDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNI 115
K+QI + + RLR ++ L+ F L + + LR AG++S+ ++
Sbjct: 51 KKQIQTPGSSAPEQRLRQGERNEQLQKFASFLEPQDVAELSARQLMLRQAGYQSQDAVRF 110
Query: 116 LLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKR 175
+ + + L+L +++ + Q + I+ G VG+ P W+ V R
Sbjct: 111 FHFAQFALGLAGLLLAFVYLNLLGHGEGFTTQKMMIYTIIPGAVGYYLPVYWVRRRVDTR 170
Query: 176 QSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNR 235
+ I R +PD+LD++L+CVE+G S+DQ + RV++++ L++E + E+ ++
Sbjct: 171 KDEITRGFPDSLDMMLVCVEAGQSLDQCIVRVSKELHASYPALAQEFDVVAYEMKAGKDK 230
Query: 236 QVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLG 295
+F R + V + L QS ++GTSI ++LRV E R +R+M AE+ A L
Sbjct: 231 TTVLNDFGERCGVQDVSSFVTVLNQSQQFGTSIAEALRVYAGEMRDKRVMRAEEAANKLP 290
Query: 296 PKLTVPMIIFFLPVLILVIIGPAILSIID 324
K+T+ ++ +P L+++++GP++ I
Sbjct: 291 TKMTLATMMLTVPPLLIILVGPSVHGITQ 319
>gi|224824220|ref|ZP_03697328.1| type II secretion system protein [Lutiella nitroferrum 2002]
gi|224603639|gb|EEG09814.1| type II secretion system protein [Lutiella nitroferrum 2002]
Length = 314
Score = 234 bits (597), Expect = 2e-59, Method: Composition-based stats.
Identities = 83/319 (26%), Positives = 154/319 (48%), Gaps = 14/319 (4%)
Query: 9 FDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSA 68
+ ++ V++F + + + + ++ R+ ++ T DS
Sbjct: 1 MNTSQWIYLGIIFVAVFGVALTISM-QIAPNRVKARLDKISE----------TETPIDSD 49
Query: 69 SSRLRTRDSKSLRNFVKKLN-LKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIF 127
S+ + + + KL+ I + AG+R + ++ + + + ++F
Sbjct: 50 SASAWVAKAVKIATPLAKLSVPAEGWETSPIRIRFMNAGYRGQSAVPLFFGAKTFLALLF 109
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
+ +++ + L +L +G+ P++ +S V+ RQ I +PDA+
Sbjct: 110 PTILFLYLGLTGGHKDGTNFLLFM--LLAAGIGYYLPNILLSRRVENRQREIFNNFPDAI 167
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQ 247
DLLL+CVE+G+ +D AL +V E++ +S L++E+ L EL ++ A N RT
Sbjct: 168 DLLLVCVEAGLGLDAALLKVGEEMRIKSPILADELHLVNLELRAGSTKERALRNLAIRTG 227
Query: 248 MDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFL 307
+ V LIQSDR+GTSIG+SLRV + R++R + AE+ AA + KL P+I
Sbjct: 228 VQEVDTLVAMLIQSDRFGTSIGESLRVHADDLRTKRRLRAEEAAAKIPLKLLFPLIFCIF 287
Query: 308 PVLILVIIGPAILSIIDTM 326
P L+LV++GPA + I +
Sbjct: 288 PALLLVLLGPAFIQIYRVL 306
>gi|94309584|ref|YP_582794.1| type II secretion system protein [Cupriavidus metallidurans CH34]
gi|93353436|gb|ABF07525.1| Bacterial type II secretion system protein, probably involved in
Flp pilus synthesis [Cupriavidus metallidurans CH34]
Length = 323
Score = 234 bits (597), Expect = 2e-59, Method: Composition-based stats.
Identities = 88/319 (27%), Positives = 157/319 (49%), Gaps = 12/319 (3%)
Query: 9 FDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSA 68
F A +L V V+ F + V+ + RM+ +A E ++ ++
Sbjct: 8 FRADQLIVLALVFVAAFGTVLGVLY-VFSPDRMRGRMEQIASE--------TGTVPGNAG 58
Query: 69 SSRLRTRDSKSLRNFVKKLNL-KAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIF 127
+ V +L+L K + + + AG+R + + + ++ +
Sbjct: 59 QQQAWVEKLVKWAQPVSRLSLPKEGWENSQLRVRFMNAGWRDASAAPLYFAAKTLLAVAL 118
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
++G+I E V AV+ +G+ P++ +S V RQ ++ +PD +
Sbjct: 119 PMIGLIATSSVPAFQEQSTTFAVLAVL--AAIGYYIPNIVLSRKVTARQRTVFEEFPDVI 176
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQ 247
DLL +CVE+G+ +D AL RVA+++ + L++E+ L + EL +++ A N RT
Sbjct: 177 DLLTVCVEAGLGLDAALMRVADELALRCPVLADELQLMLLELRSGFSKEKALSNLSLRTG 236
Query: 248 MDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFL 307
++ V LIQ+DR+GTS+G+SLRVL R++R M AE++AA + KL P+I
Sbjct: 237 VEDVDKFASMLIQADRFGTSLGESLRVLSDMLRTKRRMRAEEQAAKIALKLLFPLIFTIF 296
Query: 308 PVLILVIIGPAILSIIDTM 326
P L+LV++GPA + I +
Sbjct: 297 PTLLLVLLGPAFIQIYRVL 315
>gi|56697924|ref|YP_168295.1| TadC family type II/IV secretion system protein [Ruegeria pomeroyi
DSS-3]
gi|56679661|gb|AAV96327.1| type II/IV secretion system protein, TadC subfamily [Ruegeria
pomeroyi DSS-3]
Length = 326
Score = 234 bits (596), Expect = 2e-59, Method: Composition-based stats.
Identities = 80/306 (26%), Positives = 157/306 (51%), Gaps = 6/306 (1%)
Query: 19 TTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSK 78
AV + L ++ L + E +K + R+ +L K ++ ++
Sbjct: 21 LIAVGVLGLFMVLLAVPLLMSQPEDPLKKL------KREMNPNTLAKPKKEQLRQSGRNE 74
Query: 79 SLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGY 138
L+ F L + + KLR AG++S+ ++ ++ + ++ L+LG++++F
Sbjct: 75 QLQRFANFLEPQDADELSAMQLKLRQAGYQSKDAVRFFHFAQMALGLVGLVLGVLYVFVI 134
Query: 139 DKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGI 198
+ + Q + V+ G + P WI+ V R+ +I RA+PDALD+LL+CVE+G
Sbjct: 135 EADKDLDGQAMLIRVLGPGGAAYFLPRYWITRRVDTRKENITRAFPDALDMLLVCVEAGQ 194
Query: 199 SIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQAL 258
S+DQ++ RV++++ L++E + E+ + + R + V + +
Sbjct: 195 SLDQSIVRVSKELRASYPDLADEFEMVAYEMKAGKEKDKVLRDMGTRCGVVDVSSFVTVM 254
Query: 259 IQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPA 318
IQS ++GTSI ++LRV E R +R+M AE+ A L K+T+ ++ +P L+++++GP+
Sbjct: 255 IQSSQFGTSIAEALRVYAGEMRDKRVMRAEEAANKLPTKMTLATMMLTVPPLLIILVGPS 314
Query: 319 ILSIID 324
I+D
Sbjct: 315 AKGIMD 320
>gi|292491527|ref|YP_003526966.1| type II secretion system protein [Nitrosococcus halophilus Nc4]
gi|291580122|gb|ADE14579.1| type II secretion system protein [Nitrosococcus halophilus Nc4]
Length = 320
Score = 234 bits (596), Expect = 2e-59, Method: Composition-based stats.
Identities = 85/317 (26%), Positives = 150/317 (47%), Gaps = 17/317 (5%)
Query: 12 TELAVAITTAVSI-FSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASS 70
T A+ V+ ++ +++ + S + +R++S+A RK +
Sbjct: 18 TTWFFAVIMGVATTLFVLALLLLVAGLSDPVRRRLRSIANSGHHDRKTTDAVAE------ 71
Query: 71 RLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLIL 130
++ + + KL AG+RS +L + ++L+ II +
Sbjct: 72 --------AIAPLSPYILPRQEWERSKTTTKLVHAGYRSGNALTLFYAIKLLSGIILPAI 123
Query: 131 GIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLL 190
I + ++ V + + ++G P++ + L++KRQ I +PD LDLL
Sbjct: 124 AIFLTTIF--YPKFTTFQIVFLGLFLSFIGLLFPNIVLERLIKKRQRQIYNGFPDVLDLL 181
Query: 191 LICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDC 250
+ C E+G+ ++ AL+RVAE+ LS E+ L E+ NR A +NF R ++
Sbjct: 182 ITCTEAGLGLNAALKRVAEECAVSHPVLSGELTLVNMEIRAGVNRVEALKNFSARAGIEE 241
Query: 251 VRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVL 310
+ + L QS R+GTSI D+LR+ E R +R+ AE+ AA +G K+ P+I LP
Sbjct: 242 IHSFVAFLSQSLRFGTSIADTLRIYSDEFRDKRMQRAEEMAAKMGTKMIFPLIFCILPSF 301
Query: 311 ILVIIGPAILSIIDTMK 327
LV IGPA+L ++ +
Sbjct: 302 FLVAIGPAVLGVLKALG 318
>gi|283779212|ref|YP_003369967.1| type II secretion system protein [Pirellula staleyi DSM 6068]
gi|283437665|gb|ADB16107.1| type II secretion system protein [Pirellula staleyi DSM 6068]
Length = 329
Score = 233 bits (594), Expect = 4e-59, Method: Composition-based stats.
Identities = 93/323 (28%), Positives = 159/323 (49%), Gaps = 6/323 (1%)
Query: 6 FDLFDATELAVAITTAVSIFSLIYAVVIPS--LGSGELEKRMKSVAVEREILRKQQITSL 63
F F A+ I +++F LI A+V + S + + + ++ + +++
Sbjct: 3 FTTFFASLQLSPIMVQIAVFGLIAALVWVAVDFFSARNSRAEQRLEDYKDPIARKRREEA 62
Query: 64 QKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVV 123
K S + + K L K N+ KL AGFR E + I L + V
Sbjct: 63 AKKGGSDAMTRMLEAASPALAKPLQPKTAKEATNLKMKLSYAGFRGEGAPQIFLGAKFVC 122
Query: 124 PIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAW 183
II L LG G + Q + V+LI F P + L +KR+ SI
Sbjct: 123 LIIGLFLGG----GTTVAIMGLSQGALMRVVLIAGGMFYFPDGIVWWLGRKRKESIFLGL 178
Query: 184 PDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFY 243
PDALDL+++CVE+G+ +DQA+R+V+E++ ++EE L +L R +
Sbjct: 179 PDALDLMVVCVEAGLGLDQAMRKVSEEMRKSYRVIAEEFSLCNLQLQMGRGRTQVLQELG 238
Query: 244 NRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMI 303
+R+ +D +++ + LIQ+D++G+SI +LRV R+ R AE+KAA KL P++
Sbjct: 239 SRSGVDDLKSLSSILIQADKFGSSIAQALRVQSDAMRTRRRQIAEEKAAKTAVKLIFPLV 298
Query: 304 IFFLPVLILVIIGPAILSIIDTM 326
+F P + +V++GPA ++++ M
Sbjct: 299 LFIFPGIFVVLVGPAAITMVREM 321
>gi|113866736|ref|YP_725225.1| flp pilus assembly protein TadC [Ralstonia eutropha H16]
gi|113525512|emb|CAJ91857.1| flp pilus assembly protein TadC [Ralstonia eutropha H16]
Length = 324
Score = 232 bits (593), Expect = 4e-59, Method: Composition-based stats.
Identities = 91/319 (28%), Positives = 157/319 (49%), Gaps = 12/319 (3%)
Query: 9 FDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSA 68
F A + V V+ F ++ V+ L R + +A Q L D
Sbjct: 8 FQADQFVVLALIFVAAFGTVFGVLY-VFSPNRLRGRAEQIAG--------QAGQLGADPG 58
Query: 69 SSRLRTRDSKSLRNFVKKLNL-KAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIF 127
V +L+L K + + AG+R+ + + + V+ I
Sbjct: 59 KQNPLYEKLVQWAQPVSRLSLPKEGWESSQLRVRFMNAGWRNASAAPLYFAAKTVLAIAL 118
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
++G++ G L + + AV+ G +G+ P+V ++ V +RQ ++ +PD +
Sbjct: 119 PMIGLLAAAGQPGLQDRNIMFALLAVL--GAIGYYLPNVVLARKVAQRQRTVFEEFPDVI 176
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQ 247
DLL +CVE+G+ +D AL RVA+++ + L++E+ L + EL +++ A N RT
Sbjct: 177 DLLTVCVEAGLGLDAALMRVADELALRCPVLADELQLMLLELRSGFSKEKALSNLSLRTG 236
Query: 248 MDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFL 307
++ V LIQ+DR+GTS+G+SLRVL R++R M AE++AA + KL P+I
Sbjct: 237 VEDVDKFASMLIQADRFGTSLGESLRVLSDMLRTKRRMRAEEQAAKIALKLLFPLIFTIF 296
Query: 308 PVLILVIIGPAILSIIDTM 326
P L+LV++GPA + I +
Sbjct: 297 PSLLLVLLGPAFIQIYRVL 315
>gi|332560332|ref|ZP_08414654.1| Type II secretion system protein [Rhodobacter sphaeroides WS8N]
gi|332278044|gb|EGJ23359.1| Type II secretion system protein [Rhodobacter sphaeroides WS8N]
Length = 326
Score = 232 bits (592), Expect = 6e-59, Method: Composition-based stats.
Identities = 93/322 (28%), Positives = 152/322 (47%), Gaps = 6/322 (1%)
Query: 8 LFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDS 67
L D + S+ L+ A+ +P + L+KR++ R +QK
Sbjct: 11 LTDRLGPLGPLIAVGSLGILLIALTLPVM----LKKRVEPFDRIRAQRTAAVAAPVQKGQ 66
Query: 68 ASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIF 127
A R S+ L F L K K+ AG+RS+ ++ + + + F
Sbjct: 67 A--LRRASGSEKLDRFANLLEPKTAEEMSASRLKMMRAGYRSKGAVRAFHAAQFALGVGF 124
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
L+ G+++ Q V IL G +G+ P WI Q+R I +PDAL
Sbjct: 125 LVAGLLYAMVASAAAPLTMQQMVLYTILPGAIGYYLPVYWIKRRAQERYDQIVSGFPDAL 184
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQ 247
D++L+CVE+G S+DQ++ RVA + L+EE + E+ R ++ R
Sbjct: 185 DMMLVCVEAGQSLDQSILRVARESAAGYPALAEEFEMVAHEVKAGKERVAVLKDMSERVG 244
Query: 248 MDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFL 307
+ V + LIQS +GTSI ++LRV SE R +R+M AE+KA +L KLT+ ++ +
Sbjct: 245 IPDVSSFVTTLIQSATFGTSIAEALRVYSSEMRDKRVMRAEEKANTLPTKLTLGTMLLTV 304
Query: 308 PVLILVIIGPAILSIIDTMKDH 329
P L+L++IGP++ I +
Sbjct: 305 PPLMLILIGPSVYGIATQLGGQ 326
>gi|77462448|ref|YP_351952.1| putative Flp pilus assembly protein TadC [Rhodobacter sphaeroides
2.4.1]
gi|77386866|gb|ABA78051.1| Putative Flp pilus assembly protein TadC [Rhodobacter sphaeroides
2.4.1]
Length = 326
Score = 232 bits (592), Expect = 6e-59, Method: Composition-based stats.
Identities = 93/322 (28%), Positives = 151/322 (46%), Gaps = 6/322 (1%)
Query: 8 LFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDS 67
L D + S+ L+ A+ +P + L+KR++ R +QK
Sbjct: 11 LTDRLGPLGPLIAVGSLGILLIALTLPVM----LKKRVEPFDRIRAQRTAAVAAPVQKGQ 66
Query: 68 ASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIF 127
A R S+ L F L K K+ AG+RS+ ++ + + + F
Sbjct: 67 A--LRRASGSEKLDRFANLLEPKTAEEMSASRLKMMRAGYRSKGAVRAFHAAQFALGVGF 124
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
L G+++ Q V IL G +G+ P WI Q+R I +PDAL
Sbjct: 125 LAAGLLYAMVASAAAPLTMQQMVLYTILPGAIGYYLPVYWIKRRAQERYDQIVSGFPDAL 184
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQ 247
D++L+CVE+G S+DQ++ RVA + L+EE + E+ R ++ R
Sbjct: 185 DMMLVCVEAGQSLDQSILRVARESAAGYPALAEEFEIVAHEVKAGKERVAVLKDMSERVG 244
Query: 248 MDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFL 307
+ V + LIQS +GTSI ++LRV SE R +R+M AE+KA +L KLT+ ++ +
Sbjct: 245 IPDVSSFVTTLIQSATFGTSIAEALRVYSSEMRDKRVMRAEEKANTLPTKLTLGTMLLTV 304
Query: 308 PVLILVIIGPAILSIIDTMKDH 329
P L+L++IGP++ I +
Sbjct: 305 PPLMLILIGPSVYGIATQLGGQ 326
>gi|84516638|ref|ZP_01003997.1| type II/IV secretion system protein, TadC subfamily [Loktanella
vestfoldensis SKA53]
gi|84509674|gb|EAQ06132.1| type II/IV secretion system protein, TadC subfamily [Loktanella
vestfoldensis SKA53]
Length = 316
Score = 232 bits (592), Expect = 7e-59, Method: Composition-based stats.
Identities = 74/312 (23%), Positives = 148/312 (47%), Gaps = 13/312 (4%)
Query: 16 VAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTR 75
+ + V F ++ + + + R+K+ + +
Sbjct: 18 LMVIGLVGFFMILLTLPVVFRRKQDPLDRLKA-------------ANRPTNKTERLRAAS 64
Query: 76 DSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWI 135
+L + L + + KL +G+RS+ ++ I V+ + I L G I+
Sbjct: 65 SKDTLEKYSNFLEPQNAAEYSAVKLKLLQSGYRSKNAVRIYHFVQFALGITGLFGGGIYS 124
Query: 136 FGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVE 195
Q + +++ G +G+ P W++ V+ R+ +I A+PD+LDL+L+CVE
Sbjct: 125 LIEMAQRTVNTQELIMMILVPGGIGYMFPKYWVTRRVEVRKEAIINAFPDSLDLMLVCVE 184
Query: 196 SGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNAT 255
+G S+DQ++ RV+ ++ L+EE + E ++ ++ R + + +
Sbjct: 185 AGQSLDQSILRVSNELRTGFPELAEEFEIVSQEAKAGKDKTTVLKDMAERCGVPDISSFV 244
Query: 256 QALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVII 315
++QS ++GTSI D+LRV SE R +R+M AE+ A L K+T+ ++ +P L+ ++I
Sbjct: 245 TVMVQSAQFGTSISDALRVYASEMRDKRVMRAEEAANKLPTKMTLATMMLTVPPLMAILI 304
Query: 316 GPAILSIIDTMK 327
GP+I +I ++
Sbjct: 305 GPSIYAITTSLG 316
>gi|21673275|ref|NP_661340.1| TadC protein [Chlorobium tepidum TLS]
gi|21646364|gb|AAM71682.1| TadC protein [Chlorobium tepidum TLS]
Length = 312
Score = 232 bits (591), Expect = 8e-59, Method: Composition-based stats.
Identities = 82/324 (25%), Positives = 165/324 (50%), Gaps = 14/324 (4%)
Query: 8 LFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDS 67
+ DA + + + ++ S+++A+ L S ++KR+ + +R D
Sbjct: 1 MLDALQFLTIVLSGAAVASVVFALYNWWL-SNTVKKRLSQIVRQRW---------APADV 50
Query: 68 ASSRLRTRDS-KSLRNFVKKLNL-KAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPI 125
AS R T ++ N + KL+L + + + AG R++ + V+ ++
Sbjct: 51 ASPRKPTPQKIDTVINILSKLSLPEEGWQSSTVRTRFLQAGIRNKNAPQYYYAVKTLLVF 110
Query: 126 IFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPD 185
++ +++F + P L + ++L G+ P + + + +KR ++ + PD
Sbjct: 111 GLPVM--LFLFLRFAQPKLPVILFLIFMLLSAAAGYYLPEIVMDFITKKRVERMRNSLPD 168
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
++L+++C ESG+SID A+ R+++++ L++E L E+ R + N R
Sbjct: 169 MIELMVVCTESGMSIDAAIARISQEMARTHPDLAQEFYLAGLEMRAGATRIDSLRNMALR 228
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
T +D + + LIQ++++GTS+ +SLRV R++R AE+ AA + KL +P+ +F
Sbjct: 229 TSLDELHDLVSMLIQAEKFGTSMAESLRVQSEVMRTKRTQRAEELAAKIPVKLVLPLGLF 288
Query: 306 FLPVLILVIIGPAILSIIDTMKDH 329
P L++V++GPAIL +ID +K
Sbjct: 289 IFPTLLIVMLGPAILQLIDVLKHK 312
>gi|194335919|ref|YP_002017713.1| type II secretion system protein [Pelodictyon phaeoclathratiforme
BU-1]
gi|194308396|gb|ACF43096.1| type II secretion system protein [Pelodictyon phaeoclathratiforme
BU-1]
Length = 316
Score = 231 bits (590), Expect = 1e-58, Method: Composition-based stats.
Identities = 85/318 (26%), Positives = 166/318 (52%), Gaps = 11/318 (3%)
Query: 13 ELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRL 72
++ + + ++ SL++A++ + + L+KR+ + + R TSL K + + ++
Sbjct: 6 QILTIVLSGAAVASLVFALLNWLVDNNALKKRLTKIIRQS---RAPAATSLSKTANTGKV 62
Query: 73 RTRDSKSLRNFVKKLNL-KAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILG 131
T + N + KL+L + + K AG R++ + V+ + ++ +
Sbjct: 63 AT-----VINILSKLSLPEEGWQSSGVQIKFLQAGIRNKNAPQNFFAVKTLFTLVLPV-- 115
Query: 132 IIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLL 191
++ +F + P + V+ G+ P + + + Q R ++ + PD LDL++
Sbjct: 116 VLALFLHFTQPLMPLARVMILVLFTAAAGYYLPEMLLRFITQNRIERMRNSLPDMLDLMV 175
Query: 192 ICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCV 251
+C ESG+ ID A+ R++ ++ + L+EE L+ E+ NR A N R+++D +
Sbjct: 176 VCTESGMGIDAAIARISREMVRTNPDLAEEFYLSTLEMRAGANRIDALRNLALRSRLDDL 235
Query: 252 RNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLI 311
+N L+Q+DR+GTS+ DSLRV R+ R AE+ AA + K+T+P+++F PVL+
Sbjct: 236 QNLVSVLVQADRFGTSLVDSLRVHSDMMRTCRTQRAEELAAKIPVKMTLPLVLFIFPVLM 295
Query: 312 LVIIGPAILSIIDTMKDH 329
LV++GPAI+ +I
Sbjct: 296 LVLLGPAIIQVIQIFSQK 313
>gi|126461326|ref|YP_001042440.1| type II secretion system protein [Rhodobacter sphaeroides ATCC
17029]
gi|221638311|ref|YP_002524573.1| Type II secretion system protein [Rhodobacter sphaeroides KD131]
gi|126102990|gb|ABN75668.1| type II secretion system protein [Rhodobacter sphaeroides ATCC
17029]
gi|221159092|gb|ACM00072.1| Type II secretion system protein [Rhodobacter sphaeroides KD131]
Length = 326
Score = 231 bits (590), Expect = 1e-58, Method: Composition-based stats.
Identities = 93/322 (28%), Positives = 151/322 (46%), Gaps = 6/322 (1%)
Query: 8 LFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDS 67
L D + S+ L+ A+ +P + L+KR++ R +QK
Sbjct: 11 LTDRLGPLGPLIAVGSLGILLIALTLPVM----LKKRVEPFDRIRAQRTAAVAAPVQKGQ 66
Query: 68 ASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIF 127
A R S+ L F L K K+ AG+RS+ ++ + + + F
Sbjct: 67 A--LRRASGSEKLDRFANLLEPKTAEEMSASRLKMMRAGYRSKGAVRAFHAAQFALGVGF 124
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
L G+++ Q V IL G +G+ P WI Q+R I +PDAL
Sbjct: 125 LAAGLLYAMVASAAAPLTMQQMVLYTILPGAIGYYLPVYWIKRRAQERYDQIVSGFPDAL 184
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQ 247
D++L+CVE+G S+DQ++ RVA + L+EE + E+ R ++ R
Sbjct: 185 DMMLVCVEAGQSLDQSILRVARESAAGYPALAEEFEMVAHEVKAGKERVAVLKDMSERVG 244
Query: 248 MDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFL 307
+ V + LIQS +GTSI ++LRV SE R +R+M AE+KA +L KLT+ ++ +
Sbjct: 245 IPDVSSFVTTLIQSATFGTSIAEALRVYSSEMRDKRVMRAEEKANTLPTKLTLGTMLLTV 304
Query: 308 PVLILVIIGPAILSIIDTMKDH 329
P L+L++IGP++ I +
Sbjct: 305 PPLMLILIGPSVYGIATQLGGQ 326
>gi|114764951|ref|ZP_01444124.1| Putative Flp pilus assembly protein TadC [Pelagibaca bermudensis
HTCC2601]
gi|114542663|gb|EAU45687.1| Putative Flp pilus assembly protein TadC [Roseovarius sp. HTCC2601]
Length = 323
Score = 231 bits (589), Expect = 1e-58, Method: Composition-based stats.
Identities = 81/309 (26%), Positives = 159/309 (51%), Gaps = 13/309 (4%)
Query: 18 ITTAVSIFSLIYAVVIPSLGS--GELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTR 75
+ A F LI A + L ++K KS + ++ + R
Sbjct: 20 MVVAGLAFLLIVAAIPLMLAGKPDPMDKLAKS-----------GRDRVDAETKAILRDKR 68
Query: 76 DSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWI 135
+ L + + L K+ + KL AG+R+ ++ + + ++V+ + L+ G+ +
Sbjct: 69 KNAKLNKYAQYLEPKSAEELGEVRMKLLQAGYRTRDAVRLYYLAQMVLGLGLLVAGLTYY 128
Query: 136 FGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVE 195
+ E Q ++ +IL G +G+ AP WI+ V++R+ I+ +PDALD++L+CVE
Sbjct: 129 LMFIDGPESTMQQKLMYIILPGALGYLAPKYWITKRVEERKKQIEEGFPDALDMMLVCVE 188
Query: 196 SGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNAT 255
+G S+DQ++ RV+++I L++E + E+ ++ + R + V +
Sbjct: 189 AGQSLDQSIVRVSKEIRASYAALADEFEIISHEMKAGKDKASVLNDMGERCGVADVSSFV 248
Query: 256 QALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVII 315
L Q+ +GTSI D+LR+ SE R +R+M AE+KA L K+T+ ++ +P L+++++
Sbjct: 249 TVLNQASTFGTSIADALRIYASEMRDKRVMRAEEKANKLPTKMTLTTMMLTVPPLLIILV 308
Query: 316 GPAILSIID 324
GP++++I
Sbjct: 309 GPSVVNITK 317
>gi|260574611|ref|ZP_05842614.1| type II secretion system protein [Rhodobacter sp. SW2]
gi|259023028|gb|EEW26321.1| type II secretion system protein [Rhodobacter sp. SW2]
Length = 326
Score = 231 bits (589), Expect = 1e-58, Method: Composition-based stats.
Identities = 85/275 (30%), Positives = 146/275 (53%)
Query: 53 EILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYS 112
E L+ Q+ T ++ + L+ F L + K+ AG+R++ S
Sbjct: 48 EKLKAQRTTGTAATPGAALRLGDKADKLQKFANFLEPQDEAELSASRLKMLRAGYRAKNS 107
Query: 113 LNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLV 172
+ + +LV+ I L+LG+I+ Q + + I G VG+ P W+++ V
Sbjct: 108 VRMFHFAQLVLGIGLLVLGVIYTLFMSAQGTVSTQTMILSTIGPGAVGYYLPQYWVNSRV 167
Query: 173 QKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFL 232
+KRQ+ I +PDALD++L+CVE+G S+DQ++ RVA + L++E + E+
Sbjct: 168 KKRQAEIVSGFPDALDMMLVCVEAGQSMDQSIIRVARESRAGYPALADEFDMVAQEIKAG 227
Query: 233 PNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAA 292
R + R + V + L+QS +GTSI ++LRV +E R +R+M AE+KA
Sbjct: 228 KERTTVMRDMSERVGIADVASFVTTLVQSATFGTSIAEALRVYSAEMRDKRVMRAEEKAN 287
Query: 293 SLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
+L KLT+ ++F LP L++++IGP+I +I T+
Sbjct: 288 TLPTKLTLGTMLFTLPPLLIILIGPSIHNIAVTLS 322
>gi|148976656|ref|ZP_01813343.1| putative tight adherence TadC-related transmembrane protein
[Vibrionales bacterium SWAT-3]
gi|145964007|gb|EDK29265.1| putative tight adherence TadC-related transmembrane protein
[Vibrionales bacterium SWAT-3]
Length = 323
Score = 230 bits (587), Expect = 2e-58, Method: Composition-based stats.
Identities = 67/296 (22%), Positives = 131/296 (44%), Gaps = 19/296 (6%)
Query: 32 VIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKA 91
+ L+K++K +A ++ASSR + +L + +
Sbjct: 41 FLFVGARSPLDKKLKQIAG--------------GNNASSRKPYDFANTLESLTPFIGRGN 86
Query: 92 ILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVG 151
+E KL AG+ + +L++ ++++ +I + + + L
Sbjct: 87 QKDNETYSEKLMHAGYHEKSALSVFYALKILSMLIGFVCAFVVFY-----LSIGGSYNNL 141
Query: 152 AVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDI 211
+I +VG P+ ++ + ++RQ I+ PDALDLL++C ESG+ + AL RVA ++
Sbjct: 142 LIITCIFVGTFLPNFLLNKMQKERQRKIRNGVPDALDLLVVCTESGLGFNAALGRVANEL 201
Query: 212 GGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDS 271
L++E+ A++ A RT + + L + R G S+ +
Sbjct: 202 YISQPELADELDTVCAKIQAGVTMPDALTQLVERTGLHELEGLVSLLSHASRMGGSLAQT 261
Query: 272 LRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
LR + R +R AE+ AA + K+ PM++F P +V +GP ++ ++D +
Sbjct: 262 LRDYTDDFRDKRQQAAEEIAAKIPTKMLFPMLLFIWPCFFIVALGPGMMIVMDALS 317
>gi|163745841|ref|ZP_02153200.1| type II/IV secretion system protein, TadC subfamily, putative
[Oceanibulbus indolifex HEL-45]
gi|161380586|gb|EDQ04996.1| type II/IV secretion system protein, TadC subfamily, putative
[Oceanibulbus indolifex HEL-45]
Length = 326
Score = 230 bits (587), Expect = 2e-58, Method: Composition-based stats.
Identities = 81/311 (26%), Positives = 144/311 (46%), Gaps = 12/311 (3%)
Query: 15 AVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRT 74
+ I + + + +V+ + ++K + ++ D A +LR
Sbjct: 21 LIIIIGTLGVTLVALTLVMMLRQPEDPLSKLK-----------RTSSAPAADGARQQLRQ 69
Query: 75 RD-SKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGII 133
D + L+ F K L + + LR AG+RS ++ + + + I+ L+ G++
Sbjct: 70 SDQNAQLQKFAKFLEPEDVAELSAKQLMLRQAGYRSRDAVRLYYFAQFALGILGLVGGLV 129
Query: 134 WIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLIC 193
+ Q + I G +G+ P W+ V R+ I R +PDALD++L+C
Sbjct: 130 YTKVLGGGEGMTTQQTMMWAIGPGAIGYYLPKYWVRRRVDSRKEEITRGFPDALDMMLVC 189
Query: 194 VESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRN 253
VE+G S+DQ + RV ++ L+EE + E+ +R + R + V +
Sbjct: 190 VEAGQSLDQCIVRVGRELRASYPALAEEFEMVAYEMKAGKDRITVLNDMSERCGVQDVSS 249
Query: 254 ATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILV 313
LIQS +GTSI D+LRV E R +R+M AE+ A L K+T+ + +P L+++
Sbjct: 250 FVTVLIQSAAFGTSIADALRVYAEEMRDKRVMRAEEAANKLPTKMTLATMGLTVPPLLII 309
Query: 314 IIGPAILSIID 324
+IGP+ I
Sbjct: 310 LIGPSAHGISQ 320
>gi|83950071|ref|ZP_00958804.1| type II/IV secretion system protein, TadC subfamily protein
[Roseovarius nubinhibens ISM]
gi|83837970|gb|EAP77266.1| type II/IV secretion system protein, TadC subfamily protein
[Roseovarius nubinhibens ISM]
Length = 323
Score = 229 bits (585), Expect = 4e-58, Method: Composition-based stats.
Identities = 80/312 (25%), Positives = 164/312 (52%), Gaps = 12/312 (3%)
Query: 15 AVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRT 74
+A+ T + +I V++ + L+K KS ++Q + + K + SR
Sbjct: 18 LIAVGTLGLLLIMITVVLMINQPEDPLDKLKKS-------QKQQGLETKAKLRSGSR--- 67
Query: 75 RDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIW 134
++ L + L + + KL AG+R+ ++ + + + L++G+I+
Sbjct: 68 --NEKLDKYANFLEPQDEKQMSEMRKKLLQAGYRNRDAVRYYHFAQFALGLGLLVVGVIY 125
Query: 135 IFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICV 194
+ + + + +++ G +G+ AP W++ Q+RQ I+ +PD+LD++L+CV
Sbjct: 126 FLLFVQGPDTTTTQTILYILVPGAIGYLAPKYWVTKRQQQRQEEIQDGFPDSLDMMLVCV 185
Query: 195 ESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNA 254
E+G S+DQ++ RV+E+I L++E L ++ ++ +R + + +
Sbjct: 186 EAGQSMDQSIVRVSEEIRASYPALADEYQLVAQQIKAGRDKASVLNEMGDRCGVQDISSF 245
Query: 255 TQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVI 314
L+QS +GTS+GD+LRV +E R +R+M AE+KA + K+T+ + +P L++++
Sbjct: 246 VTVLVQSQTFGTSVGDALRVYAAEMRDKRVMRAEEKANKIPTKMTLCTMGLTVPPLLIIL 305
Query: 315 IGPAILSIIDTM 326
+GP++L I+D M
Sbjct: 306 VGPSVLGIMDLM 317
>gi|259418040|ref|ZP_05741959.1| type II secretion system protein [Silicibacter sp. TrichCH4B]
gi|259346946|gb|EEW58760.1| type II secretion system protein [Silicibacter sp. TrichCH4B]
Length = 323
Score = 229 bits (585), Expect = 4e-58, Method: Composition-based stats.
Identities = 81/320 (25%), Positives = 157/320 (49%), Gaps = 15/320 (4%)
Query: 4 YFFDLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSL 63
Y+ F I + I ++++A+ P L+K + +A ++
Sbjct: 13 YYLGDFGPLLAVGFIGLVLIIVAVVFALNQP---EDPLKKLQRDLA-----------SNQ 58
Query: 64 QKDSASSRLRTR-DSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLV 122
+ RLR ++ L+ F L + + KLR AG++S+ ++ + ++
Sbjct: 59 SAKPQNERLRQASRNEQLQKFANFLEPQDAEELSAMQLKLRQAGYQSKDAVRLFHFLQFA 118
Query: 123 VPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRA 182
+ + L LG+ +++ + ++Y V+ G + P WI+ +++R+ +I RA
Sbjct: 119 LGLSGLGLGLFFVYVMNADVDYTTNQMAMRVLGPGAACYYLPRYWITRRIEERKQAITRA 178
Query: 183 WPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENF 242
+PDALD++L+CVE+G S+DQA+ RV +++ L+EE + E+ + +
Sbjct: 179 FPDALDMMLVCVEAGQSLDQAIVRVGKELRASYPELAEEFEIVAYEMKAGKEKDKVLRDM 238
Query: 243 YNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPM 302
R + V + +IQS +GTSI D+LRV E R +R+M AE+ A L K+T+
Sbjct: 239 GTRCGVQDVASFVTVMIQSAAFGTSIADALRVYAGEMRDKRVMRAEEAANKLPTKMTLAT 298
Query: 303 IIFFLPVLILVIIGPAILSI 322
+ +P L+ ++I P++ +
Sbjct: 299 MGLTVPPLLAILIAPSVQGL 318
>gi|258405283|ref|YP_003198025.1| Type II secretion system F domain-containing protein
[Desulfohalobium retbaense DSM 5692]
gi|257797510|gb|ACV68447.1| Type II secretion system F domain protein [Desulfohalobium
retbaense DSM 5692]
Length = 320
Score = 229 bits (584), Expect = 5e-58, Method: Composition-based stats.
Identities = 93/327 (28%), Positives = 165/327 (50%), Gaps = 19/327 (5%)
Query: 10 DATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKD-SA 68
D L +A VS+F L+ V+ + ++S + +R IL K Q ++ Q
Sbjct: 4 DYLPLIMAGAIFVSLFLLMIGVM----------QLVRSNSKKRAILEKIQTSNQQSAFGD 53
Query: 69 SSRLRTRDSKSLRNFVKKLNLKAILVDEN-------IVNKLRAAGFRSEYSLNILLVVRL 121
RL + S + L V ++ + + AG RS + + +++
Sbjct: 54 PQRLDSSRSGFFGKIFGFVGLVGQKVAKDRVSDHTVLRPRFLKAGIRSPLAPAVFWGLKV 113
Query: 122 VVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKR 181
++P+ + ++ + L P + +L GF P +W++N QKR+ +I +
Sbjct: 114 IMPLALPLCFGLFYYLIPDLTLSPTNTLLIITVL-AVAGFYVPDLWLTNKRQKRRQTILK 172
Query: 182 AWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFEN 241
+PDALDL+++CVE+G+ +D A+ RVA++ + LSEE+ E R+ A +N
Sbjct: 173 GFPDALDLMVVCVEAGMGLDAAISRVAKESKSNNATLSEELHFFTLETRAGMPRKDALKN 232
Query: 242 FYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVP 301
RT + ++N T LIQ++++GTS+ +L+V R+ER AE+KAA + KL P
Sbjct: 233 LAMRTDLQQMQNLTTLLIQTEKFGTSVSQALKVFSESMRTERFQRAEEKAAKIPVKLLFP 292
Query: 302 MIIFFLPVLILVIIGPAILSIIDTMKD 328
+I+F P L + I+GPA++ I T+ +
Sbjct: 293 LIMFIFPSLFVAILGPAVIRISQTLLN 319
>gi|148557757|ref|YP_001265339.1| type II secretion system protein [Sphingomonas wittichii RW1]
gi|148502947|gb|ABQ71201.1| type II secretion system protein [Sphingomonas wittichii RW1]
Length = 330
Score = 229 bits (584), Expect = 5e-58, Method: Composition-based stats.
Identities = 110/328 (33%), Positives = 178/328 (54%), Gaps = 9/328 (2%)
Query: 2 PHYFFDLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQIT 61
P +F L + +A+ TA+ + + +A+V S+ + +R++++ RE L+
Sbjct: 7 PQFFDTLL---SIGIALATAIVMLVVGHALV-KSIARDPMARRVRALNDRREQLKAGVAA 62
Query: 62 SLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNK---LRAAGFRSEYSLNILLV 118
S K ++ + S S+ L +L D + L AG R++ + ++
Sbjct: 63 S--KTRRRQKMDKKASISVDRMKAILGSMKMLQDSQLKAASLSLTRAGIRTKDAAITVIF 120
Query: 119 VRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSS 178
RLV P++ ++ ++ E + V + AP V++ NL+ KRQ +
Sbjct: 121 FRLVSPVLIGGTAVVGVYVLHWFPEASAFKQYMIVAGALIASYKAPDVYVKNLITKRQQA 180
Query: 179 IKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVA 238
I++A PDALDLL+IC E+G+S+D A RVA ++ L +E LT EL FL +R+ A
Sbjct: 181 IRKALPDALDLLVICAEAGLSVDLAFNRVARELSKAYPELGDEFALTAIELGFLTDRRQA 240
Query: 239 FENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKL 298
FEN R +D +R +IQ+++YGT + +LRVL +E R ER+M AE+KAA L +
Sbjct: 241 FENLAQRVNLDSIRGVVTTMIQTEKYGTPLAAALRVLSAEFRHERMMRAEEKAARLPAIM 300
Query: 299 TVPMIIFFLPVLILVIIGPAILSIIDTM 326
TVP+I+F LPVL +VI+GPA SI D +
Sbjct: 301 TVPLIMFILPVLFIVILGPAACSIRDNV 328
>gi|325108941|ref|YP_004270009.1| type II secretion system F domain protein [Planctomyces
brasiliensis DSM 5305]
gi|324969209|gb|ADY59987.1| Type II secretion system F domain protein [Planctomyces
brasiliensis DSM 5305]
Length = 310
Score = 228 bits (583), Expect = 6e-58, Method: Composition-based stats.
Identities = 81/306 (26%), Positives = 157/306 (51%), Gaps = 10/306 (3%)
Query: 23 SIFSLIYAVVIPSLG--SGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSL 80
+ F I A++ + E+ + + R+ R+ + +S ++D + L +K+
Sbjct: 10 ASFGAIVALIWFVFSLLGNKQERVEERLEDIRDPSRRFKESSAERDGVGNML----NKAA 65
Query: 81 RNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDK 140
K L K L + + ++ AGF S + L ++ + I L++G + F
Sbjct: 66 PTLSKALKPKTELEESALKIRMANAGFNSPNAPQAYLAIKFISMIGGLLVGSSFGFLQYG 125
Query: 141 LLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISI 200
+ + + AV++ +GF P + ++ ++ KR+ +I PDALDLL++CVESG+ +
Sbjct: 126 MTQNGWT----AVVIGAGLGFYLPELILAYVISKRKQAIFLTMPDALDLLVVCVESGLGL 181
Query: 201 DQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQ 260
DQ + RV ++ + + E L +L NR+ + RT +D ++ LIQ
Sbjct: 182 DQGMNRVTAELSDTAPEICAEFSLCNFQLQMGRNRREVLHDLGVRTGVDDMKALAAILIQ 241
Query: 261 SDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAIL 320
+DR+G+SI +LRV R +R+ AE+KA ++ P+++F P + +V++GPA +
Sbjct: 242 ADRFGSSIAQALRVQSDSMRVKRMQIAEEKAQKTAVQMIFPLVLFIFPGIFVVLVGPAAI 301
Query: 321 SIIDTM 326
S++D++
Sbjct: 302 SMMDSL 307
>gi|87312288|ref|ZP_01094386.1| probable secretion system protein TadC [Blastopirellula marina DSM
3645]
gi|87284992|gb|EAQ76928.1| probable secretion system protein TadC [Blastopirellula marina DSM
3645]
Length = 309
Score = 228 bits (582), Expect = 8e-58, Method: Composition-based stats.
Identities = 91/307 (29%), Positives = 152/307 (49%), Gaps = 10/307 (3%)
Query: 22 VSIFSLIYAVVIPSLGS-GELEKRMKS-VAVEREILRKQQITSLQKDSASSRLRTRDSKS 79
+++F LI A V + S R + + ++ + K+ ++ S L K+
Sbjct: 3 LAVFGLITAGVWWLIDSWSPSATRAEDRLDDIKDPIGKKNREDRSGNAVSKVL----EKA 58
Query: 80 LRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYD 139
F L K + +L AGFRSE + NI L ++ +I LI+G +
Sbjct: 59 TPAFAAPLQPKNAKDANALKERLTHAGFRSEAAPNIFLGLKFASLLIGLIVGGGLVVLLG 118
Query: 140 KLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGIS 199
+ + I + F PS+ + L +KR+ I R PDALDL+++CVE+G+
Sbjct: 119 NYNQSDLFKGIA----IAGISFYIPSIGLWYLGKKRKEQIFRGLPDALDLMVVCVEAGLG 174
Query: 200 IDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALI 259
+DQA+RRV+E++ ++EE L +L R NRT +D +R+ LI
Sbjct: 175 LDQAMRRVSEEMKKTYRVIAEEFGLCNFQLQVGRQRSDVLHELGNRTGVDDLRSLAAILI 234
Query: 260 QSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAI 319
Q+D++G+SI +LRV R+ R AE+KAA K+ P++ F P + +V++GPA
Sbjct: 235 QADKFGSSISQALRVQSDSMRTRRRQIAEEKAAKTAVKMIFPLVFFIFPGIFVVLVGPAA 294
Query: 320 LSIIDTM 326
+++I M
Sbjct: 295 ITVIREM 301
>gi|157961842|ref|YP_001501876.1| type II secretion system protein [Shewanella pealeana ATCC 700345]
gi|157846842|gb|ABV87341.1| type II secretion system protein [Shewanella pealeana ATCC 700345]
Length = 320
Score = 227 bits (579), Expect = 2e-57, Method: Composition-based stats.
Identities = 86/327 (26%), Positives = 153/327 (46%), Gaps = 22/327 (6%)
Query: 5 FFDLFDATELAVAITTAVSIFSLIYAVVIPSLGSG---ELEKRMKSVAVEREILRKQQIT 61
FFD E A+ +A++ + A+ I L SG + R+KS+ E+ Q +T
Sbjct: 11 FFDDPQHVEWAIYSISAIA--GVTLAISISYLISGVYSPIRSRLKSLNGEKVTKNSQDVT 68
Query: 62 SLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRL 121
+ + + L AGF SE +L + RL
Sbjct: 69 GTLEHGIGEMAK--------------KPFLNFSNHETRRLLIHAGFHSENALAVFNASRL 114
Query: 122 VVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKR 181
++ + I ++ + + + F + IG F APS+ + +L ++R ++
Sbjct: 115 LLILFGFITSLLILNLFPNI--SGFWTFYIFCLFIGGA-FIAPSMVLQSLSKRRMRKLRV 171
Query: 182 AWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFEN 241
+PDALDLL++C E+G+ + A++RVA ++ L+ E+ L +++ +VA +
Sbjct: 172 GFPDALDLLVVCCEAGLGLMAAMQRVARELAFSHPSLASELELVCSKVRAGLTIKVALQE 231
Query: 242 FYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVP 301
F RT ++ ++ A+ QS R GT I ++LRV E R++RL AE++AA L K+ P
Sbjct: 232 FTERTGLEDIKGLNSAISQSMRLGTGIAETLRVFSDEYRNKRLQAAEEQAAKLAVKMIFP 291
Query: 302 MIIFFLPVLILVIIGPAILSIIDTMKD 328
M+ P +V +GPA+L ++
Sbjct: 292 MMCCIWPSFFIVAVGPAVLKVMKVWGQ 318
>gi|86147459|ref|ZP_01065771.1| Flp pilus assembly protein TadC [Vibrio sp. MED222]
gi|85834752|gb|EAQ52898.1| Flp pilus assembly protein TadC [Vibrio sp. MED222]
Length = 323
Score = 227 bits (579), Expect = 2e-57, Method: Composition-based stats.
Identities = 66/296 (22%), Positives = 127/296 (42%), Gaps = 19/296 (6%)
Query: 32 VIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKA 91
+ L+K++K ++ R SSR + +L + +
Sbjct: 41 FLFVGTRSPLDKKLKQISSGRHT--------------SSRKPYDFTNTLESLTPFIGRGN 86
Query: 92 ILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVG 151
+E KL AG+ + +L++ +++ ++ + + + L
Sbjct: 87 KKDNETYSEKLMHAGYHEKSALSVFYAFKVLSALVGFVCAFMVFY-----LAIGGSYNNL 141
Query: 152 AVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDI 211
++ +VG P+ +S + + RQ IK PDALDLL++C ESG+ + AL RVA ++
Sbjct: 142 LIVTCIFVGTFLPNFILSKMQKDRQRKIKNGVPDALDLLVVCTESGLGFNAALGRVANEL 201
Query: 212 GGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDS 271
L++E+ A++ A RT + + L + R G S+ +
Sbjct: 202 YISQPELADELDTVFAKIQAGVTMPDALSQLVERTGLHELDGLVSLLSHASRMGGSLAQT 261
Query: 272 LRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
LR + R +R AE+ AA + K+ PM++F P +V +GP ++ ++D +
Sbjct: 262 LRDYTEDFRDKRQQAAEEIAAKIPTKMLFPMLLFIWPCFFIVALGPGMMIVMDALS 317
>gi|167624197|ref|YP_001674491.1| type II secretion system protein [Shewanella halifaxensis HAW-EB4]
gi|167354219|gb|ABZ76832.1| type II secretion system protein [Shewanella halifaxensis HAW-EB4]
Length = 320
Score = 225 bits (575), Expect = 5e-57, Method: Composition-based stats.
Identities = 85/329 (25%), Positives = 158/329 (48%), Gaps = 26/329 (7%)
Query: 5 FFDLFDATELAVAITTAVSIFSLIYAVVIPSLGSG---ELEKRMKSVAVEREILRKQQIT 61
FFD D + AI + +I + A+ I L SG + KR+KS+
Sbjct: 11 FFD--DPQHVEWAIYSVAAIAGVTLAISISYLISGVYSPIRKRLKSLNA----------- 57
Query: 62 SLQKDSASSRLRTRDSKSLRNFVKKLNLKAILV--DENIVNKLRAAGFRSEYSLNILLVV 119
+ +++ + +L + + ++ K L + L AGF SE +L +
Sbjct: 58 -----AEGTKVTHDVTGTLEHGMGEMAKKPFLNFSNHETRRLLIHAGFHSENALAVFNAS 112
Query: 120 RLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSI 179
RL++ ++ ++ ++ + + E + L F PS+ + +L +R +
Sbjct: 113 RLLLILLGFVISLVIL---NLFPEISGIWTIYIFCLFIGGAFIVPSMVLQSLANRRMRQL 169
Query: 180 KRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAF 239
+ +PDALDLL++C E+G+ + A++RVA ++ L+ E+ L +++ +VA
Sbjct: 170 RVGFPDALDLLVVCCEAGLGLMAAMQRVARELAFSHPSLASELDLVCSKVRAGLTIKVAL 229
Query: 240 ENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLT 299
+ F +RT ++ ++ A+ QS R GT I ++LRV E R +RL AE++AA L K+
Sbjct: 230 QEFTDRTGLEDIKGLNSAISQSMRLGTGIAETLRVFSDEYRDKRLQAAEEQAAKLAVKMI 289
Query: 300 VPMIIFFLPVLILVIIGPAILSIIDTMKD 328
PM+ P +V +GPA+L ++
Sbjct: 290 FPMMCCIWPSFFIVAVGPAVLKVMKVWGQ 318
>gi|73542334|ref|YP_296854.1| type II secretion system protein [Ralstonia eutropha JMP134]
gi|72119747|gb|AAZ62010.1| type II secretion system protein [Ralstonia eutropha JMP134]
Length = 323
Score = 225 bits (575), Expect = 5e-57, Method: Composition-based stats.
Identities = 88/319 (27%), Positives = 159/319 (49%), Gaps = 12/319 (3%)
Query: 9 FDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSA 68
F + +L V V+ F +++ V+ + R + +A Q S
Sbjct: 8 FQSDQLIVLTLIFVAAFGMVFGVLYA-FSPNRMRGRAEQLAG--------QPGQASGRSG 58
Query: 69 SSRLRTRDSKSLRNFVKKLNL-KAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIF 127
+ V +L+L K + + AG+RS + + + ++ I
Sbjct: 59 RQQAWIDKLVQWTQPVSRLSLPKEGWEGSQLRVRFMNAGWRSTSAAPLYFTAKTILAIAL 118
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
++G+I + L + + + + L+ +G+ P+ +S+ V +RQ ++ +PD +
Sbjct: 119 PMIGLIAVSNQPALQQQ--HIMLALLTLLAAIGYYLPNTVLSHKVAERQRAVFEEFPDVI 176
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQ 247
DLL +CVE+G+ +D AL RVA+++ + L++E+ L + EL +++ A N RT
Sbjct: 177 DLLTVCVEAGLGLDAALMRVADELALRCPVLADELQLMLLELRSGFSKEKALSNLSLRTG 236
Query: 248 MDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFL 307
++ V LIQ+DR+GTS+GDSLRVL R++R M AE++AA + KL P+I
Sbjct: 237 VEDVDKFASMLIQADRFGTSLGDSLRVLSDMLRTKRRMRAEEQAAKIALKLLFPLIFTIF 296
Query: 308 PVLILVIIGPAILSIIDTM 326
P L+LV++GPA + I +
Sbjct: 297 PSLLLVLLGPAFIQIYRVL 315
>gi|89053483|ref|YP_508934.1| type II secretion system protein [Jannaschia sp. CCS1]
gi|88863032|gb|ABD53909.1| type II secretion system protein [Jannaschia sp. CCS1]
Length = 326
Score = 225 bits (574), Expect = 6e-57, Method: Composition-based stats.
Identities = 89/330 (26%), Positives = 163/330 (49%), Gaps = 13/330 (3%)
Query: 3 HYFFDLFDATELAVA-----ITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRK 57
+ DLFD+ + + +++ L + + +L + MK + LR
Sbjct: 2 EFLTDLFDSANAFLIDQLGELGPLIAVGGLGVLLCLVALPT-----LMKKQKDPYKKLRD 56
Query: 58 QQITSLQKDSASSRLR-TRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNIL 116
++ + + LR + ++ L F + L + ++ AG+R++ S+ +
Sbjct: 57 ERGGTGKAKGKKDGLRLSSKNEKLERFAQYLEPQDEQELSATQLQMIRAGYRAKSSIQMF 116
Query: 117 LVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQ 176
+L + + L+LG +++ Q + VI+ G VG+ AP WI+ Q R+
Sbjct: 117 NFAKLALALGGLLLGTLYVLITGGGG--SAQNSILFVIVPGVVGYYAPKYWITKRAQTRE 174
Query: 177 SSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQ 236
I +PDALDL+L+CVE+G S+DQA+ +VA +I PL+EE + E+ ++
Sbjct: 175 DQINSGFPDALDLMLVCVEAGQSLDQAIIKVANEIKTSYPPLAEEFEIVSYEMKAGKDKT 234
Query: 237 VAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGP 296
+ R + V + LIQS +GTS+ ++L+V E R +R+ AE+KA L
Sbjct: 235 KVLRDMGERVGIQDVNSFITTLIQSSTFGTSVAEALKVYSDEMRDKRISRAEEKANKLPT 294
Query: 297 KLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
KLT+ ++F +P L++++IGP+I I +
Sbjct: 295 KLTLFTMLFCVPPLLVILIGPSIYGIATDL 324
>gi|194288828|ref|YP_002004735.1| tad secretion system, secretion accessory protein [Cupriavidus
taiwanensis LMG 19424]
gi|193222663|emb|CAQ68666.1| Tad secretion system, secretion accessory protein [Cupriavidus
taiwanensis LMG 19424]
Length = 324
Score = 225 bits (573), Expect = 1e-56, Method: Composition-based stats.
Identities = 89/325 (27%), Positives = 158/325 (48%), Gaps = 12/325 (3%)
Query: 3 HYFFDLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITS 62
F F ++ V V+ F ++ V+ L L R + +A Q
Sbjct: 2 QEIFQGFQGDQVIVLALIFVAAFGTVFGVLYA-LAPHRLRGRAEQIAG--------QAGP 52
Query: 63 LQKDSASSRLRTRDSKSLRNFVKKLNL-KAILVDENIVNKLRAAGFRSEYSLNILLVVRL 121
+ D + + +L+L K + + + AG+RS + + +
Sbjct: 53 FEADQGRQQALIEKLVKWAQPISRLSLPKEGWENSQLRVRFMNAGWRSASAAPLYFGAKT 112
Query: 122 VVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKR 181
V+ + +LG++ + + A L+G G+ P+V ++ V +RQ ++
Sbjct: 113 VLAVALPMLGLLAVSSQPGQQSQQLMFALLA--LLGATGYYLPNVVLARKVSQRQRTVFE 170
Query: 182 AWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFEN 241
+PD +DLL +CVE+G+ +D AL RVA+++ + L++E+ L + EL +++ A N
Sbjct: 171 EFPDVIDLLTVCVEAGLGLDAALMRVADELALRCPVLADELQLMLLELRSGFSKEKALTN 230
Query: 242 FYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVP 301
RT ++ V LIQ+DR+GTS+G+SLRVL R++R M AE++AA + KL P
Sbjct: 231 LSLRTGVEDVDKFASMLIQADRFGTSLGESLRVLSDMLRTKRRMRAEEQAAKIALKLLFP 290
Query: 302 MIIFFLPVLILVIIGPAILSIIDTM 326
+I P L+LV++GPA + I +
Sbjct: 291 LIFTIFPSLLLVLLGPAFIQIYRVL 315
>gi|37680835|ref|NP_935444.1| Flp pilus assembly protein TadC [Vibrio vulnificus YJ016]
gi|37199584|dbj|BAC95415.1| Flp pilus assembly protein TadC [Vibrio vulnificus YJ016]
Length = 329
Score = 223 bits (570), Expect = 2e-56, Method: Composition-based stats.
Identities = 73/327 (22%), Positives = 146/327 (44%), Gaps = 24/327 (7%)
Query: 5 FFDLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQ 64
F D+ + + +S L+ V + G+ K+++ +
Sbjct: 23 FGDIQFNEQWVLLALILISTSLLVVTVAVVFSGN--------------RAPVKKKLEQIH 68
Query: 65 KDSASSRLRTRDSKSLRNFVKKLNL----KAILVDENIVNKLRAAGFRSEYSLNILLVVR 120
K+ + L+ + S+ + N ++ L K E+I ++L AGF + +L + ++
Sbjct: 69 KEVSGKALKKK-SRKVENTLESLAPIVVGKDSKEKESIRSQLMHAGFHNRDALTVFYAIK 127
Query: 121 LVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIK 180
+ ++ F + + ++ G P++ +++ V+KRQ I+
Sbjct: 128 IFFAVLGFGGAAAVFFLLPDMDNSTLVM-----VVAVAGGLYIPNIGLNHFVKKRQRMIR 182
Query: 181 RAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFE 240
PDALDLL++C ESG+ + ALR+VA+++ ++E+ A++ AFE
Sbjct: 183 AGVPDALDLLVVCTESGLGFNAALRKVADELAISHPEFADELDTVCAKIKAGVEMSTAFE 242
Query: 241 NFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV 300
RT + + L + + G S+ +LR + R +R E E+ AA + K+
Sbjct: 243 ELVTRTGLSEINGLVNMLSHASKIGGSLSQTLRDYTEDFRDKRNQEVEEIAAKIPTKMIF 302
Query: 301 PMIIFFLPVLILVIIGPAILSIIDTMK 327
P+++F P +V +GPA+LS+ D +
Sbjct: 303 PLLLFIWPCFFIVAVGPALLSLSDALG 329
>gi|218710398|ref|YP_002418019.1| Flp pilus assembly protein TadC [Vibrio splendidus LGP32]
gi|218323417|emb|CAV19594.1| Flp pilus assembly protein TadC [Vibrio splendidus LGP32]
Length = 323
Score = 223 bits (570), Expect = 2e-56, Method: Composition-based stats.
Identities = 69/276 (25%), Positives = 132/276 (47%), Gaps = 5/276 (1%)
Query: 52 REILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEY 111
R L K+ + S ++R S +L + ++ +E KL AGF +
Sbjct: 47 RSPLDKKLKQISETGSPNNRKPYDFSNTLESLSPFISKGNKKDNETYSQKLMHAGFHEKN 106
Query: 112 SLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNL 171
+L++ ++++ ++ +I G + + + + ++ ++G P++ +S L
Sbjct: 107 ALSVFYALKVLSSLVGIIAGFMVYY-----ISFGGSYNNLLIMTCVFLGTFTPNIILSKL 161
Query: 172 VQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSF 231
++RQ I+ PDALDLL++C ESG+ + AL RVA ++ L++E+ A++
Sbjct: 162 QKERQKKIRNGVPDALDLLVVCTESGLGFNAALGRVASELYVSQPELADELETVFAKIQA 221
Query: 232 LPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKA 291
A F +RT + + L + R G S+ +LR + R +R AE+ A
Sbjct: 222 GVTMPDALRQFIDRTGLVELEGLVSLLSHASRMGGSLAQTLRDYTVDFRDKRQQAAEEIA 281
Query: 292 ASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
A + K+ PM++F P +V +GP I+ +ID +
Sbjct: 282 AKIPTKMLFPMLLFIWPCFFIVALGPGIIIVIDALG 317
>gi|157375501|ref|YP_001474101.1| putative putative tight adherence TadC-like transmembrane protein
[Shewanella sediminis HAW-EB3]
gi|157317875|gb|ABV36973.1| conserved hypothetical putative tight adherence TadC-related
transmembrane protein [Shewanella sediminis HAW-EB3]
Length = 321
Score = 223 bits (570), Expect = 2e-56, Method: Composition-based stats.
Identities = 91/329 (27%), Positives = 166/329 (50%), Gaps = 20/329 (6%)
Query: 4 YFFDLFDAT-ELAVAITTAVSIFSLIYAVVIPSLGSG---ELEKRMKSVAVEREILRKQQ 59
F LFD ++ AI I +++A+ + L SG L +R+KS+ E +Q
Sbjct: 7 LFGSLFDDPEQIKWAIFAVAGIAGVMFALSLAFLISGIYSPLRQRLKSLNKE------EQ 60
Query: 60 ITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVV 119
I ++Q D ++ + + V+K L + ++ L AG SE ++ I +
Sbjct: 61 IKTVQTDVNATL-----EHGIGSMVEKSPLN--MSNDETRRLLIHAGLHSENAMAIFSSI 113
Query: 120 RLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSI 179
R+++ +I ++ + Y + + V V L+ F PS+ + + +R +
Sbjct: 114 RIILLLIGAGSSVLVLSLYP---DLSTMMSVYIVALLVGGAFLLPSLVLQKIASRRMRML 170
Query: 180 KRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAF 239
+ +PDALDLL++C E+G+ + A++RVA ++ L+ E+ L +++ +VA
Sbjct: 171 RTGFPDALDLLVVCCEAGLGLMAAMQRVARELALSHPTLASELDLVCSKVRAGLTVKVAL 230
Query: 240 ENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLT 299
F +RT ++ ++ A+ QS R GT I ++LRV E R++RL EAE++AA L K+
Sbjct: 231 NEFTDRTGLEDIKGLNSAISQSIRLGTGIAETLRVFSDEYRNKRLQEAEEQAAKLAVKMI 290
Query: 300 VPMIIFFLPVLILVIIGPAILSIIDTMKD 328
PM++ P +V IGPA+L ++
Sbjct: 291 FPMMLCIWPSFFIVAIGPAVLKVMKVWGQ 319
>gi|149911401|ref|ZP_01900019.1| hypothetical putative tight adherence TadC-related
transmembraneprotein [Moritella sp. PE36]
gi|149805509|gb|EDM65514.1| hypothetical putative tight adherence TadC-related
transmembraneprotein [Moritella sp. PE36]
Length = 325
Score = 223 bits (570), Expect = 2e-56, Method: Composition-based stats.
Identities = 90/335 (26%), Positives = 160/335 (47%), Gaps = 26/335 (7%)
Query: 3 HYFFDLFDATELA-VAITTAVSIFSLIYAVVIPSLGSG---ELEKRMKSVAVEREILRKQ 58
F F E+ AI I + AV + SL SG ++K++ ++ E
Sbjct: 6 QLFETTFADPEMMKWAIYLIAGIAGITLAVALSSLASGLYSPVKKQLNKLSKE------- 58
Query: 59 QITSLQKDSASSRLRTRDSKSLRNFVKKLNL-----KAILVDENIVNKLRAAGFRSEYSL 113
++ L SL + + KLN K D + L AGF S+ +L
Sbjct: 59 -------STSHDDLAKEYESSLEHTIDKLNHVPFINKRYQGDSSTKKLLIHAGFHSQDAL 111
Query: 114 NILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQ 173
I ++L+ + LI G + +++ Y V ++ + + P + + + +
Sbjct: 112 KIFNSIKLL---LLLISGALVTLLINQISSYSTTKTVYIILFVLGAAYLLPGIILKKIAK 168
Query: 174 KRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLP 233
+R + +KR +PDALDLL++C ESG+ + ++ +RVA+++ LS E+ L +++ +
Sbjct: 169 RRMADLKRYFPDALDLLIVCCESGLGLLESFQRVAKELQLAHPYLSYELNLVCSKVRYGL 228
Query: 234 NRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAAS 293
Q A + F +RT ++ +R ++QS R GT + ++R+ E R +RL AE+ AA
Sbjct: 229 TLQQALKEFSDRTGLEDIRGLNSVIVQSLRLGTGVAATIRIYSDEYREKRLQAAEENAAK 288
Query: 294 LGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMKD 328
LG K+ PM+ P +V IGPA+L ++ D
Sbjct: 289 LGVKMIFPMMCCIWPSFFIVAIGPAVLKVMSVWGD 323
>gi|99082191|ref|YP_614345.1| type II secretion system protein [Ruegeria sp. TM1040]
gi|99038471|gb|ABF65083.1| hypothetical protein TM1040_2351 [Ruegeria sp. TM1040]
Length = 323
Score = 223 bits (569), Expect = 3e-56, Method: Composition-based stats.
Identities = 78/304 (25%), Positives = 145/304 (47%), Gaps = 6/304 (1%)
Query: 19 TTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSK 78
AV L+ VV L + E +K + R K + ++
Sbjct: 21 LMAVGFLGLLLVVVAAFLLFNQPEDPLKKLQ------RNLSADQNAKPQNERLRQASRNE 74
Query: 79 SLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGY 138
L+ F L + + KLR AG++S+ ++ + ++ + + L G+ ++
Sbjct: 75 QLQKFANFLEPQDAEELSAMQLKLRQAGYQSKDAVRLFHFLQFALGLAGLGFGLFLVYVL 134
Query: 139 DKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGI 198
+ +EY V+ G + P WI+ +++R+ +I RA+PDALD++L+CVE+G
Sbjct: 135 NADVEYTTNQLAMRVLGPGAAAYYLPRYWITRRIEERKQAITRAFPDALDMMLVCVEAGQ 194
Query: 199 SIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQAL 258
S+DQ++ RV +++ L+EE + E+ + + R + V + +
Sbjct: 195 SLDQSIVRVGKELQASYPELAEEFEIVAHEMKAGKEKDKVLRDMATRCGVQDVASFVTVM 254
Query: 259 IQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPA 318
IQS +GTSI D+LRV E R +R+M AE+ A L K+T+ + +P L+ ++I P+
Sbjct: 255 IQSAAFGTSIADALRVYAGEMRDKRVMRAEEAANKLPTKMTLATMGLTVPPLLAILIAPS 314
Query: 319 ILSI 322
+ +
Sbjct: 315 VQGL 318
>gi|27365114|ref|NP_760642.1| Flp pilus assembly protein TadC [Vibrio vulnificus CMCP6]
gi|320155497|ref|YP_004187876.1| type II/IV secretion system protein TadC, associated with Flp pilus
assembly [Vibrio vulnificus MO6-24/O]
gi|27361260|gb|AAO10169.1| Flp pilus assembly protein TadC [Vibrio vulnificus CMCP6]
gi|319930809|gb|ADV85673.1| type II/IV secretion system protein TadC, associated with Flp pilus
assembly [Vibrio vulnificus MO6-24/O]
Length = 314
Score = 223 bits (569), Expect = 3e-56, Method: Composition-based stats.
Identities = 73/327 (22%), Positives = 146/327 (44%), Gaps = 24/327 (7%)
Query: 5 FFDLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQ 64
F D+ + + +S L+ V + G+ K+++ +
Sbjct: 8 FGDIQFNEQWVLLALILISTSLLVVTVAVVFSGN--------------RAPVKKKLEQIH 53
Query: 65 KDSASSRLRTRDSKSLRNFVKKLNL----KAILVDENIVNKLRAAGFRSEYSLNILLVVR 120
K+ + L+ + S+ + N ++ L K E+I ++L AGF + +L + ++
Sbjct: 54 KEVSGKALKKK-SRKVENTLESLAPIVVGKDSKEKESIRSQLMHAGFHNRDALTVFYAIK 112
Query: 121 LVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIK 180
+ ++ F + + ++ G P++ +++ V+KRQ I+
Sbjct: 113 IFFAVLGFGGAAAVFFLLPDMDNSTLVM-----VVAVAGGLYIPNIGLNHFVKKRQRMIR 167
Query: 181 RAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFE 240
PDALDLL++C ESG+ + ALR+VA+++ ++E+ A++ AFE
Sbjct: 168 AGVPDALDLLVVCTESGLGFNAALRKVADELAISHPEFADELDTVCAKIKAGVEMSTAFE 227
Query: 241 NFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV 300
RT + + L + + G S+ +LR + R +R E E+ AA + K+
Sbjct: 228 ELVTRTGLSEINGLVNMLSHASKIGGSLSQTLRDYTEDFRDKRNQEVEEIAAKIPTKMIF 287
Query: 301 PMIIFFLPVLILVIIGPAILSIIDTMK 327
P+++F P +V +GPA+LS+ D +
Sbjct: 288 PLLLFIWPCFFIVAVGPALLSLSDALG 314
>gi|78357408|ref|YP_388857.1| hypothetical protein Dde_2365 [Desulfovibrio desulfuricans subsp.
desulfuricans str. G20]
gi|78219813|gb|ABB39162.1| conserved hypothetical protein [Desulfovibrio desulfuricans subsp.
desulfuricans str. G20]
Length = 324
Score = 223 bits (568), Expect = 3e-56, Method: Composition-based stats.
Identities = 83/326 (25%), Positives = 157/326 (48%), Gaps = 15/326 (4%)
Query: 10 DATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREI---LRKQQITSLQKD 66
+ L VA + S+ + + G L R ++ ++R + + +I+ +Q
Sbjct: 5 NMLPLLVAALASASVMLAFFGL------RGLLNGRQRAKQLQRRVRHHISPTRISGMQSA 58
Query: 67 SASSRLRTRDSKSLRNFVKKLNLKAILVDEN----IVNKLRAAGFRSEYSLNILLVVRLV 122
+ + + R + + L + + + + +E L AG+RS + IL +
Sbjct: 59 ADTQQGRQQLTAKLNDLMSTIGERLAPRNEEQMGQTNLALVRAGYRSRKAPLILWGAKAG 118
Query: 123 VPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRA 182
++ L G++ + + P + I +G P W+S+ V+ R+ ++ +
Sbjct: 119 CMLLGLTCGLLIRLAAGETI--PAGMLALLFICPAVLGLYLPDAWVSSKVRTRRRLMEDS 176
Query: 183 WPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENF 242
PDALDLL++CVE+G+ +DQA+ RVA ++ S L EE+ + ++EL R + +N
Sbjct: 177 LPDALDLLVVCVEAGMGLDQAIGRVARELSLSSPVLGEELSMLVSELRAGKTRSESLKNL 236
Query: 243 YNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPM 302
+R ++ V + +IQ+D +GTSI +LRV R+ R AE+ AA + KL P+
Sbjct: 237 AHRVGLEDVNSLVTLIIQADAFGTSIAHTLRVYSDTMRTTRFQRAEEIAAKMPVKLLFPL 296
Query: 303 IIFFLPVLILVIIGPAILSIIDTMKD 328
+ LP L + I+GPA + ++
Sbjct: 297 VFCILPALFVAIMGPAGIRLMQVFSQ 322
>gi|149175288|ref|ZP_01853910.1| probable secretion system protein TadC [Planctomyces maris DSM
8797]
gi|148845897|gb|EDL60238.1| probable secretion system protein TadC [Planctomyces maris DSM
8797]
Length = 308
Score = 222 bits (566), Expect = 5e-56, Method: Composition-based stats.
Identities = 80/304 (26%), Positives = 159/304 (52%), Gaps = 8/304 (2%)
Query: 23 SIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRN 82
+IF ++ VI + +L + LR + + +D+ S+ + K+
Sbjct: 10 AIFGMVIVGVIALI--NKLNFDHSRANARLDELRNPHLRNNPEDANSAS--SLFEKAAPA 65
Query: 83 FVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLL 142
K L K+ L + + +L AG+ SE + +I L +++ + ++ ++LG + F +
Sbjct: 66 LSKALTPKSELEENQLKVRLANAGYNSEAAPSIFLSLKVALGLLGVVLGSGYGFYNFGMT 125
Query: 143 EYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQ 202
+ + ++++ G +GF P + + L++ R I + PDALDLL++CVE+G+ +D
Sbjct: 126 QNGWT----SLVIAGGIGFYLPEIALRLLIKGRVERIFLSLPDALDLLVVCVEAGLGLDA 181
Query: 203 ALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSD 262
A+RRV+E++ + + E L +L R+ + R+ +D +R LIQ+D
Sbjct: 182 AMRRVSEELEETAPDVCSEFALCNLQLQMGRPRREVLHDLGIRSGVDDMRALAAILIQAD 241
Query: 263 RYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
++G+SI +LRV R +R AE++AA K+ P+++F P + +V++GPA + +
Sbjct: 242 KFGSSIAQALRVQSDSMRVKRSQLAEEQAAMTAVKMIFPLVLFIFPGIFVVLVGPAAIMM 301
Query: 323 IDTM 326
I+ +
Sbjct: 302 INGL 305
>gi|212635449|ref|YP_002311973.1| Tight adherence TadC-like transmembrane protein [Shewanella
piezotolerans WP3]
gi|212556933|gb|ACJ29387.1| Tight adherence TadC-like transmembrane protein, putative
[Shewanella piezotolerans WP3]
Length = 321
Score = 222 bits (566), Expect = 6e-56, Method: Composition-based stats.
Identities = 89/327 (27%), Positives = 155/327 (47%), Gaps = 21/327 (6%)
Query: 5 FFDLFDATELAVAITTAVSIFSLIYAVVIPSLGSG---ELEKRMKSVAVEREILRKQQIT 61
FFD + T + AI I + A+ I L SG L KR+K++ T
Sbjct: 11 FFD--NPTHVEWAIYAVAGIAGVTLAIAISYLISGFYSPLRKRLKTLN-----------T 57
Query: 62 SLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRL 121
+ + + KK + L AGF SE SL I +RL
Sbjct: 58 GDSGAPSGDAVSETLEHGMVEMAKK--PFLNFSNHETRRLLIHAGFHSENSLAIFNAIRL 115
Query: 122 VVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKR 181
++ ++ ++ ++ + + K+ + + IG F PS+ + +L ++R ++
Sbjct: 116 LLLLLGAVISVLILNFFPKI--AGIWIIYIFCMFIGGA-FILPSMVLQSLAKRRMRLLRV 172
Query: 182 AWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFEN 241
+PDALDLL++C E+G+ + AL+RVA+++ L+ E+ L +++ +VA +
Sbjct: 173 GFPDALDLLVVCCEAGLGLMAALQRVAKELAFSHPSLASELELVCSKVRAGLTIKVALQE 232
Query: 242 FYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVP 301
F RT ++ ++ A+ QS R GT I ++LRV E R +RL AE++AA L K+ P
Sbjct: 233 FTERTGLEDIKGLNSAISQSMRLGTGIAETLRVFSDEYRDKRLQAAEEQAAKLAVKMIFP 292
Query: 302 MIIFFLPVLILVIIGPAILSIIDTMKD 328
M+ P +V +GPA+L ++
Sbjct: 293 MMCCIWPSFFIVAVGPAVLKVMKVWGQ 319
>gi|83312845|ref|YP_423109.1| Flp pilus assembly protein TadC [Magnetospirillum magneticum AMB-1]
gi|82947686|dbj|BAE52550.1| Flp pilus assembly protein TadC [Magnetospirillum magneticum AMB-1]
Length = 339
Score = 222 bits (566), Expect = 7e-56, Method: Composition-based stats.
Identities = 116/298 (38%), Positives = 183/298 (61%), Gaps = 6/298 (2%)
Query: 34 PSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKS----LRNFVKKLNL 89
P L R+K+V+ R L ++Q L + A+SR R + +R + +L L
Sbjct: 44 PLLARDRRASRIKAVSNRRRELSERQKAELDQARATSRRRGARPQRRVALMRAVIDRLKL 103
Query: 90 KAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLR 149
+ +L + + +L AG+RS+ + + R+ +P+I L LG+I+ E P +R
Sbjct: 104 QDLLEAKALRAQLACAGWRSQAAPLTFIFARVALPVILLALGLIYATTL--FDEQPLMIR 161
Query: 150 VGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAE 209
+ +G P++W++N VQKRQ ++ RA+PDALDL++ICV++G+S++ AL RV E
Sbjct: 162 ALILAAAMGIGALLPNIWLTNAVQKRQMALSRAFPDALDLIVICVDAGLSVETALGRVTE 221
Query: 210 DIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIG 269
++ + ++EE+ LT AEL+FL +R+ A+ENF RT + V++ ALIQS++YGT +
Sbjct: 222 EMMISAPEMAEEIGLTAAELAFLADRRHAWENFAERTGLPQVKSLATALIQSEKYGTPVA 281
Query: 270 DSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
+L+V+ E R R+ AEKKAA+L KLTVPMI+FFLPVL L+I GPA + + MK
Sbjct: 282 QALKVISQENREGRMAAAEKKAAALPAKLTVPMIVFFLPVLFLIIAGPAAIQVSGMMK 339
>gi|269966900|ref|ZP_06180973.1| putative tight adherence TadC-related transmembrane protein [Vibrio
alginolyticus 40B]
gi|269828567|gb|EEZ82828.1| putative tight adherence TadC-related transmembrane protein [Vibrio
alginolyticus 40B]
Length = 313
Score = 222 bits (565), Expect = 7e-56, Method: Composition-based stats.
Identities = 68/273 (24%), Positives = 127/273 (46%), Gaps = 6/273 (2%)
Query: 57 KQQITSLQKDSASSRLRTR-DSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNI 115
K+++ L D + S +L + + + + NKL AGF +L++
Sbjct: 46 KRKLAELSGDKKEVSHHNKKMSDTLESLAPLTSPTSEKERQTTRNKLMHAGFHESNALSM 105
Query: 116 LLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKR 175
++ V I+ +++ + F + + + L ++G P + +V KR
Sbjct: 106 FYAIKSVTTILGVMVAALVYFSVPE-----SKYLYTYMALSVFIGLLFPDFILRRMVNKR 160
Query: 176 QSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNR 235
Q +I+ PD LDLL++C ESG+ + ALRRVA+++ L++E+ ++
Sbjct: 161 QQAIRAGVPDMLDLLVVCTESGLGFNAALRRVADELVISHPELADEIDTVCNKIKAGKPM 220
Query: 236 QVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLG 295
A RT ++ + L + R G S+ +SLR + R +R AE+ AA +
Sbjct: 221 PEALRELVLRTGLEELMGLVSMLSHASRIGGSLVNSLREYTEDYRDKRQQAAEEIAAKIP 280
Query: 296 PKLTVPMIIFFLPVLILVIIGPAILSIIDTMKD 328
K+ PM++F P +V IGPA++S+ + +
Sbjct: 281 VKMMFPMVLFIWPCFFIVAIGPALISLAEAFSN 313
>gi|78186531|ref|YP_374574.1| TadC protein [Chlorobium luteolum DSM 273]
gi|78166433|gb|ABB23531.1| TadC protein [Chlorobium luteolum DSM 273]
Length = 313
Score = 221 bits (564), Expect = 9e-56, Method: Composition-based stats.
Identities = 76/316 (24%), Positives = 159/316 (50%), Gaps = 10/316 (3%)
Query: 13 ELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRL 72
EL + + + +L+Y + + + L KR+ +A ++ R +++ K + S+ +
Sbjct: 6 ELLAIVLSGAAAVALVYVLYDWA-AAYALNKRISGIAG-KDTARTPAVSAGTKAANSATV 63
Query: 73 RTRDSKSLRNFVKKLNL-KAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILG 131
++ N + +L+L + + K AG RS+ + V+ ++ ++
Sbjct: 64 -----GNVINILSRLSLPEEGWQSSAVQLKFLQAGIRSKNAPRYYFAVKTLLTVVLP--A 116
Query: 132 IIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLL 191
+ +F Y P + V+ G+ P + + + Q+R ++ + PD +DL++
Sbjct: 117 ALGLFLYFFRPGVPLTQSLLLVLSTAAAGYYIPELALRFITQQRHERMRNSLPDMIDLMV 176
Query: 192 ICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCV 251
+C ESG+ ID A+ R++ ++ + L++E L++ E+ R A N RT + +
Sbjct: 177 VCTESGMGIDSAIARISREMARGNPDLAQEFYLSVLEIRAGATRIEALRNLALRTNLKDM 236
Query: 252 RNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLI 311
+ +Q+D++GT + +SLRV RS R AE+ AA + K+T+P+++F P L+
Sbjct: 237 NDLVTMFVQADKFGTGMAESLRVQSDMLRSRRTQRAEEMAAKIPVKMTIPLVLFIFPTLL 296
Query: 312 LVIIGPAILSIIDTMK 327
+V++GPAI+ I++
Sbjct: 297 MVLLGPAIIQIMEVFS 312
>gi|254229337|ref|ZP_04922754.1| bacterial type II secretion system protein F domain [Vibrio sp.
Ex25]
gi|262393424|ref|YP_003285278.1| type II/IV secretion system protein TadC associated with Flp pilus
assembly [Vibrio sp. Ex25]
gi|151938145|gb|EDN56986.1| bacterial type II secretion system protein F domain [Vibrio sp.
Ex25]
gi|262337018|gb|ACY50813.1| type II/IV secretion system protein TadC associated with Flp pilus
assembly [Vibrio sp. Ex25]
Length = 313
Score = 221 bits (563), Expect = 1e-55, Method: Composition-based stats.
Identities = 67/273 (24%), Positives = 127/273 (46%), Gaps = 6/273 (2%)
Query: 57 KQQITSLQKDSASSRLRTR-DSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNI 115
K+++ L D + + +L + + + + NKL AGF +L++
Sbjct: 46 KRKLAELSGDKKEVSHHNKKMADTLESLAPLTSPTSEKERQTTRNKLMHAGFHESNALSM 105
Query: 116 LLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKR 175
++ V I+ +++ + F + + + L ++G P + +V KR
Sbjct: 106 FYAIKSVTTILGVMVAALVYFSIPE-----SKYLYTYMALSVFIGLLIPDFILRRMVNKR 160
Query: 176 QSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNR 235
Q +I+ PD LDLL++C ESG+ + ALRRVA+++ L++E+ ++
Sbjct: 161 QQAIRAGVPDMLDLLVVCTESGLGFNAALRRVADELVISHPELADEIDTVCNKIKAGKPM 220
Query: 236 QVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLG 295
A RT ++ + L + R G S+ +SLR + R +R AE+ AA +
Sbjct: 221 PEALRELVLRTGLEELMGLVSMLSHASRIGGSLVNSLREYTEDYRDKRQQAAEEIAAKIP 280
Query: 296 PKLTVPMIIFFLPVLILVIIGPAILSIIDTMKD 328
K+ PM++F P +V IGPA++S+ + +
Sbjct: 281 VKMMFPMVLFIWPCFFIVAIGPALISLAEAFSN 313
>gi|193213109|ref|YP_001999062.1| type II secretion system protein [Chlorobaculum parvum NCIB 8327]
gi|193086586|gb|ACF11862.1| type II secretion system protein [Chlorobaculum parvum NCIB 8327]
Length = 313
Score = 221 bits (563), Expect = 2e-55, Method: Composition-based stats.
Identities = 71/323 (21%), Positives = 152/323 (47%), Gaps = 11/323 (3%)
Query: 8 LFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDS 67
+ ++ + + ++ S+++A +KR+ +
Sbjct: 1 MPTTLQILTIVLSGAAVASVVFAFYS-LGVDNAFKKRL-------TQIFSGSGAPPADKP 52
Query: 68 ASSRLRTRDSKSLRNFVKKLNLK-AILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPII 126
+S ++++ ++ N + KL+L + K AG R++ + ++ ++ ++
Sbjct: 53 SSKPVKSQRVATVVNILSKLSLPDEGWQSSAVRVKFLQAGIRNQNAPQYYFAIKTLLTLV 112
Query: 127 FLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDA 186
F +L + +F + + +L G+ P + + + Q+R ++ PD
Sbjct: 113 FPVL--LALFLVLNQPKLQLIHIILFALLTAAAGYYLPELLLRFITQRRIERMRNGLPDM 170
Query: 187 LDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRT 246
++L++IC E+G+SID A R++ ++ LS+E L+ E+ R A N R
Sbjct: 171 IELMVICTEAGMSIDAASTRISREMARSYPDLSQEFYLSSLEMRAGATRLDALRNMALRV 230
Query: 247 QMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFF 306
++ + + LIQ+D++GTS+ DSLRV R+ R AE+ A + K+ +P+I+F
Sbjct: 231 GLEELEDLVSVLIQADKFGTSLADSLRVHSDVMRTRRSQRAEELANKVPVKMLLPLILFI 290
Query: 307 LPVLILVIIGPAILSIIDTMKDH 329
P L++V++GPAI+ ++D +
Sbjct: 291 FPTLLMVLLGPAIIQLLDVLSKQ 313
>gi|168702877|ref|ZP_02735154.1| probable secretion system protein TadC [Gemmata obscuriglobus UQM
2246]
Length = 319
Score = 219 bits (559), Expect = 4e-55, Method: Composition-based stats.
Identities = 87/311 (27%), Positives = 154/311 (49%), Gaps = 12/311 (3%)
Query: 18 ITTAVSIFS-LIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRD 76
I V+I + + + + S + + E+R++ + R + + ++ S R +
Sbjct: 15 ILVFVAIMAGTFWLLSLISSRNSQAEERLERIG------RPKSLVEIEMSQGESGNRFKG 68
Query: 77 -SKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWI 135
+ N + + L +I +L AGFRSE + + +R+V ++FL+ + +
Sbjct: 69 IKDAFSNLGGVMEPRTELEKNSIRIQLANAGFRSENAAGVYQGIRVVCLVVFLLPALFFF 128
Query: 136 FGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVE 195
D + + +G +GF P + + +L RQ I PDALDLL++CVE
Sbjct: 129 LLKDGFTLKS----IEWTVALGGMGFYLPQMGLYHLRSTRQKEIFLTLPDALDLLVVCVE 184
Query: 196 SGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNAT 255
SG+ +D ALR+V +++ G + + EE L +L R+ + RT +D VR+
Sbjct: 185 SGLGLDAALRKVTDEMKGHAKTICEEFSLANLQLQMGRPRREVLHDLGVRTGVDDVRSLA 244
Query: 256 QALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVII 315
LIQ+DR+G+SI +LRV R R AE+KAA +L P+++F P + +V++
Sbjct: 245 AILIQADRFGSSIAQALRVQSDSMRVRRRQIAEEKAAKTAVQLIFPLVLFIFPSIFVVLV 304
Query: 316 GPAILSIIDTM 326
GPA + I +
Sbjct: 305 GPAAIQIHKNL 315
>gi|163751752|ref|ZP_02158970.1| hypothetical putative tight adherence TadC-related transmembrane
protein [Shewanella benthica KT99]
gi|161328404|gb|EDP99563.1| hypothetical putative tight adherence TadC-related transmembrane
protein [Shewanella benthica KT99]
Length = 322
Score = 219 bits (559), Expect = 4e-55, Method: Composition-based stats.
Identities = 83/324 (25%), Positives = 153/324 (47%), Gaps = 22/324 (6%)
Query: 10 DATELAVAITTAVSIFSLIYAVVIPSLGSG---ELEKRMKSVAVEREILRKQQITSLQKD 66
D + A+ +I + A+ I +G L KR+K + Q
Sbjct: 14 DPEHVKWAVYVMAAIAGITLAISISLFITGIYSPLRKRLKIIN--------------QTG 59
Query: 67 SASSRLRTRDSKSLRNFVKKLNLKA--ILVDENIVNKLRAAGFRSEYSLNILLVVRLVVP 124
RT + ++ + + ++ + L +++ L AG SE +L + VRL++
Sbjct: 60 EGHHMTRTDVNATIEHGIGRMASRTPLNLTNDDTRRLLIHAGLHSENALAVFSSVRLIL- 118
Query: 125 IIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWP 184
LI + + E + V V L+ + PS+ + +L +R +++ +P
Sbjct: 119 --LLISAGLSVLILSLFPEISGMMSVYVVALMVGGAYLLPSMVLQHLASRRMKNLRAGFP 176
Query: 185 DALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYN 244
DALDLL++C E+G+ + AL+RVA ++ L+ E+ L +++ +VA + F
Sbjct: 177 DALDLLVVCCEAGLGLLAALQRVANELAISHASLASELDLVCSKVRAGLTIKVALQEFTE 236
Query: 245 RTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMII 304
RT ++ ++ A+ QS R GT I +LR+ E R +RL +AE++AA L K+ PM++
Sbjct: 237 RTGLEDIKGLNSAISQSIRLGTGIAATLRIFSDEYRDKRLQDAEEQAAKLAVKMIFPMML 296
Query: 305 FFLPVLILVIIGPAILSIIDTMKD 328
P +V +GPA+L ++
Sbjct: 297 CIWPSFFIVAVGPAVLKVMKVWGQ 320
>gi|315181052|gb|ADT87966.1| Flp pilus assembly protein TadC [Vibrio furnissii NCTC 11218]
Length = 318
Score = 218 bits (556), Expect = 8e-55, Method: Composition-based stats.
Identities = 71/309 (22%), Positives = 144/309 (46%), Gaps = 13/309 (4%)
Query: 19 TTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSK 78
++ LI +V + +G+ ++R++ ++ +++ ++ R +
Sbjct: 22 LILIATVLLIMSVALIVVGTKAP--------IQRQLEEIRKAGTVKTPGNLTKKRDKIHN 73
Query: 79 SLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGY 138
+L + ++ K I E++ ++L AG+ +LN ++++ + + + + F Y
Sbjct: 74 TLESIAPIMSPKNIKERESVRHQLMHAGYHDASALNTFYALKVLSTLAGVSISALMYFLY 133
Query: 139 DKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGI 198
+ V+ +G P+ + +V+KR+S IK PDALDLL++C ESG+
Sbjct: 134 PDMKNLKL-----IVVFSVAMGLFLPNFLLDRMVKKRKSRIKGGIPDALDLLVVCTESGL 188
Query: 199 SIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQAL 258
+ ALRRVA+++ L++E+ A++ A RT + + L
Sbjct: 189 GFNAALRRVADELMISHPDLADELDTVCAKIKAGVEMSEAMAQLVERTGLTEISGLVSML 248
Query: 259 IQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPA 318
+ R G SI +LR + R +R E E+ AA + K+ P+++F P +V +GP+
Sbjct: 249 AHASRIGGSISQTLRDYTEDFRDKRNQEIEEIAAKIPTKMIFPLLLFIWPCFFIVAVGPS 308
Query: 319 ILSIIDTMK 327
+LS+
Sbjct: 309 MLSLTAHFG 317
>gi|260771470|ref|ZP_05880395.1| type II/IV secretion system protein TadC associated with Flp pilus
assembly [Vibrio furnissii CIP 102972]
gi|260613596|gb|EEX38790.1| type II/IV secretion system protein TadC associated with Flp pilus
assembly [Vibrio furnissii CIP 102972]
Length = 318
Score = 218 bits (556), Expect = 8e-55, Method: Composition-based stats.
Identities = 71/309 (22%), Positives = 144/309 (46%), Gaps = 13/309 (4%)
Query: 19 TTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSK 78
++ LI +V + +G+ ++R++ ++ +++ ++ R +
Sbjct: 22 LILIATVLLIMSVALIVVGTKAP--------IQRQLEEIRKEGTVKTPGNLAKKRDKIHN 73
Query: 79 SLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGY 138
+L + ++ K I E++ ++L AG+ +LN ++++ + + + + F Y
Sbjct: 74 TLESIAPIMSPKNIKERESVRHQLMHAGYHDASALNTFYALKVLSTLAGVSISALMYFLY 133
Query: 139 DKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGI 198
+ V+ +G P+ + +V+KR+S IK PDALDLL++C ESG+
Sbjct: 134 PDMKNLKL-----IVVFSVAMGLFLPNFLLDRMVKKRKSRIKGGIPDALDLLVVCTESGL 188
Query: 199 SIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQAL 258
+ ALRRVA+++ L++E+ A++ A RT + + L
Sbjct: 189 GFNAALRRVADELMISHPDLADELDTVCAKIKAGVEMSEAMAQLVERTGLTEISGLVSML 248
Query: 259 IQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPA 318
+ R G SI +LR + R +R E E+ AA + K+ P+++F P +V +GP+
Sbjct: 249 AHASRIGGSISQTLRDYTEDFRDKRNQEIEEIAAKIPTKMIFPLLLFIWPCFFIVAVGPS 308
Query: 319 ILSIIDTMK 327
+LS+
Sbjct: 309 MLSLTAHFG 317
>gi|254506677|ref|ZP_05118817.1| Flp pilus assembly protein TadC [Vibrio parahaemolyticus 16]
gi|219550258|gb|EED27243.1| Flp pilus assembly protein TadC [Vibrio parahaemolyticus 16]
Length = 314
Score = 218 bits (556), Expect = 9e-55, Method: Composition-based stats.
Identities = 69/329 (20%), Positives = 143/329 (43%), Gaps = 19/329 (5%)
Query: 1 MPHYFFDLFDATELAVAITTAVSIFSLIYAVVIPSLG-SGELEKRMKSVAVEREILRKQQ 59
+ + + ++ +++ + + LG ++ R++ + ++
Sbjct: 4 LLQFLDSFQINEQTFFLSVILIATVLVMFTLFLVVLGTRAPMKVRLEEL---------KK 54
Query: 60 ITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVV 119
+K RL +L + L +++ +L AG+ +L + +
Sbjct: 55 TAPGEKLKKGRRL----GNTLDSIAPTLTPSNSKESQSLRQQLMHAGYHDANALTVFYAI 110
Query: 120 RLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSI 179
+ + ++ + + + F + A++ VG P++ ++ V KRQS I
Sbjct: 111 KGMAILVGVGIAAMLYFFVPDMSNLKL-----AMVASVAVGLYTPNIGLNYFVNKRQSRI 165
Query: 180 KRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAF 239
+ PDALDLL++C ESG+ ALRRVA+++ ++E+ ++ AF
Sbjct: 166 RGGVPDALDLLVVCTESGLGFSAALRRVADELMISHPDFADELDTVCVKIKAGVEMSDAF 225
Query: 240 ENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLT 299
++ RT + + L + R G S+ +LR + R +R E E+ AA + K+
Sbjct: 226 DDLVERTGIKELAGLVTMLSHASRIGGSLSQTLREYTEDFRDKRNQEIEEIAAKIPTKMI 285
Query: 300 VPMIIFFLPVLILVIIGPAILSIIDTMKD 328
P+++F P +V IGP++LSI T+ +
Sbjct: 286 FPLLLFIWPCFFIVAIGPSMLSITSTLGN 314
>gi|145219378|ref|YP_001130087.1| type II secretion system protein [Prosthecochloris vibrioformis DSM
265]
gi|145205542|gb|ABP36585.1| type II secretion system protein [Chlorobium phaeovibrioides DSM
265]
Length = 313
Score = 218 bits (556), Expect = 9e-55, Method: Composition-based stats.
Identities = 79/316 (25%), Positives = 160/316 (50%), Gaps = 10/316 (3%)
Query: 13 ELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRL 72
EL + + ++ S+++ + +L L+KR+ +A K + + S S
Sbjct: 6 ELLAIVLSGATVASIVFVLYNWALAH-TLQKRLTGIAG------KNPDPTQNEPSGSEAF 58
Query: 73 RTRDSKSLRNFVKKLNL-KAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILG 131
++ S+ N + KL+L + + K AG RS+ + V+ ++ ++ ++
Sbjct: 59 KSAKVTSVINTLSKLSLPEEGWQSSAVQLKFLQAGIRSKNAPRYYFAVKTLLTVVLPVVL 118
Query: 132 IIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLL 191
++++ + PF + V+ G+ P + + + QKR ++ + PD +DL++
Sbjct: 119 GLFLYFLRPGV--PFTQSMMLVLSTAAAGYYLPELALRFITQKRHERMRDSLPDMIDLMV 176
Query: 192 ICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCV 251
IC ESG+ ID A+ R++ ++ + L++E L++ E+ R A N RT++ +
Sbjct: 177 ICTESGMGIDSAIARISREMARGNPDLAQEFYLSVLEIRAGATRIEALRNLALRTRLKDM 236
Query: 252 RNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLI 311
+ +Q+ ++GT I +LRV RS R AE+ AA + K+TVP+++F P L+
Sbjct: 237 DDLVTMFVQAHKFGTGIAQALRVQSDMLRSRRTQRAEEMAAKIPVKMTVPLVLFIFPTLL 296
Query: 312 LVIIGPAILSIIDTMK 327
+V++GPAI+ I++
Sbjct: 297 MVLLGPAIIQIMEIFS 312
>gi|328953758|ref|YP_004371092.1| Type II secretion system F domain protein [Desulfobacca acetoxidans
DSM 11109]
gi|328454082|gb|AEB09911.1| Type II secretion system F domain protein [Desulfobacca acetoxidans
DSM 11109]
Length = 302
Score = 217 bits (554), Expect = 1e-54, Method: Composition-based stats.
Identities = 80/282 (28%), Positives = 142/282 (50%), Gaps = 9/282 (3%)
Query: 50 VEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLN-----LKAILVDENIVNKLRA 104
+++ + + +A + R + F K+LN K + + + KL
Sbjct: 22 IQKTTPSQGRRLFSSNSAAIEVNKRRHNIISEQFSKRLNSIMGFAKDPVKAKELKKKLML 81
Query: 105 AGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAP 164
AG + + L +L P+ +I+GI + L ++ + L+ GF P
Sbjct: 82 AGCYGSRAFSRFLFFKLTSPLAAIIIGIPLSLNLNVGL----IMKPVFLYLLLAFGFYLP 137
Query: 165 SVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLL 224
++ +++ + RQ I PDALDLL++CVE+G+ ++ A++RVA+D+ + LS E +
Sbjct: 138 NLVLNHKISARQKKISEGLPDALDLLVVCVEAGLGLNAAMKRVADDLKMNNPVLSLEFNM 197
Query: 225 TIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERL 284
E+ +R+ A N RT ++ + LIQ+DR+GTSI +LRV R+ R
Sbjct: 198 LNLEILAGLDREQALRNLAERTGVEELSTLCAILIQADRFGTSIAQALRVQSDTMRTNRR 257
Query: 285 MEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
E+ AA KL P+I+F P L++VI+GPA++ + ++M
Sbjct: 258 QRLEELAARTPVKLVFPLILFIFPALVVVILGPAVIQVAESM 299
>gi|258621455|ref|ZP_05716489.1| Flp pilus assembly protein TadC [Vibrio mimicus VM573]
gi|258627496|ref|ZP_05722277.1| Flp pilus assembly protein TadC [Vibrio mimicus VM603]
gi|262171240|ref|ZP_06038918.1| type II/IV secretion system protein TadC associated with Flp pilus
assembly [Vibrio mimicus MB-451]
gi|258580302|gb|EEW05270.1| Flp pilus assembly protein TadC [Vibrio mimicus VM603]
gi|258586843|gb|EEW11558.1| Flp pilus assembly protein TadC [Vibrio mimicus VM573]
gi|261892316|gb|EEY38302.1| type II/IV secretion system protein TadC associated with Flp pilus
assembly [Vibrio mimicus MB-451]
Length = 314
Score = 217 bits (554), Expect = 1e-54, Method: Composition-based stats.
Identities = 74/324 (22%), Positives = 144/324 (44%), Gaps = 18/324 (5%)
Query: 5 FFDLFDATELAVAITTAVSIFSLIYAVVIPSLG-SGELEKRMKSVAVEREILRKQQITSL 63
F D+ + VS L+ V + G ++K+++ + E L
Sbjct: 8 FSDIQVNDQWVFLALILVSTSLLVVTVALVFSGNRAPMKKKLEQINKE-----------L 56
Query: 64 QKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVV 123
++ + R D+ +L + K +I +L AGF + +L++ ++
Sbjct: 57 SGNTLKKKNRKVDN-TLESLAPISAGKESKERASIRTQLMHAGFHNRDALSLFYALKTSF 115
Query: 124 PIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAW 183
I+ + F + + ++ G P++ + + V++RQ +I+
Sbjct: 116 AILGFSGAALVFFLLPDMDNGTLVM-----LVSVAGGLYLPNMGLHHFVKERQRTIRAGV 170
Query: 184 PDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFY 243
PDALDLL++C ESG+ + ALR+VA+++ ++E+ A++ AF+
Sbjct: 171 PDALDLLVVCTESGLGFNAALRKVADELAISHPEFADELDTVCAKIKAGVEMHTAFDELV 230
Query: 244 NRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMI 303
RT + +R L + + G S+ +LR + R +R E E+ AA + K+ P++
Sbjct: 231 ARTGLTEIRGLVNMLSHASKIGGSLSQTLRDYTEDFRDKRNQEVEEIAAKIPTKMIFPLL 290
Query: 304 IFFLPVLILVIIGPAILSIIDTMK 327
+F P +V IGPA+LS+ D +
Sbjct: 291 LFIWPCFFIVAIGPALLSLSDALG 314
>gi|262165914|ref|ZP_06033651.1| type II/IV secretion system protein TadC associated with Flp pilus
assembly [Vibrio mimicus VM223]
gi|262025630|gb|EEY44298.1| type II/IV secretion system protein TadC associated with Flp pilus
assembly [Vibrio mimicus VM223]
Length = 314
Score = 217 bits (554), Expect = 2e-54, Method: Composition-based stats.
Identities = 74/324 (22%), Positives = 145/324 (44%), Gaps = 18/324 (5%)
Query: 5 FFDLFDATELAVAITTAVSIFSLIYAVVIPSLG-SGELEKRMKSVAVEREILRKQQITSL 63
F D+ + VS L+ V + G ++K+++ + E L
Sbjct: 8 FSDIQVNDQWVFLALILVSTSLLVVTVALVFSGNRAPMKKKLEQINKE-----------L 56
Query: 64 QKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVV 123
++ + R D+ +L + K +I +L AGF + +L++ ++
Sbjct: 57 SGNTLKKKNRKVDN-TLESLAPISAGKESKERASIRTQLMHAGFHNRDALSLFYALKTSF 115
Query: 124 PIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAW 183
I+ + + F + + ++ G P++ + + V++RQ +I+
Sbjct: 116 AILGVSGAALVFFLLPDMDNGTLVM-----LVSVAGGLYLPNMGLHHFVKERQRTIRAGV 170
Query: 184 PDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFY 243
PDALDLL++C ESG+ + ALR+VA+++ ++E+ A++ AF+
Sbjct: 171 PDALDLLVVCTESGLGFNAALRKVADELTISHPEFADELDTVCAKIKAGVEMHTAFDELV 230
Query: 244 NRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMI 303
RT + +R L + + G S+ +LR + R +R E E+ AA + K+ P++
Sbjct: 231 ARTGLTEIRGLVNMLSHASKIGGSLSQTLRDYTEDFRDKRNQEVEEIAAKIPTKMIFPLL 290
Query: 304 IFFLPVLILVIIGPAILSIIDTMK 327
+F P +V IGPA+LS+ D +
Sbjct: 291 LFIWPCFFIVAIGPALLSLSDALG 314
>gi|120602154|ref|YP_966554.1| type II secretion system protein [Desulfovibrio vulgaris DP4]
gi|120562383|gb|ABM28127.1| type II secretion system protein [Desulfovibrio vulgaris DP4]
gi|311234268|gb|ADP87122.1| Type II secretion system F domain protein [Desulfovibrio vulgaris
RCH1]
Length = 323
Score = 217 bits (553), Expect = 2e-54, Method: Composition-based stats.
Identities = 80/288 (27%), Positives = 138/288 (47%), Gaps = 13/288 (4%)
Query: 50 VEREILRKQQITSLQKDSASSR-------LRTRDSKSLRNFVKKLNLKAILVDE----NI 98
R I R Q + D + L + + ++L + I +
Sbjct: 33 SRRRIDRMQSRVARHLDRNAPTAAASATTLSDDMRRGINAMAERLGQRVINEGDTELTEA 92
Query: 99 VNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGY 158
L AG+R+ + + V+ + + L++G+ + P + I
Sbjct: 93 GMALARAGYRNRTAPRVFWGVKAGLTVAGLLMGLTVRLLLGD--DVPAGMVALLFIGPAV 150
Query: 159 VGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPL 218
G P++W+S+ +++R+ I A PDALDLL++CVE+G+ +DQAL RVA+++ S L
Sbjct: 151 TGLYLPNIWLSSRIKERRQEIINALPDALDLLVVCVEAGMGLDQALARVAKELQSTSPVL 210
Query: 219 SEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSE 278
+EE+ L+I EL +R +N R ++ V + +IQ+D +GTSI +LRV
Sbjct: 211 AEELQLSILELRAGKSRADTLKNLAARVAIEDVNSLVTLIIQADAFGTSIASTLRVYSDT 270
Query: 279 TRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
R+ R AE+ AA + KL P++ LP L + I+GPA + ++
Sbjct: 271 MRTTRFQRAEEIAAKMPVKLLFPLVFCILPALFVTIMGPAFIKLMQVF 318
>gi|260776710|ref|ZP_05885605.1| flp pilus assembly protein TadC [Vibrio coralliilyticus ATCC
BAA-450]
gi|260607933|gb|EEX34198.1| flp pilus assembly protein TadC [Vibrio coralliilyticus ATCC
BAA-450]
Length = 314
Score = 217 bits (553), Expect = 2e-54, Method: Composition-based stats.
Identities = 72/311 (23%), Positives = 139/311 (44%), Gaps = 19/311 (6%)
Query: 19 TTAVSIFSLIYAVVIPSLG-SGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDS 77
++ +++ + + +G L+ +++ + +Q T K S RL
Sbjct: 22 LILLATVLVVFTLSLLLVGPKSPLKLKLEQL---------RQSTRSDKLKKSRRL----D 68
Query: 78 KSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFG 137
+L + + E+I KL AG+ +L + + + + L L + F
Sbjct: 69 HTLESLAPVMKPSNSKESESIRQKLMHAGYHDANALTVFYAFKGMTVAVGLGLAAGFYF- 127
Query: 138 YDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESG 197
L + ++ G P++ + +LV+KRQS I+ PDALDL+++C ESG
Sbjct: 128 ----LTPDMAMLNLVMVASVGGGLYVPNILLGHLVKKRQSRIRGGIPDALDLMVVCTESG 183
Query: 198 ISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQA 257
+ + ALRRVA+++ ++E+ +++ AF + RT + +
Sbjct: 184 LGFNSALRRVADEVAISHPDFADELDTVCVKINAGVEMSDAFNDLIERTGLIEIAGLVTM 243
Query: 258 LIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGP 317
L + R G S+ +LR + R +R E E+ AA + K+ P+++F P +V IGP
Sbjct: 244 LAHASRIGGSLAQTLREYTDDYRDKRNQEVEEIAAKIPTKMIFPLLLFIWPCFFIVAIGP 303
Query: 318 AILSIIDTMKD 328
++L T+ +
Sbjct: 304 SMLLFTSTLGN 314
>gi|299067812|emb|CBJ39023.1| Tad secretion system, secretion accessory protein [Ralstonia
solanacearum CMR15]
Length = 315
Score = 217 bits (552), Expect = 2e-54, Method: Composition-based stats.
Identities = 87/315 (27%), Positives = 155/315 (49%), Gaps = 11/315 (3%)
Query: 16 VAITTAVSIFSLIYAVVIP---SLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRL 72
V I F++++ V+ L L++R+ + +RE+ R Q + RL
Sbjct: 4 VHIVLLAGTFAIVFGAVLAAMTLLRPSTLDRRLGQI--DRELPRTQPRDDGHDRAWLRRL 61
Query: 73 RTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGI 132
+ + K K ++ + AG+R+ ++ + ++ ++ +L
Sbjct: 62 ----EQLAKPLAKASLPKEGWEGSSLRQRFVHAGWRAPEAIAVYFGIKTILTFGLPLL-- 115
Query: 133 IWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLI 192
+W ++ + + VGF P+V +S ++ RQ I ++PD+LDL+++
Sbjct: 116 LWAGLVGRINADQQSQFMSLLFGAAVVGFYLPNVLLSLKIKYRQREIFESFPDSLDLIMV 175
Query: 193 CVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVR 252
CVE+G+S+D A+ RV +++ ++EE L EL R+ A N RT +D V
Sbjct: 176 CVEAGLSLDAAILRVVDEMRTARPVMAEEYELLTLELRAGLPREKALRNLAARTGVDDVS 235
Query: 253 NATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLIL 312
LIQ+DR+GTS+ DSLRV R++R M AE++AA +G K+ P+I P L +
Sbjct: 236 MLVAMLIQADRFGTSVADSLRVHSDMLRTKRHMLAEERAAKIGTKVLFPLIFCIFPSLYV 295
Query: 313 VIIGPAILSIIDTMK 327
V++GPA L +I +
Sbjct: 296 VLLGPAALQMIAALG 310
>gi|32473987|ref|NP_866981.1| secretion system protein TadC [Rhodopirellula baltica SH 1]
gi|32444524|emb|CAD74523.1| probable secretion system protein TadC [Rhodopirellula baltica SH
1]
Length = 328
Score = 217 bits (552), Expect = 3e-54, Method: Composition-based stats.
Identities = 86/314 (27%), Positives = 154/314 (49%), Gaps = 12/314 (3%)
Query: 19 TTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSK 78
T ++IF+ + + L + + + A R K ++ +A + RT++
Sbjct: 19 LTTIAIFASVTSFAWFVLSKVGGDDQ--APAESRLERMKDAKRGIRDIAADEKQRTKNEA 76
Query: 79 SLRNFVKKLNLKAILVDEN------IVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGI 132
K A V N + KL AGFR E + I +++LV + L+LG
Sbjct: 77 LTEALEKAATPIASSVSGNEEEMGKLREKLINAGFRRESAPVIFKLIQLVCTGVGLMLGG 136
Query: 133 IWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLI 192
+ +L+ Q + ++L GF PS+ + + KR+ I PDALDL+++
Sbjct: 137 V----TGAVLDGLTQGMIIKLLLGMIGGFMIPSLILGFMASKRREKIFLGLPDALDLMVV 192
Query: 193 CVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVR 252
CVE+G+ +DQALR+VAE++ + EE ++ +L R R+ +D ++
Sbjct: 193 CVEAGLGLDQALRKVAEEMQKSHKAIGEEFSISNHQLQLGSPRSEVLSGLGYRSGVDDLK 252
Query: 253 NATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLIL 312
LIQ+D++G+S+ +LRV R++R AE+KAA K+ P+++F P + +
Sbjct: 253 QLASILIQADKFGSSVAQALRVQSDSMRTKRRQIAEEKAAKTAVKMIFPLVLFIFPGIFV 312
Query: 313 VIIGPAILSIIDTM 326
V++GPA +++ M
Sbjct: 313 VLVGPAAINMYRQM 326
>gi|253996761|ref|YP_003048825.1| type II secretion system protein [Methylotenera mobilis JLW8]
gi|253983440|gb|ACT48298.1| type II secretion system protein [Methylotenera mobilis JLW8]
Length = 312
Score = 216 bits (551), Expect = 3e-54, Method: Composition-based stats.
Identities = 83/319 (26%), Positives = 157/319 (49%), Gaps = 15/319 (4%)
Query: 9 FDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSA 68
+ ++ + +++F + + I + L R+K + ++ ++
Sbjct: 1 MNTIQIIYLVLIFITVFVVAMVI-IGQFSTSPLGARLKVLKDDK-----------PDEND 48
Query: 69 SSRLRTRDSKSLRNFVKKLNL-KAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIF 127
+ L + KL+L K + + AG RS + + ++ +
Sbjct: 49 DEPVWISRIVKLTGPIAKLSLPKEGWEHSQLRIRFMNAGLRSPSVPILFFAAKTILTLAL 108
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
L +++ +++ + +IL+ +G+ P+ +S+ + R+ I ++PDAL
Sbjct: 109 PSLFLLYTVISGSVVKPNNLM--MMLILLAAIGYFLPNAVLSHRIDSRKREIFESFPDAL 166
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQ 247
DL+++CVESG+ +D AL RV E++ +S L EE+ L EL +R+ A N RT
Sbjct: 167 DLIIVCVESGLGLDAALARVGEEMHVRSPTLGEELHLINLELRAGSSRERALRNLALRTG 226
Query: 248 MDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFL 307
++ V L+QSDR+GT+I DSLRV R++R + AE+ AA + KL P+I F
Sbjct: 227 VEEVDTLVAMLVQSDRFGTNISDSLRVHADSLRTKRRLLAEEAAAKIAVKLLFPLIFFIF 286
Query: 308 PVLILVIIGPAILSIIDTM 326
P ++LV++GPA ++I + +
Sbjct: 287 PSMLLVLLGPAFINIHNIL 305
>gi|28899184|ref|NP_798789.1| putative tight adherence TadC-like transmembrane protein [Vibrio
parahaemolyticus RIMD 2210633]
gi|153836802|ref|ZP_01989469.1| Flp pilus assembly protein TadC [Vibrio parahaemolyticus AQ3810]
gi|260361577|ref|ZP_05774604.1| Flp pilus assembly protein TadC [Vibrio parahaemolyticus K5030]
gi|260876734|ref|ZP_05889089.1| Flp pilus assembly protein TadC [Vibrio parahaemolyticus AN-5034]
gi|260898188|ref|ZP_05906684.1| Flp pilus assembly protein TadC [Vibrio parahaemolyticus Peru-466]
gi|260900405|ref|ZP_05908800.1| Flp pilus assembly protein TadC [Vibrio parahaemolyticus AQ4037]
gi|28807408|dbj|BAC60673.1| putative tight adherence TadC-related transmembrane protein [Vibrio
parahaemolyticus RIMD 2210633]
gi|149749948|gb|EDM60693.1| Flp pilus assembly protein TadC [Vibrio parahaemolyticus AQ3810]
gi|308089100|gb|EFO38795.1| Flp pilus assembly protein TadC [Vibrio parahaemolyticus Peru-466]
gi|308091488|gb|EFO41183.1| Flp pilus assembly protein TadC [Vibrio parahaemolyticus AN-5034]
gi|308109137|gb|EFO46677.1| Flp pilus assembly protein TadC [Vibrio parahaemolyticus AQ4037]
gi|308113997|gb|EFO51537.1| Flp pilus assembly protein TadC [Vibrio parahaemolyticus K5030]
gi|328474278|gb|EGF45083.1| putative tight adherence TadC-like transmembrane protein [Vibrio
parahaemolyticus 10329]
Length = 313
Score = 216 bits (551), Expect = 4e-54, Method: Composition-based stats.
Identities = 67/273 (24%), Positives = 127/273 (46%), Gaps = 6/273 (2%)
Query: 57 KQQITSLQKDSASSRLRTR-DSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNI 115
K+++ L D + + +L + + + + NKL AGF SL++
Sbjct: 46 KRKLAELSGDKKPLPTHNKKMADTLESLAPLTSPTSEKERQTTRNKLMHAGFHQSNSLSM 105
Query: 116 LLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKR 175
++ + I+ +++ ++ + + + L ++G P + +V KR
Sbjct: 106 FYAIKSITTILGIMIAVLVYLTVPE-----SKYLYTYMALSAFIGLLIPDFMLRRMVNKR 160
Query: 176 QSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNR 235
Q +I+ PD LDLL++C ESG+ + ALRRVA++I L++E+ ++
Sbjct: 161 QQAIRAGVPDMLDLLVVCTESGLGFNAALRRVADEIVISHPELADEVDTVCNKIQAGKPM 220
Query: 236 QVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLG 295
+ RT ++ + L + R G S+ +SLR + R +R AE+ AA +
Sbjct: 221 PESLRELVVRTGLEELMGLVSMLSHASRIGGSLVNSLREYTEDYRDKRQQAAEEIAAKIP 280
Query: 296 PKLTVPMIIFFLPVLILVIIGPAILSIIDTMKD 328
K+ PM+IF P +V IGPA++S+ + +
Sbjct: 281 VKMMFPMVIFIWPCFFIVAIGPALISLAEAFSN 313
>gi|46580529|ref|YP_011337.1| hypothetical protein DVU2124 [Desulfovibrio vulgaris str.
Hildenborough]
gi|46449948|gb|AAS96597.1| conserved hypothetical protein [Desulfovibrio vulgaris str.
Hildenborough]
Length = 284
Score = 216 bits (550), Expect = 4e-54, Method: Composition-based stats.
Identities = 76/280 (27%), Positives = 139/280 (49%), Gaps = 6/280 (2%)
Query: 51 EREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDE----NIVNKLRAAG 106
+ + R + ++++ L + + ++L + I + L AG
Sbjct: 2 QSRVARHLDRNAPTAAASATTLSDDMRRGINAMAERLGQRVINEGDTELTEAGMALARAG 61
Query: 107 FRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSV 166
+R+ + + V+ + + L++G+ + P + I G P++
Sbjct: 62 YRNRTAPRVFWGVKAGLTVAGLLMGLTVRLLLGD--DVPAGMVALLFIGPAVTGLYLPNI 119
Query: 167 WISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTI 226
W+S+ +++R+ I A PDALDLL++CVE+G+ +DQAL RVA+++ S L+EE+ L+I
Sbjct: 120 WLSSRIKERRQEIINALPDALDLLVVCVEAGMGLDQALARVAKELQSTSPVLAEELQLSI 179
Query: 227 AELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLME 286
EL +R +N R ++ V + +IQ+D +GTSI +LRV R+ R
Sbjct: 180 LELRAGKSRADTLKNLAARVAIEDVNSLVTLIIQADAFGTSIASTLRVYSDTMRTTRFQR 239
Query: 287 AEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
AE+ AA + KL P++ LP L + I+GPA + ++
Sbjct: 240 AEEIAAKMPVKLLFPLVFCILPALFVTIMGPAFIKLMQVF 279
>gi|296122167|ref|YP_003629945.1| type II secretion system protein [Planctomyces limnophilus DSM
3776]
gi|296014507|gb|ADG67746.1| type II secretion system protein [Planctomyces limnophilus DSM
3776]
Length = 312
Score = 216 bits (550), Expect = 4e-54, Method: Composition-based stats.
Identities = 86/313 (27%), Positives = 152/313 (48%), Gaps = 7/313 (2%)
Query: 17 AITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRD 76
A ++IF+ I V +L ++ R +S A +R + Q+ + +
Sbjct: 6 ATIVPLAIFASITLAVFAAL---QIFSREQSRASQRLDEFNNPLLREQQRGQKNGMSNLL 62
Query: 77 SKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIF 136
K+ K L K+ L + +L AGF S + I L ++ V ++ L+LG
Sbjct: 63 EKAAPALSKALEPKSELEQSQLKIRLANAGFHSPQAPMIYLAIKTVCLVVGLVLGGGLGM 122
Query: 137 GYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVES 196
Q + +I+ GF P ++ L+ KR+ +I PD LDLL++CVE+
Sbjct: 123 YRYG----TTQAGLTTLIIAAGAGFYLPEGVLAYLISKRKQAIFLQLPDVLDLLVVCVEA 178
Query: 197 GISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQ 256
G+ +D LRRVAE++ + + E+ + +L NR+ + RT +D V+
Sbjct: 179 GLGLDAGLRRVAEELKDTAPEICGELAMCNLQLQMGRNRRDMLHDLGVRTGVDDVKALVA 238
Query: 257 ALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIG 316
+IQ+D++G+SI +LRV R +R AE+KA ++ PM+IF P + +V++G
Sbjct: 239 IMIQADKFGSSIAQALRVQSDSMRVKRRQIAEEKAQKTAVQMLFPMVIFIFPGIFVVLVG 298
Query: 317 PAILSIIDTMKDH 329
PA + ++D + +
Sbjct: 299 PAAIKMMDQLLNK 311
>gi|327543264|gb|EGF29697.1| flp pilus assembly protein TadC [Rhodopirellula baltica WH47]
Length = 328
Score = 216 bits (550), Expect = 4e-54, Method: Composition-based stats.
Identities = 86/314 (27%), Positives = 154/314 (49%), Gaps = 12/314 (3%)
Query: 19 TTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSK 78
T ++IF+ + + L + + + A R K ++ +A + RT++
Sbjct: 19 LTTIAIFTSVTSFAWFVLSKVGGDDQ--APAESRLERMKDAKRGIRDIAADEKQRTKNEA 76
Query: 79 SLRNFVKKLNLKAILVDEN------IVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGI 132
K A V N + KL AGFR E + I +++LV + L+LG
Sbjct: 77 LTEALEKAATPIASSVSGNEEEMGKLREKLINAGFRRESAPVIFKLIQLVCTGVGLMLGG 136
Query: 133 IWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLI 192
+ +L+ Q + ++L GF PS+ + + KR+ I PDALDL+++
Sbjct: 137 V----TGAVLDGLTQGMIIKLLLGMIGGFMIPSLILGFMASKRREKIFLGLPDALDLMVV 192
Query: 193 CVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVR 252
CVE+G+ +DQALR+VAE++ + EE ++ +L R R+ +D ++
Sbjct: 193 CVEAGLGLDQALRKVAEEMQKSHKAIGEEFSISNHQLQLGSPRSEVLSGLGYRSGVDDLK 252
Query: 253 NATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLIL 312
LIQ+D++G+S+ +LRV R++R AE+KAA K+ P+++F P + +
Sbjct: 253 QLASILIQADKFGSSVAQALRVQSDSMRTKRRQIAEEKAAKTAVKMIFPLVLFIFPGIFV 312
Query: 313 VIIGPAILSIIDTM 326
V++GPA +++ M
Sbjct: 313 VLVGPAAINMYRQM 326
>gi|323499916|ref|ZP_08104875.1| Flp pilus assembly protein TadC [Vibrio sinaloensis DSM 21326]
gi|323315157|gb|EGA68209.1| Flp pilus assembly protein TadC [Vibrio sinaloensis DSM 21326]
Length = 314
Score = 216 bits (550), Expect = 5e-54, Method: Composition-based stats.
Identities = 71/327 (21%), Positives = 141/327 (43%), Gaps = 19/327 (5%)
Query: 3 HYFFDLFDATELAVAITTAVSIFSLIYAVVIPSLG-SGELEKRMKSVAVEREILRKQQIT 61
DL + V+ +++ + + +G + R++ + ++
Sbjct: 6 QILADLQIEEQTFFLGVILVATVLVMFTLFLVVVGTRAPMSVRLEEL---------KKTA 56
Query: 62 SLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRL 121
+K RL +L + L ++++ +L AG+ +L + ++
Sbjct: 57 PGEKLKKGRRL----GNTLDSIAPTLTPSNSKENQSVRQQLMHAGYHDANALTVFYAIKG 112
Query: 122 VVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKR 181
++ + + F + A+I G P+V ++ +V+KRQS I+
Sbjct: 113 AAILVGVGMAATLYFLVPDMSNLNL-----AMIFSVAFGLYIPNVGLNYVVKKRQSRIRG 167
Query: 182 AWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFEN 241
PDALDLL++C ESG+ ALRRVA+++ ++E+ ++ AFE+
Sbjct: 168 GVPDALDLLVVCTESGLGFSAALRRVADELMISHPDFADELDTVCVKIKAGVEMSDAFED 227
Query: 242 FYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVP 301
RT + + L + R G S+ +LR + R +R E E+ AA + K+ P
Sbjct: 228 LVERTGIKELAGLVTMLSHASRIGGSLSQTLREYTEDFRDKRNQEIEEIAAKIPTKMIFP 287
Query: 302 MIIFFLPVLILVIIGPAILSIIDTMKD 328
+++F P +V IGP++L + T+ +
Sbjct: 288 LLLFIWPCFFIVAIGPSMLFLTATLGN 314
>gi|294140782|ref|YP_003556760.1| Flp pilus assembly protein TadC [Shewanella violacea DSS12]
gi|293327251|dbj|BAJ01982.1| Flp pilus assembly protein TadC [Shewanella violacea DSS12]
Length = 322
Score = 215 bits (549), Expect = 5e-54, Method: Composition-based stats.
Identities = 89/322 (27%), Positives = 157/322 (48%), Gaps = 18/322 (5%)
Query: 10 DATELAVAITTAVSIFSLIYAVVIPSLGSG---ELEKRMKSVAVEREILRKQQITSLQKD 66
D + + A+ ++ + A+ + L +G L KR+KS+ T +
Sbjct: 14 DPSHVKWAVYAMAAVAGITLAISLSFLITGIYSPLRKRLKSINK----------TDAEHH 63
Query: 67 SASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPII 126
+ + + T + +K L L ++ L AG SE +L + VRL++ +I
Sbjct: 64 ISHTDVNTTIEHGIGRAARKTPLN--LSNDETRRLLIHAGLHSENALAVFSSVRLILLLI 121
Query: 127 FLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDA 186
L ++ + E + V V L+ + PS+ + NL +R ++ +PDA
Sbjct: 122 SASLSVLIL---SMFPEISGMMSVYVVALLVGGAYLLPSMVLQNLASRRMKELRAGFPDA 178
Query: 187 LDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRT 246
LDLL++C E+G+ + AL+RVA ++ V L+ E+ L +++ +VA + F +RT
Sbjct: 179 LDLLVVCCEAGLGLLAALQRVANELAISHVSLASELDLVCSKVRAGLTIKVALQEFTDRT 238
Query: 247 QMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFF 306
+D ++ A+ QS R GT I +LRV E R +RL EAE++AA L K+ PM++
Sbjct: 239 GLDDIKGLNSAISQSIRLGTGIAATLRVFSDEYRDKRLQEAEEQAAKLAVKMIFPMMLGI 298
Query: 307 LPVLILVIIGPAILSIIDTMKD 328
P +V +GPA+L ++
Sbjct: 299 WPSFFIVAVGPAVLKVMKVWGQ 320
>gi|17545369|ref|NP_518771.1| tight adherence TadC-related transmembrane protein [Ralstonia
solanacearum GMI1000]
gi|17427661|emb|CAD14180.1| probable pilus assembly tadc transmembrane protein [Ralstonia
solanacearum GMI1000]
Length = 315
Score = 215 bits (549), Expect = 5e-54, Method: Composition-based stats.
Identities = 88/315 (27%), Positives = 156/315 (49%), Gaps = 11/315 (3%)
Query: 16 VAITTAVSIFSLIYAVVIP---SLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRL 72
V I F++++ V+ L L++R+ + +RE+ R Q + + RL
Sbjct: 4 VHIVLLAGTFAIVFGAVLAALTLLRPSTLDRRLGQI--DRELPRSQPRDDGRDRAWLRRL 61
Query: 73 RTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGI 132
+ + K K ++ + AG+R+ ++ + ++ ++ +L
Sbjct: 62 ----EQLAKPLAKASLPKEGWEGSSLRQRFVHAGWRAPEAIAVYFGIKTILTFGLPLL-- 115
Query: 133 IWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLI 192
+W + + + VGF P+V +S ++ RQ I ++PD+LDL+++
Sbjct: 116 LWAGLVGRFNADQQSQFMSLLFGAAVVGFYLPNVLLSLKIKYRQREIFESFPDSLDLIMV 175
Query: 193 CVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVR 252
CVE+G+S+D A+ RV +D+ ++EE L EL +R+ A N RT +D V
Sbjct: 176 CVEAGLSLDAAILRVVDDMRTARPVMAEEYELLTLELRAGLSREKALRNLAARTGVDDVS 235
Query: 253 NATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLIL 312
LIQ+DR+GTS+ DSLRV R++R M AE++AA +G K+ P+I P L +
Sbjct: 236 MLVAMLIQADRFGTSVADSLRVHSDMLRTKRHMLAEERAAKIGTKVLFPLIFCIFPSLYV 295
Query: 313 VIIGPAILSIIDTMK 327
V++GPA L +I +
Sbjct: 296 VLLGPAALQMIAALG 310
>gi|167840869|ref|ZP_02467553.1| hypothetical protein Bpse38_29619 [Burkholderia thailandensis
MSMB43]
Length = 279
Score = 215 bits (549), Expect = 5e-54, Method: Composition-based stats.
Identities = 80/238 (33%), Positives = 134/238 (56%), Gaps = 2/238 (0%)
Query: 89 LKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQL 148
K+ + + +L AG+RS + ++ + V+ + + + ++ G L + P+ +
Sbjct: 37 PKSGWENSPLRLRLINAGWRSPGAAHLYFAAKTVLALTLPAVAMPFMIG-TALGDNPYAV 95
Query: 149 RVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVA 208
V+LIG GF P+ +S ++ RQ I +PDALDLL +CVE+G+ +D AL +VA
Sbjct: 96 S-AMVLLIGGFGFYLPNAMLSRHIRLRQRKIIEDFPDALDLLTVCVEAGLGLDAALTKVA 154
Query: 209 EDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSI 268
+++ +S +++E+ L + E+ + A N RT + V LIQ+DR+GTSI
Sbjct: 155 DELRLRSPIVADELGLMLLEIRSGFAKDAALRNLALRTGAEDVDAFCAMLIQADRFGTSI 214
Query: 269 GDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
G SLRVL R++R M AE++AA + KL P+I P L+ V++GPA + I T+
Sbjct: 215 GASLRVLSDTLRTQRRMRAEERAAKIALKLLFPLIFCIFPALLTVLLGPAFIHIYRTL 272
>gi|91788419|ref|YP_549371.1| type II secretion system protein [Polaromonas sp. JS666]
gi|91697644|gb|ABE44473.1| type II secretion system protein [Polaromonas sp. JS666]
Length = 314
Score = 215 bits (548), Expect = 7e-54, Method: Composition-based stats.
Identities = 91/319 (28%), Positives = 153/319 (47%), Gaps = 14/319 (4%)
Query: 9 FDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSA 68
+LA V++F ++ + + + ++ R+ VAV R +
Sbjct: 1 MTTLQLAFLGLIFVAVFGVVM-LALRLFAANPVQDRL-DVAVGRSTPIA---------ND 49
Query: 69 SSRLRTRDSKSLRNFVKKLNLKA-ILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIF 127
L + KL+L + + + AGFR + I + +
Sbjct: 50 EPNPWVARIIKLSGPLAKLSLPSDGWEMSALRTRFMNAGFRQPSAPAIYFAAKTTLAAGL 109
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
++ + +Y + ++ G+ P+V + NL+ +RQ I ++PDAL
Sbjct: 110 PLMA--FFILSTGGAKYGTNTLLFWLLSAAAFGYYLPNVLLKNLISRRQREIFESFPDAL 167
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQ 247
DL+ +CVE+G+++D AL RVA +IG +S LSEE+ L EL +++ A N RT
Sbjct: 168 DLMTVCVEAGLAMDAALARVASEIGLKSAVLSEELQLVTLELRAGSSKEKALRNLALRTG 227
Query: 248 MDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFL 307
+D V LIQS+R+GTSI DSLRV + R++R AE++AA + KL P+I F
Sbjct: 228 VDDVDALVAMLIQSERFGTSIADSLRVQSDQLRTKRRQRAEEQAAKIALKLLFPLIFFIF 287
Query: 308 PVLILVIIGPAILSIIDTM 326
P L++V++GPA + I +
Sbjct: 288 PSLLVVLMGPAFIQIYRVL 306
>gi|84387237|ref|ZP_00990258.1| Flp pilus assembly protein TadC [Vibrio splendidus 12B01]
gi|84377884|gb|EAP94746.1| Flp pilus assembly protein TadC [Vibrio splendidus 12B01]
Length = 323
Score = 215 bits (548), Expect = 8e-54, Method: Composition-based stats.
Identities = 66/275 (24%), Positives = 126/275 (45%), Gaps = 5/275 (1%)
Query: 52 REILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEY 111
R L K+ + + + R S +L + ++ +E KL AGF +
Sbjct: 47 RSPLDKKLRQISEDGAPTGRKPYDFSNTLESLSPFISKGNKKDNETYSEKLMHAGFHEKS 106
Query: 112 SLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNL 171
SL++ ++++ +I ++ + + + ++ ++G P++ +S L
Sbjct: 107 SLSVFYALKVLSSLIGIVAAFMVYY-----IALGGDYNNLLIMTCVFLGTFTPNIILSKL 161
Query: 172 VQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSF 231
++RQ I+ PDALDLL++C ESG+ + AL RVA ++ ++E+ A++
Sbjct: 162 QKERQKKIRNGVPDALDLLVVCTESGLGFNAALGRVASELYVSQPEFADELETVFAKIQA 221
Query: 232 LPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKA 291
A RT + + L + R G S+ +LR + R +R AE+ A
Sbjct: 222 GVTMPDALRQLIERTGLVELEGLVSLLSHASRMGGSLAQTLRDYTEDFRDKRQQAAEEIA 281
Query: 292 ASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
A + K+ PM+IF P +V +GP +L ++D +
Sbjct: 282 AKIPTKMLFPMLIFIWPCFFIVALGPGLLIVMDAL 316
>gi|78186665|ref|YP_374708.1| TadC protein [Chlorobium luteolum DSM 273]
gi|78166567|gb|ABB23665.1| TadC protein [Chlorobium luteolum DSM 273]
Length = 315
Score = 214 bits (546), Expect = 1e-53, Method: Composition-based stats.
Identities = 70/311 (22%), Positives = 152/311 (48%), Gaps = 12/311 (3%)
Query: 20 TAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKS 79
+ ++ S++ A+ ++KR+ S+ E + + R
Sbjct: 13 SGAAVASVVLAIYNW-GAGNAIKKRLISILHESRLPDEGARPKSAA--------ARKITP 63
Query: 80 LRNFVKKLN-LKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGY 138
+ + + KL+ + + AG RS + ++ ++ ++ +L ++++
Sbjct: 64 VIDVLSKLSIPEKGWQSSGVQLLFLQAGIRSINAPRYYFALKTLLSVVLPVLLGLFLYV- 122
Query: 139 DKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGI 198
+ P + V+ G+ P + + + +KR ++ + PD +DL++IC ESG+
Sbjct: 123 -RAPGVPPTRTMIFVVCTAAAGYYLPEMLLGFITRKRIGRLRDSLPDMIDLMVICTESGM 181
Query: 199 SIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQAL 258
ID A+ R+++++ G + L++E L+ E+ R A N R++++ + + L
Sbjct: 182 GIDAAITRISKEMAGTNPDLAQEFYLSALEIRAGATRIEALRNLALRSRLEDLDDLVSVL 241
Query: 259 IQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPA 318
Q+DR+GTS+ +SLRV RS R AE+ AA + K+ +P+I+F P L++V++GPA
Sbjct: 242 AQADRFGTSLAESLRVQSDMMRSRRTQRAEELAAKIPVKMLLPLILFIFPTLMMVLLGPA 301
Query: 319 ILSIIDTMKDH 329
++ ++ + +
Sbjct: 302 VIQVMHALSNK 312
>gi|153834029|ref|ZP_01986696.1| Flp pilus assembly protein TadC [Vibrio harveyi HY01]
gi|148869584|gb|EDL68574.1| Flp pilus assembly protein TadC [Vibrio harveyi HY01]
Length = 315
Score = 214 bits (545), Expect = 2e-53, Method: Composition-based stats.
Identities = 71/322 (22%), Positives = 138/322 (42%), Gaps = 27/322 (8%)
Query: 7 DLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKD 66
L A L + +++ S++ V P K+++ L D
Sbjct: 19 TLLFALILITTVLVVMTVGSVVMGVNSPI---------------------KRKLAELSGD 57
Query: 67 SASSR-LRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPI 125
+ + + +L + + + + NKL AGF SL++ ++ + I
Sbjct: 58 KKEALPTNNKMTDTLESLAPLTSPTSEKERQTTRNKLMHAGFHQSNSLSMFYAIKSITTI 117
Query: 126 IFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPD 185
I +++ + + + + L +G P + + +V KRQ +I+ PD
Sbjct: 118 IGVMMATLIYLTIPE-----SKYLYTYMALAALIGLITPDMILRRMVNKRQKAIRAGIPD 172
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
LDLL++C ESG+ + ALRRVA+++ L++E+ ++ A R
Sbjct: 173 MLDLLVVCTESGLGFNAALRRVADELVISHPELADEIDTVCNKIQAGKPMPEALRELVVR 232
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
T ++ + L + R G S+ +SLR + R +R AE+ AA + K+ PM++F
Sbjct: 233 TGLEEIMGLVSMLSHASRIGGSLVNSLREYTEDYRDKRQQAAEEVAAKIPVKMMFPMVLF 292
Query: 306 FLPVLILVIIGPAILSIIDTMK 327
P +V +GPA++++ +
Sbjct: 293 IWPCFFIVAVGPALITLAEAFS 314
>gi|323491540|ref|ZP_08096719.1| Flp pilus assembly protein TadC [Vibrio brasiliensis LMG 20546]
gi|323314116|gb|EGA67201.1| Flp pilus assembly protein TadC [Vibrio brasiliensis LMG 20546]
Length = 313
Score = 213 bits (544), Expect = 2e-53, Method: Composition-based stats.
Identities = 79/325 (24%), Positives = 150/325 (46%), Gaps = 21/325 (6%)
Query: 5 FFDLFDATELAVAI-TTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSL 63
FF F+ E V + ++ +I+ + + +GS + K +++ L
Sbjct: 7 FFASFNLDEQTVFLGLILLATVLIIFTLSLLLVGS--------------KSPIKAKLSQL 52
Query: 64 QKDSASSRLRTRD-SKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLV 122
+ + + + +T+ +L + + E+I KL AG+ +L + ++ +
Sbjct: 53 KSANGTEKHKTKRLENTLESLAPAMQPSNSKESESIREKLMHAGYLDANALTVFYALKGM 112
Query: 123 VPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRA 182
+I L++ + F +R A+++ VG P+V + +V KRQS I+
Sbjct: 113 STVIGLLMAAGFFFFAPD-----MSMRNLAMVVSVAVGLYGPNVVLGFMVDKRQSKIRGG 167
Query: 183 WPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENF 242
PDALDLL++C ESG+ + ALRRVA+++ ++E+ +++ AF +
Sbjct: 168 IPDALDLLVVCTESGLGFNAALRRVADELTISHPEFADELDTVCVKVNAGVEMSDAFNDL 227
Query: 243 YNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPM 302
RT + + L + + G S+ +LR + R +R E E+ AA + K+ P+
Sbjct: 228 IQRTGLKEIAGLVTMLAHASKIGGSLSQTLREYTEDYRDKRNQEIEEVAAKIPTKMIFPL 287
Query: 303 IIFFLPVLILVIIGPAILSIIDTMK 327
+IF P +V IGP++L TM
Sbjct: 288 LIFIWPCFFIVAIGPSMLLFTATMG 312
>gi|167579124|ref|ZP_02371998.1| type II secretion system protein [Burkholderia thailandensis TXDOH]
Length = 319
Score = 213 bits (544), Expect = 2e-53, Method: Composition-based stats.
Identities = 89/312 (28%), Positives = 162/312 (51%), Gaps = 7/312 (2%)
Query: 16 VAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTR 75
+ I + +F+++ A V+ + L + +A E + + A +
Sbjct: 7 MHILLLLGLFAIVVASVMATW----LAFAPRGLARRLEQIGGAGAVAAGDSPAPPAVWVE 62
Query: 76 DSKSLRNFVKKLNL-KAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIW 134
+ + KL+L K+ + + +L AG+RS + ++ + V+ + + +
Sbjct: 63 KLAEISQPISKLSLPKSGWENSPLRLRLINAGWRSPSAAHLYFAAKTVLALALPAAAMPF 122
Query: 135 IFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICV 194
+FG + + P+ + ++LIG GF P+ ++ + RQ I +PDALDLL +CV
Sbjct: 123 LFG-TAIADSPYSVS-AMLVLIGAFGFYLPNAMLARRIASRQRMIIEDFPDALDLLTVCV 180
Query: 195 ESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNA 254
E+G+ +D AL +VA+++ +S +++E+ L + E+ ++ A N RT + V
Sbjct: 181 EAGLGLDAALTKVADELRLRSPVVADELGLMLLEMRSGFTKEAALRNLALRTGAEDVDAF 240
Query: 255 TQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVI 314
+ LIQ+DR+GTSIG SLRVL R++R M AE++AA + KL P+I P L+ V+
Sbjct: 241 SAMLIQADRFGTSIGASLRVLSDTLRTQRRMRAEERAAKIALKLLFPLIFCIFPALLTVL 300
Query: 315 IGPAILSIIDTM 326
+GPA + I T+
Sbjct: 301 LGPAFIHIYRTL 312
>gi|269960464|ref|ZP_06174836.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
gi|269834541|gb|EEZ88628.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
Length = 314
Score = 213 bits (543), Expect = 3e-53, Method: Composition-based stats.
Identities = 70/272 (25%), Positives = 127/272 (46%), Gaps = 6/272 (2%)
Query: 57 KQQITSLQKDSASS-RLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNI 115
K+++ L D ++ + +L + + + + NKL AGF SL++
Sbjct: 48 KRKLAELSGDKREKVSANSKVADTLESLAPLTSPTSEKERQTTRNKLMHAGFHQSNSLSM 107
Query: 116 LLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKR 175
++ V II +++ + + + + L +VG P + ++ KR
Sbjct: 108 FYAIKSVTTIIGVMIATLVYLTIPE-----SKYLYTFMALAVFVGLVLPDFILRRMIDKR 162
Query: 176 QSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNR 235
Q +I+ PD LDLL++C ESG+ + ALRRVA+++ L++E+ ++
Sbjct: 163 QRAIRAGVPDMLDLLVVCTESGLGFNAALRRVADELVISHPELADEVDTVCNKIQAGKPM 222
Query: 236 QVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLG 295
A RT +D + L + R G S+ +SLR + R +R AE+ AA +
Sbjct: 223 PEALRELVYRTGLDELMGLVSMLSHASRIGGSLVNSLREYTEDYRDKRQQAAEEMAAKIP 282
Query: 296 PKLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
K+ PM++F P +V IGPA++S+ + K
Sbjct: 283 VKMMFPMVLFIWPCFFIVAIGPALISLAEAFK 314
>gi|225872758|ref|YP_002754215.1| type II secretion system protein [Acidobacterium capsulatum ATCC
51196]
gi|225793390|gb|ACO33480.1| type II secretion system protein [Acidobacterium capsulatum ATCC
51196]
Length = 299
Score = 213 bits (543), Expect = 3e-53, Method: Composition-based stats.
Identities = 69/235 (29%), Positives = 127/235 (54%), Gaps = 11/235 (4%)
Query: 92 ILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVG 151
++ ++ + ++ AAG R + + L RL+ P++ +++G + P +
Sbjct: 71 MVENQKLRDRFMAAGMRKPEHMELYLGARLLAPLLGVLIGTFF----------PSNTFLW 120
Query: 152 AVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDI 211
AV L G G+ P W+ V+ R+ I R+ PDA+DLL+ICV++G+ +DQA+ RV +++
Sbjct: 121 AVALAG-AGYLGPDFWLERKVKGRRHRISRSMPDAIDLLVICVDAGLGLDQAMLRVGQEL 179
Query: 212 GGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDS 271
++EE L E R A++ F RT++ ++N L+Q++R+GT I +
Sbjct: 180 AVSHPEINEEFLQINREQRAGRPRVDAWKGFAERTRLPEIQNFVSMLVQTERFGTPITRA 239
Query: 272 LRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
L R +R AE+KAA K+ P+++F P + +V++GPA ++I +
Sbjct: 240 LNTFSDSMRLKRKQIAEEKAAKTTVKMLFPLVLFIFPCIFIVLLGPAFITISKGL 294
>gi|303248308|ref|ZP_07334570.1| Type II secretion system F domain protein [Desulfovibrio
fructosovorans JJ]
gi|302490333|gb|EFL50245.1| Type II secretion system F domain protein [Desulfovibrio
fructosovorans JJ]
Length = 314
Score = 212 bits (540), Expect = 6e-53, Method: Composition-based stats.
Identities = 88/315 (27%), Positives = 152/315 (48%), Gaps = 7/315 (2%)
Query: 14 LAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLR 73
+ +++ + S+ +YAV++ E EKR + +L ++ L
Sbjct: 4 ILISLLVSASVGFFVYAVMVL---RDEREKRREIAERAMAVLHPAGPEGGRRPGVIGWLA 60
Query: 74 TRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGII 133
F + + K L AGFR ++ I +++ ++ L++G+
Sbjct: 61 GLGRGLAARFGEAVKPKEAEELSKTRTTLIHAGFRQPGAVEIYWGLKVGAALVGLLVGVF 120
Query: 134 WIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLIC 193
P Q ++ A + GF P V + + V+KRQ +I PDALDLL++C
Sbjct: 121 LA----ASGRIPAQYKMFAALACVAGGFYLPGVVLDSRVKKRQKAILHGLPDALDLLVVC 176
Query: 194 VESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRN 253
VE+G+ +D A+ RV ++ + LS E+ L EL +R+ A +N NR ++ + +
Sbjct: 177 VEAGMGLDAAIYRVCLEMTHKEPILSSELRLLTLELRAGKSRREALKNLSNRVGLEDMGS 236
Query: 254 ATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILV 313
LIQ+D +GTSI +LRV R++R AE+ AA L KL P+++F P L++V
Sbjct: 237 LVAMLIQTDMFGTSIAQTLRVYADSMRTKRFQLAEELAAKLPVKLLFPLVLFIFPTLLIV 296
Query: 314 IIGPAILSIIDTMKD 328
I+GPA +S++
Sbjct: 297 ILGPAGISLMRMFSS 311
>gi|167617239|ref|ZP_02385870.1| type II secretion system protein [Burkholderia thailandensis Bt4]
gi|257141112|ref|ZP_05589374.1| type II secretion system protein [Burkholderia thailandensis E264]
Length = 319
Score = 212 bits (539), Expect = 8e-53, Method: Composition-based stats.
Identities = 88/312 (28%), Positives = 161/312 (51%), Gaps = 7/312 (2%)
Query: 16 VAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTR 75
+ I + +F+++ A V+ + L + +A E + + A +
Sbjct: 7 MHILLLLGLFAIVVASVMATW----LAFAPRGLARRLEQIGGAGAVAAGDSPAPPAVWVE 62
Query: 76 DSKSLRNFVKKLNL-KAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIW 134
+ + KL+L K+ + + +L AG+RS + ++ + V+ + + +
Sbjct: 63 KLAEISQPISKLSLPKSGWENSPLRLRLINAGWRSPSAAHLYFAAKTVLALALPAAAMPF 122
Query: 135 IFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICV 194
+ G + + P+ + ++LIG GF P+ ++ + RQ I +PDALDLL +CV
Sbjct: 123 LIG-TAIADSPYSVS-AMLVLIGAFGFYLPNAMLARRIASRQRMIIEDFPDALDLLTVCV 180
Query: 195 ESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNA 254
E+G+ +D AL +VA+++ +S +++E+ L + E+ ++ A N RT + V
Sbjct: 181 EAGLGLDAALTKVADELRLRSPVVADELGLMLLEMRSGFTKEAALRNLALRTGAEDVDAF 240
Query: 255 TQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVI 314
+ LIQ+DR+GTSIG SLRVL R++R M AE++AA + KL P+I P L+ V+
Sbjct: 241 SAMLIQADRFGTSIGASLRVLSDTLRTQRRMRAEERAAKIALKLLFPLIFCIFPALLTVL 300
Query: 315 IGPAILSIIDTM 326
+GPA + I T+
Sbjct: 301 LGPAFIHIYRTL 312
>gi|118581108|ref|YP_902358.1| type II secretion system protein [Pelobacter propionicus DSM 2379]
gi|118503818|gb|ABL00301.1| type II secretion system protein [Pelobacter propionicus DSM 2379]
Length = 302
Score = 211 bits (538), Expect = 1e-52, Method: Composition-based stats.
Identities = 91/315 (28%), Positives = 148/315 (46%), Gaps = 16/315 (5%)
Query: 14 LAVAITTAVSIFSLI-YAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRL 72
+ + +S+ ++ A+ GEL++R++ + E KQ T+ +D R+
Sbjct: 3 IVITGFIFLSVAMVVSLALYPLLTKKGELQERLEKMMPE-----KQASTTFSEDKPWWRI 57
Query: 73 RTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGI 132
D + K L AAGFR + SL + L +L + +I + I
Sbjct: 58 TIEDLGAKLPVAAK-------EQTKYTRMLVAAGFR-KESLYLFLGSKLALALILPGIYI 109
Query: 133 IWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLI 192
+L P L + I GF PS W+ V R++ I PD LDLL +
Sbjct: 110 FTYALPKGVLMEPEPLLYTTGLAIA--GFLLPSGWLMYKVNNRKTEIFHTLPDILDLLTV 167
Query: 193 CVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVR 252
VE+G+ ID AL R E + PL+EE+ + E+ R A + RT ++ VR
Sbjct: 168 SVEAGLGIDAALNRACESPQFKGNPLAEELKIAAREIRAGKPRGDALRDMAERTDVEDVR 227
Query: 253 NATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLIL 312
L+Q++R+GTS+ +LRV R++R AE++AA K+ P+I+F P L++
Sbjct: 228 AFVTMLVQTERFGTSLSLALRVHSDSLRTKRRQIAEERAAKTAIKILFPLILFIFPALMI 287
Query: 313 VIIGPAILSIIDTMK 327
++IGPA ++D K
Sbjct: 288 ILIGPAFFKLMDIFK 302
>gi|218887822|ref|YP_002437143.1| type II secretion system protein [Desulfovibrio vulgaris str.
'Miyazaki F']
gi|218758776|gb|ACL09675.1| type II secretion system protein [Desulfovibrio vulgaris str.
'Miyazaki F']
Length = 326
Score = 211 bits (538), Expect = 1e-52, Method: Composition-based stats.
Identities = 81/316 (25%), Positives = 146/316 (46%), Gaps = 5/316 (1%)
Query: 13 ELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQK--DSASS 70
A+ + ++ + A+ G+ + +RM + + +S S
Sbjct: 9 PFLAALLASGAVLLVAQAL-RGMFGNRQRVQRMHGRLTRHAAGARAVAVAAPALPESPLS 67
Query: 71 RLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLIL 130
L+ + +++ L AG+R+ + + V+ + + L+L
Sbjct: 68 SLKAALNAVAERVGQRVVKDDGEEVNEAGLALVRAGYRNRRAPLVFWGVKAGLTLCGLLL 127
Query: 131 GIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLL 190
G++ + P + I VG AP+VW+S ++ R+ I + PDALDLL
Sbjct: 128 GLVVRLLAGN--DIPLGMVALLFICPAVVGLYAPNVWLSRRIKARRLDIINSLPDALDLL 185
Query: 191 LICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDC 250
++CVE+G+ +DQA RVA ++ + L+EE+ L I EL +R A +N R ++
Sbjct: 186 VVCVEAGMGLDQAFSRVAREMAATNPVLAEELNLVILELRAGKSRAEALKNLAARVALED 245
Query: 251 VRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVL 310
V + ++Q+D +GTSI +LRV R+ R AE+ AA + KL P++ LP L
Sbjct: 246 VNSLVTLIVQADAFGTSISSTLRVYSDTMRTTRFQRAEEIAAKMPVKLLFPLVFCILPAL 305
Query: 311 ILVIIGPAILSIIDTM 326
+ I+GPA + ++
Sbjct: 306 FVTIMGPAFIKLMQVF 321
>gi|207728101|ref|YP_002256495.1| pilus assembly protein tadc [Ralstonia solanacearum MolK2]
gi|206591346|emb|CAQ56958.1| pilus assembly protein tadc [Ralstonia solanacearum MolK2]
Length = 314
Score = 211 bits (537), Expect = 1e-52, Method: Composition-based stats.
Identities = 82/309 (26%), Positives = 156/309 (50%), Gaps = 11/309 (3%)
Query: 20 TAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKS 79
T + IF + A + L L++R+ + ++ +Q+++ S LR + +
Sbjct: 12 TFIIIFGAVLAALT-ILRPSALQRRLGQID-------REAPGRVQQETPSDWLR-KIGQI 62
Query: 80 LRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYD 139
+ K K + ++ + AG+R+ ++ I V+ ++ +L + + G
Sbjct: 63 AKPLAKASLPKDGWENSDLRARFVHAGWRAPEAIAIYFGVKTLLAAGLPLLLSLALLGRF 122
Query: 140 KLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGIS 199
L V ++ +GF P+V + +++RQ I A+PD+LDL+++CVE+G+
Sbjct: 123 DASHQTEYLTV--LLGAALIGFYLPNVLLRLKIRRRQRDIFEAFPDSLDLIMVCVEAGLG 180
Query: 200 IDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALI 259
+D A+ RV E++ ++EE + EL R+ A N RT ++ V LI
Sbjct: 181 LDAAVLRVVEEMRTARPAMAEEYEILTLELRAGLAREKALRNLAARTGVEDVSMLVAMLI 240
Query: 260 QSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAI 319
Q+DR+GTS+ +SLRV R++R M AE++AA + K+ P+I P L +V++GPA
Sbjct: 241 QADRFGTSVAESLRVHSDMLRTKRHMLAEERAAKISTKILFPLIFCIFPSLFVVLLGPAA 300
Query: 320 LSIIDTMKD 328
+ ++ ++
Sbjct: 301 IQVVGALRS 309
>gi|300692336|ref|YP_003753331.1| Tad secretion system, secretion accessory protein [Ralstonia
solanacearum PSI07]
gi|299079396|emb|CBJ52067.1| Tad secretion system, secretion accessory protein [Ralstonia
solanacearum PSI07]
Length = 313
Score = 211 bits (537), Expect = 1e-52, Method: Composition-based stats.
Identities = 74/304 (24%), Positives = 150/304 (49%), Gaps = 11/304 (3%)
Query: 24 IFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNF 83
F I A+++ + L++R+ + E LR + + +
Sbjct: 16 AFCAILAILV-VMRPHTLQRRLGQIDRETPQLRPKIEE--------HDWLHTAERIAKPL 66
Query: 84 VKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLE 143
+ K D ++ + AG+R+ ++ I V+ ++ +L ++ +
Sbjct: 67 ARASVPKEGWEDSSLHTRFVHAGWRAPEAIPIYFGVKTILAFGLPVL--LFPLALGQFDA 124
Query: 144 YPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQA 203
+ + + +GF P++ ++ ++ RQ + ++PD+LDL+++CVE+G+ +D A
Sbjct: 125 SQRLQFLTVLFVAAAIGFYLPNLVLAWKIKYRQRDVFESFPDSLDLIMVCVEAGLGLDAA 184
Query: 204 LRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDR 263
+ RV +++ +++E L EL +R+ A +F RT +D V LIQ+DR
Sbjct: 185 ILRVVDEMRAARPVMAQEYELLTLELRAGLSREKALRHFAARTGVDDVSLLVAMLIQADR 244
Query: 264 YGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSII 323
+GTSI SLRV R++R M AE++AA +G K+ P+I P + +V++G A++ I+
Sbjct: 245 FGTSIAASLRVHSDMLRTKRQMLAEERAAKIGTKILFPLIFCIFPSIYVVLLGSALIQIV 304
Query: 324 DTMK 327
+ ++
Sbjct: 305 EALR 308
>gi|56477520|ref|YP_159109.1| type II secretion system protein [Aromatoleum aromaticum EbN1]
gi|56313563|emb|CAI08208.1| Bacterial type II secretion system protein, probably involved in
Flp pilus synthesis [Aromatoleum aromaticum EbN1]
Length = 315
Score = 210 bits (536), Expect = 2e-52, Method: Composition-based stats.
Identities = 79/318 (24%), Positives = 146/318 (45%), Gaps = 13/318 (4%)
Query: 9 FDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSA 68
D T++ V++ + + V+ R++++ + + +++
Sbjct: 1 MDYTQIGFLGLLFVAVTAGAF-FVMSLFSRSAAADRLQALGGGKSTVGAGADAWIERTVK 59
Query: 69 SSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFL 128
++ F K + + + AG R + V+ V+ +
Sbjct: 60 LTK----------PFAKLSTPEDSEDMSALRARFMHAGIRHAAAPLAFFGVKTVLALGLP 109
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
+L + FQ + V+L +G+ P++ ++ L+ RQ I +PDALD
Sbjct: 110 LLA--YSTVLVSTPSLQFQGTLLVVLLAAAIGYYVPNIILNRLIFVRQREIFETFPDALD 167
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
L+ +CVE+G+ ++ AL RVA+++ +S L+EE+ L EL R A N RT +
Sbjct: 168 LMTVCVEAGLGVEAALVRVADEMQHKSEALAEELHLVTLELRAGLERARALRNLAARTGV 227
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP 308
+ V +IQ++R+GTSI SLR+ R+ R AE+ AA + KL P+I F P
Sbjct: 228 EEVEGFVAMVIQAERFGTSIATSLRIHSDMLRTRRRQRAEEAAAKIALKLLFPLIFFIFP 287
Query: 309 VLILVIIGPAILSIIDTM 326
L+LV++GPA++ + +
Sbjct: 288 SLMLVLLGPAMIQVYRIL 305
>gi|283852078|ref|ZP_06369352.1| type II secretion system protein [Desulfovibrio sp. FW1012B]
gi|283572468|gb|EFC20454.1| type II secretion system protein [Desulfovibrio sp. FW1012B]
Length = 317
Score = 210 bits (535), Expect = 2e-52, Method: Composition-based stats.
Identities = 77/247 (31%), Positives = 128/247 (51%), Gaps = 4/247 (1%)
Query: 82 NFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKL 141
F + + K L AGFR ++ I ++ ++ L++G +
Sbjct: 72 RFGEAVKPKEAKELSKTRANLVHAGFRQPGAVEIYWGIKAGAGLVGLVVGALLALS---- 127
Query: 142 LEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISID 201
P Q ++ + GF P + + V+KRQ +I+R PDALDLL++CVE+G+ +D
Sbjct: 128 GRLPGQYKMFVALACVAGGFYLPGLLLDARVKKRQKAIQRGLPDALDLLVVCVEAGMGLD 187
Query: 202 QALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQS 261
A+ RV ++ + LS E+ L EL +R+ A +N +R ++ + + LIQ+
Sbjct: 188 AAIYRVCVEMASKEPVLSSELRLLTLELRAGKSRREALKNLSSRIGLEDMGSLVAMLIQT 247
Query: 262 DRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILS 321
D +GTSI +LRV R++R AE+ AA L KL P+I F P L++VI+GPA++S
Sbjct: 248 DMFGTSIAQTLRVYADSMRTKRFQLAEELAAKLPVKLLFPLIFFIFPTLLIVILGPAVIS 307
Query: 322 IIDTMKD 328
++
Sbjct: 308 LMKMFGG 314
>gi|53723215|ref|YP_112200.1| hypothetical protein BPSS2198 [Burkholderia pseudomallei K96243]
gi|76819357|ref|YP_336475.1| type II secretion system protein [Burkholderia pseudomallei 1710b]
gi|126455503|ref|YP_001076997.1| type II secretion system protein [Burkholderia pseudomallei 1106a]
gi|167744183|ref|ZP_02416957.1| type II secretion system protein [Burkholderia pseudomallei 14]
gi|167821382|ref|ZP_02453062.1| type II secretion system protein [Burkholderia pseudomallei 91]
gi|167829724|ref|ZP_02461195.1| type II secretion system protein [Burkholderia pseudomallei 9]
gi|167851191|ref|ZP_02476699.1| type II secretion system protein [Burkholderia pseudomallei B7210]
gi|167899821|ref|ZP_02487222.1| type II secretion system protein [Burkholderia pseudomallei 7894]
gi|167916485|ref|ZP_02503576.1| type II secretion system protein [Burkholderia pseudomallei 112]
gi|167924342|ref|ZP_02511433.1| type II secretion system protein [Burkholderia pseudomallei BCC215]
gi|217424204|ref|ZP_03455703.1| type II secretion system protein [Burkholderia pseudomallei 576]
gi|226194113|ref|ZP_03789713.1| type II secretion system protein [Burkholderia pseudomallei
Pakistan 9]
gi|237510430|ref|ZP_04523145.1| type II secretion system protein [Burkholderia pseudomallei
MSHR346]
gi|254182575|ref|ZP_04889169.1| type II secretion system protein [Burkholderia pseudomallei 1655]
gi|254187127|ref|ZP_04893642.1| type II secretion system protein [Burkholderia pseudomallei Pasteur
52237]
gi|254192523|ref|ZP_04898962.1| type II secretion system protein [Burkholderia pseudomallei S13]
gi|254296491|ref|ZP_04963947.1| type II secretion system protein [Burkholderia pseudomallei 406e]
gi|52213629|emb|CAH39683.1| putative membrane protein [Burkholderia pseudomallei K96243]
gi|76583830|gb|ABA53304.1| Bacterial type II secretion system protein, probably involved in
Flp pilus synthesis [Burkholderia pseudomallei 1710b]
gi|126229271|gb|ABN92684.1| type II secretion system protein [Burkholderia pseudomallei 1106a]
gi|157806389|gb|EDO83559.1| type II secretion system protein [Burkholderia pseudomallei 406e]
gi|157934810|gb|EDO90480.1| type II secretion system protein [Burkholderia pseudomallei Pasteur
52237]
gi|169649281|gb|EDS81974.1| type II secretion system protein [Burkholderia pseudomallei S13]
gi|184213110|gb|EDU10153.1| type II secretion system protein [Burkholderia pseudomallei 1655]
gi|217392669|gb|EEC32692.1| type II secretion system protein [Burkholderia pseudomallei 576]
gi|225933806|gb|EEH29793.1| type II secretion system protein [Burkholderia pseudomallei
Pakistan 9]
gi|235002635|gb|EEP52059.1| type II secretion system protein [Burkholderia pseudomallei
MSHR346]
Length = 319
Score = 210 bits (534), Expect = 3e-52, Method: Composition-based stats.
Identities = 88/312 (28%), Positives = 160/312 (51%), Gaps = 7/312 (2%)
Query: 16 VAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTR 75
+ I + +F+++ A V+ + L + +A E + + A +
Sbjct: 7 MHILLLLGLFAIVVAGVMATW----LAFAPRGLARRLEQIGGAGAVAAGDGRAPPAVWIE 62
Query: 76 DSKSLRNFVKKLNL-KAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIW 134
+ + KL+L K+ + + +L AG+RS + ++ + V+ + +
Sbjct: 63 KLAEISQPISKLSLPKSGWENSPLRLRLINAGWRSPGAAHLYFAAKTVLALALPAAAMPL 122
Query: 135 IFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICV 194
+ G + + P+ + ++LIG GF P+ ++ + RQ I +PDALDLL +CV
Sbjct: 123 LIG-TAIADSPYSVS-AMLVLIGAFGFYLPNAMLARRIAARQRMIVEDFPDALDLLTVCV 180
Query: 195 ESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNA 254
E+G+ +D AL +VA+++ +S +++E+ L + E+ ++ A N RT + V
Sbjct: 181 EAGLGLDAALTKVADELRLRSPVVADELGLMLLEMRSGFTKETALRNLALRTGAEDVDAF 240
Query: 255 TQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVI 314
+ LIQ+DR+GTSIG SLRVL R++R M AE++AA + KL P+I P L+ V+
Sbjct: 241 STMLIQADRFGTSIGASLRVLSDTLRTQRRMRAEERAAKIALKLLFPLIFCIFPALLTVL 300
Query: 315 IGPAILSIIDTM 326
+GPA + I T+
Sbjct: 301 LGPAFIHIYRTL 312
>gi|242311994|ref|ZP_04811011.1| type II secretion system protein [Burkholderia pseudomallei 1106b]
gi|254265316|ref|ZP_04956181.1| type II secretion system protein [Burkholderia pseudomallei 1710a]
gi|242135233|gb|EES21636.1| type II secretion system protein [Burkholderia pseudomallei 1106b]
gi|254216318|gb|EET05703.1| type II secretion system protein [Burkholderia pseudomallei 1710a]
Length = 313
Score = 209 bits (533), Expect = 4e-52, Method: Composition-based stats.
Identities = 88/312 (28%), Positives = 160/312 (51%), Gaps = 7/312 (2%)
Query: 16 VAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTR 75
+ I + +F+++ A V+ + L + +A E + + A +
Sbjct: 1 MHILLLLGLFAIVVAGVMATW----LAFAPRGLARRLEQIGGAGAVAAGDGRAPPAVWIE 56
Query: 76 DSKSLRNFVKKLNL-KAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIW 134
+ + KL+L K+ + + +L AG+RS + ++ + V+ + +
Sbjct: 57 KLAEISQPISKLSLPKSGWENSPLRLRLINAGWRSPGAAHLYFAAKTVLALALPAAAMPL 116
Query: 135 IFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICV 194
+ G + + P+ + ++LIG GF P+ ++ + RQ I +PDALDLL +CV
Sbjct: 117 LIG-TAIADSPYSVS-AMLVLIGAFGFYLPNAMLARRIAARQRMIVEDFPDALDLLTVCV 174
Query: 195 ESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNA 254
E+G+ +D AL +VA+++ +S +++E+ L + E+ ++ A N RT + V
Sbjct: 175 EAGLGLDAALTKVADELRLRSPVVADELGLMLLEMRSGFTKETALRNLALRTGAEDVDAF 234
Query: 255 TQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVI 314
+ LIQ+DR+GTSIG SLRVL R++R M AE++AA + KL P+I P L+ V+
Sbjct: 235 STMLIQADRFGTSIGASLRVLSDTLRTQRRMRAEERAAKIALKLLFPLIFCIFPALLTVL 294
Query: 315 IGPAILSIIDTM 326
+GPA + I T+
Sbjct: 295 LGPAFIHIYRTL 306
>gi|167725257|ref|ZP_02408493.1| type II secretion system protein [Burkholderia pseudomallei DM98]
Length = 275
Score = 209 bits (533), Expect = 4e-52, Method: Composition-based stats.
Identities = 77/238 (32%), Positives = 133/238 (55%), Gaps = 2/238 (0%)
Query: 89 LKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQL 148
K+ + + +L AG+RS + ++ + V+ + + + G + + P+ +
Sbjct: 33 PKSGWENSPLRLRLINAGWRSPGAAHLYFAAKTVLALALPAAAMPLLIG-TAIADSPYSV 91
Query: 149 RVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVA 208
++LIG GF P+ ++ + RQ I +PDALDLL +CVE+G+ +D AL +VA
Sbjct: 92 S-AMLVLIGAFGFYLPNAMLARRIAARQRMIVEDFPDALDLLTVCVEAGLGLDAALTKVA 150
Query: 209 EDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSI 268
+++ +S +++E+ L + E+ ++ A N RT + V + LIQ+DR+GTSI
Sbjct: 151 DELRLRSPVVADELGLMLLEMRSGFTKETALRNLALRTGAEDVDAFSTMLIQADRFGTSI 210
Query: 269 GDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
G SLRVL R++R M AE++AA + KL P+I P L+ V++GPA + I T+
Sbjct: 211 GASLRVLSDTLRTQRRMRAEERAAKIALKLLFPLIFCIFPALLTVLLGPAFIHIYRTL 268
>gi|83749633|ref|ZP_00946616.1| TRANSMEMBRANE TIGHT ADHERENCE TADC-RELATED PROTEIN; tadC1
[Ralstonia solanacearum UW551]
gi|207744163|ref|YP_002260555.1| pilus assembly protein tadc [Ralstonia solanacearum IPO1609]
gi|83723694|gb|EAP70889.1| TRANSMEMBRANE TIGHT ADHERENCE TADC-RELATED PROTEIN; tadC1
[Ralstonia solanacearum UW551]
gi|206595567|emb|CAQ62494.1| pilus assembly protein tadc [Ralstonia solanacearum IPO1609]
Length = 314
Score = 209 bits (532), Expect = 5e-52, Method: Composition-based stats.
Identities = 81/309 (26%), Positives = 153/309 (49%), Gaps = 11/309 (3%)
Query: 20 TAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKS 79
T + IF + A + L L++R+ + ++ +Q+++ LR + +
Sbjct: 12 TFIIIFGAVLAALT-ILRPSALQRRLGQID-------REAPGRVQEETPYDWLR-KIGQI 62
Query: 80 LRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYD 139
+ K K + + AG+R+ ++ I V+ ++ +L + + G
Sbjct: 63 AKPLAKASLPKDGWENSGLRAHFVHAGWRAPEAIAIYFGVKTLLAAGLPLLLSLALLGRF 122
Query: 140 KLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGIS 199
L V ++ +GF P+V + +++RQ I A+PD+LDL+++CVE+G+
Sbjct: 123 DASHQTEYLTV--LLGAALIGFYLPNVLLRLKIRRRQRDIFEAFPDSLDLIMVCVEAGLG 180
Query: 200 IDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALI 259
+D A+ RV E++ ++EE + EL R+ A N RT ++ V LI
Sbjct: 181 LDAAVLRVVEEMRTARPAMAEEYEILTLELRAGLAREKALRNLAARTGVEDVSMLVAMLI 240
Query: 260 QSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAI 319
Q+DR+GTS+ +SLRV R++R M AE++AA + K+ P+I P L +V++GPA
Sbjct: 241 QADRFGTSVAESLRVHSDMLRTKRHMLAEERAAKISTKILFPLIFCIFPSLFVVLLGPAA 300
Query: 320 LSIIDTMKD 328
+ ++ ++
Sbjct: 301 IQVVGALRS 309
>gi|83718164|ref|YP_440464.1| hypothetical protein BTH_II2276 [Burkholderia thailandensis E264]
gi|83651989|gb|ABC36053.1| membrane protein, putative [Burkholderia thailandensis E264]
Length = 296
Score = 209 bits (532), Expect = 6e-52, Method: Composition-based stats.
Identities = 83/282 (29%), Positives = 148/282 (52%), Gaps = 3/282 (1%)
Query: 46 KSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNL-KAILVDENIVNKLRA 104
+ +A E + + A + + + KL+L K+ + + +L
Sbjct: 10 RGLARRLEQIGGAGAVAAGDSPAPPAVWVEKLAEISQPISKLSLPKSGWENSPLRLRLIN 69
Query: 105 AGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAP 164
AG+RS + ++ + V+ + + ++ G + + P+ + ++LIG GF P
Sbjct: 70 AGWRSPSAAHLYFAAKTVLALALPAAAMPFLIG-TAIADSPYSVS-AMLVLIGAFGFYLP 127
Query: 165 SVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLL 224
+ ++ + RQ I +PDALDLL +CVE+G+ +D AL +VA+++ +S +++E+ L
Sbjct: 128 NAMLARRIASRQRMIIEDFPDALDLLTVCVEAGLGLDAALTKVADELRLRSPVVADELGL 187
Query: 225 TIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERL 284
+ E+ ++ A N RT + V + LIQ+DR+GTSIG SLRVL R++R
Sbjct: 188 MLLEMRSGFTKEAALRNLALRTGAEDVDAFSAMLIQADRFGTSIGASLRVLSDTLRTQRR 247
Query: 285 MEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
M AE++AA + KL P+I P L+ V++GPA + I T+
Sbjct: 248 MRAEERAAKIALKLLFPLIFCIFPALLTVLLGPAFIHIYRTL 289
>gi|54302281|ref|YP_132274.1| tight adherence TadC-like transmembrane protein [Photobacterium
profundum SS9]
gi|46915703|emb|CAG22474.1| hypothetical putative tight adherence TadC-related transmembrane
protein [Photobacterium profundum SS9]
Length = 322
Score = 209 bits (532), Expect = 6e-52, Method: Composition-based stats.
Identities = 78/316 (24%), Positives = 147/316 (46%), Gaps = 15/316 (4%)
Query: 14 LAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLR 73
+V F+L A++I +L L+KR+ S++ + K+ S D+
Sbjct: 22 FLGLAFISVVTFTLCLALLITNLL-NPLKKRLHSLSHISKDTTKKSAESSALDN------ 74
Query: 74 TRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGII 133
+L + K ++ ++ L AG+ + +L +++++ +IF G++
Sbjct: 75 -----TLESMDKYISPSSMKERNQTKTLLMHAGYEQKQALTNFYAIKIIL-VIFAFFGVL 128
Query: 134 WIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLIC 193
L E Q + +L + P+ + +KR ++ A+PDALDLL++
Sbjct: 129 --ISSKFLPELSTQKILFYTLLAMAIATFLPNFVLQKKAKKRIQTLSNAFPDALDLLVVT 186
Query: 194 VESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRN 253
E+G+ AL RVA +I S LS E+ + ++ +A F RT + ++
Sbjct: 187 TEAGLGFLAALNRVANEIDALSPELSSELQIVCRKVRLGVPLPIALSQFIERTGLLELQG 246
Query: 254 ATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILV 313
+ QS + G+S+GD+LR E R R+ +AE++AA +G K+ P++ P V
Sbjct: 247 LVSIISQSVKLGSSMGDTLREYAIEFRDRRMQKAEEEAAKIGTKMIFPLVTCIWPGFFTV 306
Query: 314 IIGPAILSIIDTMKDH 329
IGPAI+++++
Sbjct: 307 AIGPAIIAVLEAFGGK 322
>gi|126443620|ref|YP_001064084.1| type II secretion system protein [Burkholderia pseudomallei 668]
gi|167908138|ref|ZP_02495343.1| type II secretion system protein [Burkholderia pseudomallei NCTC
13177]
gi|126223111|gb|ABN86616.1| type II secretion system protein [Burkholderia pseudomallei 668]
Length = 319
Score = 208 bits (531), Expect = 7e-52, Method: Composition-based stats.
Identities = 88/312 (28%), Positives = 160/312 (51%), Gaps = 7/312 (2%)
Query: 16 VAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTR 75
+ I + +F+++ A V+ + L + +A E + + A +
Sbjct: 7 MHILLLLGLFAIVVAGVMATW----LAFAPRGLARRLEQIGGAGAVAAGDGRAPPAVWIE 62
Query: 76 DSKSLRNFVKKLNL-KAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIW 134
+ + KL+L K+ + + +L AG+RS + ++ + V+ + +
Sbjct: 63 KLAEISQPISKLSLPKSGWENSPLRLRLINAGWRSPGAAHLYFAAKTVLALALPAAAMPL 122
Query: 135 IFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICV 194
+ G + + P+ + ++LIG GF P+ ++ + RQ I +PDALDLL +CV
Sbjct: 123 LIG-TAIADSPYSVS-AMLVLIGAFGFYLPNAMLARRIAARQRMIVEDFPDALDLLTVCV 180
Query: 195 ESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNA 254
E+G+ +D AL +VA+++ +S +++E+ L + E+ ++ A N RT + V
Sbjct: 181 EAGLGLDAALTKVADELRLRSPVVADELGLMLLEMRSGFTKETALRNLALRTGAEDVDAF 240
Query: 255 TQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVI 314
+ LIQ+DR+GTSIG SLRVL R++R M AE++AA + KL P+I P L+ V+
Sbjct: 241 SAMLIQADRFGTSIGASLRVLSDTLRTQRRMRAEERAAKIALKLLFPLIFCIFPALLTVL 300
Query: 315 IGPAILSIIDTM 326
+GPA + I T+
Sbjct: 301 LGPAFIHIYRTL 312
>gi|134281772|ref|ZP_01768479.1| type II secretion system protein [Burkholderia pseudomallei 305]
gi|134246834|gb|EBA46921.1| type II secretion system protein [Burkholderia pseudomallei 305]
Length = 313
Score = 208 bits (530), Expect = 1e-51, Method: Composition-based stats.
Identities = 88/312 (28%), Positives = 160/312 (51%), Gaps = 7/312 (2%)
Query: 16 VAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTR 75
+ I + +F+++ A V+ + L + +A E + + A +
Sbjct: 1 MHILLLLGLFAIVVAGVMATW----LAFAPRGLARRLEQIGGAGAVAAGDGRAPPAVWIE 56
Query: 76 DSKSLRNFVKKLNL-KAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIW 134
+ + KL+L K+ + + +L AG+RS + ++ + V+ + +
Sbjct: 57 KLAEISQPISKLSLPKSGWENSPLRLRLINAGWRSPGAAHLYFAAKTVLALALPAAAMPL 116
Query: 135 IFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICV 194
+ G + + P+ + ++LIG GF P+ ++ + RQ I +PDALDLL +CV
Sbjct: 117 LIG-TAIADSPYSVS-AMLVLIGAFGFYLPNAMLARRIAARQRMIVEDFPDALDLLTVCV 174
Query: 195 ESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNA 254
E+G+ +D AL +VA+++ +S +++E+ L + E+ ++ A N RT + V
Sbjct: 175 EAGLGLDAALTKVADELRLRSPVVADELGLMLLEMRSGFTKETALRNLALRTGAEDVDAF 234
Query: 255 TQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVI 314
+ LIQ+DR+GTSIG SLRVL R++R M AE++AA + KL P+I P L+ V+
Sbjct: 235 SAMLIQADRFGTSIGASLRVLSDTLRTQRRMRAEERAAKIALKLLFPLIFCIFPALLTVL 294
Query: 315 IGPAILSIIDTM 326
+GPA + I T+
Sbjct: 295 LGPAFIHIYRTL 306
>gi|23016184|ref|ZP_00055943.1| COG2064: Flp pilus assembly protein TadC [Magnetospirillum
magnetotacticum MS-1]
Length = 319
Score = 207 bits (527), Expect = 2e-51, Method: Composition-based stats.
Identities = 114/294 (38%), Positives = 179/294 (60%), Gaps = 6/294 (2%)
Query: 38 SGELEKRMKSVAVEREILRKQQITSLQKDSASSRLR----TRDSKSLRNFVKKLNLKAIL 93
R+K+V+ R L ++Q L + S R R R +R + +L L+ ++
Sbjct: 28 RDRRAARIKAVSGRRRELSERQKADLDQARGSGRRRGAMPQRRVALMRAVIDRLKLQDLM 87
Query: 94 VDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAV 153
+ + KL AG+R + + + R+ +P++ L LG+I+ E P +R +
Sbjct: 88 EAKALKAKLAQAGWRGQAAPLTFIFARVALPVLLLALGLIYATTL--FDEQPLMIRAMIL 145
Query: 154 ILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGG 213
+ G P++W++N VQKRQ ++ RA+PDALDL++ICV++G+S++ AL RV E++
Sbjct: 146 AVAMGAGGLLPNIWLANAVQKRQLALGRAFPDALDLIVICVDAGLSVETALGRVTEEMMN 205
Query: 214 QSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLR 273
S ++EE+ LT AEL+FL +R+ A+ENF RT + V++ + ALIQS++YGT + +L+
Sbjct: 206 SSPEMAEEIGLTAAELAFLADRRQAWENFAGRTGLPQVKSLSTALIQSEKYGTPVAQALK 265
Query: 274 VLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
VL E R R+ AEKKAA+L KLTVPMI+FFLPVL L+I GPA L + +K
Sbjct: 266 VLSQENRESRMAAAEKKAAALPAKLTVPMIVFFLPVLFLMIAGPAALQVSGMLK 319
>gi|116748937|ref|YP_845624.1| type II secretion system protein [Syntrophobacter fumaroxidans
MPOB]
gi|116698001|gb|ABK17189.1| type II secretion system protein [Syntrophobacter fumaroxidans
MPOB]
Length = 319
Score = 207 bits (527), Expect = 2e-51, Method: Composition-based stats.
Identities = 82/313 (26%), Positives = 147/313 (46%), Gaps = 3/313 (0%)
Query: 14 LAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLR 73
L VA V L+ +V + ++ M+ + + L + ++ ++ R
Sbjct: 8 LIVAAMVFVIACLLVLSVALYWRHRETRKRIMEKIRQDGLELSGVEAEPAVQEITGAK-R 66
Query: 74 TRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGII 133
K++ + + AG R E + + + + + + ++
Sbjct: 67 GPIVSFFDRVGKRMKTEKPSELRAQQLRFLRAGIRMENAPAVFMGAKCLGGLGLAFGFLL 126
Query: 134 WIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLIC 193
+ L+ +L A VGF P +W+ +R+ ++R PDALDL+++C
Sbjct: 127 LKTVFFSLM--SARLTAVAACATALVGFYLPDLWLRLKTSRRRKQLRRGLPDALDLMVVC 184
Query: 194 VESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRN 253
VE+G+ ID A RV+E++ + P+S+E+ EL R+ A N RT ++ V +
Sbjct: 185 VEAGMGIDSATYRVSEEMKLTNAPMSDELKYLNLELRAGKARRDALRNLALRTDLEDVNS 244
Query: 254 ATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILV 313
T LIQ+D++GTS+ +LRV R++R AE+ AA L KL +P+I+F P L +V
Sbjct: 245 LTTLLIQTDKFGTSVAQALRVHSDSFRTKRHQMAEELAAKLPVKLVLPLILFIFPSLFVV 304
Query: 314 IIGPAILSIIDTM 326
I+GPA++ T
Sbjct: 305 IMGPAMIRAFRTF 317
>gi|264678228|ref|YP_003278135.1| type II secretion system protein [Comamonas testosteroni CNB-2]
gi|262208741|gb|ACY32839.1| type II secretion system protein [Comamonas testosteroni CNB-2]
Length = 303
Score = 206 bits (525), Expect = 3e-51, Method: Composition-based stats.
Identities = 81/313 (25%), Positives = 145/313 (46%), Gaps = 19/313 (6%)
Query: 14 LAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLR 73
L VA+ T ++ A+ + + VA R Q +T +D +
Sbjct: 2 LIVALLTFTAVMLAAGALFFWATPT---------VAERR----LQSLTPTSQDKGWTETV 48
Query: 74 TRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGII 133
+ + + + AG R E + + V+ ++PI LG+
Sbjct: 49 VKLVGPFAHLSS---PTKDSDATPLRLRFLNAGIRHESAPLLYFGVKTLLPI---ALGLA 102
Query: 134 WIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLIC 193
+ + ++ V P++ + + +R+ I +PDA DL+L+C
Sbjct: 103 VYSLMRAASKADSTQLLFFPLVTALVACYLPNLVLRWMASRRKREIFENFPDAADLMLVC 162
Query: 194 VESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRN 253
VE+G+ +D AL +V ++I +S L+EE+ T E+ R+ + N RT +D +
Sbjct: 163 VEAGMGLDAALGKVTDEIRIKSEALAEELHWTNLEMRAGSTREKSLRNLAARTGVDEIHT 222
Query: 254 ATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILV 313
T L Q+DR+GTSIG+SLRV + R +R M AE+ AA + K+ +P++ P +I+V
Sbjct: 223 FTAMLTQADRFGTSIGESLRVFSDDLRHKRQMRAEELAAKIPTKMLLPLVTCIFPAIIMV 282
Query: 314 IIGPAILSIIDTM 326
++GPAI+ I+ +
Sbjct: 283 VLGPAIIRIVRMI 295
>gi|187927682|ref|YP_001898169.1| type II secretion system protein [Ralstonia pickettii 12J]
gi|187724572|gb|ACD25737.1| type II secretion system protein [Ralstonia pickettii 12J]
Length = 320
Score = 206 bits (525), Expect = 3e-51, Method: Composition-based stats.
Identities = 82/319 (25%), Positives = 152/319 (47%), Gaps = 12/319 (3%)
Query: 9 FDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSA 68
+ + + + V+ F ++ R++ + Q
Sbjct: 4 LYSNQYFILVLIFVAAFGGALGLLH-LFSPNRARGRIQQIGG--------QTVGADLAGG 54
Query: 69 SSRLRTRDSKSLRNFVKKLNL-KAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIF 127
+ V +L+L K + + + AG+R ++ ++ V+ V+ I+
Sbjct: 55 PDHAWVEKLATWAKPVSQLSLPKDGWENSQLRIRFMNAGWRQPWAPSLYFAVKTVLAILL 114
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
+ ++ + + + L V L+ +G+ P+ ++ V+ RQ + +PD L
Sbjct: 115 PLAALLVLSSRPEHHDQEVVLAVLG--LLSAIGYYLPNAALARKVEHRQRDVFEEFPDML 172
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQ 247
DLL +CVE+G+ +D A+ RV++++ + ++EEM LT+ EL ++ A N RT
Sbjct: 173 DLLTVCVEAGLGLDAAMMRVSDELALRCPVMAEEMELTLLELRSGFPKEKALTNLALRTG 232
Query: 248 MDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFL 307
++ V LIQ+DR+GTS+ DSLRVL R++R M AE++AA + KL P+I F
Sbjct: 233 VEDVDRFASMLIQADRFGTSLADSLRVLSDMLRTKRRMRAEEQAAKIALKLLFPLIFFIF 292
Query: 308 PVLILVIIGPAILSIIDTM 326
P L+LV++GPA + I +
Sbjct: 293 PTLLLVLLGPAFIQIYRVL 311
>gi|163846103|ref|YP_001634147.1| type II secretion system protein [Chloroflexus aurantiacus J-10-fl]
gi|222523838|ref|YP_002568308.1| type II secretion system protein [Chloroflexus sp. Y-400-fl]
gi|163667392|gb|ABY33758.1| type II secretion system protein [Chloroflexus aurantiacus J-10-fl]
gi|222447717|gb|ACM51983.1| type II secretion system protein [Chloroflexus sp. Y-400-fl]
Length = 311
Score = 206 bits (524), Expect = 5e-51, Method: Composition-based stats.
Identities = 82/314 (26%), Positives = 148/314 (47%), Gaps = 15/314 (4%)
Query: 14 LAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLR 73
L VA + +I AV + + +R+ L + ++ R+
Sbjct: 5 LIVAGIVVIGASLIIVAVRQMNQSR-AISERLDQYTDISLSLEELELQQ----PFRERVL 59
Query: 74 TRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGII 133
+SL N + + LK E + L+ AG S N+ + +R+ + I+ ++ +
Sbjct: 60 VPLFRSLLNTLGRFGLKQ--NQERLRINLQLAGNPGNISPNMFIGLRMALAIVLFVVIGL 117
Query: 134 WIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLIC 193
+FG PF + ++ G +G+ P +W+ +++R+ +I +A PDALDLL I
Sbjct: 118 LVFG-----RLPFMQALMGALIAGMIGYILPGIWLDRKIKERKKNILKALPDALDLLCIS 172
Query: 194 VESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRN 253
VE+G++ D AL+RVA+ LS E + ++ R+ A + RT ++ V+
Sbjct: 173 VEAGLAFDLALQRVAQKWDN---ELSREFQRVLQDIRLGRTRREALRDLVTRTGVEDVQT 229
Query: 254 ATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILV 313
A+IQ+D+ G S+ LR+ + R R AE+ A K+ +PM+ P L +V
Sbjct: 230 FVSAVIQADQLGVSMSKILRIQSDQLRVRRRQRAEEAAQKAPVKMLIPMVFLIFPALFVV 289
Query: 314 IIGPAILSIIDTMK 327
I+GPA+ I+ +
Sbjct: 290 ILGPAVPRIMQALG 303
>gi|116620536|ref|YP_822692.1| type II secretion system protein [Candidatus Solibacter usitatus
Ellin6076]
gi|116223698|gb|ABJ82407.1| type II secretion system protein [Candidatus Solibacter usitatus
Ellin6076]
Length = 315
Score = 205 bits (522), Expect = 7e-51, Method: Composition-based stats.
Identities = 78/230 (33%), Positives = 124/230 (53%), Gaps = 4/230 (1%)
Query: 97 NIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILI 156
N+ L AGFR E +L + VR++ + LIL ++ + + +++G +
Sbjct: 82 NLKVDLIRAGFRGENALAVFYGVRILTTLGMLILCVM----MEARMPPNPVMQLGLMGSG 137
Query: 157 GYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSV 216
G+ P ++ V KRQ +++ + PDALDLL++ +E+G+ +DQA++ VA ++
Sbjct: 138 ICAGWILPRFFLEKRVAKRQETLRLSLPDALDLLVVSIEAGLGLDQAIQHVARELYASHP 197
Query: 217 PLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLV 276
LS+EM L E+ R A NF RT R LIQ+DR+GTS+G+SLR
Sbjct: 198 QLSDEMQLVTLEMRAGKRRSEALRNFAERTGEAEFRKLVAILIQNDRFGTSMGESLRTHS 257
Query: 277 SETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
R+ R EAE++A +G KL P+ F LP +++V GP IL I +
Sbjct: 258 DFLRTRRRQEAEERAGKVGVKLVFPIFFFILPSMLVVAAGPGILQIFKYL 307
>gi|197106463|ref|YP_002131840.1| Flp pilus assembly protein TadC [Phenylobacterium zucineum HLK1]
gi|196479883|gb|ACG79411.1| Flp pilus assembly protein TadC [Phenylobacterium zucineum HLK1]
Length = 320
Score = 204 bits (520), Expect = 1e-50, Method: Composition-based stats.
Identities = 109/311 (35%), Positives = 163/311 (52%), Gaps = 8/311 (2%)
Query: 15 AVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRT 74
AVA+ V+ F I AV+ + +R +S A R LR + + R
Sbjct: 15 AVALAVGVANFLAILAVLRALSPKDLVRERARSHARRRNDLRAALLQPRRGA------RP 68
Query: 75 RDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIW 134
R R V+ L L L AG+RS ++++ L ++++ P+ +
Sbjct: 69 RSVGLARRLVELLKLNRDGRAGGAAALLVQAGWRSPDAMHVFLALKVLAPLALAAAAWLL 128
Query: 135 IFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICV 194
G L + R+ A + G P + + N +QKR I+RA PDALDL +IC
Sbjct: 129 APGV--LHDDDPLRRLAATLGGAVAGLYLPRLMLKNAIQKRSLKIQRALPDALDLFVICA 186
Query: 195 ESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNA 254
E+G+S+D AL RV+ +IG + L++E+ LT EL FLP+R+ A N R VR
Sbjct: 187 EAGLSLDAALARVSREIGPAAPELADELGLTAVELGFLPDRREALLNLTRRVAAPQVRGL 246
Query: 255 TQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVI 314
L+Q+++YGT + +LRVL +E R R+M+AE+KAA L LTVPMI F LP L +V+
Sbjct: 247 VNTLVQTEKYGTPLAQALRVLAAEFRDTRMMKAEEKAARLPATLTVPMIAFILPPLFVVL 306
Query: 315 IGPAILSIIDT 325
IGPAI+ ++ T
Sbjct: 307 IGPAIVQVLTT 317
>gi|320161469|ref|YP_004174693.1| putative bacterial type II secretion system protein [Anaerolinea
thermophila UNI-1]
gi|319995322|dbj|BAJ64093.1| putative bacterial type II secretion system protein [Anaerolinea
thermophila UNI-1]
Length = 319
Score = 204 bits (520), Expect = 1e-50, Method: Composition-based stats.
Identities = 75/314 (23%), Positives = 145/314 (46%), Gaps = 11/314 (3%)
Query: 14 LAVAITTAVSIFSLIY-AVVIPSLGSGEL-EKRMKSVAVEREILRKQQITSLQKDSASSR 71
+ V + +L+Y + P+ L ++R++ E + ++I S R
Sbjct: 8 IGVVGLVVIGAGALVYIGLRNPTSADDRLLQQRLEEFNQRGEQVDLEKIE--LSLPFSER 65
Query: 72 LRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILG 131
+ ++ L + + + D I KL AG + + L ++ +
Sbjct: 66 VIFPMARKLGEIAVRFTPQNAMQD--INRKLELAGNPGKLDATVFLALQFIAG--GFFGA 121
Query: 132 IIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLL 191
++++ Y +PF + V+ +GF P +W+++ + +RQ I+++ PDALDLL
Sbjct: 122 VLFLAMYFGQSNWPFGQKFLVVLGGTLLGFFFPQIWLTSKISRRQKEIRKSMPDALDLLT 181
Query: 192 ICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCV 251
ICVE+G+ D A+ +VAE LS I E+ R+ A + R + +
Sbjct: 182 ICVEAGLGFDAAMAKVAEKWES---ELSLAFARVIQEIQLGKTRRDALRDMAERIGIPEM 238
Query: 252 RNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLI 311
+ A+IQS++ G S+ LR+ + R R AE++A K+ +PM + P L+
Sbjct: 239 TSFVAAVIQSEQLGVSMAKVLRIQSDQMRVRRRQAAEEEAHKAPVKMLIPMALLIFPSLM 298
Query: 312 LVIIGPAILSIIDT 325
+V++ PA L ++++
Sbjct: 299 IVLMTPAALRLMNS 312
>gi|296156494|ref|ZP_06839332.1| Type II secretion system F domain protein [Burkholderia sp. Ch1-1]
gi|295893093|gb|EFG72873.1| Type II secretion system F domain protein [Burkholderia sp. Ch1-1]
Length = 318
Score = 204 bits (520), Expect = 1e-50, Method: Composition-based stats.
Identities = 81/315 (25%), Positives = 153/315 (48%), Gaps = 12/315 (3%)
Query: 13 ELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRL 72
++A+ + +F + L +++R++ +A Q + + D+ + +
Sbjct: 5 QIAMLGVMFLIVFGAALK-AMTLLRPDPVQRRIEELA--------QPGVASEADAGAEKN 55
Query: 73 RTRDSKSLRNFVKKLNLKAILVD-ENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILG 131
+ V +L+L D + + AG R+ + I + V+ + +
Sbjct: 56 WVETVTKVSERVARLSLPKEDWDKSALRLRFANAGIRTPSAPAIYFAAKTVLALSLPAVA 115
Query: 132 IIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLL 191
+I+ + + V+ +GF P++ ++ LV+ RQ + PDALDL+
Sbjct: 116 LIFF--GNAFEADQRIYLLLTVLAASALGFYLPNLVMTRLVESRQRKLFEDLPDALDLMT 173
Query: 192 ICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCV 251
+CVE+G+ +D A+ RV ++IG +S L +E + + EL R A N RT ++ +
Sbjct: 174 VCVEAGLGLDAAMMRVTQEIGVKSHALKDEFDMVLLELRAGSGRDKALRNLSLRTGVEDI 233
Query: 252 RNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLI 311
LIQ+DR+GTS+GDSLRV R++R + AE+ AA + KL P++ F P L+
Sbjct: 234 DTLAAMLIQADRFGTSVGDSLRVYTDNLRTKRRLRAEELAAEIALKLLFPLMFFIFPTLL 293
Query: 312 LVIIGPAILSIIDTM 326
V++GP+ + I+ +
Sbjct: 294 AVLVGPSAIQIVRQL 308
>gi|239908016|ref|YP_002954757.1| hypothetical membrane protein [Desulfovibrio magneticus RS-1]
gi|239797882|dbj|BAH76871.1| hypothetical membrane protein [Desulfovibrio magneticus RS-1]
Length = 281
Score = 204 bits (519), Expect = 2e-50, Method: Composition-based stats.
Identities = 77/246 (31%), Positives = 131/246 (53%), Gaps = 4/246 (1%)
Query: 83 FVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLL 142
F + + + + L AG+R +L I ++ ++ L+LG +
Sbjct: 37 FGELVKPREAQELTKARSSLVQAGYRQPSALEIYWGIKAGAALVGLVLGALAAMS----G 92
Query: 143 EYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQ 202
+ P Q ++ V+ + GF P + + + V+ RQ++I+++ PDALDLL++CVE+G+ +D
Sbjct: 93 KVPGQYKLFVVVGLTAAGFYIPGMILDSRVKARQTAIQKSLPDALDLLVVCVEAGMGLDA 152
Query: 203 ALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSD 262
A+ RV +++ + LS E+ L EL R+ A +N R ++ V + LIQ+D
Sbjct: 153 AIYRVCQEMSLKDPILSAELRLLTLELRAGKARREALKNLSARIGLEDVGSLVAMLIQTD 212
Query: 263 RYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
+GTSI +LRV R++R AE+ AA L KL +P+I F P L++VI+GPA + I
Sbjct: 213 MFGTSIAQTLRVYADSMRTKRFQLAEELAAKLPVKLLMPLIFFIFPTLLIVILGPAGIRI 272
Query: 323 IDTMKD 328
Sbjct: 273 FQMFGG 278
>gi|261252092|ref|ZP_05944665.1| flp pilus assembly protein TadC [Vibrio orientalis CIP 102891]
gi|260935483|gb|EEX91472.1| flp pilus assembly protein TadC [Vibrio orientalis CIP 102891]
Length = 314
Score = 204 bits (519), Expect = 2e-50, Method: Composition-based stats.
Identities = 80/318 (25%), Positives = 139/318 (43%), Gaps = 17/318 (5%)
Query: 11 ATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASS 70
+ + ++ +I+ + + L S ++ + R + T S
Sbjct: 14 DEQAFFLVIVLIATVLIIFTISLLLLSS--------KSPLKSRLARLKDATRADTLKKGS 65
Query: 71 RLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLIL 130
RL KSL + + E+I KL AG+ +L ++ V ++ ++
Sbjct: 66 RL----EKSLESLAPAMKSSNSKESESIRVKLMHAGYHDASALTFFYAMKGVSMVVGFLM 121
Query: 131 GIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLL 190
F + +R A+I G P+V +S +V KRQS I+ PDALDLL
Sbjct: 122 AAGIYFFAPE-----MSMRNIAMIGSVAFGLYCPNVVLSMMVDKRQSRIRSGIPDALDLL 176
Query: 191 LICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDC 250
++C ESG+ + ALRRVA+++ ++E+ ++S AF + RT +
Sbjct: 177 VVCTESGLGFNAALRRVADELTISHPDFADELDTVCVKISAGVEMSDAFNDLIKRTGLSE 236
Query: 251 VRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVL 310
+ L + R G S+ +LR + R +R E E+ AA + K+ P++IF P
Sbjct: 237 IAGLVTMLAHASRIGGSLSQTLREYTEDYRDKRNQEIEEIAAKIPTKMIFPLLIFIWPCF 296
Query: 311 ILVIIGPAILSIIDTMKD 328
+V IGP++L TM +
Sbjct: 297 FIVAIGPSMLLFTSTMGN 314
>gi|167566943|ref|ZP_02359859.1| type II secretion system protein [Burkholderia oklahomensis EO147]
gi|167574012|ref|ZP_02366886.1| type II secretion system protein [Burkholderia oklahomensis C6786]
Length = 318
Score = 204 bits (519), Expect = 2e-50, Method: Composition-based stats.
Identities = 84/309 (27%), Positives = 157/309 (50%), Gaps = 6/309 (1%)
Query: 18 ITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDS 77
+ +F+++ A V+ + + A E + + + + + + +
Sbjct: 9 LLLLFGLFAIVVAGVMAAWFAFAPRG----FARRLEQIGGGAVAAGDGPAPQTVWIEKLA 64
Query: 78 KSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFG 137
+ R K K+ + + +L AG+RS + + + V+ + + ++ G
Sbjct: 65 EISRPISKLSLPKSGWENSPLRLRLINAGWRSASAAPLYFAAKTVLALALPAAAMPFLIG 124
Query: 138 YDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESG 197
+L + P+ L V ++ IG GF P+ +S + RQ I +PDALDLL +C+E+G
Sbjct: 125 -TELADSPYILSVM-LVTIGAFGFYLPNAVLSRRIASRQRVIVEDFPDALDLLTVCIEAG 182
Query: 198 ISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQA 257
+ +D L +VA+++ +S +++E+ L + E+ +++ A N RT + + +
Sbjct: 183 LGLDAGLMKVADELRLRSPVVADELGLMLLEMRSGFSKETALRNLALRTGAEDIDAFSAM 242
Query: 258 LIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGP 317
LIQ+DR+GTSIG SLRVL R++R M AE++AA + KL P+I P L+ V++GP
Sbjct: 243 LIQADRFGTSIGASLRVLSDTLRTQRRMRAEERAAKIALKLLFPLIFCIFPALLTVLLGP 302
Query: 318 AILSIIDTM 326
A + I T+
Sbjct: 303 AFIHIYRTL 311
>gi|239814537|ref|YP_002943447.1| type II secretion system protein [Variovorax paradoxus S110]
gi|239801114|gb|ACS18181.1| type II secretion system protein [Variovorax paradoxus S110]
Length = 301
Score = 203 bits (518), Expect = 2e-50, Method: Composition-based stats.
Identities = 77/314 (24%), Positives = 143/314 (45%), Gaps = 20/314 (6%)
Query: 14 LAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLR 73
+ I V++ + + L E+R+++VA + S
Sbjct: 1 MLFPILVFVAVSLAVGGFAVWML-PTRTEQRLRAVAP----------------AGKSAWI 43
Query: 74 TRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGII 133
K + F + + + K AG R + ++ ++P+ F L +
Sbjct: 44 ETAVKIVGPFAQLSSPTGEGETSPLRLKFLNAGVRHPDASLFYFGLKTLLPLGFAALAFV 103
Query: 134 WIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLIC 193
+ L + V L+ G P++ + +++ RQ I +PDA DL+L+C
Sbjct: 104 TVRAAGADDGVTTLLWLAVVALL---GCYLPNIVLRMMIKSRQREIFENFPDAADLMLVC 160
Query: 194 VESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRN 253
VE+G+ +D AL +V E+I +S L++E+ T E+ R+ + N RT ++ +
Sbjct: 161 VEAGLGLDAALVKVTEEIRVKSEALAQELHWTNLEMRAGSTREKSLRNLALRTGVEEIGT 220
Query: 254 ATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILV 313
L Q+DR+GTSIG+SLRV + R +R + AE+ AA + K+ +P+++ P + V
Sbjct: 221 FATMLTQADRFGTSIGESLRVFSEDLRHKRQVRAEELAAKVPTKMLLPLVVCIFPCISAV 280
Query: 314 IIGPAILSIIDTMK 327
I+ PA + I+ +
Sbjct: 281 ILTPAAIRIVRIIG 294
>gi|320101695|ref|YP_004177286.1| type II secretion system F domain-containing protein [Isosphaera
pallida ATCC 43644]
gi|319748977|gb|ADV60737.1| Type II secretion system F domain protein [Isosphaera pallida ATCC
43644]
Length = 318
Score = 203 bits (517), Expect = 3e-50, Method: Composition-based stats.
Identities = 80/322 (24%), Positives = 148/322 (45%), Gaps = 18/322 (5%)
Query: 8 LFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDS 67
+ +L VA+ A+++ L+ + L + +K R + S +
Sbjct: 9 MTTVVQLVVALCGALAVVGLMTMLAPK--EKDRLGELLK---------RDKAGPSRLAEE 57
Query: 68 ASSRLRTRDSKSLRNFVKKLNLKAILVD---ENIVNKLRAAGFRSEYSLNILLVVRLVVP 124
+ + K + V+++ + + I L AGFRS +++I + V+L
Sbjct: 58 RAKKKNEEVKKKIAKVVEEIGKNSAASEKDMSQIKLDLINAGFRSPNAVSIFMGVKL--- 114
Query: 125 IIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWP 184
IF + + + + + + +G APS ++ L +RQ I P
Sbjct: 115 -IFFLTSVAVVVPLVYTNYGFTTTGILYMAIGAAIGMIAPSFFLGYLKSRRQEQIFLTLP 173
Query: 185 DALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYN 244
DALDL+++CVE+G+ +D A R+A ++ + L EE + ++ R+ +
Sbjct: 174 DALDLMVVCVEAGLGLDAAFNRIASELQTAAPVLCEEFAIANFQIRMGRPRREVLRDLGV 233
Query: 245 RTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMII 304
RT + +R LIQ++R+G+SI +LRV R +R AE+KAA KL P+++
Sbjct: 234 RTGVADLRALAAVLIQAERFGSSIASALRVQSDSMRIKRRQIAEEKAAKTAVKLLFPLVL 293
Query: 305 FFLPVLILVIIGPAILSIIDTM 326
F P + +V++GPA +SI +
Sbjct: 294 FIFPGIFVVLVGPAAISIKQNL 315
>gi|82703469|ref|YP_413035.1| type II secretion system protein [Nitrosospira multiformis ATCC
25196]
gi|82411534|gb|ABB75643.1| type II secretion system protein [Nitrosospira multiformis ATCC
25196]
Length = 313
Score = 203 bits (516), Expect = 4e-50, Method: Composition-based stats.
Identities = 75/318 (23%), Positives = 144/318 (45%), Gaps = 12/318 (3%)
Query: 9 FDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSA 68
++A +++ + V+ +L + R++ VA S + A
Sbjct: 1 MTPVQIAYLAVIFIAVAGAAFG-VMRALAPRPTKTRLEQVAAG---------NSPSQQKA 50
Query: 69 SSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFL 128
K + + AG+ + + + + +
Sbjct: 51 GDGWERTMVNLAGPLAKLALPSEGWETSVLRTRFMHAGYHARSVPMVYFAAKTGLALALP 110
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
+ ++++ LE + A++ + G+ P++ + LV +R+ + ++PDA+D
Sbjct: 111 AIFLLYV--GIGRLELDVNAALFALLSLAAFGYYLPNLVLGRLVLQRKRELFESFPDAID 168
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
L+ +CVE+G+ +D A+ RVAE++ +S L+ E+ L EL R+ A N RT +
Sbjct: 169 LMTVCVEAGLGLDAAMVRVAEEMRLRSKALASELHLVSLELRAGRTREQALRNLAMRTGV 228
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP 308
+ + L+Q+DR+GTS+ SLRV R+ R + AE+ AA + KL P+I F P
Sbjct: 229 EEIEALVSMLVQADRFGTSVAASLRVHSDTLRTTRRLRAEEAAAKIALKLLFPLIFFIFP 288
Query: 309 VLILVIIGPAILSIIDTM 326
L+LV++GPA ++I +
Sbjct: 289 SLLLVLMGPAFINIYRVL 306
>gi|299532601|ref|ZP_07045990.1| type II secretion system protein [Comamonas testosteroni S44]
gi|298719404|gb|EFI60372.1| type II secretion system protein [Comamonas testosteroni S44]
Length = 303
Score = 203 bits (516), Expect = 4e-50, Method: Composition-based stats.
Identities = 75/273 (27%), Positives = 132/273 (48%), Gaps = 6/273 (2%)
Query: 54 ILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSL 113
R Q +T +D + + + + + + AG R E +
Sbjct: 29 ERRLQSLTPTSQDKGWTETVVKLVGPFAHLSS---PTKDIDATPLRLRFLNAGIRHESAP 85
Query: 114 NILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQ 173
+ V+ ++P+ LG+ + R+ ++ V P++ + +
Sbjct: 86 LLYFGVKTLLPLS---LGLAVYSLMLTASKADSTQRLLFPLVAALVACYLPNLVLRWMAL 142
Query: 174 KRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLP 233
+R+ I +PDA DL+L+CVE+G+ +D AL +V E+I +S L+EE+ T E+
Sbjct: 143 RRKREIFENFPDAADLMLVCVEAGMGLDAALGKVTEEIRIKSEALAEELHWTNLEMRAGS 202
Query: 234 NRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAAS 293
R+ A N RT +D + T L Q+DR+GTSIG+SLRV + R +R M AE+ AA
Sbjct: 203 TREKALRNLAARTGVDEIHTFTAMLTQADRFGTSIGESLRVFSDDLRHKRQMRAEELAAK 262
Query: 294 LGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
+ K+ P++ P +I+V++GPAI+ + +
Sbjct: 263 IPTKMLFPLVTCIFPAIIMVVLGPAIIRVARMI 295
>gi|294012231|ref|YP_003545691.1| Flp pilus assembly protein TadC [Sphingobium japonicum UT26S]
gi|292675561|dbj|BAI97079.1| Flp pilus assembly protein TadC [Sphingobium japonicum UT26S]
Length = 322
Score = 202 bits (515), Expect = 5e-50, Method: Composition-based stats.
Identities = 77/313 (24%), Positives = 147/313 (46%), Gaps = 16/313 (5%)
Query: 16 VAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTR 75
+ ++I +L++ + + + + R+ V ++ + + R
Sbjct: 14 ILGFLFIAIVALVFGLSEVVMRNARVRSRLDLVGE----------GGASQNGSQTLRGER 63
Query: 76 DSKSLRNFVKKLNLKAIL----VDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILG 131
+S + V ++ + + ++ +L AAG+ S + + + RLV+
Sbjct: 64 NSSEWKKLVDRIEKMGVSLVDTNNVDLRRRLIAAGYMSPEAPKLFTLFRLVLTFALP--A 121
Query: 132 IIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLL 191
I I L+ +G P+++IS +RQ I +PDALDL+L
Sbjct: 122 IFVITSLRNPEPPTALTLYMVASLLAVLGLYMPNLYISAKASRRQEEIVHGFPDALDLML 181
Query: 192 ICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCV 251
+CVE+G+ ++ A+ RV ++ +S + + EL +RQ A + +D +
Sbjct: 182 VCVEAGLGLEAAMDRVGRELALSHPLVSAALGKVVLELRAGRSRQDALRRMADDVDVDEI 241
Query: 252 RNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLI 311
R+ LIQSD+ G+S+G +LRV +E R +R M AE+KA L L+VP++ LPV+I
Sbjct: 242 RSFATLLIQSDQLGSSVGQTLRVYAAEMREKRRMRAEEKAHRLPVLLSVPLVACMLPVMI 301
Query: 312 LVIIGPAILSIID 324
V++ PA++ ++
Sbjct: 302 GVLMLPAVVRVVR 314
>gi|148655425|ref|YP_001275630.1| type II secretion system protein [Roseiflexus sp. RS-1]
gi|148567535|gb|ABQ89680.1| type II secretion system protein [Roseiflexus sp. RS-1]
Length = 311
Score = 202 bits (515), Expect = 5e-50, Method: Composition-based stats.
Identities = 67/233 (28%), Positives = 116/233 (49%), Gaps = 7/233 (3%)
Query: 96 ENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVIL 155
E + L AG + +RL + ++ I+ F + +
Sbjct: 83 ERLRISLAQAGNPGNLTPMQFSGIRLALAVVLFIVVGAVTFLQG----MDVAQAMMYTAI 138
Query: 156 IGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQS 215
+G+ P +W+ ++KR+ +I +A PDALDLL ICVE+G+S DQA++R+ E
Sbjct: 139 GAGMGYLLPGIWLGQQIKKRKKAIVKALPDALDLLCICVEAGLSFDQAMQRLTEKWDD-- 196
Query: 216 VPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVL 275
PLS+E +++ R+ A ++ +R +D V+ A+IQ+++ G SIG LR+
Sbjct: 197 -PLSKEFKRVLSDTRLGRPRRDAMKDMIDRCGVDDVQTFIGAVIQAEQLGVSIGRILRIQ 255
Query: 276 VSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMKD 328
+ R R AE++A K+ PM+ P L +VI+GPA+ I+ ++
Sbjct: 256 SDQMRIRRRQRAEEEAHKAPIKMLFPMVFLIFPALFIVILGPAVPRIMKSLGG 308
>gi|319783869|ref|YP_004143345.1| type II secretion system F domain [Mesorhizobium ciceri biovar
biserrulae WSM1271]
gi|317169757|gb|ADV13295.1| Type II secretion system F domain [Mesorhizobium ciceri biovar
biserrulae WSM1271]
Length = 320
Score = 202 bits (513), Expect = 8e-50, Method: Composition-based stats.
Identities = 63/259 (24%), Positives = 131/259 (50%), Gaps = 4/259 (1%)
Query: 65 KDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVP 124
+ + +R + K + F + + + + + KL AG+ ++ ++R
Sbjct: 64 QKKNTGIVREKAVKRAQEFYARSDPENV---ARLRMKLIQAGYMEPRAVGTFFLIRF-TA 119
Query: 125 IIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWP 184
+I +G+ + + + R VIL G G+ P + +S V++R+ + +P
Sbjct: 120 MIGTAIGVFVLNRWMASPDATMASRWTFVILSGAAGYFLPGLVLSQKVRERRREYRNGFP 179
Query: 185 DALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYN 244
D +DL+++C ++G+S++ + RV++++ LS+ + L EL + A + +
Sbjct: 180 DFMDLMIVCSDAGMSMEAGIERVSKELAKTYPALSQNLQLVSLELRAGRSLDDALKALAD 239
Query: 245 RTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMII 304
R +D VR+ L QS GTS+ +LRV + R +R+ AE+KA +L K++VP+++
Sbjct: 240 RLSLDEVRSFATLLQQSKELGTSLSGALRVFSDDMRHKRMSLAEEKAHALPAKMSVPVVV 299
Query: 305 FFLPVLILVIIGPAILSII 323
LPV++++ P I+ +
Sbjct: 300 CILPVVLMIAAIPVIVKMT 318
>gi|325109819|ref|YP_004270887.1| type II secretion system F domain protein [Planctomyces
brasiliensis DSM 5305]
gi|324970087|gb|ADY60865.1| Type II secretion system F domain protein [Planctomyces
brasiliensis DSM 5305]
Length = 333
Score = 202 bits (513), Expect = 9e-50, Method: Composition-based stats.
Identities = 63/314 (20%), Positives = 144/314 (45%), Gaps = 13/314 (4%)
Query: 15 AVAITTAVSIFSLIYAVVIPSLGSG-ELEKRMKSVAVEREILRKQQITSLQKDSASSRLR 73
+ +++ L+Y+V G ++ R++ + T++++ R
Sbjct: 14 LLPFVVVIAVTGLVYSVTALMTGRDSRIDSRLEELEA------MSGSTTVERAGWKRRFL 67
Query: 74 TRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGII 133
+ + + ++ + + +L AG+ + + R + ++ + + ++
Sbjct: 68 APLQELMPQSLVRVATETTEGGSRVQKRLMQAGYYGHDYVPLFAAARCGLALLPVAVAVV 127
Query: 134 -WIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLI 192
+ G+ VG+ +G P +W+ V++RQ++ +A PD DLL+
Sbjct: 128 CYAKGWGTTSTIAMWTAVGS-----GIGVVLPGLWLDRAVRRRQATFMKAIPDLFDLLVT 182
Query: 193 CVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVR 252
C+ SG++I+ +++RVAE++ L+ E+ E+ + A ++F R ++ +R
Sbjct: 183 CLSSGLTIEASIKRVAEELRLAHPDLANELARVQNEIHLGISVVDALKHFAERCNLNPIR 242
Query: 253 NATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLIL 312
+ Q+ +YGT ++LRV + R++R AE++A K+ P ++ P + +
Sbjct: 243 SLAMMCEQTRQYGTRAIEALRVHANMMRTQREQRAEERARKAAVKILAPTVLLIFPSVFV 302
Query: 313 VIIGPAILSIIDTM 326
V+ GPA + I +TM
Sbjct: 303 VVAGPAAIQIAETM 316
>gi|260463899|ref|ZP_05812095.1| type II secretion system protein [Mesorhizobium opportunistum
WSM2075]
gi|259030274|gb|EEW31554.1| type II secretion system protein [Mesorhizobium opportunistum
WSM2075]
Length = 321
Score = 201 bits (512), Expect = 1e-49, Method: Composition-based stats.
Identities = 71/312 (22%), Positives = 152/312 (48%), Gaps = 17/312 (5%)
Query: 18 ITTAVSIFSLIYAVVIPSLGSGELEKRMK----SVAVEREILRKQQITSLQKDSASSRLR 73
+ A+ ++ + +V ++++R+K VA E ++K+ ++ +R
Sbjct: 22 LLLALGTVAVGWPMVAAKGDRNDVKRRLKVDHGPVAARPEPVQKK---------NANVVR 72
Query: 74 TRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGII 133
+ K + F K + + + + KL AG+ ++ + ++R +I +G
Sbjct: 73 EKAVKRAQEFYAKSDPENV---ARLRMKLIQAGYMEPRAVGMFFIIRF-SALIGGAIGAF 128
Query: 134 WIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLIC 193
+ + + R +IL G G+ P + +S +++ + +PD +DL+++C
Sbjct: 129 VLNRWLASADATMTSRWAFIILSGVAGYFLPGLVLSQKTREKMREYRNGFPDFMDLMIVC 188
Query: 194 VESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRN 253
++G+S++ + RV++++ LS+ + L EL + A + +R +D VR+
Sbjct: 189 SDAGMSMEAGIERVSKELARTYPALSQNLQLVSLELRAGRSLDDALKALADRLSLDEVRS 248
Query: 254 ATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILV 313
L QS GTS+ +LRV E R +R+ AE+KA +L K+++P+ + LPV++++
Sbjct: 249 FATLLQQSKELGTSLSGALRVFSDEMRHKRMSLAEEKAHALPAKMSIPVTVCILPVVLMI 308
Query: 314 IIGPAILSIIDT 325
I P I+ + T
Sbjct: 309 AIIPIIVKMTGT 320
>gi|241662160|ref|YP_002980520.1| type II secretion system protein [Ralstonia pickettii 12D]
gi|240864187|gb|ACS61848.1| type II secretion system protein [Ralstonia pickettii 12D]
Length = 313
Score = 201 bits (512), Expect = 1e-49, Method: Composition-based stats.
Identities = 77/309 (24%), Positives = 145/309 (46%), Gaps = 11/309 (3%)
Query: 20 TAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKS 79
T + +F + + + + L++R+ + ++ L A S + +
Sbjct: 12 TFIVVFGAVL-IALFVVRPTILQQRLGQID--------RESPGLAPKQAPSDWLRKLGRL 62
Query: 80 LRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYD 139
R + K D + + AG+RS ++ I ++ + ++ + +
Sbjct: 63 ARPLARASLPKEGWEDSALKARFVHAGWRSPEAVPIYFGIKTALAGGIPLVLSLLLVRRF 122
Query: 140 KLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGIS 199
L + P+V ++ +++R+ I A+PD+LDL+++CVE+G+
Sbjct: 123 DSDHETAYLAALLAGALFGF--YLPNVVLAMKIKRRKRDIFEAFPDSLDLIMVCVEAGLG 180
Query: 200 IDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALI 259
+D A+ RV ED+ ++ E L EL R+ A NF RT ++ V LI
Sbjct: 181 LDSAVLRVVEDMRDARPAMAHEYELLTLELRAGLAREKALRNFAARTGVEDVSMLVAMLI 240
Query: 260 QSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAI 319
Q+DR+GTS+ +SLRV R++R M AE++AA +G K+ P+I P L +V++GPA
Sbjct: 241 QADRFGTSVAESLRVHSDMLRTKRQMLAEERAAKIGTKVLFPLIFCLFPALYVVLLGPAG 300
Query: 320 LSIIDTMKD 328
+ I+ ++
Sbjct: 301 IQIMAGLRS 309
>gi|197117442|ref|YP_002137869.1| Flp pilus assembly protein [Geobacter bemidjiensis Bem]
gi|197086802|gb|ACH38073.1| Flp pilus assembly protein, putative [Geobacter bemidjiensis Bem]
Length = 302
Score = 201 bits (512), Expect = 1e-49, Method: Composition-based stats.
Identities = 79/314 (25%), Positives = 145/314 (46%), Gaps = 20/314 (6%)
Query: 19 TTAVSIFSLIYAVVI-----PSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLR 73
S+F+ + V + +R+ E R Q + S + +
Sbjct: 4 LVVFSVFASVLLVSAILCHYAFFSKSAVAQRL-----EEFFPRPQSAKTGMVPSGTWAYK 58
Query: 74 TRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGII 133
L +K+ L + V L AAGFR + ++ L +L++ + ++ ++
Sbjct: 59 ------LAKIGEKVKLPQK-EESKYVKALVAAGFR-KDAVYRFLGAKLLLAGVLPLICLL 110
Query: 134 WIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLIC 193
+ + + + A +G+ AP+ W+ V+ RQ I PD LDL+ +C
Sbjct: 111 AVATTSR--TFFTTQTLLATAFFSIIGYLAPTYWLHLKVKARQLEIFHPLPDILDLVTLC 168
Query: 194 VESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRN 253
VE+G+SID AL R E + PL+ E+ E+ R + ++ RT+++ + +
Sbjct: 169 VEAGLSIDAALIRTTETPQFRDNPLAIEIRQVTMEVRAGKPRVESLKDMAVRTRVEDIGS 228
Query: 254 ATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILV 313
T + Q++R+GTS+ +LR E R++R AE+ AA KL P+I+F P L++V
Sbjct: 229 FTTMVAQAERFGTSLSHALRTFSDELRTKRRQMAEEAAAKTTIKLIFPLIMFIFPALLVV 288
Query: 314 IIGPAILSIIDTMK 327
I+GPA++ + +
Sbjct: 289 ILGPAVVKLGKIFQ 302
>gi|297618076|ref|YP_003703235.1| type II secretion system F domain protein [Syntrophothermus
lipocalidus DSM 12680]
gi|297145913|gb|ADI02670.1| Type II secretion system F domain protein [Syntrophothermus
lipocalidus DSM 12680]
Length = 295
Score = 201 bits (512), Expect = 1e-49, Method: Composition-based stats.
Identities = 78/316 (24%), Positives = 138/316 (43%), Gaps = 23/316 (7%)
Query: 13 ELAVAITTAVSIFSLIYAV-VIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSR 71
ELAV ++ F L V + +R++ ER+ Q++
Sbjct: 2 ELAVYGAVFLAGFCLTLGVGYTLFWERMAVLERLEHYTEERKKTIYQELNQPLSQRVFKP 61
Query: 72 LRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILG 131
L + ++ FV K +A ++L AG + + V ++LG
Sbjct: 62 LIGAALRGMKRFVPKEKARAY------EHRLTLAGNPHGLEAETFVAAKYGVFAAAVLLG 115
Query: 132 IIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLL 191
++ ++L+G G P ++++ ++R I ++ PD LDLL
Sbjct: 116 LL-------------TRSPWLLVLLGMAGLLLPDMYLNLCRRQRSEGILKSLPDVLDLLS 162
Query: 192 ICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCV 251
+ VE+G+ D AL++V E G PL++E + E+ R+ A + R ++D V
Sbjct: 163 VSVEAGLGFDAALQKVVEKSQG---PLADEFDTALNEIRMGKPRREALRDMARRVEVDDV 219
Query: 252 RNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLI 311
A++Q+D G SI + L V + R +R AE+KA K+ +PM+ F P +
Sbjct: 220 STFVGAVVQADTLGVSISNVLTVQAEQVRQKRRQRAEEKAQKAPVKILIPMLFFIFPTIF 279
Query: 312 LVIIGPAILSIIDTMK 327
+V++GPA+L I K
Sbjct: 280 IVLLGPALLQIGKVFK 295
>gi|89899611|ref|YP_522082.1| type II secretion system protein [Rhodoferax ferrireducens T118]
gi|89344348|gb|ABD68551.1| type II secretion system protein [Rhodoferax ferrireducens T118]
Length = 312
Score = 201 bits (512), Expect = 1e-49, Method: Composition-based stats.
Identities = 74/280 (26%), Positives = 134/280 (47%), Gaps = 7/280 (2%)
Query: 52 REILRKQQITSLQKDSASSRLRTRDSKSL-----RNFVKKLNLKAILVDENIVNKLRAAG 106
R + +Q++ L D+ R K + ++ + AG
Sbjct: 28 RPNVARQRLAGLVADAPPRPPIQHRWLHWIADATRPISKLSMPEEGFEKSSLKLRFAHAG 87
Query: 107 FRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSV 166
R+ + + ++ ++ + ++ + L+ L V + +G+ P++
Sbjct: 88 IRNANAASAFFGIKTLLTLGLPLVAFALLTLSGSPLKGNTLLLVMLALAA--LGYYGPNL 145
Query: 167 WISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTI 226
+S+LV RQ I ++PDALDL+ +CVE+G+ + A+ RVA+D+ +S L++EM L
Sbjct: 146 VLSHLVMVRQREIFESFPDALDLMTVCVEAGLGTEAAMMRVADDLQFKSPALADEMRLVN 205
Query: 227 AELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLME 286
EL R+ A N RT ++ V + Q++R+GTSI SLR+ R+ R
Sbjct: 206 LELRAGAVRERALRNLAIRTGVEEVDGFVTMISQAERFGTSIAASLRIHAELLRTRRRQR 265
Query: 287 AEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
AE+ AA + KL P+I P L++V++GPA++ I +
Sbjct: 266 AEEAAAKIALKLLFPLIFCIFPSLMVVLMGPAMIQIYRVL 305
>gi|309780755|ref|ZP_07675496.1| type II secretion system protein [Ralstonia sp. 5_7_47FAA]
gi|308920437|gb|EFP66093.1| type II secretion system protein [Ralstonia sp. 5_7_47FAA]
Length = 313
Score = 201 bits (511), Expect = 1e-49, Method: Composition-based stats.
Identities = 77/309 (24%), Positives = 144/309 (46%), Gaps = 11/309 (3%)
Query: 20 TAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKS 79
T + +F + + + + L +R+ + ++ L A S + +
Sbjct: 12 TFIVVFGAVL-IALFVVRPTILRQRLGQID--------RESPGLAPKQAPSDWLRKLGRL 62
Query: 80 LRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYD 139
R + K D + + AG+RS ++ I ++ + ++ + +
Sbjct: 63 ARPLARASLPKEGWEDSALKARFVHAGWRSPEAVPIYFGIKTALAGGIPLVLSLLLVRRF 122
Query: 140 KLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGIS 199
L + P+V ++ +++R+ I A+PD+LDL+++CVE+G+
Sbjct: 123 DSDHETAYLAALLAGALFGF--YLPNVVLAMKIKRRKRDIFEAFPDSLDLIMVCVEAGLG 180
Query: 200 IDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALI 259
+D A+ RV ED+ ++ E L EL R+ A NF RT ++ V LI
Sbjct: 181 LDSAVLRVVEDMRDARPAMAHEYELLTLELRAGLAREKALRNFAARTGVEDVSMLVAMLI 240
Query: 260 QSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAI 319
Q+DR+GTS+ +SLRV R++R M AE++AA +G K+ P+I P L +V++GPA
Sbjct: 241 QADRFGTSVAESLRVHSDMLRTKRQMLAEERAAKIGTKVLFPLIFCLFPALYVVLLGPAG 300
Query: 320 LSIIDTMKD 328
+ I+ ++
Sbjct: 301 IQIMAGLRS 309
>gi|253701804|ref|YP_003022993.1| type II secretion system protein [Geobacter sp. M21]
gi|251776654|gb|ACT19235.1| type II secretion system protein [Geobacter sp. M21]
Length = 302
Score = 201 bits (511), Expect = 1e-49, Method: Composition-based stats.
Identities = 81/314 (25%), Positives = 147/314 (46%), Gaps = 16/314 (5%)
Query: 14 LAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLR 73
L ++ +V + S I + +R+ E R Q + S + +
Sbjct: 5 LVFSVFVSVLLVSAILC-YYAFFSKSAVAQRL-----EEFFPRPQSAKTGMAPSGTWAYK 58
Query: 74 TRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGII 133
L +K+ L + V L AAGFR + + L +L++ + ++ ++
Sbjct: 59 ------LARIGEKVKLPQK-EESKYVKALVAAGFR-KDAFYRFLGAKLLLAGVLPLIYLL 110
Query: 134 WIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLIC 193
+ + + + A G +G+ AP+ W+ V+ RQ I PD LDL+ +C
Sbjct: 111 AVATPTR--TFFTTQTLLATAFFGIIGYLAPTYWLHLKVKARQLEIFHTLPDILDLVTLC 168
Query: 194 VESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRN 253
VE+G+S+D AL R E + PL+ E+ E+ R + ++ RT+++ + +
Sbjct: 169 VEAGLSMDAALIRTTETPQFRDNPLAIEIRQVTMEVRAGKPRVESLKDMALRTRVEDIGS 228
Query: 254 ATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILV 313
T + Q++R+GTS+ +LR E R++R AE+ AA KL P+I+F P L++V
Sbjct: 229 FTTMVTQAERFGTSLSHALRTFSDELRTKRRQTAEEAAAKTTIKLIFPLIMFIFPALLVV 288
Query: 314 IIGPAILSIIDTMK 327
I+GPA++ I +
Sbjct: 289 ILGPAVVQISRIFQ 302
>gi|85859132|ref|YP_461334.1| flp pilus assembly protein [Syntrophus aciditrophicus SB]
gi|85722223|gb|ABC77166.1| flp pilus assembly protein [Syntrophus aciditrophicus SB]
Length = 317
Score = 200 bits (510), Expect = 2e-49, Method: Composition-based stats.
Identities = 81/318 (25%), Positives = 149/318 (46%), Gaps = 3/318 (0%)
Query: 11 ATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASS 70
T + +++ + + + + E + + + I + S S +
Sbjct: 2 NTLILISVMIFGATILFLTGLYLYIRYVREHAQLLDKIEKGSSIPSM-DLDSGSDVSPAR 60
Query: 71 RLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLIL 130
+LR + + + K N L G+R ++ +++++ ++ L
Sbjct: 61 QLRALFVRITGRLGELVKPKKEDEVANFQKPLARIGYRGAHATLFFFGIKVLLAVLLPAL 120
Query: 131 GIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLL 190
++ + + + + VGF P++W+ + R+ I +PDALDL+
Sbjct: 121 FLMAKLLAG--IAVNPLAVMIITLALALVGFYLPNLWLRLKIGARKEKIMEGFPDALDLM 178
Query: 191 LICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDC 250
+ICVE+G+ +DQA+ RV E++ P+S+E E+ +R+ A N NRT++D
Sbjct: 179 VICVEAGMGLDQAINRVGEEMKLSCPPISDEFRTLNMEMRMGKSRREALRNMANRTELDD 238
Query: 251 VRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVL 310
V + LIQ+D++GTSIG +LRV R +R AE+KAA L KL P+I F P L
Sbjct: 239 VTSLVTLLIQTDQFGTSIGQALRVHSDSMRVQRRQRAEEKAAKLPLKLLFPLIFFIFPSL 298
Query: 311 ILVIIGPAILSIIDTMKD 328
+VI+GPA++ + +
Sbjct: 299 FVVIMGPAMIQVFHALSS 316
>gi|300704935|ref|YP_003746538.1| tad secretion system, secretion accessory protein [Ralstonia
solanacearum CFBP2957]
gi|299072599|emb|CBJ43949.1| Tad secretion system, secretion accessory protein [Ralstonia
solanacearum CFBP2957]
Length = 314
Score = 200 bits (510), Expect = 2e-49, Method: Composition-based stats.
Identities = 81/309 (26%), Positives = 155/309 (50%), Gaps = 11/309 (3%)
Query: 20 TAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKS 79
T + IF + + L L++R+ + ++ +Q+++ LR + +
Sbjct: 12 TFIIIFGAVLTALT-ILRPSALQRRLGQID-------REAPGRVQEETPHDWLR-KIGQI 62
Query: 80 LRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYD 139
+ K K + ++ + AG+R+ ++ I ++ ++ +L + + G
Sbjct: 63 AKPLAKASLPKDGWENSDLRARFVHAGWRAPEAIAIYFGIKTLLAAGLPLLLSLALLGRF 122
Query: 140 KLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGIS 199
L V ++ +GF P+V + +++RQ I A+PD+LDL+++CVE+G+
Sbjct: 123 DASHQTEYLTV--LLGAALIGFYLPNVLLRLKIRRRQRDIFEAFPDSLDLIMVCVEAGLG 180
Query: 200 IDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALI 259
+D A+ RV E++ ++EE L EL R+ A N RT ++ V LI
Sbjct: 181 LDAAVLRVVEEMRTARPAMAEEYELLTLELRAGLAREKALRNLAARTGVEDVSMLVAMLI 240
Query: 260 QSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAI 319
Q+DR+GTS+ +SLRV R++R M AE++AA +G K+ P+I P L +V++GPA
Sbjct: 241 QADRFGTSVAESLRVHSDMLRTKRHMLAEERAAKIGTKILFPLIFCIFPSLFVVLLGPAA 300
Query: 320 LSIIDTMKD 328
+ ++ ++
Sbjct: 301 IQVVGALRS 309
>gi|219850073|ref|YP_002464506.1| type II secretion system protein [Chloroflexus aggregans DSM 9485]
gi|219544332|gb|ACL26070.1| type II secretion system protein [Chloroflexus aggregans DSM 9485]
Length = 311
Score = 200 bits (509), Expect = 2e-49, Method: Composition-based stats.
Identities = 77/316 (24%), Positives = 149/316 (47%), Gaps = 16/316 (5%)
Query: 14 LAVAITTAVSI--FSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSR 71
+ + + T V + +LI V S + +R+ L + ++ R
Sbjct: 2 MEILVLTGVLVIGAALIIIAVRQMNQSRAISERLDQYTDVSLSLEELELQQ----PFRER 57
Query: 72 LRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILG 131
+ ++L +++ + LK E + L+ AG S N+ + +R+ + + +
Sbjct: 58 VLIPMFRALLSYLGRFGLKQ--NQERLRANLQMAGNPGNISPNMFIGLRMALALTLATVI 115
Query: 132 IIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLL 191
+ + G L++ + V + +G+ P +W+ +++R+ +I +A PDALDLL
Sbjct: 116 VPLVIGRLSLIQ-----ALAGVAIAFMIGYILPGIWLDRKIKERKKNILKALPDALDLLC 170
Query: 192 ICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCV 251
I VE+G++ D AL+RVA+ LS E + ++ R+ A + RT ++ V
Sbjct: 171 ISVEAGLAFDLALQRVAQKWDN---ELSHEFQRVLQDIRLGRTRREALRDMAARTGVEDV 227
Query: 252 RNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLI 311
+ A+IQ+D+ G S+ LR+ + R+ R AE+ A K+ +PM+ P L
Sbjct: 228 QTFVSAVIQADQLGVSMSKILRIQSDQLRTRRRQRAEEAAQKAPVKMLIPMVFLIFPALF 287
Query: 312 LVIIGPAILSIIDTMK 327
+VI+GPA+ I+ +
Sbjct: 288 VVILGPAVPRIMSALG 303
>gi|225174956|ref|ZP_03728953.1| type II secretion system protein [Dethiobacter alkaliphilus AHT 1]
gi|225169596|gb|EEG78393.1| type II secretion system protein [Dethiobacter alkaliphilus AHT 1]
Length = 306
Score = 200 bits (508), Expect = 3e-49, Method: Composition-based stats.
Identities = 79/313 (25%), Positives = 145/313 (46%), Gaps = 10/313 (3%)
Query: 18 ITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDS 77
+ V++ I AV++ L + L R V +R + D R R
Sbjct: 1 MVWLVNLLVFITAVLMVMLAATSL-GRKHEVMERLGQIRNMDTRPSEDDIFHRPFRERVI 59
Query: 78 KSLRNFVKKL--NLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWI 135
+ NL + +N+ L AG ++N LL ++++ I +LG+ ++
Sbjct: 60 TPFFHNAGNALGNLAPSEIRQNMEKNLIYAGHPWNLTVNTLLGLQVLFGIGLPVLGLFFL 119
Query: 136 FGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVE 195
++P + ++L P+ + +RQ I+R+ PD LDLLL+ V+
Sbjct: 120 GIVAPEHQFPGLFALLLLVLGF----MMPNTIVKRKATERQKEIQRSLPDMLDLLLVSVD 175
Query: 196 SGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNAT 255
+G++ D AL++VA+ + G LS E+ + E+ R A + NRT + +
Sbjct: 176 AGLAFDMALKKVADKMPG---ELSREIGKALDEIRMGKTRIEALRSMANRTGVPDISTFI 232
Query: 256 QALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVII 315
A+IQ+++ G++I +L V + R R M AE++A K+ P++ F P L +V++
Sbjct: 233 SAVIQAEQLGSNIAKTLDVQANTMRQRRRMRAEEEAMRAPIKMLFPLVFFIFPALFVVLL 292
Query: 316 GPAILSIIDTMKD 328
GPA + I+ T +
Sbjct: 293 GPAGIRIVQTFIN 305
>gi|330811031|ref|YP_004355493.1| type II secretion system protein; membrane protein [Pseudomonas
brassicacearum subsp. brassicacearum NFM421]
gi|327379139|gb|AEA70489.1| putative type II secretion system protein; putative membrane
protein [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
Length = 321
Score = 199 bits (507), Expect = 4e-49, Method: Composition-based stats.
Identities = 78/318 (24%), Positives = 149/318 (46%), Gaps = 16/318 (5%)
Query: 12 TELAVAITTAVSIFSLIYAVVIPSLG-SGELEKRMKSVAVEREILRKQQITSLQKDSASS 70
L VS + A+++ LG +++R+ + ++
Sbjct: 18 ARLLFVTVVGVSTVLAVVALMLLMLGLQDPVQRRLALI-----------KRGYAGNTVGQ 66
Query: 71 RLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLIL 130
+ L ++ L AG+RS ++ + VRL++P++ + +
Sbjct: 67 EAPSNLQLLLERVGQRFASTDQAHTSATQTLLTHAGYRSASAVQMYWAVRLMLPLLMVGV 126
Query: 131 GIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLL 190
++ + +++ + + AV L+ +G+ P++++ Q RQ ++ A+PDALDL+
Sbjct: 127 ALLLL----PMVKVSVAIGLLAVTLVAGIGWLLPAIYVGKRKQARQGRLRAAFPDALDLM 182
Query: 191 LICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDC 250
++CVESG+++ + RVAE++ V L+EE+ L A++ A + RT ++
Sbjct: 183 VVCVESGLALPTTIERVAEEMSVSQVELAEELALVNAQIRAGITSTEALKQLAVRTGLED 242
Query: 251 VRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVL 310
++ L QS R+GTS+ D+LR+ E R R AE+ A +G KL P+I P
Sbjct: 243 IQGLVSLLAQSIRFGTSVADTLRIYADEFRDRRTQAAEEMGAKIGTKLIFPLIFCLWPSF 302
Query: 311 ILVIIGPAILSIIDTMKD 328
LV IGPA++ + +
Sbjct: 303 FLVAIGPAMIGVFRAFGN 320
>gi|322419939|ref|YP_004199162.1| Type II secretion system F domain-containing protein [Geobacter sp.
M18]
gi|320126326|gb|ADW13886.1| Type II secretion system F domain protein [Geobacter sp. M18]
Length = 303
Score = 199 bits (507), Expect = 4e-49, Method: Composition-based stats.
Identities = 74/314 (23%), Positives = 141/314 (44%), Gaps = 18/314 (5%)
Query: 15 AVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRT 74
A+ T +I L A + P + R +++ + + ++ + L
Sbjct: 4 AITATVFFAIVLLTCAALYPYM-------------SRRSVVQSRLVKLEVQEVSKVELVP 50
Query: 75 RDSKSLRNFVKKLNLKAILVDE--NIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGI 132
K + + E + L AAG++ + S+ + ++++ G
Sbjct: 51 EAPKWYDQLSEIGKSLSFSSKEQGKYMKMLVAAGYK-KESVFVFFGCKILLACGLP--GF 107
Query: 133 IWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLI 192
+F + + +++ +G+ APS W+ + +RQ I PD LDL+ +
Sbjct: 108 YLLFYVMSKGFTMNRQLILGALILAILGYLAPSYWLYHQYNERQLKIFHTLPDILDLITV 167
Query: 193 CVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVR 252
CV++G+S+D AL + E + PL++E+ + E R + ++ RT +D VR
Sbjct: 168 CVDAGLSMDAALIKTTETPQFANDPLAKEIKIATMETRAGKPRIESLKDMAERTMVDDVR 227
Query: 253 NATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLIL 312
L Q++R+GTS+ +L V R++R AE+ AA K+ P+I+F P L++
Sbjct: 228 AFVTMLSQTERFGTSLSQALSVHAESLRTKRRQMAEEAAAKTTIKMVFPLILFIFPALLV 287
Query: 313 VIIGPAILSIIDTM 326
VI+GPA + I +
Sbjct: 288 VILGPAYVQISRVL 301
>gi|13471027|ref|NP_102596.1| integral membrane protein [Mesorhizobium loti MAFF303099]
gi|14021771|dbj|BAB48382.1| probable integral membrane protein [Mesorhizobium loti MAFF303099]
Length = 305
Score = 199 bits (507), Expect = 5e-49, Method: Composition-based stats.
Identities = 68/315 (21%), Positives = 149/315 (47%), Gaps = 12/315 (3%)
Query: 11 ATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASS 70
+ + + +V++ + +V ++++R+K + + ++
Sbjct: 2 PVAILLLVLGSVAVA---WPMVAAKGDRNDVKRRLKV-----DHGAMAAKPEPPQKKNAN 53
Query: 71 RLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLIL 130
+R R K + F K + + + + KL AG+ ++ ++R ++ +
Sbjct: 54 VVRERAVKRAQEFYAKSDPENV---ARLRMKLIQAGYMEPRAVGTFFIIRF-SALVGGAI 109
Query: 131 GIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLL 190
G + + E R VIL G G+ P + ++ V+++ + +PD +DL+
Sbjct: 110 GAFVLNQWLASAEATMTSRWAFVILSGVAGYFLPGLVLTQQVREKMREYRNGFPDFMDLM 169
Query: 191 LICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDC 250
++C ++G+S++ + RV++++ LS+ + L EL + A + +R +D
Sbjct: 170 IVCSDAGMSMEAGIERVSKELAKTYPALSQNLQLVSLELRAGRSLDDALKALADRLSLDE 229
Query: 251 VRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVL 310
VR+ L QS GTS+ +LRV E R +R+ AE+KA +L K+++P+ + LPV+
Sbjct: 230 VRSFATLLQQSKELGTSLSGALRVFSDEMRHKRMSLAEEKAHALPAKMSIPVTVCILPVV 289
Query: 311 ILVIIGPAILSIIDT 325
+++ I P I+ + +
Sbjct: 290 LMIAIIPIIVKMTGS 304
>gi|116623251|ref|YP_825407.1| type II secretion system protein [Candidatus Solibacter usitatus
Ellin6076]
gi|116226413|gb|ABJ85122.1| type II secretion system protein [Candidatus Solibacter usitatus
Ellin6076]
Length = 304
Score = 199 bits (506), Expect = 5e-49, Method: Composition-based stats.
Identities = 73/274 (26%), Positives = 123/274 (44%), Gaps = 7/274 (2%)
Query: 56 RKQQITSLQKDSASSRLRTRDSKSLRNFVKKLN---LKAILVDENIVNKLRAAGFRSEYS 112
R + +T L + ++R+R V ++ + +L AGFR +
Sbjct: 28 RVRGVTRLAPAAGTARVRVSPGALWGRLVSRIGTALPTPARELPRLKRQLVRAGFRGPGA 87
Query: 113 LNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLV 172
+RLV + ++ + + F + G+ AP ++ V
Sbjct: 88 ARHFQGIRLVATLGCGAGALLGASQWHAASDNVFWSAAAGIAF----GYLAPMQYVQFCV 143
Query: 173 QKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFL 232
+R+ +I+R P+ LDL+++CVESG+ IDQ +VA+++ + E + EL
Sbjct: 144 GRRRKAIERGLPNTLDLMVVCVESGLGIDQTTLQVAKELHWAHPEICAEFTVMNLELRAG 203
Query: 233 PNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAA 292
R A N RT +D V+ L+Q+DR+GTSI SLR R+ AE++A+
Sbjct: 204 IRRAEALHNLAERTGVDDVKKLVAVLVQTDRFGTSIAQSLRGHAEYLRTMARQRAEERAS 263
Query: 293 SLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
L KL P+ LP L +V IGP I ++ +
Sbjct: 264 KLAVKLVFPIFFCVLPSLFVVTIGPVITRLVREL 297
>gi|153006801|ref|YP_001381126.1| type II secretion system protein [Anaeromyxobacter sp. Fw109-5]
gi|152030374|gb|ABS28142.1| type II secretion system protein [Anaeromyxobacter sp. Fw109-5]
Length = 314
Score = 198 bits (505), Expect = 7e-49, Method: Composition-based stats.
Identities = 86/318 (27%), Positives = 148/318 (46%), Gaps = 14/318 (4%)
Query: 9 FDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSA 68
DA LA+ +++ S+ A + +R++ + + + + ++A
Sbjct: 3 LDALTLAMGGLVVLAVASIGAAARSFRAAADPAVRRLREGSDPHSVPLAAVVAGERLEAA 62
Query: 69 SSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFL 128
+ R + + + + +L AGFRS + + + + V+ L
Sbjct: 63 THEASRRGAATTDE----------DAESRLRRQLVWAGFRSMRAPKLFVGAKAVLSFGLL 112
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
+ + P +G + + GF P++W+S+ + R I RA PDALD
Sbjct: 113 LG----FLAVNAARAEPVPFALGIAVWLAGAGFFLPNLWLSSRIANRLRQIDRALPDALD 168
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
LL+ CVE+G+ +D AL+RV+ +I LS E+ LT E+ R F RT
Sbjct: 169 LLVTCVEAGLGLDAALQRVSGEIALAWPLLSSELRLTFLEVRAGIPRMDGFRRLAARTGS 228
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP 308
+R L Q++ +GTSI +LRV R R+ AE++AA + K+T+P+I+ LP
Sbjct: 229 PELRALAATLTQTELFGTSIASALRVQAEGIRIRRMQRAEERAAYVAVKMTLPLILCILP 288
Query: 309 VLILVIIGPAILSIIDTM 326
L VIIGPA ++I+ T+
Sbjct: 289 SLFAVIIGPAAINIMKTL 306
>gi|221067370|ref|ZP_03543475.1| type II secretion system protein [Comamonas testosteroni KF-1]
gi|220712393|gb|EED67761.1| type II secretion system protein [Comamonas testosteroni KF-1]
Length = 303
Score = 198 bits (505), Expect = 7e-49, Method: Composition-based stats.
Identities = 73/270 (27%), Positives = 137/270 (50%), Gaps = 3/270 (1%)
Query: 57 KQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNIL 116
+Q++ L S K + F + A + + AG R E + +
Sbjct: 29 EQRLQELSPAPLSGSWTETAVKLVGPFAHLSSPTAGSDATPLRLRFLNAGIRHENAPLLY 88
Query: 117 LVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQ 176
+ ++P++ + L ++ + QL + ++ G V P++ + + +R+
Sbjct: 89 FGAKTLLPLVMMFL--VYSLMLAQGTTDSLQLLLYP-LVTGLVACYLPNLVLRWMAARRK 145
Query: 177 SSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQ 236
I +PDA DL+L+CVE+G+ +D AL +V +I +S L++E+ T E+ R+
Sbjct: 146 REIFENFPDAADLMLVCVEAGMGLDAALGKVTAEIRIKSEALAQELHWTNLEMRAGSTRE 205
Query: 237 VAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGP 296
+ N RT +D + T L Q+DR+GTSIGDS+RV + R +R M AE+ AA +
Sbjct: 206 KSLRNLAARTGVDEIHAFTAMLTQADRFGTSIGDSIRVFSDDLRHKRQMRAEELAAKIPT 265
Query: 297 KLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
K+ +P++ P +++V++GPAI+ ++ +
Sbjct: 266 KMLLPLVTCIFPAIVMVVLGPAIIRLLRMV 295
>gi|134299964|ref|YP_001113460.1| type II secretion system protein [Desulfotomaculum reducens MI-1]
gi|134052664|gb|ABO50635.1| type II secretion system protein [Desulfotomaculum reducens MI-1]
Length = 310
Score = 198 bits (504), Expect = 8e-49, Method: Composition-based stats.
Identities = 70/323 (21%), Positives = 142/323 (43%), Gaps = 15/323 (4%)
Query: 8 LFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREIL--RKQQITSLQK 65
+ + +L V + F+ + + ++ +RM V + R+ +++
Sbjct: 1 MENLLQLIVGMIFFAVTFATLVLYRLVFGERIQVAQRMDQVVGSPAPIPVRELELSVPLY 60
Query: 66 DSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPI 125
A + ++ L F+ ++ + K+ AG +VV+ + +
Sbjct: 61 QRAIHPALSTMARWLTRFIPSAR------EKELQKKIIYAGNPGHLDAKEWVVVKYLGAV 114
Query: 126 IFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPD 185
W K L L V L G+ P +++++ ++ R++ ++++ PD
Sbjct: 115 GLGFFFWSWAGMAGKALPQCLLLGATGVPL----GWLLPDLYLNSRIRNRKTQVEKSLPD 170
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
ALDLL + VE+G+ D AL +VAE G +++E +L + E R+ A + R
Sbjct: 171 ALDLLTVSVEAGLGFDGALMKVAEKTKGI---MADEFILMLQECHMGKPRREALRDMATR 227
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
+D + + ++I +D G SIG+ LR + R +R + E+ A K+ PM+ F
Sbjct: 228 LDVDDLSSFCGSIILADTLGISIGNVLRTQSQQMRQKRRQKTEELAMKAPIKMLFPMVFF 287
Query: 306 FLPVLILVIIGPAILSIIDTMKD 328
P + ++++GPA L I+ +
Sbjct: 288 IFPAIFVILLGPAALQIMKAFAN 310
>gi|307294432|ref|ZP_07574276.1| Type II secretion system F domain protein [Sphingobium
chlorophenolicum L-1]
gi|306880583|gb|EFN11800.1| Type II secretion system F domain protein [Sphingobium
chlorophenolicum L-1]
Length = 322
Score = 198 bits (504), Expect = 8e-49, Method: Composition-based stats.
Identities = 76/313 (24%), Positives = 144/313 (46%), Gaps = 16/313 (5%)
Query: 16 VAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTR 75
+ ++I +L++ + + + + R+ V + + R
Sbjct: 14 ILGLLFIAIVALVFGLSEIVMRNARVRSRLDIVGD----------AGGAAQGSQTLRGER 63
Query: 76 DSKSLRNFVKKLNLKAIL----VDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILG 131
+ + V ++ I + + +L AAG+ S + + RLV+
Sbjct: 64 NDGEWKKLVDRIEKMGISLVDTNNAGLRRRLIAAGYMSPEAPKLFTFFRLVLTFALP--A 121
Query: 132 IIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLL 191
I + K L+ +G P+++IS +RQ +I +PDALDL+L
Sbjct: 122 IFVVMALSKAEPPSALKLYFIASLLAVLGLYLPNLFISAKAARRQEAIVHGFPDALDLML 181
Query: 192 ICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCV 251
+CVE+G+ ++ A+ RV ++ +S + + EL +RQ A + +D +
Sbjct: 182 VCVEAGLGLEAAMDRVGRELALSHPLVSAALGKVVLELRAGRSRQDALRRMADDVDVDEI 241
Query: 252 RNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLI 311
R+ LIQSD+ G+S+G +LR+ +E R +R M AE+KA L L+VP++ LPV+I
Sbjct: 242 RSFATLLIQSDQLGSSVGQTLRIYAAEMREKRRMRAEEKAHRLPVLLSVPLVACMLPVMI 301
Query: 312 LVIIGPAILSIID 324
V++ PA++ ++
Sbjct: 302 GVLMLPAVVRVVR 314
>gi|225181994|ref|ZP_03735426.1| type II secretion system protein [Dethiobacter alkaliphilus AHT 1]
gi|225167279|gb|EEG76098.1| type II secretion system protein [Dethiobacter alkaliphilus AHT 1]
Length = 305
Score = 198 bits (504), Expect = 1e-48, Method: Composition-based stats.
Identities = 80/317 (25%), Positives = 161/317 (50%), Gaps = 18/317 (5%)
Query: 13 ELAVAITTAVSIFSLIYAVVIPSL-GSGELEKRMKSVAVEREI--LRKQQITSLQKDSAS 69
+ +A+ +++ + I A+ +L+ R+K+V E +R+ +++ +
Sbjct: 2 QAIIALLVFLTLVTFITALQNKLQPAKVDLQGRLKNVINYDETADIRQAELSRPLSERIC 61
Query: 70 SRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLI 129
S L L +L IL + + K++ AG +S L +++V F +
Sbjct: 62 SPL----LGVLSALASRLLPADIL--KGLERKVQQAGMTGGFSAKDYLGMKVV--FAFGL 113
Query: 130 LGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDL 189
++ L F + V + G +G+ P + + N + R++SI++++PD LDL
Sbjct: 114 PFFFYLLFGRDLSPQTFLI----VAIAGVLGWRLPEMKLENTARSRKASIEKSFPDTLDL 169
Query: 190 LLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMD 249
L + V +G+ D AL +V E G P++EE + E+ R+ A +F RT +D
Sbjct: 170 LTVSVGAGLGFDGALAKVVEKSEG---PVAEEFRRVLQEIKMGKARREALRDFGERTGID 226
Query: 250 CVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPV 309
V++ T A++Q+D+ G +IG +L+V + R +R E++A + K+ +P++ F P
Sbjct: 227 DVKSFTGAIVQADQLGLNIGKTLKVQSEQMRRKRRQRVEEQAMKVPVKMLLPLVAFIFPT 286
Query: 310 LILVIIGPAILSIIDTM 326
+ +V++GPA++ I++T+
Sbjct: 287 IFIVLLGPAMIQIVETL 303
>gi|323700365|ref|ZP_08112277.1| Type II secretion system F domain [Desulfovibrio sp. ND132]
gi|323460297|gb|EGB16162.1| Type II secretion system F domain [Desulfovibrio desulfuricans
ND132]
Length = 318
Score = 197 bits (502), Expect = 2e-48, Method: Composition-based stats.
Identities = 80/309 (25%), Positives = 144/309 (46%), Gaps = 6/309 (1%)
Query: 22 VSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLR 81
V +F+ V L L + + ++ + T++++ A + KS+
Sbjct: 6 VPLFAAGIGFVSVLLAGYGLLGYLSGASDSAKLKERVSGTTVKRSDALTAPLGNAVKSVV 65
Query: 82 NFVKKLNLKAILVD----ENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFG 137
+F +L K + + +L AG R S I ++ + + ++ F
Sbjct: 66 DFFGRLGTKIGPTETEEIDKGRLRLIQAGMRKPDSYKIFQGLKGFLAVGLAGGFLLVRFL 125
Query: 138 YDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESG 197
+ + + + + + VG P W+S + +R+ ++ PDALDLL++CVESG
Sbjct: 126 F--IEDMSIAMTAFGTVTLAAVGVYGPEYWLSKKINRRKLAVGDELPDALDLLVVCVESG 183
Query: 198 ISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQA 257
+ +DQA+ RV +++ +S E L EL R A + R +D + + T
Sbjct: 184 MGLDQAVDRVCQEMKNSGPIISSEFKLLTLELRAGKARIDALRSLAERVGLDDLNSLTSL 243
Query: 258 LIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGP 317
LIQ+D +G S+G +LRV R +R AE+KAA + L +P++ F LP L + I+GP
Sbjct: 244 LIQADAFGISVGRTLRVYSDAMRVKRSQRAEEKAAKMPVLLLLPLVAFILPTLFVAILGP 303
Query: 318 AILSIIDTM 326
A++ +D
Sbjct: 304 AVIMSMDMF 312
>gi|187919329|ref|YP_001888360.1| type II secretion system protein [Burkholderia phytofirmans PsJN]
gi|187717767|gb|ACD18990.1| type II secretion system protein [Burkholderia phytofirmans PsJN]
Length = 318
Score = 197 bits (502), Expect = 2e-48, Method: Composition-based stats.
Identities = 80/316 (25%), Positives = 154/316 (48%), Gaps = 12/316 (3%)
Query: 13 ELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRL 72
++ + + +F + L +++R++ + Q + + D+ + +
Sbjct: 5 QIVLLGVMFLIVFGAALK-AMALLRPDPVQRRIEEIG--------QPGVAAEADTGAQKN 55
Query: 73 RTRDSKSLRNFVKKLNLKAILVDEN-IVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILG 131
+ V +L+L D++ + + AG R+ + + V+ V+ + +
Sbjct: 56 WVETVTKMSERVARLSLPKEDWDKSVLRLRFANAGIRTPSAAAVYFAVKTVLALALPAIA 115
Query: 132 IIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLL 191
+I + + V+ +GF P+V + LV+ RQ + PDALDL+
Sbjct: 116 LIVF--GNAFQAGERIYLLLTVLAASALGFYLPNVVMRRLVESRQRKLFEDLPDALDLMT 173
Query: 192 ICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCV 251
+CVE+G+ +D A+ RV ++IG +S L +E + + EL R+ A N RT ++ +
Sbjct: 174 VCVEAGLGLDAAMLRVTQEIGVKSHALKDEFDMVLLELRAGSGREKALRNLSLRTGVEDI 233
Query: 252 RNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLI 311
LIQ+DR+GTS+GDSLRV R++R + AE++AA + KL P++ F P L+
Sbjct: 234 DTLAAMLIQADRFGTSVGDSLRVYTDNLRTKRRLRAEEQAAKIALKLLFPLMFFIFPTLL 293
Query: 312 LVIIGPAILSIIDTMK 327
V++GP+ + I+ +
Sbjct: 294 AVLVGPSAIQIVRQLS 309
>gi|51245380|ref|YP_065264.1| hypothetical protein DP1528 [Desulfotalea psychrophila LSv54]
gi|50876417|emb|CAG36257.1| hypothetical membrane protein [Desulfotalea psychrophila LSv54]
Length = 283
Score = 197 bits (501), Expect = 2e-48, Method: Composition-based stats.
Identities = 72/225 (32%), Positives = 116/225 (51%), Gaps = 5/225 (2%)
Query: 103 RAAGFRSEYSLNILLVVR-LVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGF 161
+ AG SL ++R ++ + L+L I + G+ E + I G G+
Sbjct: 60 QRAGIYDSTSLRSYQLLRYFLLVLPLLLLTISHVVGFRTFTER----LLAFAIFAGIFGY 115
Query: 162 CAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEE 221
P + R+ + R +PDA+DLL++CVE+G+ ID A+RRVA++I S L++E
Sbjct: 116 FLPVFRLKIRGHYRRKELDRTFPDAIDLLMVCVEAGMGIDSAIRRVAQEIHITSPELAKE 175
Query: 222 MLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRS 281
+ EL R +N RT + + N LIQ+ +YGT + ++LR+ E R
Sbjct: 176 FKILSLELKTGKPRNECLKNLAKRTNLRDIDNLVSLLIQAQKYGTGVANALRIHAEEMRQ 235
Query: 282 ERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
+R E+ AA L KL +P+I F P L LVI+GPA++ + +
Sbjct: 236 KRYSRLEEMAAKLPVKLVIPLIFFIFPALFLVILGPAMIRVFRVI 280
>gi|308050051|ref|YP_003913617.1| Type II secretion system F domain protein [Ferrimonas balearica DSM
9799]
gi|307632241|gb|ADN76543.1| Type II secretion system F domain protein [Ferrimonas balearica DSM
9799]
Length = 321
Score = 196 bits (499), Expect = 4e-48, Method: Composition-based stats.
Identities = 81/323 (25%), Positives = 150/323 (46%), Gaps = 19/323 (5%)
Query: 7 DLFDATELAVAITTAVSIFS-LIYAVVIPSLGSG---ELEKRMKSVAVEREILRKQQITS 62
++ + +L+ + A++ + ++ A+ + L SG R+K L+ + S
Sbjct: 10 EVLNDRQLSTYLFYAIAAAAGVMLALALSFLFSGLYSPTRMRLK-------ELKTGAVAS 62
Query: 63 LQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLV 122
+ L + + L + + +L AGF S +L I +RL+
Sbjct: 63 GSGANFDDALEHEN-----RVREGLVKHLSVDNSGSRKRLIHAGFHSNSALAIYNGLRLL 117
Query: 123 VPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRA 182
++ ++ II I ++ +++ ++++ + PS + R I+
Sbjct: 118 FLLLMAMVSIIAI---PMMVGLSTFMQIYIIVMLMGLAILTPSFILDRFAASRMRKIRNG 174
Query: 183 WPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENF 242
+PDALDLL++C ESG + AL+RV+ ++ L+EE+LL + A F
Sbjct: 175 FPDALDLLVVCCESGQGLLAALQRVSVELRVSHKELAEELLLVCQKNRAGIELSTALHEF 234
Query: 243 YNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPM 302
RT +D +R A+ QS R GT I ++LRV E R +R+ AE+ AA LG K+ PM
Sbjct: 235 SERTGLDDIRGLNGAITQSLRLGTGIAETLRVYADEYRDKRMQAAEEMAAKLGVKIIFPM 294
Query: 303 IIFFLPVLILVIIGPAILSIIDT 325
+ P +V +GPA++ +++
Sbjct: 295 LTCIWPSFFIVAVGPAVIKVMEV 317
>gi|114800177|ref|YP_759874.1| putative Flp pilus assembly protein TadC [Hyphomonas neptunium ATCC
15444]
gi|114740351|gb|ABI78476.1| putative Flp pilus assembly protein TadC [Hyphomonas neptunium ATCC
15444]
Length = 310
Score = 195 bits (496), Expect = 7e-48, Method: Composition-based stats.
Identities = 79/320 (24%), Positives = 154/320 (48%), Gaps = 13/320 (4%)
Query: 8 LFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDS 67
L + + + +++ + ++ L R + +ER + R+ + +
Sbjct: 4 LLSSGPVIPFVLGFLALLLAVPGLISF------LRSRQDAGDIERRLSRRPGTGAAEAKR 57
Query: 68 ASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIF 127
+ S+L K++ KL AGF ++ + R + +
Sbjct: 58 SESKL----GKAVMGIADNAAPTDGAEVSAARAKLNQAGFTGAKAVPRYFLARFICVV-- 111
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
I + F L EYP + V A I++ G AP ++ + +R+ + +PD +
Sbjct: 112 -IPQVALFFALPYLQEYPRYVPVMASIILVLAGLAAPGKFLDMRISQRKQACSSGFPDMM 170
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQ 247
DL++ CVE+G+S+D +++RV E++ + ++ M EL +R++A+ F R
Sbjct: 171 DLMVACVEAGLSLDASVQRVGEELELRHPIIAGHMRTLSLELRAGKSRKMAWRAFAERLG 230
Query: 248 MDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFL 307
+D + L Q++ GTS+G +LRV ++ R R++ AE+KA +L K+T+P+IIF
Sbjct: 231 IDEAGSLATMLRQAEEMGTSLGQTLRVFSADMRQRRILMAEEKAMALPAKMTLPLIIFVF 290
Query: 308 PVLILVIIGPAILSIIDTMK 327
PVL+ V+I PA++ ++ T+
Sbjct: 291 PVLLGVLILPAVVMLMTTLG 310
>gi|197118215|ref|YP_002138642.1| Flp pilus assembly protein [Geobacter bemidjiensis Bem]
gi|197087575|gb|ACH38846.1| Flp pilus assembly protein, putative [Geobacter bemidjiensis Bem]
Length = 304
Score = 195 bits (495), Expect = 9e-48, Method: Composition-based stats.
Identities = 75/317 (23%), Positives = 145/317 (45%), Gaps = 16/317 (5%)
Query: 15 AVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRT 74
+A+ TA SIF+ + ++ L L R +SV R++ + + +
Sbjct: 1 MLALITA-SIFASVTVLIGVLLY--PLLSRQESV-------RQRLTKLMPQQEEEAPPLV 50
Query: 75 RDSKSLRNFVKKLNLKAILVDENIV---NKLRAAGFRSEYSLNILLVVRLVVPIIFLILG 131
+ + +L +K + ++ + AAGF+ + ++ + L +L + + G
Sbjct: 51 PTPTKWQRTLSELGIKQQIRPADLRTYREAVTAAGFK-KEAVYVFLGAKLFLAFLLPA-G 108
Query: 132 IIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLL 191
+ +F + + + G+ P++W+ R+++I A PD LDLL
Sbjct: 109 YLMLFALPR-GTMASSISILVATACAVAGYLLPTIWLDRRAGVRKTAIFHALPDVLDLLT 167
Query: 192 ICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCV 251
+CVE+G+ +D A+ + AE+ ++ PL E I E+ R A + RT +D +
Sbjct: 168 VCVEAGLGLDAAIIKTAENFQEKNCPLIAEFNAVILEIRAGRPRSEALKGLAERTTLDDI 227
Query: 252 RNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLI 311
+ LIQ+++ GTS+G +LR+ R++R AE++AA K+ P+ P +
Sbjct: 228 KALVSMLIQTEKLGTSLGKTLRIYSDSLRTKRKQLAEERAAKTAVKMLFPLTFCVFPAFM 287
Query: 312 LVIIGPAILSIIDTMKD 328
+V++ PA I K
Sbjct: 288 VVLLVPAFFRIFQMFKH 304
>gi|303241709|ref|ZP_07328206.1| Type II secretion system F domain protein [Acetivibrio
cellulolyticus CD2]
gi|302590710|gb|EFL60461.1| Type II secretion system F domain protein [Acetivibrio
cellulolyticus CD2]
Length = 306
Score = 195 bits (495), Expect = 1e-47, Method: Composition-based stats.
Identities = 69/319 (21%), Positives = 144/319 (45%), Gaps = 22/319 (6%)
Query: 14 LAVAITTAVSIFS-LIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASS-- 70
+ + ++ I S I+ + K V++ + + K+ + +L+ +
Sbjct: 2 IIYLLLASIFISSYFIFYAFVGVFYRNR-----KVVSIRLDRITKEDVKTLENELNQPLF 56
Query: 71 -RLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLI 129
R+ + + ++ K K+ AG S+ + +++++ +I
Sbjct: 57 VRVIRPILDDISKVILRITPKEF--KSAFEKKVVNAGNPFNLSMKDWINMQVIIVVILPF 114
Query: 130 L--GIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
+ G+ + G D + V I+ G P++ ++ + +RQ I + PD L
Sbjct: 115 ITSGVCYYLGLD------VRSIVFVGIIEICFGLLFPNLVLNKQIAQRQKKILNSLPDVL 168
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQ 247
DLL + VE+G+ D AL +V + + G P++ E + E+ ++ A ++ R
Sbjct: 169 DLLTVSVEAGLGFDGALAKVIDKMPG---PIAIEFENVLQEMKVGKQKRDALKDMAERVG 225
Query: 248 MDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFL 307
+ + ++IQ+D+ G SIG+ LR+ + R +R A++KA K+ +PM++F
Sbjct: 226 LHDLTTFVGSIIQADQLGVSIGNVLRIQSEQMREKRRQRAKEKAMKAPVKMLIPMVLFIF 285
Query: 308 PVLILVIIGPAILSIIDTM 326
P + V+IGP I+ +I T
Sbjct: 286 PTIFSVLIGPVIIKVIYTF 304
>gi|302391033|ref|YP_003826853.1| type II secretion system F domain protein [Acetohalobium arabaticum
DSM 5501]
gi|302203110|gb|ADL11788.1| Type II secretion system F domain protein [Acetohalobium arabaticum
DSM 5501]
Length = 306
Score = 195 bits (495), Expect = 1e-47, Method: Composition-based stats.
Identities = 77/311 (24%), Positives = 147/311 (47%), Gaps = 8/311 (2%)
Query: 16 VAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTR 75
+ + AV I +V+ S KR+++ + L+++ + ++ S R
Sbjct: 1 MLLIAAVFIAVAGLTLVVGYYLSQP-SKRVQNRLQKYAQLQREVLPRREELELSFWERVI 59
Query: 76 DSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWI 135
+ V + L + V ++I +L AG + L ++ + + + I
Sbjct: 60 RPGLQKMAVLFVKLTPLGVKDSIRKRLILAGRPFDLEAKEFLALQGNLMAVLPGI----I 115
Query: 136 FGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVE 195
G + + ++ G+ GF P +S + +RQ +++A PD LDLL + VE
Sbjct: 116 LGGLMIAGVSLNTALMYSLIFGFAGFVIPRFLLSKKISERQKKMQQALPDVLDLLTVSVE 175
Query: 196 SGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNAT 255
+G+ D AL RV + I G P+SEE + E+ R+ A + RT ++ + N
Sbjct: 176 AGLGFDSALVRVVDKIAG---PISEEFERLLQEIRMGKPRRDAMRDLGERTNVEDLTNFI 232
Query: 256 QALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVII 315
A++Q+D+ G SIG LRV + R +R AE +A K+ +P++ F P L ++++
Sbjct: 233 TAIVQADKLGVSIGKVLRVQSKQIRQKRRQRAEAQAMKAPIKMLLPLVFFIFPTLFIILL 292
Query: 316 GPAILSIIDTM 326
GPA + +++++
Sbjct: 293 GPAAIKVMNSL 303
>gi|167584966|ref|ZP_02377354.1| type II secretion system protein [Burkholderia ubonensis Bu]
Length = 324
Score = 194 bits (494), Expect = 1e-47, Method: Composition-based stats.
Identities = 80/319 (25%), Positives = 152/319 (47%), Gaps = 9/319 (2%)
Query: 9 FDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSA 68
+ ++ + ++F+ ++ + +++R++ L
Sbjct: 4 LNLMQILMLGGLFAAVFAGALVALLVFVPRN-MQRRLQQAGGGTVTL-----GDGAATGG 57
Query: 69 SSRLRTRDSKSLRNFVKKLN-LKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIF 127
+ + + KL+ K D + +L AG+R+ + ++ + ++ I
Sbjct: 58 FASEWVAKFAEMSKPISKLSVPKEGWEDSPLRVRLMNAGWRTPNAASVYFGAKTLLAIAL 117
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
++ L ++++G +G+ P+V +S + RQ I +PDAL
Sbjct: 118 P--AVLLPALITTRLAESRYTLSMILVVLGAIGYYLPNVVLSRRIASRQRVIFEDFPDAL 175
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQ 247
DLL +CVE+G+S+D AL +V E++ +S ++ E+ L + E+ ++ A N RT
Sbjct: 176 DLLTVCVEAGLSLDSALLKVCEELQFRSPIVASELDLMLLEMRSGFTKEAALRNLALRTG 235
Query: 248 MDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFL 307
++ + + LIQ+DR+GTSIGDSLRVL R+ R M AE++AA + KL P+I
Sbjct: 236 VEDIESFCAMLIQADRFGTSIGDSLRVLSDMLRTRRRMRAEERAAKIALKLLFPLIFCIF 295
Query: 308 PVLILVIIGPAILSIIDTM 326
P L+ V++GPA + I +
Sbjct: 296 PALLTVLLGPAFIHIYRIL 314
>gi|220918108|ref|YP_002493412.1| type II secretion system protein [Anaeromyxobacter dehalogenans
2CP-1]
gi|219955962|gb|ACL66346.1| type II secretion system protein [Anaeromyxobacter dehalogenans
2CP-1]
Length = 319
Score = 194 bits (494), Expect = 1e-47, Method: Composition-based stats.
Identities = 70/245 (28%), Positives = 132/245 (53%), Gaps = 4/245 (1%)
Query: 82 NFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKL 141
+ + + + +L GFR +++++ L ++L + + L+ + +
Sbjct: 72 DVLTRFARPMGDEAARLQLRLEQGGFRGPHAVSVHLALKLTLAVGLLLTFLFVNAHRAER 131
Query: 142 LEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISID 201
+E F + +L GF P + +++ + RQ +++R PDALDLL+ CVE+G+ +D
Sbjct: 132 IEPAFVV----AVLAFAAGFYLPDLLLTSRISSRQLTLERGLPDALDLLVTCVEAGLGLD 187
Query: 202 QALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQS 261
+++RV+E+I L+ E+ T E+ R AF RT + +++ + L Q+
Sbjct: 188 ASVQRVSEEIHRAWPQLATELRTTFLEVKAGIPRIEAFRRLATRTGVKDLKSLSATLAQT 247
Query: 262 DRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILS 321
+ +GTS+ +LRV R R+ AE+KAA + K+T+P+I+ LP L+ VI+GPAI+
Sbjct: 248 EIFGTSVALALRVQSDGMRVRRMHRAEEKAAYVSVKMTLPLILCILPSLLAVIMGPAIIG 307
Query: 322 IIDTM 326
I+ +
Sbjct: 308 IMRAL 312
>gi|317123667|ref|YP_004097779.1| type II secretion system F domain [Intrasporangium calvum DSM
43043]
gi|315587755|gb|ADU47052.1| Type II secretion system F domain [Intrasporangium calvum DSM
43043]
Length = 306
Score = 194 bits (493), Expect = 2e-47, Method: Composition-based stats.
Identities = 80/308 (25%), Positives = 142/308 (46%), Gaps = 17/308 (5%)
Query: 19 TTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSK 78
AV++F L+ A+ S GSG KS+A+ ++ ++ + D A RL
Sbjct: 10 LIAVAVFGLVLAL---SFGSGGPTGVAKSLAMIEGVVTQRSAVKTELD-AKDRLVEPIFN 65
Query: 79 SLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGY 138
+ L+ + + + L AG S ++ ++ + V +I L+LG+ +
Sbjct: 66 RAQRIATVLSPQG--TSDRLARGLERAGNPSPWTAERVMGAKGVALLIGLLLGVAYGGFS 123
Query: 139 DKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGI 198
+ + + G F P++ + N +RQ + +ALD+L +CVE+G
Sbjct: 124 LRGFVF--------ALGFGGAAFWLPNLLVYNAALRRQEQVATGLAEALDMLTVCVEAGQ 175
Query: 199 SIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQAL 258
D AL +VA G P+S E ++E+ +R AF +R + V+N A+
Sbjct: 176 GFDAALVQVARSTDG---PISGEFARVLSEVQIGKSRSEAFAGLGDRVSLSDVKNFVSAI 232
Query: 259 IQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPA 318
IQ+D+ G I LR + R R AE+KA + K+ P+++ P + +VI+GP
Sbjct: 233 IQADKLGIPIASVLREQTAAMRLSRRQRAEEKAQKVTVKILFPLLLCIFPAMFVVILGPG 292
Query: 319 ILSIIDTM 326
I+ +I T+
Sbjct: 293 IIRMITTL 300
>gi|269926132|ref|YP_003322755.1| von Willebrand factor type A; type II secretion system protein
[Thermobaculum terrenum ATCC BAA-798]
gi|269789792|gb|ACZ41933.1| von Willebrand factor type A; type II secretion system protein
[Thermobaculum terrenum ATCC BAA-798]
Length = 643
Score = 194 bits (493), Expect = 2e-47, Method: Composition-based stats.
Identities = 68/311 (21%), Positives = 139/311 (44%), Gaps = 18/311 (5%)
Query: 18 ITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDS 77
I A + L+Y +V+ +++R+K + E +++ +K ++ L
Sbjct: 348 IIAASGVLFLVYGLVLAQ-RPSPIQRRLKKLLHEEHQDTPPEVSVTKKKTSIVDLIKPLV 406
Query: 78 KSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFG 137
+ V + IV+KL AA + L + ++++ +
Sbjct: 407 PLVSVTVVRWIPGKW--QRFIVDKLIAAAYPHGIRLAHFITIQVL------------LGL 452
Query: 138 YDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESG 197
+L + +++ G P W+S + +R+ I PDALDLL I VE+G
Sbjct: 453 TGLVLGLLLTHNLILGLVLLAAGVYLPLFWLSREITQRRRRILLQMPDALDLLTISVEAG 512
Query: 198 ISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQA 257
+ D A+ + + ++ E L ++E+ +R+ A + R Q+D ++ +
Sbjct: 513 LGFDAAMLEIVQKWDN---DIAREFALVLSEMKLGKSRRDALRSMAERVQLDEMKLLVSS 569
Query: 258 LIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGP 317
++Q+D G SIG +L + + R R AE+ K+ +PM++F P + +V++GP
Sbjct: 570 IVQADEIGASIGRTLSIQSEQMRLRRRQRAEELGHKAVIKIIIPMVLFIFPAVFVVLLGP 629
Query: 318 AILSIIDTMKD 328
AI +I++ + +
Sbjct: 630 AIPTILNALGN 640
>gi|302343414|ref|YP_003807943.1| Type II secretion system F domain protein [Desulfarculus baarsii
DSM 2075]
gi|301640027|gb|ADK85349.1| Type II secretion system F domain protein [Desulfarculus baarsii
DSM 2075]
Length = 305
Score = 193 bits (492), Expect = 2e-47, Method: Composition-based stats.
Identities = 78/313 (24%), Positives = 144/313 (46%), Gaps = 15/313 (4%)
Query: 14 LAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLR 73
++++ T +++ +A G +R+ + + + ++
Sbjct: 7 ISISGATGLAVLLAFWACRTLGGGPDPARRRLDEL-----------LARNAPPRPAPAIK 55
Query: 74 TRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGII 133
R +++ K + L AGFRS +LN+ VRL + +
Sbjct: 56 KRLLGAVKALAPKSERGQGWEKSKLRQDLLTAGFRSVEALNVFTGVRLAAAFLLPAI--- 112
Query: 134 WIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLIC 193
+F L++ V + ++ +G+ P + L +R + I R P LDLL+I
Sbjct: 113 -VFALGVLIQAKRPAMVISTLIAAALGYLGPGYVLEKLALRRSALIARQMPSMLDLLVIA 171
Query: 194 VESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRN 253
VESG+ +D A++RV+ D+ S L+ E+ + EL R A N R +D +
Sbjct: 172 VESGLGLDAAVQRVSRDLAASSPVLAHELAIFSLELKLGAARGDALRNLAKRCGVDEMAG 231
Query: 254 ATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILV 313
LIQ+DR+G SIG S+RV + R++R + E++AA + KL P++ P ++ V
Sbjct: 232 LVAMLIQADRFGVSIGRSIRVFADDLRTKRRQKLEEQAAKIPLKLLFPVLFLIFPAIMAV 291
Query: 314 IIGPAILSIIDTM 326
+ GPA+++I++ M
Sbjct: 292 MAGPAVINIVEKM 304
>gi|220913386|ref|YP_002488695.1| type II secretion system protein [Arthrobacter chlorophenolicus A6]
gi|219860264|gb|ACL40606.1| type II secretion system protein [Arthrobacter chlorophenolicus A6]
Length = 291
Score = 193 bits (491), Expect = 3e-47, Method: Composition-based stats.
Identities = 79/313 (25%), Positives = 149/313 (47%), Gaps = 26/313 (8%)
Query: 16 VAITTAVSIFSLIYAVVIPSLGSGELE-KRMKSVAVEREILRKQQITSLQKDSASSRLRT 74
+A+ ++I I +V S +R+K+ R Q +
Sbjct: 4 IALAAILAIVVPISGMVWLSFTGDRAALRRIKANLGGRPSQAAQSLNV------------ 51
Query: 75 RDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIW 134
S+ L F +++ K + + +L AG ++ L +L+V+ ++ ++G +
Sbjct: 52 --SQHLVEFSQRITPKGY--EGWLDKQLSGAGRPKQWPLARILMVKPMLAFGGALIGFML 107
Query: 135 IFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICV 194
G P R +LI +G+ P + + N QKR+ +I+ P+ALD +LI V
Sbjct: 108 FLG------APSAGRFVMAVLIVALGYFVPDLLLRNRAQKRREAIRLELPNALDQMLISV 161
Query: 195 ESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNA 254
++G+ + A+ R E+ G PL+EE++ T+ ++ +R+ A+ R + VR
Sbjct: 162 QAGLGFETAMGRAGENGRG---PLAEELIRTLQDIQVGRSRKEAYLALSERVDVPSVRTF 218
Query: 255 TQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVI 314
+A++Q+D YG +I + L+ + R +R AE+ A + K+ P+I F LP L +V+
Sbjct: 219 VRAVVQADAYGIAIANVLKTQAKDMRIKRRQLAEEHAMKMPVKMLFPLIFFILPTLFIVL 278
Query: 315 IGPAILSIIDTMK 327
+GPA+L I+
Sbjct: 279 LGPAVLQIMSVFS 291
>gi|197123313|ref|YP_002135264.1| type II secretion system protein [Anaeromyxobacter sp. K]
gi|196173162|gb|ACG74135.1| type II secretion system protein [Anaeromyxobacter sp. K]
Length = 306
Score = 192 bits (489), Expect = 5e-47, Method: Composition-based stats.
Identities = 69/265 (26%), Positives = 136/265 (51%), Gaps = 4/265 (1%)
Query: 62 SLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRL 121
+ +A+ + + L+ + + + + +L AG R + + ++
Sbjct: 38 RRLRATAAGAVDGDPALQLQPGLAAVEGDSSEGGSRLRRELVWAGIRRAGAPQGFVAAKM 97
Query: 122 VVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKR 181
+ + + + L P + + LI + F P++W+ + VQ RQ+ + R
Sbjct: 98 ALA----TVALTGFAALNALRTEPVRTGLPMAALITGIAFFLPNLWLRSRVQARQTQLDR 153
Query: 182 AWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFEN 241
+ PDALDLL+ CVE+G+ +D AL+RV++++ LS+E+ L E+ R AF
Sbjct: 154 SLPDALDLLVTCVEAGLGLDSALQRVSDEVALAHPLLSKELRLVFLEVKAGIPRIAAFRR 213
Query: 242 FYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVP 301
RT +R+ + L Q++ +GTS+G +LR+ R R+ AE+KAA + K+++P
Sbjct: 214 MAERTGAPELRSLSATLAQTELFGTSVGAALRIQAEGIRIRRMHRAEEKAAYVSVKMSLP 273
Query: 302 MIIFFLPVLILVIIGPAILSIIDTM 326
+++ LP + V++GPA++++ D +
Sbjct: 274 LVLCILPCVFAVVLGPAVVNMADRL 298
>gi|152994352|ref|YP_001339187.1| type II secretion system protein [Marinomonas sp. MWYL1]
gi|150835276|gb|ABR69252.1| type II secretion system protein [Marinomonas sp. MWYL1]
Length = 316
Score = 192 bits (489), Expect = 5e-47, Method: Composition-based stats.
Identities = 70/320 (21%), Positives = 152/320 (47%), Gaps = 13/320 (4%)
Query: 14 LAVAITTAVSIFSLIYAVVIPSLGSGE--LEKRMKSVAVEREILRKQQITSLQKDSASSR 71
+ + + + + ++ + L R++S + + + + + L ++ +
Sbjct: 5 MMFPVLAGIFLCTTGLVLLGLYFRTKPKTLADRLQSSGIMDKDILQVEAVLLSQNDERRK 64
Query: 72 LRTRDSKSLRNFVKKLNLKAILVDEN---IVNKLRAAGFRSEYSLNILLVVRLVVPIIFL 128
L + + ++ + + + L AGFR + +L + + + II +
Sbjct: 65 L-----QKWLQPLDRIGQELAGTESDKFATRKLLLMAGFRRQNALGVFTFCKFSLGIICI 119
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
+L ++FG + + +++ + G A VW+ R + + PDALD
Sbjct: 120 LL---FLFGVLESGNRLSLNGLAGSLMLLFFGSFAAEVWLKMRAASRGGRLSSSLPDALD 176
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
L++IC E+G+ + + + V++++ + ++EE+ T AEL L +R A N R +
Sbjct: 177 LMVICAEAGLPLGRIFKTVSKELAFSAPEIAEELGYTHAELQILSDRTKALLNLSERCGV 236
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP 308
+ V LIQ++RYGT + +LR + E+R +++ E+KA L +L+VP+++F LP
Sbjct: 237 ENVEAMVSTLIQAERYGTPLSQALRTISEESRKRLVLDLEEKAGKLPAQLSVPLMVFILP 296
Query: 309 VLILVIIGPAILSIIDTMKD 328
+I ++ PA++ II +
Sbjct: 297 PVIAMMGTPAMIRIIRMLGS 316
>gi|188586923|ref|YP_001918468.1| type II secretion system protein [Natranaerobius thermophilus
JW/NM-WN-LF]
gi|179351610|gb|ACB85880.1| type II secretion system protein [Natranaerobius thermophilus
JW/NM-WN-LF]
Length = 317
Score = 192 bits (489), Expect = 5e-47, Method: Composition-based stats.
Identities = 66/249 (26%), Positives = 125/249 (50%), Gaps = 13/249 (5%)
Query: 78 KSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFG 137
L F++KL + + +AG + LL ++ + L++ + ++
Sbjct: 78 HKLTAFLEKLLPHKVFT--GFKKDIISAGLSQHLNATELLAAYFLIICLGLVMAVFFVTF 135
Query: 138 YDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESG 197
V +++ +GF P +W+S+ V R++ I+RA P+ LDLL + VE+G
Sbjct: 136 LST--------PVWTGMVLVILGFIGPKLWLSSKVNTRKNEIQRALPEFLDLLTVSVEAG 187
Query: 198 ISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQA 257
+ + +L++VAE+ G PL+ E+ E+S +R+ A + R + + A
Sbjct: 188 LGFESSLKKVAEEGTG---PLAVEIKRVTQEISMGKSRKEALIDLKERIDLQDLSTFINA 244
Query: 258 LIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGP 317
+IQ+++ G I L+V E R +R AE++A KL +P+I+F P + ++++GP
Sbjct: 245 IIQAEQLGVGISRVLKVESKEFRRKRRQRAEEQAMKAPVKLLIPLILFIFPTIFIILLGP 304
Query: 318 AILSIIDTM 326
A L I+D +
Sbjct: 305 AALRIMDNL 313
>gi|156741661|ref|YP_001431790.1| type II secretion system protein [Roseiflexus castenholzii DSM
13941]
gi|156232989|gb|ABU57772.1| type II secretion system protein [Roseiflexus castenholzii DSM
13941]
Length = 311
Score = 192 bits (487), Expect = 9e-47, Method: Composition-based stats.
Identities = 76/318 (23%), Positives = 143/318 (44%), Gaps = 17/318 (5%)
Query: 15 AVAITTAVSIFSLIYAVVIPSLGS----GELEKRMKSVAVEREILRKQQITSLQKDSASS 70
+ + ++ L +++ + + R+ L + ++ S
Sbjct: 4 MLPMIGFGALMLLGVGLIVFGMRRSSQPDAISDRLSQFTERTMTLEEMELQQ----PFSQ 59
Query: 71 RLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLIL 130
R+ +KS+ + + K E + L AG + +RL + +I ++
Sbjct: 60 RVLVPLTKSILAKLGEYGPKQSA--ERLRISLAQAGNPGNLTPIQFSGIRLALAVILFLV 117
Query: 131 GIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLL 190
F + + G +G+ P +W+ ++KR+ +I +A PDALDLL
Sbjct: 118 VGAVTFLQG----MEMSQALMYTAIGGVMGYLLPGIWLGQQIKKRKKAIIKALPDALDLL 173
Query: 191 LICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDC 250
ICVE+G+S DQA++R+ E PLS+E +++ R+ A ++ +R +D
Sbjct: 174 CICVEAGLSFDQAMQRLTEKWED---PLSKEFKRVLSDTRLGRPRRDAMKDMIDRCGVDD 230
Query: 251 VRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVL 310
V+ A+IQ+++ G SIG LR+ + R R AE++A K+ PM+ P L
Sbjct: 231 VQTFIGAVIQAEQLGVSIGRILRIQSDQMRIRRRQRAEEEAHKAPIKMLFPMVFLIFPAL 290
Query: 311 ILVIIGPAILSIIDTMKD 328
+VI+GPA+ I+ ++
Sbjct: 291 FIVILGPAVPRIMKSLGG 308
>gi|103488240|ref|YP_617801.1| type II secretion system protein [Sphingopyxis alaskensis RB2256]
gi|98978317|gb|ABF54468.1| type II secretion system protein [Sphingopyxis alaskensis RB2256]
Length = 326
Score = 192 bits (487), Expect = 1e-46, Method: Composition-based stats.
Identities = 80/315 (25%), Positives = 152/315 (48%), Gaps = 9/315 (2%)
Query: 11 ATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASS 70
L + V + SL+Y V L + R++S A+ ++
Sbjct: 10 YLRLGFLVLLFVIVSSLVYFGVRLILSRRVILSRLESPAL------PGSHRDDSDGLRAA 63
Query: 71 RLRTRDSKSLRNFVKKLNLKAI-LVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLI 129
+R+ L +++ L + + ++ AAG+RS ++ I ++RL + IF +
Sbjct: 64 DVRSGAWAKLAATIEQSGLSLGDSNPQGLRRRMLAAGYRSPHAPKIYTLLRLAL--IFAL 121
Query: 130 LGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDL 189
+ + + + +G PS++++ +R+ I +PD LDL
Sbjct: 122 PSALVLPQLLSETPVDLFMLYLQGAGLALMGLVIPSLFLTAKADRRRQEILNGFPDCLDL 181
Query: 190 LLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMD 249
+L+CVE+G+ ++ AL RV ++ ++E++ T EL +R+ A +R+ +D
Sbjct: 182 MLVCVEAGMGLEAALDRVGREMTLSHPLVAEQISQTTLELRAGASREEALRALADRSGVD 241
Query: 250 CVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPV 309
+R LIQSD+ G+SI +LR+ +E R +R M AE+KA L L++P++ LPV
Sbjct: 242 EIRAFATLLIQSDKLGSSIATTLRIYAAEMREKRRMRAEEKAHRLPVLLSIPLVACMLPV 301
Query: 310 LILVIIGPAILSIID 324
+I V++ PA++ +I
Sbjct: 302 MIGVLMLPAVIRVIR 316
>gi|87310969|ref|ZP_01093094.1| probable integral membrane protein [Blastopirellula marina DSM
3645]
gi|87286259|gb|EAQ78168.1| probable integral membrane protein [Blastopirellula marina DSM
3645]
Length = 288
Score = 191 bits (486), Expect = 1e-46, Method: Composition-based stats.
Identities = 58/256 (22%), Positives = 129/256 (50%), Gaps = 8/256 (3%)
Query: 77 SKSLRNFVKKLNLKAILVDENIV----NKLRAAGFRSEYSLNILLVVRLVVPIIFLILGI 132
S SL + + + ++ + +E +L GF S ++++ ++ RL++ + + + +
Sbjct: 24 SNSLASGLNFIEMRLLPNEEESRTYYTRRLVLGGFHSPTAISLFMLARLLLMVCPVFIAL 83
Query: 133 IWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLI 192
L +PF + + +G++G P +W+ + Q+RQ ++ + PD +DL++
Sbjct: 84 AIAL----LGIFPFHTTILVGVCLGFIGILIPELWLRSCTQQRQKRLRESLPDFVDLVVT 139
Query: 193 CVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVR 252
C+E G+ +A+ V +++ LS E+ L + + + +F RT ++ VR
Sbjct: 140 CLEGGMGAAEAISHVHQELTSTHADLSYELGLVARDGTLGISLDKSFRRMAERTGVEEVR 199
Query: 253 NATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLIL 312
+ L S R+G+++G+++ L R +R AE++A K+ +P ++F P + +
Sbjct: 200 TLSTFLEHSQRFGSAMGEAMHELSDMLRYQREQRAEERAQQASVKILIPTLLFIFPTIFV 259
Query: 313 VIIGPAILSIIDTMKD 328
V+ GPA + I + +
Sbjct: 260 VLAGPAAIQISGKLCN 275
>gi|310822671|ref|YP_003955029.1| type II secretion system protein f domain-containing protein
[Stigmatella aurantiaca DW4/3-1]
gi|309395743|gb|ADO73202.1| Type II secretion system protein F domain protein [Stigmatella
aurantiaca DW4/3-1]
Length = 296
Score = 191 bits (485), Expect = 2e-46, Method: Composition-based stats.
Identities = 69/229 (30%), Positives = 116/229 (50%), Gaps = 10/229 (4%)
Query: 95 DENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVI 154
+ + KL AG S Y ++ ++ + +I LI+G+I G + L + +
Sbjct: 72 ESKMRRKLIKAGDPSGYKPEDIMALQEIGLVIGLIMGLILANGLSQHLAWS--------L 123
Query: 155 LIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQ 214
L G P++W+++ V++R +I RA P LDLL + VE+G+ AL +V E G+
Sbjct: 124 LAALFGLYYPAIWVNDQVKRRHLAISRALPYNLDLLTLSVEAGLDFTAALSKVVEK--GK 181
Query: 215 SVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRV 274
S PL EEM + + +L R+ A + R + + ALIQ+D+ GTS+G LR+
Sbjct: 182 SGPLKEEMSIVLKQLKMGKTREEALKAMILRVDLPSLTTFVTALIQADKMGTSLGKVLRI 241
Query: 275 LVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSII 323
++ R +R AEK A K+ P+I P + +V+ GP + +
Sbjct: 242 QSTQMRIDRTQRAEKLAGEAPVKMLFPLIACIFPTVFMVLFGPIVFQFM 290
>gi|296134293|ref|YP_003641540.1| Type II secretion system F domain protein [Thermincola sp. JR]
gi|296032871|gb|ADG83639.1| Type II secretion system F domain protein [Thermincola potens JR]
Length = 304
Score = 190 bits (483), Expect = 2e-46, Method: Composition-based stats.
Identities = 85/313 (27%), Positives = 152/313 (48%), Gaps = 13/313 (4%)
Query: 15 AVAITTAVSIFSLIYAVVIPSLGSGEL-EKRMKSVAVEREILRKQQITSLQKDSASSRLR 73
V T V++F L+ + + +R++ + E ++Q L + +R
Sbjct: 4 LVLGLTFVTVFFLVQGIYYTVYRDKIIVAQRIEEIISMNE--KQQIEDELDRPFFERVVR 61
Query: 74 TRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGII 133
+ + K + K + ++ KL AAG + S N +V++ + ++ ++GI+
Sbjct: 62 PVLERIALSLGKAIPAKKRI---SLQRKLLAAGNPLDLSPNEFMVIQYALTLLLPVIGIV 118
Query: 134 WIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLIC 193
+ L + V V L G +GF P ++ RQ I+ PD LDLL +
Sbjct: 119 VVL----PLGWSPVGMVAVVALGGTIGFLLPEYYLKAKSAARQEEIQDTLPDVLDLLTVS 174
Query: 194 VESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRN 253
VE+G+ D A+ +V E I G LS+E + E+ R+ A ++ RT ++ V++
Sbjct: 175 VEAGLGFDAAMVKVVEKIKG---VLSQECARMLQEVKMGKPRRDALKDLGVRTGVEDVQS 231
Query: 254 ATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILV 313
A+IQ+D+ G SIG+ LRV + R +R AE+KA K+ +P+IIF P + +V
Sbjct: 232 FVGAVIQADQLGVSIGNVLRVQSEQMRQKRRQRAEQKAMKAPVKMLIPLIIFIFPTIFIV 291
Query: 314 IIGPAILSIIDTM 326
++GPA + ++ T
Sbjct: 292 VLGPAAIQVLKTF 304
>gi|84685156|ref|ZP_01013055.1| Putative Flp pilus assembly protein TadC [Maritimibacter
alkaliphilus HTCC2654]
gi|84666888|gb|EAQ13359.1| Putative Flp pilus assembly protein TadC [Rhodobacterales bacterium
HTCC2654]
Length = 329
Score = 190 bits (482), Expect = 3e-46, Method: Composition-based stats.
Identities = 84/334 (25%), Positives = 147/334 (44%), Gaps = 23/334 (6%)
Query: 5 FFDLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQ 64
L ++ L +A+ AVS+ + A+ +RM + +
Sbjct: 9 LTSLLNSPGLLMAM-VAVSVVFIGLALWTAIAMRDPAAERM-----------RAASAAYG 56
Query: 65 KDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVP 124
+ + L+T D+ +K L + I ++LR AGF +L V+RL++
Sbjct: 57 RAANRDLLKTPDALP-EGMLKALIPEERAERTQIRDQLRRAGFGGPNALRNFFVLRLILA 115
Query: 125 IIFLILGIIW----------IFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQK 174
++ + F + F V + +GF +P++W+ ++
Sbjct: 116 TAAPVIALALTALNMSIGLPWFLDKLVGGLTFISASRLVAICTAIGFWSPTIWLKRKIRA 175
Query: 175 RQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPN 234
RQ+ I+ +P+ALDLL I E+G+ D A+ RV + + S +SEE LL AE+ +
Sbjct: 176 RQAEIEAGFPNALDLLQISTEAGMGFDAAMTRVGQSLATVSPAISEEFLLCQAEILASRD 235
Query: 235 RQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASL 294
R+ A + R + V Q + QS YGTSI +L +E R R M+A +KA L
Sbjct: 236 RRQALADMAERMGVAEVSAFAQVVSQSMEYGTSIAKALNAYAAEMREMREMKAIEKANRL 295
Query: 295 GPKLTVPMIIFFLPVLILVIIGPAILSIIDTMKD 328
+++ M + LP L L+ +GP ++ + D
Sbjct: 296 PVQMSGVMSVMMLPALFLITLGPTVIRYLSVFGD 329
>gi|254252516|ref|ZP_04945834.1| Flp pilus assembly protein TadC [Burkholderia dolosa AUO158]
gi|124895125|gb|EAY69005.1| Flp pilus assembly protein TadC [Burkholderia dolosa AUO158]
Length = 333
Score = 190 bits (482), Expect = 4e-46, Method: Composition-based stats.
Identities = 60/301 (19%), Positives = 124/301 (41%), Gaps = 19/301 (6%)
Query: 39 GELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKL----------N 88
L++RM ++ + + +Q + + RTR + + F+++L
Sbjct: 41 DALDRRMAAL----DAAKARQAPNDAAPAQFDAQRTRGGQRVARFLERLSAAGMRWLDTG 96
Query: 89 LKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQL 148
+V + L G+ + + L R+V I +L I G L
Sbjct: 97 FGQYVVAQEDRRLLEQCGYIDARTRGLFLSARIVCGIALPLLFAIVASG-----RMKGSL 151
Query: 149 RVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVA 208
+ + +GF P ++ R+ S+ P +D+L + G+S+DQ+L+ V
Sbjct: 152 WLIGLFAAFGLGFMLPKFYVKRRAAARRQSVVDELPLLVDMLRLLQGVGLSLDQSLQVVT 211
Query: 209 EDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSI 268
D G LS E+ + + + R+ + + + +R + +IQ D++G ++
Sbjct: 212 NDFRGMLPVLSSEVGIAQRQFAAGRTREQSLQRLSGGFDNEDLRAVVRLMIQVDKHGGAV 271
Query: 269 GDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMKD 328
+ L+ R R ++ L K+T M++ LP L++V GP +L+++ +
Sbjct: 272 QEPLKQFGDRLRETRRAMLRERIGRLTVKMTGVMVLTLLPALLIVTAGPGMLAVMHALSA 331
Query: 329 H 329
H
Sbjct: 332 H 332
>gi|87199542|ref|YP_496799.1| type II secretion system protein [Novosphingobium aromaticivorans
DSM 12444]
gi|87135223|gb|ABD25965.1| type II secretion system protein [Novosphingobium aromaticivorans
DSM 12444]
Length = 322
Score = 189 bits (480), Expect = 5e-46, Method: Composition-based stats.
Identities = 82/317 (25%), Positives = 146/317 (46%), Gaps = 13/317 (4%)
Query: 14 LAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLR 73
L ++ A+ + + A A R LR + S + A + L
Sbjct: 9 LLRSLILALFFAATVIAAFSAISYFTRR-------AQVRAHLRTVSVDSGASNGAETSLA 61
Query: 74 TRDSK---SLRNFVKKLNLKAI-LVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLI 129
S S+ N +++ L + + KL AAGF + + I + RL++ +
Sbjct: 62 QSRSGPFWSIVNVIERTGLSLADSNPDALRTKLIAAGFEATEAPTIYTLSRLILVFLLPA 121
Query: 130 LGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDL 189
I ++ L VG+V G +G AP+ ++ +R +I +P+ LDL
Sbjct: 122 CAISYLMLTGSELTIFKLYMVGSV--SGLLGLIAPAWFVRIKADRRMEAITNGFPNCLDL 179
Query: 190 LLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMD 249
+L+CVE+G+ ++ A RV+ +I ++ ++ T L R+ A +D
Sbjct: 180 ILVCVEAGLGMEAAFDRVSREIARAEPQVAHLLVRTNLHLRAGATREEALHRMATLAGVD 239
Query: 250 CVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPV 309
+R+ LIQS++ GTSIG +LRV SE R +R M AE+KA L +++P++ LP
Sbjct: 240 EIRSFATLLIQSEKLGTSIGTTLRVFASEMREKRRMRAEEKAHRLPVLISLPLVTCMLPT 299
Query: 310 LILVIIGPAILSIIDTM 326
+I V++ PA + ++ +
Sbjct: 300 MIGVLMIPAAIRVVRKL 316
>gi|269126091|ref|YP_003299461.1| type II secretion system protein [Thermomonospora curvata DSM
43183]
gi|268311049|gb|ACY97423.1| type II secretion system protein [Thermomonospora curvata DSM
43183]
Length = 307
Score = 188 bits (479), Expect = 7e-46, Method: Composition-based stats.
Identities = 76/293 (25%), Positives = 129/293 (44%), Gaps = 12/293 (4%)
Query: 33 IPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAI 92
P S ++ + ++ S RL + LR + L+
Sbjct: 23 SPPRRSDRPTGVAGALHSIETEYAGKATGTVPPPSRDERLAEPLMRRLRMLAQSLSPGTG 82
Query: 93 LVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGA 152
+ E + +L AG ++ +L + + + G + G +
Sbjct: 83 V--EGLQRRLDLAGNPGAWTPERILSYKGLGLLAVGATGALVGSG-------SVPGILLG 133
Query: 153 VILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIG 212
L GF P + + N +RQ +KR+ PD LDLL++ VE+G+ D AL RVA+
Sbjct: 134 AALGSLFGFFLPDILLYNAGLRRQEELKRSLPDTLDLLVVSVEAGLGFDAALTRVAQHTS 193
Query: 213 GQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSL 272
G PL+EE+ + E+ +R A + R ++ VR AL+Q+ G SIG L
Sbjct: 194 G---PLAEELARVLQEIRIGKSRTEALRSMGERVAVEEVRTFIAALVQASELGMSIGVVL 250
Query: 273 RVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDT 325
R E R +R AE+ A + K+ P+++ LP LI+ ++GP +LSI+++
Sbjct: 251 REQAREARLKRRQRAEEMAQKVPVKVMFPVVLCILPALIITVVGPGVLSIMES 303
>gi|322434108|ref|YP_004216320.1| Type II secretion system F domain protein [Acidobacterium sp.
MP5ACTX9]
gi|321161835|gb|ADW67540.1| Type II secretion system F domain protein [Acidobacterium sp.
MP5ACTX9]
Length = 302
Score = 188 bits (479), Expect = 7e-46, Method: Composition-based stats.
Identities = 65/235 (27%), Positives = 124/235 (52%), Gaps = 11/235 (4%)
Query: 94 VDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAV 153
+ + + + AGFR+ + +I RL+ P ++ GII Q +V +
Sbjct: 76 ENAKLSERFQGAGFRTASARDIYFAARLIGPAAAIVFGIIM-----------PQNKVFWM 124
Query: 154 ILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGG 213
+++G + + AP + +S +V+ R+ I+ + PD +DLL+ICV++G+ +DQA+ RV +++G
Sbjct: 125 MMVGGILYLAPDIILSRMVKGRREKIRLSIPDMIDLLVICVDAGLGMDQAMLRVGQELGT 184
Query: 214 QSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLR 273
+ EE++ E R +++ RTQ+ + L+Q++R+GT I +L
Sbjct: 185 THPQIYEEIMQINREQRAGKLRLESWQAMAQRTQLPEIDGFVNMLMQNERFGTPIARALS 244
Query: 274 VLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMKD 328
R +R AE+ AA K+ P+++F P + +V++GPA +SI +
Sbjct: 245 TFGDNIRQKRRQRAEELAAKTTVKIIFPLVLFIFPSMFIVLLGPAGISIARGLAS 299
>gi|300694107|ref|YP_003750080.1| type II secretion system protein [Ralstonia solanacearum PSI07]
gi|299076144|emb|CBJ35457.1| Type II secretion system protein [Ralstonia solanacearum PSI07]
Length = 324
Score = 188 bits (479), Expect = 7e-46, Method: Composition-based stats.
Identities = 58/316 (18%), Positives = 127/316 (40%), Gaps = 10/316 (3%)
Query: 15 AVAITTAVSIFS--LIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRL 72
A T + +F ++AV++ +L+ + V + K ++
Sbjct: 10 LTAATAGLLVFGGIAVHAVLMRYRSVRKLDTALSDVRTAGTQAAAPAGAPVPKPRPQAQQ 69
Query: 73 RTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGI 132
+ + +L +V E L A G+ E + + R+++P + ++G+
Sbjct: 70 LQQQVAKVGERWIDTSLGHRIVTEEDRKLLEACGYYGEQARTVFGGTRILLPPLLCVVGV 129
Query: 133 IWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLI 192
++ K L + F +G+ AP ++ + R+ + P +D+L +
Sbjct: 130 LYAGELGKALLWGF--------AGFALGYLAPKWLLARRKESRRRRVDDELPAMVDMLRL 181
Query: 193 CVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVR 252
G+SIDQ+L+ +A + G L+ E + + R+ + ++
Sbjct: 182 LQGVGLSIDQSLQVIANEFHGMLPVLAGEFGRANQQFASGRPREQTLLRIARLFDNEDLK 241
Query: 253 NATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLIL 312
L Q DR+G ++ + LR + R +++ L K+TV M++ LP L++
Sbjct: 242 GLITLLTQVDRFGGAVQEPLRQFGVRLQENRRSRLKERVGKLTVKMTVVMVLTLLPALLI 301
Query: 313 VIIGPAILSIIDTMKD 328
+ GP +S+ ++
Sbjct: 302 ITAGPGFMSVTRSLNH 317
>gi|59711125|ref|YP_203901.1| bipartite nuclear localization signal containing protein [Vibrio
fischeri ES114]
gi|59479226|gb|AAW85013.1| bipartite nuclear localization signal containing protein [Vibrio
fischeri ES114]
Length = 290
Score = 188 bits (479), Expect = 7e-46, Method: Composition-based stats.
Identities = 61/270 (22%), Positives = 135/270 (50%), Gaps = 12/270 (4%)
Query: 55 LRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLN 114
LR++Q+ L ++ + L+N +LN +E I KLR AG+ + ++
Sbjct: 29 LREKQLHVLSGNNQKIK-ENELGGWLKNKASELNP----DEEEIKQKLRQAGWENTQYVH 83
Query: 115 ILLVVRLVVPIIF-LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQ 173
+ + ++ V +I +I GI + + + + V +I AP +++ ++
Sbjct: 84 LFMPIKYSVLLIGEVIFGIAYYQSFLSSTAWVIAASLWMVFVI-----IAPDMYLQAKIK 138
Query: 174 KRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLP 233
R + P LDL+ +CV++G++++ +L + +++ G + L++ + E S +
Sbjct: 139 ARVHRVSTQMPYLLDLMAVCVQTGMTVEASLSYLVKEMKGFNKDLTQVLTKMN-ERSRMV 197
Query: 234 NRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAAS 293
+ + E Y + +R+ L QS YG+SI + L L S+ R +++E E++
Sbjct: 198 GLEKSLEEMYVEIPSNEMRSFVMTLTQSMHYGSSIYNVLTTLASDIREVQMLELEERIGK 257
Query: 294 LGPKLTVPMIIFFLPVLILVIIGPAILSII 323
L K++VP+I+F + ++++I P ++ ++
Sbjct: 258 LAAKMSVPLIVFIMIPIVILIAAPGVMRLM 287
>gi|221633000|ref|YP_002522225.1| type II secretion system protein [Thermomicrobium roseum DSM 5159]
gi|221157259|gb|ACM06386.1| type II secretion system protein [Thermomicrobium roseum DSM 5159]
Length = 303
Score = 188 bits (479), Expect = 7e-46, Method: Composition-based stats.
Identities = 83/290 (28%), Positives = 134/290 (46%), Gaps = 13/290 (4%)
Query: 42 EKRMKSVAVEREILRKQQITSLQKDSASSRLRTR----DSKSLRNFVKKLNLKAILVDEN 97
+R + V ER Q+ SL + R R ++ L +FV + A L
Sbjct: 23 AERRQVVLEERLARFAQRPPSLDDLELAVPFRHRVILPLAERLAHFVLRFTPGASL--HR 80
Query: 98 IVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIG 157
I +L AG L +R + + I+ P Q RVG ++
Sbjct: 81 IEQRLVEAGLDGSLRPLTFLGLRFGLALTMASFAIVLTLAGSG----PVQYRVGLPFVLA 136
Query: 158 YVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVP 217
+G+ P+ W+S + +R+ +I+RA PDA+DLL+I VE+G+ DQAL RV E
Sbjct: 137 ALGWIVPNAWLSRRIAQRKRAIQRALPDAIDLLVISVEAGLGFDQALLRVVEKWDN---E 193
Query: 218 LSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVS 277
L+ E T++E+ R+ A + R +D + +L+Q+D+ G SI LR +
Sbjct: 194 LTREFARTLSEMRMGIPRRQALRDLARRVNVDDLNVFIASLVQADQLGVSISQVLRAQAN 253
Query: 278 ETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
+ R R A++ A K+ PM+ P L +VI+GPAI I++ +
Sbjct: 254 QMRLRRRQRAQELAHKAPIKMIFPMVFLIFPALYVVILGPAIPRIVEAFR 303
>gi|115376389|ref|ZP_01463626.1| Flp pilus assembly protein TadC [Stigmatella aurantiaca DW4/3-1]
gi|115366596|gb|EAU65594.1| Flp pilus assembly protein TadC [Stigmatella aurantiaca DW4/3-1]
Length = 238
Score = 188 bits (479), Expect = 8e-46, Method: Composition-based stats.
Identities = 69/229 (30%), Positives = 116/229 (50%), Gaps = 10/229 (4%)
Query: 95 DENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVI 154
+ + KL AG S Y ++ ++ + +I LI+G+I G + L + +
Sbjct: 14 ESKMRRKLIKAGDPSGYKPEDIMALQEIGLVIGLIMGLILANGLSQHLAWS--------L 65
Query: 155 LIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQ 214
L G P++W+++ V++R +I RA P LDLL + VE+G+ AL +V E G+
Sbjct: 66 LAALFGLYYPAIWVNDQVKRRHLAISRALPYNLDLLTLSVEAGLDFTAALSKVVEK--GK 123
Query: 215 SVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRV 274
S PL EEM + + +L R+ A + R + + ALIQ+D+ GTS+G LR+
Sbjct: 124 SGPLKEEMSIVLKQLKMGKTREEALKAMILRVDLPSLTTFVTALIQADKMGTSLGKVLRI 183
Query: 275 LVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSII 323
++ R +R AEK A K+ P+I P + +V+ GP + +
Sbjct: 184 QSTQMRIDRTQRAEKLAGEAPVKMLFPLIACIFPTVFMVLFGPIVFQFM 232
>gi|317154600|ref|YP_004122648.1| type II secretion system F domain-containing protein [Desulfovibrio
aespoeensis Aspo-2]
gi|316944851|gb|ADU63902.1| Type II secretion system F domain protein [Desulfovibrio
aespoeensis Aspo-2]
Length = 317
Score = 188 bits (478), Expect = 9e-46, Method: Composition-based stats.
Identities = 82/315 (26%), Positives = 133/315 (42%), Gaps = 10/315 (3%)
Query: 15 AVAITTAVSIFSLIYAV---VIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSR 71
+ A F+ + + G R++ R + L
Sbjct: 5 LIPFIAAGLAFATVLVAGLGMAGYFGGAGQAARLRERVAGGPTGRSVESRPL-----FDG 59
Query: 72 LRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILG 131
LR S + K+ K + L AG RS ++ ++ + + +
Sbjct: 60 LRRAVSGAFERLGSKVAPKDADEADRTRKALVQAGLRSPGAVIKFQGTKVALAL--CLSS 117
Query: 132 IIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLL 191
+ + L + L + + +G P VW+ KR+ ++ PDALDLL+
Sbjct: 118 LFLVVRSFTLSDLSVSLTCFVAVGLAALGVYGPEVWLRRRTTKRRLAVANELPDALDLLV 177
Query: 192 ICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCV 251
+CVESG+ +DQAL RV ++ +S E L EL R A R +D +
Sbjct: 178 VCVESGMGLDQALDRVCHEMRTSGPVISAEFKLLTLELRAGKGRGDALRGLSERVGLDDL 237
Query: 252 RNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLI 311
+ T L+Q+D +G S+G +LRV R++R AE+KAA L L +P+I F LP L
Sbjct: 238 NSLTSLLVQADIFGISVGRTLRVYSDAMRTKRSQRAEEKAAKLPVLLLLPLIGFILPALF 297
Query: 312 LVIIGPAILSIIDTM 326
+ I+GPA++ ID
Sbjct: 298 IAIMGPAVILFIDVF 312
>gi|295700365|ref|YP_003608258.1| type II secretion system F domain protein [Burkholderia sp.
CCGE1002]
gi|295439578|gb|ADG18747.1| Type II secretion system F domain protein [Burkholderia sp.
CCGE1002]
Length = 322
Score = 188 bits (478), Expect = 9e-46, Method: Composition-based stats.
Identities = 81/320 (25%), Positives = 163/320 (50%), Gaps = 9/320 (2%)
Query: 8 LFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDS 67
+ T++ + +F+ ++ + S + +R++ + +Q+ + +
Sbjct: 3 TLNITQILLLAGVFAIVFAAVFGAMHLSTPRD-MSRRIEQAGGANAVPAPEQLDAAAQTP 61
Query: 68 ASSRLRTRDSKSLRNFVKKLN-LKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPII 126
+L + + KL+ K + +L AG+RS ++ + L + + +
Sbjct: 62 WYEKLVE-----ISQPISKLSVPKDGWEQSALRVQLMNAGWRSANAVPVYLAAKTALALT 116
Query: 127 FLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDA 186
+L ++ ++G R ++++ G+ P+V +S RQ S+ +PDA
Sbjct: 117 LPLLAMLALYGSS--FASSLLERAIVLVVLAAFGYYLPNVVLSRRTAARQRSLVEDFPDA 174
Query: 187 LDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRT 246
LDLL +CVE+G+ +D +L +V E+I +S ++ E+ L + E+ +++ A NF RT
Sbjct: 175 LDLLTVCVEAGLGLDASLMKVGEEIRLRSAVVASELELMLLEMRSGFSKEKALRNFSLRT 234
Query: 247 QMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFF 306
++ + + + LIQ++R+GTSIG SLRVL R+ R M AE++AA + KL P++
Sbjct: 235 GVEDIDSFSAMLIQAERFGTSIGASLRVLSDTLRTRRRMRAEERAAKIALKLLFPLMFCI 294
Query: 307 LPVLILVIIGPAILSIIDTM 326
P L++V++GPA++ I +
Sbjct: 295 FPALLVVLMGPAMIHIYRDL 314
>gi|218461576|ref|ZP_03501667.1| putative component of pilus protein [Rhizobium etli Kim 5]
Length = 165
Score = 188 bits (478), Expect = 9e-46, Method: Composition-based stats.
Identities = 109/165 (66%), Positives = 135/165 (81%)
Query: 162 CAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEE 221
AP+++ISN + KRQ SIKRAWPDALDL+LICVESGISI+ A+RRV+E++G QS L+EE
Sbjct: 1 YAPNIYISNRMGKRQHSIKRAWPDALDLMLICVESGISIEAAMRRVSEELGEQSPALAEE 60
Query: 222 MLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRS 281
M+LT AELSFLP+R+VA EN RTQ++ VR+ TQALIQ+DRYGT + +LRVL E R
Sbjct: 61 MVLTTAELSFLPDRRVALENLATRTQIELVRSVTQALIQADRYGTPVAQALRVLAQEGRD 120
Query: 282 ERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
ER+ EAEKKAA+L PKLTVPMI+FFLPVLI VI+GPA + + D
Sbjct: 121 ERMNEAEKKAAALPPKLTVPMILFFLPVLIAVILGPAGIQVADKF 165
>gi|296122064|ref|YP_003629842.1| type II secretion system protein [Planctomyces limnophilus DSM
3776]
gi|296014404|gb|ADG67643.1| type II secretion system protein [Planctomyces limnophilus DSM
3776]
Length = 426
Score = 188 bits (477), Expect = 1e-45, Method: Composition-based stats.
Identities = 66/279 (23%), Positives = 128/279 (45%), Gaps = 6/279 (2%)
Query: 49 AVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFR 108
+ R+ R + +L + L +A ++I + L AAG+
Sbjct: 118 STYRDRSRGLPRVLAEDLPDELNQGEMTFGALTPALASLLPEAGSRQDSIRSDLYAAGYY 177
Query: 109 SEYSLNILLVVRLVVPII-FLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVW 167
S ++ VR + I+ L G++ +F + + +GA++L+ VG+ P +
Sbjct: 178 SPRAVMNFSAVRYLAMILPMLFCGVLLLFVPPRFEP----IVIGAIVLMPIVGWSLPRLM 233
Query: 168 ISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIA 227
+ N + R++ I++A PD LD+L +CV G+++ +L R+ ++ G L +E+ +
Sbjct: 234 VRNKARDRRNEIEKAMPDLLDMLNMCVSQGMTVPASLERIRVEMKGAYPALEQELKIINE 293
Query: 228 ELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEA 287
+ + VA +NF R + V + T L+Q+ R GTS+ +L R A
Sbjct: 294 QSRIG-SMDVALKNFSQRVDVPEVHSFTSLLMQTSRMGTSVSGALTEYAETMRESLKQRA 352
Query: 288 EKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
E+K +L P ++ +P + L ++GPAI+ +
Sbjct: 353 EEKGNRATFRLLFPTVLCLMPAVYLFLMGPAIIELSRFF 391
>gi|197295161|ref|YP_002153702.1| flp type pilus assembly protein [Burkholderia cenocepacia J2315]
gi|195944640|emb|CAR57244.1| flp type pilus assembly protein [Burkholderia cenocepacia J2315]
Length = 324
Score = 187 bits (476), Expect = 1e-45, Method: Composition-based stats.
Identities = 69/238 (28%), Positives = 129/238 (54%), Gaps = 2/238 (0%)
Query: 89 LKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQL 148
K + + +L AG+R+ + + + ++ + ++ + E
Sbjct: 80 PKEGWENSPLRIRLMNAGWRNPSAAALYFTAKTMLALGLPCAALLVLITTSLGDERALLS 139
Query: 149 RVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVA 208
+ ++ + +G+ P+V +S V+ RQ I +PDALDLL +CVE+G+ +D AL +V+
Sbjct: 140 VI--LVALAGIGYYIPNVVLSQRVKVRQQKIFEDFPDALDLLTVCVEAGLGLDAALMKVS 197
Query: 209 EDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSI 268
E++ +S ++ E+ L + E+ ++ A N RT ++ + + LIQ+DR+GTSI
Sbjct: 198 EELRFRSEVVASELDLLLLEMRSGFTKETALRNLALRTGVEDIESFCAMLIQADRFGTSI 257
Query: 269 GDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
+SLRVL R+ R M AE++AA + KL P+I P L++V++GPA++ + +
Sbjct: 258 SESLRVLSDMLRTRRRMRAEERAAKIALKLLFPLIFCIFPALMVVLLGPAMIHVYRVL 315
>gi|197335643|ref|YP_002155274.1| bipartite nuclear localization signal containing protein [Vibrio
fischeri MJ11]
gi|197317133|gb|ACH66580.1| bipartite nuclear localization signal containing protein [Vibrio
fischeri MJ11]
Length = 290
Score = 187 bits (476), Expect = 1e-45, Method: Composition-based stats.
Identities = 61/272 (22%), Positives = 135/272 (49%), Gaps = 12/272 (4%)
Query: 53 EILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYS 112
LR++Q+ L + ++ L++ +LN +E I KLR AG+ +
Sbjct: 27 RFLREKQLQVLSGSNQKTK-ENEIGGWLKSKASELNP----DEEEIKQKLRQAGWSNTQY 81
Query: 113 LNILLVVRLVVPIIF-LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNL 171
+++ + ++ V +I +I GI + + + + V +I AP +++
Sbjct: 82 VHLFMPIKYSVLLIGEVIFGIAYYQSFLSSTAWVITASLWMVFVI-----IAPDMYLQAK 136
Query: 172 VQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSF 231
++ R + P LDL+ +CV++G++++ +L +A+++ G + L++ + E S
Sbjct: 137 IKARIHRVSTQMPYLLDLMAVCVQTGMTVEASLSYLAKEMKGFNKDLTQVLTKMN-ERSR 195
Query: 232 LPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKA 291
+ + + E Y + +R+ L QS YG+SI L L S+ R +++E E++
Sbjct: 196 MVGLEKSLEEMYVEIPSNEMRSFVMTLTQSMHYGSSIYSVLTTLASDIREVQMLELEERI 255
Query: 292 ASLGPKLTVPMIIFFLPVLILVIIGPAILSII 323
L K++VP+I+F + ++++I P ++ ++
Sbjct: 256 GKLAAKMSVPLIVFIMIPIVILIAAPGVMRLM 287
>gi|90411198|ref|ZP_01219211.1| hypothetical putative tight adherence TadC-related transmembrane
protein [Photobacterium profundum 3TCK]
gi|90328044|gb|EAS44365.1| hypothetical putative tight adherence TadC-related transmembrane
protein [Photobacterium profundum 3TCK]
Length = 224
Score = 187 bits (476), Expect = 2e-45, Method: Composition-based stats.
Identities = 62/227 (27%), Positives = 112/227 (49%), Gaps = 3/227 (1%)
Query: 103 RAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFC 162
AG+ + +L +++++ II L +I L E Q + +L +
Sbjct: 1 MHAGYEQKQALTNFYAIKIILVIIALFGVLI---SSKFLPELSTQKILFYTLLAMAIATF 57
Query: 163 APSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEM 222
P+ + +KR + A+PDALDLL++ E+G+ AL RVA +I S LS E+
Sbjct: 58 LPNFILQKKAKKRIRKLSNAFPDALDLLVVTTEAGLGFLAALNRVANEIDAISPELSNEL 117
Query: 223 LLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSE 282
+ ++ +A F RT + ++ + QS + G+S+GD+LR E R
Sbjct: 118 QIVCRKVRLGVPMPIALAQFIERTGLLELQGLVSIISQSVKLGSSMGDTLREYAIEFRDR 177
Query: 283 RLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMKDH 329
R+ +AE++AA +G K+ P++ P +V +GPAI+++++
Sbjct: 178 RMQKAEEEAAKIGTKMIFPLVTCIWPGFFVVAVGPAIIAVLEVFGSK 224
>gi|83747913|ref|ZP_00944945.1| TRANSMEMBRANE TIGHT ADHERENCE TADC RELATED PROTEIN; tadC2
[Ralstonia solanacearum UW551]
gi|207739454|ref|YP_002257847.1| pilus assembly protein tadc [Ralstonia solanacearum IPO1609]
gi|83725446|gb|EAP72592.1| TRANSMEMBRANE TIGHT ADHERENCE TADC RELATED PROTEIN; tadC2
[Ralstonia solanacearum UW551]
gi|206592830|emb|CAQ59736.1| pilus assembly protein tadc [Ralstonia solanacearum IPO1609]
Length = 326
Score = 187 bits (475), Expect = 2e-45, Method: Composition-based stats.
Identities = 62/318 (19%), Positives = 127/318 (39%), Gaps = 12/318 (3%)
Query: 15 AVAITTAVSIFS--LIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQ--KDSASS 70
A T + +F L++AV+ + +L+ + V T L K A +
Sbjct: 10 LTAATAGLLVFGGVLVHAVLTRYRSARKLDTALTDVRTAGTQAAAPAGTPLPVPKPRAQA 69
Query: 71 RLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLIL 130
+ + + L +V E L G+ E + + R+++P +L
Sbjct: 70 QQLQQQVAKVGQRWIDTGLGQRIVTEEDRRLLEECGYYGEQARTVFGGTRILLPPFLCVL 129
Query: 131 GIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLL 190
G+++ + K L + F +G+ P ++ + R+ + P +D+L
Sbjct: 130 GVLYAAAFWKALLWGF--------AGFALGYLGPKWLLTRRKESRRRRVDDELPVMVDML 181
Query: 191 LICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDC 250
+ G+SIDQ+L+ +A + G L+ E + + R+ +
Sbjct: 182 RLLQGVGLSIDQSLQVIANEFYGMLPVLAGEFGRANQQFASGRPREQTLLRIAKMFDSED 241
Query: 251 VRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVL 310
++ L Q DR+G ++ + LR + R +++ L K+TV M++ LP L
Sbjct: 242 LKGLITLLTQVDRFGGAVQEPLRQFGVRLQENRRSRLKERVGKLTVKMTVVMVLTLLPAL 301
Query: 311 ILVIIGPAILSIIDTMKD 328
+++ GP +S+ T+
Sbjct: 302 LIITAGPGFVSVTRTLHH 319
>gi|78060306|ref|YP_366881.1| putative Flp pilus assembly protein TadC [Burkholderia sp. 383]
gi|77964856|gb|ABB06237.1| putative Flp pilus assembly protein TadC [Burkholderia sp. 383]
Length = 324
Score = 186 bits (473), Expect = 3e-45, Method: Composition-based stats.
Identities = 69/238 (28%), Positives = 127/238 (53%), Gaps = 2/238 (0%)
Query: 89 LKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQL 148
K + + +L AG+R++ + + + + + ++ + E
Sbjct: 80 PKEGWENSPLRIRLMNAGWRNQSAAALYFTAKTALALGLPCAALLVLITTSLGDERAILS 139
Query: 149 RVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVA 208
+ ++ +G+ P++ +S V+ RQ I +PDALDLL +CVE+G+ +D AL +V+
Sbjct: 140 AI--LVAFAGIGYYIPNIVLSQRVKVRQQKIFEDFPDALDLLTVCVEAGLGLDAALMKVS 197
Query: 209 EDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSI 268
E++ S ++ E+ L + E+ ++ A N RT ++ + + LIQ+DR+GTSI
Sbjct: 198 EELRFSSEVVASELDLLLLEMRSGFTKETALRNLALRTGVEDIESFCAMLIQADRFGTSI 257
Query: 269 GDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
+SLRVL R+ R M AE++AA + KL P+I P L+LV++GPA++ + +
Sbjct: 258 SESLRVLSDMLRTRRRMRAEERAAKIALKLLFPLIFCIFPALMLVLLGPAMIHVYRVL 315
>gi|170734860|ref|YP_001773974.1| type II secretion system protein [Burkholderia cenocepacia MC0-3]
gi|169820898|gb|ACA95479.1| type II secretion system protein [Burkholderia cenocepacia MC0-3]
Length = 324
Score = 186 bits (473), Expect = 4e-45, Method: Composition-based stats.
Identities = 68/238 (28%), Positives = 130/238 (54%), Gaps = 2/238 (0%)
Query: 89 LKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQL 148
K + + +L AG+R++ + + + ++ + ++ + E
Sbjct: 80 PKEGWENSPLRIRLMNAGWRNQSAAAVYFTAKTMLALGLPCAALLALITTSLGDERALLS 139
Query: 149 RVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVA 208
+ ++ + +G+ P++ +S V+ RQ I +PDALDLL +CVE+G+ +D AL +V+
Sbjct: 140 LI--LVALAGIGYYIPNIVLSQRVKVRQRKIFEDFPDALDLLTVCVEAGLGLDAALMKVS 197
Query: 209 EDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSI 268
E++ +S ++ E+ L + E+ ++ A N RT ++ + + LIQ+DR+GTSI
Sbjct: 198 EELRFRSEVVASELDLLLLEMRSGFTKETALRNLALRTGVEDIESFCAMLIQADRFGTSI 257
Query: 269 GDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
+SLRVL R+ R M AE++AA + KL P+I P L++V++GPA++ + +
Sbjct: 258 SESLRVLSDMLRTRRRMRAEERAAKIALKLLFPLIFCIFPALMMVLLGPAMIHVYRVL 315
>gi|300697738|ref|YP_003748399.1| type II secretion system protein [Ralstonia solanacearum CFBP2957]
gi|299074462|emb|CBJ54012.1| Type II secretion system protein [Ralstonia solanacearum CFBP2957]
Length = 326
Score = 186 bits (472), Expect = 4e-45, Method: Composition-based stats.
Identities = 49/241 (20%), Positives = 102/241 (42%), Gaps = 8/241 (3%)
Query: 88 NLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQ 147
L +V E L G+ E + + R+++P +LG+++ + K L + F
Sbjct: 87 GLGQRIVTEEDRRLLEECGYYGEQARTVFGGTRILLPPFLCVLGVLYAGAFWKALLWGF- 145
Query: 148 LRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRV 207
+G+ P ++ + R+ + P +D+L + G+SIDQ+L+ +
Sbjct: 146 -------AGFALGYLGPKWLLTRRKESRRRRVDDELPVMVDMLRLLQGVGLSIDQSLQVI 198
Query: 208 AEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTS 267
A + G L+ E + + R+ + ++ L Q DR+G +
Sbjct: 199 ANEFYGMLPVLAGEFGRANQQFASGRPREQTLLRIAKMFDSEDLKGLITLLTQVDRFGGA 258
Query: 268 IGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
+ + LR + R +++ L K+TV M++ LP L+++ GP +S+ ++
Sbjct: 259 VQEPLRQFGVRLQENRRSRLKERVGKLTVKMTVVMVLTLLPALLIITAGPGFVSVTRSLH 318
Query: 328 D 328
Sbjct: 319 H 319
>gi|325111219|ref|YP_004272287.1| type II secretion system F domain protein [Planctomyces
brasiliensis DSM 5305]
gi|324971487|gb|ADY62265.1| Type II secretion system F domain protein [Planctomyces
brasiliensis DSM 5305]
Length = 461
Score = 186 bits (472), Expect = 5e-45, Method: Composition-based stats.
Identities = 63/241 (26%), Positives = 123/241 (51%), Gaps = 6/241 (2%)
Query: 89 LKAILVDENIVNKLRAAGFRSEYSLNILLVVR-LVVPIIFLILGIIWIFGYDKLLEYPFQ 147
++ + + +L AG+ + ++ L VR L + + LI G++ +FG +L
Sbjct: 208 PESESRRDALKQELVEAGYYNPHAYENLAAVRYLGLMLPLLIFGVLLVFGPPQLEP---- 263
Query: 148 LRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRV 207
+ + +I+ +G+ P + + KR+ I++A PD +DLL +CV G+++ AL RV
Sbjct: 264 VMLVLMIVGAVLGWSIPRLLVRQRAAKRRREIEQALPDVIDLLNMCVSQGMTLRPALARV 323
Query: 208 AEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTS 267
+ +I ++EE+ + AE + L + A N R + + + T LIQ++R GT+
Sbjct: 324 SWEISDTYPAMAEELRIV-AEQANLGTLEHALNNMNERVDVPELHSLTTLLIQTERMGTN 382
Query: 268 IGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
+ DSL R+ A++KA + KL P ++ +P + ++GPA++ + D +
Sbjct: 383 VSDSLTEYSDGMRATLQQRADQKANAATFKLLFPTVLCLMPAVYFFLLGPAVVELSDFFE 442
Query: 328 D 328
Sbjct: 443 S 443
>gi|107028240|ref|YP_625335.1| type II secretion system protein [Burkholderia cenocepacia AU 1054]
gi|116687151|ref|YP_840398.1| type II secretion system protein [Burkholderia cenocepacia HI2424]
gi|105897404|gb|ABF80362.1| type II secretion system protein [Burkholderia cenocepacia AU 1054]
gi|116652866|gb|ABK13505.1| type II secretion system protein [Burkholderia cenocepacia HI2424]
Length = 324
Score = 185 bits (470), Expect = 8e-45, Method: Composition-based stats.
Identities = 68/238 (28%), Positives = 130/238 (54%), Gaps = 2/238 (0%)
Query: 89 LKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQL 148
K + + +L AG+R++ + + + ++ + ++ + E
Sbjct: 80 PKEGWENSPLRIRLMNAGWRNQSAAAVYFTAKTMLALGLPCAALLALITTSLGDERALLS 139
Query: 149 RVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVA 208
+ ++ + +G+ P++ +S V+ RQ I +PDALDLL +CVE+G+ +D AL +V+
Sbjct: 140 LI--LVALAGIGYYIPNIVLSQRVKVRQRKIFEDFPDALDLLTVCVEAGLGLDAALMKVS 197
Query: 209 EDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSI 268
E++ +S ++ E+ L + E+ ++ A N RT ++ + + LIQ+DR+GTSI
Sbjct: 198 EELRFRSEVVASELDLLLLEMRSGFTKETALRNLALRTGVEDIESFCAMLIQADRFGTSI 257
Query: 269 GDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
+SLRVL R+ R M AE++AA + KL P+I P L++V++GPA++ + +
Sbjct: 258 SESLRVLSDMLRTRRRMRAEERAAKIALKLLFPLIFCIFPALMMVLLGPAMIHVYRVL 315
>gi|288956974|ref|YP_003447315.1| type II secretion system [Azospirillum sp. B510]
gi|288909282|dbj|BAI70771.1| type II secretion system [Azospirillum sp. B510]
Length = 334
Score = 185 bits (470), Expect = 9e-45, Method: Composition-based stats.
Identities = 81/259 (31%), Positives = 141/259 (54%), Gaps = 1/259 (0%)
Query: 67 SASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPII 126
L R +S + L + I +L AGFR ++++ L +LV +
Sbjct: 74 RRPGELAARMLRSAHGILGSLAMANAAEQARIRQRLLNAGFRDPETVSLFLTAKLVFGLA 133
Query: 127 FLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDA 186
+ L ++ + G+D L+ R GA+I Y G P ++ L ++RQS+I R PDA
Sbjct: 134 AIALAMVAVLGFD-LVSGGAVPRFGAIIAAAYAGTILPERILALLAKRRQSAIARTLPDA 192
Query: 187 LDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRT 246
LDLL+IC +G S+D +L RV ++ + +SEE+++T EL L +R+ A N R
Sbjct: 193 LDLLIICANAGYSLDLSLARVGREMRLAARAMSEELVITADELRVLTDRREALRNLAERN 252
Query: 247 QMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFF 306
++ +R+ L+Q+ +YGT + +LR L +E R R+M E++AA L ++VP+++
Sbjct: 253 DLEALRSLVATLLQAQKYGTPLTQALRTLAAEMRHARMMAIEERAARLPALISVPLMVLI 312
Query: 307 LPVLILVIIGPAILSIIDT 325
LP + +++ GPA++ + T
Sbjct: 313 LPAVFIIVAGPAVIQVART 331
>gi|171321820|ref|ZP_02910723.1| type II secretion system protein [Burkholderia ambifaria MEX-5]
gi|171092891|gb|EDT38141.1| type II secretion system protein [Burkholderia ambifaria MEX-5]
Length = 330
Score = 185 bits (470), Expect = 9e-45, Method: Composition-based stats.
Identities = 60/320 (18%), Positives = 132/320 (41%), Gaps = 10/320 (3%)
Query: 14 LAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLR 73
L V + +++ A L++RM ++ + + + D+ +
Sbjct: 16 LGVLLLGMLAVLRASAATRAERALVDALDRRMAALDAAKTRVTPNAEAPAKPDARGGQRV 75
Query: 74 TRDSKSLR----NFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLI 129
R + L ++ K I+ DE+ L G+ + + L R+ ++ +
Sbjct: 76 ARFLERLSTAGMRWLDTGLGKHIVADED-RRLLEQCGYVDARTRGLFLSARIACGLVLPL 134
Query: 130 LGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDL 189
L ++ G K + V + ++ +GF P +++ R+ S+ P +D+
Sbjct: 135 LFALFASGRLKGSHW-----VIGMFVVFGLGFMLPKLYVKRRAAARRQSVVDELPLFVDM 189
Query: 190 LLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMD 249
L + G+S+DQ+L+ V D G LS E+ + R+ + + +
Sbjct: 190 LRLLQGVGLSLDQSLQVVTNDFRGMMPVLSSEVGIAQRHFVAGRTREQSMQRLSGGFDNE 249
Query: 250 CVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPV 309
+R + ++Q D++G ++ + L+ R R ++ L K+T M++ LP
Sbjct: 250 DLRAIVRLMVQVDKHGGAVQEPLKQFGDRLRETRRAMLRERIGRLTVKMTGVMVLTLLPA 309
Query: 310 LILVIIGPAILSIIDTMKDH 329
L++V GP +L+++ + H
Sbjct: 310 LLIVTAGPGMLAVMRALSHH 329
>gi|283777928|ref|YP_003368683.1| type II secretion system protein [Pirellula staleyi DSM 6068]
gi|283436381|gb|ADB14823.1| type II secretion system protein [Pirellula staleyi DSM 6068]
Length = 326
Score = 185 bits (469), Expect = 1e-44, Method: Composition-based stats.
Identities = 63/285 (22%), Positives = 139/285 (48%), Gaps = 11/285 (3%)
Query: 49 AVEREILRKQQITSLQKDSASSRLRTRDSKSLR---NFVKKLNLKAILVDENIVNKLR-- 103
+ R R + +T + R R + ++ + +L + DE +L+
Sbjct: 33 SDTRLDSRMESLTEGDSHAIDDRYRAKPRGMMQLLVPQIPRLAKVILPNDEATRTRLQAQ 92
Query: 104 --AAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGF 161
AG + ++ + L +LV+ I ++G++ + + + G G
Sbjct: 93 LIQAGIYAPSAMGLYLTAKLVLMTIPPVVGLVVAW----FGWFDPAYAMLLGGAGGCAGM 148
Query: 162 CAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEE 221
PS+W++ KRQ ++ + D LDL++ C+E G+ + A+ +VA+++ L+ E
Sbjct: 149 LMPSMWLAYYRAKRQRQLRTSLADFLDLMVTCLEGGVGMQAAISQVADELRTPHPILATE 208
Query: 222 MLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRS 281
+L+ + E+ + +VA + RT ++ +R+ + Q+ R+G+++ D++R L R+
Sbjct: 209 LLVVLREVEVGRSIEVALAHLAERTGLEELRSLATFVQQAQRFGSTMADAMRELSDMLRT 268
Query: 282 ERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
+R AE++A K+ +P ++F P + +V+ GPA + I +++
Sbjct: 269 QRETRAEERAQKASVKILIPTLLFIFPTVFVVLAGPAAIQIQESL 313
>gi|17549304|ref|NP_522644.1| putative tight adherence TadC related transmembrane protein
[Ralstonia solanacearum GMI1000]
gi|17431556|emb|CAD18234.1| probable pilus assembly tadc transmembrane protein [Ralstonia
solanacearum GMI1000]
Length = 326
Score = 185 bits (469), Expect = 1e-44, Method: Composition-based stats.
Identities = 48/241 (19%), Positives = 106/241 (43%), Gaps = 8/241 (3%)
Query: 88 NLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQ 147
L +V E L G+ E + + R+++P + ++G+++ + + L + F
Sbjct: 87 GLGHRIVTEEDRKLLEECGYYGEQARTVFGGTRILLPPLLCVVGVLYAASFREALLWGF- 145
Query: 148 LRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRV 207
+G+ AP ++ + R+ + P +D+L + G+SIDQ+L+ +
Sbjct: 146 -------AGFALGYLAPKWLLARRKESRRRRLDDELPVMVDMLRLLQGVGLSIDQSLQVI 198
Query: 208 AEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTS 267
A + G L++E + + +R+ + ++ L Q DR+G +
Sbjct: 199 ANEFHGMLPVLADEFGRANQQFASGRSREQTLLRIARLFDNEDLKGLITLLTQVDRFGGA 258
Query: 268 IGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
+ + LR + R +++ L K+TV M++ LP L+++ GP +S+ ++
Sbjct: 259 VQEPLRQFGLRLQENRRSRLKERVGKLTVKMTVVMVLTLLPALLIITAGPGFMSVTRSLH 318
Query: 328 D 328
Sbjct: 319 H 319
>gi|86159245|ref|YP_466030.1| type II secretion system protein [Anaeromyxobacter dehalogenans
2CP-C]
gi|85775756|gb|ABC82593.1| type II secretion system protein [Anaeromyxobacter dehalogenans
2CP-C]
Length = 306
Score = 184 bits (468), Expect = 1e-44, Method: Composition-based stats.
Identities = 70/265 (26%), Positives = 136/265 (51%), Gaps = 4/265 (1%)
Query: 62 SLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRL 121
+ +A+ L + L+ + + + + + +L AG R + + +
Sbjct: 38 RRLRATAAGALDGDPALQLQPGLASVEEEPGVGGSRLRRELVWAGIRRAGAAQGFVAAK- 96
Query: 122 VVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKR 181
+ + + + L P + + A LI + F P++W+ VQ RQ+ + R
Sbjct: 97 ---VALAVGALAAFAALNALRTEPVRTGLPAAALITGLAFFLPNLWLRARVQARQTQLDR 153
Query: 182 AWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFEN 241
+ PDALDLL+ CVE+G+ +D AL+RV++++ LS+E+ L E+ R AF
Sbjct: 154 SLPDALDLLVTCVEAGLGLDSALQRVSDEVALAHPLLSKELRLVFLEVKAGIARISAFRR 213
Query: 242 FYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVP 301
RT +R+ + L Q++ +GTS+G +LR+ R R+ AE+KAA + K+++P
Sbjct: 214 MAERTGAPELRSLSATLAQTELFGTSVGAALRIQAEGIRIRRMHRAEEKAAYVSVKMSLP 273
Query: 302 MIIFFLPVLILVIIGPAILSIIDTM 326
+++ LP + V++GPA++++ + +
Sbjct: 274 LVLCILPCVFAVVLGPAVVNMAERL 298
>gi|167836684|ref|ZP_02463567.1| Bacterial type II secretion system protein F domain [Burkholderia
thailandensis MSMB43]
Length = 310
Score = 184 bits (468), Expect = 1e-44, Method: Composition-based stats.
Identities = 78/284 (27%), Positives = 141/284 (49%), Gaps = 6/284 (2%)
Query: 40 ELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIV 99
+ +R++ VA R + ++ + R + + + + + +
Sbjct: 28 RIAQRVRQVAA-----RTAAEVQVGASASVQPVSQRVKRRIALLGELVPILDAEQRTKVA 82
Query: 100 NKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYV 159
+L +AGFR ++++L ++L+V + F + I+ ++ EY F R + +
Sbjct: 83 QRLISAGFRDRRAVSVLAGLKLLVGVGFALGMIVGASHVPRIGEY-FVFRALMMAGAFMI 141
Query: 160 GFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLS 219
G P + ++++RQ I PDALDLL+IC +G S+ A++RVA ++ PL+
Sbjct: 142 GMMLPEFVLDLMIRQRQKRIAAYLPDALDLLVICTNAGNSLVVAIKRVASELKMICPPLA 201
Query: 220 EEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSET 279
+E +T EL + A R + R L+QS +YGT I SLR L
Sbjct: 202 DEFAVTADELQIGGDISSALNALAKRIAVPSTRALVTTLVQSQQYGTPITQSLRQLSRTE 261
Query: 280 RSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSII 323
RS +++ E+KAA L PK+++PM++F +P + L+ GPAI+ +I
Sbjct: 262 RSMQIVALEEKAAKLAPKMSLPMLLFIMPTVALIAAGPAIIRLI 305
>gi|209515956|ref|ZP_03264817.1| type II secretion system protein [Burkholderia sp. H160]
gi|209503614|gb|EEA03609.1| type II secretion system protein [Burkholderia sp. H160]
Length = 316
Score = 184 bits (467), Expect = 2e-44, Method: Composition-based stats.
Identities = 80/273 (29%), Positives = 139/273 (50%), Gaps = 1/273 (0%)
Query: 55 LRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLN 114
+R L+ + + L R K + +++ + + +L AGFR +++
Sbjct: 45 MRADSHPQLRAEEHVADLWQRLLKRFASLGERVPVGGAAQRNKLGEQLVRAGFRERRAVS 104
Query: 115 ILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQK 174
+++ +L+ +F + I+ ++ EY F R + + VG P + ++ L+ +
Sbjct: 105 MMIGFKLLAGALFALAAIVIGPYVPRIGEY-FVFRALMMGGVFIVGMILPEIALNALISR 163
Query: 175 RQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPN 234
RQ +I PDALDLL+IC +G S+ ++RVA ++ PL++E + EL +
Sbjct: 164 RQKAIASCLPDALDLLVICTNAGNSLVVGVKRVARELETICPPLADEFAVAGDELQVSGD 223
Query: 235 RQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASL 294
A N R + VR LIQS +YGT I SLR+L R+ ++M E+KAA L
Sbjct: 224 SAGALRNLAARIGLPSVRALVTTLIQSQQYGTPITHSLRMLSRAERTAQMMALEEKAAKL 283
Query: 295 GPKLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
K+T+PM++F LP + L+ GPA++ +I K
Sbjct: 284 ATKMTMPMMLFILPTVGLIAAGPAVIRLIAVFK 316
>gi|332798625|ref|YP_004460124.1| Type II secretion system F domain-containing protein
[Tepidanaerobacter sp. Re1]
gi|332696360|gb|AEE90817.1| Type II secretion system F domain protein [Tepidanaerobacter sp.
Re1]
Length = 307
Score = 183 bits (464), Expect = 4e-44, Method: Composition-based stats.
Identities = 78/315 (24%), Positives = 137/315 (43%), Gaps = 13/315 (4%)
Query: 15 AVAITTAVSIFSLIYAVVIPSLGSG-ELEKRMKSVAVEREILRKQQITSLQKDSASSRLR 73
A + A+ ++ LIY +++R+ ++ + R+ + L K R
Sbjct: 4 LFAWSGALLVYCLIYMTFTTIFSKKITMQQRLDEMS--KAGNRQVENDELNK-PFEERFV 60
Query: 74 TRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGII 133
+ +F L +E + +L+ A R L+ + ++ ++
Sbjct: 61 KPTLGRIISFFAVLIPVNAASEERLNQQLKQAEIRMG--AREYQAAVLLFTFVCVVGMVL 118
Query: 134 WIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLIC 193
+ +L LR+ +L Y G + + KR+++I PD LDLL +
Sbjct: 119 Y----STMLGLSVSLRILFGMLGIYAGLVLSRFDLKRNIIKRKTAIYHQLPDTLDLLSVS 174
Query: 194 VESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRN 253
V +G+ DQAL V E + G PL +E+ T E+S R+ A E R + D +
Sbjct: 175 VSAGLGFDQALSYVVEHMEG---PLIQELDTTQREISMGIPRKEALERLAARCECDEIYI 231
Query: 254 ATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILV 313
A+ Q+D G SI + + + R E++A L K+ VPM++F LPV ++
Sbjct: 232 FVGAINQADELGASIKNVMETQAAAIRLTHKQNVEEQAQKLSVKMMVPMVLFILPVTFII 291
Query: 314 IIGPAILSIIDTMKD 328
I+GPAI S+I +K
Sbjct: 292 ILGPAIPSVISALKG 306
>gi|217978831|ref|YP_002362978.1| type II secretion system protein [Methylocella silvestris BL2]
gi|217504207|gb|ACK51616.1| type II secretion system protein [Methylocella silvestris BL2]
Length = 320
Score = 183 bits (464), Expect = 4e-44, Method: Composition-based stats.
Identities = 85/311 (27%), Positives = 161/311 (51%), Gaps = 8/311 (2%)
Query: 18 ITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDS 77
+ + + +L+ +L R VA + L+ I + D + L +
Sbjct: 15 LMAPLGMLALVIGGA--ALIGSGRRTRADLVAQRVDRLQSSAIAAPSSDEPEAHLTAARA 72
Query: 78 KSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFG 137
L L+ + +KL+A ++ +L + RL + F L +I++ G
Sbjct: 73 PPLLAL--SLSPAERRQVVWLFSKLQA---PADQALLYFTIARLGIAASFGALTLIFV-G 126
Query: 138 YDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESG 197
++ F + A + VG+ P+++I+ V++R + PDAL+LL++CVE+G
Sbjct: 127 RLSIVAGSFLTPLMAGLAATAVGWILPAIFIAFGVRRRTKAAAAGLPDALELLVVCVEAG 186
Query: 198 ISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQA 257
+S++ AL+RVA+++ L++E+ LT AE++ LP+R+ A N +R + V++
Sbjct: 187 LSLEDALQRVAQELKNSQPALADELTLTWAEINILPSREQALANLADRVNVPTVKSMVSM 246
Query: 258 LIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGP 317
+ QS RYGT + SLRV +E R++++ E++A L +T+P+++F +P L L++ GP
Sbjct: 247 ISQSMRYGTPLAQSLRVGATEMRNDQMTLLEERANRLPALMTIPVMLFIMPTLFLIVGGP 306
Query: 318 AILSIIDTMKD 328
A L +ID +
Sbjct: 307 AALRLIDMFRS 317
>gi|254255261|ref|ZP_04948577.1| Flp pilus assembly protein TadC [Burkholderia dolosa AUO158]
gi|124900998|gb|EAY71748.1| Flp pilus assembly protein TadC [Burkholderia dolosa AUO158]
Length = 324
Score = 183 bits (464), Expect = 4e-44, Method: Composition-based stats.
Identities = 70/238 (29%), Positives = 127/238 (53%), Gaps = 2/238 (0%)
Query: 89 LKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQL 148
K + + +L AG+R + + + + V+ + G + + L
Sbjct: 80 PKDGWENSPLRIRLMNAGWREQSAAALYFTAKTVLALALP--GAVLLSVITTRFADERAL 137
Query: 149 RVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVA 208
++ + +G+ P++ +S V RQ I +PDALDLL +CVE+G+ +D AL +V+
Sbjct: 138 LSVLLVALAGIGYYVPNLVLSQRVAARQQKIFEDFPDALDLLTVCVEAGLGLDAALMKVS 197
Query: 209 EDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSI 268
E++ +S ++ E+ L + E+ ++ A N RT ++ + + LIQ+DR+GTSI
Sbjct: 198 EELRFRSDVVAGELDLLLLEMRSGFTKETALRNLALRTGVEDIESFCAMLIQADRFGTSI 257
Query: 269 GDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
+SLRVL R+ R M AE++AA + KL P+I P L++V++GPA++ + +
Sbjct: 258 SESLRVLSDLLRTRRRMRAEERAAKIALKLLFPLIFCIFPALMVVLLGPAMIHVYRVL 315
>gi|328952510|ref|YP_004369844.1| Type II secretion system F domain protein [Desulfobacca acetoxidans
DSM 11109]
gi|328452834|gb|AEB08663.1| Type II secretion system F domain protein [Desulfobacca acetoxidans
DSM 11109]
Length = 312
Score = 182 bits (463), Expect = 5e-44, Method: Composition-based stats.
Identities = 87/320 (27%), Positives = 151/320 (47%), Gaps = 18/320 (5%)
Query: 16 VAITTAVSIFSLIYAV--VIPSLGSGELEKRM--KSVAVEREILRKQQITSLQKDSASSR 71
++T AV F+ + + + L L R+ +S+ R+ + S D+A R
Sbjct: 4 WSLTAAVLSFAGVTTLAYYLGRLAEQRLYTRLIKRSLTAGRDRPK-----SFFGDAAPQR 58
Query: 72 LRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYS--LNILLVVRLVVPIIFLI 129
L T L + + V I L AG+RS + +R ++ +
Sbjct: 59 LLTEVVLPLGRLAAPSGEEDLAV---IRRLLCQAGYRSAPYNLVEAYFGLRALLALGLGA 115
Query: 130 LGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDL 189
L ++W+F + + L G+ P+V + +R+ I + PD LDL
Sbjct: 116 LYVLWLFFAGGWTSRS----LLILFLPLTAGYYLPAVILRRQASERRLKIWQELPDVLDL 171
Query: 190 LLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMD 249
L IC+E+G+S+D AL RV+ ++ + LS E+ E+ R+ E +R Q++
Sbjct: 172 LNICIEAGLSLDSALYRVSRELRDIAPVLSRELAQYFLEIQSGLPRKEVLEKIVDRNQVN 231
Query: 250 CVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPV 309
+ L+QS R GT I +SL+V R+ER+ AE++ A + KLT PM + LP
Sbjct: 232 ALSGVVNVLMQSSRLGTDIAESLKVYSVSLRTERMQAAEEQGAKVSTKLTFPMTMLILPA 291
Query: 310 LILVIIGPAILSIIDTMKDH 329
L+LV++GPA++ +++ + H
Sbjct: 292 LLLVVLGPAMIKMLEKLSQH 311
>gi|319951073|ref|ZP_08024926.1| Type II secretion system F domain protein [Dietzia cinnamea P4]
gi|319435233|gb|EFV90500.1| Type II secretion system F domain protein [Dietzia cinnamea P4]
Length = 300
Score = 182 bits (463), Expect = 5e-44, Method: Composition-based stats.
Identities = 90/317 (28%), Positives = 154/317 (48%), Gaps = 20/317 (6%)
Query: 11 ATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASS 70
+ LAV + TA S+F L +AV SG R ++VA LR+ +
Sbjct: 4 SAALAVFVLTA-SMFLLAFAVF-----SGRDTVRARTVAN----LRRGIDDGFASQVDLT 53
Query: 71 RLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLIL 130
+ DS+S V + L + + AG +S+ L+V ++VVP+I ++L
Sbjct: 54 GVDDDDSRSRLYEVAR-RLTPVGTVRRLEKLSIRAGRPRGWSIQRLVVAKIVVPLIVVLL 112
Query: 131 GIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLL 190
G+ L P L + + V + P + + + Q+R I D LD +
Sbjct: 113 GLAL------LRTNPEPLLLLLTLGTAVVCYFLPELLLQSRGQERNDEIALELADTLDQM 166
Query: 191 LICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDC 250
I VE+G+ D A+ R + G PL++E++ T+ E+ R+ A+E RT +
Sbjct: 167 TIAVEAGLGFDAAMARAGRNGTG---PLAQELIRTLQEIQVGQLRRTAYEQLALRTDVPD 223
Query: 251 VRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVL 310
+R +A+IQ+D YG S+ D LR SE R +R AE+KA + K+ P+++ LPVL
Sbjct: 224 LRRFIRAIIQADAYGISVADVLRTQASEMRLKRRQRAEEKAQQVPVKVIFPLLVCILPVL 283
Query: 311 ILVIIGPAILSIIDTMK 327
+V++GP ++++++
Sbjct: 284 FIVLLGPTVINMMEAFS 300
>gi|221197785|ref|ZP_03570831.1| type II secretion system protein [Burkholderia multivorans CGD2M]
gi|221204657|ref|ZP_03577674.1| type II secretion system protein [Burkholderia multivorans CGD2]
gi|221213135|ref|ZP_03586111.1| type II secretion system protein [Burkholderia multivorans CGD1]
gi|221167348|gb|EED99818.1| type II secretion system protein [Burkholderia multivorans CGD1]
gi|221175514|gb|EEE07944.1| type II secretion system protein [Burkholderia multivorans CGD2]
gi|221181717|gb|EEE14118.1| type II secretion system protein [Burkholderia multivorans CGD2M]
Length = 330
Score = 182 bits (461), Expect = 8e-44, Method: Composition-based stats.
Identities = 61/295 (20%), Positives = 124/295 (42%), Gaps = 8/295 (2%)
Query: 38 SGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKK---LNLKAILV 94
+ L++RM ++ R ++ + + D+ S+ R + L + L +V
Sbjct: 40 NDALDRRMAALEAARTRPAGEEDAAAKPDARRSQRVERLLERLSAAGMRWLDTGLGKHVV 99
Query: 95 DENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVI 154
E L G+ + + L RL + + +L I G + +
Sbjct: 100 AEEDRRLLEQCGYVDARTRGLFLSARLAMGVGLPLLFAIVASG-----RVSGGYWMIGMC 154
Query: 155 LIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQ 214
VGF P ++I R+ S+ P +D+L + G+S+DQ+L+ V D G
Sbjct: 155 AAFGVGFMLPKLYIRRRAAARRQSVGNELPLLVDMLRLLQGVGLSLDQSLQVVTNDFRGM 214
Query: 215 SVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRV 274
LS E+ + + + R+ + + + + +R + +IQ D++G ++ + L+
Sbjct: 215 LPVLSSEVGIAQRQFAAGRTREQSLQRLSSGFDNEDLRAVVRLMIQVDKHGGAVQEPLKQ 274
Query: 275 LVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMKDH 329
R R ++ L K+T M++ LP L++V GP +L+++ + H
Sbjct: 275 FGDRLRETRRALLRERIGRLTVKMTGVMVLTLLPALLIVTAGPGMLAVMRALSPH 329
>gi|299069494|emb|CBJ40763.1| Type II secretion system protein [Ralstonia solanacearum CMR15]
Length = 324
Score = 182 bits (461), Expect = 9e-44, Method: Composition-based stats.
Identities = 45/241 (18%), Positives = 99/241 (41%), Gaps = 12/241 (4%)
Query: 88 NLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQ 147
L +V E L G+ E + + R+++P ++G+++ F+
Sbjct: 89 GLGHRIVTEEDRKLLEECGYYGEQARTVFGGTRILLPPFLCVVGVLYA--------ASFR 140
Query: 148 LRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRV 207
+ +G+ AP ++ R+ + P +D+L + G+SIDQ+L+ +
Sbjct: 141 EALLCGFAGFALGYLAPKWLLARRKASRRHRLDDELPVMVDMLRLLQGVGLSIDQSLQVI 200
Query: 208 AEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTS 267
A + G L++E + + R+ + ++ L Q DR+G +
Sbjct: 201 ANEFHGMLPVLADEFGRANQQFASGRPREQTLLRISRLFDNEDLKGLITLLTQVDRFGGA 260
Query: 268 IGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
+ + LR + R +++ L K+TV M++ L+++ GP +S+ ++
Sbjct: 261 VQEPLRQFGLRLQENRRSRLKERVGKLTVKMTVVMVL----TLLIITAGPGFMSVTRSLH 316
Query: 328 D 328
Sbjct: 317 H 317
>gi|119717342|ref|YP_924307.1| type II secretion system protein [Nocardioides sp. JS614]
gi|119538003|gb|ABL82620.1| type II secretion system protein [Nocardioides sp. JS614]
Length = 304
Score = 182 bits (461), Expect = 9e-44, Method: Composition-based stats.
Identities = 76/284 (26%), Positives = 133/284 (46%), Gaps = 16/284 (5%)
Query: 52 REILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAI---------LVDENIVNKL 102
R + R ++ S R + + L + + + I ++L
Sbjct: 28 RGVGRSLELVRAASASPEVVTREAEVPFGERVLDPLRERTLGLGRRLAGHEAADRIRHRL 87
Query: 103 RAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFC 162
AG ++++ L ++ LG++ LLE + V + +G+
Sbjct: 88 DLAGNPPGWTVDRYLTG----TVLGAALGLVGAGLLGLLLEPATPVLVLLLAAGLVLGYF 143
Query: 163 APSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEM 222
P +++ R I+RA PDA+DLL I VE+G+ D A+++VA+ G PL++E+
Sbjct: 144 GPRLYLYQKSYDRSERIRRALPDAIDLLTISVEAGLGFDAAVQQVAQHTEG---PLADEL 200
Query: 223 LLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSE 282
+ E+ +R A + RT + +R A++Q+D G I LRV E R +
Sbjct: 201 SRVLREMQLGQSRSAALRSLSARTTVPELRGFVGAMVQADALGIPIAQVLRVQSREIRVK 260
Query: 283 RLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
R AE++A + K+TVP+I LP L +V++GPA+L+I+DT
Sbjct: 261 RRQHAEERAQQVPVKITVPLIFCILPCLFVVVLGPAVLNIMDTF 304
>gi|149175458|ref|ZP_01854079.1| hypothetical protein PM8797T_18379 [Planctomyces maris DSM 8797]
gi|148845726|gb|EDL60068.1| hypothetical protein PM8797T_18379 [Planctomyces maris DSM 8797]
Length = 370
Score = 182 bits (461), Expect = 1e-43, Method: Composition-based stats.
Identities = 53/245 (21%), Positives = 117/245 (47%), Gaps = 4/245 (1%)
Query: 84 VKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLE 143
+ ++ ++ +L+AAG+ ++L+ +R + + L+ + + E
Sbjct: 111 LAEMMPESEERRAKTKKELQAAGYYQPHALHNFSAIRFISILGTLLFFGGVLLLAPERFE 170
Query: 144 YPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQA 203
P + A++++ + + P + +++ R+S I++ PD LD+L +CV G+++ A
Sbjct: 171 IPI---LVAMLIVPILVWAVPFLIVTSKASDRRSEIEQGIPDMLDMLNMCVSQGMTVPHA 227
Query: 204 LRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDR 263
L+++ ++ L+ E+ + I + S A NF R + V + LIQ+D+
Sbjct: 228 LKKIISELAKVYPALAHELKIVIEQSSIG-TFSQALSNFSKRIDVPEVHSFAALLIQTDQ 286
Query: 264 YGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSII 323
GT++ +L+ R A++KA KL P ++ +P + + ++GPAI+ +
Sbjct: 287 MGTNVTSALQEYSDNMRESLSQRADEKANKATFKLLFPTVLCLMPAIYIFLLGPAIVELS 346
Query: 324 DTMKD 328
D
Sbjct: 347 DFFHS 351
>gi|170700844|ref|ZP_02891833.1| type II secretion system protein [Burkholderia ambifaria IOP40-10]
gi|170134252|gb|EDT02591.1| type II secretion system protein [Burkholderia ambifaria IOP40-10]
Length = 324
Score = 181 bits (460), Expect = 1e-43, Method: Composition-based stats.
Identities = 75/310 (24%), Positives = 148/310 (47%), Gaps = 6/310 (1%)
Query: 18 ITTAVSIF-SLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRD 76
+ + IF + V + +E+R++ + + + S
Sbjct: 11 MLAGLFIFVAGGVLVAMLLFAPRNIERRIQQASGASVGIGGGADGDDGQTSRWIAKLVEL 70
Query: 77 SKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIF 136
S+ + + + + +L AG+R+ + + + V+ ++ ++ +
Sbjct: 71 SQPISRLSV---PQEGWENSPLRIRLMNAGWRNPNAGALYFAAKTVLALVLPGAALLALA 127
Query: 137 GYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVES 196
+ + ++ + +G+ P++ ++ + RQ I +PDALDLL +CVE+
Sbjct: 128 TTRLADQRMLLSFI--LVALAGIGYYVPNMILTRRIATRQRVIFEDFPDALDLLTVCVEA 185
Query: 197 GISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQ 256
G+ +D AL RV+E++ +S +S E+ L + E+ ++ A NF RT + + +
Sbjct: 186 GLGLDAALMRVSEELRFRSEVVSGELDLLLLEMRSGFTKETALRNFALRTGTEDIESFCA 245
Query: 257 ALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIG 316
LIQ+DR+GTSI +SLRVL R+ R M AE++AA + KL P+I P L+ V++G
Sbjct: 246 MLIQADRFGTSIAESLRVLSDMLRTRRRMRAEERAAKIALKLLFPLIFCIFPALMCVLLG 305
Query: 317 PAILSIIDTM 326
PA++ + +
Sbjct: 306 PAMIHVYRVL 315
>gi|254245561|ref|ZP_04938882.1| Flp pilus assembly protein TadC [Burkholderia cenocepacia PC184]
gi|124870337|gb|EAY62053.1| Flp pilus assembly protein TadC [Burkholderia cenocepacia PC184]
Length = 330
Score = 181 bits (459), Expect = 1e-43, Method: Composition-based stats.
Identities = 57/301 (18%), Positives = 120/301 (39%), Gaps = 22/301 (7%)
Query: 39 GELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKL----------N 88
L++RM + L + Q + S++ R + + ++ +L
Sbjct: 41 DALDRRMAA-------LEAAKARPAQDGNVSAKANVRGGQRVERWLDRLSAAGMRWLDTG 93
Query: 89 LKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQL 148
V E L G+ + + L R+ I +L I G +
Sbjct: 94 FGKYAVAEEDRRLLEQCGYIDARTRGLFLSARVACGIALPLLFAICASG-----RMKGSI 148
Query: 149 RVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVA 208
+ + +GF P +++ R+ S+ P +D+L + G+S+DQ+L+ V
Sbjct: 149 WMVGMCAALGLGFMLPKLYVQRRAASRRQSVVDELPLLVDMLRLLQGVGLSLDQSLQVVT 208
Query: 209 EDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSI 268
D G LS E+ + + + R+ + + + + +R + +IQ D++G ++
Sbjct: 209 NDFRGMLPVLSSEVGIAQRQFAAGRTREQSLQRLSSGFDNEDLRAIVRLMIQVDKHGGAV 268
Query: 269 GDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMKD 328
+ L+ R R ++ L K+T M++ LP L++V GP +L+++ +
Sbjct: 269 QEPLKQFGDRLRETRRAMLRERIGRLTVKMTGVMVLTLLPALLIVTAGPGMLAVMRALSS 328
Query: 329 H 329
Sbjct: 329 Q 329
>gi|284048519|ref|YP_003398858.1| Type II secretion system F domain protein [Acidaminococcus
fermentans DSM 20731]
gi|283952740|gb|ADB47543.1| Type II secretion system F domain protein [Acidaminococcus
fermentans DSM 20731]
Length = 309
Score = 181 bits (459), Expect = 2e-43, Method: Composition-based stats.
Identities = 71/318 (22%), Positives = 145/318 (45%), Gaps = 16/318 (5%)
Query: 14 LAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLR 73
L+++I A+ + + + + + E+++R+++ RE + Q+ D L
Sbjct: 4 LSLSIALALFFYLSLSVLALKKIQGEEVKRRLETF---REEEKPQEAEDNPNDLKKIPLY 60
Query: 74 TRDSKSLR----NFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLI 129
R L +F K A+ + + ++ AG + + L+ + V I +
Sbjct: 61 QRTIGRLLAQAMDFFSKFAPSAL--PQMMEQRIILAGKQGIWKPRTLVGIWFVSMIFWGF 118
Query: 130 LGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDL 189
G + G+ L G ++ G P ++++++ RQ+ I R PD LDL
Sbjct: 119 QGFRYTTGHPMSTFGGLVLIWGCLLF----GAMLPFGVLNHIIRNRQTKIIRQLPDVLDL 174
Query: 190 LLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMD 249
L I V++G+S+D A+R+V E + G PL +E + ++ R+ + + R +
Sbjct: 175 LSISVQAGLSLDGAMRKVVERMEG---PLIDEFRRMLRDVRMGMTRRRSMQLMARRCDVQ 231
Query: 250 CVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPV 309
V +++QS+R G S+ D+L + R R A +A K+ P++ P
Sbjct: 232 DVYLFVMSVVQSERLGASMSDTLVIQADNMRDLRRQRARTQAMKAPVKMIFPLVFCIFPA 291
Query: 310 LILVIIGPAILSIIDTMK 327
+ +V++ P+++S++ MK
Sbjct: 292 IFVVVLLPSLISLMQGMK 309
>gi|84498181|ref|ZP_00996978.1| probable secretion system protein TadC [Janibacter sp. HTCC2649]
gi|84381681|gb|EAP97564.1| probable secretion system protein TadC [Janibacter sp. HTCC2649]
Length = 301
Score = 181 bits (459), Expect = 2e-43, Method: Composition-based stats.
Identities = 67/261 (25%), Positives = 115/261 (44%), Gaps = 13/261 (4%)
Query: 67 SASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPII 126
+A RL + L+ ++L+ + L AG + + + +
Sbjct: 52 AAKDRLVVPFEQGLKGVARRLSPAGTAG--RLAASLNRAGNPPAWPVERIFGAK------ 103
Query: 127 FLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDA 186
+G++ + ++ G F P + + N +RQ +++ + DA
Sbjct: 104 --GIGLVAGALLGLFFGGLGLTGLLYAVIGGAALFFLPDLLVYNAGIRRQEQLRKGFADA 161
Query: 187 LDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRT 246
LD+L +CVESG D AL +VA ++ G P++ E ++E R AF+ R
Sbjct: 162 LDMLTVCVESGQGFDAALGQVARNVTG---PIAGEFARVLSEFQIGMTRGQAFQGMAERN 218
Query: 247 QMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFF 306
V+N AL+Q+DR G I LR E R R AE+KA + K+ P+++
Sbjct: 219 TSPEVKNFVSALVQADRLGVPIAGVLREQTKEMRVVRRQLAEEKAQKVTVKVVFPVLLCI 278
Query: 307 LPVLILVIIGPAILSIIDTMK 327
PV+ +VI+GPA ++I D
Sbjct: 279 FPVIFVVILGPAAINIYDLFS 299
>gi|253687073|ref|YP_003016263.1| type II secretion system protein [Pectobacterium carotovorum subsp.
carotovorum PC1]
gi|251753651|gb|ACT11727.1| type II secretion system protein [Pectobacterium carotovorum subsp.
carotovorum PC1]
Length = 319
Score = 180 bits (458), Expect = 2e-43, Method: Composition-based stats.
Identities = 63/222 (28%), Positives = 122/222 (54%), Gaps = 3/222 (1%)
Query: 105 AGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAP 164
AG R ++ L++ + +F I ++G+ + V A ++ +VG P
Sbjct: 99 AGIRRNEAVGWLVMGKFAAGALF---AIALVWGWLPPADRAGLTGVAAGLIGFFVGSMVP 155
Query: 165 SVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLL 224
W+ R + RA PDALDL+++C E+G+ I + L+ V++++G S +++E+
Sbjct: 156 EWWLKWRAASRGEKLARAVPDALDLMVVCAEAGLPIGRVLQVVSKELGLSSPEMADELHY 215
Query: 225 TIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERL 284
T AEL L +R +A ++ RT++ + + LIQ++RYGT + +LR + E+R +
Sbjct: 216 TAAELQILSDRTLAMKHLAERTRVSEIESMVATLIQAERYGTPLSQALRTIADESRKTLI 275
Query: 285 MEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
+ E+KA L +L+VP++ LP +I ++ PA++ ++ +
Sbjct: 276 LSLEEKAGKLPAQLSVPLMALILPPIIAIMASPALVRVVRLL 317
>gi|149909167|ref|ZP_01897824.1| putative type IV pilus protein [Moritella sp. PE36]
gi|149807691|gb|EDM67637.1| putative type IV pilus protein [Moritella sp. PE36]
Length = 294
Score = 180 bits (458), Expect = 2e-43, Method: Composition-based stats.
Identities = 76/307 (24%), Positives = 153/307 (49%), Gaps = 20/307 (6%)
Query: 22 VSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLR 81
+++ LI VI + +G+ ++R L Q++T + + + ++S
Sbjct: 7 IAVALLITGAVIALMFNGQAQRR---------ELLLQRLTLVSVEQSRRFTHLPQAESTS 57
Query: 82 NFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKL 141
+ +LN+ +I L AGF + L+ ++ + LI G+ W + D
Sbjct: 58 SLWPRLNVAP-----DISMLLVKAGFHGPRAGAYFLLSKIS---VMLISGLAWQWYVDFD 109
Query: 142 LEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISID 201
L+ + + ++ G W+ + I A PDALDL++ICVESG++++
Sbjct: 110 LD---KFVLAKTLVFAISGGLLAEHWLKWRARTVNYRIALALPDALDLMVICVESGLTLE 166
Query: 202 QALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQS 261
+RV ++ S LS E L+T AEL L +R A N RT + V N AL Q+
Sbjct: 167 AVFQRVGHEMTAVSPELSREWLITEAELRLLDSRLTALNNLAKRTDLVEVENMVIALSQA 226
Query: 262 DRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILS 321
++YG+ I ++R++ S++R + + E+K + K+++P+++ + ++++I+ P I++
Sbjct: 227 EKYGSKIAPTMRLIASDSRQYQYLRLEEKVGKIPAKMSLPVVVLIMLPVVVLIVAPTIIA 286
Query: 322 IIDTMKD 328
++D++
Sbjct: 287 LLDSIGG 293
>gi|167842403|ref|ZP_02469087.1| bacterial type II secretion system protein F domain [Burkholderia
thailandensis MSMB43]
Length = 244
Score = 180 bits (458), Expect = 2e-43, Method: Composition-based stats.
Identities = 71/231 (30%), Positives = 122/231 (52%), Gaps = 1/231 (0%)
Query: 97 NIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILI 156
+ +L +AGFR +++++++ ++LVV + ++ + +Y LRV +
Sbjct: 14 KLAARLASAGFRECHAVSVMVGLKLVVGACAGLAALVVGAHVPRAGDY-VVLRVLMMAGA 72
Query: 157 GYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSV 216
+G P + V +RQ +I PDALDLL+IC +G S+ A+RRVA ++
Sbjct: 73 FVIGMMLPEHALGFAVARRQKTIAAYLPDALDLLVICTNAGNSLSVAIRRVASELKTICP 132
Query: 217 PLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLV 276
PL++E + EL A R + +R L+QS +YGT I SLR+L
Sbjct: 133 PLADEFSVCANELQIGGEPAFALNAMAARIGLPSMRALVTTLVQSQQYGTPITQSLRMLS 192
Query: 277 SETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
R+ +++ E+KAA L PK+T+PM++F +P + L+ GPA++ +I
Sbjct: 193 RTERAMQMIALEEKAAKLAPKMTLPMMLFVMPTVALIAAGPAVIRLIAVFH 243
>gi|325964118|ref|YP_004242024.1| Flp pilus assembly protein TadC [Arthrobacter phenanthrenivorans
Sphe3]
gi|323470205|gb|ADX73890.1| Flp pilus assembly protein TadC [Arthrobacter phenanthrenivorans
Sphe3]
Length = 292
Score = 180 bits (457), Expect = 2e-43, Method: Composition-based stats.
Identities = 65/252 (25%), Positives = 123/252 (48%), Gaps = 11/252 (4%)
Query: 75 RDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIW 134
+ +L + K+L + + L AG + L +++ + ++ + ILG++
Sbjct: 51 QRPPALLDLSKRLTPSGY--EAKLDRWLSLAGRPASLPLERVIIAKPLLALTGAILGLLM 108
Query: 135 IFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICV 194
P + + + + + P + I N KRQ I+ P+ LD LLI V
Sbjct: 109 Y------ASSPSAQIIALGLFMSALLYFLPDLLIYNKGIKRQQEIELELPNTLDQLLISV 162
Query: 195 ESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNA 254
E+G+ + A+ R G LS+E++ T+ ++ RQ A++ +R+ + +R+
Sbjct: 163 EAGLGFEAAMARAG---GYGDGALSQELMRTLQDIQVGRPRQDAYQALADRSSVQDLRSF 219
Query: 255 TQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVI 314
+A+IQ+D+YG I LR + R +R AE+KA L K+ P+++ PVL +V+
Sbjct: 220 VRAVIQADKYGIGIAKVLRTQAKQARVKRRQRAEEKAMKLPVKVLFPLLLCIFPVLFIVL 279
Query: 315 IGPAILSIIDTM 326
+GPA + I++
Sbjct: 280 LGPAAIKIVEAF 291
>gi|172060499|ref|YP_001808151.1| type II secretion system protein [Burkholderia ambifaria MC40-6]
gi|171993016|gb|ACB63935.1| type II secretion system protein [Burkholderia ambifaria MC40-6]
Length = 330
Score = 180 bits (457), Expect = 3e-43, Method: Composition-based stats.
Identities = 62/319 (19%), Positives = 128/319 (40%), Gaps = 22/319 (6%)
Query: 21 AVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSL 80
V++ A + L++RM ++ R + +D AS++ TR + +
Sbjct: 23 MVALLRASAASRAERALADALDRRMAALEAAR-------VPKTAEDGASAKPDTRGRQRI 75
Query: 81 RNFVKKL----------NLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLIL 130
+ +L +V E L G+ + + L R+ I +L
Sbjct: 76 ERMLDRLSAAGMRWLDTGFGKHIVAEEDRRILEQCGYVDTRTRGLFLSARIACGIALPLL 135
Query: 131 GIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLL 190
I+ G+ K + + +GF P + + R+ S+ P +D+L
Sbjct: 136 FAIFASGHLKGRHW-----MIGTFAAFALGFMLPKLVLRRRAAARRQSVVDELPLFVDML 190
Query: 191 LICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDC 250
+ G+S+DQ+L+ V D G LS E+ + + + R + + + +
Sbjct: 191 RLLQGVGLSLDQSLQVVTNDFRGMMPVLSSEVGIAQRQFAAGRTRDQSMQRLSSGFDNED 250
Query: 251 VRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVL 310
+R + ++Q D++G ++ + L+ R R ++ L K+T M++ LP L
Sbjct: 251 LRAIARLVVQVDKHGGAVQEPLKQFGDRLRETRRAMLRERIGRLTVKMTGVMVLTLLPAL 310
Query: 311 ILVIIGPAILSIIDTMKDH 329
++V GP L+++ + H
Sbjct: 311 LIVTAGPGFLAVMHALSAH 329
>gi|319795783|ref|YP_004157423.1| type II secretion system f domain [Variovorax paradoxus EPS]
gi|315598246|gb|ADU39312.1| Type II secretion system F domain [Variovorax paradoxus EPS]
Length = 316
Score = 180 bits (456), Expect = 3e-43, Method: Composition-based stats.
Identities = 68/322 (21%), Positives = 140/322 (43%), Gaps = 11/322 (3%)
Query: 8 LFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDS 67
+ +LAVA ++ + +L + +L + EL + A+ R I R + +
Sbjct: 2 TLTSAQLAVA---SLVLLALGLTIAAGALIATELRRARSGHAIGRAIRRGVETQIEPAST 58
Query: 68 ASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIF 127
A + D + +++ +A++ DE+ + G S+ + I LV R+ + ++
Sbjct: 59 AEPEVPRSDIELPFHWLDTRMGRALVADED-RQLIDQCGLPSQRAQLIFLVTRIALAVLL 117
Query: 128 LILG-IIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDA 186
+L +W G+ + + + +++ GF P + R+ + + P
Sbjct: 118 PLLVYALWSTGHSQ------RTVIAVLVVAFVFGFMVPKWVLGQFAAARRERVAQELPLF 171
Query: 187 LDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRT 246
+DLL + G+S+DQ+L+ +A D L E+ + S R+ + +
Sbjct: 172 IDLLRLLQGVGLSLDQSLQIMANDFSHVLRVLGYELAFANRQYSQGRTREHSLQRLATLH 231
Query: 247 QMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFF 306
+ + + L+Q DR+G +I + LR+ R R E + + + K+T M+
Sbjct: 232 KNENLGGLVSLLVQVDRHGGAIQEPLRIFSDRLREHRRSEMKDRIGKITVKMTGVMVTTL 291
Query: 307 LPVLILVIIGPAILSIIDTMKD 328
LP LI+V GP ++II ++
Sbjct: 292 LPALIIVTAGPGFIAIIRSLGS 313
>gi|227819312|ref|YP_002823283.1| TadC pilus assembly protein [Sinorhizobium fredii NGR234]
gi|227338311|gb|ACP22530.1| TadC pilus assembly protein [Sinorhizobium fredii NGR234]
Length = 313
Score = 179 bits (455), Expect = 4e-43, Method: Composition-based stats.
Identities = 66/297 (22%), Positives = 144/297 (48%), Gaps = 4/297 (1%)
Query: 27 LIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKK 86
+ +V+I + + E+ R + V V + ++ D A + L +++ +R + +
Sbjct: 11 VFLSVLIFVVTASEVVFRRREVGVRLSEAGSRVASNDIGDGAIADLSDAENRLIRRYFEI 70
Query: 87 LNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPF 146
+ + N+L AG+ S ++ +R +V I ++L + W F L E
Sbjct: 71 --TRRDANANSTQNRLIRAGYFSANAVTTFHAIRAIVCIGMMVLTV-WAFN-RFLPETSR 126
Query: 147 QLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRR 206
+ + + + + F +++I ++ +R +PD +D+L++C+++G+S++ A R
Sbjct: 127 LMTLVIAMFVAGMTFILVNIYIDRRGSAKEREYRRLFPDFMDMLIVCLDAGMSLEAAANR 186
Query: 207 VAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGT 266
VA + + + + + E+ + A N R ++D R+ QS+ GT
Sbjct: 187 VAREFVSKRKDFGLHLSIMMLEVRGGRRLREALANLATRLRIDEARSLAVLFRQSEELGT 246
Query: 267 SIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSII 323
S+ +LRV E R R++ AE+KA SL K+ +P+ F PV +++++ P ++ ++
Sbjct: 247 SVTQTLRVYSKEMRDLRIVRAEEKANSLPIKMLLPLGAFLFPVSLVIVLVPIVIRVV 303
>gi|269836553|ref|YP_003318781.1| type II secretion system protein [Sphaerobacter thermophilus DSM
20745]
gi|269785816|gb|ACZ37959.1| type II secretion system protein [Sphaerobacter thermophilus DSM
20745]
Length = 307
Score = 179 bits (455), Expect = 4e-43, Method: Composition-based stats.
Identities = 71/286 (24%), Positives = 126/286 (44%), Gaps = 13/286 (4%)
Query: 41 LEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVN 100
+E+R+ L + ++ + L R + + F K + + +
Sbjct: 33 IEERLSQYGHRVPTLEELELQQPFNERVLKPLLRRLAGMMSRFAPKTS------HQRLRQ 86
Query: 101 KLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVG 160
KL AG + + ++ +F + + + G +G
Sbjct: 87 KLVEAGNPANLGPAEF----TGLRVLLAGGLGGLLFVLFLMSGSSLTNLILFPAVAGGIG 142
Query: 161 FCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSE 220
+ P VW+ N +++R+S+I RA PDA+DLL I VE+G+ D AL+RV E L+
Sbjct: 143 YLLPGVWLGNRIKRRKSAIIRALPDAIDLLTISVEAGLGFDPALQRVVEKWDN---ELTR 199
Query: 221 EMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETR 280
E ++E+ +R+ A + RT +D + A++Q+D+ G SI LRV + R
Sbjct: 200 EFARMLSEIRMGQSRREALRDLAERTNVDDLNVFVSAVVQADQLGVSITQVLRVQSKQMR 259
Query: 281 SERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
R AE++A K+ PM+ P L +V++GPA+ + D
Sbjct: 260 MRRRQRAEEQAHKAPVKMIFPMVFLIFPALYIVLLGPAVPIVWDAF 305
>gi|296131925|ref|YP_003639172.1| Type II secretion system F domain protein [Thermincola sp. JR]
gi|296030503|gb|ADG81271.1| Type II secretion system F domain protein [Thermincola potens JR]
Length = 319
Score = 179 bits (454), Expect = 6e-43, Method: Composition-based stats.
Identities = 64/236 (27%), Positives = 119/236 (50%), Gaps = 10/236 (4%)
Query: 88 NLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQ 147
K + E + +L AG S+ ++ L +R V+ + L++ +W++ +
Sbjct: 83 RFKLFVSAEKLERQLALAGNPSDLNVGGFLGLRFVLFVAGLLIADVWLY-------FGMP 135
Query: 148 LRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRV 207
L + +I++ GF PS+WI+ L + RQ I PD LD + + +++G+ +D A+ +V
Sbjct: 136 LALFVLIVLPMCGFVLPSIWINMLAKSRQEQIALGLPDFLDGMSVTLQAGVPLDAAMNQV 195
Query: 208 AEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTS 267
+ G PL+EE+ EL R+ A+ NR + + + Q+LIQ + G
Sbjct: 196 VNHMEG---PLAEELQRFNRELELGVPREEAYHRLVNRNECEELETLVQSLIQGSKLGVP 252
Query: 268 IGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSII 323
I + +V+ + R R + ++KAA PK+T+ P ++L I+G +L+II
Sbjct: 253 IARTFKVMADDMRITRFNKVKEKAAKASPKVTLVTSFIITPGVMLAILGLIVLNII 308
>gi|161524901|ref|YP_001579913.1| type II secretion system protein [Burkholderia multivorans ATCC
17616]
gi|189350349|ref|YP_001945977.1| pilus assembly protein [Burkholderia multivorans ATCC 17616]
gi|160342330|gb|ABX15416.1| type II secretion system protein [Burkholderia multivorans ATCC
17616]
gi|189334371|dbj|BAG43441.1| pilus assembly protein [Burkholderia multivorans ATCC 17616]
Length = 330
Score = 179 bits (454), Expect = 7e-43, Method: Composition-based stats.
Identities = 57/293 (19%), Positives = 120/293 (40%), Gaps = 10/293 (3%)
Query: 39 GELEKRMKSVAVEREIL----RKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILV 94
L++RM ++ + + + + RL R S + ++ K I+
Sbjct: 41 DALDRRMATLEAAKARSAPDGDAAAKSEVPGRQSVKRLLERLSATGMRWLDTGLGKHIVA 100
Query: 95 DENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVI 154
DE+ L G+ S + L R+ I+ L ++ G K + V +
Sbjct: 101 DED-RRLLEQCGYVDARSRGLFLSARMACGIVLPFLFAVFASGRMKGGYW-----VIGMC 154
Query: 155 LIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQ 214
+ +G P +++ R+ + P +D+L + G+S+DQ+L+ V D G
Sbjct: 155 VAFALGLMLPKLYVQRRAAARRQCVDDELPLFVDMLRLLQGVGLSLDQSLQVVTNDFRGM 214
Query: 215 SVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRV 274
LS E+ + + R+ + + + +R + ++Q D++G ++ + L+
Sbjct: 215 MPVLSSEVGVAQRQFVAGRTREQSMQRLSGGFDNEDLRAIVRLMVQVDKHGGAVQEPLKQ 274
Query: 275 LVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
R R ++ L K+T M++ LP L++V GP L+++ +
Sbjct: 275 FGDRLRETRRAMLRERIGRLTVKMTGVMVLTLLPALLIVTAGPGFLAVMHALS 327
>gi|50119739|ref|YP_048906.1| putative type IV pilus protein [Pectobacterium atrosepticum
SCRI1043]
gi|49610265|emb|CAG73708.1| putative type IV pilus protein [Pectobacterium atrosepticum
SCRI1043]
Length = 319
Score = 178 bits (453), Expect = 7e-43, Method: Composition-based stats.
Identities = 65/222 (29%), Positives = 123/222 (55%), Gaps = 3/222 (1%)
Query: 105 AGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAP 164
AG R ++ L++ + FL + ++W G+ + V A ++ +VG P
Sbjct: 99 AGLRRNEAVGWLVMGKFAAG-AFLAIALVW--GWLPPADRAGLTGVAAGLIGFFVGSMVP 155
Query: 165 SVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLL 224
W+ R + RA PDALDL+++C E+G+ I + L+ V++++G S +++E+
Sbjct: 156 EWWLKWRAASRGEKLARAVPDALDLMVVCAEAGLPIGRVLQVVSKELGLSSPEMADELHY 215
Query: 225 TIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERL 284
T AEL L +R +A ++ RT++ + + LIQ++RYGT + +LR + E+R +
Sbjct: 216 TAAELQILSDRTLAMKHLAERTRVSEIESMVATLIQAERYGTPLSQALRTIADESRKTLI 275
Query: 285 MEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
+ E+KA L +L+VP++ LP +I ++ PA++ +I +
Sbjct: 276 LGLEEKAGKLPAQLSVPLMALILPPIIAIMASPALVRVIRLL 317
>gi|134295599|ref|YP_001119334.1| type II secretion system protein [Burkholderia vietnamiensis G4]
gi|134138756|gb|ABO54499.1| type II secretion system protein [Burkholderia vietnamiensis G4]
Length = 330
Score = 178 bits (453), Expect = 7e-43, Method: Composition-based stats.
Identities = 62/294 (21%), Positives = 116/294 (39%), Gaps = 8/294 (2%)
Query: 39 GELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKL---NLKAILVD 95
LE+RM ++ R Q+ + R L +L +V
Sbjct: 41 DALERRMAALEAARTRTAPDDGAGTQQVARGRERIERMLSRLAAAGMRLLDTGFGKHIVA 100
Query: 96 ENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVIL 155
E L G+ + + L RLV I +L I G K + +
Sbjct: 101 EEDRRLLEQCGYVDARTRGLFLSARLVCGITVPLLFAILASGRMKGGYWTIGM-----FA 155
Query: 156 IGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQS 215
VGF P +++ R+ S+ P +D+L + G+S+DQ+L+ V D G
Sbjct: 156 AFSVGFMLPKLYVQRRAAARRQSVIDELPLFVDMLRLLQGVGLSLDQSLQVVTNDFRGMM 215
Query: 216 VPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVL 275
LS E+ + + + R + + + + +R + ++Q D++G ++ + L+
Sbjct: 216 PVLSSEVGIAQRQFAAGRTRDQSMQRLSSGFDNEDLRAIARLMVQVDKHGGAVQEPLKQF 275
Query: 276 VSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMKDH 329
R R + L K+T M++ LP L++V GP +L+++ + H
Sbjct: 276 GDRLRETRRAMLRDRIGRLTVKMTGVMVVTLLPALLIVTAGPGLLAVMRALAVH 329
>gi|283769336|ref|ZP_06342235.1| type II secretion system F domain protein [Bulleidia extructa
W1219]
gi|283103993|gb|EFC05377.1| type II secretion system F domain protein [Bulleidia extructa
W1219]
Length = 313
Score = 178 bits (453), Expect = 7e-43, Method: Composition-based stats.
Identities = 76/316 (24%), Positives = 147/316 (46%), Gaps = 11/316 (3%)
Query: 14 LAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAV-EREILRKQQITSLQKDSASSRL 72
L ++++T + ++S+I + L ++K +A E + R + S SR+
Sbjct: 8 LLISVSTGLFVYSMILVKFVN--ERTHLRLQLKDIAETENSLRRNSDDMDFENKSFYSRV 65
Query: 73 RTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGI 132
+ L F+ ++ A + + +L AG R + L +R++V + +I
Sbjct: 66 IFPGIERLSLFIGRVFPIAQKDQDKLNLQLLQAGLRIK--AQTYLTIRILVIAVCMIFTY 123
Query: 133 IWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLI 192
I+I Y + + IL G+ +++ V +RQ+ +++ P LDLL +
Sbjct: 124 IYIGPYHLYFGFSVMMSALGGILS---GYIISRFVLASRVTRRQNLLEKQLPGFLDLLSV 180
Query: 193 CVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVR 252
CVE+G+ DQA++ V + G LS+E + ++S R+ A + R +
Sbjct: 181 CVEAGLGFDQAIQYVCHEYKG---ELSDEFKVVQRDISLGSTRKQALMSLCQRVTSSQMT 237
Query: 253 NATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLIL 312
T A++Q+D G S+ + L R + E+KA L K+ +PM+IF PV+ +
Sbjct: 238 TFTAAVLQADEMGISLKNILNAQSRNVRLAYKNKIEEKAQKLSTKILIPMLIFIFPVIFI 297
Query: 313 VIIGPAILSIIDTMKD 328
+++GPA+ I+ +
Sbjct: 298 ILLGPAVPGIMKALGS 313
>gi|326404408|ref|YP_004284490.1| putative type II secretion system protein [Acidiphilium multivorum
AIU301]
gi|325051270|dbj|BAJ81608.1| putative type II secretion system protein [Acidiphilium multivorum
AIU301]
Length = 307
Score = 178 bits (453), Expect = 7e-43, Method: Composition-based stats.
Identities = 84/317 (26%), Positives = 149/317 (47%), Gaps = 20/317 (6%)
Query: 17 AITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSR----- 71
AI ++F L+ + L + V VE ++ R+ + A+ +
Sbjct: 4 AILWVPALFLLVSVTAVLML---------RLVIVEEKLQRRIDRAAGTASGAAEKGGEPA 54
Query: 72 --LRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLI 129
+ R L V + L + E + + LR AG R + +L + + +L+ +
Sbjct: 55 QPIHVRIVMGLGLAVARSGLLSPRTLEELRHTLRMAGIRDKGALALFVGTKLLSLTGLSV 114
Query: 130 LGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDL 189
L ++ + L V A ++ G P + I ++ ++ DALDL
Sbjct: 115 LSLL----MSRFLHMTAGHAVIAAVVGAIGGLLLPDIIIQQRRKRFIQKVEGGLADALDL 170
Query: 190 LLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMD 249
++IC ++G+S++ AL RVA ++ +++E LT E+ N + + RT +D
Sbjct: 171 MVICADAGLSLESALVRVAGELQLTHPAVAQEFTLTAQEMRIGGNIRDSLNALGVRTGLD 230
Query: 250 CVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPV 309
++ LIQ+ +YGT + +LR L SE R E+L E++AA L LT+PMIIF LP
Sbjct: 231 SLKRLASTLIQTLQYGTPLTQALRTLSSELRQEQLTRFEERAARLPVLLTLPMIIFILPC 290
Query: 310 LILVIIGPAILSIIDTM 326
+ LV+ GPA+L ++ +
Sbjct: 291 VFLVVGGPAVLKLLASF 307
>gi|227326306|ref|ZP_03830330.1| putative type IV pilus protein [Pectobacterium carotovorum subsp.
carotovorum WPP14]
Length = 319
Score = 178 bits (453), Expect = 7e-43, Method: Composition-based stats.
Identities = 64/222 (28%), Positives = 122/222 (54%), Gaps = 3/222 (1%)
Query: 105 AGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAP 164
AG R ++ L++ + +F I ++G+ + V A ++ +VG P
Sbjct: 99 AGIRRSEAVGWLVMGKFAAGALF---AIALVWGWLPPADRAGLTGVAAGLIGFFVGSMVP 155
Query: 165 SVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLL 224
W+ R + RA PDALDL+++C E+G+ I + L+ V++++G S +++E+
Sbjct: 156 EWWLKWRAASRGEKLARAVPDALDLMVVCAEAGLPIGRVLQVVSKELGLSSPEMADELHY 215
Query: 225 TIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERL 284
T AEL L +R +A ++ RT++ + + LIQ++RYGT + +LR + E+R +
Sbjct: 216 TAAELQILSDRTLAMKHLAERTRVSEIESMVATLIQAERYGTPLSQALRTIADESRKTLI 275
Query: 285 MEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
+ E+KA L +L+VP++ LP +I ++ PA++ +I +
Sbjct: 276 LGLEEKAGKLPAQLSVPLMALILPPIIAIMASPALVRVIRLL 317
>gi|172065281|ref|YP_001815993.1| type II secretion system protein [Burkholderia ambifaria MC40-6]
gi|171997523|gb|ACB68440.1| type II secretion system protein [Burkholderia ambifaria MC40-6]
Length = 324
Score = 178 bits (453), Expect = 8e-43, Method: Composition-based stats.
Identities = 81/314 (25%), Positives = 152/314 (48%), Gaps = 11/314 (3%)
Query: 22 VSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQ--KDSASSRLRTRDSKS 79
+S+ + + +G + M A R QQ + + + S+
Sbjct: 4 LSVIHTVMLAGLFIFVAGGVLAAMLLFAPRNIERRIQQASGASVGIGGGADGGDGQTSRW 63
Query: 80 LRNFVK------KLN-LKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGI 132
+ FV+ +L+ + + + +L AG+R+ + + + V+ + +
Sbjct: 64 IAKFVELSQPISRLSVPQEGWENSPLRIRLMNAGWRNPNAGALYFAAKTVLALALPGAAL 123
Query: 133 IWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLI 192
+ + + + ++ + +G+ P+V +S + RQ I +PDALDLL +
Sbjct: 124 LALATTRLADQRMLLSFI--LVALAGIGYYVPNVILSRRIATRQRVIFEDFPDALDLLTV 181
Query: 193 CVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVR 252
CVE+G+ +D AL RV+E++ +S +S E+ L + E+ ++ A NF RT + +
Sbjct: 182 CVEAGLGLDAALMRVSEELRFRSEVVSGELDLLLLEMRSGFTKETALRNFALRTGTEDIE 241
Query: 253 NATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLIL 312
+ LIQ+DR+GTSI +SLRVL R+ R M AE++AA + KL P+I P L+
Sbjct: 242 SFCAMLIQADRFGTSIAESLRVLSDMLRTRRRMRAEERAAKIALKLLFPLIFNIFPALMC 301
Query: 313 VIIGPAILSIIDTM 326
V++GPA++ + +
Sbjct: 302 VLLGPAMIHVYRVL 315
>gi|134291849|ref|YP_001115618.1| type II secretion system protein [Burkholderia vietnamiensis G4]
gi|134135038|gb|ABO59363.1| type II secretion system protein [Burkholderia vietnamiensis G4]
Length = 327
Score = 178 bits (452), Expect = 1e-42, Method: Composition-based stats.
Identities = 74/306 (24%), Positives = 147/306 (48%), Gaps = 3/306 (0%)
Query: 21 AVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSL 80
+ + + A ++ L++R++ + + + + R R +
Sbjct: 16 FLFVAGGVLAAMLLFAPRN-LQRRLQQASGASVAVGAAGAGADDAGAPGPRWIARLVELS 74
Query: 81 RNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDK 140
+ K + + + +L AG+R + + + V+ + ++ +
Sbjct: 75 QPISKLSVPQDGWENSPLRVRLMNAGWRDPSAAGLYFTAKTVLALALPGAALLALATTRL 134
Query: 141 LLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISI 200
+ + ++ + +G+ P+ +S + KRQ +I +PDALDLL +CVE+G+ +
Sbjct: 135 ADQRMLLSFI--LVALAGIGYYLPNFVLSRRITKRQRTIFEDFPDALDLLTVCVEAGLGL 192
Query: 201 DQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQ 260
D AL RV+E++ +S +S E+ L + E+ + A N RT ++ + + LIQ
Sbjct: 193 DAALMRVSEELRFRSEVVSGELDLLLLEMRSGFTKDTALRNLALRTGVEDIESFCAMLIQ 252
Query: 261 SDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAIL 320
+DR+GTS+ +SLRVL R+ R M AE++AA + KL P+I P L+ V++GPA++
Sbjct: 253 ADRFGTSVAESLRVLSDMLRTRRRMRAEERAARIALKLLFPLIFCIFPALMGVLLGPAMI 312
Query: 321 SIIDTM 326
+ +
Sbjct: 313 HVYRVL 318
>gi|327539548|gb|EGF26158.1| Flp pilus assembly protein TadC [Rhodopirellula baltica WH47]
Length = 311
Score = 178 bits (452), Expect = 1e-42, Method: Composition-based stats.
Identities = 68/328 (20%), Positives = 141/328 (42%), Gaps = 20/328 (6%)
Query: 5 FFDLFDATEL--AVAITTAVSI-FSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQIT 61
FD F A++ V I VSI F L + + P + R ++
Sbjct: 1 MFDFFMASQWIALVGIFATVSILFYLAFLLWDPYWR----------IVDGRVAEMLREDD 50
Query: 62 SLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRL 121
S + + S ++ ++ L K+ L N+ ++L AG L ++R
Sbjct: 51 SEEAGTDQSTDFGDPKETPKSGTTWLGGKSAL---NLESQLINAGIHHHGMHRKLTMLRW 107
Query: 122 VVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKR 181
++ ++ I+ E P V + + + + P +W+ V+K ++
Sbjct: 108 LLFLVPPIV----FGSLCYRGEMPLNWAVMSSSFLMLLAYSLPVMWLKRAVRKYHQMLRA 163
Query: 182 AWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFEN 241
A PD LDL+++C+++G+S+ +++++V E++ + E+ L ++ A
Sbjct: 164 ALPDFLDLMVVCLDAGLSLQESIKQVGEELRWIHPAFTHEIDLVQHDIDLGSPVDKAIRR 223
Query: 242 FYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVP 301
F +R+ D +R + + + R+GT++ +SL R +R AE+ A K+ +P
Sbjct: 224 FADRSGYDALRTLSSLIREGQRFGTNVSESLSGHADMLRFQREQAAEENAQKASVKIILP 283
Query: 302 MIIFFLPVLILVIIGPAILSIIDTMKDH 329
++F P + +V++ PA I +
Sbjct: 284 TMLFIFPAIFIVLVSPAAFKIQEAFAAQ 311
>gi|32471258|ref|NP_864251.1| integral membrane protein [Rhodopirellula baltica SH 1]
gi|32396960|emb|CAD71930.1| probable integral membrane protein [Rhodopirellula baltica SH 1]
Length = 313
Score = 178 bits (452), Expect = 1e-42, Method: Composition-based stats.
Identities = 68/328 (20%), Positives = 141/328 (42%), Gaps = 20/328 (6%)
Query: 5 FFDLFDATEL--AVAITTAVSI-FSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQIT 61
FD F A++ V I VSI F L + + P + R ++
Sbjct: 3 MFDFFMASQWIALVGIFATVSILFYLAFLLWDPYWR----------IVDGRVAEMLREDD 52
Query: 62 SLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRL 121
S + + S ++ ++ L K+ L N+ ++L AG L ++R
Sbjct: 53 SEEAGTDQSTDFGDPKETPKSGTTWLGGKSAL---NLESQLINAGIHHHGMHRKLTMLRW 109
Query: 122 VVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKR 181
++ ++ I+ E P V + + + + P +W+ V+K ++
Sbjct: 110 LLFLVPPIV----FGSLCYRGEMPLNWAVMSSSFLMLLAYSLPVMWLKRAVRKYHQMLRA 165
Query: 182 AWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFEN 241
A PD LDL+++C+++G+S+ +++++V E++ + E+ L ++ A
Sbjct: 166 ALPDFLDLMVVCLDAGLSLQESIKQVGEELRWIHPAFTHEIDLVQHDIDLGSPVDKAIRR 225
Query: 242 FYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVP 301
F +R+ D +R + + + R+GT++ +SL R +R AE+ A K+ +P
Sbjct: 226 FADRSGYDALRTLSSLIREGQRFGTNVSESLSGHADMLRFQREQAAEENAQKASVKIILP 285
Query: 302 MIIFFLPVLILVIIGPAILSIIDTMKDH 329
++F P + +V++ PA I +
Sbjct: 286 TMLFIFPAIFIVLVSPAAFKIQEAFAAQ 313
>gi|148253057|ref|YP_001237642.1| hypothetical protein BBta_1517 [Bradyrhizobium sp. BTAi1]
gi|146405230|gb|ABQ33736.1| putative membrane protein of unknown function [Bradyrhizobium sp.
BTAi1]
Length = 320
Score = 178 bits (451), Expect = 1e-42, Method: Composition-based stats.
Identities = 70/220 (31%), Positives = 130/220 (59%), Gaps = 1/220 (0%)
Query: 108 RSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVW 167
++ +++ +V R+V + F L + + L + A I+ VG+ +P +
Sbjct: 98 PADRAMSYFVVARVVFALSFATLTAAAAVHW-AFSGARWWLPIMAAIVAAIVGWISPIFY 156
Query: 168 ISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIA 227
I ++V+++ ++ PDAL+LL++CVE+G+S+++ L RVA ++ L++E++LT A
Sbjct: 157 IDHVVRQQTKAVASGLPDALELLVVCVEAGLSLEEGLHRVAHELREAQPALADELVLTWA 216
Query: 228 ELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEA 287
E++ LP+R A NF R + VR+ L QS + GT + SLRV E R++++M
Sbjct: 217 EINVLPSRAQALTNFAARNDIPSVRSVVSMLSQSLQLGTPLAQSLRVGAVEMRNDQMMLL 276
Query: 288 EKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
E++A+ L LT+P+++F +P + L++ GPA L +ID +
Sbjct: 277 EERASRLPAMLTIPVMLFIMPTVFLLVGGPAALRLIDMFQ 316
>gi|83720640|ref|YP_442975.1| type II secretion system protein F [Burkholderia thailandensis
E264]
gi|83654465|gb|ABC38528.1| Bacterial type II secretion system protein F domain [Burkholderia
thailandensis E264]
Length = 290
Score = 178 bits (451), Expect = 1e-42, Method: Composition-based stats.
Identities = 75/263 (28%), Positives = 136/263 (51%), Gaps = 1/263 (0%)
Query: 65 KDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVP 124
D + + R ++ + + +++ + + +L +AGFR +++++ ++LVV
Sbjct: 28 ADDGARSVPRRVAQRVASLGERVPVVDATQRMKLAARLASAGFRERRAVSVMAGLKLVVG 87
Query: 125 IIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWP 184
+ ++ ++ +Y F LRV + +G P + V +RQ +I P
Sbjct: 88 ACAGLAALVVGAHVPRVGDY-FVLRVLMMAGAFVIGMMLPEHALGFAVARRQKTIAAYLP 146
Query: 185 DALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYN 244
DALDLL+IC +G S+ A+RRVA ++G PL++E + EL + A
Sbjct: 147 DALDLLVICTNAGNSLAVAIRRVASELGTICPPLADEFSVCADELQIGGDAAFALNAMAA 206
Query: 245 RTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMII 304
R + +R L+QS +YGT I SLR+L R+ +++ E+KAA L PK+T+PM++
Sbjct: 207 RIGLPSMRALVTTLVQSQQYGTPITQSLRMLSRTERAMQMIALEEKAAKLAPKMTLPMML 266
Query: 305 FFLPVLILVIIGPAILSIIDTMK 327
F +P + L+ GPA++ +I
Sbjct: 267 FVMPTVALIAAGPAVIRLIAVFH 289
>gi|115361041|ref|YP_778178.1| type II secretion system protein [Burkholderia ambifaria AMMD]
gi|115286369|gb|ABI91844.1| type II secretion system protein [Burkholderia ambifaria AMMD]
Length = 323
Score = 178 bits (451), Expect = 1e-42, Method: Composition-based stats.
Identities = 78/311 (25%), Positives = 153/311 (49%), Gaps = 9/311 (2%)
Query: 18 ITTAVSIF-SLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRD 76
+ + IF + V + +E+R++ + + Q ++L
Sbjct: 11 MLAGLFIFVAGGVLVAMLLFAPRNIERRIQQASGASAGIGGGADGDGQTSRWIAKLVE-- 68
Query: 77 SKSLRNFVKKLN-LKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWI 135
L + +L+ + + + +L AG+R+ + + + V+ ++ ++ +
Sbjct: 69 ---LSQPISRLSVPQEGWENSPLRIRLMNAGWRNPNAGALYFAAKTVLALVLPGAALLAL 125
Query: 136 FGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVE 195
+ + ++ + +G+ P+V +S + RQ I +PDALDLL +CVE
Sbjct: 126 ATTRLAEQRMLLSFI--LVALAGIGYYVPNVILSRRIATRQRVIFEDFPDALDLLTVCVE 183
Query: 196 SGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNAT 255
+G+ +D AL RV+E++ +S ++ E+ L + E+ ++ A NF RT ++ + +
Sbjct: 184 AGLGLDAALMRVSEELRFRSEVVAGELDLLLLEMRSGFTKETALRNFALRTGVEDIESFC 243
Query: 256 QALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVII 315
LIQ+DR+GTSI +SLRVL R+ R M AE++AA + KL P+I P L+ V++
Sbjct: 244 AMLIQADRFGTSIAESLRVLSDMLRTRRRMRAEERAAKIALKLLFPLIFNIFPALMCVLL 303
Query: 316 GPAILSIIDTM 326
GPA++ + +
Sbjct: 304 GPAMIHVYRVL 314
>gi|148261008|ref|YP_001235135.1| type II secretion system protein [Acidiphilium cryptum JF-5]
gi|146402689|gb|ABQ31216.1| type II secretion system protein [Acidiphilium cryptum JF-5]
Length = 307
Score = 178 bits (451), Expect = 1e-42, Method: Composition-based stats.
Identities = 84/317 (26%), Positives = 149/317 (47%), Gaps = 20/317 (6%)
Query: 17 AITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSR----- 71
AI ++F L+ + L + V VE ++ R+ + A+ +
Sbjct: 4 AILWVPALFLLVSVTAVLML---------RLVIVEEKLQRRIDRAAGTASGAAEKGGEAA 54
Query: 72 --LRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLI 129
+ R L V + L + E + + LR AG R + +L + + +L+ +
Sbjct: 55 QPIHVRIVMGLGLAVARSGLLSPRTLEELRHTLRMAGIRDKGALALFVGTKLLSLTGLSV 114
Query: 130 LGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDL 189
L ++ + L V A ++ G P + I ++ ++ DALDL
Sbjct: 115 LSLL----MSRFLHMTAGHAVIAAVVGAIGGLLLPDIIIQQRRKRFIQKVEGGLADALDL 170
Query: 190 LLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMD 249
++IC ++G+S++ AL RVA ++ +++E LT E+ N + + RT +D
Sbjct: 171 MVICADAGLSLESALVRVAGELQLTHPAVAQEFTLTAQEMRIGGNIRDSLNALGVRTGLD 230
Query: 250 CVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPV 309
++ LIQ+ +YGT + +LR L SE R E+L E++AA L LT+PMIIF LP
Sbjct: 231 SLKRLASTLIQTLQYGTPLTQALRTLSSELRQEQLTRFEERAARLPVLLTLPMIIFILPC 290
Query: 310 LILVIIGPAILSIIDTM 326
+ LV+ GPA+L ++ +
Sbjct: 291 VFLVVGGPAVLKLLASF 307
>gi|167581954|ref|ZP_02374828.1| Bacterial type II secretion system protein F domain [Burkholderia
thailandensis TXDOH]
Length = 271
Score = 177 bits (450), Expect = 2e-42, Method: Composition-based stats.
Identities = 75/263 (28%), Positives = 136/263 (51%), Gaps = 1/263 (0%)
Query: 65 KDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVP 124
D + + R ++ + + +++ + + +L +AGFR +++++ ++LVV
Sbjct: 9 ADDGARSVPRRVAQRVASLGERVPVVDATQRMKLAARLASAGFRERRAVSVMAGLKLVVG 68
Query: 125 IIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWP 184
+ ++ ++ +Y F LRV + +G P + V +RQ +I P
Sbjct: 69 ACAGLAALVVGAHVPRVGDY-FVLRVLMMAGAFVIGMMLPEHALGFAVARRQKTIAAYLP 127
Query: 185 DALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYN 244
DALDLL+IC +G S+ A+RRVA ++G PL++E + EL + A
Sbjct: 128 DALDLLVICTNAGNSLAVAIRRVASELGTICPPLADEFSVCADELQIGGDAAFALNAMAA 187
Query: 245 RTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMII 304
R + +R L+QS +YGT I SLR+L R+ +++ E+KAA L PK+T+PM++
Sbjct: 188 RIGLPSMRALVTTLVQSQQYGTPITQSLRMLSRTERAMQMIALEEKAAKLAPKMTLPMML 247
Query: 305 FFLPVLILVIIGPAILSIIDTMK 327
F +P + L+ GPA++ +I
Sbjct: 248 FVMPTVALIAAGPAVIRLIAVFH 270
>gi|108756874|ref|YP_632816.1| type II secretion system protein F domain [Myxococcus xanthus DK
1622]
gi|108460754|gb|ABF85939.1| type II secretion system protein F domain protein [Myxococcus
xanthus DK 1622]
Length = 296
Score = 177 bits (450), Expect = 2e-42, Method: Composition-based stats.
Identities = 66/229 (28%), Positives = 111/229 (48%), Gaps = 10/229 (4%)
Query: 95 DENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVI 154
+ L AG Y ++ ++ V ++ LI+G+I + G F + +
Sbjct: 72 EAKARRNLIKAGEPQAYKPEDIMALQEVSAVVGLIMGLILLNG--------FGVSLVWAP 123
Query: 155 LIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQ 214
L G P +W+++ V+KR I RA P +LDLL + VE+G+ AL +V E G+
Sbjct: 124 LFLLFGMYYPLMWLNDQVKKRHLLISRALPYSLDLLTLSVEAGLDFTAALAKVVEK--GK 181
Query: 215 SVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRV 274
PL EE+ L + +L R+ ++ R + + ALIQ+D+ GTS+G LR+
Sbjct: 182 PGPLREELQLVLKQLKMGKTREEGLKSMIVRVDLPPLTTFVTALIQADKMGTSLGKVLRI 241
Query: 275 LVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSII 323
++ R +R AEK A K+ P+I P + +V+ GP + +
Sbjct: 242 QSTQMRIDRTQRAEKLAGEAPVKMLFPLIACIFPTVFMVLFGPIVFQFM 290
>gi|219883050|ref|YP_002478214.1| type II secretion system protein [Arthrobacter chlorophenolicus A6]
gi|219862056|gb|ACL42397.1| type II secretion system protein [Arthrobacter chlorophenolicus A6]
Length = 293
Score = 177 bits (450), Expect = 2e-42, Method: Composition-based stats.
Identities = 81/310 (26%), Positives = 150/310 (48%), Gaps = 17/310 (5%)
Query: 18 ITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDS 77
+ +V++ V +P L R KS V RE L + S KDS + R
Sbjct: 1 MPASVTLAIYAITVSVPLLLWCVFLGRDKSREVVRENLFRGFEES-SKDSTAGRRW---- 55
Query: 78 KSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFG 137
SL ++ + + + ++ L AG + + L ++ + V+ ++ +LG++ G
Sbjct: 56 -SLAATARRFTMPRAIARLDRLHAL--AGRPAAWPLERVIAAKPVLAVVAFLLGLLLYTG 112
Query: 138 YDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESG 197
P + VI + + P + + + Q+RQ I PD LD ++I VE+G
Sbjct: 113 ------RPGAPLMLLVIAVTVTAYFVPDLLLQSRGQERQKLIGLELPDTLDQMMIAVEAG 166
Query: 198 ISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQA 257
+ D A+ R + G PL+ E++ T+ ++ +R+ A+E RT + + ++
Sbjct: 167 LGFDSAMARAGDKGKG---PLANELVRTLQDMQIGRSRREAYEALGERTSVPDLDAFIRS 223
Query: 258 LIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGP 317
++Q+D YG SI LR E R +R AE+KA + K+ +P+++ LPVL + ++GP
Sbjct: 224 VVQADIYGISISKVLRTQAGEIRLKRRQRAEEKAMQIPVKVIIPLMLCILPVLFIALLGP 283
Query: 318 AILSIIDTMK 327
A+L++I+
Sbjct: 284 AVLNVINQFG 293
>gi|326797332|ref|YP_004315152.1| type II secretion system F domain protein [Marinomonas mediterranea
MMB-1]
gi|326548096|gb|ADZ93316.1| Type II secretion system F domain protein [Marinomonas mediterranea
MMB-1]
Length = 316
Score = 177 bits (450), Expect = 2e-42, Method: Composition-based stats.
Identities = 65/232 (28%), Positives = 119/232 (51%), Gaps = 3/232 (1%)
Query: 97 NIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILI 156
L AG R SL + +L V + ++ + ++ L + ++I
Sbjct: 88 ATRKLLLMAGLRHSQSLGLYTFGKLAVGLFLSVMFVFFVLEKGDRLSLS---ALAGSLII 144
Query: 157 GYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSV 216
++ + +W+ R + + PDALDL++IC E+G+ + + + V++++ S
Sbjct: 145 LFLSSFSAEIWLKMRAASRGGKLSSSLPDALDLMVICAEAGLPLGRIFKTVSKELAFSSP 204
Query: 217 PLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLV 276
L+EE+ T AEL L +R A N +R +D V LIQ++RYGT + +LR +
Sbjct: 205 ELAEEIGYTHAELQILSDRSKALMNLADRCGVDNVAAMVSTLIQAERYGTPLSQALRTIS 264
Query: 277 SETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMKD 328
E+R ++E E+KA L +L+VP+++F LP +I ++ PA++ II +
Sbjct: 265 VESRKNMVLELEEKAGKLPAQLSVPLMVFILPPVIAMMGTPAMIRIIRMLGS 316
>gi|168699471|ref|ZP_02731748.1| probable secretion system protein TadC [Gemmata obscuriglobus UQM
2246]
Length = 307
Score = 177 bits (450), Expect = 2e-42, Method: Composition-based stats.
Identities = 75/309 (24%), Positives = 135/309 (43%), Gaps = 5/309 (1%)
Query: 19 TTAVSIFSLIYAVVIPSLGSG-ELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDS 77
A+++ L + V + L + + V R + R +++ + +
Sbjct: 1 MLALAVGGLAFGAVALGALAAVRLLEERPTHDVGRALRRLRELNGAAAPGDAGEAGGWLA 60
Query: 78 KSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFG 137
+L ++ + ++L AG+R ++ +LV+ I F
Sbjct: 61 TVGAWLGSRLAFRSGARAVELADRLALAGYRHPSAVLCYGAAQLVLMIAPAATAGGAAF- 119
Query: 138 YDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESG 197
LE + + G G APSV + ++KRQ I+ A PDALD++++ VE G
Sbjct: 120 ---TLEGAWNKVLLWAAAGGAAGLVAPSVLLGARIEKRQRLIRNALPDALDIMVLSVEGG 176
Query: 198 ISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQA 257
S++ AL A++I L E+L+ E+ + AF+ F R + R+ A
Sbjct: 177 SSLNAALMWAADEIRDVHPVLGAELLVVQREVQLGLSMGDAFQGFARRCGIPEGRDLAAA 236
Query: 258 LIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGP 317
LIQS++YG S+G +LR R +R AE+ A K+ PM++ P + +V++GP
Sbjct: 237 LIQSEKYGASVGKALRTFADSARQDRQAWAEEVAQKASVKVVFPMLLCIFPAIFIVLLGP 296
Query: 318 AILSIIDTM 326
A + +
Sbjct: 297 AAVQMSQLF 305
>gi|260775648|ref|ZP_05884544.1| type II/IV secretion system protein TadC associated with Flp pilus
assembly [Vibrio coralliilyticus ATCC BAA-450]
gi|260608064|gb|EEX34233.1| type II/IV secretion system protein TadC associated with Flp pilus
assembly [Vibrio coralliilyticus ATCC BAA-450]
Length = 292
Score = 177 bits (449), Expect = 2e-42, Method: Composition-based stats.
Identities = 61/268 (22%), Positives = 124/268 (46%), Gaps = 9/268 (3%)
Query: 56 RKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNI 115
+K++ +L A+ R+ + + N + + ++ KL AG +
Sbjct: 30 KKKKFRALSIGGAADRVAHEEDQL--NRETRWYGFLYQENGDMEQKLERAGIYNNRWAGF 87
Query: 116 LLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKR 175
L V+ + G++ ++ + QL + A+ LI + P +++ + +
Sbjct: 88 YLPVKYTTAFV----GVVALYSSTLGITSMKQLAIIALWLIAVI--VVPDLYLEHRRKVL 141
Query: 176 QSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNR 235
Q I P LDL+ +CV++G++++ +++ ++ ++ L M + E S L
Sbjct: 142 QDKISNQLPYLLDLMAMCVQTGMTVEASIQYLSSELSALDKDLGHTMNIVN-ERSRLVGL 200
Query: 236 QVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLG 295
A + Y R VR+ L QS RYG++I L L S+ R R++ E+K L
Sbjct: 201 DQALDELYQRFPATEVRSFVMTLKQSLRYGSAIYSVLNNLASDIREVRVLALEEKIGKLS 260
Query: 296 PKLTVPMIIFFLPVLILVIIGPAILSII 323
K++VP+I+F L ++++I P I+ ++
Sbjct: 261 AKMSVPLILFILIPIVILIAAPGIMRLM 288
>gi|186474108|ref|YP_001861450.1| type II secretion system protein [Burkholderia phymatum STM815]
gi|184196440|gb|ACC74404.1| type II secretion system protein [Burkholderia phymatum STM815]
Length = 323
Score = 176 bits (448), Expect = 3e-42, Method: Composition-based stats.
Identities = 89/313 (28%), Positives = 155/313 (49%), Gaps = 7/313 (2%)
Query: 18 ITTAVSIFSLIYAVVIP---SLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRT 74
I ++F++++ L L++R+ +A + + + S
Sbjct: 6 ILLLTAMFAIVFGAAWKAMSLLRPDPLKRRIDGIAAASSGVAGMEGEPGVAE-DESPAWM 64
Query: 75 RDSKSLRNFVKKLNLKAILVD-ENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGII 133
+ + V +L+L D + + AG RS+ + + + ++ ++ L ++
Sbjct: 65 ETVAKVSHHVARLSLPKDDWDKSALRRRFANAGLRSDSAPALYFAAKTLLALVLPALALV 124
Query: 134 WIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLIC 193
I L + +GF P+V +S LV+ RQ +I PDALDL+ +C
Sbjct: 125 SITLLAGADGDKLLLVAALA--MAALGFYLPNVVLSRLVEARQRTIFEDLPDALDLMTVC 182
Query: 194 VESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRN 253
VE+G+ +D A++RVAE+IG +S L +E+ L + EL R A N RT ++ +
Sbjct: 183 VEAGLGLDAAMQRVAEEIGVKSRALKDELELVLLELRAGSARDKALRNLALRTGVEDIDT 242
Query: 254 ATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILV 313
T LIQ+DR+GTS+GDSLRV + R+ R + AE++AA + KL P++ P LI+V
Sbjct: 243 LTSMLIQADRFGTSVGDSLRVFIDALRTRRRLRAEEQAAKIALKLLFPLMFCIFPTLIVV 302
Query: 314 IIGPAILSIIDTM 326
+IGPA + + +
Sbjct: 303 LIGPAAMRVAHQL 315
>gi|257139199|ref|ZP_05587461.1| type II secretion system protein F [Burkholderia thailandensis
E264]
Length = 314
Score = 176 bits (447), Expect = 4e-42, Method: Composition-based stats.
Identities = 75/263 (28%), Positives = 136/263 (51%), Gaps = 1/263 (0%)
Query: 65 KDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVP 124
D + + R ++ + + +++ + + +L +AGFR +++++ ++LVV
Sbjct: 52 ADDGARSVPRRVAQRVASLGERVPVVDATQRMKLAARLASAGFRERRAVSVMAGLKLVVG 111
Query: 125 IIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWP 184
+ ++ ++ +Y F LRV + +G P + V +RQ +I P
Sbjct: 112 ACAGLAALVVGAHVPRVGDY-FVLRVLMMAGAFVIGMMLPEHALGFAVARRQKTIAAYLP 170
Query: 185 DALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYN 244
DALDLL+IC +G S+ A+RRVA ++G PL++E + EL + A
Sbjct: 171 DALDLLVICTNAGNSLAVAIRRVASELGTICPPLADEFSVCADELQIGGDAAFALNAMAA 230
Query: 245 RTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMII 304
R + +R L+QS +YGT I SLR+L R+ +++ E+KAA L PK+T+PM++
Sbjct: 231 RIGLPSMRALVTTLVQSQQYGTPITQSLRMLSRTERAMQMIALEEKAAKLAPKMTLPMML 290
Query: 305 FFLPVLILVIIGPAILSIIDTMK 327
F +P + L+ GPA++ +I
Sbjct: 291 FVMPTVALIAAGPAVIRLIAVFH 313
>gi|220922536|ref|YP_002497838.1| type II secretion system protein [Methylobacterium nodulans ORS
2060]
gi|219947143|gb|ACL57535.1| type II secretion system protein [Methylobacterium nodulans ORS
2060]
Length = 303
Score = 176 bits (447), Expect = 4e-42, Method: Composition-based stats.
Identities = 69/317 (21%), Positives = 131/317 (41%), Gaps = 26/317 (8%)
Query: 14 LAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLR 73
V+ +S+ +L Y G + +RM++ + + R
Sbjct: 8 WMVSAAVFLSVAALTYLSTTYVGQRGTVRQRMRA-------------------ARRTSER 48
Query: 74 TRDSKSLRNFVKKLNLKAILVDENIVNK---LRAAGFRSEYSLNILLVVRLVVPIIFLIL 130
+L + + I + L GF + ++ +L + I
Sbjct: 49 EHTPYLPAERKGRLEAIFGVNESTIQRQRLDLLRGGFFNPNAVEYFNFTKLTLVFALPIC 108
Query: 131 GIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLL 190
L V +L+ + P ++S + ++ + + A+PD LDLL
Sbjct: 109 ACAMFAFRSDLSSLTKFALVSGSLLLA---YYIPDAFVSRRQRLQKEAYRSAFPDMLDLL 165
Query: 191 LICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDC 250
++CV++G+S++ A RV ++ +S L + + +EL + R +D
Sbjct: 166 VVCVDAGLSLEAAFDRVGSEM-DESGALRVNLAIMASELRNGRGFVDGLQGLAERLDIDE 224
Query: 251 VRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVL 310
R+ L QS GT I SLRV E R++R+M AE+KA +L K+ +P+ F PV+
Sbjct: 225 ARSFAILLQQSLELGTDISQSLRVYSDEMRNKRMMRAEEKANALPVKIVLPLGAFIFPVI 284
Query: 311 ILVIIGPAILSIIDTMK 327
++V++ P ++ II +
Sbjct: 285 LIVVMVPIVIRIIAVLG 301
>gi|302037432|ref|YP_003797754.1| pilus assembly protein TadC [Candidatus Nitrospira defluvii]
gi|300605496|emb|CBK41829.1| Pilus assembly protein TadC [Candidatus Nitrospira defluvii]
Length = 318
Score = 176 bits (446), Expect = 4e-42, Method: Composition-based stats.
Identities = 75/285 (26%), Positives = 138/285 (48%), Gaps = 9/285 (3%)
Query: 48 VAVEREILR-KQQITSLQKDSASSRLRTRDSKSLRNFV-----KKLNLKAILVDENIVNK 101
VA R+I R ++++ ++ R + ++ ++ N
Sbjct: 31 VAEHRKISRWRRRVEGVRGAEERVAFLASLWNQGRRLLLICGRRRTGPTREGEPLSLPNP 90
Query: 102 LRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGF 161
AG R + +L ++ + + Y L P + + G+
Sbjct: 91 FATAGLRGSDLPVLFQGAKLFGAVVCPLTCL---SLYGLLANTPTFFPLILCMASALAGW 147
Query: 162 CAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEE 221
P +W+ ++ RQ +I A+PDALDL+++CVE+G+S+D A+ RV +++ LSEE
Sbjct: 148 YGPDLWLQRRIESRQRNILAAFPDALDLMVVCVEAGLSLDVAITRVGQELQLMHRELSEE 207
Query: 222 MLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRS 281
+ EL +RQ A N R Q++ V++ L+Q++R+GTS+G +LR R+
Sbjct: 208 LRALYLELRTGRSRQQALRNAGLRIQLEEVQSFVALLVQTERFGTSVGQALRAHADGLRT 267
Query: 282 ERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
+ ++A + AA L KL +P+I F P L++V++GPA + +I +
Sbjct: 268 RQDLQATEMAAKLPVKLLLPLIFFIFPSLLVVLLGPAAIQVIRQL 312
>gi|171320623|ref|ZP_02909643.1| type II secretion system protein [Burkholderia ambifaria MEX-5]
gi|171094136|gb|EDT39223.1| type II secretion system protein [Burkholderia ambifaria MEX-5]
Length = 314
Score = 176 bits (446), Expect = 5e-42, Method: Composition-based stats.
Identities = 81/290 (27%), Positives = 148/290 (51%), Gaps = 7/290 (2%)
Query: 38 SGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDEN 97
+ R++ A +R ++ +R ++ L ++L + +
Sbjct: 32 RRRIAARVQQAAGQR------SLSLAAGRLQPGEVRQDLTRRLAQLGERLPVLDPMQRVK 85
Query: 98 IVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIG 157
+ +L AGFR +++ ++ ++L ++F L I++ +L E+ F +R A++
Sbjct: 86 LGLQLTRAGFRERRAVSTMIGIKLSCGVLFAGLAIVFSPYIPRLGEF-FVIRAVAMVGAF 144
Query: 158 YVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVP 217
+G P + ++++R+ I +PDALDLL+IC +G S+ +RRVA ++ P
Sbjct: 145 VIGVIVPEYVLGAVIRRRRRIIAACFPDALDLLVICTMAGNSLASGVRRVARELERICPP 204
Query: 218 LSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVS 277
L++E+ + EL+ N A +F R R+ L QS R+GT I +LR L
Sbjct: 205 LADELTVCADELTLSGNVSEALAHFALRVNFSSARSLATTLTQSQRFGTPITQALRTLSR 264
Query: 278 ETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
R+E+++ E+KAA L PK+TVPM++F LP + L+ GPA + +I+ K
Sbjct: 265 SERTEQVVALEEKAAKLAPKITVPMMLFILPTVGLIAAGPAAIRLIEVFK 314
>gi|323493498|ref|ZP_08098620.1| Flp pilus assembly protein TadC [Vibrio brasiliensis LMG 20546]
gi|323312321|gb|EGA65463.1| Flp pilus assembly protein TadC [Vibrio brasiliensis LMG 20546]
Length = 284
Score = 176 bits (446), Expect = 5e-42, Method: Composition-based stats.
Identities = 60/245 (24%), Positives = 119/245 (48%), Gaps = 6/245 (2%)
Query: 84 VKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLE 143
+ + + KL G+ S + +I + +RLV + G+ W F L+
Sbjct: 45 ASRGGILRWPSNPQRARKLTMLGYHSPQAESIFMTLRLVSMVCG---GVAWFFYQQLSLD 101
Query: 144 YPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQA 203
+ AV +I + + V+ I + PDALDL+++CV SG S++
Sbjct: 102 ATGIAEIIAVAVITGIAI---DRAVDWRVKAVIHDIAKNIPDALDLMVVCVSSGQSLETT 158
Query: 204 LRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDR 263
V E++ S LS E L T E++ L + Q A N R ++ V N + Q+ +
Sbjct: 159 FNTVGEEMKTISQSLSREWLQTANEIAVLDSPQKALFNLDERLKLPEVNNMIVTMAQALK 218
Query: 264 YGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSII 323
+GT + ++L+++ S+ R +++E E+ + K++ P+++F + ++++I+ P +LS+
Sbjct: 219 FGTPMAEALKLIASDNRQYQMLELEEWVGKIPAKMSFPLVVFIMMPVVVIIVAPMVLSLF 278
Query: 324 DTMKD 328
T+
Sbjct: 279 QTIGQ 283
>gi|162147495|ref|YP_001601956.1| type II secretion system protein [Gluconacetobacter diazotrophicus
PAl 5]
gi|161786072|emb|CAP55654.1| putative type II secretion system protein [Gluconacetobacter
diazotrophicus PAl 5]
Length = 313
Score = 175 bits (445), Expect = 6e-42, Method: Composition-based stats.
Identities = 82/315 (26%), Positives = 154/315 (48%), Gaps = 14/315 (4%)
Query: 20 TAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKS 79
T + I +L+ + L RM+ R LR +Q+ L A++ +RT D +
Sbjct: 5 TMIMIAALLMTIGGIFSACYLLFSRMEQ--EGRRTLRLRQLHELSVGEANA-VRTIDGRI 61
Query: 80 LRNFVKKLNL---KAILVDENIVNKLRAA----GFRSEYSLNILLVVRLVVPIIFLILGI 132
F++++ + ++ L+ + +L+ F L + + + V ++ +++G
Sbjct: 62 WFRFLERIGVFFARSGLLSAKTLGELQQTLSSVSFLGTRFLPVFIGAKAVTLVVGIVVGW 121
Query: 133 IWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLI 192
+ + L + + VG AP + + ++ + PDALD+L+I
Sbjct: 122 L----IHEETRSDGMLYLVLSLGAPVVGLLAPDFVVKRMQAHYLRNVDQGIPDALDMLVI 177
Query: 193 CVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVR 252
C E+G+ I+ A+ RV ++ + ++ E LT E+ +R+ F +F RT + +R
Sbjct: 178 CAEAGLPIEAAIGRVGREMTAVNRSVANEFRLTAQEMGVASDRRDVFLHFGERTNLSSMR 237
Query: 253 NATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLIL 312
AL Q+ + G+S+ +LRVL E R + L E E +AA L LT+PMI+F LPV+ L
Sbjct: 238 RIGSALNQTLQAGSSVTQALRVLSVEMRKDALTEYEARAARLPVLLTLPMILFILPVVFL 297
Query: 313 VIIGPAILSIIDTMK 327
V+ GPA ++++ +
Sbjct: 298 VVGGPAAVTVMHALG 312
>gi|115358176|ref|YP_775314.1| type II secretion system protein [Burkholderia ambifaria AMMD]
gi|115283464|gb|ABI88980.1| type II secretion system protein [Burkholderia ambifaria AMMD]
Length = 314
Score = 175 bits (445), Expect = 6e-42, Method: Composition-based stats.
Identities = 83/302 (27%), Positives = 155/302 (51%), Gaps = 1/302 (0%)
Query: 26 SLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVK 85
L+ A V +L + R + A ++ ++ ++ +R ++ L +
Sbjct: 14 LLLIACVAAALATPGGGTRRRIAARVQQAAGQRSLSLAAGRLQPGEVRQDLTRRLAQLGE 73
Query: 86 KLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYP 145
+L + + + +L AGFR +++ ++ ++L ++F I++ +L E+
Sbjct: 74 RLPVLDPMQRVKLGLQLTRAGFRERRAVSAMIGIKLSCGVLFAGFAIVFSPYIPRLGEF- 132
Query: 146 FQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALR 205
F +R A++ +G P + ++++R+ +I +PDALDLL+IC +G S+ +R
Sbjct: 133 FVIRAVAMVGAFVIGVIVPEYVLGAMIRRRRRTIAACFPDALDLLVICTMAGNSLASGVR 192
Query: 206 RVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYG 265
RVA ++ PL++E+ + EL+ N A +F R R+ L QS R+G
Sbjct: 193 RVARELQRICPPLADELTVCADELTLSGNVSEALAHFALRVNFSSARSLATTLTQSQRFG 252
Query: 266 TSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDT 325
T I +LR L R+E+++ E+KAA L PK+TVPM++F LP + L+ GPA + +I+
Sbjct: 253 TPITQALRTLSRSERTEQVVALEEKAAKLAPKITVPMMLFILPTVGLIAAGPAAIRLIEV 312
Query: 326 MK 327
K
Sbjct: 313 FK 314
>gi|218708112|ref|YP_002415733.1| putative bacterial type II secretion system protein [Vibrio
splendidus LGP32]
gi|218321131|emb|CAV17081.1| putative bacterial type II secretion system protein, TadC-like
protein [Vibrio splendidus LGP32]
Length = 301
Score = 175 bits (445), Expect = 6e-42, Method: Composition-based stats.
Identities = 57/272 (20%), Positives = 123/272 (45%), Gaps = 9/272 (3%)
Query: 54 ILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSL 113
+K +I +L K + L ++ ++ + + +I + AG
Sbjct: 34 TQKKHRIAALAKHHRLADQSKEAEIKLNRWLTPMSTIFVTSESDIAVRFANAGVSDIRWA 93
Query: 114 NILLVVRLVVPIIF--LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNL 171
+ ++ I ++ G+ W F E + + V P + +S++
Sbjct: 94 QWFMPLKYSALFIGQVVVAGVCWFF------EVSSESWIAIAAGWAMVVIVMPDLVLSSM 147
Query: 172 VQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSF 231
+ RQ I R P +DL+ ICV++G++I+ +++ ++ ++ LS +L + +
Sbjct: 148 AKNRQRRISRQMPYLIDLMAICVQTGMTIEASMKYLSIEMKSFDKELSS-LLEVTNQRAR 206
Query: 232 LPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKA 291
L + A E Y + VR+ L QS ++G+SI + L L + R +++E E++
Sbjct: 207 LVGMENALEELYRKVPSPEVRSFVMTLTQSIQHGSSIYNVLTTLAGDIREVQMLELEEEI 266
Query: 292 ASLGPKLTVPMIIFFLPVLILVIIGPAILSII 323
L K+++P+I+F L ++ VI P ++ ++
Sbjct: 267 GKLAAKMSIPLIVFILIPIVFVIAAPGVMRMM 298
>gi|329905442|ref|ZP_08274132.1| Flp pilus assembly protein TadC [Oxalobacteraceae bacterium
IMCC9480]
gi|327547599|gb|EGF32397.1| Flp pilus assembly protein TadC [Oxalobacteraceae bacterium
IMCC9480]
Length = 312
Score = 175 bits (444), Expect = 7e-42, Method: Composition-based stats.
Identities = 55/241 (22%), Positives = 106/241 (43%), Gaps = 6/241 (2%)
Query: 89 LKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILG--IIWIFGYDKLLEYPF 146
L D+ ++R AG + + L RL+ + L ++ + ++ PF
Sbjct: 72 LGIASSDDKSWLRIRRAGLDYMLTPSQFLAARLLCMCLAAALCCWLLNTLAHVRVGAEPF 131
Query: 147 QLRV--GAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQAL 204
+ A + G+ P +W+ + + RQ I ++ P LD++ +CVE+G+++ AL
Sbjct: 132 SMAAYGQAALFGMLSGWFVPRLWLHDRIALRQREILKSLPFFLDIVTLCVEAGLNLQGAL 191
Query: 205 RRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRY 264
+ + G +E + ++ R A R + + + ++IQ++
Sbjct: 192 SQAVDK--GPPGAFRDECQRVLRDVRAGKARAEALRAMAERLREPGITSFVTSVIQAESM 249
Query: 265 GTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIID 324
G ++G LR + RSER AEKKA KL +P+I F P +V+ P ++ +
Sbjct: 250 GMNLGPVLRAQADQRRSERFQRAEKKALEAPVKLLLPLIAFIFPCTFIVLFFPIVMQFLH 309
Query: 325 T 325
Sbjct: 310 A 310
>gi|78062901|ref|YP_372809.1| type II secretion system protein [Burkholderia sp. 383]
gi|77970786|gb|ABB12165.1| type II secretion system protein [Burkholderia sp. 383]
Length = 314
Score = 175 bits (444), Expect = 7e-42, Method: Composition-based stats.
Identities = 75/284 (26%), Positives = 145/284 (51%), Gaps = 1/284 (0%)
Query: 44 RMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLR 103
R + A R+ + S+ +R ++ L ++L + + + +L
Sbjct: 32 RQRIAARVRQAAGQHPPASVAGWLQPGGVRLDLTRRLAQLGERLPVLDPMQRVKLGLQLT 91
Query: 104 AAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCA 163
AGFR ++++++ ++L ++F I++ + +Y F +R A+I +G
Sbjct: 92 RAGFRERRTVSVMIGIKLSCGVLFACGAIVFSPLIPRFGDY-FVIRALAMIAAFVIGVIV 150
Query: 164 PSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEML 223
P + ++++R+ I +PDALDLL+IC +G S+ +RRVA ++ PL++E+
Sbjct: 151 PEYVLGAMIRRRRRIIAACFPDALDLLVICTMAGNSLASGIRRVAHELARICPPLADELT 210
Query: 224 LTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSER 283
+ EL+ + +F R R+ L QS R+GT I +LR L R+E+
Sbjct: 211 VCADELTLSGDVAATLTHFAMRVDFTSARSLATTLTQSQRFGTPITQALRTLSRTERTEQ 270
Query: 284 LMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
++ E++AA L PK+T+PM++F LP + L+ GPA + +++ +
Sbjct: 271 IVALEERAAKLAPKITLPMMLFILPTVCLIAAGPAAIRLLEVFR 314
>gi|309778765|ref|ZP_07673538.1| type II secretion system protein [Ralstonia sp. 5_7_47FAA]
gi|308922473|gb|EFP68097.1| type II secretion system protein [Ralstonia sp. 5_7_47FAA]
Length = 329
Score = 175 bits (444), Expect = 8e-42, Method: Composition-based stats.
Identities = 45/269 (16%), Positives = 108/269 (40%), Gaps = 9/269 (3%)
Query: 60 ITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVV 119
+ +L+ + +K + ++ L +V E L G+ E++ +
Sbjct: 66 RPRPHGSREAQQLQQQIAKVGQRWIDT-GLGRRIVTEEDRKLLEECGYYGEHARTVFGGT 124
Query: 120 RLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSI 179
R+++P + + G + + +G+ AP + + R+ +
Sbjct: 125 RILLPPLLAVFGALHA--------SSVLFVFVFGFVGFALGYLAPKWLLGRRKESRRRRM 176
Query: 180 KRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAF 239
P +D+L + G+SIDQ+L+ +A + G L+ E + + R+
Sbjct: 177 DDELPVMVDMLRLLQGVGLSIDQSLQVIANEFHGMLPVLAGEFGRANQQFASGRPREQTL 236
Query: 240 ENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLT 299
+ ++ L Q DR+G ++ + LR + R +++ L ++T
Sbjct: 237 LRIARLFDNEDLKGLITLLTQVDRFGGAVQEPLRQFGGRLQENRRARLKERVGKLTVQMT 296
Query: 300 VPMIIFFLPVLILVIIGPAILSIIDTMKD 328
+ M++ LP L+++ GP + ++ +++
Sbjct: 297 MIMVMTLLPALLIITAGPGFMGVMRSLQQ 325
>gi|319782178|ref|YP_004141654.1| type II secretion system F domain [Mesorhizobium ciceri biovar
biserrulae WSM1271]
gi|317168066|gb|ADV11604.1| Type II secretion system F domain [Mesorhizobium ciceri biovar
biserrulae WSM1271]
Length = 316
Score = 175 bits (444), Expect = 9e-42, Method: Composition-based stats.
Identities = 69/318 (21%), Positives = 138/318 (43%), Gaps = 7/318 (2%)
Query: 5 FFDLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQ 64
F V+I AV + ++ + + + L+ R K VA ++ +
Sbjct: 1 MFSNIQDLGFLVSI--AVFVAAVSFFLFGALVFLPALQTR-KLVAQ--SLMGEGITDRRS 55
Query: 65 KDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVP 124
+ + + + K + K + KL AGF + I + RLV
Sbjct: 56 MLGQDQLAKLAAQRPVDAYFKSIE-KEREEPNALEAKLFRAGFYQSTAPLIYTLSRLV-A 113
Query: 125 IIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWP 184
+ L + + P + + L G PS+ + ++ +RA+P
Sbjct: 114 VCLGFLAMYALLSRVLPPHLPGFITLAGSALFGLACMVIPSILLDRFENSQKQIYRRAFP 173
Query: 185 DALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYN 244
D +D+++ C ++G+S++ A+ RV+ ++ L ++ + +L + A +
Sbjct: 174 DFMDMMITCADAGMSLEGAVERVSHEMAATHKWLGIQLSIMNLQLRAGKPLREALRELAD 233
Query: 245 RTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMII 304
R +D R QS+ GTS+ D+LRV +E R +R++ AE++A SL K+ +P+ +
Sbjct: 234 RIGLDEARALAVLFRQSEELGTSLTDALRVYSAEMRGQRILSAEERANSLPVKMMIPLGL 293
Query: 305 FFLPVLILVIIGPAILSI 322
PV+++VI+ P I+ +
Sbjct: 294 CIFPVVMMVIMLPVIIRM 311
>gi|269105136|ref|ZP_06157830.1| type II/IV secretion system protein TadC associated with Flp pilus
assembly [Photobacterium damselae subsp. damselae CIP
102761]
gi|268160586|gb|EEZ39085.1| type II/IV secretion system protein TadC associated with Flp pilus
assembly [Photobacterium damselae subsp. damselae CIP
102761]
Length = 293
Score = 175 bits (444), Expect = 9e-42, Method: Composition-based stats.
Identities = 51/230 (22%), Positives = 115/230 (50%), Gaps = 6/230 (2%)
Query: 96 ENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVIL 155
+ I K +AGF + + ++ ++ +I G I+ F + + P + + V +
Sbjct: 69 KEIDKKFYSAGFYDFKYAYLYMPIKYLLVLIGS--GSIYWFS-KGIFDNPTMMAIICVWV 125
Query: 156 IGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQS 215
+ + P + ++ + + I P LDLL +CV++G++I+ ++ ++ ++ G
Sbjct: 126 V--LCISMPDIVLAQKSKTLRHKISGQLPYLLDLLAMCVQTGMTIESSMSYLSREMKGFD 183
Query: 216 VPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVL 275
LS + T + + + + A + Y R + +R+ + QS +YG+SI + L L
Sbjct: 184 RDLSHLLTRTN-DRARIIGLEQALDELYIRVPTNEMRSFVMTIKQSLQYGSSIYNILTTL 242
Query: 276 VSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDT 325
++ R R++ E+K L K+++P+I+F L ++++I P +L ++
Sbjct: 243 AADIRDMRMLTLEEKIGKLAAKMSIPLILFILIPIVILIAAPGVLRMLQN 292
>gi|258620798|ref|ZP_05715833.1| Flp pilus assembly protein TadC [Vibrio mimicus VM573]
gi|258624768|ref|ZP_05719699.1| Flp pilus assembly protein TadC [Vibrio mimicus VM603]
gi|262173889|ref|ZP_06041566.1| type II/IV secretion system protein TadC associated with Flp pilus
assembly [Vibrio mimicus MB-451]
gi|258582930|gb|EEW07748.1| Flp pilus assembly protein TadC [Vibrio mimicus VM603]
gi|258586996|gb|EEW11710.1| Flp pilus assembly protein TadC [Vibrio mimicus VM573]
gi|261891247|gb|EEY37234.1| type II/IV secretion system protein TadC associated with Flp pilus
assembly [Vibrio mimicus MB-451]
Length = 291
Score = 175 bits (444), Expect = 9e-42, Method: Composition-based stats.
Identities = 61/251 (24%), Positives = 114/251 (45%), Gaps = 5/251 (1%)
Query: 74 TRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGII 133
TR+ K+ FV L + KL AG +++ + +++ P I
Sbjct: 44 TREEKNRFEFVYSLLNMVSFNQDETKKKLVKAGIYNQFIARSYYLFKII-PFGLCAFFSI 102
Query: 134 WIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLIC 193
F K E + + ++ +G P ++I+ +K I P LDL+ +C
Sbjct: 103 LAFLSGKTDETMLVVSLAIGAIVFLLG---PDMYIAARGKKITKKISSRLPFLLDLMNVC 159
Query: 194 VESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRN 253
V +G++I+ L +A ++ L+ + T+ E S L + A FY+ ++
Sbjct: 160 VHTGMTIEACLEYLAFELRTVDHHLAYVVKKTV-ERSKLVGLEKALNEFYDLVPTAEAQS 218
Query: 254 ATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILV 313
+ QS +YG+SIG L L S+ R +M+ E+K +G K+++P+I F + +I++
Sbjct: 219 FVMTMTQSLKYGSSIGPVLATLASDIREMNMMDLEEKIGKMGAKMSIPLIAFIMVPIIIL 278
Query: 314 IIGPAILSIID 324
I P I+ +
Sbjct: 279 IAAPGIMRMFS 289
>gi|209545602|ref|YP_002277831.1| type II secretion system protein [Gluconacetobacter diazotrophicus
PAl 5]
gi|209533279|gb|ACI53216.1| type II secretion system protein [Gluconacetobacter diazotrophicus
PAl 5]
Length = 313
Score = 175 bits (444), Expect = 9e-42, Method: Composition-based stats.
Identities = 82/315 (26%), Positives = 154/315 (48%), Gaps = 14/315 (4%)
Query: 20 TAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKS 79
T + I +L+ + L RM+ R LR +Q+ L A++ +RT D +
Sbjct: 5 TMIMIAALLMTIGGIFSACYLLFSRMEQ--EGRRTLRLRQLHELSVGEANA-VRTIDGRI 61
Query: 80 LRNFVKKLNL---KAILVDENIVNKLRAA----GFRSEYSLNILLVVRLVVPIIFLILGI 132
F++++ + ++ L+ + +L+ F L + + + V ++ +++G
Sbjct: 62 WFRFLERIGVFFARSGLLSAKTLGELQQTLSSVSFLGTRFLPVFIGAKAVTLVVGIVVGW 121
Query: 133 IWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLI 192
+ + L + + VG AP + + ++ + PDALD+L+I
Sbjct: 122 L----IHEETRSDGMLYLVLSLGAPMVGLLAPDFIVKRMQAHYLRNVDQGIPDALDMLVI 177
Query: 193 CVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVR 252
C E+G+ I+ A+ RV ++ + ++ E LT E+ +R+ F +F RT + +R
Sbjct: 178 CAEAGLPIEAAIGRVGREMTAVNRSVANEFRLTAQEMGVASDRRDVFLHFGERTNLSSMR 237
Query: 253 NATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLIL 312
AL Q+ + G+S+ +LRVL E R + L E E +AA L LT+PMI+F LPV+ L
Sbjct: 238 RIGSALNQTLQAGSSVTQALRVLSVEMRKDALTEYEARAARLPVLLTLPMILFILPVVFL 297
Query: 313 VIIGPAILSIIDTMK 327
V+ GPA ++++ +
Sbjct: 298 VVGGPAAVTVMHALG 312
>gi|325964126|ref|YP_004242032.1| Flp pilus assembly protein TadC [Arthrobacter phenanthrenivorans
Sphe3]
gi|323470213|gb|ADX73898.1| Flp pilus assembly protein TadC [Arthrobacter phenanthrenivorans
Sphe3]
Length = 294
Score = 175 bits (443), Expect = 1e-41, Method: Composition-based stats.
Identities = 64/232 (27%), Positives = 117/232 (50%), Gaps = 9/232 (3%)
Query: 98 IVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIG 157
+ L AG L +L +L + + L++G+ L A + +
Sbjct: 72 LDRLLSLAGRPLSMPLGKVLGTKLALGLTGLVVGLYMTAV------GTTPLMKLAGLFVL 125
Query: 158 YVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVP 217
++G+ P + + + ++RQ I+ + LD +LI VE+G+ + A+ R E+ G P
Sbjct: 126 FMGYFIPDLLLYSKGKERQKVIQLELANTLDQMLISVEAGLGFEGAMARAGENGKG---P 182
Query: 218 LSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVS 277
L+EE++ T+ ++ +R+ A+ RT + +R+ QA+IQ+D YG +I LRV
Sbjct: 183 LAEELVRTLQDMQVGRSRREAYLALAERTSIPELRSFVQAIIQADTYGIAISRVLRVQAK 242
Query: 278 ETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMKDH 329
R +R AE+KA L + P++ F PVL + I+GPA+++ + T+
Sbjct: 243 VMRMKRRQRAEEKAMKLPVMILFPLLFFIFPVLFIAILGPAVINTVVTLSGQ 294
>gi|167589644|ref|ZP_02382032.1| type II secretion system protein [Burkholderia ubonensis Bu]
Length = 264
Score = 175 bits (443), Expect = 1e-41, Method: Composition-based stats.
Identities = 73/260 (28%), Positives = 139/260 (53%), Gaps = 1/260 (0%)
Query: 68 ASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIF 127
+R ++ L ++L + + + +L AGFR +++ ++ ++L V ++F
Sbjct: 6 QPGDVRQDVTRRLAQLGERLPVLDPMQRVKLGLQLTRAGFRERRAVSSMIGIKLSVGVLF 65
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
+ I++ +L EY F +R A++ +G P + ++++R+ I PDAL
Sbjct: 66 ACVAIVFSPYIPRLGEY-FVIRALAMVAAFVIGVIVPEYVLGAMIRRRRRIIAGCLPDAL 124
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQ 247
DLL+IC +G S+ +RRVA ++ PL++E+ + EL+ + +F R
Sbjct: 125 DLLVICTMAGNSLASGVRRVAHELARICPPLADELSVCADELTLSGDVAATLTHFATRVD 184
Query: 248 MDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFL 307
+ R+ L QS R+GT I +LR L R+E+++ E++AA L PK+T+PM++F L
Sbjct: 185 LPSARSLATTLTQSQRFGTPITQALRTLARTERTEQIVALEERAAKLAPKITLPMMLFIL 244
Query: 308 PVLILVIIGPAILSIIDTMK 327
P + L+ GPA + +++ +
Sbjct: 245 PTVCLIAAGPAAIRLLEVFR 264
>gi|312621086|ref|YP_003993814.1| type ii/iv secretion system protein tadc,associated with flp pilus
assembly [Photobacterium damselae subsp. damselae]
gi|311872807|emb|CBX86898.1| Type II/IV secretion system protein TadC,associated with Flp pilus
assembly [Photobacterium damselae subsp. damselae]
Length = 303
Score = 175 bits (443), Expect = 1e-41, Method: Composition-based stats.
Identities = 51/230 (22%), Positives = 115/230 (50%), Gaps = 6/230 (2%)
Query: 96 ENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVIL 155
+ I K +AGF + + ++ ++ +I G I+ F + + P + + V +
Sbjct: 79 KEIDKKFYSAGFYDFKYAYLYMPIKYLLVLIGS--GSIYWFS-KGIFDNPTMMAIICVWV 135
Query: 156 IGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQS 215
+ + P + ++ + + I P LDLL +CV++G++I+ ++ ++ ++ G
Sbjct: 136 V--LCISMPDIVLAQKSKTLRHKISGQLPYLLDLLAMCVQTGMTIESSMSYLSREMKGFD 193
Query: 216 VPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVL 275
LS + T + + + + A + Y R + +R+ + QS +YG+SI + L L
Sbjct: 194 RDLSHLLTRTN-DRARIIGLEQALDELYIRVPTNEMRSFVMTIKQSLQYGSSIYNILTTL 252
Query: 276 VSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDT 325
++ R R++ E+K L K+++P+I+F L ++++I P +L ++
Sbjct: 253 AADIRDMRMLTLEEKIGKLAAKMSIPLILFILIPIVILIAAPGVLRMLQN 302
>gi|86147189|ref|ZP_01065505.1| bipartite nuclear localization signal containing protein, TadC-like
protein [Vibrio sp. MED222]
gi|85835073|gb|EAQ53215.1| bipartite nuclear localization signal containing protein, TadC-like
protein [Vibrio sp. MED222]
Length = 301
Score = 174 bits (442), Expect = 1e-41, Method: Composition-based stats.
Identities = 56/270 (20%), Positives = 124/270 (45%), Gaps = 5/270 (1%)
Query: 54 ILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSL 113
+K +I +L K + L ++ ++ + + +I + AG
Sbjct: 34 TQKKHRIAALAKHHRLADQSKEAEIKLNRWLTPMSTIFVTSESDITVRFANAGVSDIRWA 93
Query: 114 NILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQ 173
+ ++ L +G + + G +E + + V P + +S++ +
Sbjct: 94 QWFMPLKYSA----LFIGQVVVAGVCWFIEVSSESWIAIAAGWAMVVIVMPDLVLSSMAK 149
Query: 174 KRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLP 233
RQ I R P +DL+ ICV++G++I+ +++ ++ ++ LS + +T + + L
Sbjct: 150 NRQRRISRQMPYLIDLMAICVQTGMTIEASMKYLSIEMKSFDKELSSLLEVTN-QRARLV 208
Query: 234 NRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAAS 293
+ A E Y + VR+ L QS ++G+SI + L L + R +++E E++
Sbjct: 209 GMENALEELYRKVPSPEVRSFVMTLTQSIQHGSSIYNVLTTLAGDIREVQMLELEEEIGK 268
Query: 294 LGPKLTVPMIIFFLPVLILVIIGPAILSII 323
L K+++P+I+F L ++ VI P ++ ++
Sbjct: 269 LAAKMSIPLIVFILIPIVFVIAAPGVMRMM 298
>gi|147677788|ref|YP_001212003.1| flp pilus assembly protein TadC [Pelotomaculum thermopropionicum
SI]
gi|146273885|dbj|BAF59634.1| flp pilus assembly protein TadC [Pelotomaculum thermopropionicum
SI]
Length = 307
Score = 174 bits (442), Expect = 1e-41, Method: Composition-based stats.
Identities = 74/316 (23%), Positives = 135/316 (42%), Gaps = 14/316 (4%)
Query: 15 AVAITTAVSIFSLIYAVV-IPSLGSGELEKRMKSVAVER-EILRKQQITSLQKDSASSRL 72
+A+ +F +I + I S E+E R+ V R LR+Q++ + L
Sbjct: 4 LIAVFIFTEVFLVILLLYNIISKERQEVESRVAKVVGSRTPTLREQELKAPLFQRIIKPL 63
Query: 73 RTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGI 132
R S + + + + K+ AG + + LL + +
Sbjct: 64 LARLSLFMVKMLP------AEKEAELAGKISRAGLSQKITPRELLAL---KYLAAAGTAT 114
Query: 133 IWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLI 192
+ + + +G+ P + ++ + R+ I+++ PD +DLL +
Sbjct: 115 TLLITGKIMAGRSLFQIILLGTAGLALGWFVPELLLNKKILDRKKEIEKSLPDVMDLLTV 174
Query: 193 CVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVR 252
VE+G+S D AL +V E G LSEE + E+ R A + R +D +
Sbjct: 175 SVEAGLSFDGALMKVTEKKRG---VLSEEFTKMLQEIKIGRPRLEALRDLSRRLDVDDLS 231
Query: 253 NATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLIL 312
A+I +D+ G SIG+ LRV + R +R AE+ A K+ +PM++F P + +
Sbjct: 232 AFAGAVILADQLGISIGNILRVQSDQIRMKRRQAAEEMAMKAPVKMLIPMVLFIFPAIFV 291
Query: 313 VIIGPAILSIIDTMKD 328
V++GPA++ I +
Sbjct: 292 VLLGPAVIQISKAFSN 307
>gi|254486463|ref|ZP_05099668.1| type II secretion system protein [Roseobacter sp. GAI101]
gi|214043332|gb|EEB83970.1| type II secretion system protein [Roseobacter sp. GAI101]
Length = 320
Score = 174 bits (442), Expect = 1e-41, Method: Composition-based stats.
Identities = 78/316 (24%), Positives = 145/316 (45%), Gaps = 2/316 (0%)
Query: 11 ATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASS 70
+ + +S L V++ L A R + +
Sbjct: 5 SLHIFWMAFAGLSTAMLALTVLLYLERQRSLRDARLRRANGTSQPRP-TLDNATSPGMVG 63
Query: 71 RLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLIL 130
L + ++ ++L++ L +AG+RS +L I ++ VVP+ L+
Sbjct: 64 SLARQVRHTVATIGQRLSVVLGGEARETAADLASAGYRSRDALLIYAFLKTVVPMAALMA 123
Query: 131 GIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLL 190
G++W+ G + + VI +++ + R I+ ++PD L+L+
Sbjct: 124 GLVWL-GLTTPVGIDMLIPAAMVIGTALALSKGVDMYVDLRRKNRLGRIRHSFPDMLELI 182
Query: 191 LICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDC 250
+I E+G+ AL RVA+++ L+ EML ++E++ + + A+ R +
Sbjct: 183 VITSEAGLGPQPALHRVAQEMSLSHPELAREMLQMVSEMAMTNDCRGAYAKMNLRVPLPE 242
Query: 251 VRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVL 310
+ TQ L QSDRYGT ++R L+ E R RLM E+KAA L +T+P+I +P +
Sbjct: 243 IGIFTQTLDQSDRYGTPFSRAMRTLIIEQRGNRLMAIEEKAARLPVLMTLPLIFCIMPAV 302
Query: 311 ILVIIGPAILSIIDTM 326
+V++GPA+LS++D +
Sbjct: 303 FVVLVGPAVLSVLDNI 318
>gi|149178503|ref|ZP_01857091.1| type II secretion system protein [Planctomyces maris DSM 8797]
gi|148842618|gb|EDL56993.1| type II secretion system protein [Planctomyces maris DSM 8797]
Length = 334
Score = 174 bits (442), Expect = 2e-41, Method: Composition-based stats.
Identities = 58/279 (20%), Positives = 116/279 (41%), Gaps = 7/279 (2%)
Query: 53 EILRKQQITSLQKDSASSRL-----RTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGF 107
+ + T K+S +T + + ++ I L+ AG+
Sbjct: 23 DAISAGHRTGRNKNSKYDERGANYYKTSKVGVFSRALAGVIPQSSQEISKIELDLKRAGY 82
Query: 108 RSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVW 167
+L L R ++ ++ LI + D P ++ + A +LI G+ P +
Sbjct: 83 YRSTALVEYLATRNMLVVLVLIGTGVGCVLADPGSNLP-EIILIAGLLIAGAGYGLPRIV 141
Query: 168 ISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIA 227
+ N +R I+R PDALDL+++C+ G+ + AL RV +++ ++ E +
Sbjct: 142 LQNQANRRVHRIQRGLPDALDLVMMCLTGGVPLRTALERVTDEVRFSHPDIAVEFEIIRR 201
Query: 228 ELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEA 287
+ A + F R V + + Q++R GT++ +L R + A
Sbjct: 202 HADA-NSMADALKQFAKRIDAPDVNALSLMISQTERLGTNVSTALIDFADGVRRKYRQRA 260
Query: 288 EKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
E+ ++ KL P+I P + ++ GPA+L + + +
Sbjct: 261 EENSSKTSIKLLFPIIFCMAPPIYILFFGPAVLELRNFL 299
>gi|172062964|ref|YP_001810615.1| type II secretion system protein [Burkholderia ambifaria MC40-6]
gi|171995481|gb|ACB66399.1| type II secretion system protein [Burkholderia ambifaria MC40-6]
Length = 314
Score = 174 bits (441), Expect = 2e-41, Method: Composition-based stats.
Identities = 80/290 (27%), Positives = 147/290 (50%), Gaps = 7/290 (2%)
Query: 38 SGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDEN 97
+ R++ A +R ++ +R ++ L ++L + +
Sbjct: 32 RRRIAARVQQAAGQR------SLSLAAGRLQPGEVRQDLTRRLAQLGERLPVLDPMQRVK 85
Query: 98 IVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIG 157
+ +L AGFR +++ ++ ++L ++F I++ +L E+ F +R A++
Sbjct: 86 LGLQLTRAGFRERRAVSAMIGIKLSCGVLFAGFAIVFSPYIPRLGEF-FVIRAVAMVGAF 144
Query: 158 YVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVP 217
+G P + ++++R+ I +PDALDLL+IC +G S+ +RRVA ++ P
Sbjct: 145 VIGVIVPEYVLGAMIRRRRRIIAACFPDALDLLVICTMAGNSLASGVRRVARELERICPP 204
Query: 218 LSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVS 277
L++E+ + EL+ N A +F R R+ L QS R+GT I +LR L
Sbjct: 205 LADELTVCADELTLSGNVSEALAHFALRVNFSSARSLATTLTQSQRFGTPITQALRTLSR 264
Query: 278 ETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
R+E+++ E+KAA L PK+TVPM++F LP + L+ GPA + +I+ K
Sbjct: 265 SERTEQVVALEEKAAKLAPKITVPMMLFILPTVGLIAAGPAAIRLIEVFK 314
>gi|144897440|emb|CAM74304.1| Flp pilus assembly protein TadC [Magnetospirillum gryphiswaldense
MSR-1]
Length = 199
Score = 174 bits (441), Expect = 2e-41, Method: Composition-based stats.
Identities = 73/151 (48%), Positives = 109/151 (72%)
Query: 177 SSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQ 236
++ R +PDALDL++ICVE+G+S++ AL +V +++ + L+EE+ LT AEL+FL +R+
Sbjct: 49 QALARGFPDALDLMVICVEAGLSVEAALLKVTDEMANSAPELAEEIGLTAAELAFLGDRR 108
Query: 237 VAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGP 296
A++N RT + V++ + AL+QS++YGT + +LRVL E R R+ AEKKAASL
Sbjct: 109 QAWDNLAERTGLAQVKSLSTALVQSEKYGTPVAQALRVLSQENRETRMAAAEKKAASLPA 168
Query: 297 KLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
KLTVPMI+FFLPVL +VI GPA + ++ K
Sbjct: 169 KLTVPMIVFFLPVLFIVIAGPAAIQVMAAWK 199
>gi|187926431|ref|YP_001892776.1| type II secretion system protein [Ralstonia pickettii 12J]
gi|241665918|ref|YP_002984277.1| type II secretion system protein [Ralstonia pickettii 12D]
gi|187728185|gb|ACD29349.1| type II secretion system protein [Ralstonia pickettii 12J]
gi|240867945|gb|ACS65605.1| type II secretion system protein [Ralstonia pickettii 12D]
Length = 329
Score = 174 bits (441), Expect = 2e-41, Method: Composition-based stats.
Identities = 45/269 (16%), Positives = 109/269 (40%), Gaps = 9/269 (3%)
Query: 60 ITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVV 119
+ +L+ + +K + ++ L +V E L G+ E++ +
Sbjct: 66 RPRPHGSREAQQLQQQIAKVGQRWIDT-GLGRRIVTEEDRKLLEECGYYGEHARTVFGGT 124
Query: 120 RLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSI 179
R+++P + + G + + +G+ AP + + R+ +
Sbjct: 125 RILLPPLLAVFGALHA--------SSALFVFVFGFVGFALGYLAPKWLLGRRKESRRRRM 176
Query: 180 KRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAF 239
P +D+L + G+SIDQ+L+ +A + G L+ E + + +R+
Sbjct: 177 DDELPVMVDMLRLLQGVGLSIDQSLQVIANEFHGMLPVLAGEFGRANQQFASGRSREQTL 236
Query: 240 ENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLT 299
+ ++ L Q DR+G ++ + LR + R +++ L ++T
Sbjct: 237 LRIARLFDNEDLKGLITLLTQVDRFGGAVQEPLRQFGGRLQENRRARLKERVGKLTVQMT 296
Query: 300 VPMIIFFLPVLILVIIGPAILSIIDTMKD 328
+ M++ LP L+++ GP + ++ +++
Sbjct: 297 MIMVMTLLPALLIITAGPGFMGVMRSLQQ 325
>gi|159901127|ref|YP_001547374.1| type II secretion system protein [Herpetosiphon aurantiacus ATCC
23779]
gi|159894166|gb|ABX07246.1| type II secretion system protein [Herpetosiphon aurantiacus ATCC
23779]
Length = 301
Score = 174 bits (441), Expect = 2e-41, Method: Composition-based stats.
Identities = 74/311 (23%), Positives = 139/311 (44%), Gaps = 15/311 (4%)
Query: 13 ELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRL 72
L + + V +F + + V+ + + R+ L ++ +
Sbjct: 2 PLLIGLVVLVIVFGVGFMVLNQRRQTDTVSSRLAQFTERSMNLEDLELQ-------LPFM 54
Query: 73 RTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGI 132
+ + L N KL ++ ++ + N L AG + + +R+ + + +
Sbjct: 55 QRVVTPMLNNVFVKLG-QSGKGNDKLRNNLMLAGNPGNLTPTMFTGMRIFMALALFGV-- 111
Query: 133 IWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLI 192
IF L + + + G +GF P++W+ ++KRQ I +A PDALDLL I
Sbjct: 112 --IFLICMLAKVQTLSAIQWSGVGGALGFLLPAMWLGRQIKKRQKLILKALPDALDLLSI 169
Query: 193 CVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVR 252
V +G+ D AL+RVAE L E ++++ R AF + RT ++ +
Sbjct: 170 SVTAGLGFDAALQRVAEKWDN---ELCREFRRALSDIRLGTQRHEAFRSMTVRTGVEDLT 226
Query: 253 NATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLIL 312
+ A+IQ+D+ G S+G L++ + R R AE++A K+ P++ P + +
Sbjct: 227 SFVSAVIQADQLGVSMGKMLKIQSDQLRLRRRQRAEEEAQKAPIKMLFPLVFLIFPSMFV 286
Query: 313 VIIGPAILSII 323
VI+GPAI ++
Sbjct: 287 VILGPAIPRLL 297
>gi|107022598|ref|YP_620925.1| type II secretion system protein [Burkholderia cenocepacia AU 1054]
gi|105892787|gb|ABF75952.1| type II secretion system protein [Burkholderia cenocepacia AU 1054]
Length = 321
Score = 174 bits (441), Expect = 2e-41, Method: Composition-based stats.
Identities = 55/257 (21%), Positives = 112/257 (43%), Gaps = 6/257 (2%)
Query: 70 SRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLI 129
+RLR R ++ L+ + L GF + + + R+V I+
Sbjct: 66 ARLRERFEDVGMRWLDT-GFSRYLIADEDRRLLEQCGFVDVRARALFVGARIVCAILLPA 124
Query: 130 LGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDL 189
L ++ + G + +P L + V G+ P +++ R+ S+ P +D+
Sbjct: 125 LAVLVLIGRGQQARWPLWLSIALV-----TGYMLPKIYVRRRATARRQSLAAELPLLVDM 179
Query: 190 LLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMD 249
L + G+S+DQ+++ V D LS E+ + + + R+ + + N +
Sbjct: 180 LRLLQGVGLSLDQSIQVVTHDFQTMLPVLSWELGVAQRQFAAGRTREQSLQRLTNSFDNE 239
Query: 250 CVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPV 309
+R + LIQ D++G ++ + L+ R R ++ L K+T MI+ LP
Sbjct: 240 DLRAIVRLLIQVDKHGGAVQEPLKQFGDRLREGRRATLREQIGRLTVKMTGVMIVTLLPA 299
Query: 310 LILVIIGPAILSIIDTM 326
L++V GP I++++ +
Sbjct: 300 LLIVTAGPGIMTVLSAL 316
>gi|330816719|ref|YP_004360424.1| Type II secretion system protein [Burkholderia gladioli BSR3]
gi|327369112|gb|AEA60468.1| Type II secretion system protein [Burkholderia gladioli BSR3]
Length = 329
Score = 174 bits (441), Expect = 2e-41, Method: Composition-based stats.
Identities = 56/290 (19%), Positives = 123/290 (42%), Gaps = 8/290 (2%)
Query: 41 LEKRMKSVAVEREILRKQQITSLQKDSASSRL--RTRDSKSLRNFVKKLNLKAILVDENI 98
L++R+++ +Q ++ AS RTR + ++ L LV +
Sbjct: 43 LDQRVEAGRAAASRAGQQAQAKPRETPASGLAAWRTRAEQIGMRWLDS-GLGKQLVADED 101
Query: 99 VNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGY 158
L G+ + + L R++ + + ++ L+ + +
Sbjct: 102 RQFLEQCGYVEARARGLFLFSRVLCASVLPLAVLMI-----SLVRGSGGKSLIYIAFAIA 156
Query: 159 VGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPL 218
+GF P ++I R+ S+ P +D+L + G+S+DQ+++ ++ D L
Sbjct: 157 IGFMLPKLYIRRKAAARRESVAEEMPLFVDMLRLLQGVGLSLDQSMQVISHDFTTMLPVL 216
Query: 219 SEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSE 278
S E+ + + + R+ + + + +R+ + LIQ D++G ++ + LR+
Sbjct: 217 SWELGVAQRQFAAGRTREQSLARLTSSFDNEDLRSIVRLLIQVDKHGGAVQEPLRMFGDR 276
Query: 279 TRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMKD 328
R R ++ L K+T MI+ LP L++V GP I++++ +
Sbjct: 277 LRDGRRALLRERIGRLTVKMTGVMIVTLLPALLIVTAGPGIMTVVSALSQ 326
>gi|206559898|ref|YP_002230662.1| flp type pilus assembly protein [Burkholderia cenocepacia J2315]
gi|198035939|emb|CAR51831.1| flp type pilus assembly protein [Burkholderia cenocepacia J2315]
Length = 332
Score = 173 bits (440), Expect = 2e-41, Method: Composition-based stats.
Identities = 55/268 (20%), Positives = 113/268 (42%), Gaps = 6/268 (2%)
Query: 59 QITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLV 118
+ + LR R +++ L+ + L GF + + +
Sbjct: 66 AVAPAAPRVRFAGLRARFEDVGMRWLET-GFSRYLIADEDRQLLEQCGFVDVRARALFVG 124
Query: 119 VRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSS 178
R+V I+ L ++ + G + +P + V V G+ P +++ R+ S
Sbjct: 125 ARIVCAILLPALAVLVLIGRGQQTRWPLWISVALV-----TGYMLPKIYVRRRATARRQS 179
Query: 179 IKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVA 238
I P +D+L + G+S+DQ+++ V D LS E+ + + + R+ +
Sbjct: 180 IAAELPLLVDMLRLLQGVGLSLDQSIQVVTHDFQTMLPVLSWELGVAQRQFAAGRTREQS 239
Query: 239 FENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKL 298
+ N + +R + LIQ D++G ++ + L+ R R ++ L K+
Sbjct: 240 LQRLTNSFDNEDLRAIVRLLIQVDKHGGAVQEPLKQFGDRLREGRRATLREQIGRLTVKM 299
Query: 299 TVPMIIFFLPVLILVIIGPAILSIIDTM 326
T MI+ LP L++V GP I++++ +
Sbjct: 300 TGVMIVTLLPALLIVTAGPGIMTVLAAL 327
>gi|261820219|ref|YP_003258325.1| type II secretion system F domain protein [Pectobacterium wasabiae
WPP163]
gi|261604232|gb|ACX86718.1| Type II secretion system F domain protein [Pectobacterium wasabiae
WPP163]
Length = 319
Score = 173 bits (440), Expect = 2e-41, Method: Composition-based stats.
Identities = 63/222 (28%), Positives = 120/222 (54%), Gaps = 3/222 (1%)
Query: 105 AGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAP 164
AG R ++ L++ + + I + +G+ + V A ++ +VG P
Sbjct: 99 AGLRRNEAVGWLVMGKFAAGALLAIALV---WGWLPPADRAGLTGVAAGLIGFFVGSMVP 155
Query: 165 SVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLL 224
W+ R + RA PDALDL+++C E+G+ I + L+ V++++G S +++E+
Sbjct: 156 EWWLKWRAASRGEKLARAVPDALDLMVVCAEAGLPIGRVLQVVSKELGLSSPEMADELHY 215
Query: 225 TIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERL 284
T AEL L +R +A + RT++ + + LIQ++RYGT + +LR + E+R +
Sbjct: 216 TAAELQILSDRTLAMRHLAERTRVSEIESMVATLIQAERYGTPLSQALRTIADESRKTLI 275
Query: 285 MEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
+ E+KA L +L+VP++ LP +I ++ PA++ +I +
Sbjct: 276 LGLEEKAGKLPAQLSVPLMALILPPIIAIMASPALVRVIRLL 317
>gi|260462613|ref|ZP_05810819.1| type II secretion system protein [Mesorhizobium opportunistum
WSM2075]
gi|259031519|gb|EEW32789.1| type II secretion system protein [Mesorhizobium opportunistum
WSM2075]
Length = 321
Score = 173 bits (440), Expect = 2e-41, Method: Composition-based stats.
Identities = 60/272 (22%), Positives = 120/272 (44%), Gaps = 2/272 (0%)
Query: 51 EREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSE 110
E+ +L + + R + + + + L K + KL AGF
Sbjct: 47 EQSLLSEGITNRRSLYAQQELNRISAKRPVDAYFRTLE-KERGEPNALEAKLFRAGFYQA 105
Query: 111 YSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISN 170
+ I + RL + LG + + P LIG PS+ +
Sbjct: 106 SAPTIYTLTRLGAVCVGF-LGTYAVLTAVLPPQVPGFAAFAGAALIGLGCLVIPSIALDR 164
Query: 171 LVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELS 230
++ +R +PD +D+++ C ++G+S++ A+ RV ++ G L ++ + +L
Sbjct: 165 FENGQKRIYRRGFPDFMDMMITCADAGMSLEAAVERVGAELAGTHKWLGIQLSIMTLQLR 224
Query: 231 FLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKK 290
+ A +R ++ R QS+ GTS+ D+LR+ E R +R++ AE++
Sbjct: 225 AGKPLREALRELADRIGLEEARALAVLFRQSEELGTSLTDALRIYSDEMRGQRILHAEER 284
Query: 291 AASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
A +L K+ +P+ + PV+++VI+ P I+ +
Sbjct: 285 ANALPVKMMIPLGLCIFPVVMMVIMLPLIIRM 316
>gi|119962497|ref|YP_948623.1| type II secretion system protein F [Arthrobacter aurescens TC1]
gi|119949356|gb|ABM08267.1| putative bacterial type II secretion system protein F domain
[Arthrobacter aurescens TC1]
Length = 296
Score = 173 bits (440), Expect = 3e-41, Method: Composition-based stats.
Identities = 60/231 (25%), Positives = 115/231 (49%), Gaps = 9/231 (3%)
Query: 98 IVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIG 157
+ L G + L LL+++ + + ++G+++ L P +
Sbjct: 73 LDKLLAKLGRPAGMPLGRLLILKPALALAAGLVGLLFF------LRAPSGQGFLLYLAAV 126
Query: 158 YVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVP 217
+ + P + I +RQ +I+ P+ LD +LI VE+G+ + A+ R ++ G P
Sbjct: 127 LLVYFIPDLIIHGRAAERQKAIQTELPNTLDQMLISVEAGLGFEGAMARAGQNGSG---P 183
Query: 218 LSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVS 277
L+ EML T+ ++ +R+ A+ R + +R A++Q+D YG +I + LR
Sbjct: 184 LAMEMLRTLQDMQAGRSRKEAYVALAERVDVHDLRAFVGAIVQADTYGIAIANVLRTQAK 243
Query: 278 ETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMKD 328
+ R +R AE++A L K+ P++ LPVL +VI+GPA+L+++ +
Sbjct: 244 QMRIKRRQRAEEQAMKLPVKVLFPLMFCILPVLFIVIMGPAVLNVMTNLAG 294
>gi|227114881|ref|ZP_03828537.1| putative type IV pilus protein [Pectobacterium carotovorum subsp.
brasiliensis PBR1692]
Length = 319
Score = 173 bits (440), Expect = 3e-41, Method: Composition-based stats.
Identities = 61/222 (27%), Positives = 120/222 (54%), Gaps = 3/222 (1%)
Query: 105 AGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAP 164
AG R ++ L++ + + I + +G+ + V A ++ +VG P
Sbjct: 99 AGLRRNEAVGWLVMGKFAAGALLAIALV---WGWLPPADRAGLTGVAAGLIGFFVGSMVP 155
Query: 165 SVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLL 224
W+ R + A PDALDL+++C E+G+ I + L+ V++++G S +++E+
Sbjct: 156 EWWLKWRAASRGEKLACAVPDALDLMVVCAEAGLPIGRVLQVVSKELGLSSPEMADELHY 215
Query: 225 TIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERL 284
T AEL L +R +A ++ RT++ + + LIQ++RYGT + +LR + E+R +
Sbjct: 216 TAAELQILSDRTLAMKHLAERTRVSEIESMVATLIQAERYGTPLSQALRTIADESRKTLI 275
Query: 285 MEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
+ E+KA L +L+VP++ LP +I ++ PA++ ++ +
Sbjct: 276 LSLEEKAGKLPAQLSVPLMALILPPIIAIMASPALVRVVRLL 317
>gi|170704228|ref|ZP_02894801.1| type II secretion system protein [Burkholderia ambifaria IOP40-10]
gi|170130863|gb|EDS99617.1| type II secretion system protein [Burkholderia ambifaria IOP40-10]
Length = 255
Score = 173 bits (440), Expect = 3e-41, Method: Composition-based stats.
Identities = 77/255 (30%), Positives = 137/255 (53%), Gaps = 1/255 (0%)
Query: 73 RTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGI 132
R ++ L ++L + + + +L AGFR +++ ++ ++L ++F I
Sbjct: 2 RQDLTRRLAQLGERLPVLDPMQRVKLGLQLTRAGFRERRAVSAMIGIKLSCGVLFAGFAI 61
Query: 133 IWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLI 192
++ +L E+ F +R A++ +G P + ++++R+ I +PDALDLL+I
Sbjct: 62 VFSPYIPRLGEF-FVIRAVAMVGAFVIGVIVPEYVLGAMIRRRRRIIAACFPDALDLLVI 120
Query: 193 CVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVR 252
C +G S+ +RRVA ++ PL++E+ + EL+ N A +F R R
Sbjct: 121 CTMAGNSLASGVRRVARELQRICPPLADELTVCADELTLSGNVSEALAHFALRVNFSSAR 180
Query: 253 NATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLIL 312
+ L QS R+GT I +LR L R+E+++ E+KAA L PK+TVPM++F LP + L
Sbjct: 181 SLATTLTQSQRFGTPITQALRTLSRSERTEQVVALEEKAAKLAPKITVPMMLFILPTVGL 240
Query: 313 VIIGPAILSIIDTMK 327
+ GPA + +I+ K
Sbjct: 241 IAAGPAAIRLIEVFK 255
>gi|156744077|ref|YP_001434206.1| type II secretion system protein [Roseiflexus castenholzii DSM
13941]
gi|156235405|gb|ABU60188.1| type II secretion system protein [Roseiflexus castenholzii DSM
13941]
Length = 309
Score = 173 bits (440), Expect = 3e-41, Method: Composition-based stats.
Identities = 66/312 (21%), Positives = 131/312 (41%), Gaps = 9/312 (2%)
Query: 17 AITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRD 76
+I TA++I L+ A ++ S + +R+ + + K S R+
Sbjct: 6 SIVTALAI-LLVVAGLMASRRDVTVGERLDAYLSPTVEKAPSNPSLEAKQPFSERVIIPL 64
Query: 77 SKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIF 136
K + + E + +L AG+ + + + I+ +++G++
Sbjct: 65 LKRASRAFAWIMPQN--RYEALRLRLAMAGYPWGLTAADFVGAK---GIVCVLVGLLTGV 119
Query: 137 GYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVES 196
P + + I F P VW+S + +RQ+ + A PDALDLL I +
Sbjct: 120 IGWAADAAPTFFNILLLGGIALCAFFLPDVWLSRRIGQRQTELLNALPDALDLLAIATAA 179
Query: 197 GISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQ 256
G+S + A++ + L+ E + ++S R+ A + RT + + +
Sbjct: 180 GLSFENAIQEITSKWTN---ELAREFSRVLRDMSMGVPRRQALTDMAERTGVPDIASFVS 236
Query: 257 ALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIG 316
A+ Q++ G SIG L V E R+ R A+++A K+ P++ P + V++G
Sbjct: 237 AIKQAEALGVSIGRVLTVQAEEMRTRRRQRAQERANQAPVKMMFPLVFLIFPAIFAVLLG 296
Query: 317 PAILSIIDTMKD 328
PA+ +++
Sbjct: 297 PAVPQLLEAFGG 308
>gi|226310159|ref|YP_002770053.1| hypothetical protein BBR47_05720 [Brevibacillus brevis NBRC 100599]
gi|226093107|dbj|BAH41549.1| conserved hypothetical membrane protein [Brevibacillus brevis NBRC
100599]
Length = 311
Score = 173 bits (439), Expect = 3e-41, Method: Composition-based stats.
Identities = 71/313 (22%), Positives = 139/313 (44%), Gaps = 16/313 (5%)
Query: 18 ITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDS 77
I T V +F L++A+ + +EK+ K +A E+ + +++++S RL R
Sbjct: 5 IITCVFLFLLLFAICLKEWYRYSIEKQ-KLLAHVHEMSGHKNYGVRKQETSSERLVKRLL 63
Query: 78 KSLRNFV---KKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIW 134
+ ++ +++N + + + L AG + ++ V++ + ++ +I G ++
Sbjct: 64 RYGDDYAVMGQRINFFS--ESHEVEDWLLRAGRPLDLTVAQFQGVKIFMALLGIIAGTLF 121
Query: 135 IFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICV 194
F +I +G+ P + + + RQ ++ P+ LD + + +
Sbjct: 122 FI-------LRFPFSHLGLIAWPLIGYFLPILLLKKKARDRQHQLRYDLPEFLDTVSVTL 174
Query: 195 ESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNA 254
++G+S+DQALR V + G P+ EE EL R+ A+E R +
Sbjct: 175 QAGVSLDQALREVIKFFDG---PIREEFSRFNQELDLGVQREKAYEQLLRRNDNPEFQML 231
Query: 255 TQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVI 314
+ALIQ R G I + + R R ++KAA PK+T+ P I++I
Sbjct: 232 IKALIQGMRLGVPIAVTFKAQAENMRRIRKELIKEKAAKASPKVTLITTFIVTPTAIILI 291
Query: 315 IGPAILSIIDTMK 327
G +L+I+D
Sbjct: 292 GGLMVLNILDNFS 304
>gi|148976302|ref|ZP_01813026.1| Flp pilus assembly protein TadC [Vibrionales bacterium SWAT-3]
gi|145964396|gb|EDK29651.1| Flp pilus assembly protein TadC [Vibrionales bacterium SWAT-3]
Length = 283
Score = 173 bits (439), Expect = 3e-41, Method: Composition-based stats.
Identities = 62/234 (26%), Positives = 113/234 (48%), Gaps = 6/234 (2%)
Query: 95 DENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVI 154
E+ KL G S + LV+R + I ++ + + + I
Sbjct: 55 QESRRRKLTLIGLGSPNAETYFLVIRFTLMTIGAMI------WHMTQISESDVYSIAECI 108
Query: 155 LIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQ 214
I V + V + I R PDA+DL++ICV SG++++ R V E++
Sbjct: 109 AIAIVTGILIDRILDWWVNQVLMQISRVVPDAIDLMVICVASGLTLESVFRCVGEEMRSI 168
Query: 215 SVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRV 274
S LS E LLT E+S L + Q A N R Q+ + N + Q+ +YGT + D+L++
Sbjct: 169 SPALSREWLLTATEISVLDSPQTALNNLDKRVQLPDINNVVTTMNQALQYGTPLADALKL 228
Query: 275 LVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMKD 328
+ S++R +E E+ + K++ P+++F + ++ +II P +L+++ T+
Sbjct: 229 IASDSRQYYFLELEEWVGKIPAKMSFPLVVFIMLPVVAIIIAPIMLNLMQTLGG 282
>gi|86144313|ref|ZP_01062645.1| Flp pilus assembly protein TadC [Vibrio sp. MED222]
gi|85837212|gb|EAQ55324.1| Flp pilus assembly protein TadC [Vibrio sp. MED222]
Length = 288
Score = 173 bits (439), Expect = 3e-41, Method: Composition-based stats.
Identities = 61/248 (24%), Positives = 120/248 (48%), Gaps = 5/248 (2%)
Query: 74 TRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGII 133
TR+ K + K + + KL AAGF S++ ++ ++++V P + I
Sbjct: 43 TREEKKRADLFKAILSRISFNKHETKRKLVAAGFYSDFLADVYYLLKIV-PFCVCLALIG 101
Query: 134 WIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLIC 193
+ F L + +LI +G P ++S + I P LDL+ +C
Sbjct: 102 FDFYSGDTKTVFALLYLMGALLIFIIG---PDSYVSARGKSNIKHISSRLPFLLDLMNVC 158
Query: 194 VESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRN 253
V +G++I+ +L +A+++ L+ + +T+ E S L + A E FY ++
Sbjct: 159 VHTGMTIESSLEYLAKELHSVDSNLAHVVRVTV-ERSRLVGLEKALEEFYELVPTSESQS 217
Query: 254 ATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILV 313
++QS ++G+S+G L L S+ R +M+ E++ +G K+++P+I F + +I++
Sbjct: 218 FVMTMVQSLQFGSSVGPVLVTLASDIRELNMMDLEERIGKMGAKMSIPLIAFIMVPIIIL 277
Query: 314 IIGPAILS 321
I P I+
Sbjct: 278 IAAPGIMR 285
>gi|116689547|ref|YP_835170.1| type II secretion system protein [Burkholderia cenocepacia HI2424]
gi|116647636|gb|ABK08277.1| type II secretion system protein [Burkholderia cenocepacia HI2424]
Length = 332
Score = 173 bits (438), Expect = 5e-41, Method: Composition-based stats.
Identities = 55/257 (21%), Positives = 112/257 (43%), Gaps = 6/257 (2%)
Query: 70 SRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLI 129
+RLR R ++ L+ + L GF + + + R+V I+
Sbjct: 77 ARLRERFEDVGMRWLDT-GFSRYLIADEDRRLLEQCGFVDVRARALFVGARIVCAILLPA 135
Query: 130 LGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDL 189
L ++ + G + +P L + V G+ P +++ R+ S+ P +D+
Sbjct: 136 LAVLVLIGRGQQARWPLWLSIALV-----TGYMLPKIYVRRRATARRQSLAAELPLLVDM 190
Query: 190 LLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMD 249
L + G+S+DQ+++ V D LS E+ + + + R+ + + N +
Sbjct: 191 LRLLQGVGLSLDQSIQVVTHDFQTMLPVLSWELGVAQRQFAAGRTREQSLQRLTNSFDNE 250
Query: 250 CVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPV 309
+R + LIQ D++G ++ + L+ R R ++ L K+T MI+ LP
Sbjct: 251 DLRAIVRLLIQVDKHGGAVQEPLKQFGDRLREGRRATLREQIGRLTVKMTGVMIVTLLPA 310
Query: 310 LILVIIGPAILSIIDTM 326
L++V GP I++++ +
Sbjct: 311 LLIVTAGPGIMTVLSAL 327
>gi|170732851|ref|YP_001764798.1| type II secretion system protein [Burkholderia cenocepacia MC0-3]
gi|169816093|gb|ACA90676.1| type II secretion system protein [Burkholderia cenocepacia MC0-3]
Length = 332
Score = 173 bits (438), Expect = 5e-41, Method: Composition-based stats.
Identities = 55/257 (21%), Positives = 112/257 (43%), Gaps = 6/257 (2%)
Query: 70 SRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLI 129
+RLR R ++ L+ + L GF + + + R+V I+
Sbjct: 77 ARLRERFEDVGMRWLDT-GFSRYLIADEDRRLLEQCGFVDVRARALFVGARIVCAILLPA 135
Query: 130 LGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDL 189
L ++ + G + +P L + V G+ P +++ R+ S+ P +D+
Sbjct: 136 LAVLVLIGRGQQARWPLWLSIALV-----TGYMLPKIYVRRRATARRQSLGAELPLLVDM 190
Query: 190 LLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMD 249
L + G+S+DQ+++ V D LS E+ + + + R+ + + N +
Sbjct: 191 LRLLQGVGLSLDQSIQVVTHDFQTMLPVLSWELGVAQRQFAAGRTREQSLQRLTNSFDNE 250
Query: 250 CVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPV 309
+R + LIQ D++G ++ + L+ R R ++ L K+T MI+ LP
Sbjct: 251 DLRAIVRLLIQVDKHGGAVQEPLKQFGDRLREGRRATLREQIGRLTVKMTGVMIVTLLPA 310
Query: 310 LILVIIGPAILSIIDTM 326
L++V GP I++++ +
Sbjct: 311 LLIVTAGPGIMTVLSAL 327
>gi|262164953|ref|ZP_06032691.1| type II/IV secretion system protein TadC associated with Flp pilus
assembly [Vibrio mimicus VM223]
gi|262027333|gb|EEY46000.1| type II/IV secretion system protein TadC associated with Flp pilus
assembly [Vibrio mimicus VM223]
Length = 291
Score = 172 bits (437), Expect = 5e-41, Method: Composition-based stats.
Identities = 60/251 (23%), Positives = 114/251 (45%), Gaps = 5/251 (1%)
Query: 74 TRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGII 133
TR+ K+ FV L + KL +G +++ + +++ P I
Sbjct: 44 TREEKNRFEFVYSLLNMVSFNQDETKKKLVKSGIYNQFIARSYYLFKII-PFGLCAFFSI 102
Query: 134 WIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLIC 193
F K E + + ++ +G P ++I+ +K I P LDL+ +C
Sbjct: 103 LAFLSGKTDETMLVVSLAIGAIVFLLG---PDMYIAARGKKITKKISSRLPFLLDLMNVC 159
Query: 194 VESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRN 253
V +G++I+ L +A ++ L+ + T+ E S L + A FY+ ++
Sbjct: 160 VHTGMTIEACLEYLAFELRTVDHHLAYVVKKTV-ERSKLVGLEKALNEFYDLVPTAEAQS 218
Query: 254 ATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILV 313
+ QS +YG+SIG L L S+ R +M+ E+K +G K+++P+I F + +I++
Sbjct: 219 FVMTMTQSLKYGSSIGPVLATLASDIREMNMMDLEEKIGKMGAKMSIPLIAFIMVPIIIL 278
Query: 314 IIGPAILSIID 324
I P I+ +
Sbjct: 279 IAAPGIMRMFS 289
>gi|167620118|ref|ZP_02388749.1| Bacterial type II secretion system protein F domain [Burkholderia
thailandensis Bt4]
Length = 254
Score = 172 bits (437), Expect = 5e-41, Method: Composition-based stats.
Identities = 74/254 (29%), Positives = 133/254 (52%), Gaps = 1/254 (0%)
Query: 74 TRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGII 133
R ++ + + +++ + + +L +AGFR +++++ ++LVV + ++
Sbjct: 1 RRVAQRVASLGERVPVVDATQRMKLAARLASAGFRERRAVSVMAGLKLVVGACAGLAALV 60
Query: 134 WIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLIC 193
++ +Y F LRV + +G P + V +RQ +I PDALDLL+IC
Sbjct: 61 VGAHVPRVGDY-FVLRVLMMAGAFVIGMMLPEHALGFAVARRQKTIAAYLPDALDLLVIC 119
Query: 194 VESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRN 253
+G S+ A+RRVA ++G PL++E + EL + A R + +R
Sbjct: 120 TNAGNSLAVAIRRVASELGTICPPLADEFSVCADELQIGGDAAFALNAMAARIGLPSMRA 179
Query: 254 ATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILV 313
L+QS +YGT I SLR+L R+ +++ E+KAA L PK+T+PM++F +P + L+
Sbjct: 180 LVTTLVQSQQYGTPITQSLRMLSRTERAMQMIALEEKAAKLAPKMTLPMMLFVMPTVALI 239
Query: 314 IIGPAILSIIDTMK 327
GPA++ +I
Sbjct: 240 AAGPAVIRLIAVFH 253
>gi|254506088|ref|ZP_05118232.1| bipartite nuclear localization signal containing protein [Vibrio
parahaemolyticus 16]
gi|219550906|gb|EED27887.1| bipartite nuclear localization signal containing protein [Vibrio
parahaemolyticus 16]
Length = 248
Score = 172 bits (437), Expect = 5e-41, Method: Composition-based stats.
Identities = 55/233 (23%), Positives = 112/233 (48%), Gaps = 6/233 (2%)
Query: 95 DENIVNKLRAAGFRSEY-SLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAV 153
++ I +K + AG S+ + + + ++ + L I+I+ + P + A
Sbjct: 21 NQEINDKFKRAGISSKSKWVALYMPLKY--GALMLGCAAIYIYSIKSAISTPTLIAFMAT 78
Query: 154 ILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGG 213
LI + P + + R S + P LDLL +CV++G++I+ A+ +++++ G
Sbjct: 79 WLI--ICIVVPDALLDGRGKARVSRVSGQLPYLLDLLAVCVQTGMTIESAMNYLSKEMVG 136
Query: 214 QSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLR 273
L+ +L + + L Q A + Y +R+ L QS +YG+SI L
Sbjct: 137 FDKELAG-LLKKTNDRARLVGMQKALDELYEDIPSSEMRSFVMTLKQSLQYGSSIYGVLT 195
Query: 274 VLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
L + R +++ E+K L K++VP+I+F + ++++I P IL ++ +
Sbjct: 196 TLAGDIRDVQMLTLEEKIGKLAAKMSVPLILFIMMPIVILIAAPGILRMMSNV 248
>gi|28900581|ref|NP_800236.1| putative TadC protein [Vibrio parahaemolyticus RIMD 2210633]
gi|260365461|ref|ZP_05777998.1| Flp pilus assembly protein TadC [Vibrio parahaemolyticus K5030]
gi|260877526|ref|ZP_05889881.1| Flp pilus assembly protein TadC [Vibrio parahaemolyticus AN-5034]
gi|260897533|ref|ZP_05906029.1| Flp pilus assembly protein TadC [Vibrio parahaemolyticus Peru-466]
gi|260901735|ref|ZP_05910130.1| Flp pilus assembly protein TadC [Vibrio parahaemolyticus AQ4037]
gi|28808961|dbj|BAC62069.1| putative TadC [Vibrio parahaemolyticus RIMD 2210633]
gi|308087116|gb|EFO36811.1| Flp pilus assembly protein TadC [Vibrio parahaemolyticus Peru-466]
gi|308090674|gb|EFO40369.1| Flp pilus assembly protein TadC [Vibrio parahaemolyticus AN-5034]
gi|308108821|gb|EFO46361.1| Flp pilus assembly protein TadC [Vibrio parahaemolyticus AQ4037]
gi|308114358|gb|EFO51898.1| Flp pilus assembly protein TadC [Vibrio parahaemolyticus K5030]
gi|328470523|gb|EGF41434.1| putative TadC protein [Vibrio parahaemolyticus 10329]
Length = 288
Score = 171 bits (435), Expect = 9e-41, Method: Composition-based stats.
Identities = 60/245 (24%), Positives = 117/245 (47%), Gaps = 8/245 (3%)
Query: 82 NFVKKLNL---KAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGY 138
FV KL+L + E N L AG SE+ +++++ P++F + I + +
Sbjct: 48 PFVDKLSLHLSRLSFNKEETKNNLVRAGIHSEFIAQAYYLLKII-PLVFCLAFIGYSYIQ 106
Query: 139 DKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGI 198
E F + L V AP ++IS+ + P LDL+ +CV +G+
Sbjct: 107 G---EMEFSSAFISFSLSMLVCLIAPDMYISSRGNANVRHVSSRLPFLLDLMNVCVHTGM 163
Query: 199 SIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQAL 258
+++ +L ++ ++ L+ + T +E + + A FY+ ++ L
Sbjct: 164 TLEASLDYLSNELKTVDENLAYVVKKT-SERAKIVGLDRALTEFYDLVPTTEAQSFVMTL 222
Query: 259 IQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPA 318
QS +YG+S+G L L S+ R ++E E+K +G K+++PMI F + ++++I P
Sbjct: 223 TQSLKYGSSVGAVLASLASDIREINMLELEEKIGKMGAKMSIPMIAFIMIPIVVLIAAPG 282
Query: 319 ILSII 323
I+ ++
Sbjct: 283 IMRML 287
>gi|116626772|ref|YP_828928.1| type II secretion system protein [Candidatus Solibacter usitatus
Ellin6076]
gi|116229934|gb|ABJ88643.1| type II secretion system protein [Candidatus Solibacter usitatus
Ellin6076]
Length = 312
Score = 171 bits (435), Expect = 1e-40, Method: Composition-based stats.
Identities = 71/316 (22%), Positives = 150/316 (47%), Gaps = 12/316 (3%)
Query: 14 LAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLR 73
+ + + + + + ++ S L +R + +R + Q + A + R
Sbjct: 1 MIIDLLLFLFTGATLSLILWTSFE---LFRRQEDPLNDRLEGLQSQAMVVA---ARATRR 54
Query: 74 TRDSKSLRNFVKKLNLKAILVD--ENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILG 131
+ ++ L F+ + L D L AG R + +L + + L+ + FL G
Sbjct: 55 KQSAQGLDRFLYFIALVPGGDDWMNGTEKLLAQAGIRRKSALALYCIFVLIF-VFFLSAG 113
Query: 132 IIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLL 191
+++ + +G + +GF P + LV+ ++ ++ A PD +DLL
Sbjct: 114 TVYL---QRNNPNGASSLLGGLAAAFLLGFILPKQILYRLVKSYRTKLQDALPDTVDLLG 170
Query: 192 ICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCV 251
I + +G+ +DQA+ RV+E++ L+ E + ++ +R +F F RT ++ +
Sbjct: 171 IVLGTGLGLDQAMMRVSEEMQFIYPELANEFATVVMQVRAGQDRGKSFNQFVRRTGIEDI 230
Query: 252 RNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLI 311
++ + +IQS+++GTS+ +L+V R+ R + AE G K+ P+++F LPVL
Sbjct: 231 KSLSAMIIQSEKFGTSLAQALKVYADALRTRRRLRAEAAVGKAGIKMLFPIVVFILPVLF 290
Query: 312 LVIIGPAILSIIDTMK 327
++ + P +LS++ +K
Sbjct: 291 VITLVPGMLSVMKDLK 306
>gi|332970974|gb|EGK09948.1| hypothetical protein HMPREF9374_2751 [Desmospora sp. 8437]
Length = 306
Score = 171 bits (435), Expect = 1e-40, Method: Composition-based stats.
Identities = 59/238 (24%), Positives = 110/238 (46%), Gaps = 10/238 (4%)
Query: 88 NLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQ 147
N++ + E + + L AG +++ L ++V I I G+++
Sbjct: 70 NIELLSDPEELKDDLIKAGHPYGLTVDRLQGAKVVFAIGGTIFGLLYFL-------IGLP 122
Query: 148 LRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRV 207
L AV +G+ P + QKRQ I+ PD +D++ I +++G+++D AL
Sbjct: 123 LAPFAVAFGPLLGYLFPIYMVKFKAQKRQEEIQYELPDFMDMMSITLQAGMALDTALDYY 182
Query: 208 AEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTS 267
+ PLSEE+ E+SF R+ A+ +RT + Q++IQ+ GT
Sbjct: 183 VS---TNNGPLSEEIARMNQEISFGVQRETAYRALIDRTDSTELETLVQSMIQAHNLGTP 239
Query: 268 IGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDT 325
I ++ + E R+ R +A+++A PK++ + P ++L++ G IL T
Sbjct: 240 ISETFALQAMEMRNMRAEKAKEQAGKSEPKISAVAGLVITPSIMLLVFGAFILKFFFT 297
>gi|121534350|ref|ZP_01666174.1| type II secretion system protein [Thermosinus carboxydivorans Nor1]
gi|121307120|gb|EAX48038.1| type II secretion system protein [Thermosinus carboxydivorans Nor1]
Length = 308
Score = 171 bits (435), Expect = 1e-40, Method: Composition-based stats.
Identities = 74/318 (23%), Positives = 141/318 (44%), Gaps = 16/318 (5%)
Query: 14 LAVAITTAVSIFSLIYAVVIPSLGS-GELEKRMKSVAVEREILRK--QQITSLQKDSASS 70
+ + + + V++F L+Y ++ + + G + R+K++ Q++ K+ S
Sbjct: 3 MLIVVLSFVTVFLLVYLLLAANALAQGNIAMRLKALNTMTAGRSDIDQELARPFKERVLS 62
Query: 71 RLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLIL 130
LR+ + +L F + +A+ K+ AAG + + L++ +F +
Sbjct: 63 PLRSDFAAALSRFTPRALRRAVEE------KMAAAGGFGSLTPDEF----LLLSGLFAVA 112
Query: 131 GIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLL 190
L VG + P ++ + R+ SI++ PD LDLL
Sbjct: 113 APAVAATLAALTGAAAHQIVGLSFMAFASALLLPFFLLNRKIAMRKRSIQKDLPDVLDLL 172
Query: 191 LICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDC 250
+ VE+G+ D AL +++E + G L +E + E+ R+ A R +
Sbjct: 173 TVSVEAGLGFDGALAKLSEKMKG---ALVDEFTRALQEMRMGVPRREALRAMGLRCDVPD 229
Query: 251 VRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVL 310
+ T +LIQ+D+ G SIG LRV + R +R ++ A K+ +P++ F P +
Sbjct: 230 LSLFTTSLIQADQLGVSIGQVLRVQSASMREKRRQRTQELAMKAPVKMLLPLVFFIFPAI 289
Query: 311 ILVIIGPAILSIIDTMKD 328
+V++GPAI+ I T
Sbjct: 290 FVVVLGPAIIQIFLTFSQ 307
>gi|53719426|ref|YP_108412.1| putative fimbriae-related membrane protein [Burkholderia
pseudomallei K96243]
gi|76810064|ref|YP_333441.1| putative fimbriae-related membrane protein [Burkholderia
pseudomallei 1710b]
gi|121598751|ref|YP_993001.1| type II secretion system protein F [Burkholderia mallei SAVP1]
gi|124385777|ref|YP_001026333.1| type II secretion system protein F [Burkholderia mallei NCTC 10229]
gi|126450336|ref|YP_001080393.1| type II secretion system protein F [Burkholderia mallei NCTC 10247]
gi|134282407|ref|ZP_01769112.1| bacterial type II secretion system protein [Burkholderia
pseudomallei 305]
gi|217421557|ref|ZP_03453061.1| bacterial type II secretion system protein [Burkholderia
pseudomallei 576]
gi|226196355|ref|ZP_03791937.1| bacterial type II secretion system protein [Burkholderia
pseudomallei Pakistan 9]
gi|237812170|ref|YP_002896621.1| bacterial type II secretion system protein [Burkholderia
pseudomallei MSHR346]
gi|254177530|ref|ZP_04884185.1| type II secretion system protein [Burkholderia mallei ATCC 10399]
gi|254188724|ref|ZP_04895235.1| bacterial type II secretion system protein [Burkholderia
pseudomallei Pasteur 52237]
gi|254259567|ref|ZP_04950621.1| bacterial type II secretion system protein [Burkholderia
pseudomallei 1710a]
gi|254297711|ref|ZP_04965164.1| bacterial type II secretion system protein [Burkholderia
pseudomallei 406e]
gi|254358538|ref|ZP_04974811.1| type II secretion system protein [Burkholderia mallei 2002721280]
gi|52209840|emb|CAH35812.1| putative fimbriae-related membrane protein [Burkholderia
pseudomallei K96243]
gi|76579517|gb|ABA48992.1| putative fimbriae-related membrane protein [Burkholderia
pseudomallei 1710b]
gi|121227561|gb|ABM50079.1| bacterial type II secretion system protein F domain [Burkholderia
mallei SAVP1]
gi|126243206|gb|ABO06299.1| bacterial type II secretion system F domain protein [Burkholderia
mallei NCTC 10247]
gi|134246445|gb|EBA46534.1| bacterial type II secretion system protein [Burkholderia
pseudomallei 305]
gi|148027665|gb|EDK85686.1| type II secretion system protein [Burkholderia mallei 2002721280]
gi|157807239|gb|EDO84409.1| bacterial type II secretion system protein [Burkholderia
pseudomallei 406e]
gi|157936403|gb|EDO92073.1| bacterial type II secretion system protein [Burkholderia
pseudomallei Pasteur 52237]
gi|160698569|gb|EDP88539.1| type II secretion system protein [Burkholderia mallei ATCC 10399]
gi|217395299|gb|EEC35317.1| bacterial type II secretion system protein [Burkholderia
pseudomallei 576]
gi|225931572|gb|EEH27577.1| bacterial type II secretion system protein [Burkholderia
pseudomallei Pakistan 9]
gi|237503370|gb|ACQ95688.1| bacterial type II secretion system protein [Burkholderia
pseudomallei MSHR346]
gi|254218256|gb|EET07640.1| bacterial type II secretion system protein [Burkholderia
pseudomallei 1710a]
Length = 314
Score = 171 bits (435), Expect = 1e-40, Method: Composition-based stats.
Identities = 72/262 (27%), Positives = 134/262 (51%), Gaps = 1/262 (0%)
Query: 66 DSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPI 125
D + + R ++ + + +++ + + +L +AGFR +++++ ++LVV
Sbjct: 53 DDGARSVPRRVAQRVASLGERVPVVDATQRMKLAARLASAGFREHRAVSVMAGLKLVVGA 112
Query: 126 IFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPD 185
+ + ++ +Y LRV + +G P + ++ +RQ +I PD
Sbjct: 113 CAGLAALALGAHVPRVGDY-VVLRVLMMAGAFVIGMMLPEHALGFVLARRQKTIAAYLPD 171
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
ALDLL+IC +G S+ A+RRVA ++ PL++E + EL + A R
Sbjct: 172 ALDLLVICTNAGNSLAVAIRRVASELKTICPPLADEFSVCADELQIGGDAAFALNAMAAR 231
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
+ +R L+QS +YGT I SLR+L R+ +++ E+KAA L PK+T+PM++F
Sbjct: 232 IGLPSMRALVTTLVQSQQYGTPITQSLRMLSRTERAMQMIALEEKAAKLAPKMTLPMMLF 291
Query: 306 FLPVLILVIIGPAILSIIDTMK 327
+P + L+ GPA++ +I
Sbjct: 292 VMPTVALIAAGPAVIRLIAVFH 313
>gi|86360589|ref|YP_472477.1| putative tadC pilus assembly protein [Rhizobium etli CFN 42]
gi|86284691|gb|ABC93750.1| putative tadC pilus assembly protein [Rhizobium etli CFN 42]
Length = 314
Score = 171 bits (435), Expect = 1e-40, Method: Composition-based stats.
Identities = 67/301 (22%), Positives = 141/301 (46%), Gaps = 5/301 (1%)
Query: 27 LIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQ-KDSASSRLRTRDSKSLRNFVK 85
+ +AV+I + + EL R + V+V Q D+ + L +++ +R + +
Sbjct: 11 VFFAVLIFTAAASELFFRQREVSVRVLKSSAAAREEFQLGDTTIADLGEAENRLIRRYFE 70
Query: 86 KLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYP 145
+ + N+L AG+ + ++ VVR V+ I L+ + + +
Sbjct: 71 ITRRDTNVN--STQNRLIRAGYFAAGAVTTFQVVRAVICIGMLVAAVWAVNRIAPAMSQ- 127
Query: 146 FQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALR 205
+ + F +++I ++ +R +PD +D+L++C+++G+SI+ A
Sbjct: 128 -MAALIIAMFAAGATFILVNIYIDRRGAAKEREYRRLFPDFMDMLIVCLDAGMSIEAAAN 186
Query: 206 RVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYG 265
RVA + + + + + E+ + A N R ++D R + QS+ G
Sbjct: 187 RVAREFVDKQQDFGLHLSIMMLEVRGGRRLREALANLATRLRIDEARALSVLFRQSEELG 246
Query: 266 TSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDT 325
TS+ +LRV +E R R++ AE+KA +L K+ +P+ F PV +L+++ P I+ ++
Sbjct: 247 TSVTQTLRVYSNEMRDLRVVRAEEKANALPVKMLLPLGAFLFPVSLLIVLVPIIMRVVSL 306
Query: 326 M 326
+
Sbjct: 307 L 307
>gi|294102185|ref|YP_003554043.1| Type II secretion system F domain protein [Aminobacterium
colombiense DSM 12261]
gi|293617165|gb|ADE57319.1| Type II secretion system F domain protein [Aminobacterium
colombiense DSM 12261]
Length = 296
Score = 171 bits (435), Expect = 1e-40, Method: Composition-based stats.
Identities = 71/263 (26%), Positives = 128/263 (48%), Gaps = 14/263 (5%)
Query: 66 DSASSRLRTRDSKSLRNFVKKLN--LKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVV 123
D ++ R R LR + ++ + AG +L +++
Sbjct: 43 DDETASFRERVVDPLRAKISRIGRFFFPQEAIARMDRYCLLAGRPRGLRGEVLAGLKVSF 102
Query: 124 PIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAW 183
+I ++ I P R+ I++G +G+ P +WI+N ++RQ +
Sbjct: 103 ALILAMVSFFLI---------PDPFRISGAIILGALGYMIPGLWITNKGKQRQVEARNQL 153
Query: 184 PDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFY 243
PD +DL+++ VE+G+ +D A+ RVA+ + G P+ E + E+S +RQ AF
Sbjct: 154 PDVMDLMVVSVEAGLGLDAAMSRVADRLRG---PMGENFARALHEISLGESRQAAFRGIM 210
Query: 244 NRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMI 303
R ++ VR+ +LIQ++ G ++ + LR + R ++AE+ A K+ PMI
Sbjct: 211 ERLPIEEVRHFIASLIQAEELGVAVSEVLRSQAGTLKRLRRLKAEEHARKAPIKILFPMI 270
Query: 304 IFFLPVLILVIIGPAILSIIDTM 326
+F P L +VI+GPA LSI++T+
Sbjct: 271 LFIFPSLFVVILGPAFLSIMETL 293
>gi|115351460|ref|YP_773299.1| type II secretion system protein [Burkholderia ambifaria AMMD]
gi|115281448|gb|ABI86965.1| type II secretion system protein [Burkholderia ambifaria AMMD]
Length = 337
Score = 171 bits (434), Expect = 1e-40, Method: Composition-based stats.
Identities = 57/278 (20%), Positives = 117/278 (42%), Gaps = 7/278 (2%)
Query: 53 EILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKL--NLKAILVDENIVNKLRAAGFRSE 110
+ +++ Q SRL ++ ++ L + ++V E L GF
Sbjct: 62 DESLRKEPAGRQAPGQPSRLAQMQARLSVFGMRWLDTGVGRLVVAEEDRLLLEQCGFVDT 121
Query: 111 YSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISN 170
+ + L R+ I+ + I + V + VGF P +++
Sbjct: 122 RTRGLFLSARIACSIVIPLAYIGVV-----GPHVSGTQWWLGVGISFIVGFMVPKLYLRR 176
Query: 171 LVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELS 230
KR+ ++ P +D+L + G+S+DQ+++ V D G LS EM + + +
Sbjct: 177 RAAKRRQAVTDELPLLVDMLRLLQGVGLSLDQSIQVVTNDFKGMMPVLSSEMEIAQRQFA 236
Query: 231 FLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKK 290
R+ + + + + + +R + LIQ D++G ++ + L+ R R ++
Sbjct: 237 AGRTREQSLQRLSSGFENEDLRAIVRLLIQVDKHGGAVQEPLKQFGERLREARRAMLRER 296
Query: 291 AASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMKD 328
L K+T MI+ LP L++V GP ++S++ +
Sbjct: 297 IGRLTVKMTGVMIVTLLPALLIVTAGPGMISVLRALNQ 334
>gi|167911026|ref|ZP_02498117.1| bacterial type II secretion system protein F domain [Burkholderia
pseudomallei 112]
Length = 264
Score = 171 bits (434), Expect = 1e-40, Method: Composition-based stats.
Identities = 72/262 (27%), Positives = 134/262 (51%), Gaps = 1/262 (0%)
Query: 66 DSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPI 125
D + + R ++ + + +++ + + +L +AGFR +++++ ++LVV
Sbjct: 3 DDGARSVPRRVAQRVASLGERVPVVDATQRMKLAARLASAGFREHRAVSVMAGLKLVVGA 62
Query: 126 IFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPD 185
+ + ++ +Y LRV + +G P + ++ +RQ +I PD
Sbjct: 63 CAGLAALALGAHVPRVGDY-VVLRVLMMAGAFVIGMMLPEHALGFVLARRQKTIAAYLPD 121
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
ALDLL+IC +G S+ A+RRVA ++ PL++E + EL + A R
Sbjct: 122 ALDLLVICTNAGNSLAVAIRRVASELKTICPPLADEFSVCADELQIGGDAAFALNAMAAR 181
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
+ +R L+QS +YGT I SLR+L R+ +++ E+KAA L PK+T+PM++F
Sbjct: 182 IGLPSMRALVTTLVQSQQYGTPITQSLRMLSRTERAMQMIALEEKAAKLAPKMTLPMMLF 241
Query: 306 FLPVLILVIIGPAILSIIDTMK 327
+P + L+ GPA++ +I
Sbjct: 242 VMPTVALIAAGPAVIRLIAVFH 263
>gi|170692559|ref|ZP_02883721.1| type II secretion system protein [Burkholderia graminis C4D1M]
gi|170142215|gb|EDT10381.1| type II secretion system protein [Burkholderia graminis C4D1M]
Length = 318
Score = 171 bits (434), Expect = 1e-40, Method: Composition-based stats.
Identities = 84/320 (26%), Positives = 156/320 (48%), Gaps = 9/320 (2%)
Query: 7 DLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKD 66
+ F +T + + + F + A++ + +++R+ E ++ +
Sbjct: 2 EAFYSTNMLLLAGLFAAAFCSVVALMWWLMPRD-MQRRI-------EQAGGVSLSPEARP 53
Query: 67 SASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPII 126
SA S R + R + K D + +L AG+RS + + + + ++
Sbjct: 54 SAVSGWAERIADISRPISQLSIPKEGWEDSPLRLRLMNAGWRSSTAAGLYFAAKTALALL 113
Query: 127 FLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDA 186
+LG++ + + + + + L+ G+ P+ ++ +RQ I ++PDA
Sbjct: 114 LPLLGLVALTHMPSI-NTDYTVIALILALLAAFGYYVPNAVLARCRARRQRRIVESFPDA 172
Query: 187 LDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRT 246
LDLL +CVE+G+ +D AL RVA+++ S ++ E+ L + EL ++ A NF RT
Sbjct: 173 LDLLTVCVEAGLGMDAALMRVADEMTLASPEVANELQLMLLELRSGFTKEKALRNFALRT 232
Query: 247 QMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFF 306
+ + L+Q++R+GTSIG SLRV+ R+ R M AE++AA + KL P+I
Sbjct: 233 GAEDIDTFASMLVQAERFGTSIGASLRVMSDTLRTRRRMRAEERAAKIALKLLFPLIFCI 292
Query: 307 LPVLILVIIGPAILSIIDTM 326
P L+ V+IGPA + I +
Sbjct: 293 FPALMTVLIGPAFIHIYRVL 312
>gi|153836407|ref|ZP_01989074.1| Flp pilus assembly protein TadC [Vibrio parahaemolyticus AQ3810]
gi|149750309|gb|EDM61054.1| Flp pilus assembly protein TadC [Vibrio parahaemolyticus AQ3810]
Length = 288
Score = 171 bits (434), Expect = 1e-40, Method: Composition-based stats.
Identities = 59/245 (24%), Positives = 117/245 (47%), Gaps = 8/245 (3%)
Query: 82 NFVKKLNL---KAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGY 138
F+ KL+L + E N L AG SE+ +++++ P++F + I + +
Sbjct: 48 PFIDKLSLHLSRLSFNKEETKNNLVRAGIHSEFIAQAYYLLKII-PLVFCLAFIGYSYIQ 106
Query: 139 DKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGI 198
E F + L V AP ++IS+ + P LDL+ +CV +G+
Sbjct: 107 G---EMEFSSAFISFSLSMLVCLIAPDMYISSRGNANVRHVSSRLPFLLDLMNVCVHTGM 163
Query: 199 SIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQAL 258
+++ +L ++ ++ L+ + T +E + + A FY+ ++ L
Sbjct: 164 TLEASLDYLSNELKTVDENLAYVVKKT-SERAKIVGLDRALTEFYDLVPTTEAQSFVMTL 222
Query: 259 IQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPA 318
QS +YG+S+G L L S+ R ++E E+K +G K+++PMI F + ++++I P
Sbjct: 223 TQSLKYGSSVGAVLASLASDIREINMLELEEKIGKMGAKMSIPMIAFIMIPIVVLIAAPG 282
Query: 319 ILSII 323
I+ ++
Sbjct: 283 IMRML 287
>gi|126454623|ref|YP_001066155.1| type II secretion system protein [Burkholderia pseudomallei 1106a]
gi|242317969|ref|ZP_04816985.1| bacterial type II secretion system protein [Burkholderia
pseudomallei 1106b]
gi|126228265|gb|ABN91805.1| bacterial type II secretion system protein [Burkholderia
pseudomallei 1106a]
gi|242141208|gb|EES27610.1| bacterial type II secretion system protein [Burkholderia
pseudomallei 1106b]
Length = 314
Score = 171 bits (434), Expect = 1e-40, Method: Composition-based stats.
Identities = 72/262 (27%), Positives = 134/262 (51%), Gaps = 1/262 (0%)
Query: 66 DSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPI 125
D + + R ++ + + +++ + + +L +AGFR +++++ ++LVV
Sbjct: 53 DDGARSVPRRVAQRVASLGERVPVVDATQRMKLAARLASAGFREHRAVSVMAGLKLVVGA 112
Query: 126 IFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPD 185
+ + ++ +Y LRV + +G P + ++ +RQ +I PD
Sbjct: 113 CAGLAALALGAHVPRVGDY-VVLRVLMMAGAFVIGMMLPEHALGFVLARRQKTIAAYLPD 171
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
ALDLL+IC +G S+ A+RRVA ++ PL++E + EL + A R
Sbjct: 172 ALDLLVICTNAGNSLAVAIRRVASELKTICPPLADEFSVCADELQIGGDAAFALNAMAAR 231
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
+ +R L+QS +YGT I SLR+L R+ +++ E+KAA L PK+T+PM++F
Sbjct: 232 IGLPSMRALVTTLVQSQQYGTPITQSLRMLSRTERAMQMIALEEKAAKLAPKMTLPMMLF 291
Query: 306 FLPVLILVIIGPAILSIIDTMK 327
+P + L+ GPA++ +I
Sbjct: 292 VMPTVALIAAGPAVIRLIAVFH 313
>gi|167902780|ref|ZP_02489985.1| bacterial type II secretion system protein F domain [Burkholderia
pseudomallei NCTC 13177]
Length = 270
Score = 171 bits (433), Expect = 2e-40, Method: Composition-based stats.
Identities = 72/262 (27%), Positives = 134/262 (51%), Gaps = 1/262 (0%)
Query: 66 DSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPI 125
D + + R ++ + + +++ + + +L +AGFR +++++ ++LVV
Sbjct: 9 DDGARSVPRRVAQRVASLGERVPVVDATQRMKLAARLASAGFREHRAVSVMAGLKLVVGA 68
Query: 126 IFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPD 185
+ + ++ +Y LRV + +G P + ++ +RQ +I PD
Sbjct: 69 CAGLAALALGAHVPRVGDY-VVLRVLMMAGAFVIGMMLPEHALGFVLARRQKTIAAYLPD 127
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
ALDLL+IC +G S+ A+RRVA ++ PL++E + EL + A R
Sbjct: 128 ALDLLVICTNAGNSLAVAIRRVASELKTICPPLADEFSVCADELQIGGDAAFALNAMAAR 187
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
+ +R L+QS +YGT I SLR+L R+ +++ E+KAA L PK+T+PM++F
Sbjct: 188 IGLPSMRALVTTLVQSQQYGTPITQSLRMLSRTERAMQMIALEEKAAKLAPKMTLPMMLF 247
Query: 306 FLPVLILVIIGPAILSIIDTMK 327
+P + L+ GPA++ +I
Sbjct: 248 VMPTVALIAAGPAVIRLIAVFH 269
>gi|197106493|ref|YP_002131870.1| Flp pilus assembly protein [Phenylobacterium zucineum HLK1]
gi|196479913|gb|ACG79441.1| Flp pilus assembly protein [Phenylobacterium zucineum HLK1]
Length = 300
Score = 171 bits (433), Expect = 2e-40, Method: Composition-based stats.
Identities = 64/262 (24%), Positives = 127/262 (48%), Gaps = 1/262 (0%)
Query: 66 DSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPI 125
D + L + ++R ++ ++ + ++L AGF S + I L ++ + I
Sbjct: 40 DKGAGLLPEQVVSTVRRLGQQSAVRDPAKVSLLRSRLMQAGFFSREAPVIFLGIKAAL-I 98
Query: 126 IFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPD 185
+G++ + + + + + P + + R+ +PD
Sbjct: 99 AAATVGVLMTLPVMIGAKGGNMMGLAMAVGLSLAALYGPDQVLKSRKATREREYADGFPD 158
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
LDLL+ VE+G+S+D A+ RV +++ + L+ + + EL R+ A+ F +R
Sbjct: 159 LLDLLVASVEAGLSLDAAVTRVTDELERRYPNLTVHLRFLVLELRAGRARKDAWSAFADR 218
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
++ R L Q++ GTS+GD+L+V + R +R++ AE+KA +L KLTVP+I+F
Sbjct: 219 LAIEDARALATMLRQAEEMGTSLGDTLQVFSQDMRQKRMLRAEEKALALSAKLTVPLILF 278
Query: 306 FLPVLILVIIGPAILSIIDTMK 327
P L+ ++ PA + +I +
Sbjct: 279 IFPSLLTALMLPAAVRMIKVLG 300
>gi|197337342|ref|YP_002157817.1| bipartite nuclear localization signal containing protein [Vibrio
fischeri MJ11]
gi|197314594|gb|ACH64043.1| bipartite nuclear localization signal containing protein [Vibrio
fischeri MJ11]
Length = 293
Score = 170 bits (432), Expect = 2e-40, Method: Composition-based stats.
Identities = 56/245 (22%), Positives = 118/245 (48%), Gaps = 7/245 (2%)
Query: 80 LRNFVKKLNLKAILVD-ENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGY 138
+ + V++ D ++I K +AG ++ + V+ + I GII++
Sbjct: 51 VFDKVERFLPSVASNDADSIERKFYSAGLYESKYAHLYMPVKYLSAAIGS--GIIYLLLG 108
Query: 139 DKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGI 198
+ +V + + V P +S+ + + + P LDLL +CV +G+
Sbjct: 109 K---DSSMTTQVALMCIWLVVCISIPDAILSSRKKALEEKLSGQLPYLLDLLAMCVHTGM 165
Query: 199 SIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQAL 258
+I+ +L +A+++ G L+ + T + + + + A + Y R + +R+ L
Sbjct: 166 TIESSLSYLAKEMQGFDKDLAHMIARTN-DRANIVGLEPALDELYVRVPTNEMRSFVMTL 224
Query: 259 IQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPA 318
QS YG+SI + L L ++ RS RL+ E+K L K++VP+I+F + ++++I P
Sbjct: 225 KQSLHYGSSIYEILNTLAADIRSVRLLSLEEKVGKLAAKMSVPLILFIMIPVVILIAAPG 284
Query: 319 ILSII 323
++ ++
Sbjct: 285 VMRMM 289
>gi|126440858|ref|YP_001058913.1| type II secretion system protein [Burkholderia pseudomallei 668]
gi|254198255|ref|ZP_04904677.1| bacterial type II secretion system protein [Burkholderia
pseudomallei S13]
gi|126220351|gb|ABN83857.1| bacterial type II secretion system protein [Burkholderia
pseudomallei 668]
gi|169654996|gb|EDS87689.1| bacterial type II secretion system protein [Burkholderia
pseudomallei S13]
Length = 314
Score = 170 bits (432), Expect = 2e-40, Method: Composition-based stats.
Identities = 72/262 (27%), Positives = 134/262 (51%), Gaps = 1/262 (0%)
Query: 66 DSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPI 125
D + + R ++ + + +++ + + +L +AGFR +++++ ++LVV
Sbjct: 53 DDGARSMPRRVAQRVASLGERVPVVDATQRMKLAARLASAGFREHRAVSVMAGLKLVVGA 112
Query: 126 IFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPD 185
+ + ++ +Y LRV + +G P + ++ +RQ +I PD
Sbjct: 113 CAGLAALALGAHVPRVGDY-VVLRVLMMAGAFVIGMMLPEHALGFVLARRQKTIAAYLPD 171
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
ALDLL+IC +G S+ A+RRVA ++ PL++E + EL + A R
Sbjct: 172 ALDLLVICTNAGNSLAVAIRRVASELKTICPPLADEFSVCADELQIGGDAAFALNAMAAR 231
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
+ +R L+QS +YGT I SLR+L R+ +++ E+KAA L PK+T+PM++F
Sbjct: 232 IGLPSMRALVTTLVQSQQYGTPITQSLRMLSRTERAMQMIALEEKAAKLAPKMTLPMMLF 291
Query: 306 FLPVLILVIIGPAILSIIDTMK 327
+P + L+ GPA++ +I
Sbjct: 292 VMPTVALIAAGPAVIRLIAVFH 313
>gi|170701756|ref|ZP_02892692.1| type II secretion system protein [Burkholderia ambifaria IOP40-10]
gi|170133339|gb|EDT01731.1| type II secretion system protein [Burkholderia ambifaria IOP40-10]
Length = 337
Score = 170 bits (432), Expect = 2e-40, Method: Composition-based stats.
Identities = 57/278 (20%), Positives = 119/278 (42%), Gaps = 7/278 (2%)
Query: 53 EILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLN--LKAILVDENIVNKLRAAGFRSE 110
+ +++ + Q SRL ++ ++ L+ + ++V E L GF
Sbjct: 62 DESLRKEPDARQAPGQPSRLAQMQARLSVFGMRWLDTSIGRLVVAEEDRLLLEQCGFVDT 121
Query: 111 YSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISN 170
+ + L R+ I+ + I + V + VGF P +++
Sbjct: 122 RTRGLFLSARIACSIVIPLAYIGVV-----GPHVSGTQWWLGVGISFIVGFMVPKLYLRR 176
Query: 171 LVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELS 230
KR+ ++ P +D+L + G+S+DQ+++ V D G LS EM + + +
Sbjct: 177 RAAKRRQAVTDELPLLVDMLRLLQGVGLSLDQSIQVVTNDFKGMMPVLSSEMEIAQRQFA 236
Query: 231 FLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKK 290
R+ + + + + + +R + LIQ D++G ++ + L+ R R ++
Sbjct: 237 AGRTREQSLQRLSSGFENEDLRAIVRLLIQVDKHGGAVQEPLKQFGERLREARRAMLRER 296
Query: 291 AASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMKD 328
L K+T MI+ LP L++V GP ++S++ +
Sbjct: 297 IGRLTVKMTGVMIVTLLPALLIVTAGPGMISVLRALNQ 334
>gi|148657456|ref|YP_001277661.1| type II secretion system protein [Roseiflexus sp. RS-1]
gi|148569566|gb|ABQ91711.1| type II secretion system protein [Roseiflexus sp. RS-1]
Length = 309
Score = 170 bits (431), Expect = 2e-40, Method: Composition-based stats.
Identities = 54/233 (23%), Positives = 108/233 (46%), Gaps = 6/233 (2%)
Query: 96 ENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVIL 155
E + +L AG+ + + + +V ++ ++ + + P + +
Sbjct: 82 EALRLRLAMAGYPWGVTAADFVGAKGIVLVLVTLVAGAFGWMAGA---APTFFNLLLLGG 138
Query: 156 IGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQS 215
IG+ F P VW+S +++RQ+ + A PDALDLL I +G+S + A++ +
Sbjct: 139 IGFCAFFLPDVWLSRRIRQRQTELLNALPDALDLLAIASAAGLSFESAMQEITSKWTN-- 196
Query: 216 VPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVL 275
L+ E + ++S R+ A + RT + + + A+ Q++ G SIG L V
Sbjct: 197 -ELAREFSRVLRDMSMGVPRRQALTDMAERTGVSDIASFVSAVKQAEALGISIGRVLTVQ 255
Query: 276 VSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMKD 328
E R+ R A+++A K+ P++ P + V++GPA+ +++
Sbjct: 256 ADEMRTRRRQRAQERANQAPVKMMFPLVFLIFPAIFAVLLGPAVPQLLEAFGG 308
>gi|301168390|emb|CBW27980.1| putative membrane protein [Bacteriovorax marinus SJ]
Length = 404
Score = 170 bits (431), Expect = 2e-40, Method: Composition-based stats.
Identities = 62/222 (27%), Positives = 102/222 (45%), Gaps = 8/222 (3%)
Query: 102 LRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGF 161
L +AG + ++ + + F I+ FG LE + L + +I G VGF
Sbjct: 187 LASAGLTDVLTPEDFFSFKIFLIVGFPIV----FFGIRVFLEEEWPLTLIPII--GAVGF 240
Query: 162 CAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEE 221
P +WI ++ RQ + A P +D+L + VE+G+ A+ +V E LSEE
Sbjct: 241 VYPDIWIKGRIEMRQKEVIMAMPFCVDMLALSVEAGLDFVAAMTKVVEKAKKT--ALSEE 298
Query: 222 MLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRS 281
I E+ +R A N R + + + LI +D G SIG L+ L E R
Sbjct: 299 FETMIKEIRIGASRAEALRNLAWRIDLIQISSFCATLIAADSVGASIGPILKALSMEIRQ 358
Query: 282 ERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSII 323
++ E EK A+ K+ PM+ +P + +V+ P +L ++
Sbjct: 359 KKSSEVEKAGATAATKILFPMLFLIVPAVFIVVAAPIVLELV 400
>gi|239817416|ref|YP_002946326.1| type II secretion system protein [Variovorax paradoxus S110]
gi|239803993|gb|ACS21060.1| type II secretion system protein [Variovorax paradoxus S110]
Length = 319
Score = 170 bits (431), Expect = 3e-40, Method: Composition-based stats.
Identities = 69/321 (21%), Positives = 134/321 (41%), Gaps = 8/321 (2%)
Query: 8 LFDATELAVAITTAVSIFSLIYA-VVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKD 66
F +LA +++ +I A +I + ++ A++R+ + + +
Sbjct: 2 TFSPNQLATISLALLALGLMIAAGALIAAELRRARSGQVIGRALQRDATGQVDLKTPVDA 61
Query: 67 SASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPII 126
++S LR K+ V + + GF S+ + I LV RL++ +
Sbjct: 62 ESNSSLRADIELPFHWLDSKIG--RAFVADEDRRLIDQCGFASKQAQLIFLVTRLLLAFL 119
Query: 127 FLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDA 186
I+ +I L E + + A + VGF P + + R+ I R P
Sbjct: 120 LPIIS--YIVWKSHLTERTVLVVLAAAFV---VGFMTPKWALGRIAAGRRERIARELPLF 174
Query: 187 LDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRT 246
+DLL + G+S+DQ+L+ +A+D L E+ + S R+ +
Sbjct: 175 VDLLKLLQGVGLSLDQSLQIMADDFSHVLHVLGHELTFANRQYSQGRTREHSLHRLATLH 234
Query: 247 QMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFF 306
+ +R L+Q DR+G ++ + LR+ R R E +++ + K+T M+
Sbjct: 235 GNEDLRGLVSLLVQVDRHGGAVQEPLRIFGERLRERRRSEMKERIGKITVKMTGVMVSTL 294
Query: 307 LPVLILVIIGPAILSIIDTMK 327
LP L++V GP ++I ++
Sbjct: 295 LPALVIVTAGPGFIAIFRSLG 315
>gi|116671481|ref|YP_832414.1| type II secretion system protein [Arthrobacter sp. FB24]
gi|116611590|gb|ABK04314.1| type II secretion system protein [Arthrobacter sp. FB24]
Length = 294
Score = 170 bits (430), Expect = 3e-40, Method: Composition-based stats.
Identities = 64/276 (23%), Positives = 131/276 (47%), Gaps = 11/276 (3%)
Query: 56 RKQQITSLQKDSASSRLRTRDSKSLRNFVKKLN--LKAILVDENIVNKLRAAGFRSEYSL 113
RK + ++ + R K+ + ++ L + L AG + + L
Sbjct: 28 RKARSATVAILTRGRRAVEVPDKARSGLLDRIGYGLAPAAYVRKLDRLLSLAGRPAAWPL 87
Query: 114 NILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQ 173
+L + + ++ L I+ + P + A + + ++G+ P + + +
Sbjct: 88 GRILAAKPALGLVGASLFILI------SMSSPKPIIKLAGLFLLFLGYFIPDLLLYSKGM 141
Query: 174 KRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLP 233
+RQ +++ + LD +LI VE+G+ + A+ R E+ G PL+EE++ T+ ++
Sbjct: 142 ERQKAMQLELANTLDQMLISVEAGLGFEGAMARAGENGKG---PLAEEIIRTLQDMQVGR 198
Query: 234 NRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAAS 293
+R+ ++ RT + +R+ QA++Q+D YG +I LR+ R +R AE+KA
Sbjct: 199 SRRESYLALAERTNIPELRSFVQAIVQADTYGIAISRVLRIQAKVMRVKRRQRAEEKAMK 258
Query: 294 LGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMKDH 329
L + P++ F PVL + I+GPA+++ + T
Sbjct: 259 LPVMILFPLLFFIFPVLFIAILGPAVINTVVTFSGQ 294
>gi|167836788|ref|ZP_02463671.1| type II secretion system protein [Burkholderia thailandensis
MSMB43]
Length = 267
Score = 170 bits (430), Expect = 4e-40, Method: Composition-based stats.
Identities = 51/239 (21%), Positives = 95/239 (39%), Gaps = 6/239 (2%)
Query: 88 NLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQ 147
L +V E L G+ ++ + L R+ I + E
Sbjct: 30 RLGKQIVAEEDRMLLEQCGYVDAHTRGVFLSARIACAIALPAAVAL------AGGETVRT 83
Query: 148 LRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRV 207
V L GF P +++ R+ S+ P +D+L + G+S+DQ+++ V
Sbjct: 84 HLTAWVALCVIAGFMLPKIYVRRRAAARRQSVVDEMPLLVDMLRLLQGVGLSLDQSIQVV 143
Query: 208 AEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTS 267
D G LS E+ + + R+ + + + +R + LIQ D++G +
Sbjct: 144 TNDFKGMLPVLSSELGIAQRQFVAGRTREQSLQRLATSFDNEDLRAIVRLLIQVDKHGGA 203
Query: 268 IGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
+ + L+ R R ++ L K+T MI+ LP L +V GP +L++ +
Sbjct: 204 VQEPLKQFGDRLREVRRAMLRERIGRLTVKMTGVMILTLLPALFIVTAGPGMLAVTHAL 262
>gi|311743553|ref|ZP_07717359.1| type II secretion system protein F protein [Aeromicrobium marinum
DSM 15272]
gi|311312683|gb|EFQ82594.1| type II secretion system protein F protein [Aeromicrobium marinum
DSM 15272]
Length = 298
Score = 170 bits (430), Expect = 4e-40, Method: Composition-based stats.
Identities = 73/310 (23%), Positives = 149/310 (48%), Gaps = 20/310 (6%)
Query: 19 TTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSK 78
+S+ +L A+ + + +R+ V + T L RL+ +
Sbjct: 8 LLGLSLAALCVALGLIQTTDAKTRERLVGVESGGVHVANDGRTGLA------RLQFEGPE 61
Query: 79 SLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGY 138
V + L+ L L AG+ + ++ +L++++ P+I + + F +
Sbjct: 62 DAARLVIPMRLRTRLE-----RNLMLAGYPAGWTWQKILILKIAAPLILAV--AMREFAF 114
Query: 139 DKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGI 198
+ + VG+VI V + P + +S+ ++RQ++++ PDALD ++I +ESG+
Sbjct: 115 SEFSMVNTTVGVGSVI----VAYLLPDLLLSSRARERQAAMELELPDALDKIVISLESGL 170
Query: 199 SIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQAL 258
+ AL AE G ++E++ T+ ++ R+ A+E NRT+ + +R ++L
Sbjct: 171 GFESALMNAAETGKG---DFADELVRTLQDIQVGMPRRAAYEALVNRTESEDIRRFVRSL 227
Query: 259 IQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPA 318
IQ++ G S+ +R ++ R +R + AE KA + KL P+I PVL ++++ P
Sbjct: 228 IQAEETGVSVSTVVRNQSADMRMKRKLRAEGKAQQVSVKLLFPLIFCLFPVLFVIVLAPG 287
Query: 319 ILSIIDTMKD 328
+++ I+ K
Sbjct: 288 VMTAIEGFKG 297
>gi|323495642|ref|ZP_08100713.1| type II secretion system protein F [Vibrio sinaloensis DSM 21326]
gi|323319277|gb|EGA72217.1| type II secretion system protein F [Vibrio sinaloensis DSM 21326]
Length = 296
Score = 169 bits (429), Expect = 4e-40, Method: Composition-based stats.
Identities = 60/279 (21%), Positives = 123/279 (44%), Gaps = 7/279 (2%)
Query: 48 VAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGF 107
+ + R + RK ++ L S S+R+ K ++ I K + AG
Sbjct: 25 LVMYRLVKRKLFLSQLSLKSDSNRMAGFMDFVSEKVAK---PAVESNNQEINEKFKRAGI 81
Query: 108 RSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVW 167
++ + + + L++G + + Y + + + + P
Sbjct: 82 STK---SRWFSFYMPIKYGALLVGGVSFYIYATASDMESASMIAGLATWLILCIILPDAI 138
Query: 168 ISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIA 227
+ + + R + I P LDLL +CV++G++I+ A+ +++++ G L+ +L
Sbjct: 139 LDSRGKARIARISAQLPYLLDLLAVCVQTGMTIESAMNYLSKEMIGFDKELAG-LLKKTN 197
Query: 228 ELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEA 287
E S L Q A + Y +R+ L QS +YG+SI L L + R +++
Sbjct: 198 ERSRLVGMQKALDELYEDIPSSEMRSFVMTLKQSLQYGSSIYGVLTTLAGDIRDVQMLGL 257
Query: 288 EKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
E+K L K++VP+I+F + ++++I P IL ++ +
Sbjct: 258 EEKIGKLAAKMSVPLILFIMIPIVILIAAPGILRMMSNV 296
>gi|84385699|ref|ZP_00988730.1| putative TadC [Vibrio splendidus 12B01]
gi|84379679|gb|EAP96531.1| putative TadC [Vibrio splendidus 12B01]
Length = 290
Score = 169 bits (429), Expect = 4e-40, Method: Composition-based stats.
Identities = 62/250 (24%), Positives = 128/250 (51%), Gaps = 5/250 (2%)
Query: 74 TRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGII 133
T++ SL++ K + + L AG +E+ + ++++V P+IF I+ I
Sbjct: 45 TQEKVSLKDKFLVFTSKLAFNRDEVKANLIKAGIHNEFFSQVYYLIKIV-PMIFCIVTIG 103
Query: 134 WIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLIC 193
+++ +L + VG +LI + AP ++I++ + S I P LDL+ +C
Sbjct: 104 YMYLNSRLDMLNSFMSVGISLLIFLI---APDMYIASRGKSNISHISSRLPFLLDLMNVC 160
Query: 194 VESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRN 253
V +G++++ +L ++ ++ L+ ++ T +E + + A FY+ ++
Sbjct: 161 VHTGMTLEASLEYLSNELKMVDENLAF-VVQTTSERAKVVGLDKALSEFYDLVPTTEAQS 219
Query: 254 ATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILV 313
L QS +YG+S+G L L S+ R ++E E+K +G K++VPMI F + ++++
Sbjct: 220 FVMTLTQSLKYGSSVGAVLASLASDIREINMLELEEKIGKMGAKMSVPMIAFIMIPIVIL 279
Query: 314 IIGPAILSII 323
I P I+ ++
Sbjct: 280 IAAPGIMRML 289
>gi|78486064|ref|YP_391989.1| type II secretion system protein [Thiomicrospira crunogena XCL-2]
gi|78364350|gb|ABB42315.1| Flp (type IV) pilus assembly protein, TadB homolog [Thiomicrospira
crunogena XCL-2]
Length = 296
Score = 169 bits (429), Expect = 4e-40, Method: Composition-based stats.
Identities = 61/313 (19%), Positives = 127/313 (40%), Gaps = 17/313 (5%)
Query: 14 LAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLR 73
+ + +F +V+ + + + + E L+ + Q + +R +
Sbjct: 1 MVWVLLAVAILFFTATLLVVKTFKKNQQAQ------EDIEYLKLRIGLVNQYQANVNRHK 54
Query: 74 TRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGII 133
T +L F+ N K I + L AGFR E+ L ++ + L++ ++
Sbjct: 55 TCHWCALGAFMGPKNEKEINAN---RQFLMNAGFREEHHLGAYFFIKYALVFSSLLVMLV 111
Query: 134 WIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLIC 193
FQ+ IL+ P + R + + A PD LD+ IC
Sbjct: 112 LWSW--------FQVSPIVAILVPLAFLLLPERVLIFWGNHRLNKVNIALPDFLDMANIC 163
Query: 194 VESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRN 253
+ +G+S +A++RV++++ + E I ++ RQ A + F R +++
Sbjct: 164 MSAGLSYLEAIKRVSKELESTFPEICYEFNFLIEQIKIGVPRQEALKQFALRNPSKDIQD 223
Query: 254 ATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILV 313
Q LIQ+++ G+ I +L +R E+KAA K+ + ++ F + ++
Sbjct: 224 LVQMLIQNEKLGSPISTALNEFSRRMYQKRESAMEEKAAKTSAKMAIVILPFLMLPYFML 283
Query: 314 IIGPAILSIIDTM 326
++G I+ +
Sbjct: 284 MLGEKIVMLGRNF 296
>gi|323702118|ref|ZP_08113786.1| Type II secretion system F domain [Desulfotomaculum nigrificans DSM
574]
gi|323533000|gb|EGB22871.1| Type II secretion system F domain [Desulfotomaculum nigrificans DSM
574]
Length = 310
Score = 169 bits (429), Expect = 5e-40, Method: Composition-based stats.
Identities = 68/313 (21%), Positives = 143/313 (45%), Gaps = 12/313 (3%)
Query: 17 AITTAVSIFSLIYAVVIPSLG-SGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTR 75
A+ ++ I + G ++ +RM V +L ++I R
Sbjct: 9 AVLVFFTVSFSILVIYRFIFGERLQVVQRMDQVVGTPSLLPIREIE--LNVPLYQRAIRP 66
Query: 76 DSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWI 135
S+ + + A + + K+ AAG ++ +V++ ++ L +
Sbjct: 67 ALGSIAKLLTRFIPTA--REAALNKKVAAAGQPGNLNVREWMVLKYLLATTLGFL----L 120
Query: 136 FGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVE 195
+ + L+ + + +G+ +P ++++ +++R++ +++A PDALDLL + VE
Sbjct: 121 WSWGGLMSKSLPQCLLLAGVGVPLGWLSPDLFLNARIRQRKNQVEKALPDALDLLTVSVE 180
Query: 196 SGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNAT 255
+G+ D AL +VAE + L++E +L + E R+ A + +R +D +
Sbjct: 181 AGLGFDCALMKVAEQ---SNSVLADEFVLMMQECHMGKPRREALRDMADRVDVDDLSTFC 237
Query: 256 QALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVII 315
++I +D G SIG+ LR + R +R E+ A K+ PM++F P + ++++
Sbjct: 238 GSIILADTLGISIGNILRTQSQQIRQKRRQRTEELAMKAPIKMLFPMVLFIFPAIFVILL 297
Query: 316 GPAILSIIDTMKD 328
GPA L I+ +
Sbjct: 298 GPAALQIMQAFNN 310
>gi|320158388|ref|YP_004190766.1| type II/IV secretion system protein TadC, associated with Flp pilus
assembly [Vibrio vulnificus MO6-24/O]
gi|319933700|gb|ADV88563.1| type II/IV secretion system protein TadC, associated with Flp pilus
assembly [Vibrio vulnificus MO6-24/O]
Length = 292
Score = 169 bits (428), Expect = 7e-40, Method: Composition-based stats.
Identities = 73/318 (22%), Positives = 149/318 (46%), Gaps = 31/318 (9%)
Query: 6 FDLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQK 65
F L A + VA+ +V + I+A+ + E+ R K
Sbjct: 3 FSLPSAIFILVALIVSVVVA--IFALKMWDETRAEISVR--------------------K 40
Query: 66 DSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPI 125
S++ + + +F K+ + + KL AAG S++ + ++V
Sbjct: 41 IIGSTKEQQKRDDLFLSFFKRFSFNK----DETKKKLVAAGIYSDFIAQTYYLFKIV--P 94
Query: 126 IFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPD 185
+FL +G + +++++ + +GA LI +V P +++S+ + P
Sbjct: 95 LFLTIGGGLLAVSQEVIDFNEMILIGAFALIIFVA--GPDLYLSSRTNTITRHVSSRLPF 152
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
LDL+ +CV +G++I+ L +A+++ L+ + +T+ + S + + A E FY
Sbjct: 153 LLDLMNVCVHTGMTIEATLEYLAKELQTVDKYLAFTVNVTV-QRSKVIGIEKALEEFYEM 211
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
++ L+QS ++G+S+G L L ++ R +ME E+K LG K+++PMI+F
Sbjct: 212 VPSSEAQSFVMTLVQSLQFGSSVGQVLGTLATDIRQINMMELEEKIGKLGAKMSIPMIVF 271
Query: 306 FLPVLILVIIGPAILSII 323
+ +I++II P I+ ++
Sbjct: 272 IMVPIIILIIAPGIMRML 289
>gi|313902406|ref|ZP_07835809.1| Type II secretion system F domain [Thermaerobacter subterraneus DSM
13965]
gi|313467337|gb|EFR62848.1| Type II secretion system F domain [Thermaerobacter subterraneus DSM
13965]
Length = 326
Score = 169 bits (428), Expect = 7e-40, Method: Composition-based stats.
Identities = 69/312 (22%), Positives = 132/312 (42%), Gaps = 12/312 (3%)
Query: 19 TTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSK 78
+ + A++ PS + + ++ R + Q S R+ +
Sbjct: 21 LVFMIVALTTLALLAPS-EAEHIARKRLRDLRLRGVPPDQAEQEELARPFSQRVLRPAWE 79
Query: 79 SLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGII---WI 135
+ ++ + + L AAG L L ++ L+ G + W+
Sbjct: 80 RMVEAAERWTPQGVAA--RWERLLAAAG--RPLGLGTLAFLKAAGAAAGLVPGWVAGGWL 135
Query: 136 FGYDKLLEYPFQLRVGAVILIGYV-GFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICV 194
V +G G+ P + +R+ + RA PD +DLL + V
Sbjct: 136 AAGMSGAGAAGAAFQPVVAALGAATGWILPDAALKARATRRKRQLARALPDVMDLLSVAV 195
Query: 195 ESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNA 254
E+G+ +D A+++V E P+S E + EL +R+ A + +R ++ +R+
Sbjct: 196 EAGLGLDGAVQKVTEKF---PAPVSTEFRQYLKELRLGVSREEALRSLADRAELPELRSF 252
Query: 255 TQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVI 314
A+IQ+DR G S+ LRV + R +R AE++A K+ +P+++F P L +V+
Sbjct: 253 AAAVIQADRLGVSLARVLRVQAEQLRFQRKQRAEEQAMKTPIKMLLPLVLFIFPTLFIVL 312
Query: 315 IGPAILSIIDTM 326
+GPA++ I+
Sbjct: 313 LGPALIQILSAF 324
>gi|170696831|ref|ZP_02887931.1| type II secretion system protein [Burkholderia graminis C4D1M]
gi|170138259|gb|EDT06487.1| type II secretion system protein [Burkholderia graminis C4D1M]
Length = 372
Score = 168 bits (427), Expect = 7e-40, Method: Composition-based stats.
Identities = 51/238 (21%), Positives = 101/238 (42%), Gaps = 5/238 (2%)
Query: 91 AILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRV 150
+V + L GF + + L+ R+ I+ ++ G V
Sbjct: 137 RQVVAQEDRRLLEQCGFVDARARGLFLMARIAGAIMLPLVA-----GPIAHAHVDGPRYV 191
Query: 151 GAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAED 210
VI+ G AP + + R+ ++ P +DLL + G+S+DQ+L+ + D
Sbjct: 192 LVVIVAFMCGVMAPKLVLRRRAAARRGAVVDELPMLVDLLRLLQGVGLSLDQSLQVMVND 251
Query: 211 IGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGD 270
G L+ E+ + + + R+ + + + +R + LIQ DR+G ++ +
Sbjct: 252 FRGVLPVLASELEIAQGQFAAGRTREQSLSRLASSFDNEDLRAVVRLLIQVDRHGGAVQE 311
Query: 271 SLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMKD 328
L+ R R ++ + K+T MI+ LP L++V GP ++S+ ++K
Sbjct: 312 PLKQFGDRLRETRRAMLRERIGRMAVKMTGVMILTLLPALMIVTAGPGVMSVSHSLKS 369
>gi|42522078|ref|NP_967458.1| Flp pilus assembly protein TadC [Bdellovibrio bacteriovorus HD100]
gi|39574609|emb|CAE78451.1| Flp pilus assembly protein TadC [Bdellovibrio bacteriovorus HD100]
Length = 258
Score = 168 bits (427), Expect = 8e-40, Method: Composition-based stats.
Identities = 50/237 (21%), Positives = 113/237 (47%), Gaps = 6/237 (2%)
Query: 87 LNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPF 146
+ +++ + + ++ +G SE + + + ++ + I+F I +I F
Sbjct: 24 MKIRSESYRKKVRKYIKTSGLSSELNEDEFIGLQFLWGIMFPIFLLIMNFSLQ------L 77
Query: 147 QLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRR 206
L V+ +G +GF P + ++R+ S++ P +DLL + VE+G+ A+++
Sbjct: 78 GLSPMVVVGMGLIGFYLPQIHARGEKKRRELSVRADLPFFIDLLALSVEAGLDFFSAIQK 137
Query: 207 VAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGT 266
+ + G L+EE + + ++ ++ A + R M+ + + L+ ++ G
Sbjct: 138 IVDKANGTDSVLAEEFSIVLKDIKIGSSKAQALKEMAERLDMNEITSFVAVLVDAESTGA 197
Query: 267 SIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSII 323
SI L+ + R ER + AEK A + +P+++F LP + +++ GP +S +
Sbjct: 198 SISQVLKDQSVQMRLERFVRAEKAGAQASQTMLIPLMLFILPAVFIIVFGPVAVSFM 254
>gi|37680188|ref|NP_934797.1| Flp pilus assembly protein TadC [Vibrio vulnificus YJ016]
gi|37198935|dbj|BAC94768.1| Flp pilus assembly protein TadC [Vibrio vulnificus YJ016]
Length = 293
Score = 168 bits (427), Expect = 8e-40, Method: Composition-based stats.
Identities = 62/234 (26%), Positives = 124/234 (52%), Gaps = 4/234 (1%)
Query: 94 VDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAV 153
+ L AGF +L+ LL+ + I ++ ++ + E + +
Sbjct: 62 EKARLSRLLANAGFHKPQALSWLLLAKFGSGI---LVALLLLMRQSINGEAIVSMWSLTL 118
Query: 154 ILIGYV-GFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIG 212
+L+GYV G P W++ + + +K++ PDA+DLL++CVESG+S+++A RVA +
Sbjct: 119 VLVGYVLGANGPEWWLNLNADRYRKKLKQSAPDAIDLLVLCVESGLSLNRAFERVARYLQ 178
Query: 213 GQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSL 272
Q P++E+ +T AEL L +R A N RT + + L +D+YG+ + D+L
Sbjct: 179 EQHAPMAEQFRVTSAELDLLNDRTQALNNLSWRTGIPELHTLATTLTMADKYGSPLADTL 238
Query: 273 RVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
R + + R +R ++ E++A L K+T+ + + +++++I P + ++ ++
Sbjct: 239 RQISEDARRQRALDIEERAGKLPGKITLIQMTMIMLPMLVMVISPILSQLLTSL 292
>gi|148974880|ref|ZP_01811860.1| Flp pilus assembly protein TadC [Vibrionales bacterium SWAT-3]
gi|145965389|gb|EDK30638.1| Flp pilus assembly protein TadC [Vibrionales bacterium SWAT-3]
Length = 288
Score = 168 bits (427), Expect = 8e-40, Method: Composition-based stats.
Identities = 65/250 (26%), Positives = 124/250 (49%), Gaps = 5/250 (2%)
Query: 74 TRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGII 133
TR+ K + K + + + KL AAGF S++ + ++++V I LIL I
Sbjct: 43 TREEKKRTDLFKSILSRISFNKDETKRKLVAAGFYSDFLADAYYLLKIVPFSICLIL--I 100
Query: 134 WIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLIC 193
Y E F L L+ +V AP ++S + I P LDL+ +C
Sbjct: 101 GFDFYSGETEVLFSLLYLLGALLAFV--IAPDAYVSARGKANIKHISSRLPFLLDLMNVC 158
Query: 194 VESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRN 253
V +G++I+ +L +A+++ L+ + +T+ E S L + A E FY ++
Sbjct: 159 VHTGMTIESSLEYLAKELHSIDSNLAHVVRVTV-ERSRLVGLEKALEEFYALVPTSESQS 217
Query: 254 ATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILV 313
++QS ++G+S+G L L ++ R +M+ E++ +G K+++P+I F + ++++
Sbjct: 218 FVMTMVQSLQFGSSVGPVLATLATDIRELNMMDLEERIGKMGAKMSIPLIAFIMVPIVVL 277
Query: 314 IIGPAILSII 323
I P IL ++
Sbjct: 278 IAAPGILRML 287
>gi|209809175|ref|YP_002264713.1| bacterial type II secretion system protein F [Aliivibrio
salmonicida LFI1238]
gi|208010737|emb|CAQ81128.1| bacterial type II secretion system protein F [Aliivibrio
salmonicida LFI1238]
Length = 292
Score = 168 bits (427), Expect = 9e-40, Method: Composition-based stats.
Identities = 57/268 (21%), Positives = 126/268 (47%), Gaps = 6/268 (2%)
Query: 59 QITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLV 118
Q +L K AS+ + TR+ + + L +++ K +AGF ++ +
Sbjct: 30 QRKALLKFLASNEILTRNENVINKVEQFLPSSVSTNADDVERKFYSAGFYQFKWAHLYMP 89
Query: 119 VRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSS 178
+ +G + I+ + P ++ I + + P + +++ ++ +
Sbjct: 90 AKYAAA----AIGGVTIYWLSRSDTDPKEIIAYMCIWL-VICILIPDLILNSRIKTLRDK 144
Query: 179 IKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVA 238
+ P LDLL +CV +G++I+ ++ +A+++ G L+ + T + + + VA
Sbjct: 145 LSSQLPYLLDLLAMCVHTGMTIESSMAYLAKEMRGFDKDLAHMVSRTN-DRARIVGLSVA 203
Query: 239 FENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKL 298
+ Y + + +R+ L QS YG+SI L L + R+ RL+ E+K L K+
Sbjct: 204 LDELYIKVPTNEMRSFVMTLKQSLHYGSSIYGILNTLAEDIRNVRLLSLEEKVGKLAAKM 263
Query: 299 TVPMIIFFLPVLILVIIGPAILSIIDTM 326
+VP+I+F + ++++I P I+ ++ +
Sbjct: 264 SVPLILFIMIPVVILIAAPGIMRMMSGV 291
>gi|167620218|ref|ZP_02388849.1| hypothetical protein BthaB_28185 [Burkholderia thailandensis Bt4]
Length = 268
Score = 168 bits (427), Expect = 9e-40, Method: Composition-based stats.
Identities = 55/263 (20%), Positives = 107/263 (40%), Gaps = 8/263 (3%)
Query: 64 QKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVV 123
++ ++ L +R +L +V E L G+ ++ I L R+
Sbjct: 9 RRSRFATLLDRAGKFGMRLLDTRLG--KQIVAEEDRMLLEQCGYVDAHTRGIFLSARIAC 66
Query: 124 PIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAW 183
I + +FG + + V L GF P +++ R+ S+
Sbjct: 67 SIALP--AAVALFGSATVRTH----LSAWVALSVIAGFMLPKIYVRRRAAARRQSVVDEM 120
Query: 184 PDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFY 243
P +D+L + G+S+DQ+++ V D G LS E+ + + R+ + +
Sbjct: 121 PLLVDMLRLLQGVGLSLDQSIQVVTNDFKGMLPVLSSELGIAQRQFVAGRTREQSLQRLA 180
Query: 244 NRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMI 303
+ +R + LIQ D++G ++ + L+ R R ++ L K+T MI
Sbjct: 181 TSFDNEDLRAIVRLLIQVDKHGGAVQEPLKQFGDRLREVRRAMLRERIGRLTVKMTGVMI 240
Query: 304 IFFLPVLILVIIGPAILSIIDTM 326
+ LP L +V GP +L++ +
Sbjct: 241 LTLLPALFIVTAGPGMLAVTHAL 263
>gi|59713408|ref|YP_206183.1| bipartite nuclear localization signal containing protein [Vibrio
fischeri ES114]
gi|59481656|gb|AAW87295.1| bipartite nuclear localization signal containing protein [Vibrio
fischeri ES114]
Length = 303
Score = 168 bits (426), Expect = 9e-40, Method: Composition-based stats.
Identities = 61/265 (23%), Positives = 122/265 (46%), Gaps = 6/265 (2%)
Query: 59 QITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLV 118
Q L K A + +D + L A ++I K +AG ++ +
Sbjct: 41 QRKLLGKYLAKHKEFNKDDNVFDKVERFLPSVASNDADSIERKFYSAGLYESKYAHLYMP 100
Query: 119 VRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSS 178
V+ + I GII++ + +V + + V P +S+ + +
Sbjct: 101 VKYLTAAIGS--GIIYLLLGK---DSSMTTQVALMCIWLVVCISIPDAILSSRKKALEEK 155
Query: 179 IKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVA 238
+ P LDLL +CV +G++I+ +L +A+++ G L+ + T + + + + A
Sbjct: 156 LSGQLPYLLDLLAMCVHTGMTIESSLSYLAKEMQGFDKDLAHMIARTN-DRANIVGLEPA 214
Query: 239 FENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKL 298
+ Y R + +R+ L QS YG+SI + L L ++ RS RL+ E+K L K+
Sbjct: 215 LDELYVRVPTNEMRSFVMTLKQSLHYGSSIYEILNTLAADIRSVRLLSLEEKVGKLAAKM 274
Query: 299 TVPMIIFFLPVLILVIIGPAILSII 323
+VP+I+F + ++++I P ++ ++
Sbjct: 275 SVPLILFIMIPVVILIAAPGVMRMM 299
>gi|167821658|ref|ZP_02453338.1| bacterial type II secretion system protein F domain [Burkholderia
pseudomallei 91]
Length = 266
Score = 168 bits (426), Expect = 1e-39, Method: Composition-based stats.
Identities = 72/261 (27%), Positives = 133/261 (50%), Gaps = 1/261 (0%)
Query: 67 SASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPII 126
A + R ++ + + +++ + + +L +AGFR +++++ ++LVV
Sbjct: 6 RAGRSVPRRVAQRVASLGERVPVVDATQRMKLAARLASAGFREHRAVSVMAGLKLVVGAC 65
Query: 127 FLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDA 186
+ + ++ +Y LRV + +G P + ++ +RQ +I PDA
Sbjct: 66 AGLAALALGAHVPRVGDY-VVLRVLMMAGAFVIGMMLPEHALGFVLARRQKTIAAYLPDA 124
Query: 187 LDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRT 246
LDLL+IC +G S+ A+RRVA ++ PL++E + EL + A R
Sbjct: 125 LDLLVICTNAGNSLAVAIRRVASELKTICPPLADEFSVCADELQIGGDAAFALNAMAARI 184
Query: 247 QMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFF 306
+ +R L+QS +YGT I SLR+L R+ +++ E+KAA L PK+T+PM++F
Sbjct: 185 GLPSMRALVTTLVQSQQYGTPITQSLRMLSRTERAMQMIALEEKAAKLAPKMTLPMMLFV 244
Query: 307 LPVLILVIIGPAILSIIDTMK 327
+P + L+ GPA++ +I
Sbjct: 245 MPTVALIAAGPAVIRLIAVFH 265
>gi|320156058|ref|YP_004188437.1| flp pilus assembly protein TadC [Vibrio vulnificus MO6-24/O]
gi|319931370|gb|ADV86234.1| flp pilus assembly protein TadC [Vibrio vulnificus MO6-24/O]
Length = 293
Score = 168 bits (426), Expect = 1e-39, Method: Composition-based stats.
Identities = 71/272 (26%), Positives = 138/272 (50%), Gaps = 9/272 (3%)
Query: 56 RKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNI 115
RK++ L + + + SL + N KA L L AGF +L+
Sbjct: 29 RKRREARLSHYVKRQAVASSSNHSLMHNWITQNEKARLS-----RLLANAGFHKPQALSW 83
Query: 116 LLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYV-GFCAPSVWISNLVQK 174
LL+ + I ++ ++ + E + ++L+GYV G P W++ +
Sbjct: 84 LLLAKFGSGI---LVALLLLMRQSINGEAIVSMWSLTLVLVGYVLGANGPEWWLNLNADR 140
Query: 175 RQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPN 234
+ +K++ PDA+DLL++CVESG+S+++A RVA + Q P++E+ +T AEL L +
Sbjct: 141 YRKKLKQSAPDAIDLLVLCVESGLSLNRAFERVARYLQEQHAPMAEQFRVTSAELDLLND 200
Query: 235 RQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASL 294
R A N RT + + L +D+YG+ + D+LR + + R +R ++ E++A L
Sbjct: 201 RTQALNNLSWRTGIPELHTLATTLTMADKYGSPLADTLRQISEDARRQRALDIEERAGKL 260
Query: 295 GPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
K+T+ + + +++++I P + ++ ++
Sbjct: 261 PGKITLIQMTMIMLPMLVMVISPILSQLLASL 292
>gi|167587310|ref|ZP_02379698.1| type II secretion system protein [Burkholderia ubonensis Bu]
Length = 264
Score = 168 bits (425), Expect = 1e-39, Method: Composition-based stats.
Identities = 54/263 (20%), Positives = 116/263 (44%), Gaps = 6/263 (2%)
Query: 65 KDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVP 124
+ + ++L R S + ++ + I+ DE+ L G+ + + L R+
Sbjct: 4 RRARVAQLLERMSTAGARWLDTGFGRHIVADED-RRLLEQCGYVDARTRGLFLSARIAGA 62
Query: 125 IIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWP 184
++ +L + ++ + V ++L GF P + I R+ ++ P
Sbjct: 63 LVAPVLFLAFVGPRLHGGRW-----VLGLVLAFVTGFMLPKILIRRRAAARRQAVVDELP 117
Query: 185 DALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYN 244
+D+L + G+S+DQ+L+ V D G LS EM + + + R+ + + +
Sbjct: 118 LLVDMLRLLQGVGLSLDQSLQVVTNDFRGMMPVLSSEMGIAQRQFAAGRTREQSLQRLAS 177
Query: 245 RTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMII 304
+ +R + +IQ D++G ++ + L+ R R ++ L K+T MI+
Sbjct: 178 GFDNEDLRAIVRLMIQVDKHGGAVQEPLKQFGDRLREARRAMLRERIGRLTVKMTGVMIV 237
Query: 305 FFLPVLILVIIGPAILSIIDTMK 327
LP L++V GP ++S++ +
Sbjct: 238 TLLPALLIVTAGPGMISVMHALS 260
>gi|284991838|ref|YP_003410392.1| Type II secretion system F domain-containing protein
[Geodermatophilus obscurus DSM 43160]
gi|284065083|gb|ADB76021.1| Type II secretion system F domain protein [Geodermatophilus
obscurus DSM 43160]
Length = 295
Score = 168 bits (425), Expect = 1e-39, Method: Composition-based stats.
Identities = 58/184 (31%), Positives = 98/184 (53%), Gaps = 3/184 (1%)
Query: 145 PFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQAL 204
P L V + + V + P + + + Q+RQ +I D LD + I VE+G+ + A+
Sbjct: 115 PGPLTVLMAVGVTGVAYVVPELLLYSRGQERQQAIALELADTLDQMTIAVEAGLGFEAAM 174
Query: 205 RRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRY 264
R + G PL+EE++ T+ +++ R+ A+ RT + +R +A++Q+D Y
Sbjct: 175 ARAGRNGRG---PLAEELVRTLQDIAVGQPRREAYLALAERTAVPDLRRFIRAVVQADAY 231
Query: 265 GTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIID 324
G SI D LR +E R +R AE+KA + K+ P+I+ LP L +V++GPA+L I
Sbjct: 232 GVSIADVLRTQAAEMRLKRRQRAEEKAMQIPVKVIFPLILCILPTLFIVLLGPAVLDIAA 291
Query: 325 TMKD 328
Sbjct: 292 AFGG 295
>gi|332284566|ref|YP_004416477.1| hypothetical protein PT7_1313 [Pusillimonas sp. T7-7]
gi|330428519|gb|AEC19853.1| hypothetical protein PT7_1313 [Pusillimonas sp. T7-7]
Length = 291
Score = 168 bits (425), Expect = 1e-39, Method: Composition-based stats.
Identities = 50/181 (27%), Positives = 90/181 (49%), Gaps = 2/181 (1%)
Query: 143 EYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQ 202
+ + + G +G P W+ L ++RQ + R +P LD+ +CVE+G+++
Sbjct: 109 DARLAHILLPCLGAGLIGMLWPRYWLHGLARQRQFQMLREFPFLLDMTTLCVEAGLNLHG 168
Query: 203 ALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSD 262
AL++ A+ G PL E+ +A++ R A + +R + V++ AL Q+D
Sbjct: 169 ALQQAAQ--HGPDGPLRGELRHALADMRAGVPRIQALQELADRCGLPAVQSLVTALAQAD 226
Query: 263 RYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
+ G S+G LR + R+ER + AEK A K+ PM+ P L+I P ++ +
Sbjct: 227 QLGMSLGPLLRSQSEQRRAERFLRAEKLALEAPVKMLFPMVFCIFPCTFLIIGFPIVIKL 286
Query: 323 I 323
+
Sbjct: 287 L 287
>gi|121607251|ref|YP_995058.1| type II secretion system protein [Verminephrobacter eiseniae
EF01-2]
gi|121551891|gb|ABM56040.1| type II secretion system protein [Verminephrobacter eiseniae
EF01-2]
Length = 313
Score = 168 bits (425), Expect = 2e-39, Method: Composition-based stats.
Identities = 55/241 (22%), Positives = 103/241 (42%), Gaps = 13/241 (5%)
Query: 96 ENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLL-----------EY 144
+ KLR AG + R+V + L + +D L
Sbjct: 73 RTLQLKLRQAGLDYTLDPAQFIASRIVSAFVATALLWWAVSSFDGLPIGAGGVDAARRYI 132
Query: 145 PFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQAL 204
+ A+ + +G+ P++W+ + + R+ + R P LD++ +CVE+G+++ A+
Sbjct: 133 ATGTYLQAMAIGALLGWFYPAIWLKDRIALRRRELLRMMPFFLDIITLCVEAGLNMHGAI 192
Query: 205 RRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRY 264
+ G + EE + ++ R + + R V A+IQ++R
Sbjct: 193 AQAVAK--GPQGTVREEFQRVLRDVRAGKARTESLRDMAERLNEPGVTQFVMAVIQAERM 250
Query: 265 GTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIID 324
G ++G LR + RSER + AEK A K+ +P+I F P +V++ P + I+
Sbjct: 251 GMNLGPVLRAQADQQRSERFLRAEKLAMEAPVKMLLPLIAFIFPCTFIVLLFPIAMKFIN 310
Query: 325 T 325
T
Sbjct: 311 T 311
>gi|167824262|ref|ZP_02455733.1| bacterial type II secretion system protein F domain [Burkholderia
pseudomallei 9]
gi|167919042|ref|ZP_02506133.1| bacterial type II secretion system protein F domain [Burkholderia
pseudomallei BCC215]
Length = 246
Score = 167 bits (424), Expect = 2e-39, Method: Composition-based stats.
Identities = 70/231 (30%), Positives = 122/231 (52%), Gaps = 1/231 (0%)
Query: 97 NIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILI 156
+ +L +AGFR +++++ ++LVV + + ++ +Y LRV +
Sbjct: 16 KLAARLASAGFREHRAVSVMAGLKLVVGACAGLAALALGAHVPRVGDY-VVLRVLMMAGA 74
Query: 157 GYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSV 216
+G P + ++ +RQ +I PDALDLL+IC +G S+ A+RRVA ++
Sbjct: 75 FVIGMMLPEHALGFVLARRQKTIAAYLPDALDLLVICTNAGNSLAVAIRRVASELKTICP 134
Query: 217 PLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLV 276
PL++E + EL + A R + +R L+QS +YGT I SLR+L
Sbjct: 135 PLADEFSVCADELQIGGDAAFALNAMAARIGLPSMRALVTTLVQSQQYGTPITQSLRMLS 194
Query: 277 SETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
R+ +++ E+KAA L PK+T+PM++F +P + L+ GPA++ +I
Sbjct: 195 RTERAMQMIALEEKAAKLAPKMTLPMMLFVMPTVALIAAGPAVIRLIAVFH 245
>gi|27365656|ref|NP_761184.1| type II/IV secretion system protein TadC [Vibrio vulnificus CMCP6]
gi|27361804|gb|AAO10711.1| Type II/IV secretion system protein TadC, associated with Flp pilus
assembly [Vibrio vulnificus CMCP6]
Length = 293
Score = 167 bits (423), Expect = 2e-39, Method: Composition-based stats.
Identities = 67/268 (25%), Positives = 135/268 (50%), Gaps = 8/268 (2%)
Query: 64 QKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRA----AGFRSEYSLNILLVV 119
Q+ +RL + +L + +N +L AGF +L+ LL+
Sbjct: 28 QRKRREARLSHYVKRQAAASSSNHSLMHNWITQNEKARLSRLLANAGFHKPQALSWLLLA 87
Query: 120 RLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYV-GFCAPSVWISNLVQKRQSS 178
+ I ++ ++ + E + ++L+GYV G P W++ + +
Sbjct: 88 KFGSGI---LVALLLLMRQSINGEAIVSMLSLTLVLVGYVLGANGPEWWLNLNADRYRKK 144
Query: 179 IKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVA 238
+K++ PDA+DLL++CVESG+S+++A RVA + Q P++E+ +T AEL L +R A
Sbjct: 145 LKQSAPDAIDLLVLCVESGLSLNRAFERVARYLQEQHAPMAEQFRVTSAELDLLNDRTQA 204
Query: 239 FENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKL 298
N RT + + L +D+YG+ + D+LR + + R +R ++ E++A L K+
Sbjct: 205 LNNLSWRTGIPELHTLATTLTMADKYGSPLADTLRQISEDARRQRALDIEERAGKLPGKI 264
Query: 299 TVPMIIFFLPVLILVIIGPAILSIIDTM 326
T+ + + +++++I P + ++ ++
Sbjct: 265 TLIQMTMIMLPMLVMVISPILSQLLTSL 292
>gi|167738668|ref|ZP_02411442.1| bacterial type II secretion system protein F domain [Burkholderia
pseudomallei 14]
Length = 253
Score = 167 bits (423), Expect = 2e-39, Method: Composition-based stats.
Identities = 71/253 (28%), Positives = 131/253 (51%), Gaps = 1/253 (0%)
Query: 75 RDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIW 134
R ++ + + +++ + + +L +AGFR +++++ ++LVV + +
Sbjct: 1 RVAQRVASLGERVPVVDATQRMKLAARLASAGFREHRAVSVMAGLKLVVGACAGLAALAL 60
Query: 135 IFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICV 194
++ +Y LRV + +G P + ++ +RQ +I PDALDLL+IC
Sbjct: 61 GAHVPRVGDY-VVLRVLMMAGAFVIGMMLPEHALGFVLARRQKTIAAYLPDALDLLVICT 119
Query: 195 ESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNA 254
+G S+ A+RRVA ++ PL++E + EL + A R + +R
Sbjct: 120 NAGNSLAVAIRRVASELKTICPPLADEFSVCADELQIGGDAAFALNAMAARIGLPSMRAL 179
Query: 255 TQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVI 314
L+QS +YGT I SLR+L R+ +++ E+KAA L PK+T+PM++F +P + L+
Sbjct: 180 VTTLVQSQQYGTPITQSLRMLSRTERAMQMIALEEKAAKLAPKMTLPMMLFVMPTVALIA 239
Query: 315 IGPAILSIIDTMK 327
GPA++ +I
Sbjct: 240 AGPAVIRLIAVFH 252
>gi|261251593|ref|ZP_05944167.1| type II/IV secretion system protein TadC associated with Flp pilus
assembly [Vibrio orientalis CIP 102891]
gi|260938466|gb|EEX94454.1| type II/IV secretion system protein TadC associated with Flp pilus
assembly [Vibrio orientalis CIP 102891]
Length = 284
Score = 167 bits (423), Expect = 2e-39, Method: Composition-based stats.
Identities = 58/245 (23%), Positives = 116/245 (47%), Gaps = 6/245 (2%)
Query: 84 VKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLE 143
V + + + KL G+ S + +I + R I G++W + + L
Sbjct: 45 VSRGGILRWARNPKRAQKLAMFGYVSSQAESIFMTARAS---AMTIAGVVWFY--SQQLS 99
Query: 144 YPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQA 203
V++ +G + V + I + PDALDL+++CV SG S++
Sbjct: 100 VDVGGFAQCVVVALSIGIVI-DRALDWRVNVVRQEIAKNIPDALDLMVVCVSSGQSLEAT 158
Query: 204 LRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDR 263
V +++ S LS E L+T E++ L + QVA N R + V N + Q+ +
Sbjct: 159 FNTVGQEMKSISPSLSREWLVTATEMAVLDSPQVALTNLDTRLALPEVNNMIVTMSQALK 218
Query: 264 YGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSII 323
+GT + D+L+++ S+ R ++E E+ + K++ P+++ + ++++I+ P +LS+
Sbjct: 219 FGTPMADALKLIASDNRQYHMLELEEWVGKIPAKMSFPLVVLIMLPVVVIIVAPMVLSLF 278
Query: 324 DTMKD 328
T+
Sbjct: 279 QTLGQ 283
>gi|167570100|ref|ZP_02362974.1| hypothetical protein BoklC_09666 [Burkholderia oklahomensis C6786]
Length = 261
Score = 166 bits (422), Expect = 3e-39, Method: Composition-based stats.
Identities = 53/239 (22%), Positives = 96/239 (40%), Gaps = 6/239 (2%)
Query: 88 NLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQ 147
L +V + L G+ ++ I L R+ I I E
Sbjct: 24 RLGKQIVADEDRMLLEQCGYVDAHTRGIFLSARIACGIALPAAVAI------VGDETVAT 77
Query: 148 LRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRV 207
V L VGF P +++ R+ S+ P +D+L + G+S+DQ+++ V
Sbjct: 78 HLSAWVALSVIVGFMLPKIYVRRRAAARRQSVVDEMPLLVDMLRLLQGVGLSLDQSIQVV 137
Query: 208 AEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTS 267
D G LS E+ + + R+ + + + +R + LIQ D++G +
Sbjct: 138 TNDFKGMLPVLSSELGIAQRQFVAGRTREQSLQRLATSFDNEDLRAIVRLLIQVDKHGGA 197
Query: 268 IGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
+ + L+ R R ++ L K+T MI+ LP L +V GP +L++ +
Sbjct: 198 VQEPLKQFGDRLREVRRAMLRERIGRLTVKMTGVMIVTLLPALFIVTAGPGMLAVAHAL 256
>gi|218676254|ref|YP_002395073.1| putative Flp pilus assembly protein TadC [Vibrio splendidus LGP32]
gi|218324522|emb|CAV26000.1| putative Flp pilus assembly protein TadC [Vibrio splendidus LGP32]
Length = 288
Score = 166 bits (422), Expect = 3e-39, Method: Composition-based stats.
Identities = 62/266 (23%), Positives = 130/266 (48%), Gaps = 9/266 (3%)
Query: 58 QQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILL 117
+ +K S+R + L+ + +++ I KL AAGF S++ +
Sbjct: 31 RANIETRKIIGSTREEKKRKDLLKAVLSQISFNKI----ETKRKLVAAGFYSDFLADAYY 86
Query: 118 VVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQS 177
+++++ + L+L I Y+ E F L L+ ++ AP ++S +
Sbjct: 87 LLKIIPFSVCLVL--IGFDFYNGETEVIFALLYLLGALLAFI--IAPDSYVSARGKANIK 142
Query: 178 SIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQV 237
I P LDL+ +CV +G++I+ +L +A+++ L+ + +T+ E S L +
Sbjct: 143 HISSRLPFLLDLMNVCVHTGMTIESSLEYLAKELHSVDSNLAHVVRVTV-ERSRLVGLEK 201
Query: 238 AFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPK 297
A E FY ++ ++QS ++G+S+G L L ++ R +M+ E++ +G K
Sbjct: 202 ALEEFYELVPTSESQSFVMTMVQSLQFGSSVGPVLATLATDIRELNMMDLEERIGKMGAK 261
Query: 298 LTVPMIIFFLPVLILVIIGPAILSII 323
+++P+I F + ++++I P IL ++
Sbjct: 262 MSIPLIAFIMVPIVVLIAAPGILRML 287
>gi|167845808|ref|ZP_02471316.1| bacterial type II secretion system protein F domain [Burkholderia
pseudomallei B7210]
gi|167894380|ref|ZP_02481782.1| bacterial type II secretion system protein F domain [Burkholderia
pseudomallei 7894]
Length = 237
Score = 166 bits (422), Expect = 3e-39, Method: Composition-based stats.
Identities = 70/231 (30%), Positives = 122/231 (52%), Gaps = 1/231 (0%)
Query: 97 NIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILI 156
+ +L +AGFR +++++ ++LVV + + ++ +Y LRV +
Sbjct: 7 KLAARLASAGFREHRAVSVMAGLKLVVGACAGLAALALGAHVPRVGDY-VVLRVLMMAGA 65
Query: 157 GYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSV 216
+G P + ++ +RQ +I PDALDLL+IC +G S+ A+RRVA ++
Sbjct: 66 FVIGMMLPEHALGFVLARRQKTIAAYLPDALDLLVICTNAGNSLAVAIRRVASELKTICP 125
Query: 217 PLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLV 276
PL++E + EL + A R + +R L+QS +YGT I SLR+L
Sbjct: 126 PLADEFSVCADELQIGGDAAFALNAMAARIGLPSMRALVTTLVQSQQYGTPITQSLRMLS 185
Query: 277 SETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
R+ +++ E+KAA L PK+T+PM++F +P + L+ GPA++ +I
Sbjct: 186 RTERAMQMIALEEKAAKLAPKMTLPMMLFVMPTVALIAAGPAVIRLIAVFH 236
>gi|167582055|ref|ZP_02374929.1| hypothetical protein BthaT_28187 [Burkholderia thailandensis TXDOH]
Length = 278
Score = 166 bits (422), Expect = 3e-39, Method: Composition-based stats.
Identities = 55/263 (20%), Positives = 107/263 (40%), Gaps = 8/263 (3%)
Query: 64 QKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVV 123
++ ++ L +R +L +V E L G+ ++ I L R+
Sbjct: 19 RRSRFATLLDRAGKFGMRLLDTRLG--KQIVAEEDRMLLEQCGYVDAHTRGIFLSARIAC 76
Query: 124 PIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAW 183
I + +FG + + V L GF P +++ R+ S+
Sbjct: 77 SIALP--AAVALFGSATVRTH----LSAWVALSVIAGFMLPKIYVRRRAAARRQSVVDEM 130
Query: 184 PDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFY 243
P +D+L + G+S+DQ+++ V D G LS E+ + + R+ + +
Sbjct: 131 PLLVDMLRLLQGVGLSLDQSIQVVTNDFKGMLPVLSSELGIAQRQFVAGRTREQSLQRLA 190
Query: 244 NRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMI 303
+ +R + LIQ D++G ++ + L+ R R ++ L K+T MI
Sbjct: 191 TSFDNEDLRAIVRLLIQVDKHGGAVQEPLKQFGDRLREVRRAMLRERIGRLTVKMTGVMI 250
Query: 304 IFFLPVLILVIIGPAILSIIDTM 326
+ LP L +V GP +L++ +
Sbjct: 251 LTLLPALFIVTAGPGMLAVTHAL 273
>gi|167719676|ref|ZP_02402912.1| bacterial type II secretion system protein F domain [Burkholderia
pseudomallei DM98]
Length = 249
Score = 166 bits (422), Expect = 3e-39, Method: Composition-based stats.
Identities = 70/231 (30%), Positives = 122/231 (52%), Gaps = 1/231 (0%)
Query: 97 NIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILI 156
+ +L +AGFR +++++ ++LVV + + ++ +Y LRV +
Sbjct: 19 KLAARLASAGFREHRAVSVMAGLKLVVGACAGLAALALGAHVPRVGDY-VVLRVLMMAGA 77
Query: 157 GYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSV 216
+G P + ++ +RQ +I PDALDLL+IC +G S+ A+RRVA ++
Sbjct: 78 FVIGMMLPEHALGFVLARRQKTIAAYLPDALDLLVICTNAGNSLAVAIRRVASELKTICP 137
Query: 217 PLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLV 276
PL++E + EL + A R + +R L+QS +YGT I SLR+L
Sbjct: 138 PLADEFSVCADELQIGGDAAFALNAMAARIGLPSMRALVTTLVQSQQYGTPITQSLRMLS 197
Query: 277 SETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
R+ +++ E+KAA L PK+T+PM++F +P + L+ GPA++ +I
Sbjct: 198 RTERAMQMIALEEKAAKLAPKMTLPMMLFVMPTVALIAAGPAVIRLIAVFH 248
>gi|307730002|ref|YP_003907226.1| type II secretion system F domain-containing protein [Burkholderia
sp. CCGE1003]
gi|307584537|gb|ADN57935.1| Type II secretion system F domain protein [Burkholderia sp.
CCGE1003]
Length = 353
Score = 166 bits (422), Expect = 3e-39, Method: Composition-based stats.
Identities = 54/237 (22%), Positives = 101/237 (42%), Gaps = 5/237 (2%)
Query: 91 AILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRV 150
V L GF + + L+ R+ ++ + + Y V
Sbjct: 118 RQFVAHEDRRLLEQCGFVDARARGLFLIARVAGAVVLPLAAGTLAHAQVQGPRY-----V 172
Query: 151 GAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAED 210
AVI+ G AP V + R++++ P +DLL + G+S+DQ+L+ + D
Sbjct: 173 LAVIVAFVCGVMAPKVVLRRRAAARRAAVVDELPMLVDLLRLLQGVGLSLDQSLQVMVND 232
Query: 211 IGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGD 270
G LS E+ + + + R+ + + + +R + LIQ DR+G ++ +
Sbjct: 233 FRGVLPVLSGELEIAQRQFAAGRTREQSLARLASSFDNEDLRAVVRLLIQVDRHGGAVQE 292
Query: 271 SLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
L+ R R ++ + K+T MI+ LP L++V GP +LS+ ++K
Sbjct: 293 PLKQFGDRLRETRRAMLRERIGRMAVKMTGVMILTLLPALMIVTAGPGVLSVSHSLK 349
>gi|163801672|ref|ZP_02195570.1| hypothetical Flp pilus assembly protein TadC [Vibrio sp. AND4]
gi|159174589|gb|EDP59391.1| hypothetical Flp pilus assembly protein TadC [Vibrio sp. AND4]
Length = 280
Score = 166 bits (422), Expect = 3e-39, Method: Composition-based stats.
Identities = 54/271 (19%), Positives = 120/271 (44%), Gaps = 17/271 (6%)
Query: 52 REILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEY 111
R R+++I L D R + ++ F K+ + + KL AG+ +
Sbjct: 23 RTEQRRKKIA-LYVDGNVHRAPSSVNRFFVRFGKEHR-------KELEQKLVQAGYYNTE 74
Query: 112 SLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNL 171
+L+V + +FG L + ++ A+++ V P +
Sbjct: 75 WAKFYFPAKLLV--------LALVFGGVFLSDMKQSNQLIAIMVGLIVVILGPDSLLQMR 126
Query: 172 VQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSF 231
+ P LD++ +CV++G++I+ AL + +++ L ++ T ++ +
Sbjct: 127 RKMLIRKTSAQLPYLLDMMSVCVQTGMTIEAALVYLGKELAEFDSDLCYQIKRT-SDSAK 185
Query: 232 LPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKA 291
+ + A + R VR+ +IQ+ ++GTS+ L L + R +++ E+K
Sbjct: 186 IQGLEKALTDLSERIPTPPVRSFVLTIIQNLQHGTSVAQILSDLAEDMRKMQILTVEEKV 245
Query: 292 ASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
L K+++P+IIF + ++++I+ P I+ +
Sbjct: 246 GKLSAKMSLPLIIFIMFPIVILILAPGIMQM 276
>gi|127511576|ref|YP_001092773.1| type II secretion system protein [Shewanella loihica PV-4]
gi|126636871|gb|ABO22514.1| type II secretion system protein [Shewanella loihica PV-4]
Length = 287
Score = 166 bits (421), Expect = 4e-39, Method: Composition-based stats.
Identities = 63/231 (27%), Positives = 111/231 (48%), Gaps = 9/231 (3%)
Query: 96 ENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVIL 155
E + KL+ +G + +R++ + L L +I D + ++L
Sbjct: 66 ERVSKKLQVSGLSYIMTAEQYFAIRILSTLFSLGLTLICSAMLDAYVPQ-------YLLL 118
Query: 156 IGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQS 215
G+ P + +++L +KRQ I ++ P LD L + +E+G+++ AL + E G +
Sbjct: 119 AAVFGYFLPVMTLNDLRKKRQGLIVKSLPVYLDYLTMSIEAGLNMTGALSQAVE--RGPA 176
Query: 216 VPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVL 275
PL E I ++ +R AF N +R Q+ V + AL Q++R G S+G +LR+
Sbjct: 177 GPLRIEFEKVIRDMRAGMSRAQAFRNMADRVQVTEVNSLVSALAQAERTGASLGQTLRIQ 236
Query: 276 VSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
+ R ER AEKKA KL P+I+F PV +++ P + + +
Sbjct: 237 SDQRRIERFQRAEKKALEAPVKLVFPLIVFIFPVTFMILAFPIAMKFMYEL 287
>gi|160897511|ref|YP_001563093.1| type II secretion system protein [Delftia acidovorans SPH-1]
gi|160363095|gb|ABX34708.1| type II secretion system protein [Delftia acidovorans SPH-1]
Length = 334
Score = 166 bits (421), Expect = 4e-39, Method: Composition-based stats.
Identities = 60/333 (18%), Positives = 128/333 (38%), Gaps = 25/333 (7%)
Query: 12 TELAVAITTAVSIFSLIY---AVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSA 68
+ + ++ L+ A+V S ++ + R+ + + A
Sbjct: 3 PQQLWIASISLGALGLVLWACALVWKLWRSARASSQVARILQARDTASTPKAATKSAMQA 62
Query: 69 SS-------RLRTRDSKSLRNFVKKLNLKAILV--------DENIVNKLRAAGFRSEYSL 113
+ + R S S + L A L + L AG +
Sbjct: 63 NDAQLLNPLSINVRSSDSPQAVAANLPPPAWLQWGVAKALLADEDRKLLDQAGVGTRNGS 122
Query: 114 NILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQ 173
+ R+V+ ++ +L + +L + L +G P ++ + +
Sbjct: 123 MAYVASRMVLCVVLPLLAL-------GVLRPGENAALMYGFLGVSLGLMLPKWFLRSRAK 175
Query: 174 KRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLP 233
R+ + P +DLL + G+S+DQ+L+ +A + +S E+ L +
Sbjct: 176 GRREQVVEELPLFVDLLRLLQGVGLSVDQSLQILASEFKSVLRVISGELALANQLYNTGR 235
Query: 234 NRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAAS 293
R+ +F+ N + D + L+Q D++G ++ + LR R +R ++K S
Sbjct: 236 TREQSFQRMVNMSADDDMSAIVNLLVQVDKHGGAVQEPLREFSIRLREKRQASFKEKIGS 295
Query: 294 LGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
+ K+T M++ LP L+++ GP L++I +
Sbjct: 296 ITVKMTGVMVLTLLPALLVITAGPGFLAVIRAL 328
>gi|170725110|ref|YP_001759136.1| type II secretion system protein [Shewanella woodyi ATCC 51908]
gi|169810457|gb|ACA85041.1| type II secretion system protein [Shewanella woodyi ATCC 51908]
Length = 287
Score = 166 bits (421), Expect = 4e-39, Method: Composition-based stats.
Identities = 63/231 (27%), Positives = 112/231 (48%), Gaps = 9/231 (3%)
Query: 96 ENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVIL 155
E I KL+ +G + +R++ + + L I D + + +IL
Sbjct: 66 ERISKKLQISGVSYMMTAEQYFAIRILSTLFAVGLATICGLLLDD-------ISIKYLIL 118
Query: 156 IGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQS 215
G G+ P + +++L +KRQ+ I ++ P LD L + +E+G+++ A+ + E G S
Sbjct: 119 AGLFGYILPVITLNDLRKKRQALIVKSLPVYLDYLTMSIEAGLNMTGAISQAVE--RGPS 176
Query: 216 VPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVL 275
PL E I ++ +R +F N R Q+ + + AL Q+++ G S+G +LRV
Sbjct: 177 GPLRIEFEKVIRDMRAGMSRAQSFRNMAERVQITEINSLVSALAQAEKTGASLGQTLRVQ 236
Query: 276 VSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
+ R ER AEKKA KL P+I+F PV +++ P + + +
Sbjct: 237 SDQRRIERFQRAEKKALEAPVKLVFPLIVFIFPVTFMILAFPIAMKFMYEL 287
>gi|209546474|ref|YP_002278392.1| type II secretion system protein [Rhizobium leguminosarum bv.
trifolii WSM2304]
gi|209537718|gb|ACI57652.1| type II secretion system protein [Rhizobium leguminosarum bv.
trifolii WSM2304]
Length = 314
Score = 166 bits (421), Expect = 4e-39, Method: Composition-based stats.
Identities = 64/288 (22%), Positives = 136/288 (47%), Gaps = 5/288 (1%)
Query: 27 LIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQ-KDSASSRLRTRDSKSLRNFVK 85
+ +AV+I + + EL R + V+V D+ + L +++ +R + +
Sbjct: 11 VFFAVLIFTAAASELFFRQREVSVRVSKSSATAREEFHLGDTTIADLGEAENRLIRRYFE 70
Query: 86 KLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYP 145
+ + V+ N+L AG+ + ++ VR V I +++ ++W + + +
Sbjct: 71 -ITRRDTNVNS-TQNRLIRAGYFAAGAVTTFQAVRAAVCI-GVMVSMVWTLNW-VVPDMS 126
Query: 146 FQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALR 205
+ A + F +++I ++ +R +PD +D+L++C+++G+SI+ A
Sbjct: 127 GVATLIAAMFAAGSTFILVNIYIDRRGAAKEREYRRLFPDFMDMLIVCLDAGMSIEAAAN 186
Query: 206 RVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYG 265
RVA + + + + + E+ + A N R ++D R + QS+ G
Sbjct: 187 RVAREFVDKRQDFGLHLSIMMLEVRGGRRLREALANLAIRLRIDEARALSVLFRQSEELG 246
Query: 266 TSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILV 313
TS+ +LRV E R R++ AE+KA +L K+ +P+ F PV +++
Sbjct: 247 TSVTQTLRVYCKEMRDIRIVRAEEKANALPVKMLLPLGAFLFPVSLII 294
>gi|257139285|ref|ZP_05587547.1| hypothetical protein BthaA_08776 [Burkholderia thailandensis E264]
Length = 253
Score = 166 bits (420), Expect = 5e-39, Method: Composition-based stats.
Identities = 53/239 (22%), Positives = 99/239 (41%), Gaps = 6/239 (2%)
Query: 88 NLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQ 147
L +V E L G+ ++ I L R+ I + +FG + +
Sbjct: 16 RLGKQIVAEEDRMLLEQCGYVDAHTRGIFLSARIACSIALP--AAVALFGSATVRTH--- 70
Query: 148 LRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRV 207
V L GF P +++ R+ S+ P +D+L + G+S+DQ+++ V
Sbjct: 71 -LSAWVALSVIAGFMLPKIYVRRRAAARRQSVVDEMPLLVDMLRLLQGVGLSLDQSIQVV 129
Query: 208 AEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTS 267
D G LS E+ + + R+ + + + +R + LIQ D++G +
Sbjct: 130 TNDFKGMLPVLSSELGIAQRQFVAGRTREQSLQRLATSFDNEDLRAIVRLLIQVDKHGGA 189
Query: 268 IGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
+ + L+ R R ++ L K+T MI+ LP L +V GP +L++ +
Sbjct: 190 VQEPLKQFGDRLREVRRAMLRERIGRLTVKMTGVMILTLLPALFIVTAGPGMLAVTHAL 248
>gi|325518470|gb|EGC98169.1| pilus assembly protein [Burkholderia sp. TJI49]
Length = 211
Score = 166 bits (420), Expect = 5e-39, Method: Composition-based stats.
Identities = 46/215 (21%), Positives = 97/215 (45%), Gaps = 5/215 (2%)
Query: 115 ILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQK 174
+ L R+ I+ +L I+ G K + + + + +GF P +++
Sbjct: 1 MFLSARIACGIVLPLLFAIFASGRMKGGYW-----LIGMFVAFGLGFMLPKLYVQRRASS 55
Query: 175 RQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPN 234
R+ S++ P +D+L + G+S+DQ+L+ V D G LS E+ + +
Sbjct: 56 RRQSVEDELPLFVDMLRLLQGVGLSLDQSLQVVTNDFRGMMPVLSSEVGIAQRQFVAGRT 115
Query: 235 RQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASL 294
R+ + + + + +R + ++Q D++G ++ + L+ R R ++ L
Sbjct: 116 REQSMQRLSGGFENEDLRAIVRLMVQVDKHGGAVQEPLKQFGDRLRETRRSMLRERIGRL 175
Query: 295 GPKLTVPMIIFFLPVLILVIIGPAILSIIDTMKDH 329
K+T M++ LP L++V GP L++ + H
Sbjct: 176 TVKMTGVMVLTLLPALLIVTAGPGFLAVTRALATH 210
>gi|251789651|ref|YP_003004372.1| type II secretion system protein [Dickeya zeae Ech1591]
gi|247538272|gb|ACT06893.1| type II secretion system protein [Dickeya zeae Ech1591]
Length = 318
Score = 166 bits (420), Expect = 5e-39, Method: Composition-based stats.
Identities = 65/233 (27%), Positives = 124/233 (53%), Gaps = 3/233 (1%)
Query: 96 ENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVIL 155
+ + L AG R +L L+ L+L ++ + G + + + A ++
Sbjct: 89 QQLRRLLDLAGIRRTEALGWLMAG---KLGGGLLLALLLVGGALPPPDRTGLIGLAAALI 145
Query: 156 IGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQS 215
+ G P W+ R + RA PDALDL+++C E+G+SI + L+ V++++G S
Sbjct: 146 GFFAGSLLPEAWLKMRAAGRGEKLARAVPDALDLMVVCAEAGLSIGRVLQVVSKELGLSS 205
Query: 216 VPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVL 275
+++E+ T AEL L +R A ++ RT++ + + L+Q++RYGT + +LR +
Sbjct: 206 PEMADELRYTAAELQILADRNTALQHLAERTRVSEIESMVATLLQAERYGTPLSQALRTI 265
Query: 276 VSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMKD 328
E+R L+ E+KA L +L+VP++ LP +I ++ PA+L ++ + +
Sbjct: 266 ADESRKTLLLTLEEKAGKLPAQLSVPLMALILPPIIAIMASPALLRVVRLLGN 318
>gi|323525750|ref|YP_004227903.1| Type II secretion system F domain-containing protein [Burkholderia
sp. CCGE1001]
gi|323382752|gb|ADX54843.1| Type II secretion system F domain protein [Burkholderia sp.
CCGE1001]
Length = 367
Score = 166 bits (420), Expect = 5e-39, Method: Composition-based stats.
Identities = 55/237 (23%), Positives = 104/237 (43%), Gaps = 5/237 (2%)
Query: 91 AILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRV 150
+V E L GF + + L+ R+ I+ ++ + + Y V
Sbjct: 132 RQVVAEEDRRLLEQCGFVDARARGLFLIARVAGAIVLPLVAGALGHAHVEGPRY-----V 186
Query: 151 GAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAED 210
VI+ G AP V + R+ ++ P +DLL + G+S+DQ+L+ + D
Sbjct: 187 LVVIVAFVCGVMAPKVVLRRRAAARRGAVVDELPMLVDLLRLLQGVGLSLDQSLQVMVND 246
Query: 211 IGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGD 270
G LS E+ + + + R+ + + + + +R + LIQ DR+G ++ +
Sbjct: 247 FRGVLPVLSSELDIAQRQFAAGRTREQSLSRLASSFENEDLRAVVRLLIQVDRHGGAVQE 306
Query: 271 SLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
L+ R R ++ + K+T MI+ LP L++V GP +LS+ ++K
Sbjct: 307 PLKQFGDRLRETRRAMLRERIGRMAVKMTGVMILTLLPALMIVTAGPGVLSVSHSLK 363
>gi|167561752|ref|ZP_02354668.1| hypothetical protein BoklE_04253 [Burkholderia oklahomensis EO147]
Length = 234
Score = 166 bits (420), Expect = 6e-39, Method: Composition-based stats.
Identities = 51/230 (22%), Positives = 92/230 (40%), Gaps = 6/230 (2%)
Query: 97 NIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILI 156
L G+ ++ I L R+ I I E V L
Sbjct: 6 EDRMLLEQCGYVDAHTRGIFLSARIACGIALPAAVAI------VGDETVATHLSAWVALS 59
Query: 157 GYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSV 216
VGF P +++ R+ S+ P +D+L + G+S+DQ+++ V D G
Sbjct: 60 VIVGFMLPKIYVRRRAAARRQSVVDEMPLLVDMLRLLQGVGLSLDQSIQVVTNDFKGMLP 119
Query: 217 PLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLV 276
LS E+ + + R+ + + + +R + LIQ D++G ++ + L+
Sbjct: 120 VLSSELGIAQRQFVAGRTREQSLQRLATSFDNEDLRAIVRLLIQVDKHGGAVQEPLKQFG 179
Query: 277 SETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
R R ++ L K+T MI+ LP L +V GP +L++ +
Sbjct: 180 DRLREVRRAMLRERIGRLTVKMTGVMIVTLLPALFIVTAGPGMLAVAHAL 229
>gi|296158799|ref|ZP_06841628.1| Type II secretion system F domain protein [Burkholderia sp. Ch1-1]
gi|295891004|gb|EFG70793.1| Type II secretion system F domain protein [Burkholderia sp. Ch1-1]
Length = 336
Score = 165 bits (419), Expect = 6e-39, Method: Composition-based stats.
Identities = 60/274 (21%), Positives = 112/274 (40%), Gaps = 15/274 (5%)
Query: 64 QKDSASSRLRTRDSKSLRNFVKKLN----------LKAILVDENIVNKLRAAGFRSEYSL 113
+ A + R+ L+ +++ +V E L GF +
Sbjct: 64 SQSGARAAARSVQPTGLKGLLERFAHTGIRWLDTPFGRQIVAEEDRRLLEQCGFVDTRTR 123
Query: 114 NILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQ 173
+ LV RLV ++ +L G + Y V VI+ GF P +
Sbjct: 124 GLFLVARLVGALVLPVLAGTLTRGQLEGPRY-----VALVIIAAMAGFMLPKFALRRRAG 178
Query: 174 KRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLP 233
KR++ + P +DLL + G+S+DQ+L+ V D G L+ E+ + + +
Sbjct: 179 KRRNGVVDELPLLVDLLRLLQGVGLSLDQSLQVVVNDFRGMLPVLAGELEIAQRQFAAGR 238
Query: 234 NRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAAS 293
R+ + + +R + L+Q DR+G ++ + L+ R R ++
Sbjct: 239 TREQSLNRLATSYDNEDLRAVMRLLVQVDRHGGAVQEPLKQFGDRLRETRRAMLRERIGR 298
Query: 294 LGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
L K+T MI+ LP L++V GP +L++ ++
Sbjct: 299 LAVKMTGVMIVTLLPALMIVTAGPGVLAVQHSLG 332
>gi|327189775|gb|EGE56919.1| putative tadC pilus assembly protein [Rhizobium etli CNPAF512]
Length = 314
Score = 165 bits (419), Expect = 7e-39, Method: Composition-based stats.
Identities = 67/288 (23%), Positives = 131/288 (45%), Gaps = 5/288 (1%)
Query: 27 LIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQ-KDSASSRLRTRDSKSLRNFVK 85
+ +AV+I S + EL R + V+V D+ + L +++ +R + +
Sbjct: 11 VFFAVLIFSAAASELFFRQREVSVRVSKSSAAAGDEFHLGDTTIADLGEAENRLIRRYFE 70
Query: 86 KLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYP 145
+ + N+L AG+ + ++ VVR VV I L+ + +
Sbjct: 71 I--TRRDTNANSTQNRLIRAGYFAAGAVTTFQVVRAVVCISVLVGAVWAANRIAPNMSQM 128
Query: 146 FQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALR 205
L +G + F +++I ++ +R +PD +D+L++C+++G+SI+ A
Sbjct: 129 ATLILG--MFAAGATFILVNIYIDRRGAAKEREYRRLFPDFMDMLIVCLDAGMSIEAAAN 186
Query: 206 RVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYG 265
RVA + + + + + E+ + A N R ++D R + QS+ G
Sbjct: 187 RVAREFVDKQQDFGLHLSIMMLEVRGGRRLREALANLATRLRIDEARALSVLFRQSEELG 246
Query: 266 TSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILV 313
TS+ +LRV E R R++ AE+KA +L K+ +P+ F PV + +
Sbjct: 247 TSVTQTLRVYSKEMRDIRVVRAEEKANALPVKMLLPLGAFLFPVSLFI 294
>gi|264680614|ref|YP_003280524.1| type II secretion system protein [Comamonas testosteroni CNB-2]
gi|262211130|gb|ACY35228.1| type II secretion system protein [Comamonas testosteroni CNB-2]
Length = 317
Score = 165 bits (418), Expect = 9e-39, Method: Composition-based stats.
Identities = 74/315 (23%), Positives = 137/315 (43%), Gaps = 17/315 (5%)
Query: 19 TTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQ----QITSLQKDSASSRLRT 74
+++ +LI A VI ++R +S V R+ L + + + LR+
Sbjct: 12 IALLAVAALIGAAVIAYTH----QRRERSSQVVRDALSRSGAAAANEAATPARPADLLRS 67
Query: 75 -RDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGII 133
L +L LV + L G+ S + L+ R ++ ++F +L
Sbjct: 68 LNGDGELPAHWLNTSLGKALVAQEDRILLSKCGWGSTRAQLQYLIARCLISVLFSLLAAF 127
Query: 134 WIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLIC 193
G + L Y + +GF P + ++ ++R++ + R P +DLL +
Sbjct: 128 VFLGSKQFLLY--------LFAAFTIGFLLPKWVLRSVARRRRACVARELPLFVDLLGLL 179
Query: 194 VESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRN 253
+G+S+DQ L+ + D G LS E+ L + S R+ +F Q D + N
Sbjct: 180 QGTGMSLDQTLQVIGSDFGNVMPVLSREIQLANQQYSRGSTRERSFGRMSEVYQNDNLAN 239
Query: 254 ATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILV 313
T +IQ DRYG ++ + LR+ R +R + ++ + K+T M++ LP LI++
Sbjct: 240 LTSLMIQIDRYGGAVQEPLRIFGERLREQRKAKMKELIGKISVKMTAVMVVTLLPALIII 299
Query: 314 IIGPAILSIIDTMKD 328
GP L++I +
Sbjct: 300 TAGPGFLAVIRALGG 314
>gi|187923649|ref|YP_001895291.1| type II secretion system protein [Burkholderia phytofirmans PsJN]
gi|187714843|gb|ACD16067.1| type II secretion system protein [Burkholderia phytofirmans PsJN]
Length = 336
Score = 165 bits (418), Expect = 9e-39, Method: Composition-based stats.
Identities = 53/237 (22%), Positives = 100/237 (42%), Gaps = 5/237 (2%)
Query: 91 AILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRV 150
+V E L GF + + L+ RLV ++ +L G
Sbjct: 101 RQVVAEEDRRLLEQCGFVDTRTRGLFLLARLVGALVLPVLA-----GTLASTHLDGSRYG 155
Query: 151 GAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAED 210
VI+ GF P + + KR+ ++ P +DLL + G+S+DQ+L+ V D
Sbjct: 156 ALVIVAVMAGFMLPKLVLRRRAGKRRHAVVDELPLLVDLLRLLQGVGLSLDQSLQVVVND 215
Query: 211 IGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGD 270
G L+ E+ + + + R+ + + + +R + L+Q D +G ++ +
Sbjct: 216 FRGMLPVLAGELEIAQRQFAAGRTREQSLNRLASSYDNEDLRAVVRLLVQVDLHGGAVQE 275
Query: 271 SLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
L+ R R ++ L K+T MI+ LP L++V GP +L++ ++
Sbjct: 276 PLKQFGDRLREARRAMLRERIGRLAVKMTGVMIVTLLPALMIVTAGPGVLAVQHSLG 332
>gi|91783015|ref|YP_558221.1| putative tight adherence TadC related transmembrane protein
[Burkholderia xenovorans LB400]
gi|91686969|gb|ABE30169.1| Putative tight adherence TadC related transmembrane protein
[Burkholderia xenovorans LB400]
Length = 337
Score = 165 bits (418), Expect = 9e-39, Method: Composition-based stats.
Identities = 58/270 (21%), Positives = 115/270 (42%), Gaps = 6/270 (2%)
Query: 58 QQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILL 117
++ T + L R + + ++ + I+ +E+ L GF + + L
Sbjct: 70 KRATRHAPPTGLKGLLERFAHTGIRWLDTPFGRQIVAEED-RRLLEQCGFVDTRTRGLFL 128
Query: 118 VVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQS 177
V RL ++ +L + G ++ V VI+ GF P + KR++
Sbjct: 129 VARLAGAMVLPVLAGMLTRG-----QFEGSRYVALVIIAAMAGFMLPKFVLRRRAGKRRN 183
Query: 178 SIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQV 237
+ P +DLL + G+S+DQ+L+ V D G L+ E+ + + + R+
Sbjct: 184 GVVDELPLLVDLLRLLQGVGLSLDQSLQVVVNDFRGMLPVLAGELEIAQRQFTAGRTREQ 243
Query: 238 AFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPK 297
+ + +R + L+Q DR+G ++ + L+ R R ++ L K
Sbjct: 244 SLNRLATSYDNEDLRAVMRLLVQVDRHGGAVQEPLKQFGDRLRETRRAMLRERIGRLAVK 303
Query: 298 LTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
+T MI+ LP L++V GP +L++ ++
Sbjct: 304 MTGVMIVTLLPALMIVTAGPGVLAVQHSLG 333
>gi|167911130|ref|ZP_02498221.1| type II secretion system protein [Burkholderia pseudomallei 112]
Length = 267
Score = 165 bits (417), Expect = 1e-38, Method: Composition-based stats.
Identities = 51/240 (21%), Positives = 100/240 (41%), Gaps = 8/240 (3%)
Query: 88 NLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQ 147
L +V + L G+ ++ I L R+ I + + P +
Sbjct: 30 RLGKQIVADEDRMLLEQCGYVDAHTRGIFLSARIACAIALPAAVAL-------VGGEPVR 82
Query: 148 LRVGAVILIGYV-GFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRR 206
+GA + + + GF P ++ R+ S+ P +D+L + G+S+DQ+++
Sbjct: 83 THLGAWVALSVIAGFMLPKTYVRRRAAARRQSVVDEMPLLVDMLRLLQGVGLSLDQSIQV 142
Query: 207 VAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGT 266
V D G LS E+ + + R+ + + + +R + LIQ D++G
Sbjct: 143 VTNDFRGMLPVLSSELGIAQRQFVAGRTREQSLQRLATSFDNEDLRAIVRLLIQVDKHGG 202
Query: 267 SIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
++ + L+ R R ++ L K+T MI+ LP L +V GP +L++ +
Sbjct: 203 AVQEPLKQFGDRLREVRRAMLRERIGRLTVKMTGVMILTLLPALFIVTAGPGMLAVTHAL 262
>gi|167738780|ref|ZP_02411554.1| type II secretion system protein [Burkholderia pseudomallei 14]
Length = 271
Score = 165 bits (417), Expect = 1e-38, Method: Composition-based stats.
Identities = 51/240 (21%), Positives = 100/240 (41%), Gaps = 8/240 (3%)
Query: 88 NLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQ 147
L +V + L G+ ++ I L R+ I + + P +
Sbjct: 34 RLGKQIVADEDRMLLEQCGYVDAHTRGIFLSARIACAIALPAAVAL-------VGGEPVR 86
Query: 148 LRVGAVILIGYV-GFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRR 206
+GA + + + GF P ++ R+ S+ P +D+L + G+S+DQ+++
Sbjct: 87 THLGAWVALSVIAGFMLPKTYVRRRAAARRQSVVDEMPLLVDMLRLLQGVGLSLDQSIQV 146
Query: 207 VAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGT 266
V D G LS E+ + + R+ + + + +R + LIQ D++G
Sbjct: 147 VTNDFRGMLPVLSSELGIAQRQFVAGRTREQSLQRLATSFDNEDLRAIVRLLIQVDKHGG 206
Query: 267 SIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
++ + L+ R R ++ L K+T MI+ LP L +V GP +L++ +
Sbjct: 207 AVQEPLKQFGDRLREVRRAMLRERIGRLTVKMTGVMILTLLPALFIVTAGPGMLAVTHAL 266
>gi|167894486|ref|ZP_02481888.1| type II secretion system protein [Burkholderia pseudomallei 7894]
Length = 269
Score = 164 bits (416), Expect = 1e-38, Method: Composition-based stats.
Identities = 51/239 (21%), Positives = 95/239 (39%), Gaps = 6/239 (2%)
Query: 88 NLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQ 147
L +V + L G+ ++ I L R+ I + E
Sbjct: 32 RLGKQIVADEDRMLLEQCGYVDAHTRGIFLSARIACAIALPAAVAL------VGGETVRT 85
Query: 148 LRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRV 207
V L GF P +++ R+ S+ P +D+L + G+S+DQ+++ V
Sbjct: 86 HLGAWVALSVIAGFMLPKIYVRRRAAARRQSVVDEMPLLVDMLRLLQGVGLSLDQSIQVV 145
Query: 208 AEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTS 267
D G LS E+ + + R+ + + + +R + LIQ D++G +
Sbjct: 146 TNDFRGMLPVLSSELGIAQRQFVAGRTREQSLQRLATSFDNEDLRAIVRLLIQVDKHGGA 205
Query: 268 IGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
+ + L+ R R ++ L K+T MI+ LP L +V GP +L++ +
Sbjct: 206 VQEPLKQFGDRLREVRRAMLRERIGRLTVKMTGVMILTLLPALFIVTAGPGMLAVTHAL 264
>gi|167845911|ref|ZP_02471419.1| type II secretion system protein [Burkholderia pseudomallei B7210]
Length = 270
Score = 164 bits (416), Expect = 2e-38, Method: Composition-based stats.
Identities = 51/240 (21%), Positives = 100/240 (41%), Gaps = 8/240 (3%)
Query: 88 NLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQ 147
L +V + L G+ ++ I L R+ I + + P +
Sbjct: 33 RLGKQIVADEDRMLLEQCGYVDAHTRGIFLSARIACAIALPAAVAL-------VGGEPVR 85
Query: 148 LRVGAVILIGYV-GFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRR 206
+GA + + + GF P ++ R+ S+ P +D+L + G+S+DQ+++
Sbjct: 86 THLGAWVALSVIAGFMLPKTYVRRRAAARRQSVVDEMPLLVDMLRLLQGVGLSLDQSIQV 145
Query: 207 VAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGT 266
V D G LS E+ + + R+ + + + +R + LIQ D++G
Sbjct: 146 VTNDFRGMLPVLSSELGIAQRQFVAGRTREQSLQRLATSFDNEDLRAIVRLLIQVDKHGG 205
Query: 267 SIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
++ + L+ R R ++ L K+T MI+ LP L +V GP +L++ +
Sbjct: 206 AVQEPLKQFGDRLREVRRAMLRERIGRLTVKMTGVMILTLLPALFIVTAGPGMLAVTHAL 265
>gi|238563945|ref|ZP_00437984.2| type II secretion system protein [Burkholderia mallei GB8 horse 4]
gi|238519622|gb|EEP83092.1| type II secretion system protein [Burkholderia mallei GB8 horse 4]
Length = 268
Score = 164 bits (415), Expect = 2e-38, Method: Composition-based stats.
Identities = 51/240 (21%), Positives = 100/240 (41%), Gaps = 8/240 (3%)
Query: 88 NLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQ 147
L +V + L G+ ++ I L R+ I + + P +
Sbjct: 31 RLGKQIVADEDRMLLEQCGYVDAHTRGIFLSARIACAIALPAAVAL-------VGGEPVR 83
Query: 148 LRVGAVILIGYV-GFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRR 206
+GA + + + GF P ++ R+ S+ P +D+L + G+S+DQ+++
Sbjct: 84 THLGAWVALSVIAGFMLPKTYVRRRAAARRQSVVDEMPLLVDMLRLLQGVGLSLDQSIQV 143
Query: 207 VAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGT 266
V D G LS E+ + + R+ + + + +R + LIQ D++G
Sbjct: 144 VTNDFRGMLPVLSSELGIAQRQFVAGRTREQSLQRLATSFDNEDLRAIVRLLIQVDKHGG 203
Query: 267 SIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
++ + L+ R R ++ L K+T MI+ LP L +V GP +L++ +
Sbjct: 204 AVQEPLKQFGDRLREVRRAMLRERIGRLTVKMTGVMILTLLPALFIVTAGPGMLAVTHAL 263
>gi|89100216|ref|ZP_01173083.1| hypothetical protein B14911_20190 [Bacillus sp. NRRL B-14911]
gi|89085066|gb|EAR64200.1| hypothetical protein B14911_20190 [Bacillus sp. NRRL B-14911]
Length = 312
Score = 164 bits (415), Expect = 2e-38, Method: Composition-based stats.
Identities = 64/307 (20%), Positives = 133/307 (43%), Gaps = 12/307 (3%)
Query: 19 TTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSK 78
+++ +V+ + + KR + + + + + + K + S
Sbjct: 4 IILITVILCWLTLVLGLINLYQFAKRKEVLKLHIDEIAASSAFDVSKKKSGSEKVITFLA 63
Query: 79 SLRNFVKKLNLKAILVDE--NIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIF 136
+ + + L+ E I LR AG E ++ ++V II I G+ +
Sbjct: 64 RYADDFSTIGERVNLLSESAEIQTLLRKAGNPFEMTVGRFQGFKIVCVIIGFIAGLFAVL 123
Query: 137 GYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVES 196
L A + + GF P + + + +KRQ ++ PD LD + + +++
Sbjct: 124 -------LGLPLSNIAFVTLPIFGFFVPILLVRSKAKKRQQQLRSDLPDFLDTVSVSLQA 176
Query: 197 GISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQ 256
G ++D AL+ V + G P+ EE + + E+ R+ A+ R + ++ +
Sbjct: 177 GSNMDSALKEVIKYFSG---PIKEEFSIFLQEIDLGVPREKAYGGLLERNDNEEFQSFIK 233
Query: 257 ALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIG 316
+LIQ+ R G + +L+ + R L + ++KAA PK+T+ P+++L+IIG
Sbjct: 234 SLIQATRLGVPMASTLKSQAEDIRKISLEQVKEKAAKASPKVTMITSFIIAPLIMLLIIG 293
Query: 317 PAILSII 323
+L++I
Sbjct: 294 LVLLNMI 300
>gi|83718806|ref|YP_443055.1| hypothetical protein BTH_I2538 [Burkholderia thailandensis E264]
gi|83652631|gb|ABC36694.1| membrane protein, putative [Burkholderia thailandensis E264]
Length = 373
Score = 164 bits (415), Expect = 2e-38, Method: Composition-based stats.
Identities = 64/325 (19%), Positives = 126/325 (38%), Gaps = 18/325 (5%)
Query: 14 LAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRL- 72
+ V + A++I + A + L++R ++ + SAS+
Sbjct: 50 IGVLMLAALAIMQAVLARRTGRTLADALDQRAAALEAAAARATTGAAAASSAASASAPDA 109
Query: 73 ----RTRDSKSLRNFVKKLNLK-------AILVDENIVNKLRAAGFRSEYSLNILLVVRL 121
R +L + K ++ +V E L G+ ++ I L R+
Sbjct: 110 APHARRSRFATLLDRAGKFGMRLLDTRLGKQIVAEEDRMLLEQCGYVDAHTRGIFLSARI 169
Query: 122 VVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKR 181
I + +FG + + V L GF P +++ R+ S+
Sbjct: 170 ACSIALP--AAVALFGSATVRTH----LSAWVALSVIAGFMLPKIYVRRRAAARRQSVVD 223
Query: 182 AWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFEN 241
P +D+L + G+S+DQ+++ V D G LS E+ + + R+ + +
Sbjct: 224 EMPLLVDMLRLLQGVGLSLDQSIQVVTNDFKGMLPVLSSELGIAQRQFVAGRTREQSLQR 283
Query: 242 FYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVP 301
+ +R + LIQ D++G ++ + L+ R R ++ L K+T
Sbjct: 284 LATSFDNEDLRAIVRLLIQVDKHGGAVQEPLKQFGDRLREVRRAMLRERIGRLTVKMTGV 343
Query: 302 MIIFFLPVLILVIIGPAILSIIDTM 326
MI+ LP L +V GP +L++ +
Sbjct: 344 MILTLLPALFIVTAGPGMLAVTHAL 368
>gi|167919153|ref|ZP_02506244.1| type II secretion system protein [Burkholderia pseudomallei BCC215]
Length = 274
Score = 164 bits (415), Expect = 2e-38, Method: Composition-based stats.
Identities = 51/239 (21%), Positives = 95/239 (39%), Gaps = 6/239 (2%)
Query: 88 NLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQ 147
L +V + L G+ ++ I L R+ I + E
Sbjct: 37 RLGKQIVADEDRMLLEQCGYVDAHTRGIFLSARIACAIALPAAVAL------VGGETVRT 90
Query: 148 LRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRV 207
V L GF P +++ R+ S+ P +D+L + G+S+DQ+++ V
Sbjct: 91 HLGAWVALSVIAGFMLPKIYVRRRAAARRQSVVDEMPLLVDMLRLLQGVGLSLDQSIQVV 150
Query: 208 AEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTS 267
D G LS E+ + + R+ + + + +R + LIQ D++G +
Sbjct: 151 TNDFRGMLPVLSSELGIAQRQFVAGRTREQSLQRLATSFDNEDLRAIVRLLIQVDKHGGA 210
Query: 268 IGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
+ + L+ R R ++ L K+T MI+ LP L +V GP +L++ +
Sbjct: 211 VQEPLKQFGDRLREVRRAMLRERIGRLTVKMTGVMILTLLPALFIVTAGPGMLAVTHAL 269
>gi|319940445|ref|ZP_08014790.1| hypothetical protein HMPREF9464_00009 [Sutterella wadsworthensis
3_1_45B]
gi|319806071|gb|EFW02820.1| hypothetical protein HMPREF9464_00009 [Sutterella wadsworthensis
3_1_45B]
Length = 303
Score = 163 bits (414), Expect = 2e-38, Method: Composition-based stats.
Identities = 61/246 (24%), Positives = 126/246 (51%), Gaps = 10/246 (4%)
Query: 84 VKKLNLKAILVD---ENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDK 140
V + LK D E L AGF SL + L++ + I ++ ++
Sbjct: 63 VARFGLKLAGNDKSRETTALLLAQAGFARPGSLGVFLLL--KTLLGLGIAAALFFGTQER 120
Query: 141 LLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISI 200
+ + G + G P + ++ +R ++++R+ PDALDL++IC E+G+
Sbjct: 121 SIGTIALMGAGY-----FAGGILPEWVLKSMAARRYTALERSMPDALDLMVICAEAGLPF 175
Query: 201 DQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQ 260
+ ++ V+ ++ + L+ E+ LT AEL +P R A N RT++ + LIQ
Sbjct: 176 TRIVKVVSRELELSAPVLAHELTLTNAELEIMPERSAALRNLAERTRVPSIEGMVSTLIQ 235
Query: 261 SDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAIL 320
++++GT + +L + +E+RS ++ E++A L +L++P++ LP ++ ++ PA++
Sbjct: 236 AEQFGTPLAQALHNIAAESRSTLILTLEERAGKLPARLSLPLMTLILPPVVAIVAAPALM 295
Query: 321 SIIDTM 326
+I ++
Sbjct: 296 RVIRSL 301
>gi|13475422|ref|NP_106986.1| hypothetical protein mlr6486 [Mesorhizobium loti MAFF303099]
gi|14026174|dbj|BAB52772.1| mlr6486 [Mesorhizobium loti MAFF303099]
Length = 305
Score = 163 bits (414), Expect = 2e-38, Method: Composition-based stats.
Identities = 52/218 (23%), Positives = 98/218 (44%), Gaps = 1/218 (0%)
Query: 90 KAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLR 149
K + KL AGF + I + RL I L + + P +
Sbjct: 69 KERGEPNALEAKLFRAGFYQTSAPVIYTLSRLGAVCIGF-LACYAVLSRVLPPQLPGFVA 127
Query: 150 VGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAE 209
LIG PS+ + +++ +R +PD +D+++ C ++G+S++ A+ RV
Sbjct: 128 FAGSALIGLGCLVIPSIALDRFESRQKQVYRRGFPDFMDMMITCADAGMSLEAAVERVGA 187
Query: 210 DIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIG 269
++ G L ++ + +L + A +R +D R QS+ GTS+
Sbjct: 188 ELAGTHKWLGIQLSIVTLQLRAGKPLREALRELADRIGLDEARALAVLFRQSEELGTSLT 247
Query: 270 DSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFL 307
D+LR+ E R++R+M AE++A +L K+ +P+ +
Sbjct: 248 DALRIYSDEMRTQRIMNAEERANALPVKMMIPLGLCIF 285
>gi|261251276|ref|ZP_05943850.1| type II/IV secretion system protein TadC associated with Flp pilus
assembly [Vibrio orientalis CIP 102891]
gi|260938149|gb|EEX94137.1| type II/IV secretion system protein TadC associated with Flp pilus
assembly [Vibrio orientalis CIP 102891]
Length = 288
Score = 163 bits (414), Expect = 3e-38, Method: Composition-based stats.
Identities = 60/250 (24%), Positives = 123/250 (49%), Gaps = 5/250 (2%)
Query: 74 TRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGII 133
TR+ + + VK + E KL AAGF S+Y ++ +++++ L L +I
Sbjct: 43 TREERKRIDLVKTALSQFSFNKEETRKKLVAAGFYSDYLADVYYLMKII--PFTLCLALI 100
Query: 134 WIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLIC 193
+ E F L L ++ P +I++ I P LDL+ +C
Sbjct: 101 GFDYFKGETEVAFSLLYLLGALGLFI--IGPDAFIASRGNANTKHISSRLPFLLDLMNVC 158
Query: 194 VESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRN 253
V +G++I+ +L +++++ L+ + +T+ + S L + A E FY+ ++
Sbjct: 159 VHTGMTIESSLDYLSKELVTVDRNLAYVVRVTV-DRSRLVGLEKALEEFYDLVPTSESQS 217
Query: 254 ATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILV 313
++QS ++G+SIG L L ++ R +M+ E++ +G K+++P+I F + ++++
Sbjct: 218 FVMTMVQSLQFGSSIGPVLATLATDIRELNMMDLEERIGKMGAKMSIPLIAFIMVPIVVL 277
Query: 314 IIGPAILSII 323
I P IL ++
Sbjct: 278 IAAPGILRML 287
>gi|238027558|ref|YP_002911789.1| type II secretion system protein [Burkholderia glumae BGR1]
gi|237876752|gb|ACR29085.1| Type II secretion system protein [Burkholderia glumae BGR1]
Length = 330
Score = 163 bits (414), Expect = 3e-38, Method: Composition-based stats.
Identities = 53/241 (21%), Positives = 102/241 (42%), Gaps = 6/241 (2%)
Query: 88 NLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQ 147
L LV + L G+ S + LVVRL I + + ++
Sbjct: 93 GLGKQLVADEDRKLLEQCGYVEARSRGLFLVVRLACAIGLPLAILPFLTHGGP------G 146
Query: 148 LRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRV 207
+ + L GF P V++ R+ S+ P +D+L + G+S+DQ+++ +
Sbjct: 147 KWLFGLFLALAAGFMLPKVYVRRRAAARRESVADEMPLFVDMLRLLQGVGLSLDQSMQVI 206
Query: 208 AEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTS 267
D LS E+ + + + R+ + + +R + LIQ D++G +
Sbjct: 207 THDFTSMLPVLSWELGVAQRQFAAGRTREQSLARLTTSFDNEDLRAIVRLLIQVDKHGGA 266
Query: 268 IGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
+ + LR+ R R ++ L K+T MI+ LP L++V GP I++++ +
Sbjct: 267 VQEPLRLFGDRLREGRRATLRERIGRLTVKMTGVMIVTLLPALLIVTAGPGIMTVVVALA 326
Query: 328 D 328
+
Sbjct: 327 N 327
>gi|54309665|ref|YP_130685.1| Flp pilus assembly protein TadC [Photobacterium profundum SS9]
gi|46914103|emb|CAG20883.1| hypothetical Flp pilus assembly protein TadC [Photobacterium
profundum SS9]
Length = 283
Score = 163 bits (414), Expect = 3e-38, Method: Composition-based stats.
Identities = 55/270 (20%), Positives = 119/270 (44%), Gaps = 9/270 (3%)
Query: 54 ILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSL 113
L + ++ S L + L + + +++ + AGF +
Sbjct: 18 KLSQWHTEQAKQAHVESYLSAKKDGRLTRLNRFITHLGKNHQQDLEQQFVDAGFYNTQFT 77
Query: 114 NILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQ 173
+ +L + I ++ ++ L + Q +GAV +I + P + +S +
Sbjct: 78 KYYVPAKLTLVIFTCVVVLM------SDLSFTNQAAIGAVAMIAIL--LVPEMVLSMRKK 129
Query: 174 KRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLP 233
R P LD++ +CV++G++I+ AL ++ ++ L + T A+ + +
Sbjct: 130 ALILKTSRQLPYMLDMMSVCVQTGMTIEAALTYLSTELEAFDRDLCFHIKKT-ADSARVK 188
Query: 234 NRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAAS 293
+ A R VR+ T LIQ+ +YGTSI + L L + R +++ E+K
Sbjct: 189 GLEKALIELSERIPTPDVRSFTLTLIQNLQYGTSIANVLSALAEDMRKMQVLTMEEKIGK 248
Query: 294 LGPKLTVPMIIFFLPVLILVIIGPAILSII 323
L K++VP+I+ + ++++I+ P ++ +
Sbjct: 249 LAAKMSVPLILLIMFPIVILILAPGMMQMT 278
>gi|148655544|ref|YP_001275749.1| type II secretion system protein [Roseiflexus sp. RS-1]
gi|148567654|gb|ABQ89799.1| type II secretion system protein [Roseiflexus sp. RS-1]
Length = 299
Score = 163 bits (414), Expect = 3e-38, Method: Composition-based stats.
Identities = 69/266 (25%), Positives = 125/266 (46%), Gaps = 15/266 (5%)
Query: 68 ASSRLRTRDSKSLRNFVKKLN-----LKAILVDENIVNKLRAAGFRSEYSLNILLVVRLV 122
A + R+R ++ +R + +L L+ + E L AG + +++ V+L
Sbjct: 39 AHTGPRSRYARWVRPYALRLASNVTALRGLTDFEKTARMLDYAGNPAGMTVHEFHGVQLY 98
Query: 123 VPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRA 182
+ L++G +W L ++++ GF P +W+ V++RQ +I A
Sbjct: 99 GGLAGLLIGGVWF-------ALGLPLGAILLVILPLGGFFYPLLWLRGRVKQRQHAITVA 151
Query: 183 WPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENF 242
PD LD+L +CV +G+ D AL + E G PL EEM + EL R+ AF N
Sbjct: 152 LPDLLDMLAVCVSAGMGFDIALTLLVERGEG---PLYEEMGRMLHELQMGAPREQAFRNL 208
Query: 243 YNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPM 302
R D +R AL+Q++ G+ I +L + R+ R A ++ A K+T+ +
Sbjct: 209 AARNSSDALRGFIDALLQAEELGSPIATTLERQAEDIRTGRRYRAREEGAKAATKITLIV 268
Query: 303 IIFFLPVLILVIIGPAILSIIDTMKD 328
++ P ++ +II +SI+ + +
Sbjct: 269 VVLVTPSVLCLIIAALGMSIMRSTRG 294
>gi|323493929|ref|ZP_08099046.1| putative Flp pilus assembly protein TadC [Vibrio brasiliensis LMG
20546]
gi|323311870|gb|EGA65017.1| putative Flp pilus assembly protein TadC [Vibrio brasiliensis LMG
20546]
Length = 288
Score = 163 bits (413), Expect = 3e-38, Method: Composition-based stats.
Identities = 59/250 (23%), Positives = 124/250 (49%), Gaps = 5/250 (2%)
Query: 74 TRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGII 133
TR+ + + VK + E KL AAGF S+Y ++ +++++ L L +I
Sbjct: 43 TREERKRVDLVKTALSQFSFNKEETRKKLVAAGFYSDYLADVYYLMKII--PFTLCLALI 100
Query: 134 WIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLIC 193
+ E F L L ++ P ++++ + I P LDL+ +C
Sbjct: 101 GFDYFKGETEIAFSLLYLLGALGLFI--IGPDAFVASRGKANTKHISSRLPFLLDLMNVC 158
Query: 194 VESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRN 253
V +G++I+ +L +++++ L+ + +T+ + S L + A E FY+ ++
Sbjct: 159 VHTGMTIESSLDYLSKELVTVDRNLAYVVRVTV-DRSRLVGLEKALEEFYDLVPTSESQS 217
Query: 254 ATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILV 313
++QS ++G+SIG L L ++ R +M+ E++ +G K+++P+I F + ++++
Sbjct: 218 FVMTMVQSLQFGSSIGPVLATLATDIRELNMMDLEERIGKMGAKMSIPLIAFIMVPIVVL 277
Query: 314 IIGPAILSII 323
I P IL ++
Sbjct: 278 IAAPGILRML 287
>gi|323341960|ref|ZP_08082193.1| flp pilus assembly protein TadC [Erysipelothrix rhusiopathiae ATCC
19414]
gi|322464385|gb|EFY09578.1| flp pilus assembly protein TadC [Erysipelothrix rhusiopathiae ATCC
19414]
Length = 306
Score = 163 bits (413), Expect = 3e-38, Method: Composition-based stats.
Identities = 71/313 (22%), Positives = 139/313 (44%), Gaps = 18/313 (5%)
Query: 23 SIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRN 82
+I I+A V L KS+ +++ + + +S + S +T + L+
Sbjct: 4 AITGAIFAYVFVDFVMSVLTG--KSLVIKKRLDETKNSSSQKHGSDDILDKTFQERFLQP 61
Query: 83 FVKKL-------NLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWI 135
V KL + ++L AG + + +++ + F ++G+
Sbjct: 62 IVDKLIHAVSTMLPVKAESQLKLADRLLKAGI--TTNPKDYRAMNVIIIVGFGLVGLYLA 119
Query: 136 FGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVE 195
R+ +++ G+ + + KR+ IK P+ +D+L + V
Sbjct: 120 I----TSHQRGFSRIMYMMMGMAGGYVYRRYSLEGKITKRKKIIKGQLPEVMDILSVSVV 175
Query: 196 SGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNAT 255
+G+S DQAL V G PL EE + E+ R+ A RT+++ V++ T
Sbjct: 176 AGLSFDQALGHVTTKAEG---PLIEEFRICQREIMLGKPRKEALNRLSERTEIEEVKSFT 232
Query: 256 QALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVII 315
A+IQ+D G S+ + L R+ + E++AA + K+ +PM++F PV+ ++++
Sbjct: 233 NAIIQADELGISLQNVLMSQSQMIRTSHRQDVEERAAKIPVKILIPMVLFIFPVIFIILL 292
Query: 316 GPAILSIIDTMKD 328
GPA+ +IID +
Sbjct: 293 GPAVPTIIDALGG 305
>gi|167824379|ref|ZP_02455850.1| type II secretion system protein [Burkholderia pseudomallei 9]
Length = 266
Score = 163 bits (413), Expect = 4e-38, Method: Composition-based stats.
Identities = 51/239 (21%), Positives = 94/239 (39%), Gaps = 6/239 (2%)
Query: 88 NLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQ 147
L +V + L G+ ++ I L R+ I + E
Sbjct: 29 RLGKQIVADEDRMLLEQCGYVDAHTRGIFLSARIACAIALPAAVAL------VGGETVRT 82
Query: 148 LRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRV 207
V L GF P ++ R+ S+ P +D+L + G+S+DQ+++ V
Sbjct: 83 HLGAWVALSVIAGFMLPKTYVRRRAAARRQSVVDEMPLLVDMLRLLQGVGLSLDQSIQVV 142
Query: 208 AEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTS 267
D G LS E+ + + R+ + + + +R + LIQ D++G +
Sbjct: 143 TNDFRGMLPVLSSELGIAQRQFVAGRTREQSLQRLATSFDNEDLRAIVRLLIQVDKHGGA 202
Query: 268 IGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
+ + L+ R R ++ L K+T MI+ LP L +V GP +L++ +
Sbjct: 203 VQEPLKQFGDRLREVRRAMLRERIGRLTVKMTGVMILTLLPALFIVTAGPGMLAVTHAL 261
>gi|294139875|ref|YP_003555853.1| Flp pilus assembly protein TadC [Shewanella violacea DSS12]
gi|293326344|dbj|BAJ01075.1| Flp pilus assembly protein TadC [Shewanella violacea DSS12]
Length = 293
Score = 163 bits (413), Expect = 4e-38, Method: Composition-based stats.
Identities = 67/239 (28%), Positives = 133/239 (55%), Gaps = 8/239 (3%)
Query: 91 AILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWI-FGYDKLLEYPFQLR 149
I V ++I L AGF S+++ ++ +V +L+V I I + + F DK++
Sbjct: 61 KIRVSDDIKALLLRAGFYSDHAASLFVVAKLLVAISCFIGWMAYSGFSLDKII------- 113
Query: 150 VGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAE 209
+ ++ +G W+ + S I A PDALDL+++CVESG++++ RV +
Sbjct: 114 LAKGVVFAVIGGIGVEHWVKFRARLVSSRIAGATPDALDLMVVCVESGLTLEAVFGRVGQ 173
Query: 210 DIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIG 269
++ S LS E L+T AEL L +R A +N RT + + N AL Q+++YG+ I
Sbjct: 174 EMVNFSPELSREWLITEAELRLLDSRPQALKNLALRTGIIEIENMVIALSQAEKYGSPIA 233
Query: 270 DSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMKD 328
S+R++ S++R + + E+K + K+++P+++ + ++++I+ P I+ ++ ++ +
Sbjct: 234 KSMRLIASDSRQHQYLALEEKVGKIPAKMSMPLVVLVMIPVVVLIVAPTIIELMTSIGE 292
>gi|167902893|ref|ZP_02490098.1| type II secretion system protein [Burkholderia pseudomallei NCTC
13177]
Length = 264
Score = 163 bits (412), Expect = 4e-38, Method: Composition-based stats.
Identities = 51/239 (21%), Positives = 94/239 (39%), Gaps = 6/239 (2%)
Query: 88 NLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQ 147
L +V + L G+ ++ I L R+ I + E
Sbjct: 27 RLGKQIVADEDRMLLEQCGYVDAHTRGIFLSARIACAIALPAAVAL------VGGETVRT 80
Query: 148 LRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRV 207
V L GF P ++ R+ S+ P +D+L + G+S+DQ+++ V
Sbjct: 81 HLGAWVALSVIAGFMLPKTYVRRRAAARRQSVVDEMPLLVDMLRLLQGVGLSLDQSIQVV 140
Query: 208 AEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTS 267
D G LS E+ + + R+ + + + +R + LIQ D++G +
Sbjct: 141 TNDFRGMLPVLSSELGIAQRQFVAGRTREQSLQRLATSFDNEDLRAIVRLLIQVDKHGGA 200
Query: 268 IGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
+ + L+ R R ++ L K+T MI+ LP L +V GP +L++ +
Sbjct: 201 VQEPLKQFGDRLREVRRAMLRERIGRLTVKMTGVMILTLLPALFIVTAGPGMLAVTHAL 259
>gi|84386792|ref|ZP_00989817.1| putative type IV pilus protein [Vibrio splendidus 12B01]
gi|84378320|gb|EAP95178.1| putative type IV pilus protein [Vibrio splendidus 12B01]
Length = 283
Score = 163 bits (412), Expect = 4e-38, Method: Composition-based stats.
Identities = 69/296 (23%), Positives = 135/296 (45%), Gaps = 34/296 (11%)
Query: 33 IPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAI 92
+ S + +R+ V+ S + +ASS+ R + +K R
Sbjct: 21 LSSFKRDVVAERLTRVSSY----------SSKYTTASSKWRFQGAKPRR----------- 59
Query: 93 LVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGA 152
KL G+ + + L +RL+ + I W ++L A
Sbjct: 60 -------QKLILIGWLNPNAEIYFLGLRLLTMVTG---SIAWYVTRIQVLNMNSVSECIA 109
Query: 153 VILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIG 212
+ ++ + F + V + + I R PDA+DL+++CV SG++++ R V E++
Sbjct: 110 IAIVVGILF---DRILDWRVNQVRMQISRVIPDAVDLMVVCVASGLTLEAVFRCVGEEMR 166
Query: 213 GQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSL 272
S LS E LLT E+S L + Q A N R Q+ + N + Q+ +YGT + ++L
Sbjct: 167 AISPALSREWLLTATEISVLDSPQTALSNLDKRVQLPDINNIVTTMNQALQYGTPLAEAL 226
Query: 273 RVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMKD 328
+++ S++R +E E+ + K++ P+++F + ++ +I+ P +LS+ T+
Sbjct: 227 KLIASDSRQYHFLELEEWVGKIPAKMSFPLVVFIMLPVVGIIVVPIMLSLKQTLGG 282
>gi|220913395|ref|YP_002488704.1| type II secretion system protein [Arthrobacter chlorophenolicus A6]
gi|219860273|gb|ACL40615.1| type II secretion system protein [Arthrobacter chlorophenolicus A6]
Length = 294
Score = 163 bits (412), Expect = 5e-38, Method: Composition-based stats.
Identities = 60/232 (25%), Positives = 115/232 (49%), Gaps = 9/232 (3%)
Query: 98 IVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIG 157
+ L AG + L +L +L + + + G L A + +
Sbjct: 72 LDRLLALAGRPASMPLGKVLGTKLALGLAGV------GLGLHLTAIGSTPLMKLAGLFVL 125
Query: 158 YVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVP 217
++G+ P + + + Q+RQ +++ + LD +LI VE+G+ + A+ R ++ G P
Sbjct: 126 FLGYFIPDLLLYSKGQERQKTMQLELANTLDQMLISVEAGLGFEGAMARAGDNGNG---P 182
Query: 218 LSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVS 277
L+EE++ T+ ++ +R+ ++ RT + +R+ QA++Q+D YG +I LRV
Sbjct: 183 LAEELVRTLQDMQVGRSRRESYTALAARTSIPELRSFVQAVVQADTYGIAISRVLRVQAK 242
Query: 278 ETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMKDH 329
R +R AE+KA L + P++ F PVL + I+GPA+++ + T
Sbjct: 243 VMRVKRRQRAEEKAMKLPVMILFPLLFFIFPVLFIAILGPAVINTVVTFTGQ 294
>gi|167816004|ref|ZP_02447684.1| type II secretion system protein [Burkholderia pseudomallei 91]
Length = 272
Score = 162 bits (411), Expect = 5e-38, Method: Composition-based stats.
Identities = 51/239 (21%), Positives = 94/239 (39%), Gaps = 6/239 (2%)
Query: 88 NLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQ 147
L +V + L G+ ++ I L R+ I + E
Sbjct: 35 RLGKQIVADEDRMLLEQCGYVDAHTRGIFLSARIACAIALPAAVAL------VGGETVRT 88
Query: 148 LRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRV 207
V L GF P ++ R+ S+ P +D+L + G+S+DQ+++ V
Sbjct: 89 HLGAWVALSVIAGFMLPKTYVRRRAAARRQSVVDEMPLLVDMLRLLQGVGLSLDQSIQVV 148
Query: 208 AEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTS 267
D G LS E+ + + R+ + + + +R + LIQ D++G +
Sbjct: 149 TNDFRGMLPVLSSELGIAQRQFVAGRTREQSLQRLATSFDNEDLRAIVRLLIQVDKHGGA 208
Query: 268 IGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
+ + L+ R R ++ L K+T MI+ LP L +V GP +L++ +
Sbjct: 209 VQEPLKQFGDRLREVRRAMLRERIGRLTVKMTGVMILTLLPALFIVTAGPGMLAVTHAL 267
>gi|153833197|ref|ZP_01985864.1| bipartite nuclear localization signal containing protein [Vibrio
harveyi HY01]
gi|156977404|ref|YP_001448310.1| hypothetical protein VIBHAR_06191 [Vibrio harveyi ATCC BAA-1116]
gi|148870468|gb|EDL69383.1| bipartite nuclear localization signal containing protein [Vibrio
harveyi HY01]
gi|156528998|gb|ABU74083.1| hypothetical protein VIBHAR_06191 [Vibrio harveyi ATCC BAA-1116]
Length = 280
Score = 162 bits (411), Expect = 5e-38, Method: Composition-based stats.
Identities = 58/306 (18%), Positives = 128/306 (41%), Gaps = 29/306 (9%)
Query: 18 ITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDS 77
+ ++ L +++ S E+R K +A+ + R +R +
Sbjct: 1 MMLLTALIVLFVSLLFLIFDSLRTEQRRKKIALY-------------VGGNAHRSPSRVN 47
Query: 78 KSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFG 137
+ F K+ + + K+ AG+ + + P L+LG++ F
Sbjct: 48 RFFVRFGKEHR-------QELEQKMIEAGYYNTEW------AKFYFPAKLLVLGLVSGFV 94
Query: 138 YDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESG 197
+ QL V LI + P + + P LD++ +CV++G
Sbjct: 95 LLSDMTQSNQLIVITFTLIAVI--VGPDSLLQMRRKILIRKTSAQLPYLLDMMSVCVQTG 152
Query: 198 ISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQA 257
++I+ AL + +++ L ++ T ++ + + + A + R +R+
Sbjct: 153 MTIEAALVYLGKELAEFDSDLCYQIKRT-SDSAKIHGLEKALNDLSERIPTPPIRSFVLT 211
Query: 258 LIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGP 317
+IQ+ +YGTS+ L L + R +++ E+K L K++VP+I+F + ++++I+ P
Sbjct: 212 IIQNLQYGTSVAQVLSDLAEDMRKVQILTVEEKVGKLSAKMSVPLILFIMFPIVILILAP 271
Query: 318 AILSII 323
I+ +
Sbjct: 272 GIMQMT 277
>gi|87308908|ref|ZP_01091046.1| bacterial type II secretion system protein [Blastopirellula marina
DSM 3645]
gi|87288251|gb|EAQ80147.1| bacterial type II secretion system protein [Blastopirellula marina
DSM 3645]
Length = 321
Score = 162 bits (411), Expect = 6e-38, Method: Composition-based stats.
Identities = 54/251 (21%), Positives = 110/251 (43%), Gaps = 1/251 (0%)
Query: 78 KSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFG 137
L + K+ E + + AG+ + + L VR + ++ +
Sbjct: 49 GGLTRAFAGILPKSKQSYETLQKDMVKAGYYHRDAADEFLAVRNAALVAWVFFVGATLIA 108
Query: 138 YDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESG 197
E QL + + + + F P V IS+ R S I+ A PDALD++ + +G
Sbjct: 109 LADANETTTQLILIVSVAVLILIFAIPRVIISSQAAARVSRIQHALPDALDMITMTTTAG 168
Query: 198 ISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQA 257
+ + ++++RV++++ L+ E+++ + + A +NF R ++ V
Sbjct: 169 LPLQKSIKRVSDEMVRSHEDLACELMILDRQAETG-SLGQAIQNFAKRLEVPEVNALASL 227
Query: 258 LIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGP 317
+ Q+ R G S+ + R R R AE++ KL +P+I P + ++++GP
Sbjct: 228 VTQAQRIGGSVAGAFRDFADSIRRSRRQLAEERGNQNSIKLLIPVIFLLAPPVYILLLGP 287
Query: 318 AILSIIDTMKD 328
++L + D M
Sbjct: 288 SVLRLQDFMGS 298
>gi|167719782|ref|ZP_02403018.1| type II secretion system protein [Burkholderia pseudomallei DM98]
Length = 273
Score = 162 bits (411), Expect = 6e-38, Method: Composition-based stats.
Identities = 51/239 (21%), Positives = 94/239 (39%), Gaps = 6/239 (2%)
Query: 88 NLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQ 147
L +V + L G+ ++ I L R+ I + E
Sbjct: 36 RLGKQIVADEDRMLLEQCGYVDAHTRGIFLSARIACAIALPAAVAL------VGGETVRT 89
Query: 148 LRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRV 207
V L GF P ++ R+ S+ P +D+L + G+S+DQ+++ V
Sbjct: 90 HLGAWVALSVIAGFMLPKTYVRRRAAARRQSVVDEMPLLVDMLRLLQGVGLSLDQSIQVV 149
Query: 208 AEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTS 267
D G LS E+ + + R+ + + + +R + LIQ D++G +
Sbjct: 150 TNDFRGMLPVLSSELGIAQRQFVAGRTREQSLQRLATSFDNEDLRAIVRLLIQVDKHGGA 209
Query: 268 IGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
+ + L+ R R ++ L K+T MI+ LP L +V GP +L++ +
Sbjct: 210 VQEPLKQFGDRLREVRRAMLRERIGRLTVKMTGVMILTLLPALFIVTAGPGMLAVTHAL 268
>gi|149909542|ref|ZP_01898196.1| bipartite nuclear localization signal containing protein, similarto
TadC [Moritella sp. PE36]
gi|149807447|gb|EDM67398.1| bipartite nuclear localization signal containing protein, similarto
TadC [Moritella sp. PE36]
Length = 296
Score = 162 bits (410), Expect = 7e-38, Method: Composition-based stats.
Identities = 49/249 (19%), Positives = 113/249 (45%), Gaps = 5/249 (2%)
Query: 75 RDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIW 134
L + L+ + I K AAGF ++ + V+ +V I ++
Sbjct: 50 ESKGFLERLSELLSKAFTSNQDEIKMKFIAAGFYQFKYASLFMPVKYLVLFSGGIG--LY 107
Query: 135 IFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICV 194
E + + A L+ + P ++ ++ I P LDL+ +CV
Sbjct: 108 FLSESMAFESASLIAIIASWLVLII--ILPDAVLNLRAKQLTEKISNKLPYLLDLMAVCV 165
Query: 195 ESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNA 254
++G++++ A+ +++++ L+ ++ T + + + +A + Y R + +R+
Sbjct: 166 QTGMTLESAISYLSKEMTEFDKDLTNVLVKTN-DRARIVGLAMALDELYLRVPSNEMRSF 224
Query: 255 TQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVI 314
L QS ++G+SI L L + R +++ E+K L K+++P+I+F + ++++I
Sbjct: 225 VMTLKQSLQFGSSISQVLTTLSGDIRQVQILGLEEKIGKLAAKMSIPLIVFIMVPVVILI 284
Query: 315 IGPAILSII 323
P I+ ++
Sbjct: 285 AAPGIMRMM 293
>gi|222111305|ref|YP_002553569.1| type II secretion system protein [Acidovorax ebreus TPSY]
gi|221730749|gb|ACM33569.1| type II secretion system protein [Acidovorax ebreus TPSY]
Length = 288
Score = 162 bits (410), Expect = 8e-38, Method: Composition-based stats.
Identities = 54/232 (23%), Positives = 105/232 (45%), Gaps = 10/232 (4%)
Query: 94 VDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAV 153
+E LR AG + ++V + +LG+ +L + + +
Sbjct: 65 AEERYTTALRRAGQDYALTPRQFFAGKVVSAVAGALLGV--------MLSGMLEGGLSII 116
Query: 154 ILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGG 213
++I + F P +W+ ++R +I +A P +DLL + +E+G+++ A+++ G
Sbjct: 117 VVIAMLAFFYPDLWLKETTKQRNLAILKALPFFIDLLTLSIEAGLNLSGAMQQAVAKSAG 176
Query: 214 QSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLR 273
PL E+ + ++ R A +F R + + AL+Q ++ G+S+G LR
Sbjct: 177 --GPLMVEINRVLRDVRAGKARIDALRDFSARLDFTPITSFVSALVQGEKTGSSLGPILR 234
Query: 274 VLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDT 325
+ R+ER + AEK A K+ P+I F P +VI P + + +
Sbjct: 235 AQAEQRRTERFLRAEKLAMEAPVKMLGPLIFFIFPCTFIVIGFPIAMKFLAS 286
>gi|27378607|ref|NP_770136.1| hypothetical protein blr3496 [Bradyrhizobium japonicum USDA 110]
gi|27351755|dbj|BAC48761.1| blr3496 [Bradyrhizobium japonicum USDA 110]
Length = 302
Score = 161 bits (409), Expect = 9e-38, Method: Composition-based stats.
Identities = 63/233 (27%), Positives = 122/233 (52%), Gaps = 6/233 (2%)
Query: 96 ENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVIL 155
+ + L+++GF +L + V+ V + I+ +L + ++
Sbjct: 73 DQLRTILQSSGFNHRRALPTWIGVKAVAMFLCPIIAGC----VAQLFAKSMTDVLVFTLM 128
Query: 156 IGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQS 215
VG P + ++ L ++ ++I+ PD +DLL++C E+G+ ++ L RVA+++ +
Sbjct: 129 GVMVGILGPRLILAVLKRRFDAAIRVGTPDMIDLLVVCSEAGMGLESGLARVAQEMSETN 188
Query: 216 VPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVL 275
P++ + + +L LPNR AF+ T D +R + QS +YGT +G +LR +
Sbjct: 189 PPMARVLHCLLDDLRILPNRSDAFDKLG--TTSDGLRRFGTMVAQSLQYGTPVGQALRNI 246
Query: 276 VSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMKD 328
+ R ER+ + E++A LG KLT+PM++F LP + +V+ G IL ++ +
Sbjct: 247 AVDLRRERITKLEERAHKLGAKLTIPMVLFLLPAMFVVLGGSPILHLVRSFAS 299
>gi|312883759|ref|ZP_07743478.1| Flp pilus assembly protein TadC [Vibrio caribbenthicus ATCC
BAA-2122]
gi|309368508|gb|EFP96041.1| Flp pilus assembly protein TadC [Vibrio caribbenthicus ATCC
BAA-2122]
Length = 284
Score = 161 bits (408), Expect = 1e-37, Method: Composition-based stats.
Identities = 56/245 (22%), Positives = 115/245 (46%), Gaps = 6/245 (2%)
Query: 84 VKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLE 143
+ + + KL G+ S + +I + R +GI W F L
Sbjct: 45 ASRGGVLRWATNPKRAQKLAMLGYVSSQADSIFMTARAS---AMTGVGIAWFFFLQ--LS 99
Query: 144 YPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQA 203
+ V++ +G + V + I + PDALDL+++CV SG +++
Sbjct: 100 FDIGGVAQGVVIALSLGIAI-DRVLDWRVNVVRQEIAKHIPDALDLMVVCVSSGQNLEAT 158
Query: 204 LRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDR 263
V +++ S LS E L+T E++ L + QVA N R + + N + Q+ +
Sbjct: 159 FNTVGQEMKSISPSLSREWLVTSTEMAVLDSPQVALTNLDARLALPEINNMIATMSQALK 218
Query: 264 YGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSII 323
+G + ++L+++ S++R ++E E+ + K++ P+++F + ++++I+ P +LSI
Sbjct: 219 FGAPMAEALKLIASDSRQYHMLELEEWVGKIPAKMSFPLVVFIMLPVVVIIVAPMVLSIF 278
Query: 324 DTMKD 328
T+
Sbjct: 279 QTIGQ 283
>gi|78066135|ref|YP_368904.1| Flp pilus assembly protein TadC [Burkholderia sp. 383]
gi|77966880|gb|ABB08260.1| Flp pilus assembly protein TadC [Burkholderia sp. 383]
Length = 332
Score = 161 bits (407), Expect = 2e-37, Method: Composition-based stats.
Identities = 50/259 (19%), Positives = 109/259 (42%), Gaps = 6/259 (2%)
Query: 70 SRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLI 129
+ LR R +++ L+ + L GF + + + R+ ++
Sbjct: 77 AGLRERFEDVGMRWLET-GFSRYLIADEDRQLLEQCGFVDVRARALFVSARIACAVLLPA 135
Query: 130 LGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDL 189
L ++ + + + V V G+ P +++ R+ SI P +D+
Sbjct: 136 LAVLVLISRGHGGRWALWISVALV-----TGYMLPKIYVRRRATARRRSISAELPLLVDM 190
Query: 190 LLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMD 249
L + G+S+DQ+++ V D LS E+ + + + R+ + + N +
Sbjct: 191 LRLLQGVGLSLDQSIQVVVHDFQTMLPVLSWELAVAQRQFAAGRTREQSLQRLTNSFDNE 250
Query: 250 CVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPV 309
+R + LIQ D++G ++ + L+ R R ++ L K+T MI+ LP
Sbjct: 251 DLRAIVRLLIQVDKHGGAVQEPLKQFGDRLREGRRATLREQIGRLTVKMTGVMIVTLLPA 310
Query: 310 LILVIIGPAILSIIDTMKD 328
L++V GP +++++ + +
Sbjct: 311 LLIVTAGPGVMTVLAALAE 329
>gi|317122043|ref|YP_004102046.1| type II secretion system F domain [Thermaerobacter marianensis DSM
12885]
gi|315592023|gb|ADU51319.1| Type II secretion system F domain [Thermaerobacter marianensis DSM
12885]
Length = 331
Score = 160 bits (406), Expect = 2e-37, Method: Composition-based stats.
Identities = 51/165 (30%), Positives = 91/165 (55%), Gaps = 3/165 (1%)
Query: 164 PSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEML 223
P + + +R+ + RA PD +DLL + VE+G+ D A+++V+E P+S E
Sbjct: 170 PDAVLRDRAARRRRQMARALPDVMDLLSVSVEAGLGFDGAIQKVSEKF---PAPVSTEFR 226
Query: 224 LTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSER 283
+ EL R+ A + +R ++ +R+ A+IQ+DR G S+ LRV + R +R
Sbjct: 227 QYLKELRLGVEREEALRSLADRCELPELRSFAAAVIQADRLGVSLARVLRVQAEQLRFQR 286
Query: 284 LMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMKD 328
AE++A K+ +P+++F P L +V++GPA++ I+ D
Sbjct: 287 KQRAEEQAMKTPIKMLLPLVLFIFPTLFIVLLGPALIQILAAFND 331
>gi|309792339|ref|ZP_07686809.1| type II secretion system protein [Oscillochloris trichoides DG6]
gi|308225654|gb|EFO79412.1| type II secretion system protein [Oscillochloris trichoides DG6]
Length = 309
Score = 160 bits (406), Expect = 2e-37, Method: Composition-based stats.
Identities = 71/298 (23%), Positives = 134/298 (44%), Gaps = 14/298 (4%)
Query: 31 VVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLK 90
+V+ E+ +R+ + + R+ +K++ + K K
Sbjct: 26 LVLRMRKPDEISERLNTFT----ERELTLEELELQQPIMDRIFIPAAKAMLATLGKYGAK 81
Query: 91 AILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRV 150
E + L+ AG + + + +R+ + ++ + + L +
Sbjct: 82 QSA--ERLRTNLQQAGNPGGITPTMFVGLRVGLALVLGL-----LITVITLRSMELSQAL 134
Query: 151 GAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAED 210
++ +G+ P W+ ++KR+ SI +A PDALDLL I VE+G++ D AL+RV +
Sbjct: 135 LYSMIGFVLGYMLPVTWLGQQIKKRKKSITKALPDALDLLCISVEAGLAFDLALQRVTQK 194
Query: 211 IGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGD 270
LS E ++++ R+ A ++ RT +D V+ T A+IQ+D+ G S+
Sbjct: 195 WDD---ELSREFKKVLSDIRLGRTRREALKDLGVRTGVDDVQTFTAAVIQADQLGVSMSK 251
Query: 271 SLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMKD 328
LR+ + R R AE+ A K+ PM+ P L +VI+GPA+ I+++
Sbjct: 252 ILRLQSDQMRQRRRQRAEEAAQQAPIKMLFPMVFLIFPALFVVILGPAVPRIMESFGS 309
>gi|319795559|ref|YP_004157199.1| type II secretion system f domain [Variovorax paradoxus EPS]
gi|315598022|gb|ADU39088.1| Type II secretion system F domain [Variovorax paradoxus EPS]
Length = 295
Score = 160 bits (406), Expect = 2e-37, Method: Composition-based stats.
Identities = 65/314 (20%), Positives = 130/314 (41%), Gaps = 23/314 (7%)
Query: 14 LAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLR 73
+ +AI + +I + + SL + + T + RL
Sbjct: 5 ILLAIIFLCATVGVILLLYMISLIRKA---------------KPSERTHMDPLPRMLRLV 49
Query: 74 TRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGII 133
L+ V ++ ++LV +L+ AG + V++V ++ LG+
Sbjct: 50 WPVVNILQFHVSEIAPTSMLVKRK--RQLQLAGLEFVLKAEEFIAVQVVSLVVVAALGL- 106
Query: 134 WIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLIC 193
LL +V ++ +G+ P +W+ + +KR+ +I R P LD++ +C
Sbjct: 107 ---WTAGLLGAMAGTKVWVTLMSCAMGWYYPVMWMRDRRKKREKNILRTLPGYLDMITLC 163
Query: 194 VESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRN 253
++G+S+ A+ + + G L E + E+ +R A R +++
Sbjct: 164 CQAGLSLTGAIAQAVQK--GPGGALGIEFDRMMREMRTGVSRMDALNAMAERLDNKHIKS 221
Query: 254 ATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILV 313
L Q++ G S+ D+L + + R+ER AEK A K+ P++IF PV ++
Sbjct: 222 LVSNLTQAESLGASLADTLSAISDQRRTERFQHAEKLAMEAPVKMIGPLVIFIFPVTFII 281
Query: 314 IIGPAILSIIDTMK 327
I P ++ + T +
Sbjct: 282 IFFPLVMQFLQTQR 295
>gi|319791197|ref|YP_004152837.1| type II secretion system f domain [Variovorax paradoxus EPS]
gi|315593660|gb|ADU34726.1| Type II secretion system F domain [Variovorax paradoxus EPS]
Length = 296
Score = 160 bits (406), Expect = 2e-37, Method: Composition-based stats.
Identities = 65/312 (20%), Positives = 129/312 (41%), Gaps = 23/312 (7%)
Query: 14 LAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLR 73
+ +AI + +I + + SL R + T + RL
Sbjct: 5 ILLAIIFLCATTGVILLLYMISLIRKA---------------RPSERTHMDPLPRMLRLV 49
Query: 74 TRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGII 133
L+ V ++ ++LV +L+ AG + V+ V +I LG+
Sbjct: 50 WPVVNILQFHVSEIAPTSMLVKRK--RQLQLAGLEFVLKAEEFIAVQCVSMLIVAALGL- 106
Query: 134 WIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLIC 193
LL+ ++ + G+ P +W+ + ++R+ I R P LD++ +C
Sbjct: 107 ---WTAGLLDATAGTKIWVTLASCVTGWLYPVMWMRDRRKRREKDILRTLPGYLDMITLC 163
Query: 194 VESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRN 253
++G+S+ A+ + + G L +E + E+ +R A +R +++
Sbjct: 164 CQAGLSLTGAIAQAVQK--GPGGALGQEFDRMMREMRTGASRMDALNALADRLDNKHIKS 221
Query: 254 ATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILV 313
L Q++ G S+ D+L + + R+ER AEK A K+ P++IF PV ++
Sbjct: 222 LVSNLTQAESLGASLADTLSAISDQRRTERFQMAEKLAMEAPVKMIGPLVIFIFPVTFII 281
Query: 314 IIGPAILSIIDT 325
I P ++ ++T
Sbjct: 282 IFFPLVMQFLET 293
>gi|255658710|ref|ZP_05404119.1| putative type II secretion system protein [Mitsuokella multacida
DSM 20544]
gi|260849099|gb|EEX69106.1| putative type II secretion system protein [Mitsuokella multacida
DSM 20544]
Length = 307
Score = 160 bits (405), Expect = 3e-37, Method: Composition-based stats.
Identities = 61/316 (19%), Positives = 139/316 (43%), Gaps = 15/316 (4%)
Query: 14 LAVAITTAVSIFSLIYAVVIPSLG-SGELEKRMKSVAVEREILRK--QQITSLQKDSASS 70
L ++ +F ++ ++ + + +R++S+ Q + + +
Sbjct: 4 LLFVLSLTAVLFLILLGLIRSKVQPKSTMRQRIESLETLDVQPGAFGQPQAAQPEARKPA 63
Query: 71 RLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLIL 130
+ +L + L L+ I I ++ AG E+ + L+ ++ +
Sbjct: 64 GGIKQMLGALATTLTPLRLRPI-----IQKRIMLAGKSREWGVAEFFGSCLLGAVVMWLF 118
Query: 131 GIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLL 190
++ + + Y + V L+G +G P V+++ +Q+RQ I+ P+ LDLL
Sbjct: 119 ALVMV----RTATYAPVQKAMMVFLLGLLGGLMPVVFLNTTIQRRQKQIEHQLPEVLDLL 174
Query: 191 LICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDC 250
+ V++G+S D AL ++ + G P +E ++ R+ A + +R ++
Sbjct: 175 CVSVQAGLSFDAALSKITARMKG---PFIDECRRMQDDIRMGVVRRTAMRSMADRCGLED 231
Query: 251 VRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVL 310
V ++IQ++R GTS+G +L+ R R + +A K+ P+++F P +
Sbjct: 232 VSLFMTSIIQAERLGTSMGKTLKNQADNIRERRRQYVKAQAMKAPVKIVFPLVLFIFPAI 291
Query: 311 ILVIIGPAILSIIDTM 326
+V + P++L ++ +
Sbjct: 292 FVVTLVPSLLYLLKNL 307
>gi|149927029|ref|ZP_01915287.1| putative tight adherence tadc related transmembrane protein
[Limnobacter sp. MED105]
gi|149824250|gb|EDM83470.1| putative tight adherence tadc related transmembrane protein
[Limnobacter sp. MED105]
Length = 317
Score = 160 bits (405), Expect = 3e-37, Method: Composition-based stats.
Identities = 61/312 (19%), Positives = 133/312 (42%), Gaps = 7/312 (2%)
Query: 18 ITTAVSIFSLIYAVVIPSLGS--GELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTR 75
+ + + L + + SL S EK + + E+ RK Q ++ ++ + + T
Sbjct: 7 LAIGIFLLGLGFVGLAWSLLSQTSRKEKALARIDEYTELRRKVQSSANMRNQVPTSVLTG 66
Query: 76 DSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWI 135
+ L K V+E L AGF E L+ +++R+ + ++ L+ I
Sbjct: 67 RIERLGQQFSKTKAFTYFVEEEDKKLLGRAGFGREEDLSRFVLIRIALGLLGLL-----I 121
Query: 136 FGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVE 195
+ + + VI + +GF AP ++ + + R+++ +R +D++ +
Sbjct: 122 GLFLNWDAGFGAIPMIQVIAVTGIGFMAPKWYLKTVGEGREAAFERELVAVVDVMRLLQG 181
Query: 196 SGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNAT 255
G+S+DQ++ + + + + A++ V + + D ++
Sbjct: 182 VGLSVDQSIEVMTSQLYDLVPITGRMLRRSRAQVKSGVPWIVMLKRMSSMYSSDEFKSFV 241
Query: 256 QALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVII 315
Q L Q +++G ++ + L+ + A++ L KLT M+I LP L+++
Sbjct: 242 QVLEQIEKFGGAVQEPLKQFSDRLVEKERANAKETMGKLTVKLTGVMVITMLPALLIMTG 301
Query: 316 GPAILSIIDTMK 327
GP I+SII +
Sbjct: 302 GPGIISIIRAFE 313
>gi|325673436|ref|ZP_08153127.1| type II secretion system protein [Rhodococcus equi ATCC 33707]
gi|325555457|gb|EGD25128.1| type II secretion system protein [Rhodococcus equi ATCC 33707]
Length = 296
Score = 160 bits (405), Expect = 3e-37, Method: Composition-based stats.
Identities = 53/165 (32%), Positives = 101/165 (61%), Gaps = 3/165 (1%)
Query: 164 PSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEML 223
P + + + Q+RQ++I+ A D LD + I VE+G+ + A++R A++ G PL+EE +
Sbjct: 134 PELLLQSRGQERQAAIELALADTLDQMTIAVEAGLGFEAAMQRAAKNGKG---PLAEEFI 190
Query: 224 LTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSER 283
T+ ++ +R++A+ + RT+ +R +A+IQ+D YG +I + LR SE R +R
Sbjct: 191 RTLQDIQMGQSRRIAYLDLAARTKAPNLRRFLRAVIQADEYGVAIAEVLRTQASEMRLKR 250
Query: 284 LMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMKD 328
AE+KA + K+ P++ LP + +VI+GPA++++++ +
Sbjct: 251 RQSAEEKAMKVPVKVLFPLMTCILPTIFIVILGPAVINMMEVLGG 295
>gi|217423679|ref|ZP_03455180.1| type II secretion system protein [Burkholderia pseudomallei 576]
gi|217393537|gb|EEC33558.1| type II secretion system protein [Burkholderia pseudomallei 576]
Length = 336
Score = 160 bits (405), Expect = 3e-37, Method: Composition-based stats.
Identities = 51/239 (21%), Positives = 95/239 (39%), Gaps = 6/239 (2%)
Query: 88 NLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQ 147
L +V + L G+ ++ I L R+ I + E
Sbjct: 99 RLGKQIVADEDRMLLEQCGYVDAHTRGIFLSARIACAIALPAAVAL------VGGETVRT 152
Query: 148 LRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRV 207
V L GF P +++ R+ S+ P +D+L + G+S+DQ+++ V
Sbjct: 153 HLGAWVALSVIAGFMLPKIYVRRRAAARRQSVVDEMPLLVDMLRLLQGVGLSLDQSIQVV 212
Query: 208 AEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTS 267
D G LS E+ + + R+ + + + +R + LIQ D++G +
Sbjct: 213 TNDFRGMLPVLSSELGIAQRQFVAGRTREQSLQRLATSFDNEDLRAIVRLLIQVDKHGGA 272
Query: 268 IGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
+ + L+ R R ++ L K+T MI+ LP L +V GP +L++ +
Sbjct: 273 VQEPLKQFGDRLREVRRAMLRERIGRLTVKMTGVMILTLLPALFIVTAGPGMLAVTHAL 331
>gi|254179954|ref|ZP_04886553.1| type II secretion system protein [Burkholderia pseudomallei 1655]
gi|184210494|gb|EDU07537.1| type II secretion system protein [Burkholderia pseudomallei 1655]
Length = 340
Score = 160 bits (405), Expect = 3e-37, Method: Composition-based stats.
Identities = 51/239 (21%), Positives = 95/239 (39%), Gaps = 6/239 (2%)
Query: 88 NLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQ 147
L +V + L G+ ++ I L R+ I + E
Sbjct: 103 RLGKQIVADEDRMLLEQCGYVDAHTRGIFLSARIACAIALPAAVAL------VGGETVRT 156
Query: 148 LRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRV 207
V L GF P +++ R+ S+ P +D+L + G+S+DQ+++ V
Sbjct: 157 HLGAWVALSVIAGFMLPKIYVRRRAAARRQSVVDEMPLLVDMLRLLQGVGLSLDQSIQVV 216
Query: 208 AEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTS 267
D G LS E+ + + R+ + + + +R + LIQ D++G +
Sbjct: 217 TNDFRGMLPVLSSELGIAQRQFVAGRTREQSLQRLATSFDNEDLRAIVRLLIQVDKHGGA 276
Query: 268 IGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
+ + L+ R R ++ L K+T MI+ LP L +V GP +L++ +
Sbjct: 277 VQEPLKQFGDRLREVRRAMLRERIGRLTVKMTGVMILTLLPALFIVTAGPGMLAVTHAL 335
>gi|312883313|ref|ZP_07743039.1| putative Flp pilus assembly protein TadC [Vibrio caribbenthicus
ATCC BAA-2122]
gi|309368929|gb|EFP96455.1| putative Flp pilus assembly protein TadC [Vibrio caribbenthicus
ATCC BAA-2122]
Length = 288
Score = 160 bits (404), Expect = 3e-37, Method: Composition-based stats.
Identities = 52/228 (22%), Positives = 115/228 (50%), Gaps = 5/228 (2%)
Query: 96 ENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVIL 155
+++ +L +AGF L + ++ ++ +F + +I L F V +V +
Sbjct: 65 DDLEKRLFSAGFYHPMILKLYYPLKYIIMFLFSVCILISFIVGIISLYDLFLYNVISVFM 124
Query: 156 IGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQS 215
I F P I ++ +I P LDL+ +CV +G++I+ +L +A+++
Sbjct: 125 I----FFIPDKIIGLRIKSNIKNISSRLPFLLDLMNVCVHTGMTIESSLEYLAKELQMVD 180
Query: 216 VPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVL 275
L+ + LT+ E + + A + FY+ ++ L+QS ++G+S+G L L
Sbjct: 181 RQLARVVTLTV-ERAKIVGLDKALQEFYDLVPTSESQSMVMTLVQSLQFGSSVGAVLSTL 239
Query: 276 VSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSII 323
+ R +M+ E+K +G K+T+P+++F + ++++I+ P ++ ++
Sbjct: 240 SKDIRELNMMDIEEKIGKMGAKMTMPLVVFIMIPMLVLIVAPKVMRVM 287
>gi|90412171|ref|ZP_01220177.1| hypothetical Flp pilus assembly protein TadC [Photobacterium
profundum 3TCK]
gi|90326895|gb|EAS43280.1| hypothetical Flp pilus assembly protein TadC [Photobacterium
profundum 3TCK]
Length = 283
Score = 160 bits (404), Expect = 3e-37, Method: Composition-based stats.
Identities = 53/266 (19%), Positives = 113/266 (42%), Gaps = 12/266 (4%)
Query: 58 QQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILL 117
+Q +S S + L F+ +L +++ + AGF + +
Sbjct: 25 EQAKQAHVESYLSAKKDGRLTRLNRFITRLGRNH---QQDLEQQFVDAGFYNTQFAKYYV 81
Query: 118 VVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQS 177
+L + I ++ II + + + P + +S +
Sbjct: 82 PAKLTLVIFTCVVVII--------SDLSLMNKAAISAVAMITILLVPEMVLSMRKKALIL 133
Query: 178 SIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQV 237
R P LD++ +CV++G++I+ AL ++ ++ L + T A+ + + +
Sbjct: 134 KTSRQLPYMLDMMSVCVQTGMTIEAALTYLSIELEAFDKDLCFHIKKT-ADGARVKGLEK 192
Query: 238 AFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPK 297
A R VR+ T LIQ+ +YGTSI + L L + R +++ E+K L K
Sbjct: 193 ALIELSERIPTPDVRSFTLTLIQNLQYGTSIANVLSALAEDMRKMQVLTMEEKIGKLAAK 252
Query: 298 LTVPMIIFFLPVLILVIIGPAILSII 323
++VP+I+ + ++++I+ P ++ +
Sbjct: 253 MSVPLILLIMFPIVILILAPGMMQMT 278
>gi|312139259|ref|YP_004006595.1| type ii secretion system integral membrane subunit [Rhodococcus
equi 103S]
gi|311888598|emb|CBH47910.1| putative type II secretion system integral membrane subunit
[Rhodococcus equi 103S]
Length = 296
Score = 160 bits (404), Expect = 4e-37, Method: Composition-based stats.
Identities = 53/165 (32%), Positives = 101/165 (61%), Gaps = 3/165 (1%)
Query: 164 PSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEML 223
P + + + Q+RQ++I+ A D LD + I VE+G+ + A++R A++ G PL+EE +
Sbjct: 134 PELLLQSRGQERQAAIELALADTLDQMTIAVEAGLGFEAAMQRAAKNGKG---PLAEEFI 190
Query: 224 LTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSER 283
T+ ++ +R++A+ + RT+ +R +A+IQ+D YG +I + LR SE R +R
Sbjct: 191 RTLQDIQMGQSRRIAYLDLAARTKAPNLRRFLRAVIQADEYGVAIAEVLRTQASEMRLKR 250
Query: 284 LMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMKD 328
AE+KA + K+ P++ LP + +VI+GPA++++++ +
Sbjct: 251 RQSAEEKAMKVPVKVLFPLMTCILPTIFIVILGPAVINMMEVLGG 295
>gi|53723518|ref|YP_102952.1| hypothetical protein BMA1286 [Burkholderia mallei ATCC 23344]
gi|76808991|ref|YP_333345.1| hypothetical protein BURPS1710b_1946 [Burkholderia pseudomallei
1710b]
gi|121599511|ref|YP_993094.1| type II secretion system protein [Burkholderia mallei SAVP1]
gi|124383879|ref|YP_001026129.1| hypothetical protein BMA10229_A0121 [Burkholderia mallei NCTC
10229]
gi|126450979|ref|YP_001080599.1| type II secretion system protein [Burkholderia mallei NCTC 10247]
gi|126452133|ref|YP_001066062.1| type II secretion system protein [Burkholderia pseudomallei 1106a]
gi|242317541|ref|ZP_04816557.1| type II secretion system protein [Burkholderia pseudomallei 1106b]
gi|254178228|ref|ZP_04884883.1| type II secretion system protein [Burkholderia mallei ATCC 10399]
gi|254206225|ref|ZP_04912577.1| type II secretion system protein [Burkholderia mallei JHU]
gi|254261112|ref|ZP_04952166.1| type II secretion system protein [Burkholderia pseudomallei 1710a]
gi|254297789|ref|ZP_04965242.1| type II secretion system protein [Burkholderia pseudomallei 406e]
gi|52426941|gb|AAU47534.1| membrane protein, putative [Burkholderia mallei ATCC 23344]
gi|76578444|gb|ABA47919.1| membrane protein, putative [Burkholderia pseudomallei 1710b]
gi|121228321|gb|ABM50839.1| type II secretion system protein [Burkholderia mallei SAVP1]
gi|124291899|gb|ABN01168.1| putative membrane protein [Burkholderia mallei NCTC 10229]
gi|126225775|gb|ABN89315.1| type II secretion system protein [Burkholderia pseudomallei 1106a]
gi|126243849|gb|ABO06942.1| type II secretion system protein [Burkholderia mallei NCTC 10247]
gi|147753668|gb|EDK60733.1| type II secretion system protein [Burkholderia mallei JHU]
gi|157807302|gb|EDO84472.1| type II secretion system protein [Burkholderia pseudomallei 406e]
gi|160699267|gb|EDP89237.1| type II secretion system protein [Burkholderia mallei ATCC 10399]
gi|242140780|gb|EES27182.1| type II secretion system protein [Burkholderia pseudomallei 1106b]
gi|254219801|gb|EET09185.1| type II secretion system protein [Burkholderia pseudomallei 1710a]
Length = 336
Score = 160 bits (404), Expect = 4e-37, Method: Composition-based stats.
Identities = 51/240 (21%), Positives = 100/240 (41%), Gaps = 8/240 (3%)
Query: 88 NLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQ 147
L +V + L G+ ++ I L R+ I + + P +
Sbjct: 99 RLGKQIVADEDRMLLEQCGYVDAHTRGIFLSARIACAIALPAAVAL-------VGGEPVR 151
Query: 148 LRVGAVILIGYV-GFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRR 206
+GA + + + GF P ++ R+ S+ P +D+L + G+S+DQ+++
Sbjct: 152 THLGAWVALSVIAGFMLPKTYVRRRAAARRQSVVDEMPLLVDMLRLLQGVGLSLDQSIQV 211
Query: 207 VAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGT 266
V D G LS E+ + + R+ + + + +R + LIQ D++G
Sbjct: 212 VTNDFRGMLPVLSSELGIAQRQFVAGRTREQSLQRLATSFDNEDLRAIVRLLIQVDKHGG 271
Query: 267 SIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
++ + L+ R R ++ L K+T MI+ LP L +V GP +L++ +
Sbjct: 272 AVQEPLKQFGDRLREVRRAMLRERIGRLTVKMTGVMILTLLPALFIVTAGPGMLAVTHAL 331
>gi|251767749|ref|ZP_02268267.2| type II secretion system protein [Burkholderia mallei PRL-20]
gi|254188637|ref|ZP_04895148.1| type II secretion system protein [Burkholderia pseudomallei Pasteur
52237]
gi|157936316|gb|EDO91986.1| type II secretion system protein [Burkholderia pseudomallei Pasteur
52237]
gi|243061818|gb|EES44004.1| type II secretion system protein [Burkholderia mallei PRL-20]
Length = 339
Score = 159 bits (403), Expect = 4e-37, Method: Composition-based stats.
Identities = 51/240 (21%), Positives = 100/240 (41%), Gaps = 8/240 (3%)
Query: 88 NLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQ 147
L +V + L G+ ++ I L R+ I + + P +
Sbjct: 102 RLGKQIVADEDRMLLEQCGYVDAHTRGIFLSARIACAIALPAAVAL-------VGGEPVR 154
Query: 148 LRVGAVILIGYV-GFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRR 206
+GA + + + GF P ++ R+ S+ P +D+L + G+S+DQ+++
Sbjct: 155 THLGAWVALSVIAGFMLPKTYVRRRAAARRQSVVDEMPLLVDMLRLLQGVGLSLDQSIQV 214
Query: 207 VAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGT 266
V D G LS E+ + + R+ + + + +R + LIQ D++G
Sbjct: 215 VTNDFRGMLPVLSSELGIAQRQFVAGRTREQSLQRLATSFDNEDLRAIVRLLIQVDKHGG 274
Query: 267 SIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
++ + L+ R R ++ L K+T MI+ LP L +V GP +L++ +
Sbjct: 275 AVQEPLKQFGDRLREVRRAMLRERIGRLTVKMTGVMILTLLPALFIVTAGPGMLAVTHAL 334
>gi|282865305|ref|ZP_06274357.1| type II secretion system protein [Streptomyces sp. ACTE]
gi|282559778|gb|EFB65328.1| type II secretion system protein [Streptomyces sp. ACTE]
Length = 295
Score = 159 bits (403), Expect = 4e-37, Method: Composition-based stats.
Identities = 58/220 (26%), Positives = 100/220 (45%), Gaps = 13/220 (5%)
Query: 96 ENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVIL 155
+ + KL AG +++ R V + I + + +L +L
Sbjct: 72 DKVRRKLDMAGNPGGMTVDRYAARRAVYTGLGGIAALSMLMNGQTVL----------AVL 121
Query: 156 IGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQS 215
G G+ V I + + +R+ I R PD LD+L + V +G+ QAL RVAE G
Sbjct: 122 FGVYGYFWTDVIIRSAISRRKDDIDRTLPDFLDVLAVVVSAGLGFRQALERVAEKYSG-- 179
Query: 216 VPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVL 275
P ++E+ +T+ ++ +R+ AF+ R + + V AL Q + G I D+L +
Sbjct: 180 -PWADELRITLRQMDMGVSRREAFDQLRKRNESEQVSMFVSALQQGEELGAPIVDTLIQI 238
Query: 276 VSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVII 315
++ R A +KAA PK T+ + F LP +++I
Sbjct: 239 ANDMRRTDAQNARRKAAKAVPKATLIVTSFMLPGTMILIA 278
>gi|237812071|ref|YP_002896522.1| type II secretion system protein [Burkholderia pseudomallei
MSHR346]
gi|237506289|gb|ACQ98607.1| type II secretion system protein [Burkholderia pseudomallei
MSHR346]
Length = 340
Score = 159 bits (403), Expect = 4e-37, Method: Composition-based stats.
Identities = 51/239 (21%), Positives = 95/239 (39%), Gaps = 6/239 (2%)
Query: 88 NLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQ 147
L +V + L G+ ++ I L R+ I + E
Sbjct: 103 RLGKQIVADEDRMLLEQCGYVDAHTRGIFLSARIACAIALPAAVAL------VGGETVRT 156
Query: 148 LRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRV 207
V L GF P +++ R+ S+ P +D+L + G+S+DQ+++ V
Sbjct: 157 HLGAWVALSVIAGFMLPKIYVRRRAAARRQSVVDEMPLLVDMLRLLQGVGLSLDQSIQVV 216
Query: 208 AEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTS 267
D G LS E+ + + R+ + + + +R + LIQ D++G +
Sbjct: 217 TNDFRGMLPVLSSELGIAQRQFVAGRTREQSLQRLATSFDNEDLRAIVRLLIQVDKHGGA 276
Query: 268 IGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
+ + L+ R R ++ L K+T MI+ LP L +V GP +L++ +
Sbjct: 277 VQEPLKQFGDRLREVRRAMLRERIGRLTVKMTGVMILTLLPALFIVTAGPGMLAVTHAL 335
>gi|254197742|ref|ZP_04904164.1| type II secretion system protein [Burkholderia pseudomallei S13]
gi|169654483|gb|EDS87176.1| type II secretion system protein [Burkholderia pseudomallei S13]
Length = 340
Score = 159 bits (403), Expect = 4e-37, Method: Composition-based stats.
Identities = 51/239 (21%), Positives = 95/239 (39%), Gaps = 6/239 (2%)
Query: 88 NLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQ 147
L +V + L G+ ++ I L R+ I + E
Sbjct: 103 RLGKQIVADEDRMLLEQCGYVDAHTRGIFLSARIACAIALPAAVAL------VGGETVRT 156
Query: 148 LRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRV 207
V L GF P +++ R+ S+ P +D+L + G+S+DQ+++ V
Sbjct: 157 HLGAWVALSVIAGFMLPKIYVRRRAAARRQSVVDEMPLLVDMLRLLQGVGLSLDQSIQVV 216
Query: 208 AEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTS 267
D G LS E+ + + R+ + + + +R + LIQ D++G +
Sbjct: 217 TNDFRGMLPVLSSELGIAQRQFVAGRTREQSLQRLATSFDNEDLRAIVRLLIQVDKHGGA 276
Query: 268 IGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
+ + L+ R R ++ L K+T MI+ LP L +V GP +L++ +
Sbjct: 277 VQEPLKQFGDRLREVRRAMLRERIGRLTVKMTGVMILTLLPALFIVTAGPGMLAVTHAL 335
>gi|319943385|ref|ZP_08017667.1| type II secretion system protein [Lautropia mirabilis ATCC 51599]
gi|319743200|gb|EFV95605.1| type II secretion system protein [Lautropia mirabilis ATCC 51599]
Length = 298
Score = 158 bits (401), Expect = 8e-37, Method: Composition-based stats.
Identities = 54/311 (17%), Positives = 123/311 (39%), Gaps = 20/311 (6%)
Query: 14 LAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLR 73
++ V++ +L+ + + L E+ ++Q+ L
Sbjct: 4 WISSVLPFVAVGALVLCIWLFMLAGSRAAA---------EVPKQQKNEYQDDPPRYWALL 54
Query: 74 TRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGII 133
+ +V L + + +LR G + + +++ ++
Sbjct: 55 GWLGHATTFWVTPLVSPTMR--RRLHEQLRRGGLEFALTPEQFVAGQVLGALLA------ 106
Query: 134 WIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLIC 193
+ + +L VG P W+ +L +R I +A P LD++ +
Sbjct: 107 -LALLVLAWLPHGLPSLPWCVLALVVGAFLPVSWLRDLGARRTRQIAKALPFYLDIITLA 165
Query: 194 VESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRN 253
+E+G ++ AL+ + G + P+SEE+ + ++ R + R ++ + N
Sbjct: 166 IEAGSNMTGALQHAVDK--GPTGPMSEELRRVLRDIRAGRTRAESLRALAERLRIPAISN 223
Query: 254 ATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILV 313
A++ +++ G+S+G LR + R+ER M+AE A K+ P++I P ++
Sbjct: 224 WVAAILTAEKQGSSLGPILRAQADQRRNERFMQAEAMALKAPVKMLFPLMICIFPCTFII 283
Query: 314 IIGPAILSIID 324
+ P + I++
Sbjct: 284 VFFPIAIRIME 294
>gi|226196329|ref|ZP_03791911.1| type II secretion system protein [Burkholderia pseudomallei
Pakistan 9]
gi|225931546|gb|EEH27551.1| type II secretion system protein [Burkholderia pseudomallei
Pakistan 9]
Length = 338
Score = 158 bits (401), Expect = 9e-37, Method: Composition-based stats.
Identities = 51/239 (21%), Positives = 94/239 (39%), Gaps = 6/239 (2%)
Query: 88 NLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQ 147
L +V + L G+ ++ I L R+ I + E
Sbjct: 101 RLGKQIVADEDRMLLEQCGYVDAHTRGIFLSARIACAIALPAAVAL------VGGETVRT 154
Query: 148 LRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRV 207
V L GF P ++ R+ S+ P +D+L + G+S+DQ+++ V
Sbjct: 155 HLGAWVALSVIAGFMLPKTYVRRRAAARRQSVVDEMPLLVDMLRLLQGVGLSLDQSIQVV 214
Query: 208 AEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTS 267
D G LS E+ + + R+ + + + +R + LIQ D++G +
Sbjct: 215 TNDFRGMLPVLSSELGIAQRQFVAGRTREQSLQRLATSFDNEDLRAIVRLLIQVDKHGGA 274
Query: 268 IGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
+ + L+ R R ++ L K+T MI+ LP L +V GP +L++ +
Sbjct: 275 VQEPLKQFGDRLREVRRAMLRERIGRLTVKMTGVMILTLLPALFIVTAGPGMLAVTHAL 333
>gi|126442067|ref|YP_001058811.1| type II secretion system protein [Burkholderia pseudomallei 668]
gi|134282402|ref|ZP_01769107.1| type II secretion system protein [Burkholderia pseudomallei 305]
gi|126221560|gb|ABN85066.1| type II secretion system protein [Burkholderia pseudomallei 668]
gi|134246440|gb|EBA46529.1| type II secretion system protein [Burkholderia pseudomallei 305]
Length = 340
Score = 158 bits (401), Expect = 9e-37, Method: Composition-based stats.
Identities = 51/239 (21%), Positives = 94/239 (39%), Gaps = 6/239 (2%)
Query: 88 NLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQ 147
L +V + L G+ ++ I L R+ I + E
Sbjct: 103 RLGKQIVADEDRMLLEQCGYVDAHTRGIFLSARIACAIALPAAVAL------VGGETVRT 156
Query: 148 LRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRV 207
V L GF P ++ R+ S+ P +D+L + G+S+DQ+++ V
Sbjct: 157 HLGAWVALSVIAGFMLPKTYVRRRAAARRQSVVDEMPLLVDMLRLLQGVGLSLDQSIQVV 216
Query: 208 AEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTS 267
D G LS E+ + + R+ + + + +R + LIQ D++G +
Sbjct: 217 TNDFRGMLPVLSSELGIAQRQFVAGRTREQSLQRLATSFDNEDLRAIVRLLIQVDKHGGA 276
Query: 268 IGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
+ + L+ R R ++ L K+T MI+ LP L +V GP +L++ +
Sbjct: 277 VQEPLKQFGDRLREVRRAMLRERIGRLTVKMTGVMILTLLPALFIVTAGPGMLAVTHAL 335
>gi|170724975|ref|YP_001759001.1| type II secretion system protein [Shewanella woodyi ATCC 51908]
gi|169810322|gb|ACA84906.1| type II secretion system protein [Shewanella woodyi ATCC 51908]
Length = 281
Score = 158 bits (400), Expect = 9e-37, Method: Composition-based stats.
Identities = 51/251 (20%), Positives = 108/251 (43%), Gaps = 9/251 (3%)
Query: 72 LRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILG 131
L T L K + E + + AGF + ++ + ++ ++L
Sbjct: 37 LETSQESGLEKLSKLVVRVGQEKREELEQQFIEAGFYDTRFARFYVPAKIGLALVIILLI 96
Query: 132 IIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLL 191
+I + +V + + P ++ + R P LD++
Sbjct: 97 VI--------SDMTLSNKVMIGAVAMVMTLIVPDSILAMRKKMLVKKTSRQLPYMLDMMS 148
Query: 192 ICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCV 251
+CV++G++++ AL +AE++ L + T A+ S + + A R V
Sbjct: 149 VCVQTGMTVEAALAYLAEELKAFDKDLCFHIKKT-ADTSRITGLEKALLELSERIPTPEV 207
Query: 252 RNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLI 311
R+ + LIQ+ +YGTSI + L L + R +++ E+ L K++VP+I+F + ++
Sbjct: 208 RSFSLTLIQNIQYGTSIANVLADLAEDMRQMQVLAMEESIGKLAAKMSVPLILFIMFPIV 267
Query: 312 LVIIGPAILSI 322
++I+ P + +
Sbjct: 268 VLILAPGFMQL 278
>gi|53719505|ref|YP_108491.1| putative outer-membrane protein [Burkholderia pseudomallei K96243]
gi|52209919|emb|CAH35891.1| putative outer-membrane protein [Burkholderia pseudomallei K96243]
Length = 341
Score = 158 bits (400), Expect = 1e-36, Method: Composition-based stats.
Identities = 51/239 (21%), Positives = 94/239 (39%), Gaps = 6/239 (2%)
Query: 88 NLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQ 147
L +V + L G+ ++ I L R+ I + E
Sbjct: 104 RLGKQIVADEDRMLLEQCGYVDAHTRGIFLSARIACAIALPAAVAL------VGGETVRT 157
Query: 148 LRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRV 207
V L GF P ++ R+ S+ P +D+L + G+S+DQ+++ V
Sbjct: 158 HLGAWVALSVIAGFMLPKTYVRRRAAARRQSVVDEMPLLVDMLRLLQGVGLSLDQSIQVV 217
Query: 208 AEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTS 267
D G LS E+ + + R+ + + + +R + LIQ D++G +
Sbjct: 218 TNDFRGMLPVLSSELGIAQRQFVAGRTREQSLQRLATSFDNEDLRAIVRLLIQVDKHGGA 277
Query: 268 IGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
+ + L+ R R ++ L K+T MI+ LP L +V GP +L++ +
Sbjct: 278 VQEPLKQFGDRLREVRRAMLRERIGRLTVKMTGVMILTLLPALFIVTAGPGMLAVTHAL 336
>gi|37676258|ref|NP_936654.1| Flp pilus assembly protein TadC [Vibrio vulnificus YJ016]
gi|37200799|dbj|BAC96624.1| Flp pilus assembly protein TadC [Vibrio vulnificus YJ016]
Length = 292
Score = 158 bits (400), Expect = 1e-36, Method: Composition-based stats.
Identities = 61/248 (24%), Positives = 118/248 (47%), Gaps = 9/248 (3%)
Query: 58 QQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILL 117
+ S++K S++ + + +F K+ + + KL AAG S++
Sbjct: 33 RAEISVRKIIGSTKEQQKRDDLFLSFFKRFSFNK----DETKKKLVAAGVYSDFIAQTYY 88
Query: 118 VVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQS 177
+ +++ P+ IL +++ + L L + ++I VG P ++IS+
Sbjct: 89 LFKII-PLFLTILISVYLMSIEVLDTNELILTIALGMVIFVVG---PDMYISSRANSITR 144
Query: 178 SIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQV 237
I P LDL+ +CV +G++I+ L +A ++ L+ + +T+ + S +
Sbjct: 145 HISSRLPFLLDLMNVCVHTGMTIEATLEYLANELQTVDKYLAFTVNVTV-QRSKVIGINK 203
Query: 238 AFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPK 297
A E FY ++ LIQS ++G+S+G L L ++ R +ME E+K LG K
Sbjct: 204 ALEEFYEMVPSSEAQSFVMTLIQSLQFGSSVGQVLGTLATDIRQINMMELEEKIGKLGAK 263
Query: 298 LTVPMIIF 305
+++PMI+F
Sbjct: 264 MSIPMIVF 271
>gi|119773848|ref|YP_926588.1| putative type II secretion system protein F [Shewanella amazonensis
SB2B]
gi|119766348|gb|ABL98918.1| putative type II secretion system protein F [Shewanella amazonensis
SB2B]
Length = 287
Score = 158 bits (400), Expect = 1e-36, Method: Composition-based stats.
Identities = 61/231 (26%), Positives = 109/231 (47%), Gaps = 9/231 (3%)
Query: 96 ENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVIL 155
E I KL+ +G + +R++ + + + + D+L ++L
Sbjct: 66 ERIAKKLQVSGLSYLMTAEQYFAIRILSTLFATFIVWLGCWMLDELSAN-------YLLL 118
Query: 156 IGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQS 215
G+ P + +++L + RQ I + P LD L + +E+G+++ A+ + E G
Sbjct: 119 AAIAGYFLPMLTLNDLRRTRQEQIVKVLPVYLDYLTMAIEAGLNMSAAIAQAVE--RGPD 176
Query: 216 VPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVL 275
PL E I ++ +R AF N +R Q+ + + AL Q++R G S+G +LR+
Sbjct: 177 GPLKIEFEKVIRDMRAGISRAQAFRNMADRVQISELNSLVSALAQAERTGASLGYTLRIQ 236
Query: 276 VSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
+ R ER AEKKA KL P+I+F PV L+++ P + + M
Sbjct: 237 ADQRRVERFQRAEKKAMEAPIKLMFPLIMFIFPVTFLILLFPILSKFLFEM 287
>gi|198284409|ref|YP_002220730.1| type II secretion system protein [Acidithiobacillus ferrooxidans
ATCC 53993]
gi|218665047|ref|YP_002427077.1| tight adherence protein TadC [Acidithiobacillus ferrooxidans ATCC
23270]
gi|198248930|gb|ACH84523.1| type II secretion system protein [Acidithiobacillus ferrooxidans
ATCC 53993]
gi|218517260|gb|ACK77846.1| tight adherence protein TadC [Acidithiobacillus ferrooxidans ATCC
23270]
Length = 312
Score = 158 bits (399), Expect = 2e-36, Method: Composition-based stats.
Identities = 62/311 (19%), Positives = 127/311 (40%), Gaps = 9/311 (2%)
Query: 17 AITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRD 76
A+ TA+++ S+ AV++ R+ +A R + + S +
Sbjct: 6 ALLTALAVASIALAVLLGVFFW---AYRLVMIARARSAMDRVAPKLEAGSEPSEVAAQME 62
Query: 77 SKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLIL-GIIWI 135
L N + +L L AG+R + +I +R ++P++ +++ G+
Sbjct: 63 RGPLANV--RWDLLDRWRSGEDARLLLRAGYRRPAAPSIFNTIRFLLPVVLVVVTGMTEH 120
Query: 136 FGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVE 195
+L+ F + + AV VG+ P + + + R ++ P +D+L +
Sbjct: 121 LLAPHMLKLTFWMSLLAV---AIVGYLLPKFILESKAKSRGDAVNAEIPFFVDMLALLQG 177
Query: 196 SGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNAT 255
G+S++Q+L +A+ L+ EM ++ R A + +
Sbjct: 178 VGLSLEQSLASLAQTSEAGIPLLAGEMREMGKHIAIGRPRVEAMQKLAEQLGDPDFEELV 237
Query: 256 QALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVII 315
L Q +R+G + LR + +R M ++ L K+T M + LP L+L+
Sbjct: 238 NMLRQIERFGGDVAQPLRDFAGRLQEKRQMALRERVGKLNVKMTAVMTLTMLPALLLITA 297
Query: 316 GPAILSIIDTM 326
GPA+L+++
Sbjct: 298 GPAVLALLRFF 308
>gi|113867007|ref|YP_725496.1| flp pilus assembly protein TadC [Ralstonia eutropha H16]
gi|113525783|emb|CAJ92128.1| flp pilus assembly protein TadC [Ralstonia eutropha H16]
Length = 293
Score = 157 bits (398), Expect = 2e-36, Method: Composition-based stats.
Identities = 57/225 (25%), Positives = 100/225 (44%), Gaps = 9/225 (4%)
Query: 100 NKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYV 159
+LR G + L + +V + F +L I + G
Sbjct: 74 EQLRLTGMSFLMTARQFLSLSIVSALAFCLLAGIAMLGLGVFSPLLLLAASAL------- 126
Query: 160 GFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLS 219
GF P +W+ ++ ++ + R P LD L + VE+G++I+ AL + E G PL
Sbjct: 127 GFFYPRIWLRDVRKRNLLQVTRHLPVFLDFLTLSVEAGLNINGALLQAVEK--GPEGPLR 184
Query: 220 EEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSET 279
E + +L +R A +R ++ V N A+IQ++R G+ + +LR +
Sbjct: 185 REFEHVLRDLKSGLSRADALRRMDDRLRVKEVTNFVGAVIQAERMGSGLAATLRFQSEQR 244
Query: 280 RSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIID 324
R+ER AEK+A KL P+++F PV +V+ P ++ +
Sbjct: 245 RTERFQRAEKQAMEAPVKLIFPLVVFIFPVTFIVLGFPIVMKFMQ 289
>gi|237798377|ref|ZP_04586838.1| type II secretion system protein [Pseudomonas syringae pv. oryzae
str. 1_6]
gi|331021229|gb|EGI01286.1| type II secretion system protein [Pseudomonas syringae pv. oryzae
str. 1_6]
Length = 295
Score = 157 bits (398), Expect = 2e-36, Method: Composition-based stats.
Identities = 55/276 (19%), Positives = 113/276 (40%), Gaps = 6/276 (2%)
Query: 55 LRKQQITSLQKDSASSRLRTRDSKSLRNFVK--KLNLKAILVDENIVNKLRAAGFRSEYS 112
R++ + + +R SL + ++ ++I +D L G+R
Sbjct: 23 RRRRNERLVAQRLRGKVVRESRIGSLLRLLGDTRIGQRSISLDSETQVLLNRIGWRRARK 82
Query: 113 LNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLV 172
++ ++ VPI + + + + K +E P + A + G+ P ++ +
Sbjct: 83 RSLFAACQIGVPIGLMCVVALGQLLFFKNIEQP----LIAPVFALGAGYLLPKRALAAVA 138
Query: 173 QKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFL 232
++RQ I + LL I ESG++++QALR ++ + LSEE+ + +A +
Sbjct: 139 KRRQKQIVVEISTFIPLLRILFESGMAVEQALRVLSNEGKDLLPVLSEEIRVVLARVDSG 198
Query: 233 PNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAA 292
+D + + L Q G SL L RL ++ +
Sbjct: 199 LELGEELRKMAALLDVDELSDTCIILNQLIHQGGGALKSLLTLKQLIDDRRLTRLQEYIS 258
Query: 293 SLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMKD 328
L K+++ M++F P L++V+ GP ++I +
Sbjct: 259 KLSAKMSMVMMVFLFPALLIVLAGPGFIAISRALGG 294
>gi|221066735|ref|ZP_03542840.1| type II secretion system protein [Comamonas testosteroni KF-1]
gi|220711758|gb|EED67126.1| type II secretion system protein [Comamonas testosteroni KF-1]
Length = 338
Score = 157 bits (398), Expect = 2e-36, Method: Composition-based stats.
Identities = 44/241 (18%), Positives = 101/241 (41%), Gaps = 7/241 (2%)
Query: 88 NLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQ 147
+ L+ + L AG ++ + R+++ + +L I+ +
Sbjct: 101 GIAKSLLADEDRKLLDQAGISLRNGGSVFVASRMILAVAMPLLAILVF-------QPRGI 153
Query: 148 LRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRV 207
+ G P +S +R+ + P +DLL + G+SIDQ+L+ +
Sbjct: 154 HLLMYGFFGFGGGLMLPKWLVSYKSSQRREQVVEELPLFVDLLRLLQGVGLSIDQSLQIL 213
Query: 208 AEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTS 267
+++ G LS E+ + + +R + + + + + L+Q DR+G +
Sbjct: 214 SQEFGSVLPVLSSELAMANQLYASGRSRDQSLQRLTHLSDDQDMTAVVNLLVQVDRHGGA 273
Query: 268 IGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
+ L+ R +R ++K ++ K+T M++ LP L+++ GP +++I ++
Sbjct: 274 VQGPLQDFGIRLREKRQARFKEKIGAITVKMTGVMVLTLLPALMVITAGPGFMAVIRSLS 333
Query: 328 D 328
Sbjct: 334 S 334
>gi|326424177|ref|NP_762076.2| type II/IV secretion system protein TadC [Vibrio vulnificus CMCP6]
gi|319999560|gb|AAO07066.2| Type II/IV secretion system protein TadC, associated with Flp pilus
assembly [Vibrio vulnificus CMCP6]
Length = 292
Score = 157 bits (398), Expect = 2e-36, Method: Composition-based stats.
Identities = 61/248 (24%), Positives = 118/248 (47%), Gaps = 9/248 (3%)
Query: 58 QQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILL 117
+ S++K S++ + + +F K+ + + KL AAG S++
Sbjct: 33 RAEISVRKIIGSTKEQKKRDDLFLSFFKRFSFNK----DETKKKLVAAGVYSDFIAQTYY 88
Query: 118 VVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQS 177
+ +++ P+ IL +++ L L + ++I VG P ++IS+
Sbjct: 89 LFKII-PLFLTILISVYLMSIKVLDTNELILTIALGMVIFVVG---PDMYISSRANSITR 144
Query: 178 SIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQV 237
I P LDL+ +CV +G++I+ L +A+++ L+ + +T+ + S +
Sbjct: 145 HISSRLPFLLDLMNVCVHTGMTIEATLEYLAKELQTVDKYLAFTVNVTV-QRSKVIGINK 203
Query: 238 AFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPK 297
A E FY ++ LIQS ++G+S+G L L ++ R +ME E+K LG K
Sbjct: 204 ALEEFYEMVPSSEAQSFVMTLIQSLQFGSSVGQVLGTLATDIRQINMMELEEKIGKLGAK 263
Query: 298 LTVPMIIF 305
+++PMI+F
Sbjct: 264 MSIPMIVF 271
>gi|84385679|ref|ZP_00988710.1| hypothetical Flp pilus assembly protein TadC [Vibrio splendidus
12B01]
gi|84379659|gb|EAP96511.1| hypothetical Flp pilus assembly protein TadC [Vibrio splendidus
12B01]
Length = 280
Score = 157 bits (397), Expect = 2e-36, Method: Composition-based stats.
Identities = 59/306 (19%), Positives = 129/306 (42%), Gaps = 29/306 (9%)
Query: 18 ITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDS 77
+ S+ L ++++ + S E+R K VA+ S+R +R +
Sbjct: 1 MMLLASLIVLFFSLLFLIIDSIRKEQRHKKVALYI-------------GDNSARAPSRVN 47
Query: 78 KSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFG 137
+ F K+ + K+ AG+ + +L+V + + G
Sbjct: 48 RFFVRFGKEHR-------HELEQKMIEAGYYNTDWAKFYFPAKLLV--------LALVSG 92
Query: 138 YDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESG 197
L + ++ VI P + + S P LD++ +CV++G
Sbjct: 93 LVLLGDMTSTNKLLVVIFSLIGVIVVPDTMLQMRRKMLISRTSAQLPYLLDMMSVCVQTG 152
Query: 198 ISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQA 257
++I+ AL + +++ L ++ T ++ + + + A + R VR+
Sbjct: 153 MTIEAALVYLGKELAEFDSDLCYQIKRT-SDSAKIHGLEKALNDLSERIPTPPVRSFVLT 211
Query: 258 LIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGP 317
+IQ+ +YGTS+ L L + R +++ E+K L K++VP+I+F + ++++I+ P
Sbjct: 212 IIQNLQYGTSVASVLSDLAEDMRKVQILTVEEKVGKLSAKMSVPLILFIMFPIVILILAP 271
Query: 318 AILSII 323
+I+ +
Sbjct: 272 SIMQMT 277
>gi|148975967|ref|ZP_01812756.1| hypothetical Flp pilus assembly protein TadC [Vibrionales bacterium
SWAT-3]
gi|145964712|gb|EDK29965.1| hypothetical Flp pilus assembly protein TadC [Vibrionales bacterium
SWAT-3]
Length = 280
Score = 157 bits (397), Expect = 2e-36, Method: Composition-based stats.
Identities = 52/306 (16%), Positives = 126/306 (41%), Gaps = 29/306 (9%)
Query: 18 ITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDS 77
+ S+ L ++++ + S ++R K VA + +
Sbjct: 1 MMILASLIVLFFSLLFLIIESVRADQRQKKVA-----------------AYIGGDAIKPP 43
Query: 78 KSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFG 137
+ F + + + KL AG+ + +++V + + G
Sbjct: 44 SRMNRFFVRFGKEHR---HELEQKLIEAGYYNTEWAKFYFPAKVLVLGL--------VSG 92
Query: 138 YDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESG 197
L + ++ VI+ P + + S P LD++ +CV++G
Sbjct: 93 LVLLGDMTSTNKLLVVIVSLIAVIVVPDTLLQMRRKMLISKTSAQLPYLLDMMSVCVQTG 152
Query: 198 ISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQA 257
++I+ +L + +++ L ++ T ++ + + + A + R +R+
Sbjct: 153 MTIEASLVYLGKELAEFDSDLCYQIKRT-SDSAKIHGVEKALNDLTERIPTPAIRSFVLT 211
Query: 258 LIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGP 317
+IQ+ +YGTS+ +L L + R +++ E+K L K++VP+I+F + ++++I+ P
Sbjct: 212 IIQNLQYGTSVAQTLSDLAEDMRKVQILTVEEKVGKLSAKMSVPLILFIMFPIVILILAP 271
Query: 318 AILSII 323
+I+ +
Sbjct: 272 SIMQMT 277
>gi|260778157|ref|ZP_05887050.1| type II/IV secretion system protein TadC associated with Flp pilus
assembly [Vibrio coralliilyticus ATCC BAA-450]
gi|260606170|gb|EEX32455.1| type II/IV secretion system protein TadC associated with Flp pilus
assembly [Vibrio coralliilyticus ATCC BAA-450]
Length = 284
Score = 157 bits (397), Expect = 3e-36, Method: Composition-based stats.
Identities = 54/236 (22%), Positives = 115/236 (48%), Gaps = 6/236 (2%)
Query: 91 AILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRV 150
+ +L GF ++ +++R V+ L +W F +
Sbjct: 52 RWKSNPARQKQLALIGFSQNHAETQFVLIRFVL---MLCGAGLWHFSRSLGWS---AADI 105
Query: 151 GAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAED 210
I + A + V + + I + PDALDL+++CV SG++++ R V E+
Sbjct: 106 AQDIAVAIACGIAVDRLLEWRVNQIRQEISKVAPDALDLMVVCVASGLTLENTFRVVGEE 165
Query: 211 IGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGD 270
+ S L+ E LT E+S L + Q A +N R ++ + N + Q+ ++GT +
Sbjct: 166 MTSVSPALAREWALTATEMSVLDSPQQALQNLDQRLELPDINNMVVTMSQALQFGTPLSQ 225
Query: 271 SLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
+L ++ S++R +L++ E+ + K++ P+++F + ++++I+ P +LS+ +T+
Sbjct: 226 ALSLIASDSRQYQLLDLEEWVGKIPAKMSFPLVVFIMLPVVVMIVAPVVLSLFNTL 281
>gi|237653361|ref|YP_002889675.1| type II secretion system protein [Thauera sp. MZ1T]
gi|237624608|gb|ACR01298.1| type II secretion system protein [Thauera sp. MZ1T]
Length = 301
Score = 156 bits (396), Expect = 3e-36, Method: Composition-based stats.
Identities = 66/281 (23%), Positives = 119/281 (42%), Gaps = 11/281 (3%)
Query: 45 MKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRA 104
+ ++A +R + T L RL ++ + + V L + + +LR
Sbjct: 30 VAALARSVSAVRPEDRTWLDTPPRFLRLLWWPTRWIAHLVAPLLPARL--QARLAVRLRL 87
Query: 105 AGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAP 164
AG S LL R+ V + L G+ + P A LI +
Sbjct: 88 AGLDYTLSPAQLLAHRVAVGLCGLAAGLGCAHAWALPPALPALAGATAGTLIAWS----- 142
Query: 165 SVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLL 224
W+ + ++ R+ + + P LDL+ +CVE+G+++ AL++ A G + PL EE+
Sbjct: 143 --WLDDRIRCRRRLMLKQLPFVLDLITLCVEAGLNLTGALQQAAAK--GPAGPLGEELHR 198
Query: 225 TIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERL 284
+ ++ +R A F +R + N +IQ++ G S+G LR + R+ER
Sbjct: 199 VLRDVRAGKSRADALRGFADRIGEPAIANLVSTVIQAENMGMSLGPMLRAQGEQRRAERF 258
Query: 285 MEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDT 325
AEK A K+ +P+I P +V+ P + +
Sbjct: 259 ARAEKAAMEAPVKMLLPLIACIFPCTFIVLGFPIAVKFMTM 299
>gi|91777214|ref|YP_552422.1| putative type II secretion system protein F [Burkholderia
xenovorans LB400]
gi|91689874|gb|ABE33072.1| Putative type II secretion system protein F [Burkholderia
xenovorans LB400]
Length = 293
Score = 156 bits (395), Expect = 4e-36, Method: Composition-based stats.
Identities = 54/197 (27%), Positives = 96/197 (48%), Gaps = 2/197 (1%)
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
+I I+ L+ V +IL+ +G+ P +W ++ ++R + I R P L
Sbjct: 95 IIASILASLVTLLLMLALGMFSVLILILVAALGYFYPRIWTRDVRRRRVAQILRHLPIYL 154
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQ 247
D L + VE+G++I+ A+++ E G PL E+ + +L NR A +R +
Sbjct: 155 DFLTLAVEAGLNINGAIQKAVEK--GPEGPLRRELEHVLRDLKSGLNRTEALRRLDDRLR 212
Query: 248 MDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFL 307
+ V N ++Q++R G+ + SLR + RSER AEK+A KL P++ F
Sbjct: 213 IKEVTNLVGTVVQAERMGSGLAKSLRFQSEQRRSERFQRAEKQAMEAPVKLVFPLLFFIF 272
Query: 308 PVLILVIIGPAILSIID 324
P+ +V+ P + +
Sbjct: 273 PITFIVLGFPIAMKFVQ 289
>gi|188592036|ref|YP_001796634.1| type II secretion system protein [Cupriavidus taiwanensis LMG
19424]
gi|170938410|emb|CAP63397.1| Type II secretion system protein [Cupriavidus taiwanensis LMG
19424]
Length = 356
Score = 156 bits (395), Expect = 4e-36, Method: Composition-based stats.
Identities = 48/241 (19%), Positives = 96/241 (39%), Gaps = 6/241 (2%)
Query: 88 NLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQ 147
L +V L G+ + + V+RL +P+ L ++W G
Sbjct: 117 RLGRAVVTPEDQQLLEQCGWYGLQARVVFGVLRLGLPMALSALAMLWHLGASGF------ 170
Query: 148 LRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRV 207
V V + AP ++ +R + P +D+L + G+SIDQ+L+ +
Sbjct: 171 AVVAWGFGTFAVAYLAPKWYLRRRAAERLRRVDDELPVLIDMLRLLQGVGLSIDQSLQVI 230
Query: 208 AEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTS 267
+ G L E+ + + +R+ + +++ L Q D++G +
Sbjct: 231 VAEFGSMLRVLGPELARANQQFASGRSREQTLLRIGRLFDSEDLKSLITLLTQVDKHGGA 290
Query: 268 IGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
+ + LR + R + + L K+T M++ LPVL+++ GP L +I +
Sbjct: 291 VQEPLRQFGLRMQEARKSRMKDEIGRLTVKMTAVMVVSLLPVLLILTAGPGFLGVIRMLA 350
Query: 328 D 328
+
Sbjct: 351 N 351
>gi|300856045|ref|YP_003781029.1| putative type II secretion system protein [Clostridium ljungdahlii
DSM 13528]
gi|300436160|gb|ADK15927.1| putative type II secretion system protein [Clostridium ljungdahlii
DSM 13528]
Length = 306
Score = 156 bits (395), Expect = 4e-36, Method: Composition-based stats.
Identities = 64/282 (22%), Positives = 128/282 (45%), Gaps = 9/282 (3%)
Query: 45 MKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRA 104
+K E L K + ++ + S R+ ++ + ++ +V + KL
Sbjct: 31 IKKRFTELNELDKLKEEEIENKTFSERMIMPFYENFSKVLLRITPHQKIVM--LNKKLER 88
Query: 105 AGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAP 164
AG ++ ++ + ++ +IF + + + D + + VI I
Sbjct: 89 AGVLKNSTVQKWILKKSMIILIFSTILGVLVLMVDFNIMKVIVFTILVVITINVFF---- 144
Query: 165 SVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLL 224
+ ++S +Q R++ I + P LDL+ + VE+G+S D A+ RV +I G L +E
Sbjct: 145 NFYLSRRIQNRKNKILKDLPYTLDLITVSVEAGLSFDGAIARVISNIRG---ELCDEFAK 201
Query: 225 TIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERL 284
++ E++ R+ A +N R + + +LIQ+D G S+ LR+ + R R
Sbjct: 202 SLKEITMGIERKAALKNMSERCDVKELSMFISSLIQADELGVSLSKVLRIESANLREHRR 261
Query: 285 MEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
+ +KA K+ P+I F P + ++I+GPA++ +I
Sbjct: 262 QVSREKAMKAPIKMLFPLIFFIFPTIFIIILGPAVIRMITIF 303
>gi|251791986|ref|YP_003006706.1| TadC [Aggregatibacter aphrophilus NJ8700]
gi|247533373|gb|ACS96619.1| TadC [Aggregatibacter aphrophilus NJ8700]
Length = 288
Score = 156 bits (395), Expect = 4e-36, Method: Composition-based stats.
Identities = 55/297 (18%), Positives = 135/297 (45%), Gaps = 25/297 (8%)
Query: 27 LIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKK 86
I+ ++I L R K + +L ++ + + + + + +
Sbjct: 13 AIFGIIILFTA---LSARKKFLHSREVVLGERPKDTDEDEDNKGKTKQQ----------- 58
Query: 87 LNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPF 146
+ L+ +L++ N + L+ G + +++ + I+ ++ G +++ +
Sbjct: 59 IELELLLINNNPI--LKTLGIIDKN-------IKVKLLIMIVLCGACYLYSLNDSNPNSS 109
Query: 147 QLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRR 206
L + + ++ V P ++++++ + I +DL+ + V++G+SI+ AL++
Sbjct: 110 SLLISFLTIL-VVTIIIPGFLVNSILKSKIKKIMNDLAGFIDLVAVNVQTGVSIEAALKQ 168
Query: 207 VAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGT 266
VA D + L+ ML I + S + A ++ +R + QS +G+
Sbjct: 169 VATDFKTLNPDLTYVMLRIIRK-SEITGMSQALQDLSISLPTTEIRMFCTVMQQSLNFGS 227
Query: 267 SIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSII 323
SI L L S+ R +L+ E+K +L K+++P+I+F + +I++I+ P ++ +
Sbjct: 228 SIYHQLIQLSSDIRELQLLTIEEKLGTLAAKMSIPLILFIMFPIIILILAPGVMRVF 284
>gi|116671473|ref|YP_832406.1| type II secretion system protein [Arthrobacter sp. FB24]
gi|116611582|gb|ABK04306.1| type II secretion system protein [Arthrobacter sp. FB24]
Length = 292
Score = 156 bits (394), Expect = 5e-36, Method: Composition-based stats.
Identities = 63/252 (25%), Positives = 123/252 (48%), Gaps = 11/252 (4%)
Query: 76 DSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWI 135
+ L ++L + + L AG S L LLV + + ++ +L ++
Sbjct: 52 QNMDLERMARRLTPSGY--EAKLDRLLALAGRPSSMPLPRLLVAKPALALVVAVLMMLM- 108
Query: 136 FGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVE 195
L + + + + P + I + Q+RQ I+ P+ LD +LI VE
Sbjct: 109 -----LSRNGSAQMILLAVFATGLAYFVPDLLIYSRGQERQKKIQLELPNTLDQMLIAVE 163
Query: 196 SGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNAT 255
+G+ + A+ R ++ G PL+EE++ T+ ++ +R+ ++ R+ + +R
Sbjct: 164 AGLGFESAMARAGQNGKG---PLAEELIRTLQDMQVGRSRRDSYLALAERSNVQDLRTFV 220
Query: 256 QALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVII 315
+A++Q+D YG +I L+ E R +R AE+KA L + P+++F PV+ +VI+
Sbjct: 221 RAVVQADTYGIAIAKVLKAQAKEMRVKRRQRAEQKAMKLPVLVLFPLLLFIFPVIFIVIL 280
Query: 316 GPAILSIIDTMK 327
GPA+++II+
Sbjct: 281 GPAVINIIEAFS 292
>gi|312882149|ref|ZP_07741898.1| hypothetical protein VIBC2010_06159 [Vibrio caribbenthicus ATCC
BAA-2122]
gi|309370195|gb|EFP97698.1| hypothetical protein VIBC2010_06159 [Vibrio caribbenthicus ATCC
BAA-2122]
Length = 280
Score = 156 bits (394), Expect = 5e-36, Method: Composition-based stats.
Identities = 54/269 (20%), Positives = 120/269 (44%), Gaps = 10/269 (3%)
Query: 59 QITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDE-NIVNKLRAAGFRSEYSLNILL 117
+ Q++ + L S + V + ++ + KL AG +
Sbjct: 21 SLRMTQRNKKVALLIGTQSSRTPSRVNRFFVRFGKEHRHELEKKLIDAGIYNRELAKFYF 80
Query: 118 VVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQS 177
+L++ I+ L +I + QL G + LIG + P + +
Sbjct: 81 PAKLMILIVVTSLILI------SDMTMQNQLMFGILNLIGVI--LLPDTLLHIKGKLLIG 132
Query: 178 SIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQV 237
I P LD++ +C+++G++I+ +L + E++ L ++ T ++ + + +
Sbjct: 133 KISAQLPYLLDMMAVCIQTGMTIEASLVYLGEELEEFDKDLCYQIQRT-SDSAKIHGLEK 191
Query: 238 AFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPK 297
A +F +R VR+ +IQ+ +YGTS+ L L + R +++ E+K L K
Sbjct: 192 ALNDFADRVPTTAVRSFVLTIIQNLQYGTSVAQVLGDLSEDMRKVQILTVEEKVGKLSAK 251
Query: 298 LTVPMIIFFLPVLILVIIGPAILSIIDTM 326
+++P+I+ + ++++I+ P I+ ++ M
Sbjct: 252 MSLPLILLIMFPIVVLILAPGIMQMMINM 280
>gi|73539235|ref|YP_299602.1| type II secretion system protein [Ralstonia eutropha JMP134]
gi|72122572|gb|AAZ64758.1| type II secretion system protein [Ralstonia eutropha JMP134]
Length = 344
Score = 155 bits (393), Expect = 7e-36, Method: Composition-based stats.
Identities = 56/267 (20%), Positives = 110/267 (41%), Gaps = 7/267 (2%)
Query: 62 SLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRL 121
+ +RL R ++ +A++ E I+ L G+ + I +RL
Sbjct: 80 AGSAAQIGARLGGRVDAHWLRWLDSPLGRAVVTAEEILL-LEQCGWHGLRARAIFGALRL 138
Query: 122 VVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKR 181
VP++ + W G + V + AP ++ Q R S++
Sbjct: 139 NVPVLLALCAAAWHVGQG------LAASLAWGFATFAVSYLAPKHYLRRRAQARLRSVED 192
Query: 182 AWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFEN 241
P +D+L + G+SIDQ+L+ + + GG L E+ L+ + + +R+
Sbjct: 193 ELPIVIDMLRLLQGVGLSIDQSLQIIVSEFGGMLRVLGPELALSNQQFASGRSREQTLLR 252
Query: 242 FYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVP 301
+ +++ L Q DR+G ++ + LR+ + R + + L K+T
Sbjct: 253 IGRLFDSENLKSLITLLTQVDRHGGAVQEPLRLFGQRMQEARKSRMKDEIGRLTVKMTAV 312
Query: 302 MIIFFLPVLILVIIGPAILSIIDTMKD 328
M++ LPVL+++ GP L +I +
Sbjct: 313 MVVSMLPVLLIITAGPGFLGVIRMLAH 339
>gi|116694144|ref|YP_728355.1| flp pilus assembly protein TadC [Ralstonia eutropha H16]
gi|113528643|emb|CAJ94990.1| flp pilus assembly protein TadC [Ralstonia eutropha H16]
Length = 345
Score = 155 bits (393), Expect = 7e-36, Method: Composition-based stats.
Identities = 50/270 (18%), Positives = 100/270 (37%), Gaps = 6/270 (2%)
Query: 59 QITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLV 118
Q + ++L R + + L +V L G+ S + V
Sbjct: 77 QGRGGAATAIGAQLGARVGERINAHWLDSRLGRAVVTPEDQQLLEQCGWYGPQSRMLFGV 136
Query: 119 VRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSS 178
+RL +P + ++W G V + + AP + R
Sbjct: 137 LRLGLPSALALAAMLWHVGAGAF------AIVAWGFGTFALAYLAPKWHLRRRAAARLRM 190
Query: 179 IKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVA 238
+ P +D+L + G+SIDQ+L+ + + G L E+ + + +R+
Sbjct: 191 VDDELPVLIDMLRLLQGVGLSIDQSLQVIVAEFGSMLRVLGPELARANQQFASGRSREQT 250
Query: 239 FENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKL 298
+ +++ L Q D++G ++ + LR + R + + L K+
Sbjct: 251 LLRIGRLFDSEDLKSLITLLTQVDKHGGAVQEPLRQFGLRMQEARKSRLKDEIGRLTVKM 310
Query: 299 TVPMIIFFLPVLILVIIGPAILSIIDTMKD 328
T M++ LPVL+++ GP L +I +
Sbjct: 311 TAVMVVSLLPVLLILTAGPGFLGVIRMLAH 340
>gi|299532823|ref|ZP_07046210.1| type II secretion system protein [Comamonas testosteroni S44]
gi|298719047|gb|EFI60017.1| type II secretion system protein [Comamonas testosteroni S44]
Length = 311
Score = 155 bits (393), Expect = 8e-36, Method: Composition-based stats.
Identities = 63/241 (26%), Positives = 112/241 (46%), Gaps = 8/241 (3%)
Query: 88 NLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQ 147
+L LV + L G+ S + L+ R VV ++ ++L G + L Y
Sbjct: 76 SLGKALVAQEDRILLGKCGWGSTRAQLQYLIARCVVSVLLVLLAAFVFSGSKQFLLY--- 132
Query: 148 LRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRV 207
+ +GF P + ++ +R++S+ R P +DLL + +G+S+DQ L+ +
Sbjct: 133 -----LFAAFAIGFLLPKWVLRSVAGRRRASVARELPLLVDLLGLLQGTGMSLDQTLQVI 187
Query: 208 AEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTS 267
D G LS E+ L + S R+ +F Q D + N T +IQ DRYG +
Sbjct: 188 GSDFGNVMPVLSREIKLANQQYSRGSTRERSFGRMSEVYQNDNLANLTSLMIQIDRYGGA 247
Query: 268 IGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
+ + LR+ R +R + ++ + K+T M++ LP LI++ GP L++I +
Sbjct: 248 VQEPLRIFGERLREQRKAKMKELIGKISVKMTAVMVVTLLPALIIITAGPGFLAVIRALG 307
Query: 328 D 328
Sbjct: 308 G 308
>gi|239979681|ref|ZP_04702205.1| hypothetical protein SalbJ_09602 [Streptomyces albus J1074]
Length = 309
Score = 155 bits (392), Expect = 8e-36, Method: Composition-based stats.
Identities = 59/226 (26%), Positives = 102/226 (45%), Gaps = 13/226 (5%)
Query: 96 ENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVIL 155
+ ++ AG +L+ R V + L+LG++++ L +L
Sbjct: 86 DAKRRRIDMAGNPGGLTLDRYAARRFVYGVFGLVLGLVFLTNDSTLF----------ALL 135
Query: 156 IGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQS 215
G A I V+ R+ I R PD LD+L + V SG+ QAL RVAE G
Sbjct: 136 TFAFGLTAADALIWQAVRDRREVIDRTLPDFLDVLAVVVSSGLGFRQALDRVAERYEG-- 193
Query: 216 VPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVL 275
P ++E+ +T+ ++ +R+ AF+ R + V AL Q + G+ I D+L +
Sbjct: 194 -PWADELRITLRQMDMGVSRRQAFDELRRRNSSEQVAQFVSALQQGEELGSPIADTLIQI 252
Query: 276 VSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILS 321
++ R + ++AA PK T+ ++F LP +++I L
Sbjct: 253 ATDMRRTDAQNSRRRAAKTIPKATMVTLVFLLPATMILIAAGMFLG 298
>gi|257791502|ref|YP_003182108.1| type II secretion system protein [Eggerthella lenta DSM 2243]
gi|257475399|gb|ACV55719.1| type II secretion system protein [Eggerthella lenta DSM 2243]
Length = 295
Score = 155 bits (392), Expect = 9e-36, Method: Composition-based stats.
Identities = 58/248 (23%), Positives = 124/248 (50%), Gaps = 9/248 (3%)
Query: 82 NFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKL 141
+FV + + + N+ N++ AAG + + + +++ ++ +I +++
Sbjct: 53 SFVSNMLPLSRAQERNLRNQIAAAGLNMK--PSTFYGLSVILSLLGMIALLVFSPYIVGS 110
Query: 142 LEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISID 201
L V+ G +G P ++ +RQ +I R +DLL I VE+G++++
Sbjct: 111 DTTSLLLFNAVVVAAGILG---PRGFLILKRNERQEAINRELASVIDLLSISVEAGLTME 167
Query: 202 QALRRVAEDIGGQSVPLSEEMLLTIAELSF-LPNRQVAFENFYNRTQMDCVRNATQALIQ 260
+A+R V+E + G L +E+ L +++ +R+ A +R Q + V ++I
Sbjct: 168 RAMRHVSERLDGT---LCKEIALCERDINLLGYSREDALRRLADRCQTEGVSMFVSSVIV 224
Query: 261 SDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAIL 320
S + G+SI L++ S R+ + E+K L K+ PM +F +P L+L+++ PA+L
Sbjct: 225 SAKSGSSISRVLKMQASVARNRQFTALEEKVEKLPTKMIFPMSMFIMPSLMLIVMAPAVL 284
Query: 321 SIIDTMKD 328
+++++
Sbjct: 285 TLVESFSG 292
>gi|307726638|ref|YP_003909851.1| type II secretion system F domain-containing protein [Burkholderia
sp. CCGE1003]
gi|307587163|gb|ADN60560.1| Type II secretion system F domain protein [Burkholderia sp.
CCGE1003]
Length = 293
Score = 155 bits (392), Expect = 9e-36, Method: Composition-based stats.
Identities = 51/197 (25%), Positives = 94/197 (47%), Gaps = 2/197 (1%)
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
+I +I + V ++ +G+ P +W ++ ++R + I + L
Sbjct: 95 VIGAVIAALLALLAMLALGVFFVPVLLGAALLGYFYPRIWTRDVRRRRVAQILKHLSIYL 154
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQ 247
D L + VE+G++I+ A+++ E G + PL E+ + +L NR A +R +
Sbjct: 155 DFLTLAVEAGLNINGAIQKAVEK--GPAGPLRWELEHVLRDLKSGLNRTEALRRLDDRLR 212
Query: 248 MDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFL 307
+ V N A++Q++R G + SLR + RSER AEKKA KL P+++F
Sbjct: 213 IKEVTNFVGAVVQAERMGAGLAKSLRFQSEQRRSERFQRAEKKAMEAPVKLVFPLLVFIF 272
Query: 308 PVLILVIIGPAILSIID 324
P+ +V+ P + +
Sbjct: 273 PITFIVLGFPIAMKFVQ 289
>gi|302521640|ref|ZP_07273982.1| integral membrane protein [Streptomyces sp. SPB78]
gi|318057612|ref|ZP_07976335.1| hypothetical protein SSA3_06724 [Streptomyces sp. SA3_actG]
gi|318080452|ref|ZP_07987784.1| hypothetical protein SSA3_28136 [Streptomyces sp. SA3_actF]
gi|302430535|gb|EFL02351.1| integral membrane protein [Streptomyces sp. SPB78]
Length = 300
Score = 155 bits (391), Expect = 1e-35, Method: Composition-based stats.
Identities = 71/297 (23%), Positives = 125/297 (42%), Gaps = 17/297 (5%)
Query: 29 YAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSK----SLRNFV 84
V++ L + + + + + R + +L + S+R++ DS LR
Sbjct: 6 LGVLLALLMAAGVGGALLGLRMYRSETKLPDDLALALEVGSTRVKAADSAVDRLGLRFAP 65
Query: 85 KKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEY 144
L L E ++ AG +L+ R V I L++ I+ L
Sbjct: 66 YVLKLMGPRRVEAKRRRIDMAGNPGGLTLDRYAARRAVYGIFGLLMAAIFASYGSPLF-- 123
Query: 145 PFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQAL 204
L G A I V++R+ I R PD LD+L + V +G+ QAL
Sbjct: 124 --------AFLALGFGLVAADATIWQAVRERRDVIDRTLPDFLDVLAVVVSAGLGFRQAL 175
Query: 205 RRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRY 264
RVAE G P ++E+ +T+ ++ +R+ AF+ R + V AL Q +
Sbjct: 176 ERVAEKYEG---PWADELRITLRQMDMGVSRRQAFDELRRRNNSEQVAQFVSALQQGEEL 232
Query: 265 GTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILS 321
G+ I ++L + ++ R +A ++AA PK T+ ++F LP +++I L
Sbjct: 233 GSPIAETLIQIANDMRRTDAQQARRRAAKTIPKATMVTLVFMLPATMILIATGMFLG 289
>gi|296158517|ref|ZP_06841347.1| Type II secretion system F domain protein [Burkholderia sp. Ch1-1]
gi|295891085|gb|EFG70873.1| Type II secretion system F domain protein [Burkholderia sp. Ch1-1]
Length = 293
Score = 155 bits (391), Expect = 1e-35, Method: Composition-based stats.
Identities = 51/178 (28%), Positives = 91/178 (51%), Gaps = 2/178 (1%)
Query: 147 QLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRR 206
V +IL+ +G+ P +W ++ ++R I R P LD L + VE+G++I+ A+++
Sbjct: 114 MFSVLVLILVAALGYIYPRIWTRDVRRRRVGQILRHLPIYLDFLTLAVEAGLNINGAIQK 173
Query: 207 VAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGT 266
E G PL E+ + +L NR A +R ++ V N ++Q++R G+
Sbjct: 174 SVEK--GPEGPLRRELEHVLRDLKSGLNRTEALRRLDDRLRIKEVTNLVGTVVQAERMGS 231
Query: 267 SIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIID 324
+ SLR + RSER AEK+A KL P+++F P+ +V+ P ++ +
Sbjct: 232 GLAKSLRFQSEQRRSERFQRAEKQAMEAPVKLVFPLLMFIFPITFIVLGFPIVMKFVQ 289
>gi|293391327|ref|ZP_06635661.1| Flp pilus assembly protein TadC [Aggregatibacter
actinomycetemcomitans D7S-1]
gi|290951861|gb|EFE01980.1| Flp pilus assembly protein TadC [Aggregatibacter
actinomycetemcomitans D7S-1]
Length = 288
Score = 155 bits (391), Expect = 1e-35, Method: Composition-based stats.
Identities = 63/310 (20%), Positives = 138/310 (44%), Gaps = 32/310 (10%)
Query: 14 LAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLR 73
L+ A+ T +F L A+ A + RK+ IT + S+
Sbjct: 7 LSYALLTVFGVFVLFLALS----------------ARRKFQHRKEVITGERPKDQSN--- 47
Query: 74 TRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGII 133
D + +++ L+ +L++ N + L+ G + +++ + I+ L+ G+
Sbjct: 48 --DEIAKGKSKQQIELELLLINNNPI--LKMLGIIDKN-------IKVKLLIMILLCGVY 96
Query: 134 WIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLIC 193
+++ L G + ++ V P + I ++++ + I +DL+ +
Sbjct: 97 YLYSLIDKTTDSSSLLFGFLTIL-IVTIVIPGILIGSILKSKIKKIMNDLAGFIDLVAVN 155
Query: 194 VESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRN 253
+++G+ I+ AL+ VA D + L+ ML I + S + A ++ +R
Sbjct: 156 LQTGMGIEAALKHVATDFKILNPDLTYVMLRIIRK-SEITGMSQALQDLSVSLPTAEIRM 214
Query: 254 ATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILV 313
+ QS +G+SI L L ++ R +L+ E+K +L K++VP+I+F + +I++
Sbjct: 215 FCTVMQQSLNFGSSIYHQLVQLSTDIREIQLLAIEEKLGTLSAKMSVPLILFIMFPIIIL 274
Query: 314 IIGPAILSII 323
I+ P ++ +
Sbjct: 275 ILAPGVMRVF 284
>gi|289675688|ref|ZP_06496578.1| type II secretion system protein [Pseudomonas syringae pv. syringae
FF5]
Length = 252
Score = 155 bits (391), Expect = 1e-35, Method: Composition-based stats.
Identities = 51/243 (20%), Positives = 104/243 (42%), Gaps = 4/243 (1%)
Query: 86 KLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYP 145
++ ++I +D L G+R ++ ++ VP+ +++ I+ + K ++ P
Sbjct: 14 RIGQRSISLDSETQILLNRIGWRRASKRSLFAACQVGVPVGLMVVAILGQMLFFKGIQQP 73
Query: 146 FQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALR 205
F A I G+ P ++ + ++RQ + + LL I ESG++++QALR
Sbjct: 74 F----IAPIFALGAGYLLPKRILATVARRRQKQVVVEISTFIPLLRILFESGMAVEQALR 129
Query: 206 RVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYG 265
++ + LSEE+ + + + +D + + L Q G
Sbjct: 130 VLSNEGKDLLPVLSEEIRVVLMRVDSGLELGEELRKTAALLDVDELSDTCVILNQLIHQG 189
Query: 266 TSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDT 325
SL L RL ++ + L K++V M++F P L++V+ GP ++I
Sbjct: 190 GGALKSLLTLKQLIDDRRLTRLQEYISKLSAKMSVVMMVFLFPALLIVLAGPGFMAISSA 249
Query: 326 MKD 328
+
Sbjct: 250 LGS 252
>gi|149188858|ref|ZP_01867148.1| hypothetical Flp pilus assembly protein TadC [Vibrio shilonii AK1]
gi|148837278|gb|EDL54225.1| hypothetical Flp pilus assembly protein TadC [Vibrio shilonii AK1]
Length = 282
Score = 154 bits (390), Expect = 2e-35, Method: Composition-based stats.
Identities = 49/305 (16%), Positives = 119/305 (39%), Gaps = 29/305 (9%)
Query: 18 ITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDS 77
+ ++ L +++ S E+R K V + S
Sbjct: 1 MMLLAALIVLFVSLLFLIFESLRAEQRRKKV-----------------EDYIGGQTLNSS 43
Query: 78 KSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFG 137
+ F + + + K AG+ + +L V + +
Sbjct: 44 SRVNRFFVRFGKEHR---HELEQKFIEAGYYNTEWARFYFPAKLAVLAV--------LSV 92
Query: 138 YDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESG 197
+ + ++ V++ P + + + P LD++ +CV++G
Sbjct: 93 LVLMTDMTASNKLLTVLVSLVAVIVVPDMLLQLRRKVLIGKTSAQLPYLLDMMSVCVQTG 152
Query: 198 ISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQA 257
++I+ AL + +++ L ++ T ++ + + + A + +R VR+
Sbjct: 153 MTIEAALIYLGKELAEFDSDLCYQVKRT-SDSAKIHGLEKALNDLSDRIPTPAVRSFVLT 211
Query: 258 LIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGP 317
+IQ+ +YGTS+ L L + R +++ E+K L K+++P+I+F + ++++I+ P
Sbjct: 212 IIQNLQYGTSVAQVLSDLAEDMRKVQILAVEEKVGKLSAKMSIPLILFIMFPIVILILAP 271
Query: 318 AILSI 322
I+ +
Sbjct: 272 GIMQM 276
>gi|32452628|gb|AAP43990.1| TadC [Aggregatibacter actinomycetemcomitans]
Length = 288
Score = 154 bits (389), Expect = 2e-35, Method: Composition-based stats.
Identities = 53/277 (19%), Positives = 131/277 (47%), Gaps = 15/277 (5%)
Query: 47 SVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAG 106
+++ R+ ++++ + ++ S D + +++ L+ +L++ N + L+ G
Sbjct: 23 ALSARRKFQHRKEVITGERPKDQS----NDEIAKGKSKQQIELELLLINNNPI--LKMLG 76
Query: 107 FRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSV 166
+ +++ + I+ L+ G+ +++ L G + ++ V P +
Sbjct: 77 IIDKN-------IKVKLLIMILLCGVYYLYSLIDKTTDSSSLLFGFLTIL-IVTIVIPGI 128
Query: 167 WISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTI 226
I ++++ + I +DL+ + +++G+ I+ AL+ VA D + L+ ML I
Sbjct: 129 LIGSILKSKIKKIMNDLAGFIDLVAVNLQTGMGIEAALKHVATDFKILNPDLTYVMLRII 188
Query: 227 AELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLME 286
+ S + A ++ +R + QS +G+SI L L ++ R +L+
Sbjct: 189 RK-SEITGMSQALQDLSVSLPTAEIRMFCTVMQQSLNFGSSIYHQLVQLSTDIREIQLLA 247
Query: 287 AEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSII 323
E+K +L K++VP+I+F + +I++I+ P ++ +
Sbjct: 248 IEEKLGTLSAKMSVPLILFIMFPIIILILAPGVMRVF 284
>gi|291451546|ref|ZP_06590936.1| conserved hypothetical protein [Streptomyces albus J1074]
gi|291354495|gb|EFE81397.1| conserved hypothetical protein [Streptomyces albus J1074]
Length = 296
Score = 154 bits (389), Expect = 2e-35, Method: Composition-based stats.
Identities = 59/226 (26%), Positives = 102/226 (45%), Gaps = 13/226 (5%)
Query: 96 ENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVIL 155
+ ++ AG +L+ R V + L+LG++++ L +L
Sbjct: 73 DAKRRRIDMAGNPGGLTLDRYAARRFVYGVFGLVLGLVFLTNDSTLF----------ALL 122
Query: 156 IGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQS 215
G A I V+ R+ I R PD LD+L + V SG+ QAL RVAE G
Sbjct: 123 TFAFGLTAADALIWQAVRDRREVIDRTLPDFLDVLAVVVSSGLGFRQALDRVAERYEG-- 180
Query: 216 VPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVL 275
P ++E+ +T+ ++ +R+ AF+ R + V AL Q + G+ I D+L +
Sbjct: 181 -PWADELRITLRQMDMGVSRRQAFDELRRRNSSEQVAQFVSALQQGEELGSPIADTLIQI 239
Query: 276 VSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILS 321
++ R + ++AA PK T+ ++F LP +++I L
Sbjct: 240 ATDMRRTDAQNSRRRAAKTIPKATMVTLVFLLPATMILIAAGMFLG 285
>gi|258515694|ref|YP_003191916.1| type II secretion system protein [Desulfotomaculum acetoxidans DSM
771]
gi|257779399|gb|ACV63293.1| type II secretion system protein [Desulfotomaculum acetoxidans DSM
771]
Length = 294
Score = 153 bits (388), Expect = 2e-35, Method: Composition-based stats.
Identities = 67/283 (23%), Positives = 122/283 (43%), Gaps = 16/283 (5%)
Query: 48 VAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLN--LKAILVDENIVNKLRAA 105
V E R ++ + ++++ L K +K L ++ E + LR A
Sbjct: 24 VKRREEKKRLEEYLQISEENSEENLSLSLQKIKAGVIKLFRPLLPSVTTLEKMEFNLRRA 83
Query: 106 GFRSEYSLNILLVVRLVVPIIFLIL-GIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAP 164
+ + + +RL + + +L GI + DK+L Y G + F P
Sbjct: 84 NC--KITAEEIYTLRLTLSVGAAVLTGIFYFPAIDKILLYGGAT--------GGLFFLLP 133
Query: 165 SVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLL 224
+ +I+ ++ RQ + D +DLL +++G+ + ++ RV + + G L+EE
Sbjct: 134 TKYINMKIRARQKRAQLEILDFIDLLTNGIDAGLDLSTSIDRVTKHMPGI---LAEEFQY 190
Query: 225 TIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERL 284
E+ R A +N R + V A+IQ++R G I L+ + + +
Sbjct: 191 AFVEIELGRRRSEALKNMAQRLDIKDVNLLVDAIIQAERTGVPIAKVLKDQANRIKQDFR 250
Query: 285 MEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
A K A + K+ PMI+F LP L +V++GP + I MK
Sbjct: 251 TNALKMAQAASIKMLAPMILFILPALFIVVLGPPFIGIGQLMK 293
>gi|29829793|ref|NP_824427.1| hypothetical protein SAV_3251 [Streptomyces avermitilis MA-4680]
gi|29606902|dbj|BAC70962.1| hypothetical protein [Streptomyces avermitilis MA-4680]
Length = 301
Score = 153 bits (388), Expect = 3e-35, Method: Composition-based stats.
Identities = 60/223 (26%), Positives = 101/223 (45%), Gaps = 13/223 (5%)
Query: 99 VNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGY 158
++ AG +LN R V I ++LG+I++ L +
Sbjct: 81 RRRIDMAGNPGGLTLNRYAARRAVYGIFGVVLGLIFLTNGHPLF----------ALGTLA 130
Query: 159 VGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPL 218
G A I V++R+ I R PD LD+L + V +G+ QAL RVAE G P
Sbjct: 131 FGLLAADALIWQAVRERKDVIDRTLPDFLDVLAVVVSAGLGFRQALDRVAEKYEG---PW 187
Query: 219 SEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSE 278
++E+ +T+ ++ +R+ AF+ R + V AL Q + G+ I ++L L ++
Sbjct: 188 ADELRITLRQMDMGVSRRQAFDELRKRNSSEQVAQFVSALQQGEELGSPIAETLIQLATD 247
Query: 279 TRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILS 321
R A ++AA PK T+ ++F LP +++I L
Sbjct: 248 MRRTDAQNARRRAAKTIPKATMVTLVFMLPATMILIATGMFLG 290
>gi|66047622|ref|YP_237463.1| type II secretion system protein [Pseudomonas syringae pv. syringae
B728a]
gi|63258329|gb|AAY39425.1| type II secretion system protein [Pseudomonas syringae pv. syringae
B728a]
Length = 294
Score = 152 bits (385), Expect = 5e-35, Method: Composition-based stats.
Identities = 56/283 (19%), Positives = 118/283 (41%), Gaps = 11/283 (3%)
Query: 46 KSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAA 105
+ + ER + R+ + +++ S LR ++ ++I +D L
Sbjct: 23 RQRSNERLVARRLRGQVIRESRIGSLLRLLGDT-------RIGQRSISLDSETQILLNRI 75
Query: 106 GFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPS 165
G+R ++ ++ VP+ +++ I+ + K ++ P + A I G+ P
Sbjct: 76 GWRRASKRSLFAACQVGVPVGLMVIVILGQLLFFKGIQQP----LIAPIFALGAGYLLPK 131
Query: 166 VWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLT 225
++ + ++RQ + + LL I ESG++++QALR ++ + LSEE+ +
Sbjct: 132 RILAAVARRRQKQVVVEISTFIPLLRILFESGMAVEQALRVLSNEGKDLLPVLSEEIRVV 191
Query: 226 IAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLM 285
+ + +D + + L Q G SL L RL
Sbjct: 192 LMRVDSGLELGEELRKTAALLDVDELSDTCVILNQLIHQGGGALKSLLTLKQLIDDRRLT 251
Query: 286 EAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMKD 328
++ + L K++V M++F P L++V+ GP ++I +
Sbjct: 252 RLQEYISKLSAKMSVVMMVFLFPALLIVLAGPGFMAISRALGS 294
>gi|330976793|gb|EGH76829.1| type II secretion system protein [Pseudomonas syringae pv. aptata
str. DSM 50252]
Length = 294
Score = 152 bits (384), Expect = 7e-35, Method: Composition-based stats.
Identities = 56/283 (19%), Positives = 118/283 (41%), Gaps = 11/283 (3%)
Query: 46 KSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAA 105
+ + ER + R+ + +++ S LR ++ ++I +D L
Sbjct: 23 RQRSNERLVARRLRGQVIRESRIGSLLRLLGDT-------RIGQRSISLDSETQILLNRI 75
Query: 106 GFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPS 165
G+R ++ ++ VP+ +++ I+ + K ++ P + A I G+ P
Sbjct: 76 GWRRASKRSLFAACQVGVPVGLMVIVILGQLLFFKGIQQP----LIAPIFALGAGYLLPK 131
Query: 166 VWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLT 225
++ + ++RQ + + LL I ESG++++QALR ++ + LSEE+ +
Sbjct: 132 RILATVARRRQKQVVVEISTFIPLLRILFESGMAVEQALRVLSNEGKDLLPVLSEEIRVV 191
Query: 226 IAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLM 285
+ + +D + + L Q G SL L RL
Sbjct: 192 LMRVDSGLELGEELRKTAALLDVDELSDTCVILNQLIHQGGGALKSLLTLKQLIDDRRLT 251
Query: 286 EAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMKD 328
++ + L K++V M++F P L++V+ GP ++I +
Sbjct: 252 RLQEYISKLSAKMSVVMMVFLFPALLIVLAGPGFMAISRALGS 294
>gi|117617658|ref|YP_855996.1| Flp pilus assembly protein TadC [Aeromonas hydrophila subsp.
hydrophila ATCC 7966]
gi|117559065|gb|ABK36013.1| Flp pilus assembly protein TadC [Aeromonas hydrophila subsp.
hydrophila ATCC 7966]
Length = 294
Score = 152 bits (384), Expect = 7e-35, Method: Composition-based stats.
Identities = 56/273 (20%), Positives = 125/273 (45%), Gaps = 4/273 (1%)
Query: 55 LRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLN 114
++QQ + + R ++ ++ + + L AG S + +
Sbjct: 26 RQQQQWLAQSRRYGPPRQGREVARDWLSWCGRGYPVGAREQARLQQLLAQAGIFSRHGFD 85
Query: 115 ILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQK 174
L +L+ + + ++W + + V++ VG P W+ +K
Sbjct: 86 RLRAAKLLGGLGGAMAVLLWRLLAAPADGFT----LMWVLVAYVVGAGVPERWLQWRARK 141
Query: 175 RQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPN 234
+++ ++ PDA+DLL+I VE+G+++D+AL RV +G L+ + L T AE+ +
Sbjct: 142 VKAAQQKVVPDAIDLLVISVEAGLALDRALLRVGHYLGALEPGLARQFLRTHAEIQMRGD 201
Query: 235 RQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASL 294
+ RT + + L + +YG+ + +++R + E R R + E++A SL
Sbjct: 202 QAGCLARLAWRTGLPELDRLANTLQMAQQYGSPLAETMRTISQEARQMRRLALEEQAGSL 261
Query: 295 GPKLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
K+T+ + + ++++II P + +I++++
Sbjct: 262 PGKITLIQMALIMLPMLVLIIAPTLNLLINSLR 294
>gi|163857687|ref|YP_001631985.1| putative Flp pilus assembly protein [Bordetella petrii DSM 12804]
gi|163261415|emb|CAP43717.1| putative Flp pilus assembly protein [Bordetella petrii]
Length = 332
Score = 151 bits (382), Expect = 1e-34, Method: Composition-based stats.
Identities = 54/277 (19%), Positives = 111/277 (40%), Gaps = 3/277 (1%)
Query: 52 REILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSE- 110
R+ R + + + + +L + + L L+ + + AG+
Sbjct: 52 RDPARAALPADESQPAGRLAALAQSTDALGKRLSEGRLAESLLPDEDNKLIELAGYAKPA 111
Query: 111 YSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISN 170
++ +V+R + + + ++ + L V + + VG+ P +
Sbjct: 112 HARARYVVLRFGLALALPMAAVLARRAW--LGPGSMMALVFTLFIGFAVGYLLPKWMLVR 169
Query: 171 LVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELS 230
V+ R+ + P +DLL + G+S+DQ+L + D L E ++ A +
Sbjct: 170 RVKARKKQAGKELPLLVDLLRLLQGVGLSVDQSLSVIVNDFTPVLPVLGHEFGVSTAVYA 229
Query: 231 FLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKK 290
R+ + D + + L+Q DR+G ++ + L R +R E ++K
Sbjct: 230 RGRTREQSLARLSQGFDDDDLAAICRLLVQVDRHGGAVQEPLNRFAQRIRDKRRFELKEK 289
Query: 291 AASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
L K+T MI+ LP L++V G ILS++ +
Sbjct: 290 IGRLTVKMTGVMIVTLLPALLIVTGGMGILSVLRGLS 326
>gi|307133501|dbj|BAJ19013.1| TadC [Aggregatibacter actinomycetemcomitans]
Length = 288
Score = 151 bits (381), Expect = 2e-34, Method: Composition-based stats.
Identities = 55/277 (19%), Positives = 133/277 (48%), Gaps = 15/277 (5%)
Query: 47 SVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAG 106
+++ ++ +++I + ++ D + +++ L+ +L++ N + K+ G
Sbjct: 23 ALSARKKFQHRKEIITGERPKDQDS----DEVAKNKSKQQIELELLLINNNPILKVL--G 76
Query: 107 FRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSV 166
+ +++ + I+ L+ G+ +++ L +G + ++ V P V
Sbjct: 77 IIDKN-------IKVKLLIMLLLFGVYYLYSLTDEATDSSSLLLGFLTIL-IVTIVVPGV 128
Query: 167 WISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTI 226
I ++++ + I +DL+ + V++GISI+ AL++VA D + L+ ML I
Sbjct: 129 LIGSILKAKIKKIMNDLAGFIDLVAVNVQTGISIEAALKQVATDFKTLNPDLTYVMLRII 188
Query: 227 AELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLME 286
+ S + A ++ +R + QS +G+SI L L ++ R +L+
Sbjct: 189 RK-SEITGMSQALQDLSVSLPTTEIRMFCTVMQQSLNFGSSIYHQLIQLSTDIREIQLLA 247
Query: 287 AEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSII 323
E+K +L K+++P+I+F + +I++I+ P ++ +
Sbjct: 248 IEEKLGTLSAKMSIPLILFIMFPIIILILAPGVMRVF 284
>gi|90406745|ref|ZP_01214938.1| Flp pilus assembly protein TadC [Psychromonas sp. CNPT3]
gi|90312198|gb|EAS40290.1| Flp pilus assembly protein TadC [Psychromonas sp. CNPT3]
Length = 288
Score = 151 bits (381), Expect = 2e-34, Method: Composition-based stats.
Identities = 62/240 (25%), Positives = 126/240 (52%), Gaps = 6/240 (2%)
Query: 89 LKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQL 148
L + V++ + +L AGF ++ + + +LV F++L GY L
Sbjct: 54 LPTLKVNKKLNIQLLRAGFNNDNASLYFRLFKLV----FMLLCFGAYLGYKHFSLTSLVL 109
Query: 149 RVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVA 208
A++ + W+ ++ S+I A PDALDL++ICVESG++++ RV
Sbjct: 110 AEAAIV--AMISGMVCERWLIARAKRITSNIALATPDALDLMVICVESGLTLEAMFGRVG 167
Query: 209 EDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSI 268
+++ LS + L+T EL L R A +N NR + + N +L Q+++YG SI
Sbjct: 168 QEMYQICPELSRQWLITEVELRLLEPRSRALKNLANRCAVVEIENLVISLSQAEKYGGSI 227
Query: 269 GDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMKD 328
+LR++ +++R ++ + E+K + K+ +P+++ + ++++I+ P +S++ T+ +
Sbjct: 228 AQTLRLIATDSRQKQYLSLEEKVGKIPAKMALPLVLLVMLPVVVLIVAPTFISLLSTLGE 287
>gi|297192377|ref|ZP_06909775.1| integral membrane protein [Streptomyces pristinaespiralis ATCC
25486]
gi|197723022|gb|EDY66930.1| integral membrane protein [Streptomyces pristinaespiralis ATCC
25486]
Length = 296
Score = 150 bits (380), Expect = 2e-34, Method: Composition-based stats.
Identities = 56/215 (26%), Positives = 95/215 (44%), Gaps = 13/215 (6%)
Query: 102 LRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGF 161
L AG +++ R V ++ ++ + V +L G
Sbjct: 79 LDMAGNPGGLTVDRYAARRAVYGVLGGLVAFGML----------MNGHVVLAVLFLLYGL 128
Query: 162 CAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEE 221
V + + +R+ I+R PD LD+L + V +G+ QAL RVAE G P S+E
Sbjct: 129 FWTDVLLRAAIARRRDDIERTLPDFLDVLAVVVSAGLGFRQALERVAEKYAG---PWSDE 185
Query: 222 MLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRS 281
+ +T+ ++ R+ AFE R + + V AL Q + G I D+L + ++ R
Sbjct: 186 LRITLRQMDMGMGRREAFEQLRRRNESEQVSMFVSALQQGEELGAPIVDTLIQIANDMRR 245
Query: 282 ERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIG 316
A +KAA PK T+ + F LP +++I+
Sbjct: 246 TDAQNARRKAAKAVPKATLIVTSFMLPGTMILIVA 280
>gi|302185193|ref|ZP_07261866.1| type II secretion system protein [Pseudomonas syringae pv. syringae
642]
Length = 294
Score = 150 bits (380), Expect = 2e-34, Method: Composition-based stats.
Identities = 55/276 (19%), Positives = 114/276 (41%), Gaps = 7/276 (2%)
Query: 56 RKQQITSLQKDSASSRL-RTRDSKSLRNFVK--KLNLKAILVDENIVNKLRAAGFRSEYS 112
R+++ L ++ R SL + ++ ++I +D L G+R
Sbjct: 23 RQRRNERLVARRLRGQVIRESRIGSLLRLLGDTRIGQRSITLDSETQMLLNRIGWRRASK 82
Query: 113 LNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLV 172
++ ++ VP+ + + I+ + K ++ P + A I G+ P ++ +
Sbjct: 83 RSLFAACQVGVPVGLMAMVILGQLLFFKGIQQP----LIAPIFALGAGYLLPKRILAAVA 138
Query: 173 QKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFL 232
++RQ + + LL I ESG++++QALR ++ + LSEE+ + + +
Sbjct: 139 RRRQKQVVVEISTFIPLLRILFESGMAVEQALRVLSNEGKDLLPVLSEEIRVVLMRVDSG 198
Query: 233 PNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAA 292
+D + + L Q G SL L RL ++ +
Sbjct: 199 LELGEELRKTAALLDVDELSDTCVILNQLIHQGGGALKSLLTLKQLIDDRRLTRLQEYIS 258
Query: 293 SLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMKD 328
L K++V M++F P L++V+ GP ++I +
Sbjct: 259 KLSAKMSVVMMVFLFPALLIVLAGPGFMAISRALGS 294
>gi|323529156|ref|YP_004231308.1| Type II secretion system F domain-containing protein [Burkholderia
sp. CCGE1001]
gi|323386158|gb|ADX58248.1| Type II secretion system F domain protein [Burkholderia sp.
CCGE1001]
Length = 293
Score = 150 bits (379), Expect = 3e-34, Method: Composition-based stats.
Identities = 48/177 (27%), Positives = 88/177 (49%), Gaps = 2/177 (1%)
Query: 148 LRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRV 207
V +I +G+ P +W ++ ++R + I + LD L + VE+G++I+ A+++
Sbjct: 115 FSVLVLIGAALLGYFYPRIWTRDVRRRRVAQILKHLSIYLDFLTLAVEAGLNINGAIQKA 174
Query: 208 AEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTS 267
E G + P E+ + +L NR A +R ++ V N A++Q++R G
Sbjct: 175 VEK--GPAGPFRWELEHVLRDLKSGLNRTEALRRLDDRLRIKEVTNFVGAVVQAERMGAG 232
Query: 268 IGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIID 324
+ SLR + RSER AEK+A KL P+++F P+ +V+ P + +
Sbjct: 233 LAKSLRFQSEQRRSERFQRAEKQAMEAPVKLVFPLLVFIFPITFIVLGFPIAMKFVQ 289
>gi|262275464|ref|ZP_06053274.1| type II/IV secretion system protein TadC associated with Flp pilus
assembly [Grimontia hollisae CIP 101886]
gi|262220709|gb|EEY72024.1| type II/IV secretion system protein TadC associated with Flp pilus
assembly [Grimontia hollisae CIP 101886]
Length = 288
Score = 150 bits (378), Expect = 4e-34, Method: Composition-based stats.
Identities = 39/229 (17%), Positives = 100/229 (43%), Gaps = 6/229 (2%)
Query: 95 DENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVI 154
+ I K AG + +++ V + ++ + ++ +
Sbjct: 65 NNEIAEKFIGAGIYNTAMAPYYFLIKYTVGAVGAMIILTL-----SGESVSLLNKIVMLA 119
Query: 155 LIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQ 214
+ + P +++ + I R P LD++ +CV++G++I+ ++ + ++
Sbjct: 120 ALVFTVIVLPDLYLEMRRRALARKITRQLPYLLDIMGVCVQTGMTIESSIFYLTTEMAAF 179
Query: 215 SVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRV 274
++ + + + + + A + + L QS ++GTSI ++L +
Sbjct: 180 DKDIAYVLKR-LRDRAQTKGLEKALLELNEHVPAPEMHSFVMTLTQSMQHGTSIYEALSI 238
Query: 275 LVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSII 323
L + R +L+ E+KA L K++VP+I+F + ++++I P I+ ++
Sbjct: 239 LAKDIREIQLLSLEEKAGKLSSKMSVPLILFIMMPIVILITAPGIMRML 287
>gi|283778864|ref|YP_003369619.1| type II secretion system protein [Pirellula staleyi DSM 6068]
gi|283437317|gb|ADB15759.1| type II secretion system protein [Pirellula staleyi DSM 6068]
Length = 361
Score = 150 bits (378), Expect = 4e-34, Method: Composition-based stats.
Identities = 54/226 (23%), Positives = 107/226 (47%), Gaps = 5/226 (2%)
Query: 102 LRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGF 161
LR AGF S ++ + R ++ ++F ++ I + + L VGA I I
Sbjct: 90 LRQAGFYSRTAMASVYAYRFLL-LVFPLVCAGLIAIFSPRSQTFRILFVGAFIAIALS-- 146
Query: 162 CAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEE 221
P ++I +KR + I D LD+L +C+ G+ + +L VA+++ L++E
Sbjct: 147 IIPRLYIFFRRRKRLTEINNGLADMLDMLGMCLSGGMPLSASLDHVAKNL-TNYPALADE 205
Query: 222 MLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRS 281
+L+ + + + + + A +F NR VR L + D+ G+SI +L R+
Sbjct: 206 LLIMKRQ-AEVSSLKHALADFANRLDTPEVRQVASLLSRGDQLGSSISRNLLDQADHFRT 264
Query: 282 ERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
R A +A LT P++ F P ++++++ P+ + + + +
Sbjct: 265 ARRQMATMQANRTPVFLTFPLMFCFAPAVLILLMSPSFMQLSEFLS 310
>gi|307548792|dbj|BAJ19114.1| TadC [Aggregatibacter actinomycetemcomitans]
gi|307548807|dbj|BAJ19128.1| TadC [Aggregatibacter actinomycetemcomitans]
Length = 288
Score = 149 bits (376), Expect = 6e-34, Method: Composition-based stats.
Identities = 53/277 (19%), Positives = 133/277 (48%), Gaps = 15/277 (5%)
Query: 47 SVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAG 106
+++ ++ ++++ + ++ D + +++ L+ +L++ N + K+ G
Sbjct: 23 ALSARKKFQYRKEVITGERPKDQDS----DEVAKNKSKQQIELELLLINNNPILKVL--G 76
Query: 107 FRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSV 166
+ +++ + I+ L+ G+ +++ + L +G + ++ P V
Sbjct: 77 IIDKN-------IKVKLLIMLLLFGVYYLYSFTDETTDSSSLLLGFLTILIIT-IVIPGV 128
Query: 167 WISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTI 226
I ++++ + I +DL+ + V++GISI+ AL++VA D + L+ ML I
Sbjct: 129 LIGSILKAKIKKIMNDLAGFIDLVAVNVQTGISIEAALKQVATDFKTLNPDLTYVMLRII 188
Query: 227 AELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLME 286
+ S + A ++ +R + QS +G+SI L L ++ R +L+
Sbjct: 189 RK-SEITGMSQALQDLSVSLPTTEIRMFCTVMQQSLNFGSSIYHQLIQLSTDIREIQLLA 247
Query: 287 AEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSII 323
E+K +L K+++P+I+F + +I++I+ P ++ +
Sbjct: 248 IEEKLGTLSAKMSIPLILFIMFPIIILILAPGVMRVF 284
>gi|293604635|ref|ZP_06687037.1| type II secretion system protein F domain protein [Achromobacter
piechaudii ATCC 43553]
gi|292816966|gb|EFF76045.1| type II secretion system protein F domain protein [Achromobacter
piechaudii ATCC 43553]
Length = 236
Score = 149 bits (376), Expect = 7e-34, Method: Composition-based stats.
Identities = 54/229 (23%), Positives = 104/229 (45%), Gaps = 2/229 (0%)
Query: 98 IVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIG 157
+ +L A + ++ + + + G L+ P Q + + IG
Sbjct: 9 LRGRLNRAVEVAGLPASVGYAHIVALAASTALFAGGVCVGILVALDVPIQRGLLWSMAIG 68
Query: 158 YVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVP 217
V AP + L +KR+ SI+R P D++ +CVE+G+S+ AL++ A+ G
Sbjct: 69 LVASMAPRASLHGLSEKRRRSIERDLPFVFDMMTLCVEAGLSVQGALQQAAQ--SGPKGA 126
Query: 218 LSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVS 277
L + + +AE+ R A + +R+ + AL Q++ G S+G LR +
Sbjct: 127 LRDALAQALAEMRAGVTRMDAIKALADRSNSPVAKTWAGALAQAEALGISLGPVLRAQAA 186
Query: 278 ETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
+ RS+R + AE++A K+ +P+I P +V+ P + ++ +
Sbjct: 187 QCRSDRHVRAEQQAMQAPVKMLLPLIGCIFPCTFIVLAFPIAVQLLQGI 235
>gi|295836764|ref|ZP_06823697.1| integral membrane protein [Streptomyces sp. SPB74]
gi|295826195|gb|EFG64730.1| integral membrane protein [Streptomyces sp. SPB74]
Length = 300
Score = 149 bits (376), Expect = 7e-34, Method: Composition-based stats.
Identities = 56/226 (24%), Positives = 99/226 (43%), Gaps = 13/226 (5%)
Query: 96 ENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVIL 155
E ++ AG +L+ R V + L++ I+ LL
Sbjct: 77 EAKRRRIDMAGNPGGLTLDRYAARRAVYGVFGLLMAAIFASYGSPLLALLALAFGLVAA- 135
Query: 156 IGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQS 215
I V++R++ I R PD LD+L + V +G+ QAL RVAE G
Sbjct: 136 ---------DATIWQAVRERRAVIDRTLPDFLDVLAVVVSAGLGFRQALERVAEKYEG-- 184
Query: 216 VPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVL 275
P ++E+ +T+ ++ +R+ AF+ R + V AL Q + G+ I ++L +
Sbjct: 185 -PWADELRITLRQMDMGVSRRQAFDELRRRNNSEQVAQFVSALQQGEELGSPIAETLIQI 243
Query: 276 VSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILS 321
++ R +A ++AA PK T+ ++F LP +++I L
Sbjct: 244 ANDMRRTDAQQARRRAAKTIPKATMATLVFMLPATMILIATGMFLG 289
>gi|319788658|ref|YP_004148133.1| type II secretion system F domain [Pseudoxanthomonas suwonensis
11-1]
gi|317467170|gb|ADV28902.1| Type II secretion system F domain [Pseudoxanthomonas suwonensis
11-1]
Length = 296
Score = 149 bits (376), Expect = 7e-34, Method: Composition-based stats.
Identities = 54/254 (21%), Positives = 112/254 (44%), Gaps = 6/254 (2%)
Query: 52 REILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLK-AILVDENIVNKLRAAGFRSE 110
R +R+ ++ RL + ++L + + E +L+AAG
Sbjct: 24 RGAIREVELEDRTYYDPLPRLMQMMWPLVTVLTRRLAPRLNVSQLEQTHRQLQAAGQDYT 83
Query: 111 YSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISN 170
+ +R I+ ++ ++ + KL + V+ G +G+ P++W+
Sbjct: 84 LTPEEFYGLRAASAIVVILFFLLCVLMLGKLGPSSV---LACVMFGGVLGWLYPALWLGE 140
Query: 171 LVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELS 230
+ R ++ R P LD + + VE+G+++ + + G + LS+E + ++
Sbjct: 141 RRKLRHKAVVRDLPVYLDFITMSVEAGLNVTGGIEQAVAK--GPAGALSQEFSRMLRDIR 198
Query: 231 FLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKK 290
R A + R + + N T ALIQ+D+ G ++ D+LR ++ R ER + AEK
Sbjct: 199 AGLPRAEALKRMSERMDISQITNFTSALIQADKVGANLSDTLRAQANQRREERFLRAEKL 258
Query: 291 AASLGPKLTVPMII 304
A K+ +P+++
Sbjct: 259 ALEAPVKMMLPLVM 272
>gi|186473167|ref|YP_001860509.1| type II secretion system protein [Burkholderia phymatum STM815]
gi|184195499|gb|ACC73463.1| type II secretion system protein [Burkholderia phymatum STM815]
Length = 292
Score = 149 bits (376), Expect = 7e-34, Method: Composition-based stats.
Identities = 49/212 (23%), Positives = 96/212 (45%), Gaps = 9/212 (4%)
Query: 113 LNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLV 172
L + +V ++ + ++ A+ VG+ P +W+ ++
Sbjct: 86 ARQFLALSMVSSFGAALIAL-------TVMLASGLFSAAALCFAMCVGYFYPRIWMRDVR 138
Query: 173 QKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFL 232
++ +++ R P LD L + VE+G++++ A+++ E G PL E + +L
Sbjct: 139 RRYVATVLRQLPIYLDFLTLAVEAGLNVNGAIQKAVEK--GPDGPLRREFEHVLRDLKSG 196
Query: 233 PNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAA 292
R A F R Q+ V N + + Q++R G+ + +LR + R+ER AEK+A
Sbjct: 197 LKRGDALRRFDERQQIGEVSNLVRTIAQAERMGSGLAKTLRFQSEQRRAERFQRAEKQAM 256
Query: 293 SLGPKLTVPMIIFFLPVLILVIIGPAILSIID 324
KL P+++F PV +V+ P + +
Sbjct: 257 EAPVKLLFPLLVFIFPVTFIVLGFPIAMKFMQ 288
>gi|187251609|ref|YP_001876091.1| TadC subunit [Elusimicrobium minutum Pei191]
gi|186971769|gb|ACC98754.1| TadC subunit [Elusimicrobium minutum Pei191]
Length = 296
Score = 148 bits (375), Expect = 8e-34, Method: Composition-based stats.
Identities = 71/326 (21%), Positives = 140/326 (42%), Gaps = 40/326 (12%)
Query: 5 FFDLFDATELAVAITTA-VSIFSLIYAVVIP----SLGSGELEKRMKSVAVEREILRKQQ 59
FD L +++ ++F L+ + P S KRMK+ +
Sbjct: 1 MFDQMKEVGLMISLGAGSFAVFMLVMRLFAPEDAPLSVSDIEAKRMKATS---------S 51
Query: 60 ITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVV 119
+S+++D+ +L ++ L+ L +++++ G + +L
Sbjct: 52 FSSIKQDTMWGKL-------CLYILEAFKLEKPLEEQHLLL-----GSPATPQPVTILYQ 99
Query: 120 RLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSI 179
++ ++ + L+ ++ +GF P+ +++ +QKRQ +
Sbjct: 100 KI-------------LWAILLPILVLLVLKNFLFVIFIPLGFYIPTALVNSKIQKRQRDM 146
Query: 180 KRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAF 239
+ +DL + +ESG+ A R+ I + L EE+ + E+ +R+ A
Sbjct: 147 LGNFSTTVDLAALIIESGLDYMTAFDRIIR-IAKEKTVLEEELDKMLNEVKLGYSRREAL 205
Query: 240 ENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLT 299
E NRT + +R+ +IQSD GTS+ D LR + R R+ +AEK AA K+
Sbjct: 206 ERLANRTGVQEIRSFVGLIIQSDELGTSLVDLLRNFSIDLRFRRMNKAEKLAAQASTKML 265
Query: 300 VPMIIFFLPVLILVIIGPAILSIIDT 325
VP+ +F P + ++I+ P + II +
Sbjct: 266 VPLFLFIFPTVFILILAPMLKDIISS 291
>gi|5670332|gb|AAD38174.2|AF152598_3 TadC [Aggregatibacter actinomycetemcomitans]
gi|26000717|gb|AAN75213.1| TadC [Aggregatibacter actinomycetemcomitans]
Length = 288
Score = 148 bits (375), Expect = 9e-34, Method: Composition-based stats.
Identities = 52/277 (18%), Positives = 132/277 (47%), Gaps = 15/277 (5%)
Query: 47 SVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAG 106
+++ ++ ++++ + ++ D + +++ L+ +L++ N + L+ G
Sbjct: 23 ALSARKKFQYRKEVITGERPKDQDS----DEVAKNKSKQQIELELLLINNNPI--LKVLG 76
Query: 107 FRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSV 166
+ +++ + I+ L+ G+ +++ + L +G + ++ P V
Sbjct: 77 IIDKN-------IKVKLLIMLLLFGVYYLYSFTDETTDSSSLLLGFLTILIIT-IVIPGV 128
Query: 167 WISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTI 226
I ++++ + I +DL+ + V++GISI+ AL++VA D + L+ ML I
Sbjct: 129 LIGSILKAKIKKIMNDLAGFIDLVAVNVQTGISIEAALKQVATDFKTLNPDLTYVMLRII 188
Query: 227 AELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLME 286
+ S + A ++ +R + QS +G+SI L L ++ R +L+
Sbjct: 189 RK-SEITGMSQALQDLSVSLPTTEIRMFCTVMQQSLNFGSSIYHQLIQLSTDIREIQLLA 247
Query: 287 AEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSII 323
E+K +L K+++P+I+F + +I++ + P ++ +
Sbjct: 248 IEEKLGTLSAKMSIPLILFIMFPIIILTLAPGVMKVF 284
>gi|330873645|gb|EGH07794.1| hypothetical protein PSYMP_04415 [Pseudomonas syringae pv.
morsprunorum str. M302280PT]
gi|330963434|gb|EGH63694.1| hypothetical protein PSYAC_02052 [Pseudomonas syringae pv.
actinidiae str. M302091]
Length = 294
Score = 148 bits (375), Expect = 9e-34, Method: Composition-based stats.
Identities = 59/311 (18%), Positives = 127/311 (40%), Gaps = 19/311 (6%)
Query: 18 ITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDS 77
+ +F+ +++ + +R+ + + +++R+ +I SL + +
Sbjct: 3 LVLGTFMFAAAVFLLLSGMARQRRNERLVAQRLRGQVVRESRIGSLLRLLGDT------- 55
Query: 78 KSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFG 137
++ ++I +D L G+R ++ ++ VPI + + I+
Sbjct: 56 --------RIGQRSISLDSETQVLLNRIGWRRATKRSLFAACQVGVPIALMSMVILAQVL 107
Query: 138 YDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESG 197
+ K +E PF A I +G+ P ++ Q+RQ + + LL I ESG
Sbjct: 108 FFKEIEQPF----IAPIFALGIGYLLPKRVLAAAAQRRQKQVVVEISTFIPLLRILFESG 163
Query: 198 ISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQA 257
++++QALR ++ + LS+E+ + + + +D + +
Sbjct: 164 MAVEQALRVLSNEGKDLLPVLSDEIRVVLTRVDSGLELGEELRKTAALLAVDELSDTCVI 223
Query: 258 LIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGP 317
L Q G SL L RL ++ + L K++V M++F P L++V+ GP
Sbjct: 224 LNQLIHQGGGALKSLLTLKQLIDDRRLTRLQEYISKLSAKMSVVMMVFLFPALLIVLAGP 283
Query: 318 AILSIIDTMKD 328
++I +
Sbjct: 284 GFIAISRALGS 294
>gi|28871970|ref|NP_794589.1| hypothetical protein PSPTO_4855 [Pseudomonas syringae pv. tomato
str. DC3000]
gi|213968012|ref|ZP_03396158.1| membrane protein [Pseudomonas syringae pv. tomato T1]
gi|301383672|ref|ZP_07232090.1| hypothetical protein PsyrptM_13608 [Pseudomonas syringae pv. tomato
Max13]
gi|302059959|ref|ZP_07251500.1| hypothetical protein PsyrptK_08205 [Pseudomonas syringae pv. tomato
K40]
gi|302131625|ref|ZP_07257615.1| hypothetical protein PsyrptN_09542 [Pseudomonas syringae pv. tomato
NCPPB 1108]
gi|28855223|gb|AAO58284.1| membrane protein, putative [Pseudomonas syringae pv. tomato str.
DC3000]
gi|213927355|gb|EEB60904.1| membrane protein [Pseudomonas syringae pv. tomato T1]
gi|331014704|gb|EGH94760.1| hypothetical protein PLA106_02330 [Pseudomonas syringae pv.
lachrymans str. M302278PT]
Length = 294
Score = 148 bits (375), Expect = 1e-33, Method: Composition-based stats.
Identities = 58/311 (18%), Positives = 128/311 (41%), Gaps = 19/311 (6%)
Query: 18 ITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDS 77
+ +F+ +++ + +R+ + + +++R+ +I SL + +
Sbjct: 3 LVLGTFMFAAAVFLLLSGMARQRRNERLVAQRLRGQVVRESRIGSLLRLLGDT------- 55
Query: 78 KSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFG 137
++ ++I +D L G+R ++ ++ VPI + + I+
Sbjct: 56 --------RIGQRSISLDSETQVLLNRIGWRRATKRSLFAACQVGVPIALMSMVILAQVL 107
Query: 138 YDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESG 197
+ K +E PF + A+ +G+ P ++ Q+RQ + + LL I ESG
Sbjct: 108 FFKDIEQPFIAPIFAL----GIGYLLPKRVLAAAAQRRQKKVVVEISTFIPLLRILFESG 163
Query: 198 ISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQA 257
++++QALR ++ + LS+E+ + + + +D + +
Sbjct: 164 MAVEQALRVLSNEGKDLLPVLSDEIRVVLTRVDSGLELGEELRKTAALLAVDELSDTCVI 223
Query: 258 LIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGP 317
L Q G SL L RL ++ + L K++V M++F P L++V+ GP
Sbjct: 224 LNQLIHQGGGALKSLLTLKQLIDDRRLTRLQEYISKLSAKMSVVMMVFLFPALLIVLAGP 283
Query: 318 AILSIIDTMKD 328
++I +
Sbjct: 284 GFIAISRALGS 294
>gi|320008843|gb|ADW03693.1| Type II secretion system F domain protein [Streptomyces
flavogriseus ATCC 33331]
Length = 295
Score = 148 bits (374), Expect = 1e-33, Method: Composition-based stats.
Identities = 55/225 (24%), Positives = 94/225 (41%), Gaps = 13/225 (5%)
Query: 97 NIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILI 156
K+ AG +++ R V + + + + +
Sbjct: 73 EKRRKIDMAGNPGGLTIDRYAARRAVYSALGGFAAFAML----------TSGKFFMALFM 122
Query: 157 GYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSV 216
G V I V+KR+ I R PD LD+L + V +G+ QAL RVAE G
Sbjct: 123 IAFGLFWGEVGIWAAVRKRRDDIDRTLPDFLDVLAVVVSAGLGFRQALDRVAEKYQG--- 179
Query: 217 PLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLV 276
P S+E+ +T+ ++ +R+ AF+ R + V AL Q + G I D+L +
Sbjct: 180 PWSDELRITLRQMDMGVSRRQAFDELRRRNDSEQVAMFVTALQQGEELGAPIVDTLIAIA 239
Query: 277 SETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILS 321
++ R A +KAA PK T+ + F +P ++++ +L
Sbjct: 240 NDMRRTDAQNARRKAAKAVPKATLMVTTFMIPATMILMGAAMLLG 284
>gi|261867450|ref|YP_003255372.1| TadC [Aggregatibacter actinomycetemcomitans D11S-1]
gi|261412782|gb|ACX82153.1| TadC [Aggregatibacter actinomycetemcomitans D11S-1]
Length = 288
Score = 148 bits (374), Expect = 1e-33, Method: Composition-based stats.
Identities = 53/277 (19%), Positives = 132/277 (47%), Gaps = 15/277 (5%)
Query: 47 SVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAG 106
+++ ++ ++++ + ++ D + +++ L+ +L++ N + L+ G
Sbjct: 23 ALSARKKFQYRKEVITGERPKDQDS----DEVAKNKSKQQIELELLLINNNPI--LKVLG 76
Query: 107 FRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSV 166
+ +++ + I+ L+ G+ +++ L +G + ++ P V
Sbjct: 77 IIDKN-------IKVKLLIMLLLFGVYYLYSLTDETTDSSSLLLGFLTILIIT-IVIPGV 128
Query: 167 WISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTI 226
I ++++ + I +DL+ + V++GISI+ AL++VA D + L+ ML I
Sbjct: 129 LIGSILKAKIKKIMNDLAGFIDLVAVNVQTGISIEAALKQVATDFKTLNPDLTYVMLRII 188
Query: 227 AELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLME 286
+ S + A ++ +R + QS +G+SI L L ++ R +L+
Sbjct: 189 RK-SEITGMSQALQDLSVSLPTTEIRMFCTVMQQSLNFGSSIYHQLIQLSTDIREIQLLA 247
Query: 287 AEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSII 323
E+K +L K+++P+I+F + +I++I+ P ++ +
Sbjct: 248 IEEKLGTLSAKMSIPLILFIMFPIIILILAPGVMRVF 284
>gi|293606486|ref|ZP_06688844.1| type II secretion system protein [Achromobacter piechaudii ATCC
43553]
gi|292815109|gb|EFF74232.1| type II secretion system protein [Achromobacter piechaudii ATCC
43553]
Length = 330
Score = 147 bits (372), Expect = 2e-33, Method: Composition-based stats.
Identities = 48/270 (17%), Positives = 105/270 (38%), Gaps = 3/270 (1%)
Query: 59 QITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGF-RSEYSLNILL 117
++ + R + + + + L L+ + AG+ + + + +
Sbjct: 58 AAAPVEGNPGRLSSAARVADAFGKRLSEGRLADTLLAAEDRKMVDMAGYANAGTARSRFV 117
Query: 118 VVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQS 177
R + I I+ ++ K L A +G+ P +S + +R+
Sbjct: 118 AARFGLAIALPIVAVL--IDLHKSLTNSSMGVFIAAFFGFAIGYMLPKWVVSRRLARRKR 175
Query: 178 SIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQV 237
P +DLL + G+SIDQ+++ + ++ LS E+ L R+
Sbjct: 176 MAGDELPLLIDLLRLLQGVGLSIDQSMQVLIKEFAQVLPVLSYELRLASEGYVRGRTREQ 235
Query: 238 AFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPK 297
+ D + + + Q D++G ++ + L R +R +E ++K A K
Sbjct: 236 SLARLATGFDNDDLSAICRLIAQVDQHGGAVQEPLNRFGERLRDKRRLELKEKVAKTTVK 295
Query: 298 LTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
+T MI+ LP L++V G ++++ +
Sbjct: 296 MTGVMIVTLLPALLIVTGGAGFIAVLRGLS 325
>gi|319779646|ref|YP_004130559.1| Type II/IV secretion system protein TadC [Taylorella equigenitalis
MCE9]
gi|317109670|gb|ADU92416.1| Type II/IV secretion system protein TadC [Taylorella equigenitalis
MCE9]
Length = 267
Score = 147 bits (372), Expect = 2e-33, Method: Composition-based stats.
Identities = 45/224 (20%), Positives = 107/224 (47%), Gaps = 8/224 (3%)
Query: 102 LRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGF 161
L +G ++++ + L+ + + I+F ++ ++W+ D + Y + + + ++
Sbjct: 51 LAKSGLSTKWTPHKLVGL-VAFVILFELVLVLWVILADLQILY-----LYILFIFIFITL 104
Query: 162 CAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEE 221
P +I + KR++ + +P LD+L + + SG + +L+ + + L +E
Sbjct: 105 LWPKAYIKRYISKRRTELSEIFPFFLDVLSVSLSSGQNFTMSLQYAFNSL--PNGVLKDE 162
Query: 222 MLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRS 281
+ TI E+ + A ++ R+ ++ V+ + Q+D+ G + + R S R
Sbjct: 163 LGFTIREMQAGKPKLEAIDDMAQRSDLNVVKQWVNNIKQADQLGLQLASAFRAQASYIRK 222
Query: 282 ERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDT 325
+R + AEK A K+ P++ F P +V++ P + I+++
Sbjct: 223 QRYLMAEKLAFEAPVKMLFPLVFFIFPCTFIVLLFPVFMQILES 266
>gi|255020083|ref|ZP_05292154.1| type II secretion system protein [Acidithiobacillus caldus ATCC
51756]
gi|254970445|gb|EET27936.1| type II secretion system protein [Acidithiobacillus caldus ATCC
51756]
Length = 337
Score = 147 bits (372), Expect = 2e-33, Method: Composition-based stats.
Identities = 48/224 (21%), Positives = 96/224 (42%), Gaps = 9/224 (4%)
Query: 101 KLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVG 160
+++ AG + + ++++ + L ++ R +L +
Sbjct: 119 RIQKAGLNYLITPRDFMALKILSALFALFFALLVYAAIGVF-------RWEFTLLGMVLT 171
Query: 161 FCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSE 220
P +W+ ++RQ I + P LD + + VE G+++ A++ + G PL
Sbjct: 172 SFYPDLWLVEQAKRRQKRILKDLPVYLDFITLMVEGGLNLTGAIQIAVDK--GPEGPLRN 229
Query: 221 EMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETR 280
E + + +L R F F +R M +R+ A+IQ++ G S+ L+ + R
Sbjct: 230 EFRIILRDLRSGMPRVEVFRRFGDRVAMQELRSLVTAIIQAEERGGSLAPVLKAQAEQRR 289
Query: 281 SERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIID 324
ER + AEK A KL P+I+F P++ +V+ + +
Sbjct: 290 EERFLRAEKAALEAPVKLLAPLIMFIFPIVFIVLTFVIYMKYVQ 333
>gi|71733529|ref|YP_276554.1| type II secretion system protein F domain [Pseudomonas syringae pv.
phaseolicola 1448A]
gi|257483343|ref|ZP_05637384.1| type II secretion system protein F domain [Pseudomonas syringae pv.
tabaci ATCC 11528]
gi|298488955|ref|ZP_07006978.1| Type II/IV secretion system protein TadC, associated with Flp pilus
assembly [Pseudomonas savastanoi pv. savastanoi NCPPB
3335]
gi|71554082|gb|AAZ33293.1| type II secretion system protein F domain protein [Pseudomonas
syringae pv. phaseolicola 1448A]
gi|298156453|gb|EFH97550.1| Type II/IV secretion system protein TadC, associated with Flp pilus
assembly [Pseudomonas savastanoi pv. savastanoi NCPPB
3335]
gi|320322734|gb|EFW78827.1| type II secretion system protein F domain [Pseudomonas syringae pv.
glycinea str. B076]
gi|320330481|gb|EFW86460.1| type II secretion system protein F domain [Pseudomonas syringae pv.
glycinea str. race 4]
gi|330887979|gb|EGH20640.1| type II secretion system, protein F domain [Pseudomonas syringae
pv. mori str. 301020]
gi|330989172|gb|EGH87275.1| type II secretion system protein F domain [Pseudomonas syringae pv.
lachrymans str. M301315]
gi|331012562|gb|EGH92618.1| type II secretion system protein, F domain [Pseudomonas syringae
pv. tabaci ATCC 11528]
Length = 294
Score = 147 bits (372), Expect = 2e-33, Method: Composition-based stats.
Identities = 56/276 (20%), Positives = 115/276 (41%), Gaps = 7/276 (2%)
Query: 56 RKQQITSLQKDSASSRL-RTRDSKSLRNFVK--KLNLKAILVDENIVNKLRAAGFRSEYS 112
R+++ L ++ R SL + ++ ++I +D L G+R
Sbjct: 23 RQRRNERLVARRLRGQVIRESRIGSLLRLLGDTRIGQRSISLDSETQMLLNRIGWRRASK 82
Query: 113 LNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLV 172
++ ++ VP+ +++ I+ K +E P + A + +G+ P ++ +
Sbjct: 83 RSLFAACQVGVPVGLMVVVIVAQLLLFKGVEQP----LIAPVFALGIGYLLPKRILAAVA 138
Query: 173 QKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFL 232
Q+RQ + + LL I ESG++++QALR ++ + LSEE+ + + +
Sbjct: 139 QRRQKQVVVEISTFIPLLRILFESGMAVEQALRVLSLEGKDLLPVLSEEIRVVLVRVDSG 198
Query: 233 PNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAA 292
+D + + L Q G SL L RL ++ +
Sbjct: 199 LELGEELRKTAALLAVDELSDTCVILNQLIHQGGGALKSLLTLKQLIDDRRLTRLQEYIS 258
Query: 293 SLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMKD 328
L K++V M++F P L++V+ GP ++I +
Sbjct: 259 KLSAKMSVVMMVFLFPALLIVLAGPGFIAISRALGS 294
>gi|187921509|ref|YP_001890541.1| type II secretion system protein [Burkholderia phytofirmans PsJN]
gi|187719947|gb|ACD21170.1| type II secretion system protein [Burkholderia phytofirmans PsJN]
Length = 293
Score = 147 bits (372), Expect = 2e-33, Method: Composition-based stats.
Identities = 49/197 (24%), Positives = 94/197 (47%), Gaps = 2/197 (1%)
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
+I ++ L+ ++ + +G+ P +W ++ ++R + I + P L
Sbjct: 95 IIASVLATLVALLLMLALGMFSALVLLGVAVLGYFYPRIWTRDVRRRRVARILKHLPIYL 154
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQ 247
D L + VE+G++I+ A+++ E G PL E + +L NR A +R +
Sbjct: 155 DFLTLAVEAGLNINGAIQKAVEK--GPEGPLRWEFEHVLRDLKSGLNRMEALYRMDDRLR 212
Query: 248 MDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFL 307
+ V N ++Q++R G+ + SLR + RSER AEK+A KL P+++F
Sbjct: 213 IKEVTNLVGTVVQAERMGSGLSKSLRFQSEQRRSERFQRAEKQAMEAPVKLVFPLLVFIF 272
Query: 308 PVLILVIIGPAILSIID 324
P+ +V+ P + +
Sbjct: 273 PITFIVLGFPIAMKFVQ 289
>gi|260892929|ref|YP_003239026.1| Type II secretion system F domain protein [Ammonifex degensii KC4]
gi|260865070|gb|ACX52176.1| Type II secretion system F domain protein [Ammonifex degensii KC4]
Length = 305
Score = 147 bits (371), Expect = 2e-33, Method: Composition-based stats.
Identities = 64/288 (22%), Positives = 128/288 (44%), Gaps = 12/288 (4%)
Query: 43 KRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLN---LKAILVDENIV 99
+R K ++ R + ++ L R K + +L L E
Sbjct: 24 RREKETSLCRRLADPDVEAIWREQELREPLSRRIFKPWLTKLGRLGGRFLPGGSRKEMWA 83
Query: 100 NKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYV 159
N L AG +N L ++++ + + +++ + PF + V+ +
Sbjct: 84 NLLAMAGHPWGLGVNEFLALKVLAALTGGMAFVLFFWHLT-----PFAAPLWGVVGW-LL 137
Query: 160 GFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLS 219
GF P + + +++RQ ++R P+ +DLL + VE+G+ + AL RV E + G PL
Sbjct: 138 GFLFPDFLLRSRIRRRQREVRRQLPEVIDLLTVSVEAGLGFEGALTRVVEKMDG---PLP 194
Query: 220 EEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSET 279
+E+ + E+ R+ A R ++ + + A+I +++ G S+ LR+ E
Sbjct: 195 QEICRALQEIRVGRPRREALREMAQRIGVEELLSFVGAVIMAEQMGVSLARVLRLQSQEI 254
Query: 280 RSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
R R +A++ A K+ +P+++ P +V++GPA+L I+
Sbjct: 255 RRRRRQQAQEAAFKAPVKMLLPLVLCIFPATFVVLLGPAVLRIMRFFG 302
>gi|221070078|ref|ZP_03546183.1| type II secretion system protein [Comamonas testosteroni KF-1]
gi|220715101|gb|EED70469.1| type II secretion system protein [Comamonas testosteroni KF-1]
Length = 317
Score = 147 bits (371), Expect = 3e-33, Method: Composition-based stats.
Identities = 72/322 (22%), Positives = 134/322 (41%), Gaps = 10/322 (3%)
Query: 9 FDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSV--AVEREILRKQQITSLQKD 66
+ + L + ++ A + + ++ + E+ K V A+ R T++
Sbjct: 1 METSRLLLMLSVAFLALAALIGAILIAYAHQRRERSSKVVQDALSRSGAAAANTTAVLSK 60
Query: 67 SASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPII 126
A L + LV + L G+ S + L+ R VV ++
Sbjct: 61 PADLLRSLNGDGDLPAHWLNTSFGKALVAQEDRILLSKCGWGSTRAQLQYLLARCVVSVL 120
Query: 127 FLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDA 186
L+L G L Y + +GF P + ++ ++R++S+ R P
Sbjct: 121 LLLLAAFVFSGSKHFLLY--------LFAAFTIGFLLPKWVLRSVARRRRASVARELPLL 172
Query: 187 LDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRT 246
+DLL + +G+S+DQ L+ + D G LS E+ L + S R+ +F
Sbjct: 173 VDLLGLLQGTGMSLDQTLQVIGSDFGNVMPVLSREIQLANQQYSRGGTRERSFARMSEVY 232
Query: 247 QMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFF 306
Q D + N T + Q DRYG ++ + LR+ R +R + ++ + K+T M++
Sbjct: 233 QSDNLANLTSLMTQIDRYGGAVQEPLRIFGERLREQRKAKMKEMIGKISVKMTGVMVLTL 292
Query: 307 LPVLILVIIGPAILSIIDTMKD 328
LP LI+V GP L+++ +
Sbjct: 293 LPALIIVTAGPGFLAVMKALGG 314
>gi|149188841|ref|ZP_01867131.1| hypothetical Flp pilus assembly protein TadC [Vibrio shilonii AK1]
gi|148837261|gb|EDL54208.1| hypothetical Flp pilus assembly protein TadC [Vibrio shilonii AK1]
Length = 283
Score = 146 bits (370), Expect = 3e-33, Method: Composition-based stats.
Identities = 43/227 (18%), Positives = 104/227 (45%), Gaps = 9/227 (3%)
Query: 96 ENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVIL 155
+ + KL AG+ ++ L + V + + + + + + +IL
Sbjct: 59 KELEQKLLDAGYYNKNLAKYYLPTKFAVAVCISLAILFLNIAVLYKVVAVVVVMITVIIL 118
Query: 156 IGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQS 215
+ + + I R P LD++ +CV++G++I+ + + +++
Sbjct: 119 PDIILDIKKKLMV--------RKISRNLPYVLDIMSVCVQTGMTIEASFDYLHKELAAFD 170
Query: 216 VPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVL 275
LS ++ T ++ + + A + NR V++ +IQ+ +YGTS+ + L L
Sbjct: 171 SDLSYQIKKT-SDAGKIHGIEKALNDLNNRLPAPEVQSFVLTIIQNLQYGTSVANILSDL 229
Query: 276 VSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
+ R +L++ E+K L K++VP+I+ + ++++I+ P ++ +
Sbjct: 230 AEDMRRIQLLKVEEKVGKLSAKMSVPLILLIMFPIVILILAPGVMQL 276
>gi|289625308|ref|ZP_06458262.1| type II secretion system protein F domain [Pseudomonas syringae pv.
aesculi str. NCPPB3681]
gi|289647833|ref|ZP_06479176.1| type II secretion system protein F domain [Pseudomonas syringae pv.
aesculi str. 2250]
gi|330867142|gb|EGH01851.1| type II secretion system, protein F domain [Pseudomonas syringae
pv. aesculi str. 0893_23]
gi|330871030|gb|EGH05739.1| type II secretion system, protein F domain [Pseudomonas syringae
pv. aesculi str. 0893_23]
Length = 294
Score = 146 bits (370), Expect = 3e-33, Method: Composition-based stats.
Identities = 55/276 (19%), Positives = 114/276 (41%), Gaps = 7/276 (2%)
Query: 56 RKQQITSLQKDSASSRL-RTRDSKSLRNFVK--KLNLKAILVDENIVNKLRAAGFRSEYS 112
R+++ L ++ R SL + ++ ++I +D L G+R
Sbjct: 23 RQRRNERLVARRLRGQVIRESRIGSLLRLLGDTRIGQRSISLDSETQMLLNRIGWRRASK 82
Query: 113 LNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLV 172
++ ++ VP+ +++ I+ K + P + A + +G+ P ++ +
Sbjct: 83 RSLFAACQVGVPVGLMVVVIVAQLLLFKGVGQP----LIAPVFALGIGYLLPKRILAAVA 138
Query: 173 QKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFL 232
Q+RQ + + LL I ESG++++QALR ++ + LSEE+ + + +
Sbjct: 139 QRRQKQVVVEISTFIPLLRILFESGMAVEQALRVLSLEGKDLLPVLSEEIRVVLVRVDSG 198
Query: 233 PNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAA 292
+D + + L Q G SL L RL ++ +
Sbjct: 199 LELGEELRKTAALLAVDELSDTCVILNQLIHQGGGALKSLLTLKQLIDDRRLTRLQEYIS 258
Query: 293 SLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMKD 328
L K++V M++F P L++V+ GP ++I +
Sbjct: 259 KLSAKMSVVMMVFLFPALLIVLAGPGFIAISRALGS 294
>gi|329935278|ref|ZP_08285244.1| type II secretion system F protein [Streptomyces griseoaurantiacus
M045]
gi|329305101|gb|EGG48960.1| type II secretion system F protein [Streptomyces griseoaurantiacus
M045]
Length = 296
Score = 146 bits (369), Expect = 4e-33, Method: Composition-based stats.
Identities = 53/226 (23%), Positives = 95/226 (42%), Gaps = 13/226 (5%)
Query: 96 ENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVIL 155
+ ++ AG +L+ R + ++++ +
Sbjct: 73 DAKRRRIDMAGNPGGLTLDRYAARRAFYGFFGAFMALVFL----------TTGHWLIALA 122
Query: 156 IGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQS 215
G A I ++ R+ I R PD LD+L + V +G+ QAL RVAE G
Sbjct: 123 TLAFGLLAADALIWQAIRDRKDVIDRTLPDFLDVLAVVVSAGLGFRQALDRVAERYEG-- 180
Query: 216 VPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVL 275
P ++E+ +T+ ++ +R+ AF+ R + V AL Q + G+ I D+L L
Sbjct: 181 -PWADELRITLRQMDMGVSRRQAFDELRRRNTSEQVAQFVSALQQGEELGSPIADTLIQL 239
Query: 276 VSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILS 321
++ R A ++AA PK T+ ++F LP +++I L
Sbjct: 240 ATDMRRTDAQNARRRAAKTIPKATMVTLVFMLPATMILIATGMFLG 285
>gi|328884729|emb|CCA57968.1| putative integral membrane protein [Streptomyces venezuelae ATCC
10712]
Length = 295
Score = 146 bits (369), Expect = 5e-33, Method: Composition-based stats.
Identities = 62/270 (22%), Positives = 110/270 (40%), Gaps = 19/270 (7%)
Query: 52 REILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEY 111
R L + DSA RL R S ++ + + A + ++ AG
Sbjct: 34 RLALEVGATRTGAVDSAVDRLGMRWSPAVLRLMGPKRVNA------VRRRIDLAGNPGGL 87
Query: 112 SLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNL 171
+++ R + G L + +L+ G V I +
Sbjct: 88 TIDRYGARR----------AVYGFLGVLGGLLMLSRGSFLVAVLLFAFGAFWTEVGIWSA 137
Query: 172 VQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSF 231
V+ R+ I+R PD LD+L + V +G+ QAL RVAE G P ++E+ +T+ ++
Sbjct: 138 VRIRKDQIERTLPDFLDVLAVVVSAGLGFRQALERVAEKYEG---PWADELRITLRQMDM 194
Query: 232 LPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKA 291
+R+ AF+ R + V AL Q + G I ++L + ++ R A +KA
Sbjct: 195 GVSRRQAFDELRRRNDSEQVAQFVTALQQGEELGAPIVETLIQIANDMRRTDAQNARRKA 254
Query: 292 ASLGPKLTVPMIIFFLPVLILVIIGPAILS 321
A PK T+ + +P ++++ L
Sbjct: 255 AKAVPKATMVITTLMVPATMILLGAGLFLG 284
>gi|152981972|ref|YP_001355002.1| Flp pilus assembly protein TadC [Janthinobacterium sp. Marseille]
gi|151282049|gb|ABR90459.1| Flp pilus assembly protein TadC [Janthinobacterium sp. Marseille]
Length = 317
Score = 146 bits (368), Expect = 5e-33, Method: Composition-based stats.
Identities = 51/239 (21%), Positives = 97/239 (40%), Gaps = 6/239 (2%)
Query: 89 LKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQL 148
L LV L G + R+++ I I + E Q
Sbjct: 79 LGKQLVAPEDRTLLDQCGVNDSRGKTLFFATRVLLGIGLPIFAWLLF------AEKSIQT 132
Query: 149 RVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVA 208
+ AV +G+ P + ++R+ P +DLL + G+SIDQ+L V
Sbjct: 133 LLLAVFFGFALGYMGPKWVMQIRARERRQQANEELPLLIDLLRLLQGVGMSIDQSLHVVE 192
Query: 209 EDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSI 268
+ L +E+ + + R+ + F + + + + + ++Q DRYG ++
Sbjct: 193 NEFSTSLPVLGKELQIAAQQYQNGRTREQSLRRFSSLFENEDMSAVARLIVQVDRYGGAV 252
Query: 269 GDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
L+ R +R ++ ++K L K+T M++ LP L+++ G L+II T+
Sbjct: 253 QQPLQQFSDRLREQRKLDMKEKVGKLTVKMTGVMVLALLPALLIITGGAGFLAIIRTLS 311
>gi|323529408|ref|YP_004231560.1| Type II secretion system F domain-containing protein [Burkholderia
sp. CCGE1001]
gi|323386410|gb|ADX58500.1| Type II secretion system F domain protein [Burkholderia sp.
CCGE1001]
Length = 319
Score = 146 bits (368), Expect = 6e-33, Method: Composition-based stats.
Identities = 70/232 (30%), Positives = 118/232 (50%), Gaps = 10/232 (4%)
Query: 89 LKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQL 148
K D + +L AG+RS + + + V+ ++ +LG+ + + F +
Sbjct: 77 PKEGWEDSPLRLRLMNAGWRSSTAAALYFAAKTVLALLLPLLGLAALMQMPSVNGQ-FAV 135
Query: 149 RVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVA 208
+ ++ +G+ P+ ++ +RQ +I +PDALDLL +CVE+G+ +D AL RVA
Sbjct: 136 SALILAMLAAIGYYVPNAVLARCRARRQRAIVEGFPDALDLLTVCVEAGLGMDAALMRVA 195
Query: 209 EDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSI 268
++ S ++ E+ L + EL ++ A NF RT +D + L+Q+DR+GTSI
Sbjct: 196 GEMQLASPEVASELQLMLLELRSGFTKEKALRNFALRTGVDDIDTFASMLVQADRFGTSI 255
Query: 269 GDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFF---------LPVLI 311
G SLRV+ R+ R M AE++AA + KL P+I P I
Sbjct: 256 GASLRVMSDTLRTRRRMRAEERAAKIALKLLFPLIFCIFPALMTVLMGPAFI 307
>gi|91775991|ref|YP_545747.1| type II secretion system protein [Methylobacillus flagellatus KT]
gi|91709978|gb|ABE49906.1| type II secretion system protein [Methylobacillus flagellatus KT]
Length = 300
Score = 146 bits (368), Expect = 6e-33, Method: Composition-based stats.
Identities = 42/254 (16%), Positives = 106/254 (41%), Gaps = 5/254 (1%)
Query: 76 DSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWI 135
++ + + +++L++ D I+ L AG++ + + V+R I +L +
Sbjct: 51 PARGIEHVIERLSILPSSKDPEILKLLVQAGYKGKARVVFNAVIR-----IGPVLTAVGT 105
Query: 136 FGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVE 195
+ + + + + + + + L +R+ I + L +L++ +
Sbjct: 106 LLVNLVQGQDLFHCLASALFGFALFYVGIRYLLRWLAARRRKMISKEITTFLYMLVMLFD 165
Query: 196 SGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNAT 255
SG+S++ +LR + E L++E+ +A + ++ A + + + A
Sbjct: 166 SGLSLEHSLRIMVEQASDIMPHLAQELERVLARIRAGQDQGKALMSMSQMLDIPELSEAV 225
Query: 256 QALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVII 315
L Q + G ++ DS+ + + ++ + L K+T+ M+IF P L++ I
Sbjct: 226 AMLKQVAQQGGNVRDSIMRYAALIEERQFSHLRERVSKLSAKMTIVMMIFMFPALMIFIA 285
Query: 316 GPAILSIIDTMKDH 329
GP + + +
Sbjct: 286 GPGFIGLGKALSGQ 299
>gi|238762413|ref|ZP_04623384.1| Type II secretion system protein [Yersinia kristensenii ATCC 33638]
gi|238699398|gb|EEP92144.1| Type II secretion system protein [Yersinia kristensenii ATCC 33638]
Length = 272
Score = 145 bits (367), Expect = 7e-33, Method: Composition-based stats.
Identities = 53/217 (24%), Positives = 106/217 (48%), Gaps = 3/217 (1%)
Query: 107 FRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSV 166
R + L + +L++ II L++ ++ + L VG ++LI + P
Sbjct: 56 IRLPFFLYNIAYFKLMIIIISLVVTVVLTALNLFSINLKNILIVGVIMLIMML--YLPKY 113
Query: 167 WISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTI 226
+ N++ R S+ ++ P +D+ CV+SG++ID +L A+ + LS ML
Sbjct: 114 IVKNIITSRNKSLLKSLPFFIDITAACVQSGMTIDSSLSYTAKKFELINADLSLIMLKVT 173
Query: 227 AELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLME 286
+ + + A + F+ + +R AL S +G ++ + L L + R +L+
Sbjct: 174 RR-AEINGLESAIKEFHQSSTELEIRMFCSALQYSISFGATVYEQLIKLSQDMREMQLLV 232
Query: 287 AEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSII 323
E+K + L KLT+P+ +F L I+++I P++L ++
Sbjct: 233 TEEKISKLTAKLTIPLFLFILIPFIILVISPSVLELL 269
>gi|260914307|ref|ZP_05920776.1| Flp pilus assembly protein TadC [Pasteurella dagmatis ATCC 43325]
gi|260631408|gb|EEX49590.1| Flp pilus assembly protein TadC [Pasteurella dagmatis ATCC 43325]
Length = 285
Score = 145 bits (367), Expect = 7e-33, Method: Composition-based stats.
Identities = 60/270 (22%), Positives = 128/270 (47%), Gaps = 12/270 (4%)
Query: 57 KQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNIL 116
K+++ ++ R R + + ++ K ++ L+ N LR G +
Sbjct: 27 KKKLERGREVLIGERPRDKSNNDVQKGKSKQQVELELLLINNNPILRFLGIVDKN----- 81
Query: 117 LVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQ 176
+++ + I+ +++G+ +++ L + A LI + P + +++++ +
Sbjct: 82 --IKVKLLIMLVLVGLYYLYS----LAQGSADWLTATALILVLTILIPGILTNSILKSKI 135
Query: 177 SSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQ 236
I P +DL+ + V++GISID AL++VA D + L+ ML I + S +
Sbjct: 136 KKIMVDLPGFIDLVAVNVQTGISIDAALKQVAIDFKKLNPDLTYVMLRIIRK-SEITGLS 194
Query: 237 VAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGP 296
A ++ VR L QS +G+SI L L ++ R +L+ E+K +L
Sbjct: 195 SALQDLSISLPTTEVRMFCSVLQQSLNFGSSIYSHLIQLSADIRELQLLTIEEKLGTLAA 254
Query: 297 KLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
K+++P+I+F + +I++I+ P I+ + +
Sbjct: 255 KMSIPLILFIMFPIIILILAPGIMRVFPNV 284
>gi|163856391|ref|YP_001630689.1| hypothetical protein Bpet2080 [Bordetella petrii DSM 12804]
gi|163260119|emb|CAP42420.1| putative membrane protein [Bordetella petrii]
Length = 290
Score = 145 bits (367), Expect = 7e-33, Method: Composition-based stats.
Identities = 55/239 (23%), Positives = 102/239 (42%), Gaps = 7/239 (2%)
Query: 89 LKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQL 148
L + + + + ++L G + L + + +P
Sbjct: 59 LLSWRLRDALAHRLAQTGLPPAVTAAHAAAAVAGAAACGAFLAGGLAWWLGTAVAWPAAG 118
Query: 149 RVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVA 208
GA+ + G+ P W S + +R+ I R P LD++ +C+ESG+ + AL++ A
Sbjct: 119 LAGALFMGGW-----PVAWASRRIGRRRQRIGRELPFVLDMMTLCIESGLGLHGALQQAA 173
Query: 209 EDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSI 268
+ G PL +E+ +A++ R A + +R VR+ AL Q+D G S+
Sbjct: 174 Q--HGPPGPLRQELHHALADMRAGMPRAAALKALADRADSPAVRSWIAALTQADSLGMSL 231
Query: 269 GDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
G LR ++ R++R AEK A K+ +P+I P +V+ P + + +
Sbjct: 232 GAVLRGHAAQCRTDRFQRAEKLAMEAPVKMLLPLIGCIFPCTFIVLAFPIAVQLWQAAQ 290
>gi|238750902|ref|ZP_04612399.1| Type II secretion system protein [Yersinia rohdei ATCC 43380]
gi|238710816|gb|EEQ03037.1| Type II secretion system protein [Yersinia rohdei ATCC 43380]
Length = 265
Score = 145 bits (367), Expect = 8e-33, Method: Composition-based stats.
Identities = 54/218 (24%), Positives = 112/218 (51%), Gaps = 3/218 (1%)
Query: 110 EYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWIS 169
+ L ++ + ++ ++ L++ +I + + + G + ++G F P + I
Sbjct: 49 PFILENIIYFKTLIIVVNLVILVILLSTGLININITVFIVFGLITIVGT--FFLPKIIIK 106
Query: 170 NLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAEL 229
N++ KR S+ ++ P +D+ CV+SG++ID AL A+ + LS M+ ++
Sbjct: 107 NILYKRTESVLKSLPFFIDITAACVQSGMTIDGALNYTAKKFKLINPDLSLIMIKM-SKR 165
Query: 230 SFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEK 289
+ + ++A + + + +R AL S +G+SI D L L E R +L+ +E+
Sbjct: 166 AEINGLELAIKELHQCSTAMEIRMFCSALQYSISFGSSIYDQLAKLSQEMREMQLLVSEE 225
Query: 290 KAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
K + L KLT P+ IF L I+++I P++L ++ ++
Sbjct: 226 KVSKLSTKLTFPLFIFILIPFIVLVISPSVLELLTHVQ 263
>gi|51597675|ref|YP_071866.1| hypothetical protein YPTB3377 [Yersinia pseudotuberculosis IP
32953]
gi|51590957|emb|CAH22615.1| Putative exported protein [Yersinia pseudotuberculosis IP 32953]
Length = 277
Score = 145 bits (366), Expect = 9e-33, Method: Composition-based stats.
Identities = 53/258 (20%), Positives = 115/258 (44%), Gaps = 6/258 (2%)
Query: 73 RTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGI 132
R+R + N K+ + + +K + + + ++ L V I+ IL I
Sbjct: 23 RSRRISVYNKINSREN-KSKEANNDTKDKPTVLSDFIKLPVFLSNILYLKVLIVIFILSI 81
Query: 133 IWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLI 192
+ I ++ + + +L P + I N + KR +++ ++ P +D+
Sbjct: 82 LTILAIFNVVNINQKTLLTIGLLSIISTLYLPKMIIKNALTKRTNNLLKSLPFFIDITAA 141
Query: 193 CVESGISIDQALRRVAEDIGGQSVPLSEEMLLTI--AELSFLPNRQVAFENFYNRTQMDC 250
CV+SG++I+ +L + + L M AE++ L N + +
Sbjct: 142 CVQSGMTIENSLNYTTQKFQTINTDLCLIMSKVTKRAEINGLENAIKELQYYSPAI---E 198
Query: 251 VRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVL 310
++ L S +G+++ + L L + R +L+ E+ + L KLT+P+ +F L
Sbjct: 199 MKMFCSTLQYSISFGSTVYEQLTHLSQDMREMQLLMTEESISKLSTKLTLPLFLFILIPF 258
Query: 311 ILVIIGPAILSIIDTMKD 328
+L++I P+IL +++ +K+
Sbjct: 259 VLLVISPSILELLNYVKN 276
>gi|317491688|ref|ZP_07950123.1| type II secretion system protein [Enterobacteriaceae bacterium
9_2_54FAA]
gi|316920122|gb|EFV41446.1| type II secretion system protein [Enterobacteriaceae bacterium
9_2_54FAA]
Length = 279
Score = 145 bits (366), Expect = 1e-32, Method: Composition-based stats.
Identities = 44/201 (21%), Positives = 100/201 (49%), Gaps = 1/201 (0%)
Query: 125 IIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWP 184
I +I G++ + + + ++ I + P++ ++ + R + A P
Sbjct: 77 ICGVIGGVLLVLNIVGIFSISMKALAMIMLFIFMIVLVLPAMMLNPAINTRIKLMLDALP 136
Query: 185 DALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYN 244
+DL+ +CV++G++++ +++ +AE L++ ++L + + + + + + Y
Sbjct: 137 YFVDLIAVCVQAGMTVESSVKFIAERSADLDKNLAD-LMLHLVKRAEVSGLEEGLMDLYR 195
Query: 245 RTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMII 304
M +R L QS YGTS+ ++L L + R +L+ +E+K L K++VP+I+
Sbjct: 196 SMDMTEMRMFCATLQQSVHYGTSLYENLMELSKDIRDMQLLNSEEKIGKLSAKMSVPLIL 255
Query: 305 FFLPVLILVIIGPAILSIIDT 325
F + + ++I P IL I+
Sbjct: 256 FIMFPITILIAAPGILRIMQN 276
>gi|153950588|ref|YP_001399590.1| type II secretion system protein [Yersinia pseudotuberculosis IP
31758]
gi|152962083|gb|ABS49544.1| type II secretion system protein [Yersinia pseudotuberculosis IP
31758]
Length = 277
Score = 145 bits (365), Expect = 1e-32, Method: Composition-based stats.
Identities = 48/219 (21%), Positives = 103/219 (47%), Gaps = 5/219 (2%)
Query: 112 SLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNL 171
+ + ++ L V I+ IL I+ I ++ + + +L P + I N
Sbjct: 61 PVVLSNILYLKVLIVIFILSILAILAIFNVVNINQKTLLTIGLLSIISTLYLPRMIIKNA 120
Query: 172 VQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTI--AEL 229
+ KR +++ ++ P +D+ CV+SG++I+ +L + + L M AE+
Sbjct: 121 LTKRTNTLLKSLPFFIDITAACVQSGMTIENSLNYTTQKFQTINTDLCLIMSKVTKRAEI 180
Query: 230 SFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEK 289
+ L N + + ++ L S +G+++ + L L + R +L+ E+
Sbjct: 181 NGLENAIKELQYYSPAI---EMKMFCSTLQYSLSFGSTVYEQLTHLSQDMREMQLLMTEE 237
Query: 290 KAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMKD 328
+ L KLT+P+ +F L +L++I P+IL +++ +K+
Sbjct: 238 SISKLSTKLTLPLFLFILIPFVLLVISPSILELLNYVKN 276
>gi|152983555|ref|YP_001350203.1| hypothetical protein PSPA7_4867 [Pseudomonas aeruginosa PA7]
gi|150958713|gb|ABR80738.1| hypothetical protein PSPA7_4867 [Pseudomonas aeruginosa PA7]
Length = 303
Score = 145 bits (365), Expect = 1e-32, Method: Composition-based stats.
Identities = 48/239 (20%), Positives = 102/239 (42%), Gaps = 4/239 (1%)
Query: 90 KAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLR 149
+ L+D L+ AG+ + + L+ + +L ++ + L
Sbjct: 67 RLQLMDSEARQLLQQAGWHASRHRTLY----LISVFLTPLLFVLLVLLARLLRAESEASH 122
Query: 150 VGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAE 209
++ +GF P + + + R++ I + L+ I ++G++++QALR V +
Sbjct: 123 AVPLLFAAGIGFLLPKQVLKHFAKARRALIAEEMILFVQLIRILFDAGLTVEQALRVVCQ 182
Query: 210 DIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIG 269
+ G + L+ E+ L +A + E R Q+D + + L Q R G S
Sbjct: 183 EGRGITPQLARELDLALARAGNGIDLAEELEALARRLQVDPLNDCCGVLRQMLRQGGSAR 242
Query: 270 DSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMKD 328
+L L RL +++ L K+++ M++ P L++V+ GP +++I +
Sbjct: 243 GTLLTLKQLFEDRRLTTLQERIGKLSAKMSLVMMVLLFPALLIVLAGPGVIAISKALGG 301
>gi|22127363|ref|NP_670786.1| hypothetical protein y3489 [Yersinia pestis KIM 10]
gi|45442765|ref|NP_994304.1| hypothetical protein YP_3003 [Yersinia pestis biovar Microtus str.
91001]
gi|108809095|ref|YP_653011.1| hypothetical protein YPA_3104 [Yersinia pestis Antiqua]
gi|108810710|ref|YP_646477.1| hypothetical protein YPN_0545 [Yersinia pestis Nepal516]
gi|145597782|ref|YP_001161858.1| hypothetical protein YPDSF_0472 [Yersinia pestis Pestoides F]
gi|150260282|ref|ZP_01917010.1| putative type II secretion system integral membrane protein
[Yersinia pestis CA88-4125]
gi|162421097|ref|YP_001604880.1| hypothetical protein YpAngola_A0262 [Yersinia pestis Angola]
gi|165925128|ref|ZP_02220960.1| type II secretion system protein [Yersinia pestis biovar Orientalis
str. F1991016]
gi|165939890|ref|ZP_02228429.1| type II secretion system protein [Yersinia pestis biovar Orientalis
str. IP275]
gi|166009023|ref|ZP_02229921.1| type II secretion system protein [Yersinia pestis biovar Antiqua
str. E1979001]
gi|166212095|ref|ZP_02238130.1| type II secretion system protein [Yersinia pestis biovar Antiqua
str. B42003004]
gi|167419193|ref|ZP_02310946.1| type II secretion system protein [Yersinia pestis biovar Orientalis
str. MG05-1020]
gi|167425195|ref|ZP_02316948.1| type II secretion system protein [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|167466380|ref|ZP_02331084.1| type II secretion system protein [Yersinia pestis FV-1]
gi|186896813|ref|YP_001873925.1| type II secretion system protein [Yersinia pseudotuberculosis
PB1/+]
gi|218927879|ref|YP_002345754.1| hypothetical protein YPO0688 [Yersinia pestis CO92]
gi|229837370|ref|ZP_04457533.1| Type II/IV secretion system protein TadC,associated with Flp pilus
assembly [Yersinia pestis Pestoides A]
gi|229840582|ref|ZP_04460741.1| Type II/IV secretion system protein TadC,associated with Flp pilus
assembly [Yersinia pestis biovar Orientalis str. PEXU2]
gi|229842868|ref|ZP_04463020.1| Type II/IV secretion system protein TadC,associated with Flp pilus
assembly [Yersinia pestis biovar Orientalis str. India
195]
gi|229900907|ref|ZP_04516031.1| Type II/IV secretion system protein TadC,associated with Flp pilus
assembly [Yersinia pestis Nepal516]
gi|270487717|ref|ZP_06204791.1| type II secretion system F domain protein [Yersinia pestis KIM D27]
gi|294502754|ref|YP_003566816.1| hypothetical protein YPZ3_0644 [Yersinia pestis Z176003]
gi|21960448|gb|AAM87037.1|AE013952_4 hypothetical [Yersinia pestis KIM 10]
gi|45437631|gb|AAS63181.1| putative exported protein [Yersinia pestis biovar Microtus str.
91001]
gi|108774358|gb|ABG16877.1| hypothetical protein YPN_0545 [Yersinia pestis Nepal516]
gi|108781008|gb|ABG15066.1| hypothetical protein YPA_3104 [Yersinia pestis Antiqua]
gi|115346490|emb|CAL19364.1| putative exported protein [Yersinia pestis CO92]
gi|145209478|gb|ABP38885.1| hypothetical protein YPDSF_0472 [Yersinia pestis Pestoides F]
gi|149289690|gb|EDM39767.1| putative type II secretion system integral membrane protein
[Yersinia pestis CA88-4125]
gi|162353912|gb|ABX87860.1| type II secretion system protein [Yersinia pestis Angola]
gi|165912201|gb|EDR30839.1| type II secretion system protein [Yersinia pestis biovar Orientalis
str. IP275]
gi|165923328|gb|EDR40479.1| type II secretion system protein [Yersinia pestis biovar Orientalis
str. F1991016]
gi|165992362|gb|EDR44663.1| type II secretion system protein [Yersinia pestis biovar Antiqua
str. E1979001]
gi|166206841|gb|EDR51321.1| type II secretion system protein [Yersinia pestis biovar Antiqua
str. B42003004]
gi|166963187|gb|EDR59208.1| type II secretion system protein [Yersinia pestis biovar Orientalis
str. MG05-1020]
gi|167055958|gb|EDR65739.1| type II secretion system protein [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|186699839|gb|ACC90468.1| type II secretion system protein [Yersinia pseudotuberculosis
PB1/+]
gi|229682246|gb|EEO78338.1| Type II/IV secretion system protein TadC,associated with Flp pilus
assembly [Yersinia pestis Nepal516]
gi|229690135|gb|EEO82192.1| Type II/IV secretion system protein TadC,associated with Flp pilus
assembly [Yersinia pestis biovar Orientalis str. India
195]
gi|229696948|gb|EEO86995.1| Type II/IV secretion system protein TadC,associated with Flp pilus
assembly [Yersinia pestis biovar Orientalis str. PEXU2]
gi|229705493|gb|EEO91503.1| Type II/IV secretion system protein TadC,associated with Flp pilus
assembly [Yersinia pestis Pestoides A]
gi|262364731|gb|ACY61288.1| hypothetical protein YPD8_0598 [Yersinia pestis D182038]
gi|270336221|gb|EFA46998.1| type II secretion system F domain protein [Yersinia pestis KIM D27]
gi|294353213|gb|ADE63554.1| hypothetical protein YPZ3_0644 [Yersinia pestis Z176003]
gi|320016749|gb|ADW00321.1| Type II/IV secretion system protein TadC,associated with Flp pilus
assembly [Yersinia pestis biovar Medievalis str. Harbin
35]
Length = 277
Score = 145 bits (365), Expect = 1e-32, Method: Composition-based stats.
Identities = 53/258 (20%), Positives = 115/258 (44%), Gaps = 6/258 (2%)
Query: 73 RTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGI 132
R+R + N K+ + + +K + + + ++ L V I+ IL I
Sbjct: 23 RSRRISVYNKINSREN-KSKEANNDTKDKPTVLSDFIKLPVFLSNILYLKVLIVIFILSI 81
Query: 133 IWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLI 192
+ I ++ + + +L P + I N + KR +++ ++ P +D+
Sbjct: 82 LTILAIFNVVNINQKTLLTIGLLSIISTLYLPRMIIKNALTKRTNNLLKSLPFFIDITAA 141
Query: 193 CVESGISIDQALRRVAEDIGGQSVPLSEEMLLTI--AELSFLPNRQVAFENFYNRTQMDC 250
CV+SG++I+ +L + + L M AE++ L N + +
Sbjct: 142 CVQSGMTIENSLNYTTQKFQTINTDLCLIMSKVTKRAEINGLENAIKELQYYSPAI---E 198
Query: 251 VRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVL 310
++ L S +G+++ + L L + R +L+ E+ + L KLT+P+ +F L
Sbjct: 199 MKMFCSTLQYSISFGSTVYEQLTHLSQDMREMQLLMTEESISKLSTKLTLPLFLFILIPF 258
Query: 311 ILVIIGPAILSIIDTMKD 328
+L++I P+IL +++ +K+
Sbjct: 259 VLLVISPSILELLNYVKN 276
>gi|330959999|gb|EGH60259.1| hypothetical protein PMA4326_15689 [Pseudomonas syringae pv.
maculicola str. ES4326]
Length = 294
Score = 144 bits (364), Expect = 2e-32, Method: Composition-based stats.
Identities = 48/243 (19%), Positives = 101/243 (41%), Gaps = 4/243 (1%)
Query: 86 KLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYP 145
++ ++I +D L G+R ++ ++ VP+ + + + + K +E P
Sbjct: 56 RVGQRSISLDSETQILLNRIGWRRASKRSLFAACQIGVPVGLMCVVALVQLLFFKNIEQP 115
Query: 146 FQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALR 205
+ A + VG+ P ++ ++RQ + + LL I ESG++++QALR
Sbjct: 116 ----LIAPVFALGVGYLLPKRVLAVAAKRRQKQVVLEISTFIPLLRILFESGMAVEQALR 171
Query: 206 RVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYG 265
++ + LS+E+ + + + +D + + L Q G
Sbjct: 172 VLSSEGKELLPVLSDEIRVVLTRVDSGLELGEELRKTAALLAVDELSDTCVILNQLIHQG 231
Query: 266 TSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDT 325
SL L RL ++ + L K+++ M+ F P L++V+ GP ++I
Sbjct: 232 GGALKSLLTLKQLIDDRRLTRLQEYISKLSAKMSMVMMAFLFPALLIVLAGPGFIAISRA 291
Query: 326 MKD 328
+
Sbjct: 292 LGG 294
>gi|330819179|ref|YP_004348041.1| type II secretion system protein [Burkholderia gladioli BSR3]
gi|327371174|gb|AEA62529.1| type II secretion system protein [Burkholderia gladioli BSR3]
Length = 293
Score = 144 bits (364), Expect = 2e-32, Method: Composition-based stats.
Identities = 54/209 (25%), Positives = 98/209 (46%), Gaps = 3/209 (1%)
Query: 116 LLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKR 175
L+ R + + FL I + +L + + L +G+ P +W+ ++ + R
Sbjct: 84 LMTARQFIALSFLSAAIASLIAVSAMLALD-SFSLLVLPLAALLGYSYPRIWVRDVRRAR 142
Query: 176 QSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNR 235
+I++ P LD L + VE+G++I+ A+++ E G L E + +L NR
Sbjct: 143 VVAIRKQLPVYLDFLTLAVEAGLNINGAIQKAVEK--GPDGALRSEFEHVLRDLKSGLNR 200
Query: 236 QVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLG 295
A F R + + N A+IQ++R G+ + +LR + R+ER AEK A
Sbjct: 201 ADALRRFDERQDIKEITNFVGAVIQAERMGSGLAGTLRFQSEQRRAERFQRAEKLAMEAP 260
Query: 296 PKLTVPMIIFFLPVLILVIIGPAILSIID 324
KL P+++F PV +V+ P + +
Sbjct: 261 VKLVFPLMMFIFPVTFVVLGFPIAMRFVQ 289
>gi|238789152|ref|ZP_04632940.1| Type II secretion system protein [Yersinia frederiksenii ATCC
33641]
gi|238722684|gb|EEQ14336.1| Type II secretion system protein [Yersinia frederiksenii ATCC
33641]
Length = 264
Score = 144 bits (364), Expect = 2e-32, Method: Composition-based stats.
Identities = 49/207 (23%), Positives = 101/207 (48%), Gaps = 5/207 (2%)
Query: 123 VPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRA 182
+ II I+ ++E + ++ P V I+ ++ +R S+ ++
Sbjct: 59 LIIILTSFIIVIPLLLTNIIETNIDTFIIIGLITLMTTLYLPKVLINKVIIRRTESVLKS 118
Query: 183 WPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTI--AELSFLPNRQVAFE 240
P +D+ CV+SG++ID +L A+ + LS M+ I AE++ L + A +
Sbjct: 119 LPFFIDITAACVQSGMTIDNSLSYAAKKFELINHDLSLIMIRMIKRAEINGLES---AIK 175
Query: 241 NFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV 300
++ + ++ AL S +G+S+ D L L + R +L+ E++ + L KLT
Sbjct: 176 ELHHSSNALEIKMFCSALQYSISFGSSVYDQLINLSQDMREMQLLVTEERISKLSAKLTF 235
Query: 301 PMIIFFLPVLILVIIGPAILSIIDTMK 327
P+ +F L ++++I P++L I+ ++
Sbjct: 236 PLFLFILIPFVVLVISPSVLEILAYVQ 262
>gi|49084732|gb|AAT51226.1| PA4300 [synthetic construct]
Length = 304
Score = 144 bits (364), Expect = 2e-32, Method: Composition-based stats.
Identities = 57/304 (18%), Positives = 127/304 (41%), Gaps = 10/304 (3%)
Query: 27 LIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRN--FV 84
LI+A ++ ++G L + L ++++ +L S+R ++ + + +V
Sbjct: 6 LIFAALLMAVGGALLLLLQARNGSREQRLIERRLGALANPGGSTRWLAGMTERMDDSFWV 65
Query: 85 KKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEY 144
++L L +D L+ AG+ + L+ + +L ++ + L
Sbjct: 66 RRLQL----MDSEARQLLQQAGWHESRYRTLY----LISVFLTPLLFVLLVLLVKLLRAE 117
Query: 145 PFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQAL 204
++ +GF P + + + R++ I + L+ I ++G++++Q L
Sbjct: 118 SEASYAVPLLFAAGIGFLLPKQVLKHFAKARRALIADEMILFVQLIRILFDAGLTVEQTL 177
Query: 205 RRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRY 264
R V + G + L+ E+ L + + E R Q+D + + L Q R
Sbjct: 178 RVVCLEGRGITPQLARELDLALTRADNGIDLAEELEALARRLQVDPLNDCCGVLRQMLRQ 237
Query: 265 GTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIID 324
G S +L L RL +++ L K+++ M++ P L++V+ GP +++I
Sbjct: 238 GGSARSTLLTLKQLFEDRRLTTLQERIGKLSAKMSLVMMVLLFPALLIVLAGPGVIAITK 297
Query: 325 TMKD 328
+
Sbjct: 298 ALGG 301
>gi|46143337|ref|ZP_00204444.1| COG2064: Flp pilus assembly protein TadC [Actinobacillus
pleuropneumoniae serovar 1 str. 4074]
gi|126208032|ref|YP_001053257.1| tight adherence protein C [Actinobacillus pleuropneumoniae L20]
gi|126096824|gb|ABN73652.1| tight adherence protein C [Actinobacillus pleuropneumoniae serovar
5b str. L20]
Length = 281
Score = 144 bits (363), Expect = 2e-32, Method: Composition-based stats.
Identities = 53/252 (21%), Positives = 122/252 (48%), Gaps = 16/252 (6%)
Query: 75 RDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIW 134
D+ +++ L+ +LV++N + K G + + + L++ ++
Sbjct: 45 EDNSQKGKTKQQIELELLLVNKNPLLKFL--GLVDKN-----------IKVKLLVIALLT 91
Query: 135 IFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICV 194
+ Y + L AV+++ + F PS+ I +++ + I P +DL+ + V
Sbjct: 92 LINYIVSDDQTTFLLGCAVVVVLAIMF--PSITIGVILKSKIKRIMNDIPGFIDLVAVNV 149
Query: 195 ESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNA 254
++GISI+ A ++VA D + L+ +L I + + L + A ++ +R
Sbjct: 150 QTGISIEAAFKQVAIDFEHLNADLTYVILRIIRK-AELTSLSTALQDMAISLPTKEIRMF 208
Query: 255 TQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVI 314
+ QS +G+S+ + L L ++ R +L+ E+K +L K+++P+I+F + +I++I
Sbjct: 209 CTVMQQSLNFGSSLYEHLTQLSADIREMQLLVMEEKLGTLSAKMSIPLILFIMFPIIILI 268
Query: 315 IGPAILSIIDTM 326
+ P + ++ +
Sbjct: 269 VAPGAMRVLPNV 280
>gi|330953057|gb|EGH53317.1| type II secretion system protein [Pseudomonas syringae Cit 7]
Length = 294
Score = 144 bits (363), Expect = 2e-32, Method: Composition-based stats.
Identities = 56/276 (20%), Positives = 116/276 (42%), Gaps = 7/276 (2%)
Query: 56 RKQQITSLQKDSASSRL-RTRDSKSLRNFVK--KLNLKAILVDENIVNKLRAAGFRSEYS 112
R+++ L ++ R SL + ++ ++I +D L G+R
Sbjct: 23 RQRRNERLVAKRLRGQVIRESRIGSLLRLLGDTRIGQRSISLDSETQILLNRIGWRRASK 82
Query: 113 LNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLV 172
++ ++ VP+ +++ I+ + K ++ P + A I VG+ P ++
Sbjct: 83 RSLFAACQVGVPVGLMVMVILGQLLFFKGVQQP----LIAPIFALGVGYLLPKRILAAAA 138
Query: 173 QKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFL 232
++RQ + + LL I ESG++++QALR ++ + LSEE+ + + +
Sbjct: 139 RRRQKQVVVEISTFIPLLRILFESGMAVEQALRVLSNEGKDLLPVLSEEIRVVLVRVDSG 198
Query: 233 PNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAA 292
+D + + L Q G SL +L RL ++ +
Sbjct: 199 LELGEELRKTAALLAVDELSDTCVILNQLIHQGGGALKSLLMLKQLIDDRRLTRLQEYIS 258
Query: 293 SLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMKD 328
L K++V M++F P L++V+ GP ++I +
Sbjct: 259 KLSAKMSVVMMVFLFPALLIVLAGPGFMAISRALGS 294
>gi|297581613|ref|ZP_06943535.1| flp pilus assembly protein TadC [Vibrio cholerae RC385]
gi|297534020|gb|EFH72859.1| flp pilus assembly protein TadC [Vibrio cholerae RC385]
Length = 305
Score = 144 bits (363), Expect = 2e-32, Method: Composition-based stats.
Identities = 48/251 (19%), Positives = 122/251 (48%), Gaps = 3/251 (1%)
Query: 77 SKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIF 136
++ + + + + L AG S+ +L+ + +L++ ++ +L + W +
Sbjct: 58 TRHWLAVLGGYYPTSDTEKKRLTQMLEQAGIYSKDALDKVRGAKLLLGLLTAMLALGWQW 117
Query: 137 GYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVES 196
+L + + ++ +G P + ++ + ++ DA+DL++I +E+
Sbjct: 118 SKGELFT---AMTLTMALVGYVLGSNLPEYGLRRQSKQAKQRQQQIVADAMDLMVISIEA 174
Query: 197 GISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQ 256
G+S+D+AL RV + L+++ L T AE+ L + + + RT + +
Sbjct: 175 GLSLDRALERVGHYLLDVEPMLAKQFLRTHAEIQVLGDTALCMKKLAWRTGLQELERCAA 234
Query: 257 ALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIG 316
L + RYG+ + +++R + + R R M +++A L ++T+ + F + L+++II
Sbjct: 235 TLAMAQRYGSPLAETMRNISQDARQMRKMALQEQAGKLPGRITLIQMAFIMLPLLVLIIA 294
Query: 317 PAILSIIDTMK 327
P + ++++++
Sbjct: 295 PTLNVLLESLR 305
>gi|296390999|ref|ZP_06880474.1| TadC [Pseudomonas aeruginosa PAb1]
gi|313106819|ref|ZP_07793031.1| putative pilus assembly protein [Pseudomonas aeruginosa 39016]
gi|310879533|gb|EFQ38127.1| putative pilus assembly protein [Pseudomonas aeruginosa 39016]
Length = 303
Score = 144 bits (363), Expect = 2e-32, Method: Composition-based stats.
Identities = 56/304 (18%), Positives = 127/304 (41%), Gaps = 10/304 (3%)
Query: 27 LIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRN--FV 84
LI+A ++ ++G L + L ++++ +L S+R ++ + + +V
Sbjct: 6 LIFAALLMAVGGALLLLLQARNGSREQRLIERRLGALANPGGSTRWLAGMTERMDDSFWV 65
Query: 85 KKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEY 144
++L L +D L+ AG+ + L+ + +L ++ + L
Sbjct: 66 RRLQL----MDSEARQLLQQAGWHESRYRTLY----LISVFLTPLLFVLLVLLVKLLRAE 117
Query: 145 PFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQAL 204
++ +GF P + + + R++ I + L+ I ++G++++Q L
Sbjct: 118 SEASYAVPLLFAAGIGFLLPKQVLKHFAKARRALIADEMILFVQLIRILFDAGLTVEQTL 177
Query: 205 RRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRY 264
R V + G + L+ E+ L + + + R Q+D + + L Q R
Sbjct: 178 RVVCLEGRGITPQLARELDLALTRADNGIDLAEELDALARRLQVDPLNDCCGVLRQMLRQ 237
Query: 265 GTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIID 324
G S +L L RL +++ L K+++ M++ P L++V+ GP +++I
Sbjct: 238 GGSARSTLLTLKQLFEDRRLTTLQERIGKLSAKMSLVMMVLLFPALLIVLAGPGVIAITK 297
Query: 325 TMKD 328
+
Sbjct: 298 ALGG 301
>gi|15599496|ref|NP_252990.1| TadC [Pseudomonas aeruginosa PAO1]
gi|107100116|ref|ZP_01364034.1| hypothetical protein PaerPA_01001137 [Pseudomonas aeruginosa PACS2]
gi|116052334|ref|YP_792645.1| hypothetical protein PA14_55860 [Pseudomonas aeruginosa UCBPP-PA14]
gi|218893392|ref|YP_002442261.1| TadC [Pseudomonas aeruginosa LESB58]
gi|254239030|ref|ZP_04932353.1| hypothetical protein PACG_05207 [Pseudomonas aeruginosa C3719]
gi|254244889|ref|ZP_04938211.1| hypothetical protein PA2G_05762 [Pseudomonas aeruginosa 2192]
gi|9950522|gb|AAG07688.1|AE004846_5 TadC [Pseudomonas aeruginosa PAO1]
gi|115587555|gb|ABJ13570.1| putative pilus assembly protein [Pseudomonas aeruginosa UCBPP-PA14]
gi|126170961|gb|EAZ56472.1| hypothetical protein PACG_05207 [Pseudomonas aeruginosa C3719]
gi|126198267|gb|EAZ62330.1| hypothetical protein PA2G_05762 [Pseudomonas aeruginosa 2192]
gi|218773620|emb|CAW29434.1| TadC [Pseudomonas aeruginosa LESB58]
Length = 303
Score = 144 bits (363), Expect = 2e-32, Method: Composition-based stats.
Identities = 57/304 (18%), Positives = 127/304 (41%), Gaps = 10/304 (3%)
Query: 27 LIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRN--FV 84
LI+A ++ ++G L + L ++++ +L S+R ++ + + +V
Sbjct: 6 LIFAALLMAVGGALLLLLQARNGSREQRLIERRLGALANPGGSTRWLAGMTERMDDSFWV 65
Query: 85 KKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEY 144
++L L +D L+ AG+ + L+ + +L ++ + L
Sbjct: 66 RRLQL----MDSEARQLLQQAGWHESRYRTLY----LISVFLTPLLFVLLVLLVKLLRAE 117
Query: 145 PFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQAL 204
++ +GF P + + + R++ I + L+ I ++G++++Q L
Sbjct: 118 SEASYAVPLLFAAGIGFLLPKQVLKHFAKARRALIADEMILFVQLIRILFDAGLTVEQTL 177
Query: 205 RRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRY 264
R V + G + L+ E+ L + + E R Q+D + + L Q R
Sbjct: 178 RVVCLEGRGITPQLARELDLALTRADNGIDLAEELEALARRLQVDPLNDCCGVLRQMLRQ 237
Query: 265 GTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIID 324
G S +L L RL +++ L K+++ M++ P L++V+ GP +++I
Sbjct: 238 GGSARSTLLTLKQLFEDRRLTTLQERIGKLSAKMSLVMMVLLFPALLIVLAGPGVIAITK 297
Query: 325 TMKD 328
+
Sbjct: 298 ALGG 301
>gi|165975969|ref|YP_001651562.1| Flp pilus assembly protein [Actinobacillus pleuropneumoniae serovar
3 str. JL03]
gi|190149860|ref|YP_001968385.1| tight adherence protein C [Actinobacillus pleuropneumoniae serovar
7 str. AP76]
gi|303251577|ref|ZP_07337751.1| tight adherence protein C [Actinobacillus pleuropneumoniae serovar
6 str. Femo]
gi|303252182|ref|ZP_07338350.1| tight adherence protein C [Actinobacillus pleuropneumoniae serovar
2 str. 4226]
gi|307245407|ref|ZP_07527495.1| hypothetical protein appser1_6120 [Actinobacillus pleuropneumoniae
serovar 1 str. 4074]
gi|307247522|ref|ZP_07529567.1| hypothetical protein appser2_5180 [Actinobacillus pleuropneumoniae
serovar 2 str. S1536]
gi|307249754|ref|ZP_07531732.1| hypothetical protein appser4_5560 [Actinobacillus pleuropneumoniae
serovar 4 str. M62]
gi|307252110|ref|ZP_07534009.1| hypothetical protein appser6_6280 [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
gi|307254362|ref|ZP_07536200.1| hypothetical protein appser9_6100 [Actinobacillus pleuropneumoniae
serovar 9 str. CVJ13261]
gi|307256569|ref|ZP_07538350.1| hypothetical protein appser10_5740 [Actinobacillus pleuropneumoniae
serovar 10 str. D13039]
gi|307258820|ref|ZP_07540552.1| hypothetical protein appser11_6180 [Actinobacillus pleuropneumoniae
serovar 11 str. 56153]
gi|307260999|ref|ZP_07542681.1| hypothetical protein appser12_5660 [Actinobacillus pleuropneumoniae
serovar 12 str. 1096]
gi|307263184|ref|ZP_07544805.1| hypothetical protein appser13_6060 [Actinobacillus pleuropneumoniae
serovar 13 str. N273]
gi|165876070|gb|ABY69118.1| Flp pilus assembly protein [Actinobacillus pleuropneumoniae serovar
3 str. JL03]
gi|189914991|gb|ACE61243.1| tight adherence protein C [Actinobacillus pleuropneumoniae serovar
7 str. AP76]
gi|302648965|gb|EFL79153.1| tight adherence protein C [Actinobacillus pleuropneumoniae serovar
2 str. 4226]
gi|302649575|gb|EFL79757.1| tight adherence protein C [Actinobacillus pleuropneumoniae serovar
6 str. Femo]
gi|306853748|gb|EFM85965.1| hypothetical protein appser1_6120 [Actinobacillus pleuropneumoniae
serovar 1 str. 4074]
gi|306856025|gb|EFM88183.1| hypothetical protein appser2_5180 [Actinobacillus pleuropneumoniae
serovar 2 str. S1536]
gi|306858169|gb|EFM90247.1| hypothetical protein appser4_5560 [Actinobacillus pleuropneumoniae
serovar 4 str. M62]
gi|306860410|gb|EFM92424.1| hypothetical protein appser6_6280 [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
gi|306862661|gb|EFM94617.1| hypothetical protein appser9_6100 [Actinobacillus pleuropneumoniae
serovar 9 str. CVJ13261]
gi|306864979|gb|EFM96881.1| hypothetical protein appser10_5740 [Actinobacillus pleuropneumoniae
serovar 10 str. D13039]
gi|306867171|gb|EFM99027.1| hypothetical protein appser11_6180 [Actinobacillus pleuropneumoniae
serovar 11 str. 56153]
gi|306869301|gb|EFN01096.1| hypothetical protein appser12_5660 [Actinobacillus pleuropneumoniae
serovar 12 str. 1096]
gi|306871546|gb|EFN03269.1| hypothetical protein appser13_6060 [Actinobacillus pleuropneumoniae
serovar 13 str. N273]
Length = 281
Score = 143 bits (362), Expect = 2e-32, Method: Composition-based stats.
Identities = 53/252 (21%), Positives = 122/252 (48%), Gaps = 16/252 (6%)
Query: 75 RDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIW 134
D+ +++ L+ +LV++N + K G + + + L++ ++
Sbjct: 45 EDNSQKGKTKQQIELELLLVNKNPLLKFL--GLVDKN-----------IKVKLLVIALLT 91
Query: 135 IFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICV 194
+ Y + L AV+++ + F PS+ I +++ + I P +DL+ + V
Sbjct: 92 LINYIVSDDQTTFLLGCAVVVVLAIMF--PSITIGVILKSKIKRIMNDIPGFIDLVAVNV 149
Query: 195 ESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNA 254
++GISI+ A ++VA D + L+ +L I + + L + A ++ +R
Sbjct: 150 QTGISIEAAFKQVAIDFEHLNADLTYVILRIIRK-AELTSLSAALQDMAISLPTKEIRMF 208
Query: 255 TQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVI 314
+ QS +G+S+ + L L ++ R +L+ E+K +L K+++P+I+F + +I++I
Sbjct: 209 CTVMQQSLNFGSSLYEHLTQLSADIREMQLLVMEEKLGTLSAKMSIPLILFIMFPIIILI 268
Query: 315 IGPAILSIIDTM 326
+ P + ++ +
Sbjct: 269 VAPGAMRVLPNV 280
>gi|304311188|ref|YP_003810786.1| type II secretion system protein [gamma proteobacterium HdN1]
gi|301796921|emb|CBL45134.1| type II secretion system protein [gamma proteobacterium HdN1]
Length = 319
Score = 143 bits (362), Expect = 3e-32, Method: Composition-based stats.
Identities = 50/239 (20%), Positives = 108/239 (45%), Gaps = 6/239 (2%)
Query: 84 VKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLE 143
V+ L E I N+L + G R + ++ + + + G I ++ + +
Sbjct: 72 VEFSKLIKPAKRERISNRLSSGGLRYAILPEEFMAMKYICAV---VAGGITVWSLLTMPD 128
Query: 144 YPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQA 203
+ ++ L VGF P +W+S+ + +R+ + +P LDLL++ + +G++ A
Sbjct: 129 MKAEFKLLLYPL-ALVGFFYPDIWLSDQINRRRRITLKEFPFMLDLLVLGMRAGLNYAAA 187
Query: 204 LRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDR 263
L E + + + +E + E+ +R+ A +R ++ + N A+ Q +
Sbjct: 188 LGHAIEAM--PNGVIRDEFSKVLREIRAGKSRREALLTLADRMNLEAISNFVAAVNQVEE 245
Query: 264 YGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
G I L V + R+ER AE A ++ +PM++F P++ +++ I+ +
Sbjct: 246 TGGEIVSVLMVQAEQRRNERFTAAEIAANKAPIRMLIPMMLFLFPIIFMLLTFIIIVKL 304
>gi|325518827|gb|EGC98402.1| type II secretion system protein [Burkholderia sp. TJI49]
Length = 187
Score = 143 bits (362), Expect = 3e-32, Method: Composition-based stats.
Identities = 60/175 (34%), Positives = 107/175 (61%)
Query: 152 AVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDI 211
++++ +G P+V ++ + RQ +I +PDALDLL +CVE+G+ +D AL +V++++
Sbjct: 4 ILVVLAAIGNYVPNVMLARRIAARQRAIFEDFPDALDLLTVCVEAGLGLDAALMKVSDEL 63
Query: 212 GGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDS 271
+S ++ E+ L + E+ ++ A N RT ++ V + LIQ+DR+GTS+ +S
Sbjct: 64 HFRSAVVASELALLLLEMRSGFTKETALRNLALRTGVEDVESFCTMLIQADRFGTSVAES 123
Query: 272 LRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
LRVL R+ R M AE++AA + KL P+I P L+ V++GPA++ + +
Sbjct: 124 LRVLSDMLRTRRRMRAEERAAKIALKLLFPLIFCVFPALMGVLLGPALIHVYRVL 178
>gi|238782877|ref|ZP_04626906.1| Type II secretion system protein [Yersinia bercovieri ATCC 43970]
gi|238716300|gb|EEQ08283.1| Type II secretion system protein [Yersinia bercovieri ATCC 43970]
Length = 264
Score = 143 bits (361), Expect = 4e-32, Method: Composition-based stats.
Identities = 44/187 (23%), Positives = 91/187 (48%), Gaps = 1/187 (0%)
Query: 142 LEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISID 201
+ +G + P V I ++ +R SI ++ P +D+ CV+SG++ID
Sbjct: 78 ITINLNSLIGIGFITILATLYLPKVMIKKIIARRVESILKSLPFFIDITAACVQSGMTID 137
Query: 202 QALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQS 261
+L A + LS ++L +A+ + + + A + + + ++ L S
Sbjct: 138 SSLSYAARKFELINPDLSL-IILKMAKRAEINGLESAIKELHQCSTATEIKMFCSTLQYS 196
Query: 262 DRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILS 321
+G+++ D L L + R +L+ E+K + L KLT+P+ IF L ++++I P++L
Sbjct: 197 ISFGSTVYDQLIKLSQDIREMQLLVTEEKISKLSTKLTLPLFIFILIPFVVLVISPSVLE 256
Query: 322 IIDTMKD 328
+I ++
Sbjct: 257 LIAYVQQ 263
>gi|261856881|ref|YP_003264164.1| type II secretion system F domain protein [Halothiobacillus
neapolitanus c2]
gi|261837350|gb|ACX97117.1| Type II secretion system F domain protein [Halothiobacillus
neapolitanus c2]
Length = 298
Score = 143 bits (361), Expect = 4e-32, Method: Composition-based stats.
Identities = 54/209 (25%), Positives = 100/209 (47%), Gaps = 5/209 (2%)
Query: 96 ENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVIL 155
E + L+ AG + L +R+V +++ W+ L + L ++L
Sbjct: 71 EKAHHTLQTAGQDFVLNPEQLYGLRVVG--AGIVVAFFWLI-LAMLHKQSASLFAMTLVL 127
Query: 156 IGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQS 215
+G+ PS+W++ + RQ + + P LD +++ VE+G++I + + + G
Sbjct: 128 GAVLGWLYPSLWLTERRKHRQRLVIKDLPVFLDFIVMAVEAGLNITGGIEQAT--LKGPK 185
Query: 216 VPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVL 275
PL++E + ++ R A + R M + + T LIQ+DR G S+G SLRV
Sbjct: 186 GPLAQEFRRLLRDMRSGLARAEALKRMAERMDMPQISSFTGTLIQADRVGASLGASLRVQ 245
Query: 276 VSETRSERLMEAEKKAASLGPKLTVPMII 304
+ R ER + AEK A K+ +P+++
Sbjct: 246 ADQRREERFLRAEKLALEAPVKMMLPLVM 274
>gi|171921006|gb|ACB59189.1| TadC [Actinobacillus suis ATCC 33415]
Length = 281
Score = 143 bits (361), Expect = 4e-32, Method: Composition-based stats.
Identities = 42/195 (21%), Positives = 97/195 (49%), Gaps = 1/195 (0%)
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
+L I + + L+ + ++ + PS+ I +++ + I P +D
Sbjct: 84 MLVIALLTLINYLISEDQTTFLLGCAVVVVLAIMLPSITIGIILKSKIKRIMNDIPGFID 143
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
L+ + V++GISI+ A ++VA D + L+ +L + + + L + A ++
Sbjct: 144 LVAVNVQTGISIEAAFKQVAIDFEHLNADLTYVILRIMRK-AELTSLSAALQDMAISLPT 202
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP 308
+R + QS +G+S+ + L L ++ R +L+ E+K +L K+++P+I+F +
Sbjct: 203 KEIRMFCTVMQQSLNFGSSLYEHLTQLSADIREMQLLVMEEKLGTLSAKMSIPLILFIMF 262
Query: 309 VLILVIIGPAILSII 323
+I++I+ P + ++
Sbjct: 263 PIIILIVAPGAMRVL 277
>gi|290957844|ref|YP_003489026.1| type II secretion system F protein [Streptomyces scabiei 87.22]
gi|260647370|emb|CBG70475.1| putative type II secretion system F protein [Streptomyces scabiei
87.22]
Length = 300
Score = 143 bits (360), Expect = 5e-32, Method: Composition-based stats.
Identities = 58/226 (25%), Positives = 98/226 (43%), Gaps = 13/226 (5%)
Query: 96 ENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVIL 155
E ++ AG +LN R V +G++++ R
Sbjct: 77 EAKRRRIDMAGNPGGLTLNRYAARRAVYGFFGAFMGLVFL----------TSDRPLFAAF 126
Query: 156 IGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQS 215
G A I V++R+ I R PD LD+L + V +G+ QAL RVAE G
Sbjct: 127 TFAFGLLAADAAIWQAVRERKDVIDRTLPDFLDVLAVVVSAGLGFRQALDRVAEKYEG-- 184
Query: 216 VPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVL 275
P ++E+ +T+ ++ +R+ AF+ R + V AL Q + G+ I ++L L
Sbjct: 185 -PWADELRITLRQMDMGVSRRQAFDELRRRNTSEQVAQFVSALQQGEELGSPIAETLIQL 243
Query: 276 VSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILS 321
++ R A ++AA PK T+ ++F LP +++I L
Sbjct: 244 AADMRRTDAQNARRRAARTIPKATLVTLVFMLPATMILIATGMFLG 289
>gi|145299824|ref|YP_001142665.1| flp pilus assembly protein FlpH [Aeromonas salmonicida subsp.
salmonicida A449]
gi|88866591|gb|ABD57359.1| FlpH [Aeromonas salmonicida subsp. salmonicida A449]
gi|142852596|gb|ABO90917.1| flp pilus assembly protein FlpH [Aeromonas salmonicida subsp.
salmonicida A449]
Length = 294
Score = 142 bits (359), Expect = 7e-32, Method: Composition-based stats.
Identities = 56/257 (21%), Positives = 117/257 (45%), Gaps = 4/257 (1%)
Query: 71 RLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLIL 130
R R ++ + + + L AG S + + L +L+ + +
Sbjct: 42 RQRRDAARDWLAWCGRGYPVGAREQARLQQLLAQAGIFSRHGFDRLRAAKLLGGLGGALA 101
Query: 131 GIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLL 190
+ L + V++ VG P W+ +K +S+ ++ PDA+DLL
Sbjct: 102 ----ALLWRLLAAPADGFTLMWVLVAYVVGAGVPERWLQWRARKVKSAQQKVVPDAIDLL 157
Query: 191 LICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDC 250
+I VE+G+++D+AL RV +G L+ + L T AE+ ++ RT +
Sbjct: 158 VISVEAGLALDRALLRVGHYLGALEPGLARQFLRTHAEIQMRGDQASCLARLAWRTGLPE 217
Query: 251 VRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVL 310
+ L + +YG+ + +++R + E R R + E++A SL K+T+ + + +
Sbjct: 218 LDRLANTLQMAQQYGSPLAETMRTISQEARQMRRLALEEQAGSLPGKITLIQMALIMLPM 277
Query: 311 ILVIIGPAILSIIDTMK 327
+++II P + +I++++
Sbjct: 278 LVLIIAPTLNLLINSLR 294
>gi|94312590|ref|YP_585799.1| type II secretion system protein, transmembrane [Cupriavidus
metallidurans CH34]
gi|93356442|gb|ABF10530.1| type II secretion system protein, transmembrane [Cupriavidus
metallidurans CH34]
Length = 369
Score = 142 bits (358), Expect = 7e-32, Method: Composition-based stats.
Identities = 52/267 (19%), Positives = 99/267 (37%), Gaps = 6/267 (2%)
Query: 60 ITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVV 119
+ ++ S ++L R S+ + L V L GF + +
Sbjct: 102 VADTRRGSIGAQLGGRISERFNQHWLESRLGKAAVSAEEQQLLEQCGFYGVRPRAVFGAL 161
Query: 120 RLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSI 179
RL+VP I L W + A + + +R S+
Sbjct: 162 RLLVPGILAALAFAWKLDVSLAGALAWAFAAFAGGFLLA------KTLLRRRAAQRLRSV 215
Query: 180 KRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAF 239
P +D+L + G+SIDQ+L+ + + G L E+ + + + +R+
Sbjct: 216 ADELPILIDMLRLLQGVGLSIDQSLQIIVTEFGSMLQVLGPELQRSNQQFASGRSREQTL 275
Query: 240 ENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLT 299
+ ++ L Q DR+G ++ + LR + R + K L K+T
Sbjct: 276 LRIGKLFDDEDLKGLITLLTQVDRHGGAVQEPLRQFGERLQIARKARMKDKIGRLTVKMT 335
Query: 300 VPMIIFFLPVLILVIIGPAILSIIDTM 326
M++ LPVL+++ GP L ++ +
Sbjct: 336 GVMVVSLLPVLLILTAGPGFLGVMRML 362
>gi|70734195|ref|YP_257835.1| type II secretion system protein F subunit [Pseudomonas fluorescens
Pf-5]
gi|68348494|gb|AAY96100.1| type II secretion system protein F domain [Pseudomonas fluorescens
Pf-5]
Length = 294
Score = 142 bits (358), Expect = 8e-32, Method: Composition-based stats.
Identities = 52/276 (18%), Positives = 107/276 (38%), Gaps = 5/276 (1%)
Query: 54 ILRKQQITSLQKDSASSRLRTRDSKSLRNFVK-KLNLKAILVDENIVNKLRAAGFRSEYS 112
R+++ Q+ + +R LR + +A+ +D L G+R
Sbjct: 23 EQRRRERQIAQRLQGNMTRDSRLGNWLRLLGDSRFGQRAVSMDSETQTLLNRLGWRRARE 82
Query: 113 LNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLV 172
++ ++ P +L + + ++ Q + +L G+ P ++
Sbjct: 83 RSLFAASQIATP----VLAVCLVIFIQEVAFAQAQSKWLVPMLALGAGYLLPKRALAYAA 138
Query: 173 QKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFL 232
++RQ I + LL I ESG++++QALR ++ + L++E+ L +A +
Sbjct: 139 KRRQKHIALEISTFIPLLRILFESGMAVEQALRVLSSEAQKLLPELTQELRLILARVDSG 198
Query: 233 PNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAA 292
+D + L Q G SL+ L RL ++ +
Sbjct: 199 LELGHELNQTATLLAVDEFTDTCVILQQLILQGGGAMKSLQALKQLLDDRRLTRLQEYIS 258
Query: 293 SLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMKD 328
+ K++V M++F P L++V+ GP +I
Sbjct: 259 KMSAKMSVVMMLFLFPALLIVLAGPGFTAIARAFAS 294
>gi|52425830|ref|YP_088967.1| hypothetical protein MS1775 [Mannheimia succiniciproducens MBEL55E]
gi|52307882|gb|AAU38382.1| unknown [Mannheimia succiniciproducens MBEL55E]
Length = 292
Score = 142 bits (358), Expect = 8e-32, Method: Composition-based stats.
Identities = 55/208 (26%), Positives = 106/208 (50%), Gaps = 5/208 (2%)
Query: 119 VRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSS 178
+++ + I ++ GI +F D E GAVI + + P + +++++ +
Sbjct: 90 IKVKLFITLILTGIYALFNLDA--ERKSLAIAGAVIFVLVI--LIPGSLANMILKRKIKN 145
Query: 179 IKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVA 238
+ P +DL+ ICV++G++I+ AL RVAED + LS ML I + + + A
Sbjct: 146 MMTDLPGFVDLVAICVQTGMTINAALLRVAEDFKILNPDLSYVMLRIIRK-AEIIGLPSA 204
Query: 239 FENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKL 298
+ +R T L QS +G+SI L L S+ R +L+ E++ +L K+
Sbjct: 205 LDTLAVSLPTREIRMFTTVLQQSLNFGSSIYSHLLQLSSDMRELQLLTIEEQLGTLSAKM 264
Query: 299 TVPMIIFFLPVLILVIIGPAILSIIDTM 326
+VP+I+F + +I++I+ P ++ + +
Sbjct: 265 SVPLILFIMFPIIILIVAPGVMRVFPNV 292
>gi|239943899|ref|ZP_04695836.1| putative integral membrane protein [Streptomyces roseosporus NRRL
15998]
gi|239990353|ref|ZP_04711017.1| putative integral membrane protein [Streptomyces roseosporus NRRL
11379]
gi|291447362|ref|ZP_06586752.1| integral membrane protein [Streptomyces roseosporus NRRL 15998]
gi|291350309|gb|EFE77213.1| integral membrane protein [Streptomyces roseosporus NRRL 15998]
Length = 295
Score = 141 bits (357), Expect = 9e-32, Method: Composition-based stats.
Identities = 48/206 (23%), Positives = 87/206 (42%), Gaps = 13/206 (6%)
Query: 97 NIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILI 156
++ AG +++ R V + ++ + ++ +L+
Sbjct: 73 KKRRQIDLAGNPGGLTIDRYAARRAVYGALGILGAF----------SMLLRGQLFLALLM 122
Query: 157 GYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSV 216
G I + ++ R+ I+R PD LD+L + V +G+ QAL RVAE G
Sbjct: 123 VAFGLFWVEAGIWSAIRVRREHIERTLPDFLDVLAVVVSAGLGFRQALDRVAEKYEG--- 179
Query: 217 PLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLV 276
P S+E+ +T+ ++ +R+ AFE R + V L Q + G I ++L +
Sbjct: 180 PWSDELRITLRQMDMGVSRRQAFEELRRRNDSEQVAMFVTTLQQGEELGAPIVETLIQIA 239
Query: 277 SETRSERLMEAEKKAASLGPKLTVPM 302
++ R A +KAA PK T +
Sbjct: 240 NDMRRTDAQNARRKAAKAVPKATFAV 265
>gi|254521552|ref|ZP_05133607.1| type II secretion system protein [Stenotrophomonas sp. SKA14]
gi|219719143|gb|EED37668.1| type II secretion system protein [Stenotrophomonas sp. SKA14]
Length = 311
Score = 141 bits (357), Expect = 9e-32, Method: Composition-based stats.
Identities = 64/314 (20%), Positives = 124/314 (39%), Gaps = 15/314 (4%)
Query: 15 AVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRT 74
+ A + L +A + S +K+ R+ R+ + T R
Sbjct: 9 LSLLVLAAGVALLGFAGWVRSHREQRTSATLKTALQPRDEAREVEATGRDSLGWLER--- 65
Query: 75 RDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIW 134
+ L+A L+ L AG+ + I L VRL++ ++
Sbjct: 66 -----FGRSLSGGRLEAALLANEDRLLLDLAGWNTRRGTAIYLGVRLLLALLV------- 113
Query: 135 IFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICV 194
+ E ++ VI G P +S V++R+ +++ P +DLL +
Sbjct: 114 LALALAFSEATGLAKIMVVIGALAAGLLLPKFALSAWVKRRRRAVENELPLLIDLLRLLQ 173
Query: 195 ESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNA 254
G S+DQ+L+ + + + L E+ + R + + D + +
Sbjct: 174 GVGFSMDQSLQTLGDKLRDALPILGGELQEANVAYTHGRTRAQSLRRLSDVYGDDDLSSL 233
Query: 255 TQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVI 314
Q ++Q +G ++ + LR R +R ++K L K+TV M++ LP L+LV+
Sbjct: 234 VQLILQVHAHGGAVQEPLRQFSIRLREQRRNSLKEKVGKLSVKMTVVMMLTLLPALMLVL 293
Query: 315 IGPAILSIIDTMKD 328
GPA++++ TM
Sbjct: 294 AGPALVALAATMSS 307
>gi|33152381|ref|NP_873734.1| tight adherence protein C [Haemophilus ducreyi 35000HP]
gi|33148604|gb|AAP96123.1| tight adherence protein C [Haemophilus ducreyi 35000HP]
Length = 290
Score = 141 bits (357), Expect = 1e-31, Method: Composition-based stats.
Identities = 46/201 (22%), Positives = 104/201 (51%), Gaps = 3/201 (1%)
Query: 125 IIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWP 184
+ L++ ++ Y + + AV+++ V PS+ ++ +++ + I P
Sbjct: 91 VKLLVIALLSFINYTINQDELEFMLGEAVVVV--VAIMLPSMIVNMIIKSKIKRIMSDLP 148
Query: 185 DALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYN 244
+DL+ + V++GISI+ A ++V+ D + L+ +L I + L + VA ++
Sbjct: 149 GFIDLVAVNVQTGISIEAAFKQVSMDFERLNPDLTYVLLRIIRR-AELTSLNVALQDLAI 207
Query: 245 RTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMII 304
+R + QS +G+S+ D+L +L ++ R +L+ E+K +L K++VP+I+
Sbjct: 208 SLPTKEIRMFCTVMQQSLNFGSSVYDNLTMLSADIRDMQLLVMEEKLGTLAAKMSVPLIL 267
Query: 305 FFLPVLILVIIGPAILSIIDT 325
F + +I++I+ P + ++
Sbjct: 268 FVMFPIIILIVAPGAMRVLPN 288
>gi|330830427|ref|YP_004393379.1| Flp pilus assembly protein TadC [Aeromonas veronii B565]
gi|328805563|gb|AEB50762.1| Flp pilus assembly protein TadC [Aeromonas veronii B565]
Length = 294
Score = 141 bits (357), Expect = 1e-31, Method: Composition-based stats.
Identities = 53/252 (21%), Positives = 114/252 (45%), Gaps = 4/252 (1%)
Query: 76 DSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWI 135
+ + + + L AG + + L +L+ + I+ + W
Sbjct: 47 PGREWLAWCGRGYPVGGREQARLQQLLAQAGIFASQGFDRLRGAKLLGGLGLAIMVLTWR 106
Query: 136 FGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVE 195
L + V++ VG P W+ +K +++ ++ PDA+DLL+I VE
Sbjct: 107 L----LGAPADGFTLMWVLMAYVVGAGLPERWLQWRARKVKAAQQKVVPDAIDLLVISVE 162
Query: 196 SGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNAT 255
+G+++D+AL RV + L+ + L T AE+ ++ RT + +
Sbjct: 163 AGLALDRALLRVGHYLEALEPGLARQFLRTHAEIQMRGDQASCLARLAWRTGLPELDRLA 222
Query: 256 QALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVII 315
L + +YG+ + +++R + E R R + E++A SL K+T+ + + ++++II
Sbjct: 223 NTLQMAQQYGSPLAETMRTISQEARQMRRLALEEQAGSLPGKITLIQMALIMLPMLVLII 282
Query: 316 GPAILSIIDTMK 327
P + +I++++
Sbjct: 283 APTLNLLINSLR 294
>gi|23009311|ref|ZP_00050407.1| COG2064: Flp pilus assembly protein TadC [Magnetospirillum
magnetotacticum MS-1]
Length = 195
Score = 141 bits (357), Expect = 1e-31, Method: Composition-based stats.
Identities = 62/195 (31%), Positives = 104/195 (53%), Gaps = 4/195 (2%)
Query: 1 MPHYFFDLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQI 60
M + A A+ T ++ + ++ ++ P + + +L KRMK V+ ERE +R+++
Sbjct: 1 MLDDIVNTALAPRTMAAVLTGIAAAATVFTLIQPLIETDQLGKRMKLVSDEREQIRQRER 60
Query: 61 TSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVR 120
L LRT ++ V++ NL L + KL AG+R + L R
Sbjct: 61 ERLN---NRVTLRTEPKAYMKRVVERFNLSRWLGTDTAKIKLTMAGYRGAGAETAFLFFR 117
Query: 121 LVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIK 180
LVVPI+ + + ++F + +L+ P +R G + G++G P V++SN + KRQ+ I+
Sbjct: 118 LVVPIVLTVGALFYLFVLE-VLDQPPLIRFGLSLFAGFIGLKLPEVYLSNRISKRQAEIR 176
Query: 181 RAWPDALDLLLICVE 195
RA PDAL+L LICVE
Sbjct: 177 RAGPDALELWLICVE 191
>gi|295395665|ref|ZP_06805857.1| integral membrane protein [Brevibacterium mcbrellneri ATCC 49030]
gi|294971481|gb|EFG47364.1| integral membrane protein [Brevibacterium mcbrellneri ATCC 49030]
Length = 297
Score = 141 bits (357), Expect = 1e-31, Method: Composition-based stats.
Identities = 54/272 (19%), Positives = 108/272 (39%), Gaps = 19/272 (6%)
Query: 45 MKSVAVE-REILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLR 103
+ S++ E R +++ + + D RL R SL + + +K
Sbjct: 30 LSSLSPEDRALIKDETRLKRRADGPVKRLGARLGPSLGRLFGGKYPSWVESKIQLTDK-- 87
Query: 104 AAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCA 163
+ + + V ++ G+ L + + +G
Sbjct: 88 ----KQYQDFTGFMAFKGSVFLLCAAGGVSIFLVTKAPL---------ILFIFIAIGLLF 134
Query: 164 PSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEML 223
P + +KRQ +I+ + PD LD+L + V +G+S A+ +V E G PL++E+
Sbjct: 135 PDFALIQSGRKRQEAIEDSLPDFLDVLAVTVSAGLSFRSAIAKVTERTQG---PLADELN 191
Query: 224 LTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSER 283
+ +L+ AF RT + + + L+Q++ G + D+L + + R
Sbjct: 192 TVLHQLNMGETVYDAFSALRKRTTSESLDSFITTLLQAEELGAPLADTLATIALDMRQTT 251
Query: 284 LMEAEKKAASLGPKLTVPMIIFFLPVLILVII 315
A +KAA PK+ + I +P + +I+
Sbjct: 252 AQRARQKAAKASPKIAGVVTIIMVPGTMALIM 283
>gi|239929198|ref|ZP_04686151.1| integral membrane protein [Streptomyces ghanaensis ATCC 14672]
gi|291437532|ref|ZP_06576922.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672]
gi|291340427|gb|EFE67383.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672]
Length = 295
Score = 141 bits (357), Expect = 1e-31, Method: Composition-based stats.
Identities = 54/225 (24%), Positives = 94/225 (41%), Gaps = 13/225 (5%)
Query: 97 NIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILI 156
K+ AG +L+ R V + + ++++ +
Sbjct: 73 KYRRKIDLAGNPGGLTLDRYAARRAVYGALGGVGFLVFLLRGQLFVALLLLAF------- 125
Query: 157 GYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSV 216
G V I + ++ R+ I+R PD LD+L + V +G+ QAL RVA G
Sbjct: 126 ---GAFWTEVGIWSAIRIRKDVIERTLPDFLDVLAVVVSAGLGFRQALDRVASKYEG--- 179
Query: 217 PLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLV 276
P ++E+ +T+ ++ +R+ AF R + V AL Q + G I D+L L
Sbjct: 180 PWADELRITLRQMDLGMSRRQAFAELRRRNDSEQVAMFVTALQQGEELGAPIVDTLVSLA 239
Query: 277 SETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILS 321
+ R A +KAA PK T+ + F +P ++++ IL
Sbjct: 240 KDMRRTDAQNARRKAARAVPKATMMITTFMVPATMILLGAGLILG 284
>gi|302558695|ref|ZP_07311037.1| integral membrane protein [Streptomyces griseoflavus Tu4000]
gi|302476313|gb|EFL39406.1| integral membrane protein [Streptomyces griseoflavus Tu4000]
Length = 295
Score = 141 bits (356), Expect = 1e-31, Method: Composition-based stats.
Identities = 58/257 (22%), Positives = 107/257 (41%), Gaps = 15/257 (5%)
Query: 65 KDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVP 124
+ A L R V +L + K+ AG +++ R V
Sbjct: 43 RTGAVDSLVDRMGMRYAPAVLRLMGPKQVA--KYRRKIDLAGNPGGLTIDRYAARRAVYG 100
Query: 125 IIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWP 184
+ + ++++ + ++ +L+ G V I + ++ R+ I+R P
Sbjct: 101 FLGALGFLVFL----------MRGQLFMALLLLAFGAFWTEVGIWSAIRVRRDVIERTLP 150
Query: 185 DALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYN 244
D LD+L + V +G+ QAL RV+ G P ++E+ +T+ ++ +R+ AF
Sbjct: 151 DFLDVLAVVVSAGLGFRQALDRVSSKYEG---PWADELRITLRQMDLGMSRRQAFAELRR 207
Query: 245 RTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMII 304
R + V AL Q + G I D+L L + R A +KAA PK T+ +
Sbjct: 208 RNDSEQVAMFVTALQQGEELGAPIVDTLVSLAKDMRRTDAQNARRKAARAVPKATMMITT 267
Query: 305 FFLPVLILVIIGPAILS 321
F +P ++++ IL
Sbjct: 268 FMVPATMILLGAGLILG 284
>gi|21326712|gb|AAL92472.1| TadC [Haemophilus ducreyi]
Length = 281
Score = 141 bits (356), Expect = 1e-31, Method: Composition-based stats.
Identities = 46/201 (22%), Positives = 104/201 (51%), Gaps = 3/201 (1%)
Query: 125 IIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWP 184
+ L++ ++ Y + + AV+++ V PS+ ++ +++ + I P
Sbjct: 82 VKLLVIALLSFINYTINQDELEFMLGEAVVVV--VAIMLPSMIVNMIIKSKIKRIMSDLP 139
Query: 185 DALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYN 244
+DL+ + V++GISI+ A ++V+ D + L+ +L I + L + VA ++
Sbjct: 140 GFIDLVAVNVQTGISIEAAFKQVSMDFERLNPDLTYVLLRIIRR-AELTSLNVALQDLAI 198
Query: 245 RTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMII 304
+R + QS +G+S+ D+L +L ++ R +L+ E+K +L K++VP+I+
Sbjct: 199 SLPTKEIRMFCTVMQQSLNFGSSVYDNLTMLSADIRDMQLLVMEEKLGTLAAKMSVPLIL 258
Query: 305 FFLPVLILVIIGPAILSIIDT 325
F + +I++I+ P + ++
Sbjct: 259 FVMFPIIILIVAPGAMRVLPN 279
>gi|307726380|ref|YP_003909593.1| type II secretion system F domain-containing protein [Burkholderia
sp. CCGE1003]
gi|307586905|gb|ADN60302.1| Type II secretion system F domain protein [Burkholderia sp.
CCGE1003]
Length = 318
Score = 141 bits (356), Expect = 2e-31, Method: Composition-based stats.
Identities = 76/290 (26%), Positives = 126/290 (43%), Gaps = 19/290 (6%)
Query: 46 KSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAA 105
K + E + S SS + + R + K D + +L A
Sbjct: 33 KDMQRRIEQAGGVSLAPQAVPSGSSGWAEKIADISRPISQLSIPKEGWEDSPLRLRLMNA 92
Query: 106 GFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPS 165
G+RS + + + L + + F + + ++ +G+ P+
Sbjct: 93 GWRSATAAALYFAA-KTALALLLPALGLVALLQMPFINGQFAVSALILAMLAAIGYYLPN 151
Query: 166 VWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLT 225
++ +RQ +I +PDALDLL +CVE+G+ +D AL RVA +I S ++ E+ L
Sbjct: 152 AVLARCRARRQRAIVEGFPDALDLLTVCVEAGLGMDAALMRVAGEIELASPEVASELQLM 211
Query: 226 IAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLM 285
+ EL ++ A NF RT ++ + L+Q+DR+GTSIG SLRV+ R+ R M
Sbjct: 212 LLELRSGFTKEKALRNFALRTGVEDIDTFASMLVQADRFGTSIGASLRVMSDTLRTRRRM 271
Query: 286 EAEKKAASLGPKLTVPMIIFF---------LPVLILVIIGPAILSIIDTM 326
AE++AA + KL P+I GPA + I +
Sbjct: 272 RAEERAAKIALKLLFPLIFCIFPALMTVLM---------GPAFIHIYRVL 312
>gi|297157606|gb|ADI07318.1| integral membrane protein [Streptomyces bingchenggensis BCW-1]
Length = 297
Score = 141 bits (355), Expect = 2e-31, Method: Composition-based stats.
Identities = 67/311 (21%), Positives = 135/311 (43%), Gaps = 26/311 (8%)
Query: 11 ATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASS 70
A + +A+ VS+ + Y + + +L + +VA+E R + SA
Sbjct: 2 AIGVLLALVAGVSVAGVAYGIAL-YRSEAKLPSDL-AVALEVGATR-----TTVVGSAVD 54
Query: 71 RLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLIL 130
RL R + + + + + + ++ AG +++ R V I+
Sbjct: 55 RLGMRYAPFVLRMMGEKRVG------KVRRRIDLAGNPGGLTVDRYAARRAVYGILGFGG 108
Query: 131 GIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLL 190
++ + + ++ +++ G V I V++R+ +I+R PD LD+L
Sbjct: 109 ALVML----------MKGQLLLALVLVAFGLFWIEVGIWAAVRERRHAIERTLPDFLDVL 158
Query: 191 LICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDC 250
+ V +G+S QAL RVAE G P ++E+ +T+ ++ +R+ AFE R +
Sbjct: 159 AVVVSAGLSFRQALDRVAEKYEG---PWADELRITLRQMDMGVSRRQAFEELRKRNDSEQ 215
Query: 251 VRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVL 310
V L Q + G I ++L + ++ R A ++AA PK T+ + F +P
Sbjct: 216 VAQFVTTLQQGEELGAPIVETLIAIANDMRRTDAQNARRRAARAVPKATMVVTTFMVPGT 275
Query: 311 ILVIIGPAILS 321
++++I +
Sbjct: 276 MILLIAGFFIG 286
>gi|256785513|ref|ZP_05523944.1| integral membrane protein [Streptomyces lividans TK24]
Length = 300
Score = 141 bits (355), Expect = 2e-31, Method: Composition-based stats.
Identities = 53/223 (23%), Positives = 96/223 (43%), Gaps = 13/223 (5%)
Query: 99 VNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGY 158
++ AG +++ R V + + ++++ L +L+
Sbjct: 80 RRRIDLAGNPGGLTIDRYAARRAVYGFLGALGFLVFLLRGQYL----------VALLLLA 129
Query: 159 VGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPL 218
G V I + ++ R+ I+R PD LD+L + V +G+ QAL RV+ G P
Sbjct: 130 FGAFWTEVGIWSAIRIRKDVIERTLPDFLDVLAVVVSAGLGFRQALDRVSTRYEG---PW 186
Query: 219 SEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSE 278
++E+ +T+ ++ R+ AF R + V AL Q + G I D+L L +
Sbjct: 187 ADELRITLRQMDLGMGRREAFTELRRRNDSEQVAMFVTALQQGEELGAPIVDTLVSLAKD 246
Query: 279 TRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILS 321
R A +KAA PK T+ + F +P ++++ IL
Sbjct: 247 MRRTDAQNARRKAARAVPKATLMITTFMVPATMILLGAGLILG 289
>gi|311111713|ref|YP_003982935.1| type II secretion system protein [Rothia dentocariosa ATCC 17931]
gi|310943207|gb|ADP39501.1| type II secretion system protein [Rothia dentocariosa ATCC 17931]
Length = 310
Score = 140 bits (354), Expect = 2e-31, Method: Composition-based stats.
Identities = 51/283 (18%), Positives = 110/283 (38%), Gaps = 9/283 (3%)
Query: 37 GSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDE 96
+ +M+SV++ + R+ Q++ A +S V+ + DE
Sbjct: 30 FGERIAPQMRSVSIRESLHRENQVSGTSVLDALYSFLEPMMQSFLGRVRSTESR----DE 85
Query: 97 NIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILI 156
+ +LR AG S+ +++ +++ + + L + + + +IL
Sbjct: 86 ALAARLRRAG--SDQTVSAFRAEQILWAVSSVALLGVLSVIGLLENQLSLWSGLMLIILG 143
Query: 157 GYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSV 216
G GF A W+ ++ +R+ + +P +++ + V +G S +L R+ G
Sbjct: 144 GVTGFLARDWWLGQIIVRREKQLIAEFPALAEMMALSVAAGESALASLERICRTSRG--- 200
Query: 217 PLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLV 276
L+ E +A+ + A F TQ+ + + + GT + D LR
Sbjct: 201 ELAREFNDILAQTRAGSSLLAALNEFAQSTQIPALSRFVDGVAVAIERGTPLADVLRAQA 260
Query: 277 SETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAI 319
+ R E + A + P++ LP+ ++ I P +
Sbjct: 261 QDVRDNAKRELLEVAGKKEIAMLAPVVFLILPLTVVFAIFPGL 303
>gi|154250530|ref|YP_001411354.1| type II secretion system protein [Parvibaculum lavamentivorans
DS-1]
gi|154154480|gb|ABS61697.1| type II secretion system protein [Parvibaculum lavamentivorans
DS-1]
Length = 315
Score = 140 bits (353), Expect = 3e-31, Method: Composition-based stats.
Identities = 49/234 (20%), Positives = 111/234 (47%), Gaps = 4/234 (1%)
Query: 94 VDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAV 153
V+ + AGF S+ + + +R V + ++ ++ P +
Sbjct: 73 VNRELRQLALRAGFFQPSSVYVFVALRYGVALAIGLVIVLA----RSDGGVPAVADILYG 128
Query: 154 ILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGG 213
+ GY+ + + + +R ++I+R P LD++L+ +++G+S+DQ +R VA +
Sbjct: 129 VFFGYLFYRYVLIALGVYADRRANTIRRELPPVLDIMLMALDAGVSVDQCMRYVAGVVRR 188
Query: 214 QSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLR 273
+ + + IA++ A + R +D ++ + Q+ G + +LR
Sbjct: 189 TAPVTGKVLRRHIADIDAGMPYDAALDRLGQRLGLDEGQDLAATIKQALFQGGELSTTLR 248
Query: 274 VLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
+ +R+ A ++ P+LT+ MI+FF+PVL++V+ GPA++++ ++
Sbjct: 249 RFSVDLSDKRMGMAREQVGRKAPQLTLVMILFFMPVLLIVLAGPAVVTLQGALE 302
>gi|332162959|ref|YP_004299536.1| putative tight adherance operon protein [Yersinia enterocolitica
subsp. palearctica 105.5R(r)]
gi|325667189|gb|ADZ43833.1| putative tight adherance operon protein [Yersinia enterocolitica
subsp. palearctica 105.5R(r)]
Length = 274
Score = 140 bits (353), Expect = 3e-31, Method: Composition-based stats.
Identities = 55/214 (25%), Positives = 105/214 (49%), Gaps = 3/214 (1%)
Query: 110 EYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWIS 169
+ L+ ++ ++L++ + LI+ I L + + V +I + P V +
Sbjct: 61 PFILHNIIYLKLIIAVTILIITAILATF--DLFSINLKNILVMVTIILIMTLYFPKVIVK 118
Query: 170 NLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAEL 229
N+V KR S+ R+ P +D+ CV+SG++ID +L A+ + LS ML
Sbjct: 119 NIVAKRTKSLLRSLPFFIDITAACVQSGMTIDNSLSYSAKKFELINADLSLIMLKVTRR- 177
Query: 230 SFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEK 289
+ + + A + F + +R AL S +G ++ + L L + R +L+ E+
Sbjct: 178 AEINGLENAIKEFNQSSTELEIRMFCSALQYSISFGATVYEQLIKLSKDMREMQLLVTEE 237
Query: 290 KAASLGPKLTVPMIIFFLPVLILVIIGPAILSII 323
K + L KLT+P+ +F L I+++I P++L +I
Sbjct: 238 KISKLTAKLTIPLFLFILIPFIVLVISPSVLELI 271
>gi|254393103|ref|ZP_05008263.1| conserved hypothetical protein [Streptomyces clavuligerus ATCC
27064]
gi|294814750|ref|ZP_06773393.1| Integral membrane protein [Streptomyces clavuligerus ATCC 27064]
gi|326443129|ref|ZP_08217863.1| putative integral membrane protein [Streptomyces clavuligerus ATCC
27064]
gi|197706750|gb|EDY52562.1| conserved hypothetical protein [Streptomyces clavuligerus ATCC
27064]
gi|294327349|gb|EFG08992.1| Integral membrane protein [Streptomyces clavuligerus ATCC 27064]
Length = 295
Score = 140 bits (353), Expect = 3e-31, Method: Composition-based stats.
Identities = 53/220 (24%), Positives = 100/220 (45%), Gaps = 13/220 (5%)
Query: 96 ENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVIL 155
+ + +L AG +++ R V ++ L+ + ++
Sbjct: 72 DALRRRLDMAGNPGGMTVDRYAARRAVYSLLGLVAAF----------SMLLRGQLALAAF 121
Query: 156 IGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQS 215
+ G V I +++R++ I+R PD LD+L + V +G+ QAL RVAE G
Sbjct: 122 LLVFGLFWTDVIIRVAIRRRRADIERTLPDFLDVLAVVVSAGLGFRQALERVAEKYEG-- 179
Query: 216 VPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVL 275
P S+E+ +T+ ++ +R+ AF+ R + V AL Q + G I D+L +
Sbjct: 180 -PWSDELRITLRQMDMGVSRRDAFDQLRRRNDSEQVSMFVTALQQGEELGAPIVDTLIQI 238
Query: 276 VSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVII 315
++ R A ++AA PK T+ + + LP +++I+
Sbjct: 239 ATDMRRTDAQNARREAARAVPKSTLVVTLVMLPATMILIV 278
>gi|21223384|ref|NP_629163.1| integral membrane protein [Streptomyces coelicolor A3(2)]
gi|8218173|emb|CAB92604.1| putative integral membrane protein [Streptomyces coelicolor A3(2)]
Length = 300
Score = 140 bits (353), Expect = 3e-31, Method: Composition-based stats.
Identities = 52/223 (23%), Positives = 96/223 (43%), Gaps = 13/223 (5%)
Query: 99 VNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGY 158
++ AG +++ R V + + ++++ L +L+
Sbjct: 80 RRRIDLAGNPGGLTIDRYAARRAVYGFLGALGFLVFLLRGQYL----------VALLLLA 129
Query: 159 VGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPL 218
G I + ++ R+ I+R PD LD+L + V +G+ QAL RV+ G P
Sbjct: 130 FGAFWTEAGIWSAIRIRKDVIERTLPDFLDVLAVVVSAGLGFRQALDRVSTRYEG---PW 186
Query: 219 SEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSE 278
++E+ +T+ ++ +R+ AF R + V AL Q + G I D+L L +
Sbjct: 187 ADELRITLRQMDLGMSRREAFTELRRRNDSEQVAMFVTALQQGEELGAPIVDTLVSLAKD 246
Query: 279 TRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILS 321
R A +KAA PK T+ + F +P ++++ IL
Sbjct: 247 MRRTDAQNARRKAARAVPKATLMITTFMVPATMILLGAGLILG 289
>gi|300741822|ref|ZP_07071843.1| putative type II secretion system protein F domain protein [Rothia
dentocariosa M567]
gi|300381007|gb|EFJ77569.1| putative type II secretion system protein F domain protein [Rothia
dentocariosa M567]
Length = 310
Score = 140 bits (353), Expect = 3e-31, Method: Composition-based stats.
Identities = 51/283 (18%), Positives = 109/283 (38%), Gaps = 9/283 (3%)
Query: 37 GSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDE 96
+ +M+SV++ + R+ Q + A +S V+ + DE
Sbjct: 30 FGERIAPQMRSVSIRESLHRENQASGTSVLDALYSFLEPMMQSFLGRVRSTESR----DE 85
Query: 97 NIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILI 156
+ +LR AG S+ +++ +++ + + L + + + +IL
Sbjct: 86 ALAARLRRAG--SDQTVSAFRAEQILWAVSSVALLGVLSVIGLLENQLSLWSGLMLIILG 143
Query: 157 GYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSV 216
G GF A W+ ++ +R+ + +P +++ + V +G S +L R+ G
Sbjct: 144 GVTGFLARDWWLGQIIVRREKQLIAEFPALAEMMALSVAAGESALASLERICRTSRG--- 200
Query: 217 PLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLV 276
L+ E +A+ + A F TQ+ + + + GT + D LR
Sbjct: 201 ELAREFNDILAQTRAGSSLLAALNEFAQSTQIPALSRFVDGVAVAIERGTPLADVLRAQA 260
Query: 277 SETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAI 319
+ R E + A + P++ LP+ ++ I P +
Sbjct: 261 QDVRDNAKRELLEVAGKKEIAMLAPVVFLILPLTVVFAIFPGL 303
>gi|229588191|ref|YP_002870310.1| hypothetical protein PFLU0643 [Pseudomonas fluorescens SBW25]
gi|229360057|emb|CAY46911.1| putative membrane protein [Pseudomonas fluorescens SBW25]
Length = 298
Score = 140 bits (352), Expect = 4e-31, Method: Composition-based stats.
Identities = 48/245 (19%), Positives = 99/245 (40%), Gaps = 4/245 (1%)
Query: 84 VKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLE 143
L +++ +D L G+R ++ ++ PI+ L L ++ +
Sbjct: 57 ASSLAQRSVSLDNETQALLNRVGWRKSSQRSLFAAFQIGTPIVLLGLTLLGQQLLFPHAD 116
Query: 144 YPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQA 203
A + +G+ P ++ + RQ +I + + LL I ESG++++Q+
Sbjct: 117 P----AWIAPMFALGIGYLLPKRVLAAAAKHRQQAIAKEISTFIPLLRILFESGMAVEQS 172
Query: 204 LRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDR 263
LR + + L+ E+ L +A + + ++D + L Q +
Sbjct: 173 LRVLGNEAQRLLPHLTHELRLILARVDSGLELGEELGKTVHVLEVDEFTDTCIILQQLIQ 232
Query: 264 YGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSII 323
G SL L RL ++ + + K++V M++F P L++V+ GPA + I
Sbjct: 233 QGGGAMKSLLALKQLLDDRRLTRLQEYISKMSAKMSVVMMVFLFPALLIVLGGPAFIGIA 292
Query: 324 DTMKD 328
+
Sbjct: 293 RALSH 297
>gi|295395216|ref|ZP_06805424.1| type II secretion system protein [Brevibacterium mcbrellneri ATCC
49030]
gi|294971978|gb|EFG47845.1| type II secretion system protein [Brevibacterium mcbrellneri ATCC
49030]
Length = 312
Score = 140 bits (352), Expect = 4e-31, Method: Composition-based stats.
Identities = 52/311 (16%), Positives = 126/311 (40%), Gaps = 9/311 (2%)
Query: 9 FDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSA 68
D + A+ +V + + + +P + LE R+ ++ ++ + ++
Sbjct: 4 IDHPLVIGALGLSVGLSLTFFVLSLPVMRRPRLEDRIGPYLRTTQVAEEKYHLTAPTETG 63
Query: 69 SSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFL 128
L + +++ + D ++ +L G ++++ ++++ I L
Sbjct: 64 FGGLARHFAHRALHWLN----SRMTTDVSVTLRLSKLG--PSHTVDSFRARQVLLIIAGL 117
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
++G + + + V ++L G G ++ V+KR+ I +P +
Sbjct: 118 VVGALMCTVIIVARGFNPVVCVVLIVLGGVGGHFLNDWLLTQAVKKREERILAEFPTIAE 177
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
LL + + +G AL RV G LS+E+ + +A+ + A + RT +
Sbjct: 178 LLALSITAGEGTVDALNRVCHTATG---ELSDELRIALAQARTGTSLVDALDAMARRTNI 234
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP 308
+ L + GT + + LR ++ R E + + + + VP+++F LP
Sbjct: 235 QSLIQFVDGLAIALSRGTPLSEVLRAQAADVREEGRRKLMELSGKKEVGMLVPVVLFVLP 294
Query: 309 VLILVIIGPAI 319
+ +L + P++
Sbjct: 295 ITVLFAVYPSL 305
>gi|123443825|ref|YP_001007796.1| putative tight adherance operon protein [Yersinia enterocolitica
subsp. enterocolitica 8081]
gi|122090786|emb|CAL13668.1| putative tight adherance operon protein [Yersinia enterocolitica
subsp. enterocolitica 8081]
Length = 274
Score = 139 bits (351), Expect = 5e-31, Method: Composition-based stats.
Identities = 57/216 (26%), Positives = 107/216 (49%), Gaps = 7/216 (3%)
Query: 110 EYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWIS 169
+ L+ ++ ++L++ + LI+ I L + + V +I + P V +
Sbjct: 61 PFILHNIIYLKLIIAVTILIITAI--LAAFDLFSINLKSILIMVTIILIMTLYFPKVIVK 118
Query: 170 NLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTI--A 227
N+V +R S+ R+ P +D+ CV+SG++ID +L A+ + LS ML A
Sbjct: 119 NIVARRTQSLLRSLPFFIDITAACVQSGMTIDNSLSYSAKKFELINADLSLIMLKVTKRA 178
Query: 228 ELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEA 287
E++ L N A + F + +R AL S +G ++ + L L + R +L+
Sbjct: 179 EINGLEN---AIKEFNQSSTELEIRMFCSALQYSISFGATVYEQLIKLSKDMREMQLLVT 235
Query: 288 EKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSII 323
E+K + L KLT+P+ +F L +++++ P IL +I
Sbjct: 236 EEKISKLTAKLTIPLFLFILIPFVVLVVSPGILELI 271
>gi|297202077|ref|ZP_06919474.1| integral membrane protein [Streptomyces sviceus ATCC 29083]
gi|297148030|gb|EDY58317.2| integral membrane protein [Streptomyces sviceus ATCC 29083]
Length = 296
Score = 139 bits (351), Expect = 5e-31, Method: Composition-based stats.
Identities = 60/293 (20%), Positives = 115/293 (39%), Gaps = 18/293 (6%)
Query: 19 TTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSK 78
AV + L+ V + + + +++ ++ S + + S + +
Sbjct: 1 MIAVGLALLMAVSVWGVFAGIRMYRAEAKLPS--DLVLALEVGSTRTGAVDSLIDRMGMR 58
Query: 79 SLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGY 138
++ + K + K+ AG ++N R V + + ++++
Sbjct: 59 YAPTVLRLMGPKQV---AKYRRKIDLAGNPGGLTINRYAARRAVYGFLGTLGFLVFLLRG 115
Query: 139 DKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGI 198
L+ G V I + ++ R+ I+R PD LD+L + V +G+
Sbjct: 116 QVLVALLLLA----------FGAFWTEVGIWSAIRVRKDVIERTLPDFLDVLAVVVSAGL 165
Query: 199 SIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQAL 258
QAL RVA G P ++E+ +T+ ++ +R+ AF R + V AL
Sbjct: 166 GFRQALDRVASKYEG---PWADELRITLRQMDLGMSRRQAFAELRRRNDSEQVAMFVTAL 222
Query: 259 IQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLI 311
Q + G I D+L L + R A +KAA PK T+ + F +P +
Sbjct: 223 QQGEELGAPIVDTLVSLAKDMRRTDAQNARRKAARAVPKATMMITTFMVPATM 275
>gi|170022929|ref|YP_001719434.1| type II secretion system protein [Yersinia pseudotuberculosis
YPIII]
gi|169749463|gb|ACA66981.1| type II secretion system protein [Yersinia pseudotuberculosis
YPIII]
Length = 277
Score = 139 bits (351), Expect = 6e-31, Method: Composition-based stats.
Identities = 42/182 (23%), Positives = 88/182 (48%), Gaps = 5/182 (2%)
Query: 149 RVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVA 208
+ +L AP + I N + KR +++ ++ P +D+ CV+SG++I+ +L
Sbjct: 98 LLTIGLLSIITTLYAPRMIIKNALTKRTNTLLKSLPFFIDITAACVQSGMTIENSLNYTT 157
Query: 209 EDIGGQSVPLSEEMLLTI--AELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGT 266
+ + L M AE++ L N + + ++ L S +G+
Sbjct: 158 QKFQTINTDLCLIMSKVTKRAEINGLENAIKELQYYSPAI---EMKMFCSTLQYSLSFGS 214
Query: 267 SIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
++ + L L + R +L+ E+ + L KLT+P+ +F L +L++I P+IL +++ +
Sbjct: 215 TVYEQLTHLSQDMREMQLLMTEESISKLSTKLTLPLFLFILIPFVLLVISPSILELLNYV 274
Query: 327 KD 328
K+
Sbjct: 275 KN 276
>gi|148556412|ref|YP_001263994.1| type II secretion system protein [Sphingomonas wittichii RW1]
gi|148501602|gb|ABQ69856.1| type II secretion system protein [Sphingomonas wittichii RW1]
Length = 297
Score = 139 bits (351), Expect = 6e-31, Method: Composition-based stats.
Identities = 61/262 (23%), Positives = 105/262 (40%), Gaps = 9/262 (3%)
Query: 73 RTRDSKSLRNFVKKLNLKAILVD-----ENIVNKLRAAGFRSEYSLNILLVVRLVVPIIF 127
RT +++ R L L A L I +LR AG ++ L +RL +
Sbjct: 38 RTVSAQAARPLWGGLKLPAFLAPRGRDGSEIARELREAGIHHPRAIEYFLWLRLGATAVA 97
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
L I R VIL G + + L RQ +I +P L
Sbjct: 98 CGLAAIANLVATGAP----LSRPVPVILAGAGAYLLSKRLLHFLKGVRQRAITAEFPFLL 153
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQ 247
DLL + +ESG+S+DQ R +A + + L+ + + +L + A + RT
Sbjct: 154 DLLQMMLESGLSLDQCFRSIATEENEATPRLAATVRRLVFDLDRGMSYDAALGRWAERTA 213
Query: 248 MDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFL 307
+ + Q+ GT + +LR E R+ A + + ++ + +I FL
Sbjct: 214 VGGAKELASLFQQALLQGTELAPALRTFTREFTERRIAHARESIGRISVQMVLVLIACFL 273
Query: 308 PVLILVIIGPAILSIIDTMKDH 329
P + +V+ GP + S+ D ++
Sbjct: 274 PAIFIVVGGPPVASLFDMIRSE 295
>gi|167399416|ref|ZP_02304940.1| type II secretion system protein [Yersinia pestis biovar Antiqua
str. UG05-0454]
gi|167051920|gb|EDR63328.1| type II secretion system protein [Yersinia pestis biovar Antiqua
str. UG05-0454]
Length = 205
Score = 139 bits (351), Expect = 6e-31, Method: Composition-based stats.
Identities = 46/207 (22%), Positives = 97/207 (46%), Gaps = 5/207 (2%)
Query: 124 PIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAW 183
I+ IL I+ I ++ + + +L P + I N + KR +++ ++
Sbjct: 1 MIVIFILSILTILAIFNVVNINQKTLLTIGLLSIISTLYLPRMIIKNALTKRTNNLLKSL 60
Query: 184 PDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTI--AELSFLPNRQVAFEN 241
P +D+ CV+SG++I+ +L + + L M AE++ L N +
Sbjct: 61 PFFIDITAACVQSGMTIENSLNYTTQKFQTINTDLCLIMSKVTKRAEINGLENAIKELQY 120
Query: 242 FYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVP 301
+ ++ L S +G+++ + L L + R +L+ E+ + L KLT+P
Sbjct: 121 YSPAI---EMKMFCSTLQYSISFGSTVYEQLTHLSQDMREMQLLMTEESISKLSTKLTLP 177
Query: 302 MIIFFLPVLILVIIGPAILSIIDTMKD 328
+ +F L +L++I P+IL +++ +K+
Sbjct: 178 LFLFILIPFVLLVISPSILELLNYVKN 204
>gi|220913151|ref|YP_002488460.1| type II secretion system protein [Arthrobacter chlorophenolicus A6]
gi|219860029|gb|ACL40371.1| type II secretion system protein [Arthrobacter chlorophenolicus A6]
Length = 312
Score = 139 bits (350), Expect = 6e-31, Method: Composition-based stats.
Identities = 56/315 (17%), Positives = 117/315 (37%), Gaps = 14/315 (4%)
Query: 15 AVAITTAVSIFSLIYAVVI-------PSLGSGELEKRMKSVAVEREILRKQQITSLQKDS 67
+ ++ A ++ + + + P + + L +R++ ++ + L + ++ +
Sbjct: 1 MITVSPAAAVCGAVLGIGLWLVIFRSPIMRATTLAQRIEP-QLKSQNLESRLLSGEHTLT 59
Query: 68 ASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIF 127
L +R+ + L K +L AG S+ +++
Sbjct: 60 PFGPLERILRPFIRDGIAALG-KMSPAPGATARRLAQAGINK--SVIDFRAEQVIWAAAG 116
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
L + + L A+I G GF W+ V++R+ + +P
Sbjct: 117 FALTSAIVAVGAAAGRFNALLAAVAIIGSGISGFIVRDYWLGVQVRRREERMMAEFPSLA 176
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQ 247
+L+ + V +G S AL RV G LS+E +AE A + F RT
Sbjct: 177 ELMALAVGAGESATGALDRVCRSARG---ELSKEFSTILAETRAGKPLVNALQEFSARTD 233
Query: 248 MDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFL 307
+ + ++ + GT + D LR + R + + A + VP++ L
Sbjct: 234 LAPLVRFVDGIVVAVERGTPLADVLRAQAQDVRDTAKRDLMEAAGKKEIAMMVPLVFGVL 293
Query: 308 PVLILVIIGPAILSI 322
P+ ++ + P I +I
Sbjct: 294 PLTVVFAVFPGISAI 308
>gi|15602712|ref|NP_245784.1| hypothetical protein PM0847 [Pasteurella multocida subsp. multocida
str. Pm70]
gi|12721156|gb|AAK02931.1| TadC [Pasteurella multocida subsp. multocida str. Pm70]
Length = 284
Score = 139 bits (350), Expect = 7e-31, Method: Composition-based stats.
Identities = 47/179 (26%), Positives = 92/179 (51%), Gaps = 2/179 (1%)
Query: 148 LRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRV 207
+G I++ ++ P + + +++ + I P +DL+ + V++GISID AL++V
Sbjct: 107 FVIGLSIILVFI-IVIPGILTNAILKAKVKKIMVDLPGFIDLVAVNVQTGISIDAALKQV 165
Query: 208 AEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTS 267
A D + L+ ML I + S L A ++ +R L QS +G+S
Sbjct: 166 AIDFKKLNPDLTYVMLRIIRK-SELTGLSQALQDLSISLPTTEIRMFCTVLQQSLNFGSS 224
Query: 268 IGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
I L L ++ R +L+ E+K +L K+++P+I+F + +I++I+ P I+ + +
Sbjct: 225 IYSHLIQLSADIREIQLLIIEEKLGTLSAKMSIPLILFIMFPIIILILAPGIMRVFPNV 283
>gi|254505024|ref|ZP_05117175.1| Bacterial type II secretion system protein F domain [Labrenzia
alexandrii DFL-11]
gi|222441095|gb|EEE47774.1| Bacterial type II secretion system protein F domain [Labrenzia
alexandrii DFL-11]
Length = 339
Score = 139 bits (350), Expect = 7e-31, Method: Composition-based stats.
Identities = 69/324 (21%), Positives = 134/324 (41%), Gaps = 25/324 (7%)
Query: 6 FDLFDATELAVAITTAVSIFSLIYAVVIPSL-GSGELEKRMKSVAVEREILRKQQITSLQ 64
F T AVAI S+ +IY + +PSL G+ + + RM +V+ R Q T +
Sbjct: 7 FMTPAITGAAVAILVMFSVGGIIYGLFLPSLSGTKKRDARMSAVSA-----RPQSETQRK 61
Query: 65 KDSASSRLRTRDSKSLRNFVKKLNLKAILVDE-NIVNKLRAAGFRSEYSLNILLVVRLVV 123
++R + L++F ++ K + K+ AG E+ + L++ +V
Sbjct: 62 TMRDTNRRKKSIQDQLKDFEERQKAKHEKQKNVPLKVKIEQAGL--EWEMRHLVLFSVVS 119
Query: 124 PIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAW 183
I+F ++ +I L A +G +GF P +I N ++R ++
Sbjct: 120 AILFFVISLIASGNL---------LIAAAFTFVGGIGF--PRWYIGNKRKRRFNAFLNEL 168
Query: 184 PDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFY 243
P+ +D+++ V++G+ + ++ VA + P++ E + A
Sbjct: 169 PNGIDIIVRGVKAGLPLSDCVKVVAREARE---PVATEFRKVTETQVMGVSLAEALSKMP 225
Query: 244 NRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMI 303
+R + + + G + ++L L R + M+A+ KA S K + +I
Sbjct: 226 DRVPLPETNFLAIVVSIQQKAGGGLAEALGNLSRVLRQRKAMKAKIKALSSEAKSSAAII 285
Query: 304 IFFLPVL--ILVIIGPAILSIIDT 325
V+ IL I P + I+ T
Sbjct: 286 GALPFVVGGILFFIAPDYMMILFT 309
>gi|302553855|ref|ZP_07306197.1| integral membrane protein [Streptomyces viridochromogenes DSM
40736]
gi|302471473|gb|EFL34566.1| integral membrane protein [Streptomyces viridochromogenes DSM
40736]
Length = 295
Score = 138 bits (349), Expect = 8e-31, Method: Composition-based stats.
Identities = 52/215 (24%), Positives = 94/215 (43%), Gaps = 13/215 (6%)
Query: 97 NIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILI 156
K+ AG +++ R V + + ++++ + ++ +L+
Sbjct: 73 KYRRKIDLAGNPGGLTIDRYAARRAVYGFLGAVGFLVFL----------MRGQLLVALLL 122
Query: 157 GYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSV 216
G V I + ++ R+ I+R PD LD+L + V +G+ QAL RVA G
Sbjct: 123 LAFGAFWTEVGIWSAIRIRKDVIERTLPDFLDVLAVVVSAGLGFRQALDRVASRYEG--- 179
Query: 217 PLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLV 276
P ++E+ +T+ ++ +R+ AF R + V AL Q + G I D+L L
Sbjct: 180 PWADELRITLRQMDLGMSRRQAFAELRRRNDSEQVAMFVTALQQGEELGAPIVDTLVSLA 239
Query: 277 SETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLI 311
+ R A +KAA PK T+ + F +P +
Sbjct: 240 KDMRRTDAQNARRKAARAVPKATMMITTFMVPATM 274
>gi|238759125|ref|ZP_04620294.1| Type II secretion system protein [Yersinia aldovae ATCC 35236]
gi|238702673|gb|EEP95221.1| Type II secretion system protein [Yersinia aldovae ATCC 35236]
Length = 273
Score = 138 bits (349), Expect = 8e-31, Method: Composition-based stats.
Identities = 53/220 (24%), Positives = 109/220 (49%), Gaps = 7/220 (3%)
Query: 110 EYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWIS 169
Y ++ ++ +R+++ +I + I I ++ + ++ V P V I
Sbjct: 57 PYIIHNIIYLRMLLFMILFTISCILI--ATDVIATNSVTLLYFCFIMLIVVIYFPRVIIR 114
Query: 170 NLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTI--A 227
N+V K+ ++ ++ P +D+ CV+SG++ID +L A+ + LS ML A
Sbjct: 115 NIVSKKIRTLLQSLPFFIDITAACVQSGMTIDSSLSYTAKKFKLINADLSLIMLKITKRA 174
Query: 228 ELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEA 287
E++ L N F+ + T ++ AL S +G+++ D L L + R +L+
Sbjct: 175 EINGLENAIKEFQQYSTET---EIKMFCSALQYSIIFGSTVYDQLIKLSQDMREMQLLVT 231
Query: 288 EKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
E+K + L KLT+P+ +F L + ++I P++L ++ ++
Sbjct: 232 EEKNSKLSSKLTLPLFVFILIPFVALVISPSVLELLKYVQ 271
>gi|311107627|ref|YP_003980480.1| type II secretion system protein F domain-containing protein 3
[Achromobacter xylosoxidans A8]
gi|310762316|gb|ADP17765.1| bacterial type II secretion system protein F domain protein 3
[Achromobacter xylosoxidans A8]
Length = 331
Score = 138 bits (349), Expect = 9e-31, Method: Composition-based stats.
Identities = 52/314 (16%), Positives = 116/314 (36%), Gaps = 3/314 (0%)
Query: 15 AVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRT 74
+ A + L + + + RE + T
Sbjct: 15 MALMLVAAGLVVLGLGMARRLRSQSRSRQVVDQALAAREGGAASAPLRGEGGQGRLAAAT 74
Query: 75 RDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEY-SLNILLVVRLVVPIIFLILGII 133
R + + + + L L+ + AG+ + + + +++R+ + I+ + +
Sbjct: 75 RAADTFGKRLSEGRLADALLASEDRKLVDMAGYANPGTARSRFVLIRVGLAILLPVAAV- 133
Query: 134 WIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLIC 193
K L + A L +G+ P + + +R+ P +DLL +
Sbjct: 134 -TLDLSKHLPDMPMGALVAGFLGFAIGYMLPKWIVQRRLARRRRQAADELPLLIDLLRLL 192
Query: 194 VESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRN 253
G+SIDQ+L+ + ++ G L+ E+ L R+ + D +
Sbjct: 193 QGVGLSIDQSLQVLVKEFGQVLPVLAFELRLASELYVRGRTREQSLARLAAGFDNDDLSA 252
Query: 254 ATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILV 313
+ + Q D++G ++ + L R +R +E ++K K+T MI+ LP L++V
Sbjct: 253 ICRLIAQVDQHGGAVQEPLNRFGERLRDKRRLELKEKVGKTTVKMTGVMIVTLLPALLIV 312
Query: 314 IIGPAILSIIDTMK 327
G ++++ +
Sbjct: 313 TGGAGFIAVLRGLS 326
>gi|289769409|ref|ZP_06528787.1| integral membrane protein [Streptomyces lividans TK24]
gi|289699608|gb|EFD67037.1| integral membrane protein [Streptomyces lividans TK24]
Length = 291
Score = 138 bits (349), Expect = 9e-31, Method: Composition-based stats.
Identities = 53/223 (23%), Positives = 96/223 (43%), Gaps = 13/223 (5%)
Query: 99 VNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGY 158
++ AG +++ R V + + ++++ L +L+
Sbjct: 71 RRRIDLAGNPGGLTIDRYAARRAVYGFLGALGFLVFLLRGQYL----------VALLLLA 120
Query: 159 VGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPL 218
G V I + ++ R+ I+R PD LD+L + V +G+ QAL RV+ G P
Sbjct: 121 FGAFWTEVGIWSAIRIRKDVIERTLPDFLDVLAVVVSAGLGFRQALDRVSTRYEG---PW 177
Query: 219 SEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSE 278
++E+ +T+ ++ R+ AF R + V AL Q + G I D+L L +
Sbjct: 178 ADELRITLRQMDLGMGRREAFTELRRRNDSEQVAMFVTALQQGEELGAPIVDTLVSLAKD 237
Query: 279 TRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILS 321
R A +KAA PK T+ + F +P ++++ IL
Sbjct: 238 MRRTDAQNARRKAARAVPKATLMITTFMVPATMILLGAGLILG 280
>gi|319941897|ref|ZP_08016218.1| hypothetical protein HMPREF9464_01437 [Sutterella wadsworthensis
3_1_45B]
gi|319804550|gb|EFW01420.1| hypothetical protein HMPREF9464_01437 [Sutterella wadsworthensis
3_1_45B]
Length = 297
Score = 138 bits (349), Expect = 1e-30, Method: Composition-based stats.
Identities = 67/259 (25%), Positives = 132/259 (50%), Gaps = 6/259 (2%)
Query: 52 REILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEY 111
R +L +Q++ ++ S +R D +L L+ + ++ AGF +
Sbjct: 29 RSLLVEQRLNQIKGSGDSRLVRWEDLLTLIARP----LRRSRDLAAVERSMQQAGFIKPW 84
Query: 112 SLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNL 171
++ L+ R +V I + G + I L + + L+ G AP ++S L
Sbjct: 85 QTDLFLLFRALVLIAAAVGGWLAIDIDPTHLVQKPLPPLAYLFLLFVAG-RAPGWFLSEL 143
Query: 172 VQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSF 231
++RQ+ I+ P A+DLL IC+ G+S+++A RVA +I ++ +++E +T E+
Sbjct: 144 AERRQNRIRLFIPKAVDLLTICMSCGMSLEEAFDRVASEIARRAPEVAKEFRMTRYEM-L 202
Query: 232 LPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKA 291
+ NR VA + R+ + ++ +L+QS +YGT + ++L+ + +E R+ +L E E+KA
Sbjct: 203 VVNRTVALKRLEARSGVREMKILANSLLQSIQYGTPLTEALQSIAAEARAGQLSELEQKA 262
Query: 292 ASLGPKLTVPMIIFFLPVL 310
+ + VP+I+ L +
Sbjct: 263 GRISAVIGVPLIVLVLFPV 281
>gi|116671217|ref|YP_832150.1| type II secretion system protein [Arthrobacter sp. FB24]
gi|116611326|gb|ABK04050.1| type II secretion system protein [Arthrobacter sp. FB24]
Length = 313
Score = 138 bits (348), Expect = 1e-30, Method: Composition-based stats.
Identities = 56/289 (19%), Positives = 111/289 (38%), Gaps = 10/289 (3%)
Query: 34 PSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAIL 93
P + +E ++KS +E ++L LR + L + + + NL +
Sbjct: 31 PMSFAERIEPQLKSQNLESKLLLASTDNLTPFGPLELILRPMLKEGL-SVLARFNLGS-- 87
Query: 94 VDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAV 153
+ +L AG R S+ +L+ ++ +L I ++ V AV
Sbjct: 88 --SALSRRLAQAGVRK--SVVDFRAEQLLWAVLGFVLATGLILVGAASGQFNPFFAVVAV 143
Query: 154 ILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGG 213
+ GF + + +++R+ + +P +L+ + V +G S AL RV
Sbjct: 144 LGSALGGFLFRDYCLGSQIKRREKLMMAEFPSLAELMALAVSAGESATGALDRVC---RS 200
Query: 214 QSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLR 273
L+ E L + E A + F RT + + +I + GT + D LR
Sbjct: 201 SHGELAREFELVLGETRAGKPLVEALQRFSARTDLGPLVRFVDGIIVAVERGTPLADVLR 260
Query: 274 VLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
+ R + + A + VP++ LP+ ++ + P + +I
Sbjct: 261 AQAQDVRDTAKRDLMESAGKKEIAMMVPLVFGVLPLTVIFAVFPGLAAI 309
>gi|254381954|ref|ZP_04997317.1| integral membrane protein [Streptomyces sp. Mg1]
gi|194340862|gb|EDX21828.1| integral membrane protein [Streptomyces sp. Mg1]
Length = 297
Score = 138 bits (347), Expect = 2e-30, Method: Composition-based stats.
Identities = 50/217 (23%), Positives = 96/217 (44%), Gaps = 13/217 (5%)
Query: 99 VNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGY 158
++ AG S +++ R V + + + +L +L+
Sbjct: 76 RRQIDTAGNPSGLTIDRYAARRAVYAFLGAVGAFAMLLNGQLVL----------ALLMVA 125
Query: 159 VGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPL 218
G + + ++ R+ I+R PD LD+L + V +G+ AL RVA+ G P
Sbjct: 126 FGLFWIEFGLWSAIRIRRDHIERTLPDFLDVLAVVVSAGLGFRPALERVADKYEG---PW 182
Query: 219 SEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSE 278
S+E+ +T+ +++ +R+ AF+ R + V AL Q + G+ I ++L L +
Sbjct: 183 SDEIRITLQQMTMGVSRRQAFDELRRRNDSEQVAQFVTALQQGEELGSPIVETLIALAED 242
Query: 279 TRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVII 315
R A ++AA PK T + F LP +++++
Sbjct: 243 MRRTDAQNARRRAARAVPKATFAVTTFMLPGTLILLV 279
>gi|332382440|gb|AEE67287.1| hypothetical protein BPTD_1970 [Bordetella pertussis CS]
Length = 328
Score = 138 bits (347), Expect = 2e-30, Method: Composition-based stats.
Identities = 51/299 (17%), Positives = 114/299 (38%), Gaps = 2/299 (0%)
Query: 30 AVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNL 89
V + ++R ++V R + + ++ ++ L
Sbjct: 27 VVGAALVARAGRQQRSRAVVDRALAARDGHVAEPPP-AGRMAAVASAAEHAGAKLEHGKL 85
Query: 90 KAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLR 149
L+ + + A GFR+ + + + + L W+ + + P
Sbjct: 86 GDSLLASDDRKLIDACGFRNP-ARARAWFMLARLLLAGLAPLAAWLVLRARHADLPLAYV 144
Query: 150 VGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAE 209
AV L +G+ P + + +R+ + P +DLL + G+S+DQ++ + +
Sbjct: 145 ACAVFLGFGLGWMVPKWMLLRRIARRRECAEAELPLFIDLLRLLQGVGLSVDQSMHVLIQ 204
Query: 210 DIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIG 269
D L E+ + + + R+ + D + + ++Q DR+G ++
Sbjct: 205 DFRSVMPVLGGELKIAAEQYARGRTREQSLSRLAQGFDNDDLSAICRLIVQVDRHGGAVQ 264
Query: 270 DSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMKD 328
D L R R +E + + A L K+T M++ LP L+++ G ++++ M
Sbjct: 265 DPLARFAERVRERRRLELKARVARLTVKMTGVMVVTLLPALLIITGGSGFVALLRGMSQ 323
>gi|33596973|ref|NP_884616.1| hypothetical protein BPP2380 [Bordetella parapertussis 12822]
gi|33566424|emb|CAE37677.1| putative membrane protein [Bordetella parapertussis]
Length = 328
Score = 137 bits (346), Expect = 2e-30, Method: Composition-based stats.
Identities = 56/325 (17%), Positives = 127/325 (39%), Gaps = 3/325 (0%)
Query: 5 FFDLFDATELAVAITTAVSIFSLIYAVV-IPSLGSGELEKRMKSVAVEREILRKQQITSL 63
L ++ + + A+ + ++ AVV + + ++R ++V R +
Sbjct: 1 MDRLLADSQTRMLLVAALPVLMVVCAVVGVALVARAGRQQRSRAVVDRALAARDGHVAEP 60
Query: 64 QKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVV 123
+ ++ ++ L L+ + + A GFR+ + + +
Sbjct: 61 PP-AGRMAAVASAAEHAGAKLEHGKLGDSLLAIDDRKLIDACGFRNP-ARARAWFMLARL 118
Query: 124 PIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAW 183
+ L W+ + E P AV L +G+ P + + +R+ +
Sbjct: 119 LLAGLAPLAAWLVLRARHAEMPLAYVACAVFLGFGLGWMVPKWMLLRRIARRRECAEAEL 178
Query: 184 PDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFY 243
P +DLL + G+S+DQ++ + +D L E+ + + + R+ +
Sbjct: 179 PLFIDLLRLLQGVGLSVDQSMHVLIQDFRSVMPVLGGELKIAAEQYARGRTREQSLSRLA 238
Query: 244 NRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMI 303
D + + ++Q DR+G ++ D L R R +E + + A L K+T M+
Sbjct: 239 QGFDNDDLSAICRLIVQVDRHGGAVQDPLARFAERVRERRRLELKARVARLTVKMTGVMV 298
Query: 304 IFFLPVLILVIIGPAILSIIDTMKD 328
+ LP L+++ G ++++ M
Sbjct: 299 VTLLPALLIITGGSGFVALLRGMSQ 323
>gi|51891530|ref|YP_074221.1| hypothetical protein STH392 [Symbiobacterium thermophilum IAM
14863]
gi|51855219|dbj|BAD39377.1| conserved hypothetical protein [Symbiobacterium thermophilum IAM
14863]
Length = 289
Score = 137 bits (346), Expect = 2e-30, Method: Composition-based stats.
Identities = 60/233 (25%), Positives = 108/233 (46%), Gaps = 16/233 (6%)
Query: 96 ENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVIL 155
+ + L AG + ++LV+ L L ++ + G+ A L
Sbjct: 72 DELRQLLLWAGRPAGIGAEEFYFLQLVLAFS-LALPLLGLHGWT------------AAAL 118
Query: 156 IGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQS 215
+G P W+ V +R ++R P + LL C+E+G+ + +A+RRVA + G
Sbjct: 119 GFLLGLWLPRAWLRRRVSERTRILRRELPRFVHLLATCLEAGLGLTEAVRRVAAESPGL- 177
Query: 216 VPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVL 275
L+ EML + E++ Q A+ + R + ++ AL QS R+G SI + LR
Sbjct: 178 --LAGEMLRAVHEMAAGKPAQRAWRDLTERHESPELKEVVSALQQSHRWGVSIAEQLRFT 235
Query: 276 VSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMKD 328
+ R + +A++KA ++ VPM+ L I++I+GPA+L ++
Sbjct: 236 LRTMRERKQQQAQQKAHEASVRMRVPMVALILMPTIVIILGPAVLRLLRHFAG 288
>gi|218516408|ref|ZP_03513248.1| pilus component protein [Rhizobium etli 8C-3]
Length = 121
Score = 137 bits (346), Expect = 2e-30, Method: Composition-based stats.
Identities = 78/121 (64%), Positives = 97/121 (80%)
Query: 206 RVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYG 265
RV+E++G QS PL+EEM+LT AELSFLP+R+VA EN RTQ++ VR+ TQALIQ+DRYG
Sbjct: 1 RVSEELGEQSPPLAEEMVLTTAELSFLPDRRVALENLATRTQIELVRSVTQALIQADRYG 60
Query: 266 TSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDT 325
T + +LRVL E R ER+ EAEKKAA+L PKLTVPMI+FFLPVLI VI+GPA + + D
Sbjct: 61 TPVAQALRVLAQEGRDERMNEAEKKAAALPPKLTVPMILFFLPVLIAVILGPAGIQVADK 120
Query: 326 M 326
Sbjct: 121 F 121
>gi|318604217|emb|CBY25715.1| type II/IV secretion system protein TadC,associated with Flp pilus
assembly [Yersinia enterocolitica subsp. palearctica
Y11]
Length = 274
Score = 137 bits (345), Expect = 2e-30, Method: Composition-based stats.
Identities = 55/214 (25%), Positives = 105/214 (49%), Gaps = 3/214 (1%)
Query: 110 EYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWIS 169
+ L+ ++ ++L++ + LI+ I L + + V +I + P V +
Sbjct: 61 PFILHNIIYLKLIIAVTILIITAILATF--DLFSINLKNILVMVTIILIMTLYFPKVIVK 118
Query: 170 NLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAEL 229
N+V KR S+ R+ P +D+ CV+SG++ID +L A+ + LS ML
Sbjct: 119 NIVAKRTKSLLRSLPFFIDITAACVQSGMTIDNSLSYSAKKFELINADLSLIMLKVTRR- 177
Query: 230 SFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEK 289
+ + + A + F + +R AL S +G ++ + L L + R +L+ E+
Sbjct: 178 AEINGLENAIKEFNQSSTELEIRMFCSALQYSISFGATVYEQLIKLSKDMREMQLLVTEE 237
Query: 290 KAASLGPKLTVPMIIFFLPVLILVIIGPAILSII 323
K + L KLT+P+ +F L I+++I P++L +I
Sbjct: 238 KISKLTAKLTIPLFLFILIPFIVLVISPSVLELI 271
>gi|303241938|ref|ZP_07328431.1| Type II secretion system F domain protein [Acetivibrio
cellulolyticus CD2]
gi|302590493|gb|EFL60248.1| Type II secretion system F domain protein [Acetivibrio
cellulolyticus CD2]
Length = 289
Score = 137 bits (345), Expect = 2e-30, Method: Composition-based stats.
Identities = 60/275 (21%), Positives = 118/275 (42%), Gaps = 11/275 (4%)
Query: 55 LRKQQITSLQKDSASSRLRTRDSKSLRNFVKKL-NLKAILVDENIVNKLRAAGFRSEYSL 113
++K + + S+ T + L+ ++ L E + L A S+
Sbjct: 24 IKKIDSKNFASNLYFSKAVTVEESFLKRLKNRIIRLMGNEYQEKMRIMLLQA-DMENVSV 82
Query: 114 NILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQ 173
+L ++ +I L I + GY +L V I + GF P +I V
Sbjct: 83 ETVLFTSIIASVIAATLFSIILTGYGNIL------AVFGFIAGAFTGFKIPEAYIKRKVD 136
Query: 174 KRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLP 233
KR+ + ++LL ++G++ + A+ R+A++ + L++E+ E
Sbjct: 137 KRKDILNATILYYVELLSTACQAGLNTENAIERIADN---TNSILADEIKRIWKESYKTK 193
Query: 234 NRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAAS 293
R+ A ++ R + VR +++ Q GT + D L+ RS E KK
Sbjct: 194 TREEAIQDMIQRCGTNEVRLFMESVGQGLEMGTPVTDILKDQARSIRSRAKSEIVKKGEL 253
Query: 294 LGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMKD 328
K+ PMI+F LP ++LV + PA+++++ +++
Sbjct: 254 AKVKIVFPMILFLLPSVLLVALTPALITLMKIIQE 288
>gi|182436318|ref|YP_001824037.1| putative integral membrane protein [Streptomyces griseus subsp.
griseus NBRC 13350]
gi|326776948|ref|ZP_08236213.1| Type II secretion system F domain protein [Streptomyces cf. griseus
XylebKG-1]
gi|178464834|dbj|BAG19354.1| putative integral membrane protein [Streptomyces griseus subsp.
griseus NBRC 13350]
gi|326657281|gb|EGE42127.1| Type II secretion system F domain protein [Streptomyces cf. griseus
XylebKG-1]
Length = 295
Score = 137 bits (345), Expect = 2e-30, Method: Composition-based stats.
Identities = 60/289 (20%), Positives = 118/289 (40%), Gaps = 26/289 (8%)
Query: 14 LAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLR 73
L +A+ ++++ I+ + + +L + +VA+E R + S +
Sbjct: 3 LLLALVIGLAVYGAIHGIRM-YRADAKLPGDL-AVALESGASR--------TSAVGSGID 52
Query: 74 TRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGII 133
+ ++ + KA+ ++ AG +L+ R V + ++
Sbjct: 53 RLGIRWAPAVLRMMGPKAV---NKKRRQIDLAGNPGGLTLDRYAARRAVYGALGVLGAF- 108
Query: 134 WIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLIC 193
+ ++ +L+ G I + ++ R+ I+R PD LD+L +
Sbjct: 109 ---------SMLLRGQLFLALLMVAFGLFWVEAGIWSAIRVRREHIERTLPDFLDVLAVV 159
Query: 194 VESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRN 253
V +G+ QAL RVAE G P S+E+ +T+ ++ +R+ AFE R + V
Sbjct: 160 VSAGLGFRQALDRVAEKYEG---PWSDELRITLRQMDMGVSRRQAFEELRRRNDSEQVAM 216
Query: 254 ATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPM 302
L Q + G I ++L + ++ R A +KAA PK T +
Sbjct: 217 FVTTLQQGEELGAPIVETLIQIANDMRRTDAQNARRKAARAVPKATFAV 265
>gi|307332439|ref|ZP_07611503.1| Type II secretion system F domain protein [Streptomyces
violaceusniger Tu 4113]
gi|306881908|gb|EFN13030.1| Type II secretion system F domain protein [Streptomyces
violaceusniger Tu 4113]
Length = 295
Score = 137 bits (345), Expect = 3e-30, Method: Composition-based stats.
Identities = 53/224 (23%), Positives = 99/224 (44%), Gaps = 13/224 (5%)
Query: 98 IVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIG 157
+ ++ AG +++ R V + ++ + LL
Sbjct: 74 VRRRIDLAGNPGGLTVDRYAARRAVYGALGFGGALVMLIKGQVLLALLLVA--------- 124
Query: 158 YVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVP 217
G V I V++R+ +I+R PD LD+L + V +G+S QAL RVAE G P
Sbjct: 125 -FGLFWIEVGIWAAVRERKDAIERTLPDFLDVLAVVVSAGLSFRQALDRVAEKYEG---P 180
Query: 218 LSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVS 277
++E+ +T+ ++ +R+ AFE R + V AL Q + G I ++L + +
Sbjct: 181 WADELRITLRQMDMGVSRRHAFEELRKRNDSEQVAQFVTALQQGEELGAPIVETLIAIAN 240
Query: 278 ETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILS 321
+ R A ++AA PK T+ + F +P +++++ +
Sbjct: 241 DMRRTDAQNARRRAARAVPKATMVITTFMVPGTMVLLVAGFFIG 284
>gi|194366101|ref|YP_002028711.1| type II secretion system protein [Stenotrophomonas maltophilia
R551-3]
gi|194348905|gb|ACF52028.1| type II secretion system protein [Stenotrophomonas maltophilia
R551-3]
Length = 311
Score = 136 bits (344), Expect = 3e-30, Method: Composition-based stats.
Identities = 61/313 (19%), Positives = 126/313 (40%), Gaps = 11/313 (3%)
Query: 15 AVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRT 74
A + + + + I + I E R A + L+ ++ + + L
Sbjct: 5 AWFALSLLVLAAGIALLGIGGWVRSHREHRTS--ATLKTALQPREEARDNETTQRDSLGW 62
Query: 75 RDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIW 134
+ + L+A L+ L AG+ + I L + L+L ++
Sbjct: 63 --LERFGRALSGGRLEAALLANEDRLLLDLAGWNTRRGTAIYLG-------LRLLLALLV 113
Query: 135 IFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICV 194
+ + + ++ VI G P +S+ V++R+ ++ + P +DLL +
Sbjct: 114 LALALAVSDATGLAKIMVVIGALAAGLLLPKFVLSSWVKRRRRAVDKELPLLIDLLRLLQ 173
Query: 195 ESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNA 254
G S+DQ+L+ + + + L E+ + R + D + +
Sbjct: 174 GVGFSMDQSLQTLGDKLRDALPVLGGELQEANVAYTHGRTRAQSLRRLSEVYADDDLSSL 233
Query: 255 TQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVI 314
Q ++Q +G ++ + LR R +R ++K L K+TV M++ LP L+LV+
Sbjct: 234 MQLILQVHAHGGAVQEPLRQFSIRLREQRRNTLKEKVGKLSVKMTVVMMLTLLPALMLVL 293
Query: 315 IGPAILSIIDTMK 327
GPA++++ TM
Sbjct: 294 AGPALVALATTMS 306
>gi|302536567|ref|ZP_07288909.1| integral membrane protein [Streptomyces sp. C]
gi|302445462|gb|EFL17278.1| integral membrane protein [Streptomyces sp. C]
Length = 292
Score = 136 bits (344), Expect = 4e-30, Method: Composition-based stats.
Identities = 47/217 (21%), Positives = 98/217 (45%), Gaps = 13/217 (5%)
Query: 99 VNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGY 158
++ AG + +++ R V + + + + ++ +L+
Sbjct: 71 RRQIDMAGNPAGLTIDRYAARRAVYGFLGGLGALAML----------MNGKLVPALLMIA 120
Query: 159 VGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPL 218
G + + ++ R+ +I+R PD LD+L + V +G+ QAL RVA G P
Sbjct: 121 FGLFWIEAGLWSAIRIRRDNIERTLPDFLDVLAVVVSAGLGFRQALERVAGKYEG---PW 177
Query: 219 SEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSE 278
++E+ +T+ ++ +R+ AF+ R + V AL Q + G+ I ++L + +
Sbjct: 178 ADEIRITLQQMDMGVSRRQAFDELRRRNDSEQVAQFVTALQQGEELGSPIVETLIAIAED 237
Query: 279 TRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVII 315
R A ++AA PK T + +F LP +++++
Sbjct: 238 MRRTDAQNARRRAARAVPKATFAVTMFMLPGTLILLV 274
>gi|238796992|ref|ZP_04640496.1| Type II secretion system protein [Yersinia mollaretii ATCC 43969]
gi|238719252|gb|EEQ11064.1| Type II secretion system protein [Yersinia mollaretii ATCC 43969]
Length = 267
Score = 136 bits (343), Expect = 4e-30, Method: Composition-based stats.
Identities = 54/220 (24%), Positives = 105/220 (47%), Gaps = 3/220 (1%)
Query: 110 EYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWIS 169
+ L+ + +L+ I L+ + + VG ++LI P + I
Sbjct: 51 PFLLSNIFYFKLLTISIALVTTAALVLTDMMTVNLKNIATVGLIVLIAIS--YLPKMIIK 108
Query: 170 NLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAEL 229
++ KR SI ++ P +D+ CV+SG++ID +L A+ + +S ML +
Sbjct: 109 KIITKRTESILKSLPFFIDITAACVQSGMTIDNSLSYSAKKFKLINADISFIMLKMT-KR 167
Query: 230 SFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEK 289
+ + A + + T +R AL S +G+++ D L L + R +L+ E+
Sbjct: 168 GEINGLESAIKELHQCTTAKEIRMFCSALQYSISFGSTVYDQLTKLSQDIREMQLLVTEE 227
Query: 290 KAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMKDH 329
+ + L KLT+P+ +F L I+++I P+IL II ++++
Sbjct: 228 RISKLSAKLTIPLFLFILIPFIVLVISPSILEIITYVQNN 267
>gi|302542847|ref|ZP_07295189.1| putative integral membrane protein [Streptomyces hygroscopicus ATCC
53653]
gi|302460465|gb|EFL23558.1| putative integral membrane protein [Streptomyces himastatinicus
ATCC 53653]
Length = 297
Score = 136 bits (343), Expect = 4e-30, Method: Composition-based stats.
Identities = 50/224 (22%), Positives = 102/224 (45%), Gaps = 13/224 (5%)
Query: 98 IVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIG 157
+ ++ AG +++ R V ++ ++ + + ++ +L+
Sbjct: 76 VRRRIDLAGHPGGLTVDRYAARRAVYGMLGFGGALVML----------MRGQLLLAVLLV 125
Query: 158 YVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVP 217
G V I V++R+ +I R PD LD+L + V +G+ QAL RV+E G P
Sbjct: 126 VFGLFWIEVGIWAAVRERKDAIDRTLPDFLDVLAVVVSAGLGFRQALDRVSEKYEG---P 182
Query: 218 LSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVS 277
++E+ +T+ ++ +R+ AFE R + V AL Q + G I ++L + +
Sbjct: 183 WADELRITLRQMDMGVSRRQAFEELRKRNDSEQVAQFVTALQQGEELGAPIVETLIAIAN 242
Query: 278 ETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILS 321
+ R A ++AA PK T+ + F +P +++++ +
Sbjct: 243 DMRRTDAQNARRRAARAVPKATMVITTFMVPGTMVLLVAGFFIG 286
>gi|33600815|ref|NP_888375.1| hypothetical protein BB1830 [Bordetella bronchiseptica RB50]
gi|33568415|emb|CAE32327.1| putative membrane protein [Bordetella bronchiseptica RB50]
Length = 328
Score = 135 bits (341), Expect = 8e-30, Method: Composition-based stats.
Identities = 52/299 (17%), Positives = 115/299 (38%), Gaps = 2/299 (0%)
Query: 30 AVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNL 89
V + + ++R ++V R + + ++ ++ L
Sbjct: 27 VVGVALVARAGRQQRSRAVVDRALAARDGHVAEPPP-AGRMAAVASAAEHAGAKLEHGKL 85
Query: 90 KAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLR 149
L+ + + A GFR+ + + + + L W+ + E P
Sbjct: 86 GDSLLAIDDRKLIDACGFRNP-ARARAWFMLARLLLAGLAPLAAWLVLRARHAEMPLAYV 144
Query: 150 VGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAE 209
AV L +G+ P + + +R+ + P +DLL + G+S+DQ++ + +
Sbjct: 145 ACAVFLGFGLGWMVPKWMLLRRIARRRECAEAELPLFIDLLRLLQGVGLSVDQSMHVLIQ 204
Query: 210 DIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIG 269
D L E+ + + + R+ + D + + ++Q DR+G ++
Sbjct: 205 DFRSVMPVLGGELKIAAEQYARGRTREQSLSRLAQGFDNDDLSAICRLIVQVDRHGGAVQ 264
Query: 270 DSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMKD 328
D L R R +E + + A L K+T M++ LP L+++ G ++++ M
Sbjct: 265 DPLARFAERVRERRRLELKARVARLTVKMTGVMVVTLLPALLIITGGSGFVALLRGMSQ 323
>gi|262360786|gb|ACY57507.1| hypothetical protein YPD4_0598 [Yersinia pestis D106004]
Length = 193
Score = 135 bits (341), Expect = 8e-30, Method: Composition-based stats.
Identities = 41/182 (22%), Positives = 87/182 (47%), Gaps = 5/182 (2%)
Query: 149 RVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVA 208
+ +L P + I N + KR +++ ++ P +D+ CV+SG++I+ +L
Sbjct: 14 LLTIGLLSIISTLYLPRMIIKNALTKRTNNLLKSLPFFIDITAACVQSGMTIENSLNYTT 73
Query: 209 EDIGGQSVPLSEEMLLTI--AELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGT 266
+ + L M AE++ L N + + ++ L S +G+
Sbjct: 74 QKFQTINTDLCLIMSKVTKRAEINGLENAIKELQYYSPAI---EMKMFCSTLQYSISFGS 130
Query: 267 SIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
++ + L L + R +L+ E+ + L KLT+P+ +F L +L++I P+IL +++ +
Sbjct: 131 TVYEQLTHLSQDMREMQLLMTEESISKLSTKLTLPLFLFILIPFVLLVISPSILELLNYV 190
Query: 327 KD 328
K+
Sbjct: 191 KN 192
>gi|156975614|ref|YP_001446521.1| hypothetical protein VIBHAR_03347 [Vibrio harveyi ATCC BAA-1116]
gi|156527208|gb|ABU72294.1| hypothetical protein VIBHAR_03347 [Vibrio harveyi ATCC BAA-1116]
Length = 187
Score = 135 bits (340), Expect = 1e-29, Method: Composition-based stats.
Identities = 34/159 (21%), Positives = 77/159 (48%), Gaps = 1/159 (0%)
Query: 164 PSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEML 223
P + + + + + P LD++ +CV++ ++I+ + +A+++ L ++
Sbjct: 21 PDLLLEMRKRMLVRKVSKNLPYVLDIMSVCVQTCMTIEASFAYLAQELKIFDKDLCYQIN 80
Query: 224 LTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSER 283
T +E + + A + R + + +IQ+ YG S+ + L L + R +
Sbjct: 81 KT-SEAGKVHGIEKALHDLSVRLPAPEINSFVLTIIQNLHYGASVANVLSDLAEDMRRIK 139
Query: 284 LMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
L+E E+K L K++VP+I+ + +++ I+ P L I
Sbjct: 140 LLEIEEKMGKLSAKMSVPLILLIMFPIVIFILAPGFLQI 178
>gi|190574783|ref|YP_001972628.1| putative transmembrane type II secretion protein [Stenotrophomonas
maltophilia K279a]
gi|190012705|emb|CAQ46333.1| putative transmembrane type II secretion protein [Stenotrophomonas
maltophilia K279a]
Length = 311
Score = 133 bits (336), Expect = 3e-29, Method: Composition-based stats.
Identities = 63/310 (20%), Positives = 127/310 (40%), Gaps = 14/310 (4%)
Query: 22 VSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLR 81
++ L+ A + LG + ++S +R + ++++ + RDS
Sbjct: 7 FALSLLVLAAGVALLG---IAGWVRSHREQRTSATLKTALQPREEARDTEAARRDSLGWL 63
Query: 82 NFVKKL----NLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFG 137
+ L++ L+ L AG+ + I L + L+LG++ +
Sbjct: 64 ERFGRALSGGRLESALLANEDRLLLDLAGWNTRRGTAIYLG-------LRLLLGVLVLVL 116
Query: 138 YDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESG 197
R+ VI G P +S+ V++R+ ++ P +DLL + G
Sbjct: 117 ALAFSSTQGLARMMVVIGALAAGLLLPKFILSSWVKRRRRAVDNELPLLIDLLRLLQGVG 176
Query: 198 ISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQA 257
S+DQ+L+ + + + L E+ + R + D + + Q
Sbjct: 177 FSMDQSLQTLGDKLRDALPVLGGELQEANVAYTHGRTRAQSLRRLSEVYADDDLTSLMQL 236
Query: 258 LIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGP 317
++Q +G ++ + LR R +R ++K L K+TV M++ LP L+LV+ GP
Sbjct: 237 ILQVHAHGGAVQEPLRQFSIRLREQRRNTLKEKVGKLSVKMTVVMMLTLLPALMLVLAGP 296
Query: 318 AILSIIDTMK 327
A++++ TM
Sbjct: 297 ALVALATTMS 306
>gi|296133931|ref|YP_003641178.1| Type II secretion system F domain protein [Thermincola sp. JR]
gi|296032509|gb|ADG83277.1| Type II secretion system F domain protein [Thermincola potens JR]
Length = 294
Score = 133 bits (335), Expect = 4e-29, Method: Composition-based stats.
Identities = 37/198 (18%), Positives = 81/198 (40%), Gaps = 3/198 (1%)
Query: 126 IFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPD 185
L+ + F L + +++ + + + ++ ++ I P
Sbjct: 97 AALMTASAFFFSITYLAGEAEYSFLVFGLILSALLYYWVDKDLEKKLKMKKRQILIELPG 156
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
++ L + + +G+ A+ +V D PL +EM +A++ A+E+F R
Sbjct: 157 FINTLALLINAGLPFSSAVHKVVHD-SDPDRPLYKEMNYVLADIGAGKPIHQAYEDFARR 215
Query: 246 TQMDCVRNATQALIQSDRYG-TSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMII 304
++ + +IQ+ G I LR L E +R A K+ KL PM++
Sbjct: 216 CRIPEITRFVSTIIQNLNRGNGDIVYVLRTLAQEAWEKRKDIARKQGEEASSKLVFPMVM 275
Query: 305 FFLPVLILVIIGPAILSI 322
+ ++++ PAI+++
Sbjct: 276 -VFIAVAIIVLAPAIMTM 292
>gi|330938347|gb|EGH41975.1| type II secretion system protein [Pseudomonas syringae pv. pisi
str. 1704B]
Length = 204
Score = 133 bits (334), Expect = 5e-29, Method: Composition-based stats.
Identities = 44/205 (21%), Positives = 88/205 (42%), Gaps = 4/205 (1%)
Query: 124 PIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAW 183
P+ +++ I+ + K ++ P + A I G+ P ++ + ++RQ +
Sbjct: 4 PVGLMVIVILGQLLFFKGIQQP----LIAPIFALGAGYLLPKRILATVARRRQKQVVVEI 59
Query: 184 PDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFY 243
+ LL I ESG++++QALR ++ + LSEE+ + + +
Sbjct: 60 STFIPLLRILFESGMAVEQALRVLSNEGKDLLPVLSEEIRVVLMRVDSGLELGEELRKTA 119
Query: 244 NRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMI 303
+D + + L Q G SL L RL ++ + L K++V M+
Sbjct: 120 ALLDVDELSDTCVILNQLIHQGGGALKSLLTLKQLIDDRRLTRLQEYISKLSAKMSVVMM 179
Query: 304 IFFLPVLILVIIGPAILSIIDTMKD 328
+F P L++V+ GP ++I +
Sbjct: 180 VFLFPALLIVLAGPGFMAISRALGS 204
>gi|260892665|ref|YP_003238762.1| Type II secretion system F domain protein [Ammonifex degensii KC4]
gi|260864806|gb|ACX51912.1| Type II secretion system F domain protein [Ammonifex degensii KC4]
Length = 269
Score = 133 bits (334), Expect = 5e-29, Method: Composition-based stats.
Identities = 61/259 (23%), Positives = 115/259 (44%), Gaps = 15/259 (5%)
Query: 70 SRLRTRDSKSLRNFVKKLNLKAILVDE--NIVNKLRAAGFRSEYSLNILLVVRLVVPIIF 127
+R + + R + + +K + +E + KL AG + + L + +F
Sbjct: 21 ARALPKGKREWREVLTRTGVKLVPAEELTALGAKLVRAGLSITPAEFVGARALLCLGFVF 80
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
+L + ++FG D V+ + + AP +W+++ V +R++ I+R PD
Sbjct: 81 SVLPLCFLFGVDFF----------WVVFFLPLLWFAPVLWLNSRVARRKALIRRQLPDFS 130
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQ 247
L + +G + ALR +GG P+ EE+ + E N A E+ +R
Sbjct: 131 VFLATALTAGADLPTALREAGTHVGG---PIGEEVERVLLEFGLGRNLVSALEDMADRCD 187
Query: 248 MDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFL 307
MD +R + ++ YGTS+ + +R RS R E + A L L P++ F L
Sbjct: 188 MDELRLLLWSAGRAYAYGTSVAEEVRAQADRQRSMRRFEVMEAAGKLAIYLIFPILFFML 247
Query: 308 PVLILVIIGPAILSIIDTM 326
L++V++ PA +++
Sbjct: 248 LPLMVVVMYPAAVALYQAF 266
>gi|308176986|ref|YP_003916392.1| type II secretion system protein F [Arthrobacter arilaitensis
Re117]
gi|307744449|emb|CBT75421.1| putative type II secretion system protein F [Arthrobacter
arilaitensis Re117]
Length = 313
Score = 133 bits (334), Expect = 5e-29, Method: Composition-based stats.
Identities = 45/236 (19%), Positives = 94/236 (39%), Gaps = 5/236 (2%)
Query: 84 VKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLE 143
+K+L + + +L AAG + S+ +V + L+ G ++
Sbjct: 76 IKRLASLHSPSADTLRKRLDAAGL--DMSVIDYRSQEIVYALTGLVAGSAFMAFAAIQYR 133
Query: 144 YPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQA 203
L V V+ G +G+ W+ + +R I +P ++L + V +G S A
Sbjct: 134 VSLVLSVLVVVGFGIIGYAMRGWWLGEQINRRARKILTQFPTVAEVLALTVGAGESTTGA 193
Query: 204 LRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDR 263
+ R++ G + +E T+ ++ A ++ +R Q+ + A++ +
Sbjct: 194 IERISRICHG---VIGDEFTKTLNDIHAGTPMVQAMQHMSDRMQVGAMTRFVDAIVVATE 250
Query: 264 YGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAI 319
GT + LR + R E + A + VP++ LP+ I+ + P +
Sbjct: 251 RGTPLAQVLRDQAQDVRDASKRELMEVAGKREISMLVPVVFGILPLTIVFAVFPGL 306
>gi|325963896|ref|YP_004241802.1| Flp pilus assembly protein TadB [Arthrobacter phenanthrenivorans
Sphe3]
gi|323469983|gb|ADX73668.1| Flp pilus assembly protein TadB [Arthrobacter phenanthrenivorans
Sphe3]
Length = 313
Score = 132 bits (333), Expect = 6e-29, Method: Composition-based stats.
Identities = 58/318 (18%), Positives = 110/318 (34%), Gaps = 16/318 (5%)
Query: 9 FDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKR----MKSVAVEREILRKQQITSLQ 64
+ V ++ +++ P + + L +R +KS +E +L +
Sbjct: 4 ISPAAVISGFVMGVGLWLIVF--RSPLMRATTLTERIEPQLKSQNLESRLLNSGEQNLTP 61
Query: 65 KDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVP 124
LR ++ + KLN +L AG S +L+
Sbjct: 62 FGPLERILRPVFRDAMAA-LGKLNPSPG----ATTRRLAQAGINK--SSLEFRAEQLLWA 114
Query: 125 IIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWP 184
+ L AV+ GF W+ V++R++ + +P
Sbjct: 115 AAGFAAALGVTAIGAAAGRVNPLLAAVAVMGSAVGGFILRDYWLGAQVKRRETRMMAEFP 174
Query: 185 DALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYN 244
+L+ + V +G S AL RV G LS E +AE A + F
Sbjct: 175 SLAELMALAVSAGESATGALDRVCRSAKG---ELSREFSNILAETRAGKPLVQALQEFSA 231
Query: 245 RTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMII 304
RT + + ++ + GT + D LR + R + + A + VP++
Sbjct: 232 RTDLAPLVRFVDGIVVAVERGTPLADVLRAQAQDVRDTAKRDLMEAAGKKEIAMMVPLVF 291
Query: 305 FFLPVLILVIIGPAILSI 322
LP+ ++ + P + +I
Sbjct: 292 GVLPLTVVFAVFPGLAAI 309
>gi|294631144|ref|ZP_06709704.1| integral membrane protein [Streptomyces sp. e14]
gi|292834477|gb|EFF92826.1| integral membrane protein [Streptomyces sp. e14]
Length = 295
Score = 132 bits (332), Expect = 8e-29, Method: Composition-based stats.
Identities = 53/217 (24%), Positives = 93/217 (42%), Gaps = 13/217 (5%)
Query: 99 VNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGY 158
K+ AG +++ R + G L + + + +L+
Sbjct: 75 RRKIDLAGNPGGLTIDRYAARR----------AVYGFLGGVGGLVFVLRGQYFVALLLFA 124
Query: 159 VGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPL 218
G V I + ++ R+ I+R PD LD+L + V +G+ QAL RVA G P
Sbjct: 125 FGALWTEVGIWSAIRIRKDVIERTLPDFLDVLAVVVSAGLGFRQALDRVAARYEG---PW 181
Query: 219 SEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSE 278
++E+ +T+ ++ +R+ AF R + V AL Q + G I D+L L +
Sbjct: 182 ADELRITLRQMDLGMSRRQAFAELRRRNDSEQVAMFVTALQQGEELGAPIVDTLVSLAKD 241
Query: 279 TRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVII 315
R A +KAA PK T+ + F +P ++++
Sbjct: 242 MRRTDAQNARRKAARAVPKATMMITTFMVPATMILLA 278
>gi|283787697|ref|YP_003367562.1| tight adherence protein C [Citrobacter rodentium ICC168]
gi|282951151|emb|CBG90842.1| putative tight adherence protein C [Citrobacter rodentium ICC168]
Length = 283
Score = 132 bits (332), Expect = 8e-29, Method: Composition-based stats.
Identities = 54/263 (20%), Positives = 114/263 (43%), Gaps = 10/263 (3%)
Query: 76 DSKSLRNFVKKLNLKAILVDE---------NIVNKLRAAGFRSEYSLNILLVVRLVVPII 126
K ++ F +++N+ V E + LR G + + + L ++
Sbjct: 22 QRKRIKAFRERINIAEQPVPETEDIIAGETSTEKLLRRNGKGIVIASMLDKNIALKAAVV 81
Query: 127 FLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDA 186
I ++ + +L + +++ + P ++ R I P
Sbjct: 82 IFIAIVLQLLEKFDILTLSATVMACVLLVSLLLVILLPGKIKKMIIDSRVRRICNDLPYI 141
Query: 187 LDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRT 246
+D++ ICV+SG++I+ +R +AE+ + +S + TI ++ A + YN
Sbjct: 142 IDIMAICVQSGMTIENTIRYLAENTETINPDISVLLARTIMKMEV-SGMSEALDLLYNEV 200
Query: 247 QMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFF 306
+R L QS ++G+SI L L E R +L+ ++K +SL K+++PMII
Sbjct: 201 PSQEIRMLASTLQQSIKFGSSIYLLLLDLSREIREMQLLAIDEKISSLAAKMSLPMIICI 260
Query: 307 LPVLILVIIGPAILSIIDTMKDH 329
+ +++++ GP ++ I+
Sbjct: 261 MFPILVLVAGPGVIRIVALWSGQ 283
>gi|255327037|ref|ZP_05368113.1| type II secretion system protein [Rothia mucilaginosa ATCC 25296]
gi|255296254|gb|EET75595.1| type II secretion system protein [Rothia mucilaginosa ATCC 25296]
Length = 310
Score = 132 bits (332), Expect = 8e-29, Method: Composition-based stats.
Identities = 57/311 (18%), Positives = 121/311 (38%), Gaps = 11/311 (3%)
Query: 11 ATELAVAITTAVSIFSLIYAVVI--PSLGSGELEKRMKSVAVEREILRKQQITSLQKDSA 68
L + A + ++ +V+ S + +++ + +L++Q+ A
Sbjct: 2 NLPLIFGLLLAAGVGLILSSVLNTRSISFSDRVASQLRGETLRESLLKEQERREPSLLEA 61
Query: 69 SSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFL 128
S +SL + + +L V E +LR AG S S++ +L+ + +
Sbjct: 62 ISAFCAPLLRSLSSSLSGSSLSDSSVQE----RLRRAG--SSQSVSAFRAEQLLWALAGV 115
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
+ + + + V++ G GF A W+ V KR+ + +P +
Sbjct: 116 TVMSALTVIGVVQERFSILVALMLVLVSGLSGFLARDWWLGEAVTKREKQLVAEFPALAE 175
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
++ + V +G S AL R+ G L+ E +A+ + A + F RT++
Sbjct: 176 MMALSVTAGESALAALERICLTSRG---ELAREFSEILAQTRTGVSLLSALQEFAERTRV 232
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP 308
+ + + + GT + D LR + R E + A + P++ F LP
Sbjct: 233 PALSRFVEGIAVAIERGTPLADVLRAQAQDVRDNAKRELMETAGKKEIAMLAPVVFFILP 292
Query: 309 VLILVIIGPAI 319
+ ++ + P +
Sbjct: 293 LTVIFAVFPGL 303
>gi|311105395|ref|YP_003978248.1| type II secretion system protein F domain-containing protein 2
[Achromobacter xylosoxidans A8]
gi|310760084|gb|ADP15533.1| bacterial type II secretion system protein F domain protein 2
[Achromobacter xylosoxidans A8]
Length = 290
Score = 132 bits (332), Expect = 9e-29, Method: Composition-based stats.
Identities = 50/187 (26%), Positives = 94/187 (50%), Gaps = 2/187 (1%)
Query: 141 LLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISI 200
LL+ + + AP +W+ +L KR+ SI+R P D++ +CVE+G+S+
Sbjct: 106 LLQAQSWGWIPWAVASALGAGAAPGLWLRSLSVKRRRSIERDLPFVFDMMTLCVEAGLSV 165
Query: 201 DQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQ 260
AL+ A+ G + L + + +AE+ +R A + R+ RN AL Q
Sbjct: 166 HGALQMAAQ--SGPAGILRDALADALAEMRAGVSRTAAIKALAERSNSPLARNWAAALAQ 223
Query: 261 SDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAIL 320
++ G S+G LR +++RS+R + AE+ A K+ +P+I P +V+ P ++
Sbjct: 224 AEALGISLGPVLRAQAAQSRSDRHVRAEQLAMQAPVKMLLPLIGCIFPCTFIVLAFPVMV 283
Query: 321 SIIDTMK 327
++ + +
Sbjct: 284 QLLQSAQ 290
>gi|329943876|ref|ZP_08292147.1| bacterial type II secretion system protein F domain protein
[Actinomyces sp. oral taxon 170 str. F0386]
gi|328531582|gb|EGF58418.1| bacterial type II secretion system protein F domain protein
[Actinomyces sp. oral taxon 170 str. F0386]
Length = 292
Score = 131 bits (331), Expect = 1e-28, Method: Composition-based stats.
Identities = 74/305 (24%), Positives = 134/305 (43%), Gaps = 23/305 (7%)
Query: 16 VAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTR 75
V+I TA++ F L+ RM S R + ++ + S +K S +L R
Sbjct: 4 VSILTALAAFILVLCAAQGV--------RMVSYDAARSLSMEENVASQEKGSLVIKLVDR 55
Query: 76 DSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWI 135
+ + ++L+ AG+ + + + R ++ I+ +++
Sbjct: 56 AGLRFSRLLSGAYGPRRRA--RLESRLKRAGYPAGLTQRKFIQ-RETGFVVLGIIVLLFC 112
Query: 136 FGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVE 195
F D+L+ + +G + VW++N +R I R PD LD+L + V
Sbjct: 113 FLIDELI---------IGVGLGLLLAFWMQVWLTNTGLRRSQQIDRDLPDFLDVLSVTVR 163
Query: 196 SGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNAT 255
SG+S A+ RV+ G PL+EEM I + R+ AF + ++ + V
Sbjct: 164 SGMSFRPAVERVSSFHEG---PLAEEMRGAIYSMRLGVTRRDAFIAARDNSRSENVAIFV 220
Query: 256 QALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVII 315
A +Q++ GT + D+L + SE R ER + + AA PK+ + + LP +++I+
Sbjct: 221 SAFLQAEELGTPLADALVDISSEIRRERAQQVRRAAARAQPKIAIVVTTMILPATLILIL 280
Query: 316 GPAIL 320
G IL
Sbjct: 281 GSMIL 285
>gi|328545275|ref|YP_004305384.1| Bacterial type II secretion system protein F domain [polymorphum
gilvum SL003B-26A1]
gi|326415017|gb|ADZ72080.1| Bacterial type II secretion system protein F domain [Polymorphum
gilvum SL003B-26A1]
Length = 339
Score = 131 bits (331), Expect = 1e-28, Method: Composition-based stats.
Identities = 66/318 (20%), Positives = 135/318 (42%), Gaps = 25/318 (7%)
Query: 12 TELAVAITTAVSIFSLIYAVVIPSL-GSGELEKRMKSVAVEREILRKQQITSLQKDSASS 70
T +AVA+ A SI +IYA+ P L GS E+R+ +A R Q + + +
Sbjct: 13 TTIAVALLAAFSIGGVIYALFEPVLSGSKRREQRLGQIAA-----RPQAASDRRPVRDAE 67
Query: 71 RLRTRDSKSLRNFVKKLNLKAILVDE-NIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLI 129
+ R L+ F +K + + + N+L AG ++ ++ +V ++FLI
Sbjct: 68 KRRKSVQDQLKEFEEKQKARQKRANSLTLTNRLEQAGL--DWERKHFIIFSIVSGLVFLI 125
Query: 130 LGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDL 189
LG + + A+ +G +GF P +++ +KR + P+A+D+
Sbjct: 126 LGFLL---------TRSPILTLAIAFVGGLGF--PRWYLARRRRKRFDAFLNELPNAVDI 174
Query: 190 LLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMD 249
++ V++G+ + ++ VA + P++ E + A +R +
Sbjct: 175 IVRGVKAGLPLGDCIKIVASEARD---PVAGEFRKIVEAQVMGLTLTEAVGRLPDRVPLA 231
Query: 250 CVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMI--IFFL 307
+ + G + ++L L R + ++ + +A S K + +I + F+
Sbjct: 232 EANFFAIVVAIQQQAGGGLSEALGNLGKVLRGRKTLKGKIRALSSEAKSSAAIIGSLPFI 291
Query: 308 PVLILVIIGPAILSIIDT 325
LIL +I P + ++ T
Sbjct: 292 VSLILYLIAPDYIMLLFT 309
>gi|317403410|gb|EFV83923.1| type II secretion system protein [Achromobacter xylosoxidans C54]
Length = 246
Score = 131 bits (330), Expect = 1e-28, Method: Composition-based stats.
Identities = 48/183 (26%), Positives = 79/183 (43%), Gaps = 2/183 (1%)
Query: 145 PFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQAL 204
A + + P W+ + R+ I+R P LD++ +CVE+G+ AL
Sbjct: 66 SGPAWAMAGGAVAFTAALLPFAWLRAQGEARRRGIERGLPFMLDMMTLCVEAGLGAHAAL 125
Query: 205 RRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRY 264
+ A + G S PL + + +A++ R A + +R V AL +D
Sbjct: 126 QAAAAN--GPSGPLRDALAGALAQVRAGVPRVAAIQAMADRCGSPLVHRWATALAHADAL 183
Query: 265 GTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIID 324
G S+G LR + RSER M AE+ A K+ +P+I P LV+ P + +
Sbjct: 184 GISLGPLLRAQAAHCRSERHMRAERLAMQAPVKMLLPLIGCIFPCTFLVLAFPIAVQLSR 243
Query: 325 TMK 327
+
Sbjct: 244 GLG 246
>gi|281356958|ref|ZP_06243448.1| Type II secretion system F domain protein [Victivallis vadensis
ATCC BAA-548]
gi|281316516|gb|EFB00540.1| Type II secretion system F domain protein [Victivallis vadensis
ATCC BAA-548]
Length = 292
Score = 131 bits (329), Expect = 2e-28, Method: Composition-based stats.
Identities = 59/227 (25%), Positives = 99/227 (43%), Gaps = 11/227 (4%)
Query: 101 KLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVG 160
KL AG+ ++ I L L + + L+ + + + V
Sbjct: 75 KLLMAGYGEVFTPGDF---------IGLKLLVYLLGLVILLIGALSGRVLICLCMAALVV 125
Query: 161 FCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSE 220
S+W+S ++ R SI +A P+ LDLL++ VESG I ALR + + PL E
Sbjct: 126 TFYSSMWLSMRIKARHLSIMKALPNVLDLLMLSVESGRDIVSALRDIL--ARRRMDPLGE 183
Query: 221 EMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETR 280
E+ ++ R A + R + + A++Q++ G SI LRV R
Sbjct: 184 ELTRAFRQMQLGRKRADALRDMAQRVRQPDLTTTVNAIVQAEELGVSIVQLLRVQGDMQR 243
Query: 281 SERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
++R AEK A K+ P++ LP +++VI GP L ++ +
Sbjct: 244 NKRFSLAEKLANEAAVKIIFPVVFCILPSVLIVIFGPLALQVLQMFR 290
>gi|33596530|ref|NP_884173.1| hypothetical protein BPP1912 [Bordetella parapertussis 12822]
gi|33566299|emb|CAE37212.1| putative membrane protein [Bordetella parapertussis]
Length = 298
Score = 130 bits (327), Expect = 3e-28, Method: Composition-based stats.
Identities = 44/159 (27%), Positives = 75/159 (47%), Gaps = 2/159 (1%)
Query: 166 VWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLT 225
+W+ +R+ I R P LDL+ +C E+G+ + AL++ A G PL E ++
Sbjct: 139 LWLRRCAARRRQRIARELPFILDLMTLCAEAGLGMHGALQQAAS--HGPPGPLRELLVQA 196
Query: 226 IAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLM 285
+ ++ R+ A + R VR AL +D G S+G LR L + R+ER
Sbjct: 197 LCDMRAGMPRRQAMQALAARADSPPVRAWVGALAHADAQGMSLGPMLRGLATRYRAERHQ 256
Query: 286 EAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIID 324
AE+ A K+ +P+I P +V+ P +++
Sbjct: 257 RAERLAMEAPVKMLLPLIACIFPCTFIVLAFPIGYALLQ 295
>gi|327538076|gb|EGF24766.1| type II secretion system protein [Rhodopirellula baltica WH47]
Length = 306
Score = 129 bits (326), Expect = 4e-28, Method: Composition-based stats.
Identities = 49/240 (20%), Positives = 100/240 (41%), Gaps = 14/240 (5%)
Query: 98 IVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIF-------------GYDKLLEY 144
+ ++ AG+ + + +L+ +++ + + +++ + L
Sbjct: 58 LRRRMMLAGYSTPAAGTLLVAATILMLVSGIFCALLFRWSGLQQVFLEGIESVPGGLSGM 117
Query: 145 PFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQAL 204
+ + + LI + P + + + R + R P A+DL E G+ D AL
Sbjct: 118 LAPVVIVSPWLIAIILASLPILVVRASRRARVLQVSRDLPLAMDLWATLSEGGLGFDAAL 177
Query: 205 RRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRY 264
R + L+ +L R VAF R + + T A+IQS++
Sbjct: 178 DRW-QRTQRPDRVLASACRGFQRDLLGGMRRSVAFRRLAGRLDVPPLTRFTAAMIQSEQM 236
Query: 265 GTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIID 324
G S+ ++LR+ + R+ER ++ A SL K +P+++ FLP L + +GP ++
Sbjct: 237 GASVSETLRLQAEDVRAERREKSMAFAQSLATKRVIPLVVCFLPGLFVWPLGPFFTQLLR 296
>gi|32477853|ref|NP_870847.1| integral membrane protein [Rhodopirellula baltica SH 1]
gi|32448410|emb|CAD77925.1| probable integral membrane protein [Rhodopirellula baltica SH 1]
Length = 306
Score = 129 bits (326), Expect = 4e-28, Method: Composition-based stats.
Identities = 52/272 (19%), Positives = 108/272 (39%), Gaps = 16/272 (5%)
Query: 68 ASSRLRTRDSKSLRNFVKKLNLKAILVDEN--IVNKLRAAGFRSEYSLNILLVVRLVVPI 125
+ R L+ V + + + + ++ AG+ + + +L+ +++ +
Sbjct: 26 RRYQRRGEALDRLQRDVTRTESSEVEESQISWLRRRMMLAGYSTPAAGTLLVAATILMLV 85
Query: 126 IFLILGIIWIF-------------GYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLV 172
+ +++ + L + + + LI + P + +
Sbjct: 86 SGIFCALLFRWSGLQQVFLEGIESVPGGLSGMLAPVVIVSPWLIAIILASLPILVVRASR 145
Query: 173 QKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFL 232
+ R + R P A+DL E G+ D AL R + L+ +L
Sbjct: 146 RARVLQVSRDLPLAMDLWATLSEGGLGFDAALDRW-QRTQRPDRVLASACRGFQRDLLGG 204
Query: 233 PNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAA 292
R VAF R + + T A+IQS++ G S+ ++LR+ + R+ER ++ A
Sbjct: 205 MRRSVAFRRLAGRLDVPPLTRFTAAMIQSEQMGASVSETLRLQAEDVRAERREKSMAFAQ 264
Query: 293 SLGPKLTVPMIIFFLPVLILVIIGPAILSIID 324
SL K +P+++ FLP L + +GP ++
Sbjct: 265 SLATKRVIPLVVCFLPGLFVWPLGPFFTQLLR 296
>gi|33601083|ref|NP_888643.1| hypothetical protein BB2100 [Bordetella bronchiseptica RB50]
gi|33575518|emb|CAE32596.1| putative membrane protein [Bordetella bronchiseptica RB50]
Length = 298
Score = 129 bits (326), Expect = 4e-28, Method: Composition-based stats.
Identities = 44/159 (27%), Positives = 75/159 (47%), Gaps = 2/159 (1%)
Query: 166 VWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLT 225
+W+ +R+ I R P LDL+ +C E+G+ + AL++ A G PL E ++
Sbjct: 139 LWLRRCAARRRQRIARELPFILDLMTLCAEAGLGMHGALQQAAS--HGPPGPLRELLVQA 196
Query: 226 IAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLM 285
+ ++ R+ A + R VR AL +D G S+G LR L + R+ER
Sbjct: 197 LCDMRAGMPRRQAMQALAARADSPPVRAWVGALAHADAQGMSLGPMLRGLATRYRAERHQ 256
Query: 286 EAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIID 324
AE+ A K+ +P+I P +V+ P +++
Sbjct: 257 RAERLAMEAPVKMLLPLIACIFPCTFIVLAFPIGYALLQ 295
>gi|114321307|ref|YP_742990.1| type II secretion system protein [Alkalilimnicola ehrlichii MLHE-1]
gi|114227701|gb|ABI57500.1| type II secretion system protein [Alkalilimnicola ehrlichii MLHE-1]
Length = 312
Score = 129 bits (326), Expect = 4e-28, Method: Composition-based stats.
Identities = 54/316 (17%), Positives = 117/316 (37%), Gaps = 9/316 (2%)
Query: 14 LAVAITTAVSIFSLIYAVV-IPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRL 72
+ ++ +F+ A+V P + R+ E ++ + D
Sbjct: 2 MVWLFVASLVLFAAGLALVVWPLWRRSQEYGRV-----EGRLMGTARGGGRDWDEPVDGR 56
Query: 73 RTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGI 132
+ R + A+ D + +LR G R + ++ +P + + G+
Sbjct: 57 SGAHTLWRRLAAGRGAAPALAQDPVLARRLRQWGLRRAGDRAAVALLVQALPWVVVAGGL 116
Query: 133 IWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLI 192
+++ L VG + L+G P ++ L RQ I A+ +L +
Sbjct: 117 GFVWISRGALT---GEDVGLLALLGLAALFLPKRVVAGLASARQMRIGEQVTTAVQILRM 173
Query: 193 CVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVR 252
++SG S+ AL VA + LS E+ L + + ++ +
Sbjct: 174 LLDSGQSVQHALGMVAVEGRELMPDLSRELDLALNRARSGEGLVEVLDGLARDLEVPELD 233
Query: 253 NATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLIL 312
+ L Q G ++ + L L + ++K + K++V M++F P L++
Sbjct: 234 DTVLILKQVVEQGGNVDEPLTRLAELINDRQRTRTQEKVTKMSAKMSVVMMLFLFPALLV 293
Query: 313 VIIGPAILSIIDTMKD 328
V+ P ++S++ +
Sbjct: 294 VLAAPGLISLVGALGG 309
>gi|330862289|emb|CBX72450.1| hypothetical protein YEW_HH31820 [Yersinia enterocolitica W22703]
Length = 203
Score = 129 bits (325), Expect = 5e-28, Method: Composition-based stats.
Identities = 55/201 (27%), Positives = 96/201 (47%), Gaps = 1/201 (0%)
Query: 123 VPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRA 182
+ I IL I I L + + V +I + P V + N+V KR S+ R+
Sbjct: 1 MIIAVTILIITAILATFDLFSINLKNILVMVTIILIMTLYFPKVIVKNIVAKRTKSLLRS 60
Query: 183 WPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENF 242
P +D+ CV+SG++ID +L A+ + LS ML + + + A + F
Sbjct: 61 LPFFIDITAACVQSGMTIDNSLSYSAKKFELINADLSLIMLKVTRR-AEINGLENAIKEF 119
Query: 243 YNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPM 302
+ +R AL S +G ++ + L L + R +L+ E+K + L KLT+P+
Sbjct: 120 NQSSTELEIRMFCSALQYSISFGATVYEQLIKLSKDMREMQLLVTEEKISKLTAKLTIPL 179
Query: 303 IIFFLPVLILVIIGPAILSII 323
+F L I+++I P++L +I
Sbjct: 180 FLFILIPFIVLVISPSVLELI 200
>gi|283457757|ref|YP_003362345.1| Flp pilus assembly protein TadC [Rothia mucilaginosa DY-18]
gi|283133760|dbj|BAI64525.1| Flp pilus assembly protein TadC [Rothia mucilaginosa DY-18]
Length = 310
Score = 129 bits (325), Expect = 6e-28, Method: Composition-based stats.
Identities = 44/222 (19%), Positives = 90/222 (40%), Gaps = 5/222 (2%)
Query: 98 IVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIG 157
+ +LR AG S S++ +L+ + + + + + + V++ G
Sbjct: 87 VQERLRRAG--SSQSVSAFRAEQLLWALAGVTVMSALTVIGVVQERFSILVALVLVLVSG 144
Query: 158 YVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVP 217
GF A W+ V KR+ + +P +++ + V +G S AL R+ G
Sbjct: 145 LSGFLARDWWLGEAVTKREKQLVAEFPALAEMMALSVTAGESALAALERICLTSRG---E 201
Query: 218 LSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVS 277
L+ E +A+ + A + F RT++ + + + + GT + D LR
Sbjct: 202 LAREFSEILAQTRTGVSLLSALQEFAERTRVPALSRFVEGIAVAIERGTPLADVLRAQAQ 261
Query: 278 ETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAI 319
+ R E + A + P++ F LP+ ++ + P +
Sbjct: 262 DVRDNAKRELMETAGKKEIAMLAPVVFFILPLTVIFAVFPGL 303
>gi|158317568|ref|YP_001510076.1| type II secretion system protein [Frankia sp. EAN1pec]
gi|158112973|gb|ABW15170.1| type II secretion system protein [Frankia sp. EAN1pec]
Length = 338
Score = 129 bits (324), Expect = 7e-28, Method: Composition-based stats.
Identities = 44/228 (19%), Positives = 89/228 (39%), Gaps = 6/228 (2%)
Query: 97 NIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILI 156
+ +L AG + V +++ + +LG + + P L A+++
Sbjct: 112 ALNRRLVQAG--GRTPVEEFRVQQVICAVAGALLGALVLAMRTLFGVGPPALVGIALVVA 169
Query: 157 GYVG-FCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQS 215
G G A W++ +++R+ + +P +LL + V +G S AL RV+
Sbjct: 170 GAAGGILARDWWLTRAIREREDRMLMEFPTVAELLALAVTAGESAIGALERVS---RLTH 226
Query: 216 VPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVL 275
L E+ L +A+ + A E RT + + + + GT + D LR
Sbjct: 227 GELGTELRLALADAHAGASLVQALEGIATRTSLPPLARFVDGMAVAIERGTPLADVLRAQ 286
Query: 276 VSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSII 323
+ R + + + +P++ LP ++ PA++S
Sbjct: 287 AVDVREAGKRQLLEAGGRKEIAMMIPVVFLILPTTVIFAFYPALVSFT 334
>gi|260768630|ref|ZP_05877564.1| type II secretion system protein [Vibrio furnissii CIP 102972]
gi|260616660|gb|EEX41845.1| type II secretion system protein [Vibrio furnissii CIP 102972]
Length = 296
Score = 128 bits (323), Expect = 8e-28, Method: Composition-based stats.
Identities = 48/249 (19%), Positives = 97/249 (38%), Gaps = 6/249 (2%)
Query: 81 RNFVKKLNLKAILVDENIVNKLRAAGFRS-EYSLNILLVVRLVVPIIFLILGIIWIFGYD 139
+ + K +V +R AG+ S + L + LV +FLIL G
Sbjct: 53 QKWWGKSKQDHHKTLSQVVLNMRQAGYISGRQQILCLFKMFLVWSGLFLILT-----GQQ 107
Query: 140 KLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGIS 199
L + L +G WI +R I A+ ++ I + G+S
Sbjct: 108 YLFSSSIERTFLYYALFMAIGALVSIRWIRMQANRRAKIIDEEMLTAVHMMAILWQVGLS 167
Query: 200 IDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALI 259
+++ L+ ++ + +++++ L IA + NR+ F + T ++ L
Sbjct: 168 LERLLKTYHQEASDLTPEMNKDIALIIARIDAGQNREWVFRDMATLTLSTGFQDLLSMLS 227
Query: 260 QSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAI 319
Q G + S + L + + ++K + K++V M+ P L +++ GPA
Sbjct: 228 QGSETGGGLKKSFQSLADLLYERKRVALQEKVTKMSGKISVTMMALMFPALFIILGGPAA 287
Query: 320 LSIIDTMKD 328
L+++
Sbjct: 288 LALMAAFGG 296
>gi|225375137|ref|ZP_03752358.1| hypothetical protein ROSEINA2194_00761 [Roseburia inulinivorans DSM
16841]
gi|225213011|gb|EEG95365.1| hypothetical protein ROSEINA2194_00761 [Roseburia inulinivorans DSM
16841]
Length = 415
Score = 128 bits (322), Expect = 1e-27, Method: Composition-based stats.
Identities = 67/260 (25%), Positives = 113/260 (43%), Gaps = 23/260 (8%)
Query: 75 RDSKSLR-NFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGII 133
DS++L F ++ K E I NKL+ + N L++P II
Sbjct: 166 CDSQTLEYQFFFQICPKIYSEKEKINNKLKQELIKKNEKTND---STLILPESIDDQTII 222
Query: 134 WIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLV---QKRQSSIKRAWPDALDLL 190
W +K P +L + +I G C P V S ++R+ ++ +P+ + L
Sbjct: 223 W---KEKSERMPLKLLLLGMIAAG----CVPLVEKSRKQEEEKRRKEKLQSEYPELVSKL 275
Query: 191 LICVESGISIDQALRRVAEDIGGQSV-------PLSEEMLLTIAELSFLPNRQVAFENFY 243
I + +G+++ A ++A + PL EEML+T E+ A+E F
Sbjct: 276 TILLGAGMTLFSAWNKIATSYSNKRKNNTIPIHPLYEEMLITCHEIESGVGEARAYERFG 335
Query: 244 NRTQMDCVRNATQALIQSDRYGT-SIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPM 302
R + R L+Q+ R GT + L VS+ ER A+K G K+ PM
Sbjct: 336 ERCGLHRYRKFCSLLVQNLRKGTRGLVQLLEQEVSDAFEERKNLAKKSGEEAGTKMLFPM 395
Query: 303 IIFFLPVLILVIIGPAILSI 322
++ ++I++I+ PA LS+
Sbjct: 396 MM-MFGIIIVIIMVPAFLSL 414
>gi|187478773|ref|YP_786797.1| pilus assembly protein [Bordetella avium 197N]
gi|115423359|emb|CAJ49893.1| putative pilus assembly protein [Bordetella avium 197N]
Length = 283
Score = 128 bits (322), Expect = 1e-27, Method: Composition-based stats.
Identities = 41/234 (17%), Positives = 92/234 (39%), Gaps = 5/234 (2%)
Query: 93 LVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGA 152
L+ ++L +R+ + + + ++ + + ++ + + +G
Sbjct: 55 LLARGSRDRLTRLAWRAAWPAEVPVAWLPAQIVLAVCVALLAAGLLMLVDVQVGLILLGP 114
Query: 153 VILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIG 212
+L G + P + ++ + + P LD++ +C+E+G + A+ A
Sbjct: 115 CVLAGVLC---PVWQLGARIRLNRVRVAADLPFLLDVMTLCLEAGQGMVNAMYLAARHC- 170
Query: 213 GQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSL 272
L+ + + E+ +++ A R + V AL Q+DR G G L
Sbjct: 171 -PPGLLTTALRQALNEMRAGRSQREALLAMAARLDVAGVHAWVAALTQADRLGGGAGGVL 229
Query: 273 RVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
R L S+ R E AE+ A K+ P++ P L++ P ++ + +
Sbjct: 230 RALASQLREEAFQRAEEAAMRAPVKMLFPLVTCMFPCTFLILAFPLVVDLAPAL 283
>gi|72162675|ref|YP_290332.1| integral membrane protein [Thermobifida fusca YX]
gi|71916407|gb|AAZ56309.1| putative integral membrane protein [Thermobifida fusca YX]
Length = 273
Score = 128 bits (322), Expect = 1e-27, Method: Composition-based stats.
Identities = 53/228 (23%), Positives = 95/228 (41%), Gaps = 14/228 (6%)
Query: 94 VDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAV 153
I ++ AAG ++ + +++ L + L
Sbjct: 50 QQAKIQARIDAAGRPEGLTVRRYAQRKAGEVLLYGTLAVFLFLQGSTTL----------- 98
Query: 154 ILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGG 213
L+ + + + +KRQ I++ PD LD+L + V +G+S QAL RVA+ + G
Sbjct: 99 ALVVLAFGTLTDLSLYSEKRKRQEEIQKQLPDFLDVLAVTVSAGLSFRQALARVADAMPG 158
Query: 214 QSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLR 273
L+ E L + ++ +R+ AF R + + AL Q++ G + +L
Sbjct: 159 ---VLASEFQLALRQMELGTSRRDAFAALRERNSNEALGRFITALQQAEELGAPLSQTLH 215
Query: 274 VLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILS 321
L ++ R E +KA L P++T LP L+L+I G +L
Sbjct: 216 ALSTDMRREDAQFLRRKAQHLNPRVTAVTAATMLPGLLLIIGGGMLLG 263
>gi|317403490|gb|EFV83996.1| flp pilus assembly protein TadC [Achromobacter xylosoxidans C54]
Length = 256
Score = 127 bits (320), Expect = 2e-27, Method: Composition-based stats.
Identities = 44/252 (17%), Positives = 99/252 (39%), Gaps = 3/252 (1%)
Query: 77 SKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNI-LLVVRLVVPIIFLILGIIWI 135
+ S + + L+ + AG+ + + + +V R + ++ +
Sbjct: 2 ADSFGKRLSEGRFAEALLAGEDRKLVDLAGYENPGTARLRFIVARFTLALLLPAAAVALD 61
Query: 136 FGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVE 195
G + + A +G+ P ++ V +R+ P +DLL +
Sbjct: 62 LG--RGIGGSSLGLFVAAFFGFAIGYMLPKWFVRRRVSRRRRQAANELPLLIDLLRLLQG 119
Query: 196 SGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNAT 255
G+SIDQ+L+ + ++ L+ E+ L R+ + D +
Sbjct: 120 VGLSIDQSLQVLIKEFAQVLPVLAYELRLASELYVRGRTREQSLARLAAGFDNDDLSAIC 179
Query: 256 QALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVII 315
+ + Q D++G ++ + L R +R +E ++K K+T MI+ LP L++V
Sbjct: 180 RLIAQVDQHGGAVQEPLNRFGERLREKRRLELKEKVGKTTVKMTAVMIVTLLPALLIVTG 239
Query: 316 GPAILSIIDTMK 327
G ++++ +
Sbjct: 240 GAGFVAVLRGLS 251
>gi|226325183|ref|ZP_03800701.1| hypothetical protein COPCOM_02975 [Coprococcus comes ATCC 27758]
gi|225206531|gb|EEG88885.1| hypothetical protein COPCOM_02975 [Coprococcus comes ATCC 27758]
Length = 303
Score = 127 bits (319), Expect = 3e-27, Method: Composition-based stats.
Identities = 58/270 (21%), Positives = 108/270 (40%), Gaps = 10/270 (3%)
Query: 52 REILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEY 111
R + + +K+ + + +KL AG +
Sbjct: 33 RARMSIAARKGMHAKPTQRMKIAEAIDRAGEAFEKVIPLKLSESRELQDKLDLAGLKITP 92
Query: 112 SLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNL 171
S + + + + ++ G + GY + + I+ G+ VW+S+
Sbjct: 93 STWRAISLGITIFTAIMLAGAALVGGYG------IAMALLVGIIGAVGGWAVCGVWLSHA 146
Query: 172 VQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELS- 230
+ R I R P AL+LL I V +G+ +++ R++AE+ PL++E T E+S
Sbjct: 147 GKTRGEEIDRYLPPALELLTISVSAGVLVERGFRQLAEN--KALGPLADEFARTDMEISH 204
Query: 231 FLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKK 290
+R A ++ R + ALI++ R GTSI L R R +
Sbjct: 205 LGVSRVDALDHMRRRCDSPLMGYFCAALIEATRKGTSISGVLESQAKLARKARYDALTAQ 264
Query: 291 AASLGPKLTVPMIIFFLPVLILVIIGPAIL 320
L K+ VP++ F L ++++I+ P I+
Sbjct: 265 INKLSTKMAVPLVFF-LIAVLVLILPPLII 293
>gi|303238717|ref|ZP_07325250.1| Type II secretion system F domain protein [Acetivibrio
cellulolyticus CD2]
gi|302593836|gb|EFL63551.1| Type II secretion system F domain protein [Acetivibrio
cellulolyticus CD2]
Length = 292
Score = 126 bits (318), Expect = 3e-27, Method: Composition-based stats.
Identities = 46/217 (21%), Positives = 103/217 (47%), Gaps = 4/217 (1%)
Query: 107 FRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSV 166
+ L + I F++L + + + ++I++ + F +
Sbjct: 76 IYGAKYSHFYLQIHWANKIAFVLLAAFLLSLFGLSSKPDVGYGFFSLIVLIAIAFLTDNE 135
Query: 167 WISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTI 226
++ V+KR++S++ +PD L+ L + + +G+++ +A ++ D S L EE+ + +
Sbjct: 136 -LNEKVKKRRTSMQLDFPDFLNKLTLLINAGMTVQRAWEKIVTDNKKNS-VLYEELSIAV 193
Query: 227 AELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYG-TSIGDSLRVLVSETRSERLM 285
A++ + A+E+F R ++ + ++Q+ + G T + LR+ SE R
Sbjct: 194 ADIRAGKSEMSAYEDFAKRCRIPEITKFVSVVLQNIKKGNTELVSILRLQASECWEMRKR 253
Query: 286 EAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
A + K+ PM+I F+ +LI+V + PAI ++
Sbjct: 254 AATRLGEEASTKMLFPMMIMFVAILIIVTV-PAIFAM 289
>gi|283778971|ref|YP_003369726.1| type II secretion system protein [Pirellula staleyi DSM 6068]
gi|283437424|gb|ADB15866.1| type II secretion system protein [Pirellula staleyi DSM 6068]
Length = 309
Score = 126 bits (318), Expect = 4e-27, Method: Composition-based stats.
Identities = 50/240 (20%), Positives = 95/240 (39%), Gaps = 14/240 (5%)
Query: 98 IVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIF-------------GYDKLLEY 144
+ L AG+R + ++ L ++ + + + + E
Sbjct: 58 LRRWLFLAGYRQPGATTFFALLTLGTTMLGGVAITFFFYSGLYQVMVVSADAVPGGVGEV 117
Query: 145 PFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQAL 204
+ +I P++ ++ QKR I++ P L+LL E+G+ D A+
Sbjct: 118 FLPAVWLSPWIILLGLSALPALVVNRSRQKRVEMIEQDLPLTLELLATLSEAGLGFDAAM 177
Query: 205 RRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRY 264
+R+ + PL+ E A+L R + +R Q+ + AL+Q+++
Sbjct: 178 QRI-QSTRLAVRPLASEFRSYQADLLAGRPRTQSLRRLSSRIQVPAISIFVSALVQAEQL 236
Query: 265 GTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIID 324
G I LR + R R A A SL K +P+++ FLP L + +GP + +
Sbjct: 237 GMGIAQVLRRQADDMRDRRRERANAFAMSLTVKRVIPLVVCFLPGLFVWTLGPFFVQLFQ 296
>gi|300021858|ref|YP_003754469.1| type II secretion system protein F [Hyphomicrobium denitrificans
ATCC 51888]
gi|299523679|gb|ADJ22148.1| Type II secretion system F domain protein [Hyphomicrobium
denitrificans ATCC 51888]
Length = 332
Score = 126 bits (317), Expect = 4e-27, Method: Composition-based stats.
Identities = 57/318 (17%), Positives = 128/318 (40%), Gaps = 31/318 (9%)
Query: 13 ELAVAITTAVSIFSLIYAVVIPSLGSGEL-EKRMKSVAVEREILRKQQITSLQKDSASSR 71
+ V + A++ IYA+ P +KR++SV + S
Sbjct: 11 RVIVPLLAALAFAGGIYALAYPYFSGDREKDKRLESVVGRSRKV------GGALSEIQSS 64
Query: 72 LRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILG 131
+ + +L+ + N K + + +L AG +++ + + I+ L
Sbjct: 65 RKKSVADTLKEMEDRQNAKKKI---TMGLRLERAGV--KWTPRDFYIGSAIAGIVLGGLC 119
Query: 132 IIWIFGYDKLLEYPFQLRVGAVILIGYVG-FCAPSVWISNLVQKRQSSIKRAWPDALDLL 190
++ L + A ++ +VG F P ++ L ++RQ+ +A+D++
Sbjct: 120 FNFL-----------NLPIAATVVALFVGAFGIPRWVVAKLTKRRQAKFTSHLANAIDVV 168
Query: 191 LICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDC 250
+ V+SG+ +++ L+ +A + PL+ E + + A + Y+R +
Sbjct: 169 VRGVKSGLPLNECLQVIARE---SPEPLAGEFRSVMEQQRLGVPLADALDRMYDRMPLAE 225
Query: 251 VRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPV- 309
VR T + + G ++ ++L L R +++ + KA S K + M++ LP
Sbjct: 226 VRFLTIVIAIQQQAGGNLSEALSNLSGVLRDRQMLALKVKALSAEAKASA-MVLASLPPG 284
Query: 310 --LILVIIGPAILSIIDT 325
++ + P + + T
Sbjct: 285 VMFMVYMSSPGYMMPLFT 302
>gi|317124421|ref|YP_004098533.1| type II secretion system F domain [Intrasporangium calvum DSM
43043]
gi|315588509|gb|ADU47806.1| Type II secretion system F domain [Intrasporangium calvum DSM
43043]
Length = 314
Score = 126 bits (317), Expect = 5e-27, Method: Composition-based stats.
Identities = 52/304 (17%), Positives = 109/304 (35%), Gaps = 8/304 (2%)
Query: 17 AITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRD 76
A+ A+ + +P LE+R+ + + + + + S L
Sbjct: 11 AVGVAMLAGLSLIGAGLPWRRRATLEQRL-APYLRDAPMPSRLLGSGPSTLTIFGLGDLL 69
Query: 77 SKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIF 136
+ LR+ + +LR AG ++ L +++ LG++
Sbjct: 70 APYLRSLGAGFERVLGGGPSVVRRQLR-AGRGAD--LERFRAEQVLWATGGAALGLLGSG 126
Query: 137 GYD-KLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVE 195
+ + V ++ VG +S ++R+ + +P +LL + V
Sbjct: 127 VLAVSKRSFSVPMLVLLTVIGVAVGAVLRDYSLSRAARRREQRMLAEFPTVAELLALAVS 186
Query: 196 SGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNAT 255
+G AL RV L++E+ +A+ N A + +RT + +
Sbjct: 187 AGEGATGALERVC---RLSDGELADELRRCLADARAGANLPTALQGLADRTGLPSLSRFV 243
Query: 256 QALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVII 315
++ + GT + D LR + R + ++ + VP++ LPV +L I
Sbjct: 244 DGIVVAVERGTPLADVLRAQAQDVREDGRRVLMEQGGKREIVMMVPVVFLILPVTVLFAI 303
Query: 316 GPAI 319
P +
Sbjct: 304 YPGL 307
>gi|125973852|ref|YP_001037762.1| type II secretion system protein [Clostridium thermocellum ATCC
27405]
gi|125714077|gb|ABN52569.1| type II secretion system protein [Clostridium thermocellum ATCC
27405]
Length = 289
Score = 126 bits (316), Expect = 5e-27, Method: Composition-based stats.
Identities = 41/186 (22%), Positives = 89/186 (47%), Gaps = 4/186 (2%)
Query: 142 LEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISID 201
+ V + + V + +S V +R+ SI+ +PD L+ +++ V +G+++
Sbjct: 107 VTQDVATLVFGIAVTAAVPYFM-DRELSGKVNRRRLSIQLDFPDFLNKVILLVNAGMTVS 165
Query: 202 QALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQS 261
+A + D + L +E+ +A++ + AFE+F NR ++ + AL+Q+
Sbjct: 166 RAWEKSVTDSE-KDTVLYQELRTVLADIRGGKSETSAFEDFANRCRIPEITKFVSALLQN 224
Query: 262 DRYGTS-IGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAIL 320
G + + LR+ +E R A++ K+ PM++ +IL++ PA+L
Sbjct: 225 LNKGNAEMVSILRLQAAECWEMRKHAAKRLGEEASTKMLFPMML-MFIAVILIVATPAVL 283
Query: 321 SIIDTM 326
++ +M
Sbjct: 284 TLTGSM 289
>gi|256004306|ref|ZP_05429288.1| type II secretion system protein [Clostridium thermocellum DSM
2360]
gi|281418014|ref|ZP_06249034.1| Type II secretion system F domain protein [Clostridium thermocellum
JW20]
gi|255991740|gb|EEU01840.1| type II secretion system protein [Clostridium thermocellum DSM
2360]
gi|281409416|gb|EFB39674.1| Type II secretion system F domain protein [Clostridium thermocellum
JW20]
gi|316939950|gb|ADU73984.1| Type II secretion system F domain [Clostridium thermocellum DSM
1313]
Length = 289
Score = 125 bits (315), Expect = 7e-27, Method: Composition-based stats.
Identities = 41/186 (22%), Positives = 89/186 (47%), Gaps = 4/186 (2%)
Query: 142 LEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISID 201
+ V + + V + +S V +R+ SI+ +PD L+ +++ V +G+++
Sbjct: 107 VTQDVATLVFGIAVTAAVPYFM-DRELSGKVNRRRLSIQLDFPDFLNKVILLVNAGMTVS 165
Query: 202 QALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQS 261
+A + D + L +E+ +A++ + AFE+F NR ++ + AL+Q+
Sbjct: 166 RAWEKSVTDSE-KDTVLYQELRTVLADIRGGKSETSAFEDFANRCRIPEITKFVSALLQN 224
Query: 262 DRYGTS-IGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAIL 320
G + + LR+ +E R A++ K+ PM++ +IL++ PA+L
Sbjct: 225 LNKGNAEMVSILRLQAAECWEMRKHAAKRLGEEASTKMLFPMML-MFIAVILIVATPAVL 283
Query: 321 SIIDTM 326
++ +M
Sbjct: 284 TLTGSM 289
>gi|94497257|ref|ZP_01303829.1| hypothetical protein SKA58_13683 [Sphingomonas sp. SKA58]
gi|94423362|gb|EAT08391.1| hypothetical protein SKA58_13683 [Sphingomonas sp. SKA58]
Length = 332
Score = 125 bits (315), Expect = 7e-27, Method: Composition-based stats.
Identities = 63/298 (21%), Positives = 121/298 (40%), Gaps = 22/298 (7%)
Query: 18 ITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDS 77
I AV + +++ V + G + R + VA R + L+ +R+R S
Sbjct: 6 ILIAVLLAAMLGMVAMAFAGPSPEKARKRRVATIRGRHGESAEALLE-----ARMRRAIS 60
Query: 78 KSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFG 137
K+ + + +N+ +++ G +++L+ + + I LI ++ + G
Sbjct: 61 NRPTGAEAKMLVSLVPNPDNLTKRIKMTG--KKWTLSQYMTACAI--IFLLITALLALRG 116
Query: 138 YDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESG 197
+ A+++ G P W+ L+ KR S +PDAL+LL + SG
Sbjct: 117 FPFFF---------AMLVGAAAGLGLPHWWVGRLITKRVSQFNAKFPDALELLTRGLRSG 167
Query: 198 ISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQA 257
+ I + L V+ +I G P+ EE L + + A + +R +
Sbjct: 168 LPIAETLGVVSNEIPG---PVGEEFKLITERIKIGRTMEQALQETADRLGTAEFQFFVIT 224
Query: 258 LIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVII 315
L G ++ ++L L + R M+ + +A S K + II LP L+ +I
Sbjct: 225 LSIQRETGGNLAETLSNLATVLRQRSQMKLKIRAMSSESKASA-YIIGVLPFLVFGMI 281
>gi|209886534|ref|YP_002290391.1| type II secretion system protein [Oligotropha carboxidovorans OM5]
gi|209874730|gb|ACI94526.1| type II secretion system protein [Oligotropha carboxidovorans OM5]
Length = 325
Score = 125 bits (315), Expect = 8e-27, Method: Composition-based stats.
Identities = 62/320 (19%), Positives = 129/320 (40%), Gaps = 28/320 (8%)
Query: 9 FDATELAVAITTAVSIFSLIYAVVIPSLGSGE-LEKRMKSVAVEREILRKQQITSLQKDS 67
+ LA+A +AV++ L + + P+L EKR S+A R + I + +
Sbjct: 1 MNLQTLAIAFMSAVTLGGLAWVFLYPALSGERQAEKRRASLA------RPENIARRVERN 54
Query: 68 ASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIF 127
R + +L++ + + + +L AG ++ ++ V+ I
Sbjct: 55 PQRSRREQVEDTLKDVENRAKQAKKVP---LNIRLEQAGV--NWTKRQFMIGSAVLGIAT 109
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
+L I + + + G GF P ++ L ++R+ A PDA+
Sbjct: 110 FLLFYIVDANF-----------LATIAFAGAAGFGLPRWVLNFLKKRREKKFLDALPDAV 158
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQ 247
D+++ V++G+ + +L+ V D PL E I S A Y R
Sbjct: 159 DVIVRGVKAGLPLFDSLKVVVND---SPEPLRSEFRAIIETQSIGMPLGEACMRLYERMP 215
Query: 248 MDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFL 307
+ + + G ++ ++L L R + M+A+ +A S+ K + +I
Sbjct: 216 LPEANFFGIVVGIQMKSGGNLSEALGNLSKVLRDRKKMKAKIQAMSMEAKASAGIIGSLP 275
Query: 308 PVLILVI--IGPAILSIIDT 325
P +++++ + P +S++ T
Sbjct: 276 PAVMMIVYFMSPDYISLLWT 295
>gi|254426916|ref|ZP_05040623.1| Bacterial type II secretion system protein F domain [Alcanivorax
sp. DG881]
gi|196193085|gb|EDX88044.1| Bacterial type II secretion system protein F domain [Alcanivorax
sp. DG881]
Length = 291
Score = 125 bits (315), Expect = 8e-27, Method: Composition-based stats.
Identities = 49/279 (17%), Positives = 104/279 (37%), Gaps = 15/279 (5%)
Query: 50 VEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVD--ENIVNKLRAAGF 107
+R + L + L L ++ E+I L+ G
Sbjct: 24 AREWEMRARVHARLHDTAGVRVENDSGGFWLWRISGALTESSLAASDYEDIRLALKGMGK 83
Query: 108 RSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVW 167
E S I L+ ++P++ +G ++ +L+ GF P
Sbjct: 84 TREQSQVIYLLSCWLLPVLVAAIGFLFFGALGG-------------LLMSAAGFILPRRT 130
Query: 168 ISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIA 227
I + + + + + + +E+G+S+++ LR + L +
Sbjct: 131 IRGMGAQAEMRQNLEAVELCHMTRMLMEAGLSLERVLRIIGVQGRPLLPILIARIDRFNR 190
Query: 228 ELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEA 287
+ R A + ++ +R+ + QS + G + SL ++ E ++
Sbjct: 191 LMKSGAERTQALDELGENKRIPVLRSYVVLMKQSSQLGAGVSHSLDQIIDEAQNVERNRI 250
Query: 288 EKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
++ +G K+TV M+ F LP L ++I GPA++SI + +
Sbjct: 251 REETNRIGAKMTVIMMAFMLPALFILIGGPAVVSIAEAL 289
>gi|227875850|ref|ZP_03993976.1| conserved hypothetical protein [Mobiluncus mulieris ATCC 35243]
gi|269977485|ref|ZP_06184457.1| type II secretion system protein [Mobiluncus mulieris 28-1]
gi|306819131|ref|ZP_07452845.1| conserved hypothetical protein [Mobiluncus mulieris ATCC 35239]
gi|307700029|ref|ZP_07637078.1| type II secretion system F domain protein [Mobiluncus mulieris
FB024-16]
gi|227843598|gb|EEJ53781.1| conserved hypothetical protein [Mobiluncus mulieris ATCC 35243]
gi|269934401|gb|EEZ90963.1| type II secretion system protein [Mobiluncus mulieris 28-1]
gi|304648107|gb|EFM45418.1| conserved hypothetical protein [Mobiluncus mulieris ATCC 35239]
gi|307614790|gb|EFN94010.1| type II secretion system F domain protein [Mobiluncus mulieris
FB024-16]
Length = 297
Score = 125 bits (315), Expect = 8e-27, Method: Composition-based stats.
Identities = 46/241 (19%), Positives = 107/241 (44%), Gaps = 5/241 (2%)
Query: 82 NFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKL 141
L + DE++ ++ AG S+ +L+ + + + I I ++
Sbjct: 56 RLASLRELGLVSSDESVRRRIVLAG--SKTTLSEIRRRQKLGAIWMGIAALLLTILGAAA 113
Query: 142 LEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISID 201
+ A+++ +G P +S ++RQ + + PDA++LL + V +G S+
Sbjct: 114 HTLNPLAAIFAILVFPLMGVVYPDYRLSAGAKQRQMQLNQELPDAIELLALAVGAGESLY 173
Query: 202 QALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQS 261
AL RVA + EE+ +AEL ++ ++ RT+ + + + A++ +
Sbjct: 174 MALERVASRCTQVT---GEELTRLMAELKQGEALSMSLTSWRTRTESEVLSHLVDAVVSA 230
Query: 262 DRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILS 321
G+ + LR V+++RS + + + +P++ LP+ ++ + P +++
Sbjct: 231 LERGSPLAQVLREQVADSRSAARNQLLAQGGKKEVWMMIPVVFLILPLTVVFALYPGLVA 290
Query: 322 I 322
+
Sbjct: 291 L 291
>gi|297568749|ref|YP_003690093.1| Type II secretion system F domain protein [Desulfurivibrio
alkaliphilus AHT2]
gi|296924664|gb|ADH85474.1| Type II secretion system F domain protein [Desulfurivibrio
alkaliphilus AHT2]
Length = 305
Score = 123 bits (310), Expect = 3e-26, Method: Composition-based stats.
Identities = 64/301 (21%), Positives = 128/301 (42%), Gaps = 3/301 (0%)
Query: 26 SLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVK 85
+LI+A+V L M +A ++ + ++ LR S +
Sbjct: 4 ALIWALVAALLTISCGLGVMLWLAAKQRRRMRARLQRTLHRPGDGALRRPGSPGWLAQLS 63
Query: 86 KLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYP 145
L + LR AG+R ++ +RL++ ++L ++ ++
Sbjct: 64 ALWPQRPEAAAATERLLRQAGWRRQFDYATFAGLRLLLVPAMMLLLLLLLWVVGG---RA 120
Query: 146 FQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALR 205
+L + +G +G+ P + + RQ+ I+R P LL + +E+G+ +DQAL
Sbjct: 121 LELSWILLPTVGALGWLLPLWGLRMRARARQARIRREVPMLAQLLRVLIEAGLGLDQALL 180
Query: 206 RVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYG 265
VA D S+E+ + + ++ R + +++ + L Q RYG
Sbjct: 181 TVATDNREIIPACSQELSVVMRQVEQGAERGTTLLAMARTLDVQELQDLCEMLRQVYRYG 240
Query: 266 TSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDT 325
++ D LR V+ R ++ +++ L +T+ +IIFF P L+ V+ GP ++I
Sbjct: 241 GNVRDPLREFVALLYDRRRIKLQERVGKLAGSMTIIVIIFFFPALLAVVAGPGFIAIWRM 300
Query: 326 M 326
+
Sbjct: 301 L 301
>gi|289641000|ref|ZP_06473169.1| type II secretion system protein [Frankia symbiont of Datisca
glomerata]
gi|289509120|gb|EFD30050.1| type II secretion system protein [Frankia symbiont of Datisca
glomerata]
Length = 315
Score = 123 bits (310), Expect = 3e-26, Method: Composition-based stats.
Identities = 57/296 (19%), Positives = 109/296 (36%), Gaps = 16/296 (5%)
Query: 33 IPSLGSGELEKRMK-----SVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKL 87
P + L RM + A R + + + T + LR + + L
Sbjct: 25 SPVVRRIRLADRMDPYLRDAPAQSRLLADRPRTTMSSRSGLEELLRPFVRDAAGRLDRFL 84
Query: 88 NLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYD-KLLEYPF 146
+A L + +L AG S+ V +++ ++G + + P
Sbjct: 85 GGRAAL-----LRRLTQAG--GRTSVEEFRVQQVICSAAGALVGAFLLLVRALTGVGPPS 137
Query: 147 QLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRR 206
+ V V+ G A W++ +++R+ I +P +LL + V +G S AL R
Sbjct: 138 IVGVAMVVAGVAGGIVARDWWLTRAIREREERILIEFPTVAELLALAVTAGESPVGALER 197
Query: 207 VAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGT 266
V+ L E+ L +A+ A E RT + + + + GT
Sbjct: 198 VS---RLSHGELGRELRLALADARAGATLVQALEGMATRTTVPSLARFVDGMAVAIERGT 254
Query: 267 SIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
+ + LR + R + + + VP++ F LP ++ PA++S+
Sbjct: 255 PLAEVLRAQAVDVREAGKRQLLEAGGRKEIAMMVPVVFFVLPTTVIFAFYPALVSL 310
>gi|238790284|ref|ZP_04634058.1| Flp pilus assembly protein TadC [Yersinia frederiksenii ATCC 33641]
gi|238721634|gb|EEQ13300.1| Flp pilus assembly protein TadC [Yersinia frederiksenii ATCC 33641]
Length = 282
Score = 123 bits (310), Expect = 3e-26, Method: Composition-based stats.
Identities = 45/200 (22%), Positives = 96/200 (48%), Gaps = 1/200 (0%)
Query: 125 IIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWP 184
++ ++ + L+ + + + ++I P + +V R I+R P
Sbjct: 82 FSLFLISMVMMADELLKLDLSSKDLMISCLIIIIAVIIIPGIVRKYIVNARIEKIERDMP 141
Query: 185 DALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYN 244
+DLL ICV+SG++I+ +L+ +AE++G + + + ++ + +
Sbjct: 142 LFVDLLAICVQSGLTIESSLKFLAENVGDINDNFVPFLDRLVKKIEV-NGLEAGLTHLQK 200
Query: 245 RTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMII 304
V L QS RYG+SI + L L SE R +L++ E+ L K+++P+++
Sbjct: 201 ELPSREVSMLCVTLQQSLRYGSSIYEYLMELSSEMRELQLLKTEEIIGKLSAKMSIPLVL 260
Query: 305 FFLPVLILVIIGPAILSIID 324
FF+ ++++I P I+ ++
Sbjct: 261 FFMFPVVIIIAAPGIMRVMS 280
>gi|257069182|ref|YP_003155437.1| Flp pilus assembly protein TadB [Brachybacterium faecium DSM 4810]
gi|256560000|gb|ACU85847.1| Flp pilus assembly protein TadB [Brachybacterium faecium DSM 4810]
Length = 314
Score = 123 bits (310), Expect = 3e-26, Method: Composition-based stats.
Identities = 62/306 (20%), Positives = 124/306 (40%), Gaps = 10/306 (3%)
Query: 19 TTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVERE--ILRKQQITSLQKDSASSRLRTRD 76
+ ++ L++ + + R + + + + R + ++ ++SRLR
Sbjct: 7 LLSGAVLGLLFGAGVALVAGQLPWLRSRDLDARIDPYLRRSRSMSLFAAPRSTSRLRMVL 66
Query: 77 SKSLRNFVKKLN---LKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGII 133
L ++ + ++ + +LR AG RS S + V ++V I L+LG++
Sbjct: 67 ENLLGPVAVRVLGVLERLTGGNDQLERRLRLAGRRS--STDSFRVEQVVFGAIGLVLGVV 124
Query: 134 WIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLIC 193
L L + V G + +++R + + R +P DLL +
Sbjct: 125 LAVMAIALRGSSPLLGLVIVGFGALTGVLLRDYLLGVEIKRRATRMAREFPTVADLLALA 184
Query: 194 VESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRN 253
V +G S A+ RVA L +E T+A++ + A + RT +D +
Sbjct: 185 VAAGESPIAAMERVA---RTSHGALPDEFAATVADIRAGTSVSQALASLGTRTPLDSLGR 241
Query: 254 ATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILV 313
+ + + GT + + LR + R E E + A + VP++ F LP++I+
Sbjct: 242 FGEGVSIAIERGTPLAEVLRAQAQDAREESKRELMETAGQREILMLVPVVFFVLPLVIVF 301
Query: 314 IIGPAI 319
I P +
Sbjct: 302 AIFPGL 307
>gi|56460009|ref|YP_155290.1| Flp pilus assembly protein TadC [Idiomarina loihiensis L2TR]
gi|56179019|gb|AAV81741.1| Flp pilus assembly protein TadC [Idiomarina loihiensis L2TR]
Length = 237
Score = 123 bits (309), Expect = 3e-26, Method: Composition-based stats.
Identities = 48/206 (23%), Positives = 88/206 (42%), Gaps = 6/206 (2%)
Query: 123 VPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQ----KRQSS 178
+ + FL F + + + + + + + + + + + N + K +
Sbjct: 30 LEVDFLKGAARSFFFWVFMACVSVSISLLSGVWLLSIAYVLLLLMVINKRRQLALKNNKA 89
Query: 179 IKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVA 238
I R PD DL+ + + SGI + AL +V+ L+ E+ ++ L + +
Sbjct: 90 IVRQLPDFCDLISMMIASGIPLISALEKVSASCSDLL--LAREITSMLSRLRRGTSFAQS 147
Query: 239 FENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKL 298
R + + LI+ + GTS+ SLR ++ R + L AEK+A KL
Sbjct: 148 MYELSERYDAKQIHEWSSMLIKGYQQGTSLTKSLRFYANQLRQDLLNSAEKRAQEAPVKL 207
Query: 299 TVPMIIFFLPVLILVIIGPAILSIID 324
P++ F PV LVI+GP I+ I
Sbjct: 208 LFPLVTCFFPVNFLVILGPVIVQISQ 233
>gi|163801322|ref|ZP_02195221.1| hypothetical protein 1103602000598_AND4_10654 [Vibrio sp. AND4]
gi|159174811|gb|EDP59611.1| hypothetical protein AND4_10654 [Vibrio sp. AND4]
Length = 298
Score = 123 bits (309), Expect = 4e-26, Method: Composition-based stats.
Identities = 60/235 (25%), Positives = 105/235 (44%), Gaps = 8/235 (3%)
Query: 90 KAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLR 149
K L + L + G ++ S ++ L+ +I LG+ + DK + F L
Sbjct: 70 KKFLSGNELYTMLSSGGLVNKKSKINFFLIYLIETVI--ALGLFYYLTEDKTKFFMFILG 127
Query: 150 VGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAE 209
+ I F V + K + LDLL +SG++++ AL V+E
Sbjct: 128 FLVINNIAVKMFFK-----KFFVNVERLRTKTNFTYFLDLLATATKSGMTVELALVAVSE 182
Query: 210 DIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIG 269
IG S LS + + ++S +A EN + VR+ T L + G +
Sbjct: 183 YIGNMSSSLSNYIKIYSNDISN-NGFSIAGENLRKSLDLPEVRDFTAVLENALESGAPVT 241
Query: 270 DSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIID 324
D+LRVL E R+ +E E+K + K+ +P+I+F + +I+ II P +L+++
Sbjct: 242 DALRVLSKEIRNFHFIETEEKIGKVNAKMGIPLILFIMFPIIVEIIAPGVLNLLS 296
>gi|299132290|ref|ZP_07025485.1| Type II secretion system F domain protein [Afipia sp. 1NLS2]
gi|298592427|gb|EFI52627.1| Type II secretion system F domain protein [Afipia sp. 1NLS2]
Length = 323
Score = 123 bits (309), Expect = 4e-26, Method: Composition-based stats.
Identities = 56/315 (17%), Positives = 119/315 (37%), Gaps = 28/315 (8%)
Query: 13 ELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRL 72
LA+A +AV++ L + + P L + R + + + + D
Sbjct: 5 TLAIAFMSAVTLGGLAWVFLYPLLSGERQAE------KRRASFSRTEAATRRIDRNQRSR 58
Query: 73 RTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGI 132
R + +L++ + + + +L AG +S ++ + ++ +
Sbjct: 59 REQVEDTLKDVEDRAKQAKKVP---LNTRLAQAGVS--WSRRQFIIGSAALGLLVFFICF 113
Query: 133 IWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLI 192
+ + L G P +S L ++R+ A PDA+D+++
Sbjct: 114 V------------TANLIATAALALSAGLGLPRWVLSYLKRRREKQFLEALPDAVDVIVR 161
Query: 193 CVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVR 252
V++G+ + +L+ V D PL E I S A Y R +
Sbjct: 162 GVKAGLPLFDSLKVVVND---SPEPLRSEFRAIIETQSIGMPLGEACMRLYERMPLPEAN 218
Query: 253 NATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLIL 312
+ + G ++ ++L L R + M A+ +A S+ K + +I PV+++
Sbjct: 219 FFGIVIGIQTKSGGNLSEALGNLSKVLRDRKKMRAKIQAMSMEAKASAAIIGALPPVVMI 278
Query: 313 V--IIGPAILSIIDT 325
+ I+ P +S++ T
Sbjct: 279 IVYIMSPDYISLLWT 293
>gi|294012436|ref|YP_003545896.1| Flp pilus assembly protein TadB [Sphingobium japonicum UT26S]
gi|292675766|dbj|BAI97284.1| Flp pilus assembly protein TadB [Sphingobium japonicum UT26S]
Length = 332
Score = 123 bits (309), Expect = 4e-26, Method: Composition-based stats.
Identities = 59/298 (19%), Positives = 117/298 (39%), Gaps = 21/298 (7%)
Query: 18 ITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDS 77
I + + + +V+ + EK K R L + + + +R+R S
Sbjct: 5 IILMAVLLATMLGLVVMAFSGPSPEKAQK----RRMELIRGRHSDSTDAILEARMRKAIS 60
Query: 78 KSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFG 137
+ + + EN+ ++R G +++++ + V I + ++ + G
Sbjct: 61 NRPAGNEASMLVSLVPNPENLAKRIRMTG--KKWTVSQYMTACAV--IFLALCALLMLRG 116
Query: 138 YDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESG 197
+ L AV+L G P +W+S L++ R +PDAL+LL + SG
Sbjct: 117 FPPLF---------AVMLGLAAGLGLPHMWVSRLIKGRVLKFNAKFPDALELLTRGLRSG 167
Query: 198 ISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQA 257
+ I + L V+ ++ G P+ EE L + A + +R + +
Sbjct: 168 LPIAETLNVVSNEVPG---PVGEEFKLITERIKIGKTMDQALQETADRLGTPEFQFFVIS 224
Query: 258 LIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVII 315
L G ++ ++L L + R M+ + +A S K + II LP + +I
Sbjct: 225 LAIQRETGGNLAETLSNLATVLRQRAQMKLKIRAMSSESKASA-YIIGVLPFTVFGLI 281
>gi|332534353|ref|ZP_08410194.1| type II secretion system protein [Pseudoalteromonas haloplanktis
ANT/505]
gi|332036172|gb|EGI72646.1| type II secretion system protein [Pseudoalteromonas haloplanktis
ANT/505]
Length = 271
Score = 123 bits (308), Expect = 5e-26, Method: Composition-based stats.
Identities = 46/229 (20%), Positives = 101/229 (44%), Gaps = 10/229 (4%)
Query: 99 VNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGY 158
+LR AG + L L ++ + + ++L +L+ +
Sbjct: 47 KRQLRQAGIQINKILISLYCFKVAATFSAFTV----------IELTGYELSESIKLLLCF 96
Query: 159 VGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPL 218
V F AP W +R++ I + L +LL+ + +G S++++ + Q PL
Sbjct: 97 VCFFAPECWFLLRKNQRKTVINNSLEFFLRVLLVYMRAGFSLERSFALAVDHGLSQKHPL 156
Query: 219 SEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSE 278
+E+ L + ELS +R+ AF + + RT + ++ T ++ + GT + ++ +
Sbjct: 157 YKELKLFLFELSAGKDREFAFNSLFERTGVLGIKKLTNLMLIGSKLGTPLIQAVEAQLEG 216
Query: 279 TRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
++ + KK T P+I+ P+ ++++ PA L +++ +K
Sbjct: 217 LALKKNILLAKKVNKKAMHTTFPIILICFPMFLVLVFFPAALQVMNVLK 265
>gi|117928944|ref|YP_873495.1| type II secretion system protein [Acidothermus cellulolyticus 11B]
gi|117649407|gb|ABK53509.1| type II secretion system protein [Acidothermus cellulolyticus 11B]
Length = 311
Score = 123 bits (308), Expect = 6e-26, Method: Composition-based stats.
Identities = 59/309 (19%), Positives = 116/309 (37%), Gaps = 10/309 (3%)
Query: 15 AVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRT 74
AV + V + V P L R+ +R + + + + +
Sbjct: 8 AVGLCAGVGTALAVSGV--PHFRHPRLADRLAPYLRDRSRPSQPPVHTAAR-GTWPVVGQ 64
Query: 75 RDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVP-IIFLILGII 133
+ L + ++++ + + ++ +L AAG ++ V +++ I FL+ +
Sbjct: 65 LLAPVLADIARRVD-RVMGGPGSVRRRLDAAG--RNMAVEEFRVEQVLWGSIGFLVGLGV 121
Query: 134 WIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLIC 193
+ + P ++ G A V +S Q+R + +P +LL +
Sbjct: 122 SLLLLAQNPHRPPLALGMLCVIAACCGAIARDVTLSREAQRRSRRMLAEFPTVAELLALA 181
Query: 194 VESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRN 253
V +G S AL RV G LS E ++E + A EN R +D +
Sbjct: 182 VGAGESPAAALERVVRVCRG---ELSVEFARALSEARTGGSLVTALENLAARNPLDIMSR 238
Query: 254 ATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILV 313
+I + + GT + D LR S+ R + VP++ LP+ +L
Sbjct: 239 FVDGMIVAMQRGTPLADVLRAQASDVREAAKRSLLDIGGRKEIGMMVPVVFLILPITLLF 298
Query: 314 IIGPAILSI 322
+ P+ +S+
Sbjct: 299 ALFPSFVSL 307
>gi|269955831|ref|YP_003325620.1| type II secretion system protein [Xylanimonas cellulosilytica DSM
15894]
gi|269304512|gb|ACZ30062.1| type II secretion system protein [Xylanimonas cellulosilytica DSM
15894]
Length = 312
Score = 122 bits (307), Expect = 6e-26, Method: Composition-based stats.
Identities = 55/286 (19%), Positives = 113/286 (39%), Gaps = 18/286 (6%)
Query: 49 AVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVD------------E 96
A + + +D+ S LR + +S V++L L L D
Sbjct: 29 ARRVTLASRLAPALRPRDATSGLLREQPVRSPFPVVERL-LAPWLADLAHWFERLGSPRA 87
Query: 97 NIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILI 156
+ +L AG S S++ ++V L++G++ + V++
Sbjct: 88 EVRRRLDRAG--STESVDQFRARQVVWTGAGLVVGLVLALLIGAARGFAPVPLAALVLIS 145
Query: 157 GYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSV 216
G GF A ++ + +R+ + +P +LL + V +G + AL RVA G
Sbjct: 146 GACGFAACDQVLTRQISQREERMVAEFPTIAELLALAVTAGEAPISALERVAATARG--- 202
Query: 217 PLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLV 276
LS E+ T+A++ +A + +RT + + + + + GT + + LR
Sbjct: 203 ELSVEIRRTLADVRAGAPIALALTDMADRTGLPSLTRFAEGVAVALERGTPLAEVLRAQA 262
Query: 277 SETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
+ R + + VP++ LP+ ++ I P++ ++
Sbjct: 263 QDVRESGRRALMEAGGRKEVVMLVPVVFLILPITVVFAIYPSLATL 308
>gi|288919650|ref|ZP_06413978.1| type II secretion system protein [Frankia sp. EUN1f]
gi|288348939|gb|EFC83188.1| type II secretion system protein [Frankia sp. EUN1f]
Length = 367
Score = 122 bits (307), Expect = 6e-26, Method: Composition-based stats.
Identities = 46/228 (20%), Positives = 91/228 (39%), Gaps = 6/228 (2%)
Query: 97 NIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILI 156
+ +L AG ++ V +++ ++ +LG + L P L A+++
Sbjct: 141 ALTRRLVQAG--GRTTIEEFRVQQVITAVVGALLGASVLALRTLLGIGPPALVGVALVVA 198
Query: 157 GYVG-FCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQS 215
G G A W++ +++R+ + +P +LL + V +G S AL RV+ G
Sbjct: 199 GTAGGILARDWWLTRAIREREDRMLMEFPTVAELLALAVTAGESAIGALERVSRLTRG-- 256
Query: 216 VPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVL 275
L E+ L +A+ A E RT + + + + GT + D LR
Sbjct: 257 -ELGTELRLALADARAGATLVQALEGIAARTSLPPLTRFVDGMAVAIERGTPLADVLRAQ 315
Query: 276 VSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSII 323
+ R + + + +P++ LP ++ PA++S
Sbjct: 316 AVDVREAGKRQLLEAGGRKEIAMMIPVVFLILPTTVIFAFYPALVSFT 363
>gi|118589707|ref|ZP_01547112.1| hypothetical protein SIAM614_04685 [Stappia aggregata IAM 12614]
gi|118437793|gb|EAV44429.1| hypothetical protein SIAM614_04685 [Stappia aggregata IAM 12614]
Length = 340
Score = 122 bits (306), Expect = 8e-26, Method: Composition-based stats.
Identities = 55/322 (17%), Positives = 126/322 (39%), Gaps = 24/322 (7%)
Query: 6 FDLFDATELAVAITTAVSIFSLIYAVVIPSL-GSGELEKRMKSVAVEREILRKQQITSLQ 64
F + T LAVA+ +++ +IY++ P+L GS ++R+ +VA R Q +
Sbjct: 7 FLTPEITGLAVALLVMLAVGGIIYSLFQPALSGSKRRDQRVNAVAA-----RPQSENQRK 61
Query: 65 KDSASSRLRTRDSKSLRNFVKKLNLKAILVDE-NIVNKLRAAGFRSEYSLNILLVVRLVV 123
R + L+ F ++ K + + K+ AG + + ++ +V
Sbjct: 62 ALRDVDRRKRSIQDQLKEFEERQKAKQDKQQKVPLKVKIEQAGL--TWETHHFVIFSIVA 119
Query: 124 PIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAW 183
++F ++ G +GF P ++++ ++R ++
Sbjct: 120 GVVF--------LILGLIIGGGNLYIAAGFGFAGSLGF--PRWYVASKRKRRFNAFLEEL 169
Query: 184 PDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFY 243
P+ +D+++ V++G+ + ++ VA + P++ E + A
Sbjct: 170 PNGVDIIVRGVKAGLPLSDCIKVVAREARD---PVATEFRKITETQIMGISLADAVGKLP 226
Query: 244 NRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMI 303
R + + + G + ++L L R + M+ + KA S K + +I
Sbjct: 227 ERVPLPEANFFAIVVAIQQKAGGGLAEALNNLSKVLRGRKAMKRKIKALSAEAKSSAGII 286
Query: 304 --IFFLPVLILVIIGPAILSII 323
+ F I+ +I P + ++
Sbjct: 287 GSLPFFVGGIMYLISPKYIMVL 308
>gi|307293453|ref|ZP_07573299.1| Type II secretion system F domain protein [Sphingobium
chlorophenolicum L-1]
gi|306881519|gb|EFN12735.1| Type II secretion system F domain protein [Sphingobium
chlorophenolicum L-1]
Length = 332
Score = 122 bits (306), Expect = 8e-26, Method: Composition-based stats.
Identities = 62/302 (20%), Positives = 124/302 (41%), Gaps = 28/302 (9%)
Query: 14 LAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLR 73
+AV +TT + + ++ +A P ++RM+ + + + + + S+R
Sbjct: 8 MAVLLTTMLGLIAMAFAGPSPDKAR---KRRMELIRGRHSDSADAILEARMRKAISNRPT 64
Query: 74 TRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGII 133
+S L + V EN+ ++R G +++++ + V+ ++ L ++
Sbjct: 65 GAESTMLVSLVP--------NPENLAKRIRMTG--KKWTVSQYMTSCAVIFLVLCALLML 114
Query: 134 WIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLIC 193
F + AV+L G P +W+S L+ KR +PDAL+LL
Sbjct: 115 RGFAP-----------LFAVMLGLAAGLGLPHMWVSRLINKRVQQFTAKFPDALELLTRG 163
Query: 194 VESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRN 253
+ SG+ I + L V+ ++ G P+ EE L + A + +R +
Sbjct: 164 LRSGLPIAETLGVVSSEVPG---PVGEEFKLITERIKIGKTMDQALQETADRLGTAEFQF 220
Query: 254 ATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILV 313
+L G ++ ++L L + R M+ + +A S K + II LP +
Sbjct: 221 FVISLAIQRETGGNLAETLSNLATVLRQRSQMKLKIRAMSSESKASA-YIIGVLPFTVFG 279
Query: 314 II 315
+I
Sbjct: 280 LI 281
>gi|84494453|ref|ZP_00993572.1| hypothetical protein JNB_06644 [Janibacter sp. HTCC2649]
gi|84383946|gb|EAP99826.1| hypothetical protein JNB_06644 [Janibacter sp. HTCC2649]
Length = 310
Score = 122 bits (306), Expect = 8e-26, Method: Composition-based stats.
Identities = 53/313 (16%), Positives = 107/313 (34%), Gaps = 18/313 (5%)
Query: 21 AVSIFSLIYAVVIPSLGSGELEKRMKSVAVE-----REILRKQQI--TSLQKDSASSRLR 73
A+ F +++ G R +A R+ R + + Q A L
Sbjct: 9 AILGFLTGVGLLLAWF--GLPRHRQAGLADRVLPYLRDTPRPSNLLAANAQTRGAIGTLF 66
Query: 74 TRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGII 133
L V+++ + ++ +L AG ++ +++ + + +
Sbjct: 67 APIVGELSGHVERV----MGGTASVRRRLLRAGL--APDVDKFRAQQVIWGVGGGLGMLA 120
Query: 134 WIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLIC 193
L V + G A V++S +R+ + +P +LL +
Sbjct: 121 VGTLSAVTRGSSPVLVVLLTAIGIASGVVAADVFLSRRANQREERMLAEFPTVAELLALA 180
Query: 194 VESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRN 253
V +G AL RV LS+E+ + + + VA +RT + +
Sbjct: 181 VGAGEGAVGALERVC---RLSRGELSDELRRCLGDARAGASLPVALHGLADRTGLMSLTR 237
Query: 254 ATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILV 313
++ + GT + D LR + R E + + +P++ LP+ +L
Sbjct: 238 FVDGIVIAVERGTPLADVLRAQAQDVREEGRRAIMEAGGKKEIAMMIPVVFLVLPITVLF 297
Query: 314 IIGPAILSIIDTM 326
I P + TM
Sbjct: 298 AIFPGFSFLNFTM 310
>gi|77456872|ref|YP_346377.1| type II secretion system protein [Pseudomonas fluorescens Pf0-1]
gi|77380875|gb|ABA72388.1| putative type II secretion system protein [Pseudomonas fluorescens
Pf0-1]
Length = 296
Score = 121 bits (304), Expect = 1e-25, Method: Composition-based stats.
Identities = 46/244 (18%), Positives = 98/244 (40%), Gaps = 4/244 (1%)
Query: 85 KKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEY 144
L +A+ +D L G+RS ++ ++ P++ L + +L
Sbjct: 57 SALGQRAVKLDNETQTLLNRLGWRSARQRSLFAACQIGTPLLLLSV----AVLLQGVLFP 112
Query: 145 PFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQAL 204
+ + A + +G+ P ++ +RQ + + LL I E+G++++QAL
Sbjct: 113 HIERQWIAPLFALGIGYLLPKRLLAMAAGRRQKQLATEISTFIPLLRILFEAGMAVEQAL 172
Query: 205 RRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRY 264
R ++ + L++E+ L +A + +D + L Q +
Sbjct: 173 RVLSHEGQTLLPVLTQELRLVLARVDSGLELGEELNKATRLLAVDEFTDTCVILQQLLQQ 232
Query: 265 GTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIID 324
G SL L RL ++ + + K++V M++F P L++V+ GP ++
Sbjct: 233 GGGAMKSLLALKQLLDDRRLTRLQEYISKMSAKMSVVMMMFLFPALLIVLAGPGFSALAR 292
Query: 325 TMKD 328
+
Sbjct: 293 ALGS 296
>gi|119961380|ref|YP_948378.1| type II secretion system protein subunit F [Arthrobacter aurescens
TC1]
gi|119948239|gb|ABM07150.1| putative type II secretion system protein F domain [Arthrobacter
aurescens TC1]
Length = 313
Score = 121 bits (304), Expect = 1e-25, Method: Composition-based stats.
Identities = 51/275 (18%), Positives = 108/275 (39%), Gaps = 10/275 (3%)
Query: 37 GSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDE 96
+ +E ++KS +E +LR LR +L + + + N + +
Sbjct: 34 FADRIEPQLKSQNLESRLLRTPTHNLTPFGPFERILRPIIRDALTS-MSRFN----VGNT 88
Query: 97 NIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILI 156
+ KL AG S+ S +L+ +L I+ + + + +VI
Sbjct: 89 ALAKKLARAG--SKKSTLDFRAEQLLWAGAAFVLSIVVVVAGASAGRFSPAVSCSSVIAS 146
Query: 157 GYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSV 216
G+ + +++R+S + +P +L+ + V +G S A+ RV+ +
Sbjct: 147 ALGGYLLRDYALGLRIKRRESRMLSEFPSLAELMALAVAAGESAMGAMDRVS---RSSNG 203
Query: 217 PLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLV 276
LS E +A+ A + F +R+++ + L+ + GT + D LR
Sbjct: 204 ELSAEFATILADTRSGKPLTEALQAFSSRSELPPLVRFIDGLMVAVERGTPLADVLRAQA 263
Query: 277 SETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLI 311
++ R + + A + VP++ LP+ +
Sbjct: 264 ADVRDAAKRDLMESAGRKEIAMMVPLVFGVLPLTV 298
>gi|238755456|ref|ZP_04616796.1| hypothetical protein yruck0001_3330 [Yersinia ruckeri ATCC 29473]
gi|238706297|gb|EEP98674.1| hypothetical protein yruck0001_3330 [Yersinia ruckeri ATCC 29473]
Length = 268
Score = 121 bits (304), Expect = 1e-25, Method: Composition-based stats.
Identities = 43/203 (21%), Positives = 99/203 (48%), Gaps = 1/203 (0%)
Query: 121 LVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIK 180
+++ FLIL I + ++ + + +I I P++ + L++K++ +
Sbjct: 62 MLITACFLILSIWVLSISFISIDIYEKYTLHILIFIATASIIIPNLIKNMLLRKKKKLLT 121
Query: 181 RAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFE 240
A P +D++ C+++G++I+ AL A++ + LS + + S + + + +
Sbjct: 122 EAIPLFIDMVAACIQAGMTIESALTHTAKNFESINRDLSMLFNKIMKK-SEIIGLEKSIK 180
Query: 241 NFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV 300
++ L S +G+++ + L L +E + +L+ AE+ + L KLT+
Sbjct: 181 EVSIVAPSTEIKMFCSTLQYSLSFGSTVYEQLNTLSAEIKKMQLLIAEEILSKLSTKLTL 240
Query: 301 PMIIFFLPVLILVIIGPAILSII 323
P+ +F + I++I+ P+IL I
Sbjct: 241 PLFLFMVIPFIVLILSPSILGFI 263
>gi|115525753|ref|YP_782664.1| type II secretion system protein [Rhodopseudomonas palustris
BisA53]
gi|115519700|gb|ABJ07684.1| type II secretion system protein [Rhodopseudomonas palustris
BisA53]
Length = 324
Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats.
Identities = 58/320 (18%), Positives = 123/320 (38%), Gaps = 29/320 (9%)
Query: 9 FDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSA 68
LA+A V++ + + + P L K R L + + + Q D
Sbjct: 1 MQMQTLAIAFMATVAVGGVAWVFLYPLLSGE------KKAEQRRASLARPEPVARQVDKG 54
Query: 69 SSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFL 128
R + +L+ + + + I +L AG +++ + V+
Sbjct: 55 QRSRREQVELTLKEVDARRQKEKKVA---ISTRLTQAGL--DWAPKNFYIGSAVLG---- 105
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
+ + + P AV L GF P +S L ++R+ + +A PDA+D
Sbjct: 106 -AAVFALVYLSRGGITP------AVGLGFAAGFGLPRWLLSFLKKRRERNFLKALPDAVD 158
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
+++ +++G+ + +++ VA D PL E L + + A Y R +
Sbjct: 159 VIVRGIKAGLPLYDSIKVVAAD---APEPLRTEFLTILDTQAIGMPLGEACGRLYERMPL 215
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP 308
+ + G ++ ++L L R + M + +A S+ K + II LP
Sbjct: 216 PEANFFGIVIAIQQKSGGNLSEALGNLSKVLRDRKRMAEKIQAMSMEAKASAG-IIGSLP 274
Query: 309 VLILVIIG---PAILSIIDT 325
+++ ++ P ++++ T
Sbjct: 275 PIVMFLVYLTTPDYIALLWT 294
>gi|163757631|ref|ZP_02164720.1| hypothetical protein HPDFL43_19512 [Hoeflea phototrophica DFL-43]
gi|162285133|gb|EDQ35415.1| hypothetical protein HPDFL43_19512 [Hoeflea phototrophica DFL-43]
Length = 336
Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats.
Identities = 59/320 (18%), Positives = 130/320 (40%), Gaps = 20/320 (6%)
Query: 9 FDATELAVAITTAVSIFSLIYAVVIPSLGSGE-LEKRMKSVAVEREILRKQQITSLQKDS 67
D +A+ A+S +L Y V+ + E R+K V E R + + + +
Sbjct: 4 LDTVVVAIIGLAALSAGALGYGVLYSRIEGDRKAENRVKRVKAA-ETDRSKASAARDRLA 62
Query: 68 ASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIF 127
+++ R SL+ +K + +K+ AG +SL ++ LV+ ++
Sbjct: 63 EANKRRKSVQDSLKTLDEKNKENDKKTSPPLKDKIGQAGL--PFSLGQFYMISLVLGLVA 120
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
++G + + A + G P + L +R + +P+AL
Sbjct: 121 GLVGFVAY-----------GSPLVAAGIAIIFGAGVPRWIVGYLRNRRLKAFLSEFPNAL 169
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQ 247
D+++ ++SG+ ++ A+R ++ + P+ E + N A Y+R
Sbjct: 170 DIMVRSIKSGLPLNDAIRMISAEGQE---PVRTEFKRIVDSQQMGMNIPEACARLYSRIP 226
Query: 248 MDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMI--IF 305
+ + + + G ++ ++L L R + M+A+ A S+ K + +I +
Sbjct: 227 LSEANFFSIVIAIQAQAGGNLSEALGNLSRVLRDRKKMKAKINALSMEAKASAAIIGALP 286
Query: 306 FLPVLILVIIGPAILSIIDT 325
F+ L++ + P + I+ T
Sbjct: 287 FIVALLVYLTSPDYIMILFT 306
>gi|320095978|ref|ZP_08027592.1| hypothetical protein HMPREF9005_2204 [Actinomyces sp. oral taxon
178 str. F0338]
gi|319977085|gb|EFW08814.1| hypothetical protein HMPREF9005_2204 [Actinomyces sp. oral taxon
178 str. F0338]
Length = 178
Score = 120 bits (302), Expect = 2e-25, Method: Composition-based stats.
Identities = 37/173 (21%), Positives = 68/173 (39%), Gaps = 3/173 (1%)
Query: 150 VGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAE 209
V +L VG A ++ RQ ++ A PDA +LL + V +G S+ AL RVA
Sbjct: 5 VVVALLGCVVGMSAWDRLLTARADSRQRRVEAAVPDASELLALAVGAGESVPAALDRVAS 64
Query: 210 DIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIG 269
L +E+ +A++ A + R + Q L + G+ +
Sbjct: 65 ---LSHSDLGDELARAVADIRLGAPSVRALTDLAARNDSPALSRLCQTLSTAIGRGSPLA 121
Query: 270 DSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
L + R ++ + P++ LPV +L + P ++++
Sbjct: 122 AVLHDQARDIREASRQRLMEEGGKREIAMLFPVVFLILPVTVLFALYPGLMAL 174
>gi|86748903|ref|YP_485399.1| type II secretion system protein [Rhodopseudomonas palustris HaA2]
gi|86571931|gb|ABD06488.1| type II secretion system protein [Rhodopseudomonas palustris HaA2]
Length = 324
Score = 120 bits (302), Expect = 2e-25, Method: Composition-based stats.
Identities = 66/317 (20%), Positives = 130/317 (41%), Gaps = 31/317 (9%)
Query: 13 ELAVAITTAVSIFSLIYAVVIPSL-GSGELEKRMKSVAVEREILRKQQITSLQKDSASSR 71
LA+ AVS+ L + + P L G + E+R SVA +R+ + + +
Sbjct: 5 SLALGFLAAVSVGGLAWVFIYPLLSGEKQAEQRRTSVARTTPAVRQIEKSQRSR------ 58
Query: 72 LRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILG 131
R + SLR + + + ++ KL AG +++ N + V + +
Sbjct: 59 -REQVEGSLREIEARSQKQKNV---SLGTKLTQAGL--DWTPNKFIGVSAGLGTVAFATT 112
Query: 132 IIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLL 191
+I G + AV L GF P + L ++R+ A PDA+D+++
Sbjct: 113 MILGGGL-----------LAAVGLAFAAGFGLPRWVLGFLKKRREKKFINALPDAVDVIV 161
Query: 192 ICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCV 251
+++G+ + +L+ VA D PL E I + A Y+R +
Sbjct: 162 RGIKAGLPLFDSLKVVAAD---SPEPLKSEFNAIIETQAIGMPLGEACARLYDRMPLPEA 218
Query: 252 RNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLI 311
+ + G ++ ++L L R + M + +A S+ K + II LP ++
Sbjct: 219 NFFGIVISIQQKSGGNLSEALGNLSKVLRDRKKMAEKIQAMSMEAKASAA-IIGSLPPIV 277
Query: 312 LVIIG---PAILSIIDT 325
++++ P ++++ T
Sbjct: 278 MLLVYLSTPDYIALLWT 294
>gi|110626527|gb|ABG79011.1| TadC [Yersinia ruckeri]
Length = 277
Score = 120 bits (302), Expect = 3e-25, Method: Composition-based stats.
Identities = 43/203 (21%), Positives = 99/203 (48%), Gaps = 1/203 (0%)
Query: 121 LVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIK 180
+++ FLIL I + ++ + + +I I P++ + L++K++ +
Sbjct: 71 MLITACFLILSIWVLSISFISIDIYEKYTLHILIFIATASIIIPNLIKNMLLRKKKKLLT 130
Query: 181 RAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFE 240
A P +D++ C+++G++I+ AL A++ + LS + + S + + + +
Sbjct: 131 EAIPLFIDMVAACIQAGMTIESALTHTAKNFESINRDLSMLFNKIMKK-SEIIGLEKSIK 189
Query: 241 NFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV 300
++ L S +G+++ + L L +E + +L+ AE+ + L KLT+
Sbjct: 190 EVSIVAPSTEIKMFCSTLQYSLSFGSTVYEQLNTLSAEIKKMQLLIAEEILSKLSTKLTL 249
Query: 301 PMIIFFLPVLILVIIGPAILSII 323
P+ +F + I++I+ P+IL I
Sbjct: 250 PLFLFMVIPFIVLILSPSILGFI 272
>gi|90419768|ref|ZP_01227677.1| putative Flp pilus assembly protein TadB, type II/IV secretion
system [Aurantimonas manganoxydans SI85-9A1]
gi|90335809|gb|EAS49557.1| putative Flp pilus assembly protein TadB, type II/IV secretion
system [Aurantimonas manganoxydans SI85-9A1]
Length = 335
Score = 119 bits (299), Expect = 5e-25, Method: Composition-based stats.
Identities = 66/319 (20%), Positives = 132/319 (41%), Gaps = 30/319 (9%)
Query: 20 TAVSIFSLIYAVVIPSLGSGELEKRM---KSVAVEREILRKQQITSLQKDSASSRLRTRD 76
+ +F L + +L L+ R+ + V R + A RL+ +D
Sbjct: 4 AGIILFILFSTIAAGALAFAFLQPRIAKERKVENRRAQYTRDDTERRSLKVARDRLKEQD 63
Query: 77 S--KSLRNFVKKLNLKAILVDE-----NIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLI 129
K++++ +K+L + D+ + +L AG+ S+ +++ +V+ ++ L
Sbjct: 64 KRRKTIQSSLKELESRQKERDKHTGKLTLQRQLEQAGW--TMSVKQFVLLSIVMGVVSLF 121
Query: 130 LGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDL 189
+ I+ P L +GAV++ G P +S +KR +P+A+DL
Sbjct: 122 VAAIF--------GAPLLLLIGAVVVG---GLGLPRFLLSRARKKRFHKFGEEFPNAIDL 170
Query: 190 LLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMD 249
++ V+SG+ ++ LR V+ + P+ E I A E Y
Sbjct: 171 IVRGVKSGLPLNDTLRIVSGE---TLDPVRSEFRKIIESQQMGVPISEAVEKLYRNIPTP 227
Query: 250 CVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPV 309
+ + G ++ ++L L + R + M A+ +A S+ K + II LPV
Sbjct: 228 EANFFAIVIAIQSQAGGNLSEALGNLSNVLRDRKKMRAKVQAMSMEAKASGG-IIGALPV 286
Query: 310 L---ILVIIGPAILSIIDT 325
+ ++ I P +S++ T
Sbjct: 287 VVAGLVYITTPDYISVLFT 305
>gi|218663023|ref|ZP_03518953.1| putative tadC pilus assembly protein [Rhizobium etli IE4771]
Length = 145
Score = 119 bits (299), Expect = 5e-25, Method: Composition-based stats.
Identities = 37/138 (26%), Positives = 74/138 (53%)
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
+L++C+++G+SI+ A RVA + + + + + E+ + A N R ++
Sbjct: 1 MLIVCLDAGMSIEAAANRVAREFVDKQQDFGLHLSIMMLEVRGGRRLREALANLATRLRI 60
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP 308
D R QS+ GTS+ +LRV E R R++ AE+KA +L K+ +P+ F P
Sbjct: 61 DEARALAVLFRQSEELGTSVTQTLRVYSKEMRDLRIVRAEEKANALPVKMLLPLGAFLFP 120
Query: 309 VLILVIIGPAILSIIDTM 326
V +++++ P ++ ++ +
Sbjct: 121 VSLIIVLVPIVIRVVSLL 138
>gi|332671124|ref|YP_004454132.1| Type II secretion system F domain-containing protein [Cellulomonas
fimi ATCC 484]
gi|332340162|gb|AEE46745.1| Type II secretion system F domain protein [Cellulomonas fimi ATCC
484]
Length = 310
Score = 119 bits (298), Expect = 6e-25, Method: Composition-based stats.
Identities = 54/311 (17%), Positives = 112/311 (36%), Gaps = 7/311 (2%)
Query: 12 TELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSR 71
E A A+ ++ ++ V L++R+ R + +
Sbjct: 3 PETAGALAGLLASLGVLVVVSRLRARRIRLDQRLAPYL--RPQRSSSALLRSPTTTGPLA 60
Query: 72 LRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILG 131
R + + L + ++ +L AG + ++ ++V ++ L G
Sbjct: 61 TVERLAAPVLRDAVHLVSRLGSPSADLRRRLTRAG--RDETVEQFRAGQVVWGVLGLAAG 118
Query: 132 IIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLL 191
+ P + V V+L G A + V +R+S + + P +LL
Sbjct: 119 LTLALLLAATRGTPPVVLVVLVVLCAVTGVLARDWALGRQVAQRESRMLQEMPTVAELLA 178
Query: 192 ICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCV 251
+ V +G AL RV G L+ E+ T+A+ A + +RT + +
Sbjct: 179 LAVGAGEGATGALERVVRSTRG---ELTAELERTLADARAGAPLTAALDGLADRTGLAAL 235
Query: 252 RNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLI 311
+ + + GT + + LR + R E + + + VP++ LPV +
Sbjct: 236 ARFAEGVAVAVERGTPLAEVLRAQAQDVREEVRRDLMETGGRKEVAMMVPVVFLILPVTV 295
Query: 312 LVIIGPAILSI 322
+ P++L +
Sbjct: 296 AFAVFPSLLVL 306
>gi|114798049|ref|YP_761687.1| secretion system protein [Hyphomonas neptunium ATCC 15444]
gi|114738223|gb|ABI76348.1| secretion system protein [Hyphomonas neptunium ATCC 15444]
Length = 339
Score = 119 bits (298), Expect = 7e-25, Method: Composition-based stats.
Identities = 66/319 (20%), Positives = 136/319 (42%), Gaps = 22/319 (6%)
Query: 15 AVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRT 74
VA ++I L +V+ KR ++++ R K + R
Sbjct: 5 IVAALAFLAIAGL--GLVLTGGNDDAARKRARAISAGRG----GAPVKGGKVVDENIRRR 58
Query: 75 RDSKSLRNFVKKLNLKAILVD--ENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGI 132
++ + +++ + + D NI +KL AG E + + ++ V +I GI
Sbjct: 59 AKTQEMLEGLRRQDKERRRNDPMRNIGSKLTQAGL--EIPVPMFWLLSAVCGLI--CAGI 114
Query: 133 IWIFGYDKLLEYPFQLRVGAVILIGYV---GFCAPSVWISNLVQKRQSSIKRAWPDALDL 189
++I G D L+ L+ V++ P ++ L++ R + + + DALD+
Sbjct: 115 VYISGADGLVINGISLKSRPVLIAAAFFGGTLGIPQFILNFLIKGRHTKMINQFADALDI 174
Query: 190 LLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMD 249
++ V SG+ +++ +R +A++ PL +E L L+ + + Y R +
Sbjct: 175 IVRGVRSGLPLNECIRVIAKE---SPEPLRKEFLTFADNLAMGAGLERSLAALYKRLPLQ 231
Query: 250 CVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPV 309
+ LI + G ++ ++L L + RS ++M + KA S K + MII LP+
Sbjct: 232 EINFFAIVLIIQSKAGGNLSEALHNLSTVIRSRKMMREKVKALSSEAKASA-MIIGSLPI 290
Query: 310 ---LILVIIGPAILSIIDT 325
+++ + P + + T
Sbjct: 291 AVGVMVFLTTPDYIMTLFT 309
>gi|184200572|ref|YP_001854779.1| hypothetical protein KRH_09260 [Kocuria rhizophila DC2201]
gi|183580802|dbj|BAG29273.1| hypothetical membrane protein [Kocuria rhizophila DC2201]
Length = 314
Score = 118 bits (297), Expect = 9e-25, Method: Composition-based stats.
Identities = 44/256 (17%), Positives = 95/256 (37%), Gaps = 6/256 (2%)
Query: 64 QKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVV 123
++ S S ++ +++ E + +L G R + + +++
Sbjct: 58 RRARGRSLTGAAGSAAMSWILQRAAP-LFSNTEVLARRLVRDGSRKD--VMDYRAEQVLC 114
Query: 124 PIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAW 183
+ +LG + E + V+L G + +S +++R+ + +
Sbjct: 115 AVAGGVLGGVGGIALVLRAEVSVAIVAVGVVLGAGCGVWLRNNLLSRSIRRREKLMVAEF 174
Query: 184 PDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFY 243
P +L+ + V +G S AL RV G LS E +A+ A ++F
Sbjct: 175 PAIAELMALAVGAGESTVGALERVCRVAEG---ELSGEFRAVLAQTRAGSGLTTALQDFS 231
Query: 244 NRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMI 303
RT + + ++ + GT + + LR + R + A + VP++
Sbjct: 232 ARTDVVALGRFVDGIVVAIERGTPLAEVLRAQAQDVRDHDKRVLMEVAGKKEIAMLVPVV 291
Query: 304 IFFLPVLILVIIGPAI 319
F LP+ + + P +
Sbjct: 292 FFILPLSVAFAVFPGL 307
>gi|170720030|ref|YP_001747718.1| type II secretion system protein [Pseudomonas putida W619]
gi|169758033|gb|ACA71349.1| type II secretion system protein [Pseudomonas putida W619]
Length = 295
Score = 118 bits (296), Expect = 1e-24, Method: Composition-based stats.
Identities = 45/243 (18%), Positives = 95/243 (39%), Gaps = 3/243 (1%)
Query: 85 KKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEY 144
L + +D L G+R + ++L +P++ +IL +I L
Sbjct: 55 SPLGQRLQKLDGETQALLDRVGWRRSRQRALFAAMQLGLPLVAVILTLIL---QQAALGS 111
Query: 145 PFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQAL 204
+ + + P ++ ++RQ I + LL I E+G++++QAL
Sbjct: 112 DGTHWLVWPLFALGASYLLPKRLLAVAARRRQQRIALEVSLMIPLLRILFETGLAVEQAL 171
Query: 205 RRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRY 264
R ++++ +SEE+ + + E +D + L Q
Sbjct: 172 RVLSQEGQALLPEISEELRQVLQRVDSGLALGPELEKSARVLAVDEFIDTCVILQQLLVQ 231
Query: 265 GTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIID 324
G+ SL L RL +++ + + K++ M++F P L++V+ GP ++
Sbjct: 232 GSGAMKSLLALKDLLDDRRLTRMQERVSKMSAKMSAVMMVFLFPALLIVLAGPGFSALTR 291
Query: 325 TMK 327
+
Sbjct: 292 ALG 294
>gi|304320651|ref|YP_003854294.1| hypothetical protein PB2503_05392 [Parvularcula bermudensis
HTCC2503]
gi|303299553|gb|ADM09152.1| hypothetical protein PB2503_05392 [Parvularcula bermudensis
HTCC2503]
Length = 330
Score = 117 bits (294), Expect = 2e-24, Method: Composition-based stats.
Identities = 60/288 (20%), Positives = 125/288 (43%), Gaps = 21/288 (7%)
Query: 8 LFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDS 67
D L V+I L +A+ + G G KR++S++ ++ + + K+
Sbjct: 2 TLDQNSLIALGIGLVAIVGLAFAL-LGFDGGGATNKRVQSLSGN---AKQAKRKTSAKEQ 57
Query: 68 ASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIF 127
R +T S SL+ K ++ + AGF ++S+ +V ++
Sbjct: 58 TRDRRKTI-SDSLKKIEDKQKEANQKKKVSLDKLIEQAGF--DFSVRDFWTASAIVAVVM 114
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
+GI ++ G + L + A+ ++G +G P ++ +KRQ + + +A+
Sbjct: 115 --IGIGYVSGQNA-------LVILAMGIVGGLG--IPRWFLYQTRRKRQKKFENEFSNAI 163
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQ 247
D+++ V+SG+ +++ L+ ++ D P+ EE L + + + E YNR
Sbjct: 164 DVIVRGVKSGLPVNECLKIISRDAQS---PVKEEFQLLVEGQRIGLTLEQSLERLYNRMP 220
Query: 248 MDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLG 295
+ V L+ + G ++ D+L L + RS + M + A S+
Sbjct: 221 ISDVNFFAIVLVIQQQTGGNLADALGNLSTVLRSRKTMLGKIAALSME 268
>gi|315652230|ref|ZP_07905225.1| conserved hypothetical protein [Eubacterium saburreum DSM 3986]
gi|315485536|gb|EFU75923.1| conserved hypothetical protein [Eubacterium saburreum DSM 3986]
Length = 284
Score = 117 bits (293), Expect = 3e-24, Method: Composition-based stats.
Identities = 46/241 (19%), Positives = 105/241 (43%), Gaps = 8/241 (3%)
Query: 83 FVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLL 142
F++ ++ + KL + + +Y ++R ++L ++ +
Sbjct: 49 FMELIHFDMNGKNARGKIKLISEIYGKQYGPYYFYLLRGGQITFGIVLTLLMFMITG--I 106
Query: 143 EYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQ 202
F+L + + + + + + +++ + R+ + R +P L L + + +G+ I +
Sbjct: 107 SGNFKLVIVGIAVSALMIWYLDEL-LNDKINARRDELLRDYPGMLSKLTLLINAGMPIRE 165
Query: 203 ALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSD 262
A +VA G L +EM T EL A++ F R + +R + +IQ+
Sbjct: 166 AWIKVANTNEGI---LYQEMKNTAMELYNGMQEAEAYKTFGERCSIKSLRKFSTMMIQNL 222
Query: 263 RYGTS-IGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILS 321
+ G++ + + LR + +E E+ E ++K KL +P I ++++II P S
Sbjct: 223 QKGSNEVVEFLRDMSTEAWEEKKHEVKRKGEKASNKLLLP-IGLIFAGVLILIIVPMFNS 281
Query: 322 I 322
+
Sbjct: 282 L 282
>gi|315497461|ref|YP_004086265.1| type II secretion system f domain protein [Asticcacaulis
excentricus CB 48]
gi|315415473|gb|ADU12114.1| Type II secretion system F domain protein [Asticcacaulis
excentricus CB 48]
Length = 326
Score = 117 bits (293), Expect = 3e-24, Method: Composition-based stats.
Identities = 51/310 (16%), Positives = 123/310 (39%), Gaps = 23/310 (7%)
Query: 14 LAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLR 73
+ +A + V + S+ + + S KR +++ + K++ + R
Sbjct: 4 ILIAFLSFVILASVGFVLTSG-GASEVAAKRAQAIGMGATTAAKRKSQRTAANRTPEERR 62
Query: 74 TRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGII 133
+ L+ ++ + ++ +L+ AG ++ + + + I ++ ++
Sbjct: 63 KQILLQLKESEQRERKARL----SLTARLQHAGL--TPNVKTFWIWSVALGIAAAVIVLV 116
Query: 134 WIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLIC 193
++ + A+ G+ AP W+S L ++R + + DA+D+L+
Sbjct: 117 V-----------SRIPLAALGAGFAFGYGAPRWWLSFLAKRRTTKFTANFADAIDILVRG 165
Query: 194 VESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRN 253
++SG+ + L+ +A+++ PL E +S ++ E R +R
Sbjct: 166 IKSGLPVHDGLKIIAKEL---PAPLGPEFQRLNENISIGMGLDMSLEKMCERMPTPELRF 222
Query: 254 ATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP--VLI 311
T + + G ++ ++L L RS R+M + KA S + +I P ++
Sbjct: 223 FTIVIAIQQKTGGNLAEALGNLSHVLRSRRMMREKIKALSSEAIASASIIGVLPPGVGIM 282
Query: 312 LVIIGPAILS 321
+ I P +
Sbjct: 283 IYITNPGYMG 292
>gi|294146460|ref|YP_003559126.1| Flp pilus assembly protein TadC [Sphingobium japonicum UT26S]
gi|292676877|dbj|BAI98394.1| Flp pilus assembly protein TadC [Sphingobium japonicum UT26S]
Length = 287
Score = 117 bits (293), Expect = 3e-24, Method: Composition-based stats.
Identities = 53/233 (22%), Positives = 107/233 (45%), Gaps = 4/233 (1%)
Query: 96 ENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVIL 155
I +KL AGF+ + + + R+ + + ++ ++ F + V++
Sbjct: 56 SEIADKLMLAGFQDARAADRFVWARMAATVGAGLAAML----VSRIGWGGFLAQPLLVVI 111
Query: 156 IGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQS 215
+ + + I L +R +I +P LDL+L+ +ESGIS+DQ R +A D
Sbjct: 112 VTGLTYVGAKQAIHLLAARRARAIMAEFPFLLDLMLMMLESGISLDQCFRSIARDEAIAV 171
Query: 216 VPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVL 275
+ + + +A+L + A + + R ++ + Q+ G + +LR
Sbjct: 172 PHHARLIAMLVADLDRGMRYEQALDRWAARVAVNGAKELAALFRQALFQGVELAPALREF 231
Query: 276 VSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMKD 328
V E R+ A + + ++ V MI+FF+P L +V+ GP +++I DT++
Sbjct: 232 VREFTQRRVANAREAMGGITVRMVVLMILFFMPALFVVLGGPPVVAIFDTLRG 284
>gi|289706419|ref|ZP_06502777.1| type II secretion system F domain protein [Micrococcus luteus SK58]
gi|289556914|gb|EFD50247.1| type II secretion system F domain protein [Micrococcus luteus SK58]
Length = 313
Score = 116 bits (292), Expect = 3e-24, Method: Composition-based stats.
Identities = 52/266 (19%), Positives = 103/266 (38%), Gaps = 9/266 (3%)
Query: 54 ILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSL 113
L +++ A R+ ++ +V++++ + +D KL AAG +
Sbjct: 50 RLLEEERAGASPWGAWGRILDPVVQAGVGWVQRISPGGVALD----RKLAAAGL--AVTS 103
Query: 114 NILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQ 173
+++ + + P V VI G GF +S +
Sbjct: 104 TDFRAQQVLSAAAGAAVAAVLALSLTVTGRVPVITGVALVIAGGMAGFLLRDQLLSLRAR 163
Query: 174 KRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLP 233
+R+ +I +P +L + V +G S AL R+A G L+ E +T+A++
Sbjct: 164 RRREAILSEFPSVAELFALSVGAGESAAGALERIA---GTARGELAGEFRVTLADMRAGA 220
Query: 234 NRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAAS 293
+ A + R Q+ V ++ + GT + D LR + R E + A
Sbjct: 221 SLSAALKAMGRRVQLAPVERFIGGVLIALDRGTPLADVLRAQAQDVREMGRRELMEAAGR 280
Query: 294 LGPKLTVPMIIFFLPVLILVIIGPAI 319
++ VP++ LP+ ++ + P I
Sbjct: 281 KEIQMMVPLVFGILPLTVIFAVFPGI 306
>gi|307943149|ref|ZP_07658494.1| type II secretion system protein [Roseibium sp. TrichSKD4]
gi|307773945|gb|EFO33161.1| type II secretion system protein [Roseibium sp. TrichSKD4]
Length = 340
Score = 116 bits (292), Expect = 3e-24, Method: Composition-based stats.
Identities = 57/320 (17%), Positives = 133/320 (41%), Gaps = 24/320 (7%)
Query: 10 DATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSAS 69
D T LAV +SI +++A++ P++ S ++R + ++ + + K ++ ++ +
Sbjct: 11 DMTALAVMGLVMLSIGGVLFALLQPAMSSD--KRRSQRISTIKGVDGKTPGLAI-RNRDA 67
Query: 70 SRLRTRDSKSLRNFVKKLNLKAILVDE-NIVNKLRAAGFRSEYSLNILLVVRLVVPIIFL 128
+ R L ++ K + D+ ++ ++ AG + + + + +V ++
Sbjct: 68 DKRRKSVKDQLDQLEQRTQQKNAMRDKPSLRLRIEQAGLS--WDVKRFIQISIVTGVLAT 125
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVG-FCAPSVWISNLVQKRQSSIKRAWPDAL 187
+ I + F + V +L G+ G F P +I+ +KR ++ P+ +
Sbjct: 126 V--IFYFFSGN----------VLIALLGGFAGAFGLPRFYINRRRKKRFTAFMEELPNGV 173
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQ 247
D+++ V++G+ + +R V+ + P+S E + + AF R
Sbjct: 174 DIIVRGVKAGLPLGDCVRVVSTEAKD---PVSTEFAKILETQKMGVSLAEAFMKLPERVP 230
Query: 248 MDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMI--IF 305
+ + G + ++L L R + ++ + A S K + +I +
Sbjct: 231 LPEANFFAIVVAIQQSSGGGLSEALNNLSRVLRGRKALKRKIVALSSEAKSSAGIIGAMP 290
Query: 306 FLPVLILVIIGPAILSIIDT 325
L L L I P ++I+ T
Sbjct: 291 VLISLALFFIAPDYINILLT 310
>gi|293189314|ref|ZP_06608037.1| type II secretion system protein [Actinomyces odontolyticus F0309]
gi|292821777|gb|EFF80713.1| type II secretion system protein [Actinomyces odontolyticus F0309]
Length = 298
Score = 116 bits (292), Expect = 3e-24, Method: Composition-based stats.
Identities = 50/269 (18%), Positives = 109/269 (40%), Gaps = 10/269 (3%)
Query: 59 QITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAI----LVDENIVNKLRAAGFRSEYSLN 114
+ S A R++ R +L + ++++ A+ E++ +L AG + ++
Sbjct: 31 RRPSFVDRVAQGRVQERPPSALVAWARRMSASALDSLGSTSESVARRLSLAGMNPD--VS 88
Query: 115 ILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIG-YVGFCAPSVWISNLVQ 173
+ + + V + L+ + + + A L+G +G +++
Sbjct: 89 VFRLRQAVAGVAGLVAACALVAARHASSLRASFIPLCACALVGTLLGVAGMDRFLTMRAN 148
Query: 174 KRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLP 233
RQ +I + PD +LL + V +G SI A+ RVA G PL E+ LT +
Sbjct: 149 ARQRAIDASVPDCSELLALAVAAGESIPAAIERVA---GCAGGPLGAELSLTAGHIRNGT 205
Query: 234 NRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAAS 293
A + RT+ + ++ L + G+ + L + R L ++
Sbjct: 206 PSVRALADLVERTESPALTRLSRTLTTAIERGSPLASVLHDQARDQRERSLAALMEEGGR 265
Query: 294 LGPKLTVPMIIFFLPVLILVIIGPAILSI 322
+ +P++ LPV ++ + P ++++
Sbjct: 266 REIAMLLPVVFLILPVTVMFALYPGLIAL 294
>gi|86739494|ref|YP_479894.1| type II secretion system protein [Frankia sp. CcI3]
gi|86566356|gb|ABD10165.1| type II secretion system protein [Frankia sp. CcI3]
Length = 316
Score = 116 bits (292), Expect = 4e-24, Method: Composition-based stats.
Identities = 47/228 (20%), Positives = 87/228 (38%), Gaps = 6/228 (2%)
Query: 97 NIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILI 156
+ +L AG S+ V +++ ++G + L P L A+I+
Sbjct: 90 ALQRRLTQAG--GRTSIEEFRVQQVICAASGALIGAFLLALRALLGVGPPALVSVALIVA 147
Query: 157 GYVG-FCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQS 215
G G A W+S + +R+ + +P +LL + V +G S AL RV+
Sbjct: 148 GTAGGVVARDYWLSRAISEREDRMLLEFPTIAELLALAVTAGESAIGALERVS---RLTH 204
Query: 216 VPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVL 275
L E+ L +A+ A E RT + + + + GT + D LR
Sbjct: 205 GELGRELRLALADARAGATLVQALEGIAARTALAPLVRFVDGMAVAIERGTPLADILRAQ 264
Query: 276 VSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSII 323
+ R + + + +P++ LP ++ PA++S
Sbjct: 265 AVDAREAGKRQLLEAGGRKEIAMMIPVVFLVLPTTVIFAFYPALVSFT 312
>gi|309810746|ref|ZP_07704553.1| type II secretion system F domain protein [Dermacoccus sp.
Ellin185]
gi|308435283|gb|EFP59108.1| type II secretion system F domain protein [Dermacoccus sp.
Ellin185]
Length = 295
Score = 116 bits (292), Expect = 4e-24, Method: Composition-based stats.
Identities = 47/279 (16%), Positives = 108/279 (38%), Gaps = 6/279 (2%)
Query: 48 VAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGF 107
VA R + +Q++ ++ + + R ++ + +L + + +++ +++ AG
Sbjct: 23 VARPRVSVLEQRLEAMLAVDSPAAAPRRGLDAVAAALARLLGRVLGGADHVRSRMERAGL 82
Query: 108 RSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVW 167
+ ++ + + + + P ++ G+ G
Sbjct: 83 VPD--VDTFRTSQALWAMTGFAGAACIVLVTGNSTRGPLSASALVLLAAGF-GVVLRDQQ 139
Query: 168 ISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIA 227
++ L ++R++ + +P D+L + V +G AL V G PL+EE+ +
Sbjct: 140 LTRLAERREARMIVEFPAIADMLALAVAAGQGPLGALEHVTTLCRG---PLAEELRTALE 196
Query: 228 ELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEA 287
+ A RT + V + +I + GT + D LR + R E
Sbjct: 197 QARAGTPLSDALAGVARRTSVVSVARFVEGVIVALERGTPLADVLRAQAQDARESVRTEL 256
Query: 288 EKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
+KA + P++ LPV +L + P + ++ T+
Sbjct: 257 VEKAGRKEVVMMAPVVFLVLPVTVLFAVYPGLAALDLTL 295
>gi|303241710|ref|ZP_07328207.1| Type II secretion system F domain protein [Acetivibrio
cellulolyticus CD2]
gi|302590711|gb|EFL60462.1| Type II secretion system F domain protein [Acetivibrio
cellulolyticus CD2]
Length = 327
Score = 116 bits (292), Expect = 4e-24, Method: Composition-based stats.
Identities = 48/214 (22%), Positives = 98/214 (45%), Gaps = 7/214 (3%)
Query: 106 GFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKL---LEYPFQLRVGAVILIGYVGFC 162
G++ + L + L+ P ++ + II F + L L + I+ G +G+
Sbjct: 76 GYKKKIQLELQRAHILLKPEEYITVSIILFFAFGTFMFVLASSSSLAILVAIVGGVIGWV 135
Query: 163 APSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEM 222
PS++I ++KR + DA+ L+ +++G S QA+ V++++ G P++EE
Sbjct: 136 LPSLYIKIKIKKRLRILNDQLNDAIVLISNSLKAGYSFFQAVDIVSKEMTG---PMAEEF 192
Query: 223 LLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSE 282
E++F + A EN R D + A++ + G ++ + L + + R
Sbjct: 193 AQLQKEVNFGTTTEKALENLVTRVTSDDLELVVTAVLIQRQVGGNLSEVLDNISTTIRER 252
Query: 283 RLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIG 316
++ E K + +++ MII LP + I+
Sbjct: 253 IRIKGEVKTVTAQGRMSG-MIIAALPPALGFILF 285
>gi|154507636|ref|ZP_02043278.1| hypothetical protein ACTODO_00117 [Actinomyces odontolyticus ATCC
17982]
gi|153797270|gb|EDN79690.1| hypothetical protein ACTODO_00117 [Actinomyces odontolyticus ATCC
17982]
Length = 298
Score = 116 bits (291), Expect = 4e-24, Method: Composition-based stats.
Identities = 49/269 (18%), Positives = 108/269 (40%), Gaps = 10/269 (3%)
Query: 59 QITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAI----LVDENIVNKLRAAGFRSEYSLN 114
+ S A R++ +L + ++++ A+ E++ +L AG + ++
Sbjct: 31 RRPSFVDRVAQGRVQEHPPSALVAWARRVSASALDSLGSTSESVARRLSLAGMNPD--VS 88
Query: 115 ILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIG-YVGFCAPSVWISNLVQ 173
+ + + V + L+ + + + A L+G +G +++
Sbjct: 89 VFRLRQAVAGVAGLVAACALVAARHASSLRASFIPLCACALVGTLLGVAGMDRFLTMRAN 148
Query: 174 KRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLP 233
RQ +I + PD +LL + V +G SI A+ RVA G PL E+ LT +
Sbjct: 149 ARQRAIDASVPDCSELLALAVAAGESIPAAIERVA---GCAGGPLGVELSLTAGHIRNGT 205
Query: 234 NRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAAS 293
A + RT+ + ++ L + G+ + L + R L ++
Sbjct: 206 PSVRALADLVERTESPALTRLSRTLTTAIERGSPLASVLHDQARDQRERSLAALMEEGGR 265
Query: 294 LGPKLTVPMIIFFLPVLILVIIGPAILSI 322
+ +P++ LPV ++ + P ++++
Sbjct: 266 REIAMLLPVVFLILPVTVMFALYPGLIAL 294
>gi|317489773|ref|ZP_07948272.1| hypothetical protein HMPREF1023_01971 [Eggerthella sp. 1_3_56FAA]
gi|316911119|gb|EFV32729.1| hypothetical protein HMPREF1023_01971 [Eggerthella sp. 1_3_56FAA]
Length = 301
Score = 116 bits (290), Expect = 6e-24, Method: Composition-based stats.
Identities = 60/238 (25%), Positives = 101/238 (42%), Gaps = 10/238 (4%)
Query: 74 TRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGII 133
T + F+ K E+ ++L AG E +R+V + L
Sbjct: 52 TEAFGAFAAFLDKRVPLTRADVESSRDRLSRAGV--ELEPETWRSIRVVSALGCAGL--- 106
Query: 134 WIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLIC 193
+ + GA G+ APS +S + R+ +I+ A PDA++LL I
Sbjct: 107 -AGVAAAGMGFEPPAFAGAAACCAACGWMAPSWALSRRERNRRRAIELALPDAMELLGIA 165
Query: 194 VESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSF-LPNRQVAFENFYNRTQMDCVR 252
+ +G I+Q R VAE + G PL+ E L E++ +R+ A E+ R + V
Sbjct: 166 IAAGSPIEQCFREVAESMDG---PLAREFSLVDREVNLLGRSREEALEHLGQRCRSQDVS 222
Query: 253 NATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVL 310
T L+Q+ G+S+ + L V + R EA ++ + KL + + + FLP
Sbjct: 223 AFTAQLMQAVSQGSSLTEGLAVQAALARETAQAEAMERIRKMPTKLDIVLSLCFLPPT 280
>gi|307295329|ref|ZP_07575168.1| Type II secretion system F domain protein [Sphingobium
chlorophenolicum L-1]
gi|306878832|gb|EFN10051.1| Type II secretion system F domain protein [Sphingobium
chlorophenolicum L-1]
Length = 287
Score = 116 bits (290), Expect = 6e-24, Method: Composition-based stats.
Identities = 53/233 (22%), Positives = 107/233 (45%), Gaps = 4/233 (1%)
Query: 96 ENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVIL 155
I KL AGF+ + + + R+ + ++ +++ F ++ +++
Sbjct: 56 SEIAGKLMLAGFQDRRAADWFVWARMGATGGVALAAML----VSRVVWGGFFVQPLLIVI 111
Query: 156 IGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQS 215
+ + + I L +R +I +P LDL+L+ +ESG+S+DQ R +A D
Sbjct: 112 VAGLTYVGAKQAIHLLAARRARAIMAEFPFLLDLMLMMLESGVSLDQCFRSIARDEAIAV 171
Query: 216 VPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVL 275
+ + + +A+L +A + + R + R Q+ G + +LR
Sbjct: 172 PHHARLIAMLVADLERGMRYDLALDRWAARVAVSGARELAALFRQALFQGVELAPALREF 231
Query: 276 VSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMKD 328
V E R+M A + + ++ V MI+FF+P L +V+ GP +++I DT++
Sbjct: 232 VREFTQRRVMRAREAMGGITVRMVVLMILFFMPALFVVLGGPPVVAIFDTLRG 284
>gi|257790324|ref|YP_003180930.1| type II secretion system protein [Eggerthella lenta DSM 2243]
gi|325830281|ref|ZP_08163738.1| type II secretion system protein F domain protein [Eggerthella sp.
HGA1]
gi|257474221|gb|ACV54541.1| type II secretion system protein [Eggerthella lenta DSM 2243]
gi|325487748|gb|EGC90186.1| type II secretion system protein F domain protein [Eggerthella sp.
HGA1]
Length = 313
Score = 116 bits (290), Expect = 6e-24, Method: Composition-based stats.
Identities = 60/238 (25%), Positives = 101/238 (42%), Gaps = 10/238 (4%)
Query: 74 TRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGII 133
T + F+ K E+ ++L AG E +R+V + L
Sbjct: 64 TEAFGAFAAFLDKRVPLTRADVESSRDRLSRAGV--ELEPETWRSIRVVSALGCAGL--- 118
Query: 134 WIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLIC 193
+ + GA G+ APS +S + R+ +I+ A PDA++LL I
Sbjct: 119 -AGVAAAGMGFEPPAFAGAAACCAACGWMAPSWALSRRERNRRRAIELALPDAMELLGIA 177
Query: 194 VESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSF-LPNRQVAFENFYNRTQMDCVR 252
+ +G I+Q R VAE + G PL+ E L E++ +R+ A E+ R + V
Sbjct: 178 IAAGSPIEQCFREVAESMDG---PLAREFSLVDREVNLLGRSREEALEHLGQRCRSQDVS 234
Query: 253 NATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVL 310
T L+Q+ G+S+ + L V + R EA ++ + KL + + + FLP
Sbjct: 235 AFTAQLMQAVSQGSSLTEGLAVQAALARETAQAEAMERIRKMPTKLDIVLSLCFLPPT 292
>gi|239917280|ref|YP_002956838.1| Flp pilus assembly protein TadC [Micrococcus luteus NCTC 2665]
gi|281414242|ref|ZP_06245984.1| Flp pilus assembly protein TadC [Micrococcus luteus NCTC 2665]
gi|239838487|gb|ACS30284.1| Flp pilus assembly protein TadC [Micrococcus luteus NCTC 2665]
Length = 313
Score = 116 bits (290), Expect = 6e-24, Method: Composition-based stats.
Identities = 52/266 (19%), Positives = 101/266 (37%), Gaps = 9/266 (3%)
Query: 54 ILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSL 113
L +++ R+ ++ +V++++ +D KL AAG +
Sbjct: 50 RLLEEERAGASPWGTWGRILDPVVQAGVGWVQRISPGGAALD----RKLAAAGL--AVTS 103
Query: 114 NILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQ 173
+++ + + P V VI G GF +S V+
Sbjct: 104 TDFRAQQVLSAAAGAAVAAVLALSLTVTGRVPVITGVALVIAGGMAGFLLREQLLSLRVR 163
Query: 174 KRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLP 233
+R+ +I +P +L + V +G S AL R+A G L+ E T+A++
Sbjct: 164 RRREAILSEFPSVAELFALSVGAGESAAGALERIA---GTARGELAGEFRTTLADMRAGA 220
Query: 234 NRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAAS 293
+ A + R Q+ V ++ + GT + D LR + R E + A
Sbjct: 221 SLSAALKAMGRRVQLAPVERFIGGVLIALDRGTPLADVLRAQAQDVREMGRRELMEAAGR 280
Query: 294 LGPKLTVPMIIFFLPVLILVIIGPAI 319
++ VP++ LP+ ++ + P I
Sbjct: 281 KEIQMMVPLVFGILPLTVIFAVFPGI 306
>gi|85711971|ref|ZP_01043025.1| Flp pilus assembly protein TadC [Idiomarina baltica OS145]
gi|85694157|gb|EAQ32101.1| Flp pilus assembly protein TadC [Idiomarina baltica OS145]
Length = 264
Score = 116 bits (290), Expect = 6e-24, Method: Composition-based stats.
Identities = 41/156 (26%), Positives = 74/156 (47%), Gaps = 2/156 (1%)
Query: 169 SNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAE 228
+ +Q+ I R PD DLL + + SG+ + AL RV++ L+ E+ +
Sbjct: 108 QRQFRSKQARIYRELPDFSDLLAMMLASGLPLIPALDRVSK--ASSMGYLANEISYVGQQ 165
Query: 229 LSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAE 288
+ + AF + +++ + + L + + G S+ ++L + R E+L AE
Sbjct: 166 IRRGRDLTSAFTGLADLYRVNALSEWCKLLNRGYQQGNSLTEALLFFSEQLRDEQLNLAE 225
Query: 289 KKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIID 324
KKA KL +P++ F PV LVI+GP + +
Sbjct: 226 KKAQEAPVKLLLPLLSCFFPVNFLVILGPIFIQLYQ 261
>gi|296129086|ref|YP_003636336.1| Type II secretion system F domain protein [Cellulomonas flavigena
DSM 20109]
gi|296020901|gb|ADG74137.1| Type II secretion system F domain protein [Cellulomonas flavigena
DSM 20109]
Length = 309
Score = 115 bits (288), Expect = 1e-23, Method: Composition-based stats.
Identities = 47/237 (19%), Positives = 97/237 (40%), Gaps = 5/237 (2%)
Query: 86 KLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYP 145
+L + ++ ++L AG ++ ++V ++ L G++
Sbjct: 74 RLVARIGSPAADLRHRLVRAG--RTETVEQFRAQQVVGGVVGLAGGLLLAVLLAATRGGA 131
Query: 146 FQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALR 205
V V+++G VG AP ++ V +R++ + P +LL + V +G AL
Sbjct: 132 LVPLVALVVVVGVVGALAPDWYLGRQVARREARLLAEMPTVTELLALAVSAGEGATGALE 191
Query: 206 RVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYG 265
RV G L++E+ T+AE A + +RT + + + + + G
Sbjct: 192 RVVRQTRG---ELADELARTLAEARAGAPLTTALQTLADRTGLPALARFAEGVAVAVERG 248
Query: 266 TSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
+ + D LR + R E + + VP++ LPV +L + P+++ +
Sbjct: 249 SPLADVLRAQAQDVREEGRRALMQTGGRKEVLMMVPVVFLILPVTVLFAVFPSVVVL 305
>gi|269926133|ref|YP_003322756.1| type II secretion system protein [Thermobaculum terrenum ATCC
BAA-798]
gi|269789793|gb|ACZ41934.1| type II secretion system protein [Thermobaculum terrenum ATCC
BAA-798]
Length = 336
Score = 114 bits (287), Expect = 1e-23, Method: Composition-based stats.
Identities = 60/308 (19%), Positives = 133/308 (43%), Gaps = 20/308 (6%)
Query: 8 LFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDS 67
+F E +T A+ IF + + + + ++R+ + R + TS +D+
Sbjct: 7 IFTQPENLAGVTVALGIFLIFLGLTL-YIKHRRWQERLHQLIG-----RHLEATSSSQDT 60
Query: 68 ASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIF 127
+ L K+L ++ + LK +++ +L AG + + ++VRL ++
Sbjct: 61 SPEILPQ---KALLSWRIREKLKDLIITPKFRRELLTAGL--GIAADKFILVRLAGALLC 115
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
L ++ I G L R A I G+ P +++ ++R S+++R P A+
Sbjct: 116 SFLVMLLIPGNYPLF------RTIAAIFGLIAGYQLPRAYLALRRKRRLSALERQLPGAI 169
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQ 247
D+L +E+G S+ QA+ A ++ P+S+E++ + + +++ A R
Sbjct: 170 DVLAGALEAGSSLAQAMMLAAREMSN---PISDELIKVVRDQELGLSQEEALRRMLERCP 226
Query: 248 MDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFL 307
+ + A+ R G S+ L+ + + R ++ E K + +++ ++
Sbjct: 227 SEDLDMMITAINIQYRVGGSLAHVLKSISTTIRERLRIKGEIKVLTAQGRISAYIVTAIP 286
Query: 308 PVLILVII 315
+L VI
Sbjct: 287 FLLTAVIF 294
>gi|254293218|ref|YP_003059241.1| type II secretion system protein [Hirschia baltica ATCC 49814]
gi|254041749|gb|ACT58544.1| type II secretion system protein [Hirschia baltica ATCC 49814]
Length = 331
Score = 114 bits (287), Expect = 2e-23, Method: Composition-based stats.
Identities = 63/315 (20%), Positives = 128/315 (40%), Gaps = 26/315 (8%)
Query: 15 AVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRT 74
+A VS+ + +A + +KR K VAV K+ + A+ R
Sbjct: 9 LIAGLAFVSVVGVGFA-FTGGGTTKAQQKRFKQVAVGAGSGGKKNSSV----DATLMRRK 63
Query: 75 RDSKSLRNFVKKLNLKAI-LVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGII 133
+ S++ ++ N + I +KL AG+ E + + V+ V ++ + GI
Sbjct: 64 QMQDSMKTLRERENKRRKDTRGRTIKDKLAQAGWTIEPA--MFWVLSAVTGVV--VAGIT 119
Query: 134 WIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLIC 193
++ G L+ P + + RQ + + D +D+++
Sbjct: 120 FVLGQTPLIIAGAGFAGALG---------LPRWVVGMGISARQKKFTQQFSDGIDVIVRG 170
Query: 194 VESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRN 253
V+SG+ + + LR +A + PL E I + + + N YNR + V
Sbjct: 171 VKSGLPLIECLRIIASE---SPAPLGTEFKRVIDAIQMGTTVEKSLSNMYNRMPLPEVNF 227
Query: 254 ATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILV 313
+ + G ++ ++L L RS +++ + KA S K + MII LP+ +++
Sbjct: 228 FGIVIGIQQQSGGNLSEALGNLSEVLRSRKMLAEKVKALSSEAKASA-MIIGALPIAVMI 286
Query: 314 IIG---PAILSIIDT 325
++ P ++++ T
Sbjct: 287 LVYFSSPDYITLLFT 301
>gi|154250693|ref|YP_001411517.1| type II secretion system protein [Parvibaculum lavamentivorans
DS-1]
gi|154154643|gb|ABS61860.1| type II secretion system protein [Parvibaculum lavamentivorans
DS-1]
Length = 328
Score = 114 bits (286), Expect = 2e-23, Method: Composition-based stats.
Identities = 50/310 (16%), Positives = 118/310 (38%), Gaps = 20/310 (6%)
Query: 18 ITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDS 77
+ +++ + + I L G + K VA + + + S + R +
Sbjct: 7 MIAGIAVLAALCIGAIGFLFVGGESRSQKRVARVTRAGNARLVAVDGEVDNSEKRRKQMQ 66
Query: 78 KSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFG 137
++L+ +K V ++ ++ AG E + + +V I F ++ +
Sbjct: 67 ETLKGLEEKQQEHKKRV--SLNTRIERAGL--EMTTRNFYIASIVTGIAFFLVFKLVGLS 122
Query: 138 YDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESG 197
+ + + GF P +S L+++RQ + + +A+D+++ V+SG
Sbjct: 123 L-----------LVSALSGFAGGFGFPRWVLSYLIKRRQKAFTEEFANAIDVIVRGVKSG 171
Query: 198 ISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQA 257
+ ++ L+ +A + P+ E + + Y R + V
Sbjct: 172 LPVNDCLKLIATE---SPEPVRTEFQGIVEGQRVGVTLEQGLAKIYERMPLPEVNFFQIV 228
Query: 258 LIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIG- 316
L + G ++ ++L L R + M + +A S K + +I P ++L+I
Sbjct: 229 LAIQQKTGGNLSEALGNLSKVLRERKKMRGKIQAMSQEAKASAGIIGSLPPGVMLLIYFS 288
Query: 317 -PAILSIIDT 325
P + ++ +
Sbjct: 289 SPGYMDVLFS 298
>gi|304390831|ref|ZP_07372783.1| type II secretion system protein [Mobiluncus curtisii subsp.
curtisii ATCC 35241]
gi|304325714|gb|EFL92960.1| type II secretion system protein [Mobiluncus curtisii subsp.
curtisii ATCC 35241]
Length = 303
Score = 114 bits (286), Expect = 2e-23, Method: Composition-based stats.
Identities = 41/248 (16%), Positives = 100/248 (40%), Gaps = 5/248 (2%)
Query: 75 RDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIW 134
RD+ N + + E++ +L AG + +R + L + +
Sbjct: 59 RDTSFSHNGLTRFLTFISPSKESVERRLELAGLPRDVCEFRRSQLRWAASLGMLAVVLSI 118
Query: 135 IFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICV 194
I + + L P + ++ G P ++ ++RQ + + PD ++LL + V
Sbjct: 119 IGFWGRTLPIPGAFVMLTCFVLA--GLLVPDYRLTGAARRRQLRLNQELPDVIELLALAV 176
Query: 195 ESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNA 254
+G + AL RV+ G + +E+ +A + + R + + +
Sbjct: 177 GAGEPLYGALHRVSARCAGVA---GQELEKILAAADNGDSLAPSLTAARARNDSEILAHL 233
Query: 255 TQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVI 314
A++ + G+ + LR V+++R+ + + + VP++ LP+ ++
Sbjct: 234 IDAIVSALERGSPLAGVLRSQVADSRAVARTQLLTEGGKKEVLMMVPVVFLILPLTVVFA 293
Query: 315 IGPAILSI 322
+ P ++++
Sbjct: 294 LYPGLVAL 301
>gi|110833084|ref|YP_691943.1| hypothetical protein ABO_0223 [Alcanivorax borkumensis SK2]
gi|110646195|emb|CAL15671.1| conserved hypothetical protein [Alcanivorax borkumensis SK2]
Length = 286
Score = 114 bits (286), Expect = 2e-23, Method: Composition-based stats.
Identities = 43/199 (21%), Positives = 84/199 (42%)
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
L L W+ L + +G VGF + ++ + + +
Sbjct: 86 LYLAFCWVLPIALALLGILLKGPFIALFLGVVGFIGSRRYFRSVAKVACHRQNQEAIEFA 145
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQ 247
LL + +E+G+SI++A R A L + + R VA + Q
Sbjct: 146 QLLSMLLEAGLSIERAFRVAAVQSRPMIPGLVHRLDRFNRLMESGAERGVALDEIGEGKQ 205
Query: 248 MDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFL 307
+ + + T+ L Q G +I +S+ L+ E + +++ +G K+TV M+IF +
Sbjct: 206 IPVLHSLTRLLKQGGALGGAISESIEQLILEAQDVEKSRIKEEVNRVGAKMTVAMMIFMM 265
Query: 308 PVLILVIIGPAILSIIDTM 326
P L +++ GPA ++I+ +
Sbjct: 266 PALFIIVGGPAGVNIVQAI 284
>gi|92116009|ref|YP_575738.1| type II secretion system protein [Nitrobacter hamburgensis X14]
gi|91798903|gb|ABE61278.1| type II secretion system protein [Nitrobacter hamburgensis X14]
Length = 324
Score = 114 bits (286), Expect = 2e-23, Method: Composition-based stats.
Identities = 62/320 (19%), Positives = 128/320 (40%), Gaps = 29/320 (9%)
Query: 9 FDATELAVAITTAVSIFSLIYAVVIPSLGSG-ELEKRMKSVAVEREILRKQQITSLQKDS 67
+ LA+A A ++ + + + P+L + EKR + A + Q D
Sbjct: 1 MNLQTLAMAFMAATAVGGVAWVFLYPALSGEAKAEKRRSAFA-------RTAPAVRQVDR 53
Query: 68 ASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIF 127
A R + SLR ++ + + + +++ AG +S L +V I
Sbjct: 54 AQRSRREQIEGSLREIEQRQKRDSKI---TLNDRIAQAGLS--WSKEKFL---IVSGIFG 105
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
+ + +F + AV L GF P + L +R+ + RA PDA+
Sbjct: 106 AVCFAVPMF--------SGAGPIAAVGLAFAAGFGLPRWLLGFLKTRREKAFLRALPDAV 157
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQ 247
D+++ +++G+ + ++++ VA D PL E I + A Y R
Sbjct: 158 DVIVRGIKAGLPLFESIKVVAAD---SPEPLKSEFAAIIETQAIGMPLGEACARLYERMP 214
Query: 248 MDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFL 307
+ + + G ++ ++L L R + M + +A S+ K + +I
Sbjct: 215 VPEANFFGIVIAIQQKSGGNLSEALGNLSKVLRDRKKMAEKIQAMSMEAKASAAIIGSLP 274
Query: 308 PVLILV--IIGPAILSIIDT 325
PV++++ + P ++++ T
Sbjct: 275 PVVMMLVYLTTPDYIAMLWT 294
>gi|91977989|ref|YP_570648.1| type II secretion system protein [Rhodopseudomonas palustris BisB5]
gi|91684445|gb|ABE40747.1| type II secretion system protein [Rhodopseudomonas palustris BisB5]
Length = 324
Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats.
Identities = 60/316 (18%), Positives = 128/316 (40%), Gaps = 31/316 (9%)
Query: 14 LAVAITTAVSIFSLIYAVVIPSL-GSGELEKRMKSVAVEREILRKQQITSLQKDSASSRL 72
L++ AV++ L + + P L G + EKR SVA +R+ + T +
Sbjct: 6 LSLGFFAAVAVGGLAWVFLYPMLSGEKQAEKRRSSVARVTPAVRQVERTQRSR------- 58
Query: 73 RTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGI 132
R + SLR+ + K + + +L AG +++ + + V+ + + +
Sbjct: 59 REQVEGSLRDIEAR---KQKQKNVALSTRLTQAGL--DWTPKKFITISAVLGVFVFAVTM 113
Query: 133 IWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLI 192
++ G F G P + L ++R+ A PDA+D+++
Sbjct: 114 LFGGGLTAAAGLAFAAGFGL-----------PRWMLGFLKKRREKRFLNALPDAVDVIVR 162
Query: 193 CVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVR 252
+++G+ + +++ VA D PL E I + A Y+R +
Sbjct: 163 GIKAGLPLFDSIKVVAAD---SPEPLKTEFNAIIETQTIGMPIGEACARLYDRMPVPEAN 219
Query: 253 NATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLIL 312
+ + G ++ ++L L R + M + +A S+ K + II LP +++
Sbjct: 220 FFGIVIAIQQKSGGNLSEALGNLSKVLRDRKRMAEKIQAMSMEAKASAA-IIGSLPPIVM 278
Query: 313 VIIG---PAILSIIDT 325
+++ P ++++ T
Sbjct: 279 LLVYMSTPDYIALLWT 294
>gi|104779904|ref|YP_606402.1| type II/IV secretion system membrane protein [Pseudomonas
entomophila L48]
gi|95108891|emb|CAK13587.1| putative type II/IV secretion system membrane protein [Pseudomonas
entomophila L48]
Length = 295
Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats.
Identities = 49/273 (17%), Positives = 107/273 (39%), Gaps = 5/273 (1%)
Query: 58 QQITSLQKDSASSRLRTRDSKSLRNFVKK--LNLKAILVDENIVNKLRAAGFRSEYSLNI 115
+ + + R ++ L + +D L G+R +
Sbjct: 26 RARQRVARRLQGRMARDERLGDWLQWLGSSPLGRRLQRLDGETQALLDRLGWRRSRQRAL 85
Query: 116 LLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKR 175
V+L +P++ +I+ ++ + G + + V + G+ P ++ +R
Sbjct: 86 FAAVQLGLPLLAMIVVLVMVHGLPGERRGHWVVLVLCAL---GAGYLLPKRLLAAAAARR 142
Query: 176 QSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNR 235
Q I R + LL I E+G++++QALR +A++ +S+E+ L + +
Sbjct: 143 QRRIAREVSVLIPLLRILFETGLAVEQALRVLAQEGRSLVPNISDELRLVLQRVDSGLAL 202
Query: 236 QVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLG 295
E +D + + L Q G+ SL L RL +++ + +
Sbjct: 203 GPELEKSARLLAVDELIDTCVILQQLLVQGSGSMKSLLALKELLDDRRLTGLQERVSKMS 262
Query: 296 PKLTVPMIIFFLPVLILVIIGPAILSIIDTMKD 328
K++ M++F P L++V+ GP ++ +
Sbjct: 263 AKMSAVMMVFLFPALLIVLAGPGFSALARALGS 295
>gi|315656392|ref|ZP_07909281.1| type II secretion system protein [Mobiluncus curtisii subsp.
holmesii ATCC 35242]
gi|315492951|gb|EFU82553.1| type II secretion system protein [Mobiluncus curtisii subsp.
holmesii ATCC 35242]
Length = 303
Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats.
Identities = 41/248 (16%), Positives = 100/248 (40%), Gaps = 5/248 (2%)
Query: 75 RDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIW 134
RD+ N + + E++ +L AG + +R + L + +
Sbjct: 59 RDTSFSHNGLTRFLTFISPSKESVERRLELAGLPRDLCEFRRSQLRWAASLGVLAVVLSI 118
Query: 135 IFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICV 194
I + + L P + ++ G P ++ ++RQ + + PD ++LL + V
Sbjct: 119 IGFWGRTLPIPGAFVMLTCFVLA--GLLVPDYRLTGAARRRQLRLNQELPDVIELLALAV 176
Query: 195 ESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNA 254
+G + AL RV+ G + +E+ +A + + R + + +
Sbjct: 177 GAGEPLYGALHRVSARCAGVA---GQELEKILAAADNGDSLAPSLTAARARNDSEILAHL 233
Query: 255 TQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVI 314
A++ + G+ + LR V+++R+ + + + VP++ LP+ ++
Sbjct: 234 IDAIVSALERGSPLAGVLRSQVADSRAVARTQLLTEGGKKEVLMMVPVVFLILPLTVVFA 293
Query: 315 IGPAILSI 322
+ P ++++
Sbjct: 294 LYPGLVAL 301
>gi|240139030|ref|YP_002963505.1| Pilus assembly protein, type II secretion protein [Methylobacterium
extorquens AM1]
gi|240009002|gb|ACS40228.1| Pilus assembly protein, type II secretion protein [Methylobacterium
extorquens AM1]
Length = 323
Score = 113 bits (284), Expect = 3e-23, Method: Composition-based stats.
Identities = 52/285 (18%), Positives = 109/285 (38%), Gaps = 27/285 (9%)
Query: 19 TTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSK 78
AV+ SL Y ++P+L R R++ + Q A +
Sbjct: 12 LVAVAAGSLAYVFLMPALSG-----------ERRAEQRRKALGQPQAVLAERGAAASRRE 60
Query: 79 SLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGY 138
+ +K+L K + +L AG ++S VV ++ ++ ++ +
Sbjct: 61 QVAKSLKELEAKKDKTKVTLELRLARAGL--DWSRQKYRVVSVITAVVLALVAFLASHNV 118
Query: 139 DKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGI 198
+ A + + GF P+ W+ ++R + P+A+D+++ + SGI
Sbjct: 119 -----------IVAGLALFVGGFGLPAWWLKRRQKRRVEAFIEELPNAMDVVVRGLRSGI 167
Query: 199 SIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQAL 258
+ LR +A + PL E +T+ + + A Y R + V + +
Sbjct: 168 PLGDCLRMIAREAKE---PLRSEFRVTMESQALGLSMSDAILRMYERVPVTEVNFFSIVI 224
Query: 259 IQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMI 303
+ G ++ ++L L R + M + +A S+ K + +I
Sbjct: 225 GIQQKAGGNLSEALGNLSRVLRERKKMAGKIQAMSMEAKASAAII 269
>gi|325291655|ref|YP_004277519.1| components of type IV pilus [Agrobacterium sp. H13-3]
gi|325059508|gb|ADY63199.1| components of type IV pilus [Agrobacterium sp. H13-3]
Length = 334
Score = 113 bits (284), Expect = 3e-23, Method: Composition-based stats.
Identities = 65/327 (19%), Positives = 128/327 (39%), Gaps = 24/327 (7%)
Query: 9 FDATELAVAITTAVSIFSLIYA-VVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDS 67
D T L +A A+S +L YA + + R+K V E + +
Sbjct: 1 MDPTILLLAALVAISAGALAYAFLFQQIEVEKKTTSRVKRVKAA-ETDHANIKAARDRVQ 59
Query: 68 ASSRLRTRDSKSLRNFVKKLNLKAILVDE-NIVNKLRAAGFRSEYSLNILLVVRLVVPII 126
+ R SLR KK + KA + KL AG + S+ ++
Sbjct: 60 ELGKRRKSMQDSLREMEKKQSEKAKKAKNVGLREKLVQAGL--QLSVRQFHLLSAGAAAF 117
Query: 127 FLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDA 186
+++ +++ + A+++ V P + ++++RQ +P+A
Sbjct: 118 SVVIALLYGLSL-----------LIALLIGAVVALGLPRWVLGFILKRRQKKFLEEFPNA 166
Query: 187 LDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRT 246
LD++ ++SG+ ++ A+R +A D P+ E + E
Sbjct: 167 LDVMCRSIKSGLPLNDAVRLIASDGQE---PVKTEFQRVVDAQQVGIGIPQGIERMMLTV 223
Query: 247 QMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFF 306
+ V + + + G ++ ++L L R R M A+ A S+ K + II
Sbjct: 224 PLFEVSFFSTVINIQAQAGGNLSEALSNLSKVLRERRKMRAKVNALSMEAKASAV-IIGA 282
Query: 307 LPVLILVII---GPAILSIIDT-MKDH 329
LP ++++++ P LS++ T M+ H
Sbjct: 283 LPFIVMLLVHFTSPDYLSVLFTDMRGH 309
>gi|221195413|ref|ZP_03568468.1| putative type II secretion system protein [Atopobium rimae ATCC
49626]
gi|221184600|gb|EEE16992.1| putative type II secretion system protein [Atopobium rimae ATCC
49626]
Length = 248
Score = 113 bits (283), Expect = 4e-23, Method: Composition-based stats.
Identities = 41/220 (18%), Positives = 87/220 (39%), Gaps = 16/220 (7%)
Query: 113 LNILLVVRLVVPIIFLILGIIWIFGYDK------------LLEYPFQLRVGAVILIGYVG 160
+ +LL + V + ++G +W+F K L + ++ + +
Sbjct: 25 VMMLLRIVFVGGVAGSLMGSVWLFTSVKSPIQKHGTQDHGLRSKRLNSWLQEILSVAGIL 84
Query: 161 FCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSE 220
V + ++++I + P LD+L + + SG+S D +L G LSE
Sbjct: 85 KIVREVTKRKRIAHQRNAIIKEMPRMLDVLTLGLSSGLSFDSSLDLYCNRCSG---VLSE 141
Query: 221 EMLLTIAELSFLPN-RQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSET 279
+M + R A E + + + + +S +GT + DSL
Sbjct: 142 KMSQALLSWQMGATTRSTALEEIAAEYGITSLLSFASVVTESLAFGTPLSDSLERQAGTI 201
Query: 280 RSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAI 319
R ++ E + + K+ +P+ +P +++ I+GP +
Sbjct: 202 RDDQRAALEAEIEKVPVKMLLPLGTLIVPAMLIAILGPLL 241
>gi|254561625|ref|YP_003068720.1| Pilus assembly protein, type II secretion protein [Methylobacterium
extorquens DM4]
gi|254268903|emb|CAX24864.1| Pilus assembly protein, type II secretion protein [Methylobacterium
extorquens DM4]
Length = 323
Score = 113 bits (283), Expect = 4e-23, Method: Composition-based stats.
Identities = 59/285 (20%), Positives = 114/285 (40%), Gaps = 27/285 (9%)
Query: 19 TTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSK 78
AV+ SL Y ++P+L A +R Q L + A++ R + +K
Sbjct: 12 LVAVAAGSLAYVFLMPALSGERR-------AEQRRKALGQPKAVLAERGAAASRREQVAK 64
Query: 79 SLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGY 138
SL+ L K + +L AG ++S R+V I ++L + F
Sbjct: 65 SLKE----LEAKKDKTKVTLELRLARAGL--DWSRQKY---RVVSAITAVVLALAAFFVS 115
Query: 139 DKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGI 198
+ + A + + GF P+ W+ ++R + P+A+D+++ + SGI
Sbjct: 116 HNV--------IVAGLALFVGGFGLPAWWLKRRQRRRVEAFIEELPNAMDVVVRGLRSGI 167
Query: 199 SIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQAL 258
+ LR +A + PL E +T+ + + A Y R + V + +
Sbjct: 168 PLGDCLRMIAREAKE---PLRSEFRVTMESQALGLSMSDAILRMYERVPVTEVNFFSIVI 224
Query: 259 IQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMI 303
+ G ++ ++L L R + M + +A S+ K + +I
Sbjct: 225 GIQQKAGGNLSEALGNLSRVLRERKKMAGKIQAMSMEAKASAAII 269
>gi|315655694|ref|ZP_07908592.1| type II secretion system protein [Mobiluncus curtisii ATCC 51333]
gi|315489758|gb|EFU79385.1| type II secretion system protein [Mobiluncus curtisii ATCC 51333]
Length = 303
Score = 113 bits (283), Expect = 4e-23, Method: Composition-based stats.
Identities = 41/248 (16%), Positives = 98/248 (39%), Gaps = 5/248 (2%)
Query: 75 RDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIW 134
RD N + K E++ +L AG + +R + L + +
Sbjct: 59 RDISFSPNGLTKFLTFISPSKESVERRLDLAGLPKDVCEFRRSQLRWAASLGMLAVVLSI 118
Query: 135 IFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICV 194
I + + L P + ++ G P ++ ++RQ + + PD ++LL + V
Sbjct: 119 IGFWGRTLPIPGAFVMLTCFVLA--GLLVPDYRLTGAARRRQLRLNQELPDVIELLALAV 176
Query: 195 ESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNA 254
+G + AL RV+ + +E+ +A + + R + + +
Sbjct: 177 GAGEPLYGALHRVSARCTDVA---GQELEKILAAADNGDSLAPSLTAARARNDSEILAHL 233
Query: 255 TQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVI 314
A++ + G+ + LR V+++R+ + + + VP++ LP+ ++
Sbjct: 234 IDAIVSALERGSPLASVLRSQVADSRAVARTQLLTEGGKKEVLMMVPVVFLILPLTVVFA 293
Query: 315 IGPAILSI 322
+ P ++++
Sbjct: 294 MYPGLVAL 301
>gi|163851907|ref|YP_001639950.1| type II secretion system protein [Methylobacterium extorquens PA1]
gi|163663512|gb|ABY30879.1| type II secretion system protein [Methylobacterium extorquens PA1]
Length = 323
Score = 113 bits (282), Expect = 5e-23, Method: Composition-based stats.
Identities = 52/285 (18%), Positives = 107/285 (37%), Gaps = 27/285 (9%)
Query: 19 TTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSK 78
AV+ SL Y ++P+L R R++ + Q A +
Sbjct: 12 LVAVAAGSLAYVFLMPALSG-----------ERRAEQRRKALGQPQAVLAERGAAASRRE 60
Query: 79 SLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGY 138
+ +K+L K + +L AG ++S VV + ++ + +
Sbjct: 61 QVAKSLKELEAKKDKTKVTLELRLARAGL--DWSRQKYRVVSAITAVVLALAAFLVSHNV 118
Query: 139 DKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGI 198
+ A + + GF P+ W+ ++R + P+A+D+++ + SGI
Sbjct: 119 -----------IVAGLALFVGGFGLPAWWLKRRQKRRVEAFIEELPNAMDVVVRGLRSGI 167
Query: 199 SIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQAL 258
+ LR +A + PL E +T+ + + A Y R + V + +
Sbjct: 168 PLGDCLRMIAREAKE---PLRSEFRVTMESQALGLSMSDAILRMYERVPVTEVNFFSIVI 224
Query: 259 IQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMI 303
+ G ++ ++L L R + M + +A S+ K + +I
Sbjct: 225 GIQQKAGGNLSEALGNLSRVLRERKKMAGKIQAMSMEAKASAAII 269
>gi|284029668|ref|YP_003379599.1| type II secretion system protein [Kribbella flavida DSM 17836]
gi|283808961|gb|ADB30800.1| type II secretion system protein [Kribbella flavida DSM 17836]
Length = 312
Score = 112 bits (281), Expect = 6e-23, Method: Composition-based stats.
Identities = 46/226 (20%), Positives = 86/226 (38%), Gaps = 5/226 (2%)
Query: 97 NIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILI 156
+I +L AG + S+ + +++ G++ + L+
Sbjct: 87 SIRRRLARAGI--DRSVEEFRIEQVLWGTAGFGGGLLVSLIALSFGAGNPVGLLVFCALL 144
Query: 157 GYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSV 216
+G + +++ V+KR+ + P +LL + V +G AL RVA G
Sbjct: 145 AVLGVLSRDTYLTGQVRKRERRLLAELPTVAELLALSVAAGEGPAAALDRVARSCRG--- 201
Query: 217 PLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLV 276
L++E+ +AE + A + +RT + + L + GT + D LR
Sbjct: 202 ELADELQRVLAETRAGSSLVRALDGLADRTGLVALSRFADGLAVALERGTPLADVLRAQA 261
Query: 277 SETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
+ R E + A + VP++ LPV I P + I
Sbjct: 262 GDIREASRRELIESGARREVAMMVPVVFLVLPVTIAFAFYPGAVGI 307
>gi|311697136|gb|ADQ00008.1| type II secretion system protein-like protein [marine bacterium
HP15]
Length = 290
Score = 112 bits (281), Expect = 6e-23, Method: Composition-based stats.
Identities = 46/232 (19%), Positives = 96/232 (41%), Gaps = 13/232 (5%)
Query: 96 ENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVIL 155
+ + L A G + S L ++P+ + +P + A ++
Sbjct: 71 KELEPSLDATGLTAFDSRKRYLASCWLLPVAAGCVA------------FPLMDFIAACVV 118
Query: 156 IGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQS 215
+ ++ F P I + R + + + VE+G+S +++L+ ++
Sbjct: 119 L-FLAFFVPRKAIRAAGLTAEKEQNREAIELCQMTRMLVEAGLSPERSLKLISHQARELM 177
Query: 216 VPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVL 275
L + + +R VA + + +RN + QS G+ + L +
Sbjct: 178 PRLIRRIDRFNRVMESGADRTVALDELGKNRNLTVLRNYVSLMKQSGTLGSKVAGGLDQI 237
Query: 276 VSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
V E + E +++ +G ++TV M++F LP L L+I GPA+L+I+D +
Sbjct: 238 VEEAQHEERSNLKEETNKIGARMTVIMMVFMLPSLFLLIGGPAVLAIMDAFQ 289
>gi|15963898|ref|NP_384251.1| hypothetical protein SMc02821 [Sinorhizobium meliloti 1021]
gi|307315795|ref|ZP_07595309.1| Type II secretion system F domain protein [Sinorhizobium meliloti
BL225C]
gi|15073073|emb|CAC41532.1| Hypothetical transmembrane protein [Sinorhizobium meliloti 1021]
gi|306898563|gb|EFN29236.1| Type II secretion system F domain protein [Sinorhizobium meliloti
BL225C]
Length = 336
Score = 112 bits (281), Expect = 7e-23, Method: Composition-based stats.
Identities = 56/288 (19%), Positives = 117/288 (40%), Gaps = 19/288 (6%)
Query: 40 ELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIV 99
+ E R++ V+ E R + + + + S+ R SL+ KK K+ ++
Sbjct: 36 KAEGRLRRVSA-SETDRTKIKAARDRVNEMSKRRKSVQDSLKELEKKQQEKSANTAPSMK 94
Query: 100 NKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYV 159
+L AG SL + + + ++ ++ G L V LIG
Sbjct: 95 KRLLQAGLS--ISLAQFYLFSALFGLFAFLVVLLAGAGL---------LIAAGVALIGAA 143
Query: 160 GFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLS 219
G P + ++V++R +P++LD+++ ++SG+ ++ ALR +A D P+
Sbjct: 144 G--LPRWIVGSMVKRRCRKFLDEFPNSLDVMVRSIKSGLPLNDALRLIASDGQE---PVR 198
Query: 220 EEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSET 279
E + N A + + V + + G ++ ++L L
Sbjct: 199 TEFRRVVESQQVGLNVPEACARMIHSIPLPEVNFFAIVIAIQAQAGGNLSEALGNLSKVL 258
Query: 280 RSERLMEAEKKAASLGPKLTVPMI--IFFLPVLILVIIGPAILSIIDT 325
R R M+A+ A S+ K + +I + F+ ++ + P + ++ T
Sbjct: 259 RERRKMKAKVSALSMEAKASACIIGALPFIVATLVYLTSPDYMMVLFT 306
>gi|325111218|ref|YP_004272286.1| type II secretion system F domain protein [Planctomyces
brasiliensis DSM 5305]
gi|324971486|gb|ADY62264.1| Type II secretion system F domain protein [Planctomyces
brasiliensis DSM 5305]
Length = 286
Score = 112 bits (281), Expect = 7e-23, Method: Composition-based stats.
Identities = 46/195 (23%), Positives = 79/195 (40%), Gaps = 4/195 (2%)
Query: 122 VVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKR 181
+ P+ L+L +++ L+ + Q L +VGF P + + +RQ I R
Sbjct: 53 MAPVAVLMLCVLFAVSLGGLI-FVLQENPLTTGLAAFVGFVIPLGILMTMRSRRQGQILR 111
Query: 182 AWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFEN 241
P +D L +G S+DQ L VA D PL +EM ++ +L A
Sbjct: 112 QLPPMIDELARAARTGRSLDQCLEMVATD---TPAPLGDEMERSVRKLQMGVTMNEALYE 168
Query: 242 FYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVP 301
RT ++ +R AL + G + L L R + +A + G + T
Sbjct: 169 LPERTGVNGLRILATALSVHQQTGGDLVRVLERLARTLRDRGMFLGRLRAITAGSRATAL 228
Query: 302 MIIFFLPVLILVIIG 316
++I P +++ I
Sbjct: 229 LMILLPPAILVFFIF 243
>gi|254473793|ref|ZP_05087188.1| type II secretion system protein [Pseudovibrio sp. JE062]
gi|211957179|gb|EEA92384.1| type II secretion system protein [Pseudovibrio sp. JE062]
Length = 339
Score = 112 bits (281), Expect = 7e-23, Method: Composition-based stats.
Identities = 42/312 (13%), Positives = 117/312 (37%), Gaps = 23/312 (7%)
Query: 15 AVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRT 74
+ +S+ + + ++ P +L KR +S+ + K L + ++
Sbjct: 16 LITALIMISVVGVTFTLLAPLFSKDKLGKRKESLVQKDISGLKGSNKKLDITARRKSVQD 75
Query: 75 RDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIW 134
+ + K + + + AG ++ ++ ++ ++ ++
Sbjct: 76 QLNAMEAAQAAKKKNADKPI---FADWIGQAGL--NWTKPRYYAYSVICGVLLFLVSML- 129
Query: 135 IFGYDKLLEYPFQLRVGAVILIGYVG-FCAPSVWISNLVQKRQSSIKRAWPDALDLLLIC 193
+ + + +VG F P ++S +KR + +P+A+D+++
Sbjct: 130 -----------SGQSIWISLALLFVGIFGLPRFYVSRARKKRFNRFLEEFPNAVDIIVRG 178
Query: 194 VESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRN 253
++SG+ + + A + P+ E L + ++ A ++ R +
Sbjct: 179 IKSGMPLGDCMHIAASEAKD---PVGTEFSLVLDKMQMGMPLAEAIQSLPKRVPLQETNF 235
Query: 254 ATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMI--IFFLPVLI 311
+ + G S+ ++L L R + M+ + +A S K + +I + F+ +
Sbjct: 236 LAIVVTIQAQAGGSLSEALGNLSKTLRQRKEMKGKIRAVSQEAKSSAAIIGSLPFIVTAL 295
Query: 312 LVIIGPAILSII 323
L ++ P + ++
Sbjct: 296 LFVLSPDYIKLL 307
>gi|329946365|ref|ZP_08293932.1| bacterial type II secretion system protein F domain protein
[Actinomyces sp. oral taxon 170 str. F0386]
gi|328527341|gb|EGF54339.1| bacterial type II secretion system protein F domain protein
[Actinomyces sp. oral taxon 170 str. F0386]
Length = 317
Score = 112 bits (280), Expect = 8e-23, Method: Composition-based stats.
Identities = 56/288 (19%), Positives = 113/288 (39%), Gaps = 14/288 (4%)
Query: 41 LEKRMKSVAVEREILRKQQITSLQKDSASSRL----RTRDSKSLRNFVKKLNLKAILVD- 95
L +R ++ E +Q T+ +A + L RT + + LNL +L
Sbjct: 28 LRRRRPTLMARLEPYVHRQPTTSGLLTAPAGLASDGRTVVGLLMASTAGTLNLGRLLDSL 87
Query: 96 ----ENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVG 151
+++ +L +G S SL+ + +++ L+L + + +
Sbjct: 88 GSSADSVRRRLTRSG--SPLSLDQFRLQQVLWSTTALLLVLAAGGLAALVRSVNVPALIV 145
Query: 152 AVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDI 211
++ G A W+S V KR S I+ PD ++LL + V +G A+ RV
Sbjct: 146 LSLMATVSGAAARDWWLSRAVAKRLSRIETQLPDVVELLALAVGAGQGPVAAIERVVALG 205
Query: 212 GGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDS 271
G L +E+ T+ ++ A + R V +A++ + GT + +
Sbjct: 206 RG---DLIDELGTTLTDIRSGTVLSTALDRMERRVGSVHVTRLCEAIVVALERGTPLAEV 262
Query: 272 LRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAI 319
LR ++ R + ++ VP++ LP+ ++ + P +
Sbjct: 263 LRSQATDVREAARQDLMEEGGRREIAQMVPVVFLVLPITVVFALFPGL 310
>gi|312199821|ref|YP_004019882.1| type II secretion system F [Frankia sp. EuI1c]
gi|311231157|gb|ADP84012.1| Type II secretion system F domain protein [Frankia sp. EuI1c]
Length = 323
Score = 112 bits (280), Expect = 9e-23, Method: Composition-based stats.
Identities = 45/227 (19%), Positives = 89/227 (39%), Gaps = 6/227 (2%)
Query: 98 IVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIG 157
+V +L AG S+ ++++ + ++G + + + P + A+I+ G
Sbjct: 98 LVRRLTQAG--GRTSVEEFRTQQVILAVAGGLVGAVLLVPRAVIGVGPPPVVGVALIVAG 155
Query: 158 YVGFCA-PSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSV 216
G W++ ++ R+ + +P +LL + V +G S AL RVA
Sbjct: 156 VAGGVVGREWWLTRAIRAREDRMLMEFPTIAELLALAVTAGESPVGALERVA---RLTHG 212
Query: 217 PLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLV 276
L E+ L +A+ A E RT + + + + GT + D LR
Sbjct: 213 ELGYELRLALADARAGATLVQALEGIATRTTLGSLARFVDGMAVAIERGTPLADVLRAQA 272
Query: 277 SETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSII 323
+ R + + + VP++ LP ++ PA++S
Sbjct: 273 VDVREAGRRQLLESGGRKEIAMMVPVVFLVLPTTVIFAFYPALVSFT 319
>gi|87199098|ref|YP_496355.1| type II secretion system protein [Novosphingobium aromaticivorans
DSM 12444]
gi|87134779|gb|ABD25521.1| type II secretion system protein [Novosphingobium aromaticivorans
DSM 12444]
Length = 324
Score = 112 bits (280), Expect = 1e-22, Method: Composition-based stats.
Identities = 61/303 (20%), Positives = 116/303 (38%), Gaps = 27/303 (8%)
Query: 13 ELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRL 72
+L + T + L YA + S E+ +R++SV ++ + L
Sbjct: 6 QLLLMSTGLMVAMVLGYAALSGPSASKEVNRRLQSVRFRHSESTLDKVEA----QYRKTL 61
Query: 73 RTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGI 132
R K++R L E + +L G ++L+ L V + I+ +L
Sbjct: 62 AARKPKTMRPAGSSSRL------EALELRLHRTG--KGWTLSQYLYVSGGLAILIFLL-- 111
Query: 133 IWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLI 192
+ + A+ ++G P + + + KR + PDALDLL+
Sbjct: 112 ---------VYLRTGAPLLALGSGIFIGGGLPHMLVGRAINKRIDNFVTRLPDALDLLVR 162
Query: 193 CVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVR 252
+ SG+ + + L VA ++ G P+ EE L + + A ++ +R +
Sbjct: 163 GLRSGLPVTETLGVVAAELPG---PVGEEFKLVTDRIKVGRTMEEALQDTADRLNLPEFN 219
Query: 253 NATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLIL 312
L G ++ ++L L R M+ + KA S K + I+ LP ++
Sbjct: 220 FFCITLAIQRETGGNLAETLSNLSDVLRKRAQMKLKIKAMSSESKASA-YIVGALPFIVF 278
Query: 313 VII 315
+I
Sbjct: 279 ALI 281
>gi|146338119|ref|YP_001203167.1| putative pilus assembly protein membrane protein [Bradyrhizobium
sp. ORS278]
gi|146190925|emb|CAL74930.1| putative pilus assembly protein; putative membrane protein
[Bradyrhizobium sp. ORS278]
Length = 324
Score = 112 bits (280), Expect = 1e-22, Method: Composition-based stats.
Identities = 55/306 (17%), Positives = 121/306 (39%), Gaps = 31/306 (10%)
Query: 24 IFSLIYAVVIPSLGSGE-LEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRN 82
I + + + P L E+R SVA ++R+ + + R + SL++
Sbjct: 16 IGGIAWVFIYPMLSGERKAEQRRSSVAKAEPVVRQVERNQRSR-------REQVESSLKD 68
Query: 83 FVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLL 142
K ++ + + ++ AG ++++ ++ V+ + + G L
Sbjct: 69 LEAKAQKQSKVP---LNIRISQAGL--DWTVQKFWIISGVLGFVVCAVAFFAGGGPLGAL 123
Query: 143 EYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQ 202
F G P + L ++R+ A PDA+D+++ +++G+ + +
Sbjct: 124 GLGF-----------AAGLGLPRWILGYLKKRREKKFLAALPDAVDVIVRGIKAGLPLFE 172
Query: 203 ALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSD 262
+++ VA D PL E L I + A Y R + +
Sbjct: 173 SIKVVAAD---APEPLRSEFLAIIETQAIGMPLGEACARLYERMPLPEANFFGIVIAIQQ 229
Query: 263 RYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIG---PAI 319
+ G ++ ++L L R + M + +A S+ K + II LP ++++++ P
Sbjct: 230 KSGGNLSEALGNLSKVLRDRKKMAEKIQAMSMEAKASAG-IIGSLPPIVMLLVYLSTPDY 288
Query: 320 LSIIDT 325
+S++ T
Sbjct: 289 ISLLWT 294
>gi|258651872|ref|YP_003201028.1| type II secretion system protein [Nakamurella multipartita DSM
44233]
gi|258555097|gb|ACV78039.1| type II secretion system protein [Nakamurella multipartita DSM
44233]
Length = 311
Score = 111 bits (279), Expect = 1e-22, Method: Composition-based stats.
Identities = 54/292 (18%), Positives = 108/292 (36%), Gaps = 10/292 (3%)
Query: 33 IPSLGSGELEKRMK-SVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKA 91
P L L R+ VA R ++ S RL + FV K+
Sbjct: 25 TPPLRRPTLSDRIAPYVADAGGQSRLLAGSAPGPRSTLGRLAAPLLRDAVRFVDKIMGGR 84
Query: 92 ILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVG 151
V+ + S +++ + ++V + G L + + +
Sbjct: 85 GSVERRLTA------ISSPLTVDQFRIEQVVWGSLGAAAGAGIGLLAVVLGQSNPFILLL 138
Query: 152 AVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDI 211
+++ G W++ V K++ I +P ++L + V +G S AL RV +
Sbjct: 139 LIVVSAAAGVLGRDWWLTQAVSKQEEEIIAEFPVIAEMLALSVTAGESPTGALDRVTK-- 196
Query: 212 GGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDS 271
PL ++ +AE A + +RT+++ + + + GT + D
Sbjct: 197 -LAHGPLVSQLSGVLAETRAGTPFLTALTHLRDRTRLEPLARFLDGMAVAIERGTPLADV 255
Query: 272 LRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSII 323
LR ++ R+ + + + VP++ LP+ IL + P +L+I
Sbjct: 256 LRAQAADVRALSKRQLLESGGRKEIAMMVPVVFLVLPITILFALYPGLLAIT 307
>gi|320531262|ref|ZP_08032241.1| type II secretion system F domain protein [Actinomyces sp. oral
taxon 171 str. F0337]
gi|320136529|gb|EFW28498.1| type II secretion system F domain protein [Actinomyces sp. oral
taxon 171 str. F0337]
Length = 317
Score = 111 bits (279), Expect = 1e-22, Method: Composition-based stats.
Identities = 43/236 (18%), Positives = 91/236 (38%), Gaps = 5/236 (2%)
Query: 84 VKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLE 143
+ +L +++ +L +G S ++ + +++ L+L +
Sbjct: 80 LGRLMDSLGSSADSVRRRLTRSG--SPLGVDQFRLQQVLWSTTALLLVLAAGGLAALARS 137
Query: 144 YPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQA 203
+ ++ G A W+S V +R S I+ PD ++LL + V +G A
Sbjct: 138 VNVPALILLCLMATVAGAAARDWWLSRAVARRLSRIEAQLPDIVELLALAVGAGQGPVPA 197
Query: 204 LRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDR 263
+ RV G L +E+ T+ ++ A + R V +A+I +
Sbjct: 198 IERVVALGRG---DLIDELGATLTDIRSGTVLSTALDRMERRVGSVHVTRLCEAIIVALE 254
Query: 264 YGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAI 319
GT + D LR ++ R + ++ VP++ LP+ ++ + P +
Sbjct: 255 RGTPLADVLRSQATDVREAARQDLMEEGGRREIAQMVPVVFLVLPITVVFALFPGL 310
>gi|307320430|ref|ZP_07599847.1| Type II secretion system F domain protein [Sinorhizobium meliloti
AK83]
gi|306893996|gb|EFN24765.1| Type II secretion system F domain protein [Sinorhizobium meliloti
AK83]
Length = 336
Score = 111 bits (279), Expect = 1e-22, Method: Composition-based stats.
Identities = 56/288 (19%), Positives = 117/288 (40%), Gaps = 19/288 (6%)
Query: 40 ELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIV 99
+ E R++ V+ E R + + + + S+ R SL+ KK K+ ++
Sbjct: 36 KAEGRLRRVSA-SETDRTKIKAARDRVNEMSKRRKSVQDSLKELEKKQQEKSANTAPSMK 94
Query: 100 NKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYV 159
+L AG SL + + + ++ ++ G L V LIG
Sbjct: 95 KRLLQAGLS--ISLAQFYLFSALFGLFAFLVVLLAGAGL---------LIAAGVALIGAA 143
Query: 160 GFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLS 219
G P + ++V++R +P++LD+++ ++SG+ ++ ALR +A D P+
Sbjct: 144 G--LPRWIVGSMVKRRCRKFLDEFPNSLDVMVRSIKSGLPLNDALRLIASDGQE---PVR 198
Query: 220 EEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSET 279
E + N A + + V + + G ++ ++L L
Sbjct: 199 TEFRRVVESQQVGLNVPEACARMIHSIPLPEVNFFAIVIAIQAQAGGNLSEALGNLSKVL 258
Query: 280 RSERLMEAEKKAASLGPKLTVPMI--IFFLPVLILVIIGPAILSIIDT 325
R R M+A+ A S+ K + +I + F+ ++ + P + ++ T
Sbjct: 259 RERRKMKAKVGALSMEAKASACIIGALPFIVATLVYLTSPDYMMVLFT 306
>gi|313835699|gb|EFS73413.1| type II secretion system F domain protein [Propionibacterium acnes
HL037PA2]
gi|314928370|gb|EFS92201.1| type II secretion system F domain protein [Propionibacterium acnes
HL044PA1]
gi|314970222|gb|EFT14320.1| type II secretion system F domain protein [Propionibacterium acnes
HL037PA3]
gi|328908049|gb|EGG27808.1| LOW QUALITY PROTEIN: Type II secretion system F domain protein
[Propionibacterium sp. P08]
Length = 301
Score = 111 bits (279), Expect = 1e-22, Method: Composition-based stats.
Identities = 48/211 (22%), Positives = 97/211 (45%), Gaps = 13/211 (6%)
Query: 98 IVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIG 157
I ++ AAG +++ +L L +I + L + + Q +L
Sbjct: 79 IQKQVNAAGRPDGMTVDTVLADMLKWAVIVVPLAVFVL----------VQGMAFIALLAL 128
Query: 158 YVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVP 217
++ P ++ V++R+ I + P +D+L + V +GI +ALR V+E GG P
Sbjct: 129 FIPPVIPLGKLTGDVKRRKEQIDQDLPSFMDVLAVTVTAGIGFRRALRTVSERYGG---P 185
Query: 218 LSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVS 277
L++E+ LT+ + + + AF +RT V A +QS+ G + D+L + +
Sbjct: 186 LADEIQLTLQHVDNGASMRQAFTALRDRTGSAAVDEFVSAYVQSEELGAPLVDTLNHIAA 245
Query: 278 ETRSERLMEAEKKAASLGPKLTVPMIIFFLP 308
+ R A ++A+ + P++++ +P
Sbjct: 246 DMRRSSAQAALQRASRIEPRVSLVTTTVMVP 276
>gi|298345274|ref|YP_003717961.1| type II secretion system protein [Mobiluncus curtisii ATCC 43063]
gi|298235335|gb|ADI66467.1| type II secretion system protein [Mobiluncus curtisii ATCC 43063]
Length = 303
Score = 111 bits (279), Expect = 1e-22, Method: Composition-based stats.
Identities = 38/227 (16%), Positives = 94/227 (41%), Gaps = 5/227 (2%)
Query: 96 ENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVIL 155
E++ +L AG + +R + L + + I + + L P + +
Sbjct: 80 ESVERRLELAGLPKDVCEFRRSQLRWATFLGVLAVVLSIIGFWGRTLPIPGAFVMLTCFV 139
Query: 156 IGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQS 215
+ G P ++ ++RQ S+ + PD ++LL + V +G + AL RV+ +
Sbjct: 140 LA--GLLVPDYRLTGAARRRQLSLNQELPDVIELLALAVGAGEPLYGALHRVSARCTDVA 197
Query: 216 VPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVL 275
+E+ +A + + R + + + A++ + G+ + LR
Sbjct: 198 ---GQELEKILAAADNGDSLAPSLTAARARNDSEILAHLIDAIVSALERGSPLAGVLRSQ 254
Query: 276 VSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
V+++R+ + + + VP++ LP+ ++ + P ++++
Sbjct: 255 VADSRAVARTQLLTEGGKKEVLMMVPVVFLILPLTVVFALYPGLVAL 301
>gi|311743760|ref|ZP_07717566.1| type II secretion system protein [Aeromicrobium marinum DSM 15272]
gi|311312890|gb|EFQ82801.1| type II secretion system protein [Aeromicrobium marinum DSM 15272]
Length = 303
Score = 111 bits (279), Expect = 1e-22, Method: Composition-based stats.
Identities = 51/300 (17%), Positives = 107/300 (35%), Gaps = 6/300 (2%)
Query: 23 SIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRN 82
++ L++ + + +G + R S+ + L +R L +
Sbjct: 4 AVLGLLWGAGLCLVAAGWVRSRRPSLHDRVAPYVRDVHPVLAAGPPVGAVRAVFGPGLTS 63
Query: 83 FVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLL 142
+L + + E++ +L A +L+ +LV L
Sbjct: 64 VASRLG-ELVGSSESVQRRLDRA--SGGGTLDEFRFRQLVWTAGTLAAAGSLSGLVWWER 120
Query: 143 EYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQ 202
+ ++ G +S V++R+ ++ +P DLL + V +G S
Sbjct: 121 RSGAVALLAFSLIAAIGGALVCDQRLSAEVRRREQAMTEEFPAVADLLALAVAAGESPTA 180
Query: 203 ALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSD 262
AL+RV G L++E+ +AE+ AF+ RT + + + L +
Sbjct: 181 ALQRVVARAHG---ELADELGRVLAEVRTGSTIVQAFDRLAARTGVTSIARFAEGLAVAV 237
Query: 263 RYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
GT + D L ++ R + + VP++ LPV ++ P ++ +
Sbjct: 238 DRGTPVVDVLHAQTADVREAARRHLMETGGRREVLMMVPVVFAILPVTVVFAFYPGLVGL 297
>gi|261409010|ref|YP_003245251.1| Type II secretion system F domain-containing protein [Paenibacillus
sp. Y412MC10]
gi|261285473|gb|ACX67444.1| Type II secretion system F domain protein [Paenibacillus sp.
Y412MC10]
Length = 290
Score = 111 bits (278), Expect = 1e-22, Method: Composition-based stats.
Identities = 46/224 (20%), Positives = 92/224 (41%), Gaps = 9/224 (4%)
Query: 107 FRSEYSLNILLVVR----LVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFC 162
+R + S+ + +R + + + L W+ L V ++ +G
Sbjct: 66 YRMQGSVQKIHGLRHSAEMTLLFMAEALAYTWLILIGGCLWSLLSGEVIGLLAGFGLGAL 125
Query: 163 APSVWISNLVQK---RQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLS 219
P + +L +K R+ I P+ L+ +++ V +G ++ +A+ E S PL
Sbjct: 126 LPVALVKDLHKKVTLREQDIVMELPELLNKIVLLVGAGETVQRAIIHCVERNEDASHPLY 185
Query: 220 EEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTS-IGDSLRVLVSE 278
E+ + E Q AFE F R + V T ++ + R G + +LR L
Sbjct: 186 AELKRMVLEWEGGHPFQQAFEQFNKRCGVQEVSIFTTTVLLNFRRGGNDFVLALRDLSRV 245
Query: 279 TRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
+R A + KL +PM++ ++I+++ PA + +
Sbjct: 246 LWEKRKAIARTRGEQASSKLVLPMVV-IFMIVIVLLGAPAFMMM 288
>gi|326388861|ref|ZP_08210443.1| type II secretion system protein [Novosphingobium nitrogenifigens
DSM 19370]
gi|326206461|gb|EGD57296.1| type II secretion system protein [Novosphingobium nitrogenifigens
DSM 19370]
Length = 323
Score = 111 bits (278), Expect = 2e-22, Method: Composition-based stats.
Identities = 58/298 (19%), Positives = 114/298 (38%), Gaps = 24/298 (8%)
Query: 18 ITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDS 77
I A+ + +A + +G + + R K + + D ++ R +
Sbjct: 7 ILMAIGLTVAAWAGITLFMGPNPARE-----SSRRLQAVKLRHSESTTDKVEAQYRKALA 61
Query: 78 KSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFG 137
K + L E + +L G ++++ L + ++ L G +WI
Sbjct: 62 ARKPKAYKLAGSSSRL--EALSLRLDRTG--RGWTISQYLYA--SLGLVILFGGFVWIKS 115
Query: 138 YDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESG 197
+L + +GA P +S + KR ++ +PDAL+LL+ + SG
Sbjct: 116 GSLVLGLALGIAIGAG---------LPHFAVSWAINKRINNFITRFPDALELLVRGLRSG 166
Query: 198 ISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQA 257
+ I + L VA ++ G P+SEE + + + A + +R +
Sbjct: 167 LPISETLVVVANELPG---PVSEEFKIVTDRIRLGRTMEDALQETADRLDLAEFSFFCIT 223
Query: 258 LIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVII 315
L G ++ ++L L R M+ + KA S K + I+ LP ++ +I
Sbjct: 224 LAIQRETGGNLAETLANLADVLRKRAQMKLKIKAMSSESKASA-YIVGSLPFIVFALI 280
>gi|238793626|ref|ZP_04637249.1| Type II secretion system protein [Yersinia intermedia ATCC 29909]
gi|238727041|gb|EEQ18572.1| Type II secretion system protein [Yersinia intermedia ATCC 29909]
Length = 194
Score = 111 bits (278), Expect = 2e-22, Method: Composition-based stats.
Identities = 37/162 (22%), Positives = 70/162 (43%), Gaps = 5/162 (3%)
Query: 140 KLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGIS 199
++ + + + P I N++ K+ + + P +D+ CV+SG++
Sbjct: 23 SIIAANSMNLLMIGLFMLITTIYLPKFIIRNILNKKIKCLLNSLPFFIDITAACVQSGMT 82
Query: 200 IDQALRRVAEDIGGQSVPLSEEMLLTI--AELSFLPNRQVAFENFYNRTQMDCVRNATQA 257
ID AL A+ + LS + AE++ L + F+ T ++ A
Sbjct: 83 IDSALSYTAKKFILINPDLSLIVTKITKRAEINGLESAIKEFQQLSTET---EIKMFCSA 139
Query: 258 LIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLT 299
L S +G+++ D L L + R +L+ E+K + L KLT
Sbjct: 140 LQYSISFGSTVYDQLIKLAQDMREMQLLVTEEKNSKLSTKLT 181
>gi|192292570|ref|YP_001993175.1| type II secretion system protein [Rhodopseudomonas palustris TIE-1]
gi|192286319|gb|ACF02700.1| type II secretion system protein [Rhodopseudomonas palustris TIE-1]
Length = 324
Score = 111 bits (278), Expect = 2e-22, Method: Composition-based stats.
Identities = 59/316 (18%), Positives = 122/316 (38%), Gaps = 29/316 (9%)
Query: 13 ELAVAITTAVSIFSLIYAVVIPSL-GSGELEKRMKSVAVEREILRKQQITSLQKDSASSR 71
LA+ A+++ + + V P L G +E+R+ VA +R+ T +
Sbjct: 5 TLALGFFAAIAVGGVAWVFVYPLLSGEKTVEQRLTFVARSTPTVRQADRTQRSR------ 58
Query: 72 LRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILG 131
R + SL+ + + + + KL AG +++ VV + I L +
Sbjct: 59 -REQIEGSLKEIETRNEKQKNVP---LTAKLSQAGL--DWTPGKFGVVSASLGIFMLGIA 112
Query: 132 IIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLL 191
II F G P + L ++R+ A PDA+D+++
Sbjct: 113 IILGASLPAAAGLGFAAGFGL-----------PRWTLGYLKRRREKRFLAALPDAVDIIV 161
Query: 192 ICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCV 251
+++G+ + +++ VA D PL E I + A Y R +
Sbjct: 162 RGIKAGLPLFDSIKMVAAD---SPEPLRSEFNAIIETQAIGMPIGEACARLYERMPIPEA 218
Query: 252 RNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMI--IFFLPV 309
+ + G ++ ++L L R + M + +A S+ K + +I + + +
Sbjct: 219 NFFGIVISIQQKSGGNLSEALGNLSKVLRDRKKMAEKIQAMSMEAKASAAIIGSLPIIVM 278
Query: 310 LILVIIGPAILSIIDT 325
+++ + P +S++ T
Sbjct: 279 MLVYVTTPDYISLLWT 294
>gi|39936744|ref|NP_949020.1| type II secretion system protein [Rhodopseudomonas palustris
CGA009]
gi|39650600|emb|CAE29123.1| conserved unknown protein [Rhodopseudomonas palustris CGA009]
Length = 324
Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats.
Identities = 58/316 (18%), Positives = 122/316 (38%), Gaps = 29/316 (9%)
Query: 13 ELAVAITTAVSIFSLIYAVVIPSL-GSGELEKRMKSVAVEREILRKQQITSLQKDSASSR 71
LA+ A+++ + + V P L G +E+R+ VA +R+ T +
Sbjct: 5 TLALGFFAAIAVGGVAWVFVYPLLSGEKTVEQRLTFVARSTPTVRQADRTQRSR------ 58
Query: 72 LRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILG 131
R + S++ + + + + KL AG +++ VV + I L +
Sbjct: 59 -REQIEGSIKEIETRNEKQKNVP---LTAKLSQAGL--DWTPGKFGVVSASLGIFMLGIA 112
Query: 132 IIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLL 191
II F G P + L ++R+ A PDA+D+++
Sbjct: 113 IILGASLPAAAGLGFAAGFGL-----------PRWTLGYLKRRREKKFLAALPDAVDIIV 161
Query: 192 ICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCV 251
+++G+ + +++ VA D PL E I + A Y R +
Sbjct: 162 RGIKAGLPLFDSIKMVAAD---SPEPLRSEFNAIIETQAIGMPIGEACARLYERMPIPEA 218
Query: 252 RNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMI--IFFLPV 309
+ + G ++ ++L L R + M + +A S+ K + +I + + +
Sbjct: 219 NFFGIVISIQQKSGGNLSEALGNLSKVLRDRKKMAEKIQAMSMEAKASAAIIGSLPIIVM 278
Query: 310 LILVIIGPAILSIIDT 325
+++ + P +S++ T
Sbjct: 279 MLVYVTTPDYISLLWT 294
>gi|331002544|ref|ZP_08326061.1| hypothetical protein HMPREF0491_00923 [Lachnospiraceae oral taxon
107 str. F0167]
gi|330409147|gb|EGG88603.1| hypothetical protein HMPREF0491_00923 [Lachnospiraceae oral taxon
107 str. F0167]
Length = 284
Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats.
Identities = 47/225 (20%), Positives = 100/225 (44%), Gaps = 8/225 (3%)
Query: 99 VNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGY 158
KL + + +Y ++R ++L ++ L ++L + + + G
Sbjct: 65 KIKLISEIYGKQYGPYYFYILRGGQITFAIVLSVLMFLITG--LSGNYKLVIAGLTVGGM 122
Query: 159 VGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPL 218
+ + +++ + R+ + R +P L L + V +G+ I +A RVA+D G L
Sbjct: 123 MVWYLDE-VLNDKINSRRDELLRDYPGMLSKLTLLVNAGVPIREAWVRVADDNEGL---L 178
Query: 219 SEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTS-IGDSLRVLVS 277
+EM T ELS ++ F R + ++ + +IQ+ + G++ + L+ + +
Sbjct: 179 YQEMRNTAMELSNGIQEIEVYKAFGERCSIKSLKKFSTMMIQNLQKGSNEVVIFLKDMSN 238
Query: 278 ETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
E E+ E ++K KL +P I ++++II P S+
Sbjct: 239 EAWEEKKHEVKRKGEKASSKLIMP-IGLIFLGVMILIIVPMFASL 282
>gi|254451819|ref|ZP_05065256.1| type II/IV secretion system protein, TadC subfamily [Octadecabacter
antarcticus 238]
gi|198266225|gb|EDY90495.1| type II/IV secretion system protein, TadC subfamily [Octadecabacter
antarcticus 238]
Length = 122
Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats.
Identities = 36/122 (29%), Positives = 63/122 (51%)
Query: 204 LRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDR 263
+ RVA+++ + +SEE L+ AE+ +R+ A + R ++ V + + QS
Sbjct: 1 MTRVAQNLSMVNPAISEEFLMCQAEILAGRHREQALVDMAERIGVEEVNSFVALISQSME 60
Query: 264 YGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSII 323
YGTSI S+ E R R ++A++KA L +++ M LP L L+ +GP I+ +
Sbjct: 61 YGTSISASMNAYAIEMRDAREIKAQEKANKLPVQMSGVMASMMLPALFLITLGPTIIRYM 120
Query: 324 DT 325
Sbjct: 121 RM 122
>gi|225572862|ref|ZP_03781617.1| hypothetical protein RUMHYD_01053 [Blautia hydrogenotrophica DSM
10507]
gi|225039788|gb|EEG50034.1| hypothetical protein RUMHYD_01053 [Blautia hydrogenotrophica DSM
10507]
Length = 337
Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats.
Identities = 42/184 (22%), Positives = 82/184 (44%), Gaps = 5/184 (2%)
Query: 143 EYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQ 202
+Y + V N +KR+ + +P + + +++G+S+
Sbjct: 152 DYTGTFMSSMCLGAAAVLLVFREREKENSRKKREEELIMDYPGLVTKFTLLIQAGMSVRG 211
Query: 203 ALRRVAEDIGGQS---VPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALI 259
A ++++ED ++ P EE+ T E+ +++ A++NF R + + L+
Sbjct: 212 AFQKISEDCETKTKDRRPGYEEVRRTCIEMDSGVSQKEAYQNFGQRCAQAKYKTFSTLLV 271
Query: 260 QSDRYGT-SIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPA 318
Q+ R G ++ D L +E ER A + KL VPMI+ L V++ +++ PA
Sbjct: 272 QNLRSGNRNLVDMLERESTEAWEERKRRARIHGETAATKLLVPMIL-MLGVVLALLMIPA 330
Query: 319 ILSI 322
LS
Sbjct: 331 CLSF 334
>gi|20094143|ref|NP_613990.1| hypothetical protein MK0706 [Methanopyrus kandleri AV19]
gi|19887150|gb|AAM01920.1| Predicted membrane protein [Methanopyrus kandleri AV19]
Length = 362
Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats.
Identities = 52/217 (23%), Positives = 94/217 (43%), Gaps = 14/217 (6%)
Query: 102 LRAAGFR-SEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVG 160
L+ AG R S + + II ++G++ L P L+V I+ +G
Sbjct: 114 LQKAGLRISPAAFATFM-------IISGLMGVVLTSVPAALFPLPLPLKVLGPIMSFLLG 166
Query: 161 FCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSE 220
P + ++ L+++R+ I R P A+ + V +G+S+ ++++ ++E LSE
Sbjct: 167 MVVPRMMVTILIRRREGEIARQLPYAIRQMATEVSAGLSLIESMKSISE---SDYGALSE 223
Query: 221 EMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETR 280
E I E++ VA + NR +D +R + + Q+ G +I +L L E
Sbjct: 224 EFERVIREINSGTPINVALQRMANRWNVDGLRTMVRFITQAMESGANIAKTLMTLADEIA 283
Query: 281 SERLMEAEKKAASLGPKLTVPMIIFFL--PVLILVII 315
E + L L P I+ L P L+ V +
Sbjct: 284 HELRQRYREYGHKLQA-LAFPYIMLTLVIPTLVTVAM 319
>gi|326771892|ref|ZP_08231177.1| type II secretion system protein F domain-containing protein
[Actinomyces viscosus C505]
gi|326638025|gb|EGE38926.1| type II secretion system protein F domain-containing protein
[Actinomyces viscosus C505]
Length = 317
Score = 110 bits (276), Expect = 3e-22, Method: Composition-based stats.
Identities = 41/236 (17%), Positives = 90/236 (38%), Gaps = 5/236 (2%)
Query: 84 VKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLE 143
+ +L +++ +L +G S ++ + +++ L+L +
Sbjct: 80 LGRLMDTLGSSADSVRRRLTRSG--SSLGVDQFRLQQVLWSTTALLLVLTAGGLAALARS 137
Query: 144 YPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQA 203
+ ++ G A W+S V KR S I+ PD ++LL + V +G A
Sbjct: 138 VNVPALILLCLMGTVAGAAARDWWLSRAVAKRLSRIEAQLPDVVELLALAVGAGQGPVPA 197
Query: 204 LRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDR 263
+ R+ L +E+ T+ ++ A + R V +A+I +
Sbjct: 198 IERIV---ALGRGDLVDELSSTLTDIRSGTVLSTALDRMERRVGSVHVTRLCEAIIVALE 254
Query: 264 YGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAI 319
GT + + LR ++ R + ++ VP++ LP+ ++ + P +
Sbjct: 255 RGTPLAEVLRSQATDVREAARQDLMEEGGRREIAQMVPVVFLVLPITVVFALFPGL 310
>gi|119715490|ref|YP_922455.1| type II secretion system protein [Nocardioides sp. JS614]
gi|119536151|gb|ABL80768.1| type II secretion system protein [Nocardioides sp. JS614]
Length = 312
Score = 110 bits (276), Expect = 3e-22, Method: Composition-based stats.
Identities = 44/226 (19%), Positives = 93/226 (41%), Gaps = 5/226 (2%)
Query: 97 NIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILI 156
++ +L+ AG + +++ + +++ ++ + W + A +
Sbjct: 87 SVRRRLQRAGL--DKTVHEFRIEQVLWGVVGFAVAAAWGVLRMLTQPGAAVSSLLACAVA 144
Query: 157 GYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSV 216
VG A ++++ V+ R+ I +P +LL + V +G AL RV GG
Sbjct: 145 FIVGVLARDTYLTSQVRARERRILAEFPTVAELLALAVAAGEGPVAALDRVVRRSGG--- 201
Query: 217 PLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLV 276
LS ++ +AE+ AF+ + + + V Q + + GT + D L
Sbjct: 202 ELSADLARVLAEIRTGEPVATAFDAMASASGLPLVARFAQGIAVAVERGTPLADVLHAQA 261
Query: 277 SETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
++ R E + AA + VP++ LP+ +L P ++ +
Sbjct: 262 ADVREAGRRELIEAAARKEVFMMVPVVFLVLPITVLFAFWPGVVGL 307
>gi|90425201|ref|YP_533571.1| type II secretion system protein [Rhodopseudomonas palustris
BisB18]
gi|90107215|gb|ABD89252.1| type II secretion system protein [Rhodopseudomonas palustris
BisB18]
Length = 324
Score = 110 bits (275), Expect = 3e-22, Method: Composition-based stats.
Identities = 61/317 (19%), Positives = 130/317 (41%), Gaps = 31/317 (9%)
Query: 13 ELAVAITTAVSIFSLIYAVVIPSLGS-GELEKRMKSVAVEREILRKQQITSLQKDSASSR 71
LA+A +A+++ L + + PSL E+R S+A ++R+ T +
Sbjct: 5 TLAIAFLSAMAVGGLAWVFIYPSLSGQKTAEQRRASLARPEPVVRQIDRTQRSR------ 58
Query: 72 LRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILG 131
R + SL+ + + + + +L AG +++ L+ V+ + +
Sbjct: 59 -REQVEGSLKEVEARHRKEKKVA---LTTRLTQAGV--KWTPKGFLIGSAVLGVTMFAIT 112
Query: 132 IIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLL 191
+ G L F G P ++ L ++R+ + +A PDA+D+++
Sbjct: 113 SLLGGGLLAALALGFAAGFGL-----------PRWALNFLKKRREKNFLKALPDAVDVIV 161
Query: 192 ICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCV 251
+++G+ + +L+ VA D PL E L + + A Y R +
Sbjct: 162 RGIKAGLPLFDSLKVVAAD---APEPLKSEFLAILETQAIGMPLGEACARLYERMPLPEA 218
Query: 252 RNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLI 311
+ + G ++ ++L L R + M + +A S+ K + II LP ++
Sbjct: 219 NFFGIVIAIQQKSGGNLSEALGNLSKVLRDRKRMAEKIQAMSMEAKASAG-IIGSLPPIV 277
Query: 312 LVIIG---PAILSIIDT 325
++++ P +S++ T
Sbjct: 278 MLLVYLSTPDYISLLWT 294
>gi|315606116|ref|ZP_07881147.1| conserved hypothetical protein [Actinomyces sp. oral taxon 180 str.
F0310]
gi|315312398|gb|EFU60484.1| conserved hypothetical protein [Actinomyces sp. oral taxon 180 str.
F0310]
Length = 298
Score = 110 bits (275), Expect = 3e-22, Method: Composition-based stats.
Identities = 50/269 (18%), Positives = 100/269 (37%), Gaps = 6/269 (2%)
Query: 55 LRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLN 114
R +T + + S + +R E++ +L AG + +
Sbjct: 31 RRPSFVTRVAQGRVSDTRPSALGAWIRRCCSTALESMGSTSESVARRLSLAGMNMD--VP 88
Query: 115 ILLVVRLVVPIIFLILGIIWIFGYDKL-LEYPFQLRVGAVILIGYVGFCAPSVWISNLVQ 173
+ + + + I+ L+L + L ++ + A +S +
Sbjct: 89 VFRLRQALAAIVGLVLSCALLTLRSAASLRSSLVSLCACALVAALLAVTAMDRALSIKAR 148
Query: 174 KRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLP 233
+RQ +I A PD +LL + V +G SI A+ RVA G PL E+ LT A +
Sbjct: 149 RRQRAIDAAVPDCAELLALAVAAGESIPAAIERVA---GCAGGPLGSELALTSAHIRNGT 205
Query: 234 NRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAAS 293
A RT + ++ L + G+ + L + R L ++
Sbjct: 206 PSVRALAELVERTDSPSLTRLSRTLTTAIERGSPLASVLHDQARDQRERSLASLMEEGGR 265
Query: 294 LGPKLTVPMIIFFLPVLILVIIGPAILSI 322
+ +P++ LPV ++ + P ++++
Sbjct: 266 REIAMLLPVVFLILPVTVMFALYPGLIAL 294
>gi|167648148|ref|YP_001685811.1| type II secretion system protein [Caulobacter sp. K31]
gi|167350578|gb|ABZ73313.1| type II secretion system protein [Caulobacter sp. K31]
Length = 325
Score = 110 bits (275), Expect = 3e-22, Method: Composition-based stats.
Identities = 58/314 (18%), Positives = 127/314 (40%), Gaps = 24/314 (7%)
Query: 14 LAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLR 73
+ + ++I L + + GS + KR + +A + + + R
Sbjct: 4 IIAGVLGFITIAGLGFVLAGGDGGSAKTVKRAQLIAGGDRQAVAARAKAAANSPDARR-- 61
Query: 74 TRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGII 133
K + +K+ + + +I +LRAAG + + N ++ +I L G I
Sbjct: 62 ----KQILKTLKEQDQQKKKASLSIAARLRAAGL-GDNTRNFW----IISGVIGLTAGAI 112
Query: 134 WIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLIC 193
+ Q+ + A+ GF P + + + R A+ DA+D+++
Sbjct: 113 LLLLR--------QMPLIALGAAFGAGFGLPRWVVGMMAKARTKKFTEAFSDAIDIIVRG 164
Query: 194 VESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRN 253
++SG+ ++ L+ + ++ PL+ E + + + A E Y R + +R
Sbjct: 165 IKSGLPVNDCLKIIGKEC---PEPLAGEFRVLVENTGMGMSMDQALERMYERMPTNELRF 221
Query: 254 ATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILV 313
T L + G ++ ++L L + R+ +LM + KA S + +I P ++++
Sbjct: 222 FTIVLTIQAKTGGNLAEALGNLSTVLRARKLMGEKIKALSAEAVASAFIIGALPPGVVIL 281
Query: 314 I--IGPAILSIIDT 325
I P ++ + T
Sbjct: 282 ISVTAPTYMAPMFT 295
>gi|316933035|ref|YP_004108017.1| Type II secretion system F domain [Rhodopseudomonas palustris DX-1]
gi|315600749|gb|ADU43284.1| Type II secretion system F domain [Rhodopseudomonas palustris DX-1]
Length = 324
Score = 109 bits (274), Expect = 4e-22, Method: Composition-based stats.
Identities = 61/317 (19%), Positives = 127/317 (40%), Gaps = 31/317 (9%)
Query: 13 ELAVAITTAVSIFSLIYAVVIPSLGSGE-LEKRMKSVAVEREILRKQQITSLQKDSASSR 71
LA+ AV++ + + + P L + +EKR+ SVA +R+ T +
Sbjct: 5 TLALGFFAAVAVGGVAWVFIYPLLSGEKNVEKRLTSVARTTPAVRQVDRTQRSR------ 58
Query: 72 LRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILG 131
R + SL+ + + + + +L AG +++ VV + ++ L +
Sbjct: 59 -REQIEGSLKEIETRSQKQKNVP---LGMRLSQAGL--DWTPAKFGVVSAAIGVVVLGIA 112
Query: 132 IIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLL 191
I+ G F G P + L ++R+ A PDA+D+++
Sbjct: 113 IMIGTGLVAAAGLGFAAGFGL-----------PRWTLGFLKRRREKKFLAALPDAVDVIV 161
Query: 192 ICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCV 251
+++G+ + +++ VA D PL E I + A Y R +
Sbjct: 162 RGIKAGLPLFDSIKVVAAD---APEPLRSEFNAIIETQAIGMPLADACARLYERMPLPEA 218
Query: 252 RNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLI 311
+ + G ++ ++L L R + M + +A S+ K + II LP+++
Sbjct: 219 NFFGIVIAIQQKSGGNLSEALSNLSKVLRDRKKMAEKIQAMSMEAKASA-TIIGALPLIV 277
Query: 312 LVIIG---PAILSIIDT 325
++++ P +S++ T
Sbjct: 278 MLLVYLTTPDYISLLWT 294
>gi|260461945|ref|ZP_05810190.1| type II secretion system protein [Mesorhizobium opportunistum
WSM2075]
gi|259032192|gb|EEW33458.1| type II secretion system protein [Mesorhizobium opportunistum
WSM2075]
Length = 337
Score = 109 bits (274), Expect = 4e-22, Method: Composition-based stats.
Identities = 54/316 (17%), Positives = 125/316 (39%), Gaps = 21/316 (6%)
Query: 9 FDATELAVAITTAVSIFSLIYAVVIPSLGSGELE-KRMKSVAVEREILRKQQITSLQKDS 67
D T LA + S ++ YA + + + KR++++ E R + + +
Sbjct: 4 IDGTVLAFVVLAGFSAGAVAYAFLFNQISNERQTGKRLETIKAA-ETDRSVVKATRDRAT 62
Query: 68 ASSRLRTRDSKSLRNFVKKLNLK-AILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPII 126
+++ R SL+ +K K + + + +LR AG + + + + I
Sbjct: 63 DAAKRRKSVQDSLKELDEKQKSKDSAIKKPPLKAQLRQAGM--KVPIERFYIYSAICGIA 120
Query: 127 FLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDA 186
++ + + + V+L G +G P ++S +R + +P+A
Sbjct: 121 LTVIAFVA---------GAPLIVLPGVLLAGALG--LPRWFVSFRRSRRVKAFLNEFPNA 169
Query: 187 LDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRT 246
LD+++ V+SG+ ++ A+R +A + P+ E + + A
Sbjct: 170 LDIIVRAVKSGLPLNDAVRLIANE---APEPVKTEFRRIVDSQQMGLSIPDATLRMPETM 226
Query: 247 QMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMI--I 304
+ + G ++ ++L L R + M+A+ +A S+ K + +I +
Sbjct: 227 PCTEASFFGIVIQIQSQAGGNLSEALGNLSRVLRDRKKMKAKVQALSMEAKASAAIIGAL 286
Query: 305 FFLPVLILVIIGPAIL 320
F+ ++ + P+ L
Sbjct: 287 PFIVAFLVYLSSPSYL 302
>gi|254483289|ref|ZP_05096521.1| Bacterial type II secretion system protein F domain [marine gamma
proteobacterium HTCC2148]
gi|214036512|gb|EEB77187.1| Bacterial type II secretion system protein F domain [marine gamma
proteobacterium HTCC2148]
Length = 296
Score = 109 bits (274), Expect = 4e-22, Method: Composition-based stats.
Identities = 55/299 (18%), Positives = 111/299 (37%), Gaps = 23/299 (7%)
Query: 9 FDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSA 68
+ T L + ++ + + I L++R E+ ++ + + ++
Sbjct: 1 MNQTLLIAQVAAFIATSCTV--LFIGFSIRDALKRR------EQLWIKIRASHVSKAEAG 52
Query: 69 SSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFL 128
+ +RT +++R L L AG + + + +
Sbjct: 53 AEFVRTVLLETVRPMSSVQKL-----LRQTQKNLLRAG-VGRNAEDY-----VADGLWQG 101
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
+LG I I LL P + + + +R I R P ALD
Sbjct: 102 LLGGISIMLAVSLLSSPVSGLLLGTAGGVLWAMWIKPSMLDSNATQRSRLIYRRIPYALD 161
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
L ++ +E+G ++ + L E+I Q+ PL+EE+ +T+ E+ + A R +
Sbjct: 162 LSVLVLETGGTLREGL----EEISLQNDPLAEELRITLLEMDSGSTQAAALRGMGQRVGL 217
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFL 307
+ + A+ + + G + +L R RL E EK A K+T P ++ +
Sbjct: 218 ESLETILTAINRGEETGAPMVATLITQAEMFRERRLQEIEKMAVEAPTKMTFPNMMIMV 276
>gi|323137429|ref|ZP_08072507.1| Type II secretion system F domain [Methylocystis sp. ATCC 49242]
gi|322397416|gb|EFX99939.1| Type II secretion system F domain [Methylocystis sp. ATCC 49242]
Length = 326
Score = 109 bits (274), Expect = 5e-22, Method: Composition-based stats.
Identities = 57/305 (18%), Positives = 118/305 (38%), Gaps = 30/305 (9%)
Query: 26 SLIYAVVIPSLGSG-ELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFV 84
++YA V P L + +KR ++ R + ++ K + N
Sbjct: 17 GVMYAFVYPYLSGEIKAQKRTAALTSGRSERGAVAGRGTVDPAKRRKMIAESLKEVENQN 76
Query: 85 KKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEY 144
KK L + ++ AG ++ + L+ + F +L ++ +
Sbjct: 77 KKKKL-------TLEQRIMQAGL--TWTPQVF----LIGSVAFGLLVAFFLLVVNG---- 119
Query: 145 PFQLRVGAVILIGYVG-FCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQA 203
+ VI VG F P+ +S L ++R S +P ++D+++ V++G+ +
Sbjct: 120 ----DIMVVIGGAAVGIFGLPNWLLSFLRKRRISKFIEEFPGSIDVIIRGVKAGLPVADC 175
Query: 204 LRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDR 263
R +A + P+ E I + + A E F R + + + +
Sbjct: 176 FRVIASEGQE---PVRGEFRRIIESQAIGLSVGEAVERFAERVPVPEASFFSIVINIQQK 232
Query: 264 YGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLI---LVIIGPAIL 320
G ++ ++L L R + M+ + KA S K + II LP L+ + + P+ +
Sbjct: 233 SGGNLSEALGNLSRVLRDRKKMKGKVKAMSSEAKASAG-IIGSLPFLVGGAVYLTTPSYM 291
Query: 321 SIIDT 325
++ T
Sbjct: 292 MVLFT 296
>gi|329928959|ref|ZP_08282769.1| type II secretion system protein F domain protein [Paenibacillus
sp. HGF5]
gi|328937211|gb|EGG33638.1| type II secretion system protein F domain protein [Paenibacillus
sp. HGF5]
Length = 290
Score = 109 bits (274), Expect = 5e-22, Method: Composition-based stats.
Identities = 45/224 (20%), Positives = 91/224 (40%), Gaps = 9/224 (4%)
Query: 107 FRSEYSLNILLVVR----LVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFC 162
+R + S+ + +R + + + L W+ L V ++ +G
Sbjct: 66 YRMQGSVQKIHGLRHSAEMTLLFMAEALAYTWLILIGGCLWSLLSGDVIGLLAGFALGAL 125
Query: 163 APSVWISNLVQK---RQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLS 219
P + +L +K R+ I P+ L+ +++ V +G ++ +A+ E S PL
Sbjct: 126 LPVALVKDLHKKVTLREQDIVMELPELLNKIVLLVGAGETVQRAIIHCVERNKDTSHPLY 185
Query: 220 EEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTS-IGDSLRVLVSE 278
E+ + E Q AFE F R + V T ++ + R G + +LR L
Sbjct: 186 AELKRMVLEWEGGHPFQQAFEQFNKRCGVQEVSIFTTTVLLNFRRGGNDFVLALRDLSRV 245
Query: 279 TRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
+R + KL +PM++ ++I+++ PA + +
Sbjct: 246 LWEKRKAITRTRGEQASSKLVLPMVV-IFMIVIVLLGAPAFMMM 288
>gi|315649137|ref|ZP_07902228.1| Type II secretion system F domain protein [Paenibacillus vortex
V453]
gi|315275453|gb|EFU38810.1| Type II secretion system F domain protein [Paenibacillus vortex
V453]
Length = 290
Score = 109 bits (273), Expect = 6e-22, Method: Composition-based stats.
Identities = 45/224 (20%), Positives = 91/224 (40%), Gaps = 9/224 (4%)
Query: 107 FRSEYSLNILLVVR----LVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFC 162
+R + S+ + +R L + + L W+ + V +I +G
Sbjct: 66 YRMQGSVQKIYGLRHSAELTLLFMAEALAYTWLIWIGGCIWALLSGEVMGLIAGLGLGAL 125
Query: 163 APSVWISNLVQK---RQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLS 219
P + +L +K R+ I P+ L+ +++ V +G ++ +A+ E + PL
Sbjct: 126 LPVALVKDLHKKVMLREQEIIMELPELLNKIVLLVGAGETVQRAVIHCVERNKDMNHPLY 185
Query: 220 EEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTS-IGDSLRVLVSE 278
E+ + E Q AFE F R + V T ++ + R G + +LR L
Sbjct: 186 AELKRMVLEWEGGHPFQQAFEQFNKRCGVQEVSIFTTTVLLNFRRGGNDFVMALRDLSRV 245
Query: 279 TRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
+R + KL +PM++ ++I+++ PA + +
Sbjct: 246 LWEKRKAIGRTRGEQASSKLVLPMVV-IFMIVIVLLGAPAFMMM 288
>gi|296284555|ref|ZP_06862553.1| hypothetical protein CbatJ_13051 [Citromicrobium bathyomarinum
JL354]
Length = 323
Score = 109 bits (273), Expect = 6e-22, Method: Composition-based stats.
Identities = 58/309 (18%), Positives = 120/309 (38%), Gaps = 31/309 (10%)
Query: 9 FDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSA 68
D +L + ++ L+ A + +L++R+ V + D A
Sbjct: 1 MDVIQLFILSLGFLAAIGLVAAALAGPSTRKQLQRRLSGV------------RTRHTDDA 48
Query: 69 SSRLRTRDSKSLRNFVKKLNLKAI--LVDENIVNKLRAAGFRSEYSLNILLVVRLVVPII 126
++R+ ++ K+L K+ A + + +L+A G + + L V I
Sbjct: 49 NARVESQMKKALAARKPKIQKAAGNGSRSQALALRLQATGMGWTVKQYVYASIGLAVMIG 108
Query: 127 FLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDA 186
++ + + + I +G P + + +++R + +PDA
Sbjct: 109 MIVYA-------------QTGVPLLSAIAGLLIGAGVPHMAVGFFMKRRTAQFNARFPDA 155
Query: 187 LDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRT 246
+DLL+ + SG+ + + L VA++I G P+ E I + + + A + +R
Sbjct: 156 IDLLVRGLRSGLPVTETLAVVAQEIPG---PVGIEFKGIIERIKIGRSMEEAMQESADRL 212
Query: 247 QMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFF 306
+ AL G ++ ++L L R M+ + KA S K + I+
Sbjct: 213 GIAEFNFFVIALAIQRETGGNLAETLSNLSDVLRKRAQMKLKIKAMSSESKASA-YIVGS 271
Query: 307 LPVLILVII 315
LP L+ +I
Sbjct: 272 LPFLVFAMI 280
>gi|296130402|ref|YP_003637652.1| Type II secretion system F domain protein [Cellulomonas flavigena
DSM 20109]
gi|296022217|gb|ADG75453.1| Type II secretion system F domain protein [Cellulomonas flavigena
DSM 20109]
Length = 299
Score = 109 bits (273), Expect = 6e-22, Method: Composition-based stats.
Identities = 66/302 (21%), Positives = 130/302 (43%), Gaps = 25/302 (8%)
Query: 15 AVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVER-EILRKQQITSLQKDSASSRLR 73
+A A + +++ V ++ + L+ +AVE +LR +Q + S RL
Sbjct: 4 LIAGLVA-AASVVLFLVGWRAMRADALDG----LAVEDLALLRDEQRRRAEGQSPLERLA 58
Query: 74 TRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGII 133
R +R +L + I +I ++ AG +++ LL +
Sbjct: 59 ARQVPWIRR---RLGPRRI---ASIQRRIDEAGRPDGMTVDGLLTR----------IAWW 102
Query: 134 WIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLIC 193
+ +L V +L + P +S ++R+ + R PD LD+L +
Sbjct: 103 CLLCLPLILVLLLIGAVPLALLTLVLPVIMPLGRVSGAQRRRRERMDRDLPDFLDVLAVT 162
Query: 194 VESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRN 253
V +G++ AL RV++ G PLSEE+ LT+ +++ + + AF++ R+ + V
Sbjct: 163 VMAGVNFRAALARVSQHFEG---PLSEEIDLTLHQIANGASVRQAFQDLRRRSASESVGQ 219
Query: 254 ATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILV 313
AL+QS G + +SL+ + + R + AA P++T+ + +P ++
Sbjct: 220 FVSALLQSQELGAPLAESLQRIAEDMRKASGQRQRQAAAKASPRVTLVTSMVLVPGALVF 279
Query: 314 II 315
I
Sbjct: 280 IF 281
>gi|13474664|ref|NP_106233.1| hypothetical protein mlr5603 [Mesorhizobium loti MAFF303099]
gi|14025419|dbj|BAB52019.1| mlr5603 [Mesorhizobium loti MAFF303099]
Length = 337
Score = 109 bits (272), Expect = 6e-22, Method: Composition-based stats.
Identities = 55/309 (17%), Positives = 122/309 (39%), Gaps = 20/309 (6%)
Query: 9 FDATELAVAITTAVSIFSLIYA-VVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDS 67
D T LA + S ++ YA + + KR++++ E R + + +
Sbjct: 4 IDGTVLAFVVLAGFSAGAVAYAFLFTQISNEKQAGKRLETIKTA-ETDRSIVKATRDRAT 62
Query: 68 ASSRLRTRDSKSLRNFVKKLNLK-AILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPII 126
+++ R SL+ +K K + + + +LR AG + S+ + + +
Sbjct: 63 DAAKRRKSVQDSLKELDEKQKTKDSAIKKPPLKAQLRQAGM--KVSIERFYIYSAICGLA 120
Query: 127 FLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDA 186
++ + L + V+L G +G P ++S +R + +P+A
Sbjct: 121 LTVVAFVV---------GAPMLVLPGVLLAGALG--LPRWFVSFRRARRVKAFLNEFPNA 169
Query: 187 LDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRT 246
LD+++ V+SG+ ++ A+R +A + P+ E + + A
Sbjct: 170 LDIIVRAVKSGLPLNDAVRLIANE---SPEPVKAEFRRIVDSQQMGISIPDATLRMPETM 226
Query: 247 QMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFF 306
+ + G ++ ++L L R + M+A+ +A S+ K + II
Sbjct: 227 PCTEASFFGIVIQIQSQAGGNLSEALGNLSRVLRDRKKMKAKVQALSMEAKASAA-IIGA 285
Query: 307 LPVLILVII 315
LP ++ ++
Sbjct: 286 LPFIVAFLV 294
>gi|92113785|ref|YP_573713.1| type II secretion system protein [Chromohalobacter salexigens DSM
3043]
gi|91796875|gb|ABE59014.1| type II secretion system protein [Chromohalobacter salexigens DSM
3043]
Length = 297
Score = 109 bits (272), Expect = 7e-22, Method: Composition-based stats.
Identities = 54/271 (19%), Positives = 115/271 (42%), Gaps = 5/271 (1%)
Query: 57 KQQITSLQKDSASSRLRTRDSKSLRNFVK-KLNLKAILVDENIVNKLRAAGFRSEYSLNI 115
Q+ Q +A + R +S LR+ +++ + + LR AGF +
Sbjct: 25 AQRAAERQTPTAPAPWRQTESWLLRSGSAWRVHRRRHARSAELAIILRQAGFIGSRAQAR 84
Query: 116 LLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKR 175
LL V ++ + +LG++W + + + L + L G V + W+ N ++R
Sbjct: 85 LLAVLGILAVSVTLLGMLWGWEQGRGVAGSLFLGLALGALTGVVAW----AWLKNRRRRR 140
Query: 176 QSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNR 235
+ L + + E+G++++ L+ + +++ + E+ ++ R
Sbjct: 141 TRVLDEEIGLVLQVTRMLWEAGMTLESVLQGLIDNLANTAPETVRELRSVTHKIEAGQAR 200
Query: 236 QVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLG 295
+ A E + + + + L Q G DSLR L R R ++ L
Sbjct: 201 EEALEEVAGIQASEGLGDLLKLLAQVSASGGGARDSLRTLADLLRDRRRTRLQEAVTRLS 260
Query: 296 PKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
K+++ M++F P L++V+ GPA+L++ +
Sbjct: 261 GKMSLVMMVFLFPALLIVLAGPAVLNLAGAL 291
>gi|325066927|ref|ZP_08125600.1| Type II secretion system F domain [Actinomyces oris K20]
Length = 314
Score = 109 bits (272), Expect = 7e-22, Method: Composition-based stats.
Identities = 52/304 (17%), Positives = 107/304 (35%), Gaps = 15/304 (4%)
Query: 22 VSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLR------TR 75
V L+ + L R++ R S S + T
Sbjct: 13 VGAVGLLSVISALRRRRPTLMARLEPYVHRRPTTSGLLAAPAGPTSDGSTVAGLLMATTA 72
Query: 76 DSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWI 135
+ SL + L A +++ +L +G S ++ + +++ L+L +
Sbjct: 73 HALSLGRLMDTLGSSA----DSVRRRLTRSG--SSLGVDQFRLQQVLWSATALLLVLTAG 126
Query: 136 FGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVE 195
+ ++ G A W++ V KR S I+ PD ++LL + V
Sbjct: 127 GLAALARSVNVPALILLCLMATVAGAAARDWWLTRAVAKRLSRIEAQLPDVVELLALAVG 186
Query: 196 SGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNAT 255
+G A+ R+ G L +E+ T+ ++ A + R V
Sbjct: 187 AGQGPVPAIERIVALGRG---DLVDELSSTLTDIRSGTVLSTALDRMERRVGSVHVTRLC 243
Query: 256 QALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVII 315
+A+I + GT + + LR ++ R + ++ VP++ LP+ ++ +
Sbjct: 244 EAIIVALERGTPLAEVLRSQAADVREAARQDLMEEGGRREIAQMVPVVFLVLPITVVFAL 303
Query: 316 GPAI 319
P +
Sbjct: 304 FPGL 307
>gi|148258239|ref|YP_001242824.1| putative pilus assembly protein [Bradyrhizobium sp. BTAi1]
gi|146410412|gb|ABQ38918.1| putative pilus assembly protein [Bradyrhizobium sp. BTAi1]
Length = 324
Score = 109 bits (272), Expect = 7e-22, Method: Composition-based stats.
Identities = 56/306 (18%), Positives = 126/306 (41%), Gaps = 31/306 (10%)
Query: 24 IFSLIYAVVIPSLGSGE-LEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRN 82
I + + + P L E+R SVA ++R+ + + R + SL++
Sbjct: 16 IGGIAWVFLYPMLSGERKAEQRRSSVAKSEPVVRQAERNQRSR-------REQVESSLKD 68
Query: 83 FVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLL 142
K ++ + + ++ AG ++++ ++ V+ + +
Sbjct: 69 LEAKAQKQSKVP---LNLRISQAGL--DWTVQKFWIISGVLGFMAAAI-----------A 112
Query: 143 EYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQ 202
+ +GA+ L GF P ++ L ++R+ A PDA+D+++ +++G+ + +
Sbjct: 113 FFGGGGPLGALGLGFAAGFGLPRWILNFLKKRREKKFLAALPDAVDVIVRGIKAGLPLFE 172
Query: 203 ALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSD 262
+++ VA D PL E L I + A Y R + +
Sbjct: 173 SIKVVAAD---APEPLRSEFLAIIETQAIGMPLGEACARLYERMPLPEANFFGIVVAIQQ 229
Query: 263 RYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIG---PAI 319
+ G ++ ++L L R + M + +A S+ K + II LP ++++++ P
Sbjct: 230 KSGGNLSEALGNLSKVLRDRKKMAEKIQAMSMEAKASAG-IIGSLPPIVMLLVYLSTPDY 288
Query: 320 LSIIDT 325
+S++ T
Sbjct: 289 ISLLWT 294
>gi|304392380|ref|ZP_07374321.1| type II secretion system protein [Ahrensia sp. R2A130]
gi|303295484|gb|EFL89843.1| type II secretion system protein [Ahrensia sp. R2A130]
Length = 332
Score = 109 bits (272), Expect = 7e-22, Method: Composition-based stats.
Identities = 58/289 (20%), Positives = 115/289 (39%), Gaps = 21/289 (7%)
Query: 29 YAVVIPSLGSGELEK-RMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKL 87
YA++ S+ S + K RM+ + ++++ K + + + R +L+N +
Sbjct: 22 YALLYNSIASDKKSKERMQRLQMDKKTKMKVESRKMDEKQ----RRKSREAALKNVDDQK 77
Query: 88 NLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQ 147
+ E L AGF SL VV V+ I+F + ++++ +
Sbjct: 78 SKGKTAGKETFREILEQAGF--TISLGKFYVVSAVIGILFFFIALVFMGATLPIAGGVGF 135
Query: 148 LRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRV 207
+ AP W+ +KR ++ + +P+A+D+++ ++SG+ ++ LR +
Sbjct: 136 VMGFG----------APRWWVKRKRKKRFAAFTKTFPNAIDVIVRGIKSGLPLNDCLRII 185
Query: 208 AEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTS 267
A D P+ E I A E Y + + G +
Sbjct: 186 ATD---SDEPVRGEFRKLIEAAQMGIPVPEACERLYKSIPTSETNFFSIVIAIQSSAGGN 242
Query: 268 IGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIG 316
+ ++L L R R M + +A S K T MII LP ++ +++
Sbjct: 243 LSEALGNLSKVLRERRKMADKIQAFSSEAK-TSTMIIGALPFVVAIMVF 290
>gi|222084473|ref|YP_002543002.1| pilus assembly protein [Agrobacterium radiobacter K84]
gi|221721921|gb|ACM25077.1| pilus assembly protein [Agrobacterium radiobacter K84]
Length = 335
Score = 109 bits (272), Expect = 8e-22, Method: Composition-based stats.
Identities = 48/303 (15%), Positives = 118/303 (38%), Gaps = 23/303 (7%)
Query: 25 FSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFV 84
+ ++Y+ + + R+K+ +R ++ + + ++ + V
Sbjct: 24 YGVLYSQIEAQKKTDSRVSRVKAAESDRTKVKVARDRVQEMSKRRKSVQDTLKDLEKRQV 83
Query: 85 KKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEY 144
+ K +++ +L AG + V ++ + +++ ++ +
Sbjct: 84 ENTKKK-----QSLKARLVQAGLS--LTPARFYVFSVLFGLFVMVVAFLFGAPLAVIAGL 136
Query: 145 PFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQAL 204
PF F P + L+++RQ+ +P+ALDL+ + SG+ ++ A+
Sbjct: 137 PF-----------AAAFGLPRWVVGFLIKRRQNKFLEEFPNALDLITRSIRSGLPLNDAV 185
Query: 205 RRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRY 264
R VA + P+ E + + A N + V + + +
Sbjct: 186 RLVASEARE---PVRTEFRRVVETQQVGLSMTDACARMNNHMPLQEVNFFSIVIAIQAQA 242
Query: 265 GTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMI--IFFLPVLILVIIGPAILSI 322
G ++ ++L L R + M+A+ A S+ K + +I + F+ +L++ + P + I
Sbjct: 243 GGNLSEALGNLAKVLRERKKMKAKVVALSMEAKASAVIIGALPFIVMLLVYLTSPQYMMI 302
Query: 323 IDT 325
+ T
Sbjct: 303 LFT 305
>gi|302381752|ref|YP_003817575.1| type II secretion system F domain protein [Brevundimonas
subvibrioides ATCC 15264]
gi|302192380|gb|ADK99951.1| Type II secretion system F domain protein [Brevundimonas
subvibrioides ATCC 15264]
Length = 326
Score = 109 bits (272), Expect = 8e-22, Method: Composition-based stats.
Identities = 51/316 (16%), Positives = 123/316 (38%), Gaps = 25/316 (7%)
Query: 15 AVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVE--REILRKQQITSLQKDSASSRL 72
+ I AV F I + +G + + A +R + + + ++ +
Sbjct: 1 MLPILAAVLAFITIAGLGWVFVGGDDSSAQAIKRAEGFTSGTVRTARAKAAKVEANTPEA 60
Query: 73 RTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGI 132
R + + ++ KA + + +L+ AG + ++ + ++ ++ +
Sbjct: 61 RRKAIELQLKEAERKERKARM---TMKARLKHAGMSMG--IRTFWIISACLGVVAFLMPL 115
Query: 133 IWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLI 192
++ A+ + VG P + + ++R + +A+D+++
Sbjct: 116 VFGLNI-----------FVAIGIALVVGLGLPRWVVGFIGKRRLKKFSLEFANAVDVIVR 164
Query: 193 CVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVR 252
++SG+ + + +A + P+ E + L A E Y R +R
Sbjct: 165 GIKSGLPVHDCFKIIARE---SPAPVGPEFQTLVEGLGVGLTLGQALEKMYERIPTPELR 221
Query: 253 NATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLIL 312
T + + G ++G++L L + R+ R+M + KA S + II LP +++
Sbjct: 222 FFTIVIAIQQKTGGNLGEALSNLTTVLRARRMMGEKIKALSSEATASAG-IIGSLPPVVM 280
Query: 313 VIIG---PAILSIIDT 325
++G PA + ++ T
Sbjct: 281 TLVGLTTPAYMGLMFT 296
>gi|256827715|ref|YP_003151674.1| Flp pilus assembly protein TadC [Cryptobacterium curtum DSM 15641]
gi|256583858|gb|ACU94992.1| Flp pilus assembly protein TadC [Cryptobacterium curtum DSM 15641]
Length = 306
Score = 108 bits (271), Expect = 8e-22, Method: Composition-based stats.
Identities = 46/222 (20%), Positives = 97/222 (43%), Gaps = 10/222 (4%)
Query: 103 RAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFC 162
R AG SE S R ++ G + + ++ ++ + G+
Sbjct: 91 RKAGLLSEVSAAGWSYTRREAILVGTAGGTL------VGMMVSLEVSAIGALVGAFCGWR 144
Query: 163 APSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEM 222
A + V R+ ++R +AL +L + + SG+S D+AL + L+ E+
Sbjct: 145 AVPWALGREVVLRKKQMERHLSEALSILCLGLRSGLSFDRALEKYCASFPTM---LASEL 201
Query: 223 LLT-IAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRS 281
+A ++ L R A ++ +R ++++S R+G + D+L L +E R
Sbjct: 202 SGAHMAWMTGLTTRTEALHAVASKYDSPLIRRVMDSIVRSMRFGAPLADALDELAAEARL 261
Query: 282 ERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSII 323
R +++ K+ +P+ LP ++L+++GP +L ++
Sbjct: 262 ARKALLDEEVMKAPVKMMIPVGTLILPSMLLMVLGPVLLDLV 303
>gi|15887569|ref|NP_353250.1| components of type IV pilus [Agrobacterium tumefaciens str. C58]
gi|15155106|gb|AAK86035.1| components of type IV pilus [Agrobacterium tumefaciens str. C58]
Length = 334
Score = 108 bits (271), Expect = 9e-22, Method: Composition-based stats.
Identities = 66/322 (20%), Positives = 125/322 (38%), Gaps = 23/322 (7%)
Query: 9 FDATELAVAITTAVSIFSLIYA-VVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDS 67
D T + +A+ A+S +L YA + + R K V E + +
Sbjct: 1 MDPTIVLLAVLVAISAGALAYAFLFQQIEVEKKTTSRFKRVQAA-ETDHTNIKAARDRVQ 59
Query: 68 ASSRLRTRDSKSLRNFVKKLNLKAILVDE-NIVNKLRAAGFRSEYSLNILLVVRLVVPII 126
S+ R SLR+ KK N KA ++ +KL AG S+ ++
Sbjct: 60 ELSKRRKSMQDSLRDMEKKQNEKAKKAKNVSLRDKLVQAGL--TISVRQFHLLSAGAAAC 117
Query: 127 FLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDA 186
+ +I+ + A+ + P ++ L+++RQ +P+A
Sbjct: 118 AAFISLIYGLSL-----------LTALPIAVVAALGLPRWVLAFLLKRRQKKFLEEFPNA 166
Query: 187 LDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRT 246
LD++ ++SG+ ++ A+R +A D P+ E + E
Sbjct: 167 LDVMCRSIKSGLPLNDAVRLIASDGQE---PVKTEFQRVVDAQQVGIGIPQGIERMMLTM 223
Query: 247 QMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFF 306
+ V + + + G ++ ++L L R R M A+ A S+ K + II
Sbjct: 224 PLFEVSFFSIVINIQAQAGGNLSEALSNLSRVLRDRRKMRAKVNALSMEAKASAV-IIGA 282
Query: 307 LPVLILVII---GPAILSIIDT 325
LP ++++++ P LSI+ T
Sbjct: 283 LPFIVMLLVHFTSPDYLSILFT 304
>gi|225174957|ref|ZP_03728954.1| type II secretion system protein [Dethiobacter alkaliphilus AHT 1]
gi|225169597|gb|EEG78394.1| type II secretion system protein [Dethiobacter alkaliphilus AHT 1]
Length = 322
Score = 108 bits (271), Expect = 1e-21, Method: Composition-based stats.
Identities = 52/302 (17%), Positives = 118/302 (39%), Gaps = 22/302 (7%)
Query: 22 VSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKD-SASSRLRTRDSKSL 80
V + + + AV + G L R +V E+ + D S LR + + L
Sbjct: 5 VLVGAFLTAVFLVYGLYGLLFSRRLAVLDRLEMQTMEPEEMWHADISKRQGLRQQSLQIL 64
Query: 81 RNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDK 140
K + K+ L +++ KL A + + + +V I +L +
Sbjct: 65 GAMGKMFSRKSYL--DSMHRKLIQA--HILLRPDEFIGLVMVSGIGAALLFFL------- 113
Query: 141 LLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISI 200
+L+ +GF AP +++ +R ++ P+AL+++ + +G S
Sbjct: 114 -----LTGSFLMAVLVAVIGFKAPGIYVDVAKGRRMQALNNQLPEALNIISSGLRAGYSF 168
Query: 201 DQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQ 260
QA+ V ++ P+++E + + + A RT + + +L+
Sbjct: 169 PQAMAVVGREM---DAPIADEFNRVLRDNRLGKSMDDALLEMTARTDNEDLDLVVTSLLI 225
Query: 261 SDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF--FLPVLILVIIGPA 318
+ G ++ + L + R ++ E +A + +++ +I+ L+L++I P
Sbjct: 226 QRQVGGNMAEVLNKIEHTIRERMRIKGEIRALTAQQRMSAVIIVLLPIAVALLLLVINPE 285
Query: 319 IL 320
+
Sbjct: 286 YM 287
>gi|209551763|ref|YP_002283680.1| type II secretion system protein [Rhizobium leguminosarum bv.
trifolii WSM2304]
gi|209537519|gb|ACI57454.1| type II secretion system protein [Rhizobium leguminosarum bv.
trifolii WSM2304]
Length = 335
Score = 108 bits (271), Expect = 1e-21, Method: Composition-based stats.
Identities = 46/287 (16%), Positives = 118/287 (41%), Gaps = 23/287 (8%)
Query: 46 KSVAVEREILRKQQITSLQKDSASSRLRT--RDSKSLRNFVKKLNLKAILVDENI---VN 100
K A + ++ + ++ +A R++ + KS+++ +K L + + +
Sbjct: 35 KKSASRIDRVKSAESDRVKVKAARDRVQEMSKRRKSVQDNLKDLEKRQHEKTKKTLTMKS 94
Query: 101 KLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVG 160
+L AG ++ ++ + + L++ + + + +G ++ G
Sbjct: 95 RLVQAGL--TITVGKFYIISAIFACVLLLMAFL--------IGVSLMVIIGIAVVA---G 141
Query: 161 FCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSE 220
P + L+++RQ+ P+ALD++ ++SG+ ++ A+R +A + + P+
Sbjct: 142 LGLPRWIVGFLIKRRQNKFLNELPNALDVITRSIKSGLPLNDAIRLIATE---GTEPVKS 198
Query: 221 EMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETR 280
E I + A + V + + G ++ +++ L R
Sbjct: 199 EFRRVIEAQQVGLSIPDACARMTAHMPLQEVSFFAIVIAIQSQAGGNLSEAIGNLSKVIR 258
Query: 281 SERLMEAEKKAASLGPKLTVPMI--IFFLPVLILVIIGPAILSIIDT 325
R M+A+ A S+ K + +I + F+ ++ + P+ + I+ T
Sbjct: 259 ERRKMKAKVSALSMEAKASAVIIGALPFIVATLVYLTSPSYMMILFT 305
>gi|110632960|ref|YP_673168.1| type II secretion system protein [Mesorhizobium sp. BNC1]
gi|110283944|gb|ABG62003.1| type II secretion system protein [Chelativorans sp. BNC1]
Length = 338
Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats.
Identities = 52/317 (16%), Positives = 119/317 (37%), Gaps = 25/317 (7%)
Query: 13 ELAVAITTAVSIFSLIYAVVIPSLGS-GELEKRMKSVAVEREILRKQQITSLQKDSASSR 71
L V +S+ + A+ P +R + +A L +++ ++ D R
Sbjct: 13 PLMVFAFATLSVGGVAAALFYPQFAKASPFRRRFQGLAA----LGEEEESTAPADEDRDR 68
Query: 72 LRTRDSKSLRNFVKKLNLKAILV-DENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLIL 130
R K+LR +K K + +LR AG ++ V + +
Sbjct: 69 -RKSVEKTLRELEEKQKAKTRKAGKPTLSGRLRQAGLS--WNRRAYFTACAVCGALTFPV 125
Query: 131 GIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLL 190
++ G + +V G P ++++ ++R + +A+D++
Sbjct: 126 ALLLGAG-----------SLVSVGFALAGGLLLPHFYVASRRKRRFKQFTNEFSNAVDVI 174
Query: 191 LICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDC 250
+ ++SG+ + LR +A + P+ E + + + + + A + + R +
Sbjct: 175 VRGLKSGLPVGDCLRIIAAEAQE---PVKSEFVAIVQDQTLGISLDEAVQRLWERVPLAE 231
Query: 251 VRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMI--IFFLP 308
+ R G S+ ++L L R + M A+ +A S K + +I + F
Sbjct: 232 ANFFAIVVGLQSRTGGSLAEALGNLSKVLRERKKMSAKIRAMSSEAKSSAGIIGALPFFV 291
Query: 309 VLILVIIGPAILSIIDT 325
+ + P +S++ +
Sbjct: 292 SAAIYLTSPDYMSLLFS 308
>gi|222147178|ref|YP_002548135.1| component of type IV pilus [Agrobacterium vitis S4]
gi|221734168|gb|ACM35131.1| component of type IV pilus [Agrobacterium vitis S4]
Length = 334
Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats.
Identities = 53/286 (18%), Positives = 110/286 (38%), Gaps = 18/286 (6%)
Query: 42 EKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNK 101
R+ V K+Q+ + S R ++ K+ + +++ +
Sbjct: 35 ATRLARVKNAEADTAKKQVARDRVQELSKRRKSVQDTLKEIERKQNEKNKKISSQSLKQR 94
Query: 102 LRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGF 161
L G + SL + + ++F L + L + +G G
Sbjct: 95 LGQTGL--DVSLIQFSIASTTLGLVFFCLCFV--------LGMSLFVSLGIAFTAGAG-- 142
Query: 162 CAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEE 221
P +S L+++RQ +P+ALD+++ ++SG+ ++ ALR +A D P+ E
Sbjct: 143 -LPRWIVSFLIRRRQEKFLTEFPNALDVMVRSIKSGLPLNDALRMIAVDAQE---PVKTE 198
Query: 222 MLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRS 281
+ A +N + V + + G ++ ++L L R
Sbjct: 199 FRRVVDAQQLGITVPEACGRMFNSMPLQEVSFFAIVIAIQSQAGGNLSEALSNLSKVLRE 258
Query: 282 ERLMEAEKKAASLGPKLTVPMI--IFFLPVLILVIIGPAILSIIDT 325
R M+A+ A S+ K + +I + F+ ++ I PA + ++ T
Sbjct: 259 RRKMKAKVSALSMEAKASAVIIGALPFIVAFLVYISSPAYIMVLFT 304
>gi|16127171|ref|NP_421735.1| hypothetical protein CC_2941 [Caulobacter crescentus CB15]
gi|221235972|ref|YP_002518409.1| TadB-like pilus assembly protein [Caulobacter crescentus NA1000]
gi|7208429|gb|AAF40196.1|AF229646_8 TadB [Caulobacter crescentus CB15]
gi|13424567|gb|AAK24903.1| hypothetical protein CC_2941 [Caulobacter crescentus CB15]
gi|220965145|gb|ACL96501.1| TadB-related pilus assembly protein [Caulobacter crescentus NA1000]
Length = 325
Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats.
Identities = 62/314 (19%), Positives = 128/314 (40%), Gaps = 24/314 (7%)
Query: 14 LAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLR 73
+ I ++I L +A S + KR + +A E R+ + + + R
Sbjct: 4 VLAGILGFITIAGLGFAFAGGDSASSKAAKRAQIIAKGGE--RQANVRAKAAANTPDARR 61
Query: 74 TRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGII 133
K+L++ +K ++ +I +L+AAG ++ + +V + + I II
Sbjct: 62 QAILKALKDQDRKQKKASL----SIAARLQAAGL--GDNVKMFWIVSGTLGL--FIAMII 113
Query: 134 WIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLIC 193
+ G L+ GA P + L + R A+ DA+D+++
Sbjct: 114 LLLGQSPLVALGAGFAAGAG---------LPRWVLGFLAKGRTQKFTEAFADAVDIIVRG 164
Query: 194 VESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRN 253
++SG+ + L+ + ++ PL+ E + ++ A E Y R + +R
Sbjct: 165 IKSGLPVHDCLKIIGKEC---PEPLAGEFRILTENVAMGVPMDAALEKMYERMPTNELRF 221
Query: 254 ATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP--VLI 311
L + G ++ ++L L + RS +LM+ + KA S + +I P V +
Sbjct: 222 FAIVLAIQQKTGGNLAEALGNLSAVLRSRKLMKEKIKALSAEAVASAFIIGCLPPGVVTL 281
Query: 312 LVIIGPAILSIIDT 325
+ + PA ++ + T
Sbjct: 282 ISVTSPAYMAPMFT 295
>gi|28572729|ref|NP_789509.1| hypothetical protein TW581 [Tropheryma whipplei TW08/27]
gi|28410862|emb|CAD67247.1| putative membrane protein [Tropheryma whipplei TW08/27]
Length = 298
Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats.
Identities = 42/198 (21%), Positives = 77/198 (38%), Gaps = 4/198 (2%)
Query: 123 VPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVG-FCAPSVWISNLVQKRQSSIKR 181
+ I L+ G+ W+ L + G + + G F + V+KR+ I
Sbjct: 100 IAISALLTGVFWVLFCLLLFSGQVNIVFGLLAPAVFAGSFWCIENNLRRYVKKRKQKILN 159
Query: 182 AWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFEN 241
P A + L + V +G + A++R+ G S E+ + +S + +
Sbjct: 160 EMPSAFEFLSLSVSAGEGVLDAIKRICFISKG---EFSIELKKVLIGVSSGDTLERCLKR 216
Query: 242 FYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVP 301
+ + + A +I + GT + D L E R+ + ++A + P
Sbjct: 217 MAAKLDIVSIDRAVSQIITAIERGTPLADILIKQAKEARNATRVALIEQAGKKEIAMMFP 276
Query: 302 MIIFFLPVLILVIIGPAI 319
++ F LPV IL I P I
Sbjct: 277 LVFFILPVTILFAIFPGI 294
>gi|114705451|ref|ZP_01438359.1| probable pilus assembly protein [Fulvimarina pelagi HTCC2506]
gi|114540236|gb|EAU43356.1| probable pilus assembly protein [Fulvimarina pelagi HTCC2506]
Length = 335
Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats.
Identities = 57/316 (18%), Positives = 122/316 (38%), Gaps = 21/316 (6%)
Query: 12 TELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSR 71
+ + + +S L YA + P L + + K+ E R + I + ++ ++
Sbjct: 5 GMMLFVLLSTISAGCLAYAFMQPKLAASKRVAARKTTYSRDEASRTRVIEAKERMQEQAK 64
Query: 72 LRTRDSKSLRNFVKKLNLKAI-LVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLIL 130
R +L++ + + + ++ AG + RL+
Sbjct: 65 RRRALQNNLKDLEDRAKERGGHSAKPTLQQRIDQAGLKITAK-----KFRLISAG----- 114
Query: 131 GIIWIFGYDKLLEYPFQLRVGAVILIGYV-GFCAPSVWISNLVQKRQSSIKRAWPDALDL 189
+ LL F L + A + I V G P ++SN +KR + ++P A+DL
Sbjct: 115 ----LAAAAFLLTLVFGLPILATLGIAVVAGLGLPRAFLSNRRKKRINDFSNSFPTAIDL 170
Query: 190 LLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMD 249
++ V++G+ ++ LR V D+ P+S E + A + Y + +
Sbjct: 171 IVRGVKAGLPLNDTLRTVVSDVPD---PVSSEFQKVVEAQQMGVTLGDACDRLYKQVPLP 227
Query: 250 CVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMI--IFFL 307
+ + G ++ ++L L R + M + +A S+ K + +I I L
Sbjct: 228 ETNFFAIVIAIQSQAGGNLSEALGNLSRVLRERKKMRQKIQAVSMEAKASASIIGSIPVL 287
Query: 308 PVLILVIIGPAILSII 323
++ + P L+++
Sbjct: 288 VASMIYMTSPDYLNVL 303
>gi|256824884|ref|YP_003148844.1| Flp pilus assembly protein TadB [Kytococcus sedentarius DSM 20547]
gi|256688277|gb|ACV06079.1| Flp pilus assembly protein TadB [Kytococcus sedentarius DSM 20547]
Length = 309
Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats.
Identities = 43/232 (18%), Positives = 84/232 (36%), Gaps = 5/232 (2%)
Query: 95 DENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVI 154
+E + +L AG + + V+ + G + +
Sbjct: 83 EETLGRRLARAG--QVPDVQGYRAQQAVLGCVLAAAGAALGVLLWGSGRAAPLVAPALAL 140
Query: 155 LIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQ 214
+ G G ++ V +R+ + +P +LL + V +G S AL RVA
Sbjct: 141 VGGIAGVMLRDQLLARRVAQRERRVVEEFPAVAELLALAVAAGESATAALERVA---RLS 197
Query: 215 SVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRV 274
LS E+ + E + A E RT++ V +I + GT + D LR
Sbjct: 198 RGELSRELTQALGEARTGASLPTALEGIAERTEVPSVARFVDGVIIAVERGTPLADVLRA 257
Query: 275 LVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
++ R + + +P++ F LPV ++ + P + ++ +
Sbjct: 258 QATDAREAARQHVIAEGGRREILMMIPVVFFVLPVTVVFAMYPGLGALQVNL 309
>gi|187919328|ref|YP_001888359.1| type II secretion system protein [Burkholderia phytofirmans PsJN]
gi|187717766|gb|ACD18989.1| type II secretion system protein [Burkholderia phytofirmans PsJN]
Length = 325
Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats.
Identities = 63/320 (19%), Positives = 126/320 (39%), Gaps = 30/320 (9%)
Query: 9 FDATELAVAITTAVSIFSLIYAVVI-PSLGSGELEKRMKSVAVEREILRKQQITSLQKDS 67
+ + + A+ +++ I AV + S G+ KRM E +R
Sbjct: 1 MNTSFIGFAVLAFLAVVLAIEAVYLFWSSHHGKDVKRM------DERIRALSAGGNVSSQ 54
Query: 68 ASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIF 127
S L+ R FV +L L+ V + +L+ +G ++S+ + L+ ++
Sbjct: 55 QLSILKQRMLSE-SPFVTQLLLRIPRV-HALDRQLQQSGL--KWSVARFVTYTLLCAVLG 110
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
+ G + + L + + V P++ + KR ++R PDA
Sbjct: 111 ALGGFVLL------------LPAPVMGVFAVVASLLPTLILCRKRTKRVLQLERQLPDAA 158
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQ 247
DL+ + +G S AL V E++ PL E L E+++ + A N NR
Sbjct: 159 DLIARALRAGHSFPAALGMVGEELPN---PLGGEFALVFDEINYGVSMSDALLNMVNRVP 215
Query: 248 MDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFL 307
++ +R A++ G ++ + L + R + + + S +L+ ++ L
Sbjct: 216 VEDLRYFVIAVLIQREAGGNLAEILGSIAGIIRERLKLLGKVRVLSAEGRLSA-WVLGVL 274
Query: 308 PVLILVIIG---PAILSIID 324
P IL ++ P +S+
Sbjct: 275 PFAILGLLSVLNPGYISVFW 294
>gi|227823975|ref|YP_002827948.1| putative type II/IV secretion system protein TadB, Flp pilus
assembly protein TadB [Sinorhizobium fredii NGR234]
gi|227342977|gb|ACP27195.1| putative type II/IV secretion system protein TadB, Flp pilus
assembly protein TadB [Sinorhizobium fredii NGR234]
Length = 336
Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats.
Identities = 56/288 (19%), Positives = 114/288 (39%), Gaps = 19/288 (6%)
Query: 40 ELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIV 99
+ E R++ V+ E R + + + + S+ R SL+ KK K+ ++
Sbjct: 36 KAEGRLRRVSAA-ETDRAKIKAARDRVNEMSKRRKSLQDSLKELEKKQQEKSANAAPSMK 94
Query: 100 NKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYV 159
+L A + V ++ + LI+ +I G G V LI
Sbjct: 95 KRLVQANLSISPAQ--FYVFSVIFGLFALIVVLIAGAGL---------WIAGGVALITAA 143
Query: 160 GFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLS 219
G P + +V++R +P+ALD+++ ++SG+ ++ ALR +A D P+
Sbjct: 144 G--LPRWLVGAMVKRRCKKFLDEFPNALDVMVRSIKSGLPLNDALRLIASDGQE---PVK 198
Query: 220 EEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSET 279
E + N A + V + + G ++ ++L L
Sbjct: 199 TEFRRVVESQQVGLNVPDACARMIQSIPLPEVNFFAIVIAIQAQAGGNLSEALGNLSKVL 258
Query: 280 RSERLMEAEKKAASLGPKLTVPMI--IFFLPVLILVIIGPAILSIIDT 325
R + M+A+ A S+ K + +I + F+ ++ + P + ++ T
Sbjct: 259 RERKKMKAKVGALSMEAKASACIIGALPFIVATLVYLTSPEYMMVLFT 306
>gi|28493158|ref|NP_787319.1| hypothetical protein TWT191 [Tropheryma whipplei str. Twist]
gi|28476198|gb|AAO44288.1| unknown [Tropheryma whipplei str. Twist]
Length = 298
Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats.
Identities = 43/198 (21%), Positives = 77/198 (38%), Gaps = 4/198 (2%)
Query: 123 VPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVG-FCAPSVWISNLVQKRQSSIKR 181
+ I L+ GI W+ L + G + + G F + V+KR+ I
Sbjct: 100 IAISALLTGIFWVLFCLLLFSGQVNIVFGLLAPAVFAGSFWCIENNLRRYVKKRKQKILN 159
Query: 182 AWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFEN 241
P A + L + V +G + A++R+ G S E+ + +S + +
Sbjct: 160 EMPSAFEFLSLSVSAGEGVLDAIKRICFISKG---EFSIELKKVLIGVSSGDTLERCLKR 216
Query: 242 FYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVP 301
+ + + A +I + GT + D L E R+ + ++A + P
Sbjct: 217 MAAKLNIVSIDRAVSQIITAIERGTPLADILIKQAKEARNATRVALIEQAGKKEIAMMFP 276
Query: 302 MIIFFLPVLILVIIGPAI 319
++ F LPV IL I P I
Sbjct: 277 LVFFILPVTILFAIFPGI 294
>gi|221633001|ref|YP_002522226.1| type II secretion system protein F domain [Thermomicrobium roseum
DSM 5159]
gi|221156079|gb|ACM05206.1| Bacterial type II secretion system protein F domain
[Thermomicrobium roseum DSM 5159]
Length = 323
Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats.
Identities = 56/316 (17%), Positives = 120/316 (37%), Gaps = 30/316 (9%)
Query: 8 LFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDS 67
+F L +A++ A + L+ A + L+ R++ A R +++T+
Sbjct: 1 MFGDPLLLIAVSLAGAAVMLVLAGLHARSRGHSLDHRLEQFA--RSESAPEEVTAGPHLL 58
Query: 68 ASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIF 127
A R + E I L A R ++ L +R +V ++
Sbjct: 59 ARQLDRAVRGRPFA--------------EAIRMSLARADIR--LTVGEFLFLRGLVTLLA 102
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
++G + G + L L + ++ G+ AP ++ + R D +
Sbjct: 103 FVIGFLLGRGITQPL-----LGLFTGLVFAVSGWLAPHYYVLWRGRHRLQRFVNQLGDTI 157
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQ 247
L+ + +G S+ Q + VA + + P+SEE + E+ Q A ++ R
Sbjct: 158 GLMANSLRAGYSLLQTMDLVARE---SAPPMSEEFRRVVREVGLGVPLQDALDHLLERIP 214
Query: 248 MDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFL 307
+ + A+ + G ++ L ++ R ++ E + + L+ II L
Sbjct: 215 SEDLDLLVTAIAINHEVGGNLAQILEIIGETIRERVRIKGEIRVLTAQQSLSG-YIISLL 273
Query: 308 P---VLILVIIGPAIL 320
P +++ ++ P+ L
Sbjct: 274 PVGLAILIFLLNPSYL 289
>gi|149186258|ref|ZP_01864572.1| hypothetical protein ED21_31014 [Erythrobacter sp. SD-21]
gi|148830289|gb|EDL48726.1| hypothetical protein ED21_31014 [Erythrobacter sp. SD-21]
Length = 323
Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats.
Identities = 49/303 (16%), Positives = 112/303 (36%), Gaps = 28/303 (9%)
Query: 15 AVAITTAVSIFSLI-YAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLR 73
V + + + + + + ++R++ V ++ S K + +SR
Sbjct: 6 LVLVAGGLLVLATLGVSAFAGPSAGKASQRRLQQVRYRHSESTDAKVESQLKKAIASRKP 65
Query: 74 TRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGII 133
+ ++ + E + +L G +SL+ L V + ++ +
Sbjct: 66 KQFKQA----------GSGSRLEALAVRLDRTG--KGWSLSQYAYASLGVGMAVAVILFL 113
Query: 134 WIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLIC 193
+ P L +G + G P + ++KR + + DA++LL+
Sbjct: 114 ------RSGSLPLSLALGT-----FAGAGIPHFVVGRAIKKRTNQFNVKFADAIELLVRG 162
Query: 194 VESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRN 253
+ SG+ + + L V+++I G P+ EE + + + + + +R +
Sbjct: 163 LRSGLPVTETLNVVSQEIPG---PVGEEFKSIVERIKIGRTMEESLQETADRLGIPEFNF 219
Query: 254 ATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILV 313
L G ++ ++L L R M+ + KA S K + I+ LP ++
Sbjct: 220 FCITLAIQRETGGNLAETLSNLADVLRKRTQMKLKIKAMSSESKASA-YIVGSLPFIVFG 278
Query: 314 IIG 316
+I
Sbjct: 279 LIF 281
>gi|218132581|ref|ZP_03461385.1| hypothetical protein BACPEC_00440 [Bacteroides pectinophilus ATCC
43243]
gi|217992307|gb|EEC58310.1| hypothetical protein BACPEC_00440 [Bacteroides pectinophilus ATCC
43243]
Length = 444
Score = 107 bits (268), Expect = 2e-21, Method: Composition-based stats.
Identities = 38/186 (20%), Positives = 78/186 (41%), Gaps = 10/186 (5%)
Query: 146 FQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALR 205
+ A +L V+ R ++ + + + L + +G+S+ +A
Sbjct: 258 VPAIIMAGVLAAAALIAGREQGKRKAVRLRNKQLQYDYTEIVSKLTLLTGAGMSVRRAWE 317
Query: 206 RVAEDIGGQSVPL--------SEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQA 257
++A D + + EEM+ T+ ++ + +A+ F R + R
Sbjct: 318 KIALDYNNKMKDMPKEKYHAVYEEMMTTLRQMQSGMSENIAYAEFGRRCGIKEYRKLGTL 377
Query: 258 LIQSDRYGT-SIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIG 316
L Q+ R GT + L E +R A++ G KL +PMI+ L V++++++
Sbjct: 378 LEQNVRKGTRGLSVLLEQESEEAFEQRKNLAKQLGEEAGTKLLLPMIL-MLAVVMVIVMV 436
Query: 317 PAILSI 322
PA++S
Sbjct: 437 PAMMSF 442
>gi|84498180|ref|ZP_00996977.1| putative membrane protein [Janibacter sp. HTCC2649]
gi|84381680|gb|EAP97563.1| putative membrane protein [Janibacter sp. HTCC2649]
Length = 654
Score = 107 bits (268), Expect = 2e-21, Method: Composition-based stats.
Identities = 59/315 (18%), Positives = 121/315 (38%), Gaps = 28/315 (8%)
Query: 15 AVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRT 74
+A A+ + +L + + + R+ V E L + + ++ +S +
Sbjct: 334 LIAALIALFVGALTLVIAVLDPFRSKRHDRVAQV--EHYTLGEASRLPRKAEANASVVAQ 391
Query: 75 RDSKSLRNFV-KKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGII 133
+ + + + + AG E+ + ++ + + + ++L +
Sbjct: 392 SAVRMGERVMAGRETTSRTMALIQRADLPLRAG---EWFVLRVVAIVVGGALTPVVLAMP 448
Query: 134 WIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLIC 193
W F + +G+ P+ + L +R ++ PD L L+
Sbjct: 449 WWFTVP---------------IGIALGYFLPAAVLRMLAGRRAKKFEQMLPDILMLVATT 493
Query: 194 VESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRN 253
+ SG S+ QAL VA D + P +E T+AE + A EN R + +R
Sbjct: 494 LASGFSLTQALDAVARD---SAQPAGKEFSRTLAETRIGADVSDALENMSVRMDSEAMRW 550
Query: 254 ATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILV 313
T A+ G ++ D+LR R ++ + + S +L+ I+ LP+L+ V
Sbjct: 551 TTMAIRIQRDVGGNLADTLRTTAHTLRERESLKRQVNSLSAEGRLSA-YILLGLPILLFV 609
Query: 314 IIG---PAILSIIDT 325
+ PA S++ T
Sbjct: 610 YMAWSNPAYTSLLWT 624
>gi|325264274|ref|ZP_08131005.1| putative bacterial type II secretion system protein F domain
protein [Clostridium sp. D5]
gi|324030345|gb|EGB91629.1| putative bacterial type II secretion system protein F domain
protein [Clostridium sp. D5]
Length = 410
Score = 107 bits (268), Expect = 2e-21, Method: Composition-based stats.
Identities = 44/196 (22%), Positives = 84/196 (42%), Gaps = 11/196 (5%)
Query: 137 GYDKLLEYPFQLRVGAVILIGYVG----FCAPSVWISNLVQKRQSSIKRAWPDALDLLLI 192
G + +YP + R + ++G V F ++ R+ + +P + +
Sbjct: 214 GSKIVWKYPAESRAAGLFVLGIVAAGAVFFLDRQKHKQVLADRKKQLAADYPQLISQFTL 273
Query: 193 CVESGISIDQALRRVAEDIGGQ-----SVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQ 247
+ +G+S+ +A ++AE+ + EEM T+ E+ + +E F +R
Sbjct: 274 FLGAGMSVRRAWFKMAEEYEKRRDRKGPRIAYEEMSYTMHEIQGGVSEGECYERFGSRCG 333
Query: 248 MDCVRNATQALIQSDRYGT-SIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFF 306
+ R L Q+ R G + + LR ++ +R +A K G KL PM
Sbjct: 334 LPAYRRFGALLSQNLRKGGRGLNELLRKEAADAFEDRKKQARKLGEEAGTKLLGPM-FLM 392
Query: 307 LPVLILVIIGPAILSI 322
L V++++I+ PA SI
Sbjct: 393 LAVVLIIIVVPAFFSI 408
>gi|85707699|ref|ZP_01038765.1| hypothetical protein NAP1_00650 [Erythrobacter sp. NAP1]
gi|85689233|gb|EAQ29236.1| hypothetical protein NAP1_00650 [Erythrobacter sp. NAP1]
Length = 323
Score = 107 bits (267), Expect = 3e-21, Method: Composition-based stats.
Identities = 53/306 (17%), Positives = 119/306 (38%), Gaps = 30/306 (9%)
Query: 13 ELAVAITTAVSIFSLIYAVVIPSLG---SGELEKRMKSVAVEREILRKQQITSLQKDSAS 69
E+ + V IFS + A I G ++R++++ ++ S K + +
Sbjct: 2 EIIQTLLITVVIFSALVAGYILLTGPAAGKAQKRRLEALRYRHSESTDAKVESQFKKAIA 61
Query: 70 SRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLI 129
+R + + E + +L G ++++ L V + II ++
Sbjct: 62 ARKPKAHKVA----------GSGSRTEALEVRLDRTG--KGWTVSQYLYV--TLGIILVV 107
Query: 130 LGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDL 189
+++I ++ +VG P + +S ++KR + + D ++L
Sbjct: 108 GVLLYI---------QTGAPFLSLAAGAFVGLGLPHLVVSFFIKKRTNDFNAKFADGIEL 158
Query: 190 LLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMD 249
L+ + SG+ + + L VA+++ G P+ E + + + + + +R +
Sbjct: 159 LVRGLRSGLPVTETLAVVAQEVPG---PVGLEFKGIVERIKIGKTMEDSLQETADRLGIP 215
Query: 250 CVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPV 309
T L G ++ ++L L R M+ + KA S K + I+ LP
Sbjct: 216 EFNFFTITLAIQRETGGNLAETLSNLADVLRKRTQMKLKIKAMSSESKASA-YIVGSLPF 274
Query: 310 LILVII 315
++ +I
Sbjct: 275 IVFGLI 280
>gi|302391032|ref|YP_003826852.1| type II secretion system F domain protein [Acetohalobium arabaticum
DSM 5501]
gi|302203109|gb|ADL11787.1| Type II secretion system F domain protein [Acetohalobium arabaticum
DSM 5501]
Length = 327
Score = 107 bits (267), Expect = 3e-21, Method: Composition-based stats.
Identities = 57/315 (18%), Positives = 126/315 (40%), Gaps = 35/315 (11%)
Query: 18 ITTAVSIFSLIYAVVIPS-----LGSGELEKRMKSVAVEREILRKQQITSLQKD---SAS 69
I ++F ++ V+ S ++++R+ + E R Q T+L ++
Sbjct: 3 IIILPAVFLVVTTAVVVSYKLLTAREAKVKERLDKYSAI-EEGRIGQNTALDREEDVGER 61
Query: 70 SRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLI 129
L+ R + F+ +L A L E L ++ +++ LV +I +
Sbjct: 62 KSLKKRLLEKFNQFLTSFSLVASLEAELQKTDL-------PLKVSEFIIINLVSCVILGL 114
Query: 130 LGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDL 189
+GI+ + + P ++ +KR D+L +
Sbjct: 115 IGILVSNNLLVPVLLLSLGLI------------IPYFYLKYSQKKRLDKFNEQINDSLTI 162
Query: 190 LLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMD 249
+ +++G S QAL VA+++ P+SEE+ + E++ + Q A +R + D
Sbjct: 163 ISNSLKAGYSFFQALEMVAKEM---PPPISEEITRVLKEMNLGASPQDALTALTDRVESD 219
Query: 250 CVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPV 309
+ A++ + G ++ + L + R ++ E + + +++ +II LPV
Sbjct: 220 DLELVVTAVLIQRQVGGNLSEILDNISDTIRERIKIKGEIQTLTAQGRMSG-LIIGLLPV 278
Query: 310 ---LILVIIGPAILS 321
+L +I P ++
Sbjct: 279 GLGGMLFLISPDYMA 293
>gi|167760287|ref|ZP_02432414.1| hypothetical protein CLOSCI_02660 [Clostridium scindens ATCC 35704]
gi|167662170|gb|EDS06300.1| hypothetical protein CLOSCI_02660 [Clostridium scindens ATCC 35704]
Length = 382
Score = 107 bits (267), Expect = 3e-21, Method: Composition-based stats.
Identities = 49/192 (25%), Positives = 87/192 (45%), Gaps = 7/192 (3%)
Query: 137 GYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVES 196
Y K ++Y + + ILI + + I ++++ + +P+ ++ L + + +
Sbjct: 190 SYYKKMDYRGLVLIVMAILIAILLYALKQQNIRKEGEEKKRQMMLDYPEIVNKLALFLGA 249
Query: 197 GISIDQALRRVAEDIG-----GQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCV 251
G+++ +A R+V ED G + EEM E+ ++ENF R +
Sbjct: 250 GMTVKRAWRKVVEDYERHKTDGNARHAYEEMKKACYEMESGVMETESYENFGRRCNVQSY 309
Query: 252 RNATQALIQSDRYGT-SIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVL 310
L Q+ R GT + LR+ + ER A++ G KL +PM + VL
Sbjct: 310 IRLGALLSQNLRKGTKGLTHLLRLESIQAFEERKARAKRLGEEAGTKLLLPMFLMLAIVL 369
Query: 311 ILVIIGPAILSI 322
I+VI+ PA LSI
Sbjct: 370 IIVIV-PAFLSI 380
>gi|257784834|ref|YP_003180051.1| type II secretion system protein [Atopobium parvulum DSM 20469]
gi|257473341|gb|ACV51460.1| type II secretion system protein [Atopobium parvulum DSM 20469]
Length = 204
Score = 107 bits (267), Expect = 3e-21, Method: Composition-based stats.
Identities = 39/200 (19%), Positives = 82/200 (41%), Gaps = 6/200 (3%)
Query: 121 LVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIK 180
L+ + F + I++ L++ I+ F V + + + S
Sbjct: 4 LICSLAFALCIAIFVLVMPVNLDHCDVRCYYQHIIRSVKNFK--RVNLRAKSEFTRKSCL 61
Query: 181 RAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLP-NRQVAF 239
R P+ +D+L++ + SG+S D AL +S LS+E+ R+ A
Sbjct: 62 REMPEMIDILILGLSSGLSFDSALDLYC---LRESGELSKELSNAHMTWKLGANTREEAL 118
Query: 240 ENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLT 299
R + +++ + ++ +GT + + L S R E+ E + + K+
Sbjct: 119 NQMAARVGVPSLKSFATVVNEALTFGTPLAEILDRQASVLRDEQRSLLETEIEKIPIKML 178
Query: 300 VPMIIFFLPVLILVIIGPAI 319
+P+ +P ++L I+GP +
Sbjct: 179 IPLGTLIVPAMLLAILGPLL 198
>gi|188581664|ref|YP_001925109.1| type II secretion system protein [Methylobacterium populi BJ001]
gi|179345162|gb|ACB80574.1| type II secretion system protein [Methylobacterium populi BJ001]
Length = 323
Score = 107 bits (267), Expect = 3e-21, Method: Composition-based stats.
Identities = 54/298 (18%), Positives = 115/298 (38%), Gaps = 30/298 (10%)
Query: 15 AVAITTAVSIFSLIYAVVIPSLGSGEL-EKRMKSVAVEREILRKQQITSLQKDSASSRLR 73
A AV+ +L Y ++P L E+R K++ R +L ++ + +++ + L+
Sbjct: 8 LAAGLVAVASGALAYVFLMPLLSGERRAEQRRKALGQSRAVLAERGAAANRREQVAKSLK 67
Query: 74 TRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGII 133
L K + ++ AG ++S +V V + + +
Sbjct: 68 E------------LEAKKDKTKVTLELRIARAGL--DWSRRKYQIVSAVTAVGVALAAFL 113
Query: 134 WIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLIC 193
+ A++ + GF P+ + ++R ++ P+A+D+++
Sbjct: 114 ISHNV-----------IVALLGLFAGGFGLPAWMLKWRQKRRVAAFVEELPNAMDVVVRG 162
Query: 194 VESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRN 253
+ SGI + LR ++ + PL E + + + A Y R + V
Sbjct: 163 LRSGIPLGDCLRMISREAKE---PLRSEFRVAMEAQAMGLPMSDAILRMYERVPVTEVNF 219
Query: 254 ATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLI 311
+ + + G ++ ++L L R + M + +A S+ K + II LP LI
Sbjct: 220 FSIVIGIQQKAGGNLSEALSNLSRVLRERKKMAGKIQAMSMEAKASAG-IIGALPFLI 276
>gi|111220778|ref|YP_711572.1| hypothetical protein FRAAL1321 [Frankia alni ACN14a]
gi|111148310|emb|CAJ59982.1| putative membrane protein [Frankia alni ACN14a]
Length = 316
Score = 106 bits (266), Expect = 3e-21, Method: Composition-based stats.
Identities = 44/228 (19%), Positives = 87/228 (38%), Gaps = 6/228 (2%)
Query: 97 NIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILI 156
+ +L AG S+ V +++ + ++G + L P L A+++
Sbjct: 90 ALQRRLTQAG--GRTSIEEFRVQQVICAVSGALVGAFLLALRALLGVGPPALVSVALVVA 147
Query: 157 GYVGFCAPS-VWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQS 215
G G W++ + +R+ + +P +LL + V +G S AL RV+
Sbjct: 148 GAAGGVVGREYWLTRAIGEREDRMLLEFPTVAELLALAVTAGESAIGALERVS---RLTH 204
Query: 216 VPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVL 275
L E+ L +A+ A E RT + + + + GT + D LR
Sbjct: 205 GELGRELRLALADARAGATLVQALEGIAARTALAPLTRFVDGMAVAIERGTPLADILRAQ 264
Query: 276 VSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSII 323
+ R + + + +P++ LP ++ PA++S
Sbjct: 265 AMDVREAGKRQLLEAGGRKEIAMMIPVVFLVLPTTVIFAFYPALVSFT 312
>gi|284045232|ref|YP_003395572.1| type II secretion system F domain protein [Conexibacter woesei DSM
14684]
gi|283949453|gb|ADB52197.1| Type II secretion system F domain protein [Conexibacter woesei DSM
14684]
Length = 275
Score = 106 bits (266), Expect = 3e-21, Method: Composition-based stats.
Identities = 41/177 (23%), Positives = 75/177 (42%), Gaps = 3/177 (1%)
Query: 122 VVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKR 181
V+ I + P +L + ++ GF AP +W+ + R ++
Sbjct: 76 VMAIKGGAAVLGLALTLPLGALLPGRLPLVVPFVLPLGGFVAPDLWLRRRARARGREMEA 135
Query: 182 AWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFEN 241
PD LDLL + + +G+ +++A+ VA+ G L+ E E+ R+ A
Sbjct: 136 ELPDLLDLLRVALGAGLPLERAVGDVADRATGL---LAREWRTVAVEIGLGMPRERALVA 192
Query: 242 FYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKL 298
R V + L ++ R+G +G++L E RS R +++AA PK+
Sbjct: 193 LAERCPTPGVGVLVRTLERAARHGAPLGEALAAQAREARSTRARRLDEQAARAAPKI 249
>gi|294012232|ref|YP_003545692.1| Flp pilus assembly protein TadB [Sphingobium japonicum UT26S]
gi|292675562|dbj|BAI97080.1| Flp pilus assembly protein TadB [Sphingobium japonicum UT26S]
Length = 333
Score = 106 bits (266), Expect = 4e-21, Method: Composition-based stats.
Identities = 51/313 (16%), Positives = 121/313 (38%), Gaps = 24/313 (7%)
Query: 11 ATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASS 70
+ V + ++ I + ++ V R K ++ + S
Sbjct: 5 YIRVFVLVLLFAAVILTIEGIAGWLRARATTDR----VVNRRL---KMIAAGFERSTVLS 57
Query: 71 RLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAG--FRSEYSLNILLVVRLVVPIIFL 128
+LR D + + ++ L AG F + L ++L+ + ++ +
Sbjct: 58 KLRRSDEAVSFDRSSLFGRAGL----GVMRVLHGAGLTFPARTVLTLMLIATSALFLLVM 113
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
+ G+ + + V A+ G +G P + ++ L Q+R+ ++ +P ALD
Sbjct: 114 VGGLAAGYAL------TAGMFVMALAFAGALGIALPMMVLTRLAQRRRKKMEEQFPVALD 167
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
+ + +G I AL + +++ P+ E + + E+++ + + A + R M
Sbjct: 168 TFVRGLRAGHPIAAALDLLTKEMRD---PIGSEFGIVVDEVTYGSDLRDALQRMAERWDM 224
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMI--IFF 306
+ + +L G ++ + L L + R + + +A S ++T M+ +
Sbjct: 225 NEMHMFVISLSVQSETGGNLAEILENLSTVIRERASLFMKVRALSSEGRMTAVMLTALPI 284
Query: 307 LPVLILVIIGPAI 319
L + L ++ PA
Sbjct: 285 LAFVGLFLVNPAF 297
>gi|295690794|ref|YP_003594487.1| type II secretion system F domain-containing protein [Caulobacter
segnis ATCC 21756]
gi|295432697|gb|ADG11869.1| Type II secretion system F domain protein [Caulobacter segnis ATCC
21756]
Length = 325
Score = 106 bits (265), Expect = 4e-21, Method: Composition-based stats.
Identities = 59/315 (18%), Positives = 126/315 (40%), Gaps = 26/315 (8%)
Query: 14 LAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLR 73
+ + ++I L +A V + + KR + + K+ ++
Sbjct: 4 ILAGVLGFITIAGLGFAFVGDDSQASKAAKRAQVIGAG------GVDRQAAKNKPAANPN 57
Query: 74 TRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGII 133
+++ +K+ K +I +++AAG L ++ + L V +I ++L +
Sbjct: 58 EVRRQTILKALKEQERKQKKATLSIAARMQAAGLGPNVRLFWMVSLGLAVGVILIVLAL- 116
Query: 134 WIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLIC 193
Q A+ G P +S L Q R A+ DA+D+++
Sbjct: 117 ------------GQTVWIALGAGFAAGLGLPRWLLSILAQGRIRKFTEAFSDAIDIIVRG 164
Query: 194 VESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRN 253
++SG+ + LR + ++ PL+ E + ++ A + + R + +R
Sbjct: 165 IKSGLPLHDCLRIIGQE---SPEPLAGEFRMLTENVAMGVPLDAALDKMHERMPTNELRF 221
Query: 254 ATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILV 313
L + G ++ ++L L + RS ++M+ + KA S + +II LP ++V
Sbjct: 222 FAIVLAIQQKTGGNLAEALGNLSTVLRSRKMMKEKIKALSAEAVASA-LIIGALPPGVIV 280
Query: 314 II---GPAILSIIDT 325
+I PA + + T
Sbjct: 281 LISVTSPAYMQPLFT 295
>gi|254420696|ref|ZP_05034420.1| Bacterial type II secretion system protein F domain [Brevundimonas
sp. BAL3]
gi|196186873|gb|EDX81849.1| Bacterial type II secretion system protein F domain [Brevundimonas
sp. BAL3]
Length = 326
Score = 106 bits (265), Expect = 4e-21, Method: Composition-based stats.
Identities = 50/317 (15%), Positives = 120/317 (37%), Gaps = 27/317 (8%)
Query: 15 AVAITTAVSIFSLIYAVVIPSLGSG----ELEKRMKSVAVEREILRKQQITSLQKDSASS 70
+ I AV F I + +G + KR +++ + K + + ++ +
Sbjct: 1 MLPILAAVLAFITIGGLGWVFVGGDDSSGQAVKRAQNLGEGKRNAAKARKAAAAANTPEA 60
Query: 71 RLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLIL 130
R + + +++ + N+ KL+ AG S+ +V V +I +
Sbjct: 61 RRKQIMVQ-----LQEAERRERKARANMAAKLKQAGL--TISVRTFYIVSGGVGLIAAVA 113
Query: 131 GIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLL 190
+ + + + L VG P + L + R +P+A+D++
Sbjct: 114 ALAFGLHV-----------LIVLGLAIVVGLGLPRWIVGFLAKARMKKFSLEFPNAVDVI 162
Query: 191 LICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDC 250
+ ++SG+ + + + +A + PL + L + A + + +
Sbjct: 163 VRGIKSGLPVHECFKIIARE---SPAPLGPAFKKLVEALGVGMTLEQALDKMFEQMPTPE 219
Query: 251 VRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVL 310
+R T + + G ++ ++L L + R+ R+M + KA S + +I P +
Sbjct: 220 LRFFTIVIAIQQKTGGNLAEALSNLSTVLRARRMMREKVKALSSEALASAGIIASLPPAV 279
Query: 311 ILVIIG--PAILSIIDT 325
+ +++ P + + T
Sbjct: 280 MTMVMFTSPGYMMALFT 296
>gi|150398545|ref|YP_001329012.1| type II secretion system protein [Sinorhizobium medicae WSM419]
gi|150030060|gb|ABR62177.1| type II secretion system protein [Sinorhizobium medicae WSM419]
Length = 336
Score = 106 bits (265), Expect = 5e-21, Method: Composition-based stats.
Identities = 49/275 (17%), Positives = 105/275 (38%), Gaps = 18/275 (6%)
Query: 53 EILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYS 112
E R + + + + S+ R SL+ KK K+ ++ +L A +
Sbjct: 48 ETDRTKIKAARDRVNEMSKRRKSVQDSLKELEKKQQEKSANSAPSMKKRLLQANLSISVA 107
Query: 113 LNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLV 172
L +F + + +F + + A P + + +
Sbjct: 108 QFYLFSA------LFGLFTFVVVFLAGAGALIAAGVGLTAAAG-------LPRWIVGSRI 154
Query: 173 QKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFL 232
++R +P+ALD+++ ++SG+ ++ ALR +A D P+ E +
Sbjct: 155 KRRCRKFLDEFPNALDVMVRSIKSGLPLNDALRLIASDGQE---PVRTEFRRVVESQQVG 211
Query: 233 PNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAA 292
N A + + V + + G ++ ++L L R R M+A+ A
Sbjct: 212 LNVPEACARMIHSIPLPEVNFFAIVIAIQAQAGGNLSEALGNLSKVLRERRKMKAKVNAL 271
Query: 293 SLGPKLTVPMI--IFFLPVLILVIIGPAILSIIDT 325
S+ K + +I + F+ ++ + PA ++I+ T
Sbjct: 272 SMEAKASACIIGALPFIVATLVYLTSPAYMAILFT 306
>gi|307318084|ref|ZP_07597520.1| Type II secretion system F domain protein [Sinorhizobium meliloti
AK83]
gi|306896125|gb|EFN26875.1| Type II secretion system F domain protein [Sinorhizobium meliloti
AK83]
Length = 333
Score = 106 bits (265), Expect = 5e-21, Method: Composition-based stats.
Identities = 53/315 (16%), Positives = 115/315 (36%), Gaps = 21/315 (6%)
Query: 13 ELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRL 72
+ V + + SI ++ A P + ++ ER R + S ++
Sbjct: 8 PVFVFLLASTSIGGMMVAAFYPRVSKASAYRQR----FERISARAEDKRSEPAETDGRDR 63
Query: 73 RTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGI 132
R K+LR +K A + +LR +G FL+
Sbjct: 64 RRSVEKTLREIEEKRQANARKGKVTLSARLRQSGLHWSRKAY------------FLVCAG 111
Query: 133 IWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLI 192
+ + +L + +V G P ++++ R + +P+A+D+++
Sbjct: 112 AALATWVVMLLLLGLGPLVSVGFAIAGGLLLPHLYVNMKRNARFTRFAAEFPNAVDVIVR 171
Query: 193 CVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVR 252
+++G+ + LR +A + P+ E L + + + A + R +
Sbjct: 172 GLKAGLPMPDCLRVIAMEAQE---PVKGEFLAIVQDQTLGIPVDEAVKRMSERMPLAEAN 228
Query: 253 NATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMI--IFFLPVL 310
+ R G S+ ++L L R + M+ + KA S K + +I + FL
Sbjct: 229 FFAIVVAIQSRTGGSLSEALGNLSKVLRERKKMKGKIKAMSSEAKSSAGIIGALPFLVAG 288
Query: 311 ILVIIGPAILSIIDT 325
+ + P ++++ T
Sbjct: 289 AVYFMSPDYMALLFT 303
>gi|163733538|ref|ZP_02140981.1| type II secretion system protein, putative [Roseobacter litoralis
Och 149]
gi|161393326|gb|EDQ17652.1| type II secretion system protein, putative [Roseobacter litoralis
Och 149]
Length = 320
Score = 106 bits (265), Expect = 5e-21, Method: Composition-based stats.
Identities = 62/320 (19%), Positives = 128/320 (40%), Gaps = 31/320 (9%)
Query: 11 ATELAVAITTAVSIFSLIYAVVIPSLGSG-ELEKRMKSVAVEREILRKQQITSLQKDSAS 69
+ E + + + L+ + + + G L R V E+L K +D
Sbjct: 2 SPEPIIYGLIFIGVLVLVEGLYLVTFGKSISLNSR---VNRRLEMLDK----GTGRDEVL 54
Query: 70 SRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLI 129
+LR + +++ K + L ++L G +++ + +LV+ I +
Sbjct: 55 EKLRKEMQQHMKS--KSIPLYSLL------------GEKAQKAAIAFTPSQLVM--IMGV 98
Query: 130 LGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDL 189
L ++ G E +R+ I IG W+S+ KR + I+ PDA++L
Sbjct: 99 LAVVAFLGLSVGTESSLPVRIMMSIGIGVGAVY---FWVSSKANKRLAMIEEQLPDAVEL 155
Query: 190 LLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMD 249
++ + G A++ V++++ PL+ EM + E ++ + A + R M
Sbjct: 156 MVRSLRVGHPFSSAVQIVSKEVQD---PLASEMGVIADESAYGRDVGDALKEMAERLDMQ 212
Query: 250 CVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPV 309
+R A+ G ++ + L L R+ + KA + K + + PV
Sbjct: 213 DLRFLAVAVNIQQTSGGNLAEILAGLAKVIRARFRLFRRVKAITAEAKWSGK-FLSAFPV 271
Query: 310 LILVIIGPAILSIIDTMKDH 329
+ L++I + D ++DH
Sbjct: 272 VALIVINVGDPNYYDAVRDH 291
>gi|121534345|ref|ZP_01666169.1| type II secretion system protein [Thermosinus carboxydivorans Nor1]
gi|121307115|gb|EAX48033.1| type II secretion system protein [Thermosinus carboxydivorans Nor1]
Length = 324
Score = 106 bits (265), Expect = 5e-21, Method: Composition-based stats.
Identities = 43/231 (18%), Positives = 94/231 (40%), Gaps = 20/231 (8%)
Query: 98 IVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIG 157
+ ++L AG + LV+ ++ ++ I G R ++
Sbjct: 81 LEHRLMQAGLPLRG--SEFLVICTGSALVGMLTLFILARG-----------RPIFAVIGA 127
Query: 158 YVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVP 217
+G+ P + + V++R + DAL L+ + +G S Q++ V+ ++ P
Sbjct: 128 IIGYLVPLLVLRVKVERRTKAFNDQLGDALILIANSLRTGYSFLQSIEMVSREM---LPP 184
Query: 218 LSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVS 277
++ E + E++ + A N R D + A++ + G ++ + L +
Sbjct: 185 IATEFARVLREMNLGVTTEEALNNLAKRVDSDDLDLVVTAVLIQRQVGGNLAEVLENIAG 244
Query: 278 ETRSERLMEAEKKAASLGPKLTVPMIIFFLPV---LILVIIGPAILSIIDT 325
RS ++ E K + +++ II LPV L++ + P + I+ T
Sbjct: 245 TIRSRIKIKGEIKTLTAQGRISGV-IIGLLPVALGLVIYALNPGYMQILFT 294
>gi|307294431|ref|ZP_07574275.1| Type II secretion system F domain protein [Sphingobium
chlorophenolicum L-1]
gi|306880582|gb|EFN11799.1| Type II secretion system F domain protein [Sphingobium
chlorophenolicum L-1]
Length = 333
Score = 106 bits (264), Expect = 6e-21, Method: Composition-based stats.
Identities = 55/309 (17%), Positives = 120/309 (38%), Gaps = 20/309 (6%)
Query: 13 ELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRL 72
L V I ++ LI + ++ V R K ++ + S+L
Sbjct: 7 RLFVLILLFAAVILLIEGIAGWLRARATTDR----VVNRRL---KMIAAGFERSTVLSKL 59
Query: 73 RTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGI 132
R D + + ++ L AG + +L+ + + ++FL+
Sbjct: 60 RRSDEAVSFDRSTLFGRAGL----GVMRVLHGAGLTFP-ARTVLMAMLIATGLLFLM--- 111
Query: 133 IWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLI 192
+ I G + V A G +G P + ++ L Q+R+ ++ +P ALD +
Sbjct: 112 VMIGGMAAGYALTAGMFVMAAAFAGALGIMLPMMVLTRLAQRRRKKMEEQFPVALDTFVR 171
Query: 193 CVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVR 252
+ +G I AL + +++ P+ E + + E+++ + + A + R M+ +
Sbjct: 172 GLRAGHPIAAALDLLTKEMRD---PIGSEFGIVVDEVTYGADLRDALQRMAERWDMNEMH 228
Query: 253 NATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMI--IFFLPVL 310
+L G ++ + L L + R + + +A S ++T M+ + L +
Sbjct: 229 MFVISLSVQSETGGNLAEILENLSAVIRERASLFMKVRALSSEGRMTAVMLTALPILAFV 288
Query: 311 ILVIIGPAI 319
L ++ PA
Sbjct: 289 GLFLVNPAF 297
>gi|320161468|ref|YP_004174692.1| putative bacterial type II secretion system protein [Anaerolinea
thermophila UNI-1]
gi|319995321|dbj|BAJ64092.1| putative bacterial type II secretion system protein [Anaerolinea
thermophila UNI-1]
Length = 323
Score = 106 bits (264), Expect = 7e-21, Method: Composition-based stats.
Identities = 57/305 (18%), Positives = 117/305 (38%), Gaps = 36/305 (11%)
Query: 13 ELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRL 72
L + I AV++ LI +V+ S+ ER ++ ++ + + A +
Sbjct: 5 TLILIIGGAVAVIMLIVGIVV-------------SITSERSLVEER-LGRYIETPAPVKE 50
Query: 73 RTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGI 132
R + K++ + ENI +L A + + I L++ I ++G
Sbjct: 51 RQTQAPVTEWLNKQVAGSSFG--ENIARELARADIKLKAGEYIALMI-----ISAFLVGF 103
Query: 133 IWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLI 192
++ F DK + + +G P ++ + KR PD L+L++
Sbjct: 104 VFYFLGDK--------NMLVGLAGAAIGLFLPRFYVKSQQAKRLVKFNEQLPDMLNLMVN 155
Query: 193 CVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVR 252
+ +G S QA+ V++++ P+ +E + E+ Q A +N R D +
Sbjct: 156 GLRAGYSTMQAMEAVSKEL---PPPICDEFRRVVQEMQLGVPMQQALDNLLRRIPSDDLD 212
Query: 253 NATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGP----KLTVPMIIFFLP 308
A+ G ++ + L + R ++ E + + + M IF +
Sbjct: 213 LVVTAINVQREVGGNLAEILDTISFTIRERVRIKGEIRVLTTQVMYSGRFLAMMPIFVMG 272
Query: 309 VLILV 313
VL L+
Sbjct: 273 VLYLL 277
>gi|84501672|ref|ZP_00999844.1| type II/IV secretion system protein, TadC subfamily protein
[Oceanicola batsensis HTCC2597]
gi|84390293|gb|EAQ02852.1| type II/IV secretion system protein, TadC subfamily protein
[Oceanicola batsensis HTCC2597]
Length = 322
Score = 106 bits (264), Expect = 7e-21, Method: Composition-based stats.
Identities = 56/309 (18%), Positives = 124/309 (40%), Gaps = 31/309 (10%)
Query: 8 LFDATELAVAITTAVSIFSLIYAVVIPSLGSG-ELEKRMKSVAVEREILRKQQITSLQKD 66
+ + E + I V + +L+ + + + G L KR V E+L K S ++
Sbjct: 1 MAVSPEPIIFIVIFVGVLALVEGIYLVAFGKSISLNKR---VNRRLEMLDK----SGNRE 53
Query: 67 SASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPII 126
+LR + + +K+ L ++L D +++ + +LV+ +
Sbjct: 54 EVLEKLRKEMQQHM--TAQKVPLYSLLAD------------KAQKAAIAFSPKQLVMLMF 99
Query: 127 FLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDA 186
L P + + I +G + F W+++ +KR S I+ PDA
Sbjct: 100 GLSFVAFSGLTILTDTSLPLRAVLSTAIGVGAIYF-----WVNSKAKKRMSLIEEQLPDA 154
Query: 187 LDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRT 246
++L++ + G A++ V+ ++ PL E + E ++ + A ++ R
Sbjct: 155 VELMVRSLRVGHPFSSAIQIVSREVAD---PLGSEFGIIADENAYGRDMGEALKDLAERI 211
Query: 247 QMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFF 306
+ +R A+ + G ++ + L L + R+ + KA + + + M +
Sbjct: 212 GLQDLRFLAVAVTIQQQSGGNLAEILAGLANVIRARFRLFRRVKAITAEAQWSG-MFLSA 270
Query: 307 LPVLILVII 315
P++ L+ I
Sbjct: 271 FPIVALIAI 279
>gi|16263304|ref|NP_436097.1| Pilus assembly protein [Sinorhizobium meliloti 1021]
gi|307304377|ref|ZP_07584128.1| Type II secretion system F domain protein [Sinorhizobium meliloti
BL225C]
gi|14523983|gb|AAK65509.1| Pilus assembly protein [Sinorhizobium meliloti 1021]
gi|306902579|gb|EFN33173.1| Type II secretion system F domain protein [Sinorhizobium meliloti
BL225C]
Length = 333
Score = 105 bits (263), Expect = 8e-21, Method: Composition-based stats.
Identities = 53/315 (16%), Positives = 115/315 (36%), Gaps = 21/315 (6%)
Query: 13 ELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRL 72
+ V + + SI ++ A P + ++ ER R + S ++
Sbjct: 8 PVFVFLLASTSIGGMMVAAFYPRVSKASAYRQR----FERISARAEDKRSEPAETDGRDR 63
Query: 73 RTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGI 132
R K+LR +K A + +LR +G FL+
Sbjct: 64 RRSVEKTLREIEEKRQANARKGKVTLSARLRQSGLHWSRKAY------------FLVCAG 111
Query: 133 IWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLI 192
+ + +L + +V G P ++++ R + +P+A+D+++
Sbjct: 112 ATLATWVVMLLLLGLGPLVSVGFAIAGGLLLPHLYVNMKRNARFTRFAAEFPNAVDVIVR 171
Query: 193 CVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVR 252
+++G+ + LR +A + P+ E L + + + A + R +
Sbjct: 172 GLKAGLPMPDCLRVIAMEAQE---PVKGEFLAIVQDQTLGIPVDEAVKRMSERMPLAEAN 228
Query: 253 NATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMI--IFFLPVL 310
+ R G S+ ++L L R + M+ + KA S K + +I + FL
Sbjct: 229 FFAIVVAIQSRTGGSLSEALGNLSKVLRERKKMKGKIKAMSSEAKSSAGIIGALPFLVAG 288
Query: 311 ILVIIGPAILSIIDT 325
+ + P ++++ T
Sbjct: 289 AVYFMSPDYMALLFT 303
>gi|114568974|ref|YP_755654.1| type II secretion system protein [Maricaulis maris MCS10]
gi|114339436|gb|ABI64716.1| type II secretion system protein [Maricaulis maris MCS10]
Length = 327
Score = 105 bits (263), Expect = 8e-21, Method: Composition-based stats.
Identities = 48/287 (16%), Positives = 113/287 (39%), Gaps = 23/287 (8%)
Query: 42 EKRM-KSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVN 100
+KRM ++V ++Q ++L + + R K L + K++ +I
Sbjct: 31 KKRMNRAVGTGGLQRGRRQTSALDQAAQRKRQVQESLKDLEQRQRDQRKKSL----SIKA 86
Query: 101 KLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVG 160
+++ AG ++ + +V + L++ I Q + + G
Sbjct: 87 RIQQAGMS--FTPAVFWMVSAGMAAAGLLIAFI-----------TGQSLLVTAGIGLVSG 133
Query: 161 FCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSE 220
P W+ L +RQ + +ALD++ V+SG+ +++ L+ ++ + P+
Sbjct: 134 LGMPRWWLGFLRGRRQKQFSGEFANALDVITRGVKSGLPLNECLKILSVE---SPEPVKT 190
Query: 221 EMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETR 280
E + ++ + + R + + LI + G ++ ++L L R
Sbjct: 191 EFAKLVEGIAVGVSLPDGLDRMCERMPLPELNFFRTVLIIQQKTGGNLAETLGNLSVVLR 250
Query: 281 SERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIG--PAILSIIDT 325
S ++M + A S K + +I P ++ ++ P+ + + T
Sbjct: 251 SRKMMREKIGALSSEAKSSAAIIGSLPPGVMGIVYATTPSYMGQMFT 297
>gi|323700364|ref|ZP_08112276.1| Type II secretion system F domain [Desulfovibrio sp. ND132]
gi|323460296|gb|EGB16161.1| Type II secretion system F domain [Desulfovibrio desulfuricans
ND132]
Length = 324
Score = 105 bits (263), Expect = 8e-21, Method: Composition-based stats.
Identities = 51/306 (16%), Positives = 124/306 (40%), Gaps = 27/306 (8%)
Query: 11 ATELAVAITTAVSIFSLIYAVVIPS-LGSGELEKRMKSVAVEREILRKQQITSLQKDSAS 69
+ L +A + +F L+ + GS + E+R+K + LR +T+ ++
Sbjct: 2 SMTLIIAAAAVLIVFLLVMGIGSLMQSGSDKAERRVK------DRLRAMALTADIDAASV 55
Query: 70 SRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLI 129
+ + S +L L+++ N+ L A ++ S + L++ +++ +I
Sbjct: 56 DLVLREAAMSEVPLFNRL-LESMRWSSNLSRLLYQA--DAKGSPGVYLLLCMLLAVIGFY 112
Query: 130 LGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDL 189
G F ++ + + P + +KR ++ P+ALDL
Sbjct: 113 AG-------------SFSGKIWVSLAGAIMLGYLPIWILQGKKRKRMDRFQKQLPEALDL 159
Query: 190 LLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMD 249
+ +++G + +R VA++ G P+ E T+ E+++ + A N +R
Sbjct: 160 MARALKAGHTFGGGMRMVADEFDG---PIGPEFGKTLDEINYGMDVDRALSNLQSRVDCP 216
Query: 250 CVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPV 309
++ ++ G ++ + + + + R + + + S +++ I+ LP
Sbjct: 217 DLKFFVVSVNIQRETGGNLAEIIAKIAALVRERFALFGKIRVLSAEGRVSA-YILIALPF 275
Query: 310 LILVII 315
L+ I+
Sbjct: 276 LLTGIL 281
>gi|253580448|ref|ZP_04857713.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
gi|251848178|gb|EES76143.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
Length = 348
Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats.
Identities = 39/190 (20%), Positives = 80/190 (42%), Gaps = 6/190 (3%)
Query: 138 YDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESG 197
++ + L G ++ +QKR + +P + + V++G
Sbjct: 156 WESPADTSGMLLTGLFLIAAMAILVMKGREEQVQLQKRYEELLMDYPGLIMKFTLLVQAG 215
Query: 198 ISIDQALRRVAEDIGGQ----SVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRN 253
+++ +A ++++ D G + P EE+ + E+ + A+ F R +
Sbjct: 216 MTVRKAFQKISLDYGRKRKRNPRPAYEEIRIVCYEMESGVSESEAYRRFGERCGQAKYKT 275
Query: 254 ATQALIQSDRYGTS-IGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLIL 312
LIQ+ + G+ + D L +E ER +A + KL VPMI+ L V++
Sbjct: 276 FATLLIQNLQKGSRQMADMLERESTEAWEERKRKARVLGEAAATKLLVPMIM-MLIVVMA 334
Query: 313 VIIGPAILSI 322
+++ PA +S
Sbjct: 335 IVMIPAFMSF 344
>gi|86355868|ref|YP_467760.1| pilus assembly protein [Rhizobium etli CFN 42]
gi|86279970|gb|ABC89033.1| probable pilus assembly protein [Rhizobium etli CFN 42]
Length = 335
Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats.
Identities = 47/275 (17%), Positives = 107/275 (38%), Gaps = 19/275 (6%)
Query: 53 EILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYS 112
E+ R + + + S+ R +L++ K+ N K + ++L AG +
Sbjct: 48 EVDRAKVKAARDRVQEMSKRRKSVQDNLKDLEKRQNEKTKKTLS-MKSRLVQAGL--TVT 104
Query: 113 LNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLV 172
L + + + L + I + + + G P I L+
Sbjct: 105 LTQFYLFSAIFASVLLFMAFII-----------GASWLVMIGIAFVAGLGLPRWVIGFLI 153
Query: 173 QKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFL 232
++RQ+ +P+ALD++ ++SG+ ++ A+R +A + + P+ E I
Sbjct: 154 KRRQNKFLNEFPNALDVITRSIKSGLPLNDAIRLIATE---GTEPVKSEFRRVIEAQQVG 210
Query: 233 PNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAA 292
+ A + V + + G ++ +++ L R R M+A+ A
Sbjct: 211 LSIPDACARMTLHMPLQEVNFFAIVIAIQSQAGGNLSEAIGNLSKVLRERRKMKAKVSAL 270
Query: 293 SLGPKLTVPMI--IFFLPVLILVIIGPAILSIIDT 325
S+ K + +I + F+ ++ + P + ++ T
Sbjct: 271 SMEAKASAVIIGALPFIVATLVYLTSPNYMIVLFT 305
>gi|99082190|ref|YP_614344.1| type II secretion system protein [Ruegeria sp. TM1040]
gi|99038470|gb|ABF65082.1| hypothetical protein TM1040_2350 [Ruegeria sp. TM1040]
Length = 322
Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats.
Identities = 42/284 (14%), Positives = 105/284 (36%), Gaps = 30/284 (10%)
Query: 15 AVAITTAVSIFSLIYAVVIPSLGSG-ELEKRMKSVAVEREILRKQQITSLQKDSASSRLR 73
+ + + L+ + + + G L R+ +++ L+K ++
Sbjct: 8 LIYGLIFIGVLVLVEGIYLVAFGKSISLNSRV-----------NRRLEMLEKGGNREQVL 56
Query: 74 TRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGII 133
+ K ++ +K ++ + K + ++L++ + L
Sbjct: 57 EQLRKEMQQHLKSQSIPLYSLLAEKAQK----------AAIAFTPIQLILVMCGLTGVAF 106
Query: 134 WIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLIC 193
P ++ +I +G V F W+++ +KR + I+ PD ++L++
Sbjct: 107 IGLSVGTQAALPVRVLGSVIIGVGAVFF-----WVNSKAKKRMAKIEEQLPDGVELMVRS 161
Query: 194 VESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRN 253
+ G A++ VA+++ PL+ E + E ++ + A + R M +R
Sbjct: 162 LRVGHPFSSAVQIVAKEVED---PLATEFGIIADECAYGRDVGEALKEMAERLDMQDLRF 218
Query: 254 ATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPK 297
A+ + G ++ + L L R+ + KA + +
Sbjct: 219 LAVAVTIQQQSGGNLAEVLAGLAKVIRARFRLFRRVKAITAEAQ 262
>gi|25029119|ref|NP_739173.1| hypothetical protein CE2563 [Corynebacterium efficiens YS-314]
gi|259505885|ref|ZP_05748787.1| bacterial type II secretion system protein F domain protein
[Corynebacterium efficiens YS-314]
gi|23494406|dbj|BAC19373.1| hypothetical protein [Corynebacterium efficiens YS-314]
gi|259166559|gb|EEW51113.1| bacterial type II secretion system protein F domain protein
[Corynebacterium efficiens YS-314]
Length = 94
Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats.
Identities = 34/90 (37%), Positives = 52/90 (57%)
Query: 239 FENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKL 298
+ RT + +R +A++Q+D YG SI D LR E R +R AE+KA L K+
Sbjct: 4 LDGLATRTTVPDLRRFVRAVVQADAYGISIADVLRTQADEMRLKRRQRAEEKAQKLPVKV 63
Query: 299 TVPMIIFFLPVLILVIIGPAILSIIDTMKD 328
P+++ LPVL +V++GPA +SI+D
Sbjct: 64 LAPVMLCILPVLFIVVMGPAAMSIVDAFSG 93
>gi|302335344|ref|YP_003800551.1| Type II secretion system F domain protein [Olsenella uli DSM 7084]
gi|301319184|gb|ADK67671.1| Type II secretion system F domain protein [Olsenella uli DSM 7084]
Length = 213
Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats.
Identities = 27/153 (17%), Positives = 68/153 (44%), Gaps = 4/153 (2%)
Query: 168 ISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIA 227
++ ++ +SS P LD++ + + +G+S D +L ++ LS E +
Sbjct: 57 LAARSRELRSSCLSELPTMLDVVNLGLSAGLSFDASLELYCDNYET---ELSSEFGGALL 113
Query: 228 ELSFL-PNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLME 286
R A R + +R + +++Q+ +G+ + + L R E+ +
Sbjct: 114 SWRVGAVGRGDALLGLAERLDLAALRTFSTSVVQALEFGSPLAEVLERQSEVIREEQRSQ 173
Query: 287 AEKKAASLGPKLTVPMIIFFLPVLILVIIGPAI 319
E++ + ++ +P+ +P +++ I+GP +
Sbjct: 174 VEEEIEKVPVRMLIPLGTLIVPAMLVAILGPLV 206
>gi|218461009|ref|ZP_03501100.1| probable pilus assembly protein [Rhizobium etli Kim 5]
gi|218662450|ref|ZP_03518380.1| probable pilus assembly protein [Rhizobium etli IE4771]
Length = 335
Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats.
Identities = 48/287 (16%), Positives = 116/287 (40%), Gaps = 23/287 (8%)
Query: 46 KSVAVEREILRKQQITSLQKDSASSRLRT--RDSKSLRNFVKKLNLKAILVDENI---VN 100
K A ++ ++ ++ +A R++ + KS+++ +K L + +
Sbjct: 35 KKSASRINRVKSAEVDRVKVKAARDRVQELSKRRKSVQDNLKDLEKRQHEKTRKTLSMKS 94
Query: 101 KLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVG 160
+L AG S+ ++ + + LI+ I + + + +G ++ G
Sbjct: 95 RLLQAGL--PISVGKFYLISAIFASVLLIVAFI--------VGASWMVMIGIAVVA---G 141
Query: 161 FCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSE 220
P + L+++RQ+ P+ALD++ ++SG+ ++ A+R + + + P+
Sbjct: 142 LGLPRWVLGFLIKRRQNKFLNELPNALDVITRSIKSGLPLNDAIRLIGTE---GTEPVKS 198
Query: 221 EMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETR 280
E I + A + V + + G ++ +++ L R
Sbjct: 199 EFRRIIEAQQVGLSIPDACARMTLHMPLQEVNFFAIVIAIQSQAGGNLSEAIGNLSKVLR 258
Query: 281 SERLMEAEKKAASLGPKLTVPMI--IFFLPVLILVIIGPAILSIIDT 325
R M+A+ A S+ K + +I + F+ ++ + P + I+ T
Sbjct: 259 ERRKMKAKVSALSMEAKASAVIIGALPFIVATLVYLTSPNYMMILFT 305
>gi|218530658|ref|YP_002421474.1| type II secretion system protein [Methylobacterium chloromethanicum
CM4]
gi|218522961|gb|ACK83546.1| type II secretion system protein [Methylobacterium chloromethanicum
CM4]
Length = 323
Score = 104 bits (261), Expect = 1e-20, Method: Composition-based stats.
Identities = 56/285 (19%), Positives = 111/285 (38%), Gaps = 27/285 (9%)
Query: 19 TTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSK 78
AV+ SL Y ++P+L A +R Q L + A++ R + +K
Sbjct: 12 LVAVAAGSLAYVFLMPALSGERR-------AEQRRRALGQPQAVLAERGAAASRREQVAK 64
Query: 79 SLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGY 138
SL+ L K + +L AG ++S VV + ++ + +
Sbjct: 65 SLKE----LEAKKDKTKVTLELRLARAGL--DWSRQKYRVVSAITAVVLALAAFLVSHNV 118
Query: 139 DKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGI 198
+ A + + GF P+ W+ ++R + P+A+D+++ + SGI
Sbjct: 119 -----------IVAGLALFVGGFGLPAWWLKRRQKRRVEAFIEELPNAMDVVVRGLRSGI 167
Query: 199 SIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQAL 258
+ LR +A + PL E +T+ + + A Y R + V + +
Sbjct: 168 PLGDCLRMIAREAKE---PLRSEFRVTMESQALGLSMSDAILRMYERVPVTEVNFFSIVI 224
Query: 259 IQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMI 303
+ G ++ ++L L R + M + +A S+ K + +I
Sbjct: 225 GIQQKAGGNLSEALGNLSRVLRERKKMAGKIQAMSMEAKASAAII 269
>gi|153008063|ref|YP_001369278.1| type II secretion system protein [Ochrobactrum anthropi ATCC 49188]
gi|151559951|gb|ABS13449.1| type II secretion system protein [Ochrobactrum anthropi ATCC 49188]
Length = 337
Score = 104 bits (261), Expect = 1e-20, Method: Composition-based stats.
Identities = 48/319 (15%), Positives = 117/319 (36%), Gaps = 21/319 (6%)
Query: 11 ATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASS 70
A+ + + V+ +L YA+ LG + R R + +++
Sbjct: 6 ASIVMFIVLAVVACAALFYALFYEKLGKKDHAARRFETVRNSGSERAITRSERDRNADIQ 65
Query: 71 RLRTRDSKSLRNFVKKLNLKAILVD-ENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLI 129
+ R + ++++ + + + L AG +L + V +
Sbjct: 66 KRRKQLQDNIKDLEARQKQREKNQKYPPLRILLAQAGLS--LTLQKFYIYSGVAAFLATF 123
Query: 130 LGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDL 189
+ +I+ L + + + G+ G P ++ ++R +P+ALD+
Sbjct: 124 IALIF---------GAPLLFLPGIAIAGFFG--LPRWFVLQKRKRRLKKFLEEFPNALDV 172
Query: 190 LLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMD 249
++ +G+ ++ LR +A + P+ E + + A +
Sbjct: 173 IVRATRAGLPLNDGLRLIASE---AVEPVKSEFKKVVEAQQIGLSIPEAVGKMPDSMPCP 229
Query: 250 CVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPV 309
+ + G ++ ++L L R + M+A+ A S+ K + II LP
Sbjct: 230 ETNFFAIVIQIQAQAGGNLSEALNNLSKVLRDRKKMKAKVDALSMEAKASAA-IIGALPF 288
Query: 310 LILVIIG---PAILSIIDT 325
+++V++ P ++++ T
Sbjct: 289 IVMVLVYLTSPQYMTLLFT 307
>gi|103486614|ref|YP_616175.1| type II secretion system protein [Sphingopyxis alaskensis RB2256]
gi|98976691|gb|ABF52842.1| type II secretion system protein [Sphingopyxis alaskensis RB2256]
Length = 310
Score = 104 bits (261), Expect = 1e-20, Method: Composition-based stats.
Identities = 46/289 (15%), Positives = 114/289 (39%), Gaps = 25/289 (8%)
Query: 27 LIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKK 86
+ A+++ +G+ + R ++ +R + + + Q + R + SL + + +
Sbjct: 4 AVLAILLQGPSAGKAKSRRLAMVKDRHAASTEAVVAAQMRKTIQSVGRRGNSSLTSLLPR 63
Query: 87 LNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPF 146
E + ++R G ++L + + + ++ +I +P
Sbjct: 64 --------REELEKRIRRTG--KSWTLTQYMFASMGLFVVATGAMLI------VRAPFPM 107
Query: 147 QLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRR 206
VG +I +G P + + ++KR + +PDA+DLL+ + SG+ + + +
Sbjct: 108 AALVGLLISLG-----LPYLVVGMAIKKRVAQFNARFPDAIDLLVRGLRSGLPVTETFQV 162
Query: 207 VAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGT 266
V++++ G P+ EE + + + A + + + G
Sbjct: 163 VSQELPG---PVGEEFKGVVERIRIGNTMEAALQETAEMLGTPEFQFFCITIQIQRETGG 219
Query: 267 SIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVII 315
++ ++L L R M+ + +A S K + I+ LP + ++
Sbjct: 220 NLAETLANLSDVLRKRAQMKLKIRAMSSEAKASA-YIVGALPFFVFGVV 267
>gi|27376546|ref|NP_768075.1| pilus assembly protein [Bradyrhizobium japonicum USDA 110]
gi|27349687|dbj|BAC46700.1| pilus assembly protein [Bradyrhizobium japonicum USDA 110]
Length = 340
Score = 104 bits (261), Expect = 1e-20, Method: Composition-based stats.
Identities = 55/305 (18%), Positives = 117/305 (38%), Gaps = 28/305 (9%)
Query: 24 IFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNF 83
+ + + + P L K+ I R + Q + + R + SL++
Sbjct: 31 VGGIAWVFLYPLLSGER-----KAENRRASIARADAPAAKQTEKSQRSRREQVETSLKDL 85
Query: 84 VKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLE 143
+ + + + +L AG +++ +V VV + + + G
Sbjct: 86 EARRQQEKSVP---LNIRLSQAGL--DWTPQKFWIVSAVVAGVLFVAAMFVGGGLLGGAG 140
Query: 144 YPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQA 203
F G P +S L ++R+S A PDA+D+++ +++G+ + ++
Sbjct: 141 LAFAGGFGL-----------PRWALSFLKKRRESKFLAALPDAVDVIVRGIKAGLPLFES 189
Query: 204 LRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDR 263
++ VA D PL E L I + A Y+R + + +
Sbjct: 190 IKVVAAD---SPEPLRSEFLAIIETQAIGMPLGEACSRLYDRMPLPEANFFGIVISIQQK 246
Query: 264 YGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIG---PAIL 320
G ++ ++L L R + M + +A S+ K + II LP +++ ++ P +
Sbjct: 247 SGGNLSEALGNLSKVLRDRKKMREKIQAMSMEAKASAA-IIGSLPPIVMFLVYLTTPHYI 305
Query: 321 SIIDT 325
S++ T
Sbjct: 306 SLLWT 310
>gi|168069635|ref|XP_001786522.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162661100|gb|EDQ48667.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 200
Score = 104 bits (261), Expect = 1e-20, Method: Composition-based stats.
Identities = 49/199 (24%), Positives = 86/199 (43%), Gaps = 6/199 (3%)
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISN---LVQKRQSSIKRAWPD 185
+L W+ L +I+ G + F P+ I + V KR I +
Sbjct: 1 MLCYSWLMLMLGCLLTLAAGGNTGLIIGGLLAFLLPAATIKDLHTKVDKRDQDITIELAE 60
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQ-SVPLSEEMLLTIAELSFLPNRQVAFENFYN 244
L+ +++ V +G ++ +A+ R A Q PL +E++ I +L + Q +FENF
Sbjct: 61 LLNKIVLLVGAGETVQKAITRCARQKEAQRDHPLYKELIRMIDDLEGGYSFQQSFENFSK 120
Query: 245 RTQMDCVRNATQALIQSDRYGTS-IGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMI 303
R + V T A++ + R G S +L L +R + KL PM+
Sbjct: 121 RCAVQEVSAFTTAVLLNLRRGGSDFAMALNDLSRGLWEKRKAITRTRGEQASSKLVFPMM 180
Query: 304 IFFLPVLILVIIGPAILSI 322
+ F+ V++LV PA + +
Sbjct: 181 VIFMIVIVLV-GTPAFMMM 198
>gi|187927683|ref|YP_001898170.1| type II secretion system protein [Ralstonia pickettii 12J]
gi|187724573|gb|ACD25738.1| type II secretion system protein [Ralstonia pickettii 12J]
Length = 325
Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats.
Identities = 59/315 (18%), Positives = 122/315 (38%), Gaps = 30/315 (9%)
Query: 15 AVAITTAVSIFSLIYAVV-IPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLR 73
A AI ++ I V + G KR V L ++ S +
Sbjct: 7 AFAILLFAAVVLCIEGVYQWWNNYHGPEAKR---VDARIRALSAGGHIGTEQLSILKKRL 63
Query: 74 TRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGII 133
+S + + L ++ I L +G S +S+ LL ++ L +G +
Sbjct: 64 LSESPQFQRW-----LMSLPRVSTIDRWLEQSG--SAWSVAQLLGYTILTGAGVLAVGAL 116
Query: 134 WIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLIC 193
L PF + +L+ P + I++ +KR ++ PDA+D++
Sbjct: 117 --------LPVPFGIVTACALLMSA----LPVLHIASQRRKRLKKLEAQLPDAVDMIARA 164
Query: 194 VESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRN 253
+ +G S AL V ++I P+ E T E+++ + A N R ++ +R
Sbjct: 165 LRAGHSFASALGMVGQEIKE---PMGPEFHTTFEEINYGVSLDEALTNLAKRVPVNDLRY 221
Query: 254 ATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP---VL 310
A++ G ++ + L + + R + + + S +L+ I+ LP
Sbjct: 222 FVIAVLIQRESGGNLAEILDTIGNLVRERLKLYDKIRVLSAEGRLSA-WILGLLPFCTAG 280
Query: 311 ILVIIGPAILSIIDT 325
+++++ P + ++ T
Sbjct: 281 MILLVNPDFMKVLWT 295
>gi|218516696|ref|ZP_03513536.1| probable pilus assembly protein [Rhizobium etli 8C-3]
Length = 335
Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats.
Identities = 47/287 (16%), Positives = 115/287 (40%), Gaps = 23/287 (8%)
Query: 46 KSVAVEREILRKQQITSLQKDSASSRLRT--RDSKSLRNFVKKLNLKAILVDENI---VN 100
K A ++ ++ ++ +A R++ + KS+++ +K L + +
Sbjct: 35 KKSASRINRVKSAEVDRVKVKAARDRVQELSKRRKSVQDNLKDLEKRQHEKTRKTLSMKS 94
Query: 101 KLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVG 160
+L AG S+ ++ V + L + + + + + +G ++ G
Sbjct: 95 RLLQAGL--PISVGKFYLISAVFASVLLFVAFV--------VGASWMVMIGIAVVA---G 141
Query: 161 FCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSE 220
P + L+++RQ+ P+ALD++ ++SG+ ++ A+R + + + P+
Sbjct: 142 LGLPRWVLGFLIKRRQNKFLNELPNALDVITRSIKSGLPLNDAIRLIGTE---GTEPVKS 198
Query: 221 EMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETR 280
E I + A + V + + G ++ +++ L R
Sbjct: 199 EFRRVIEAQQVGLSIPDACARMTLHMPLQEVNFFAIVIAIQSQAGGNLSEAIGNLSKVLR 258
Query: 281 SERLMEAEKKAASLGPKLTVPMI--IFFLPVLILVIIGPAILSIIDT 325
R M+A+ A S+ K + +I + F+ ++ + P + I+ T
Sbjct: 259 ERRKMKAKVSALSMEAKASAVIIGALPFIVATLVYLTSPNYMMILFT 305
>gi|190889885|ref|YP_001976427.1| pilus assembly protein [Rhizobium etli CIAT 652]
gi|190695164|gb|ACE89249.1| probable pilus assembly protein [Rhizobium etli CIAT 652]
gi|327194690|gb|EGE61536.1| putative pilus assembly protein [Rhizobium etli CNPAF512]
Length = 335
Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats.
Identities = 47/287 (16%), Positives = 115/287 (40%), Gaps = 23/287 (8%)
Query: 46 KSVAVEREILRKQQITSLQKDSASSRLRT--RDSKSLRNFVKKLNLKAILVDENI---VN 100
K A ++ ++ ++ +A R++ + KS+++ +K L + +
Sbjct: 35 KKSASRINRVKSAEVDRVKVKAARDRVQELSKRRKSVQDNLKDLEKRQHEKTRKTLSMKS 94
Query: 101 KLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVG 160
+L AG S+ ++ V + L + + + + + +G ++ G
Sbjct: 95 RLLQAGL--PISVGKFYLISAVFASVLLFVAFV--------VGASWMVMIGIAVVA---G 141
Query: 161 FCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSE 220
P + L+++RQ+ P+ALD++ ++SG+ ++ A+R + + + P+
Sbjct: 142 LGLPRWVLGFLIKRRQNKFLNELPNALDVITRSIKSGLPLNDAIRLIGTE---GTEPVKS 198
Query: 221 EMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETR 280
E I + A + V + + G ++ +++ L R
Sbjct: 199 EFRRVIEAQQVGLSIPDACARMTLHMPLQEVNFFAIVIAIQSQAGGNLSEAIGNLSKVLR 258
Query: 281 SERLMEAEKKAASLGPKLTVPMI--IFFLPVLILVIIGPAILSIIDT 325
R M+A+ A S+ K + +I + F+ ++ + P + I+ T
Sbjct: 259 ERRKMKAKVSALSMEAKASAVIIGALPFIVATLVYLTSPNYMMILFT 305
>gi|110679392|ref|YP_682399.1| type II secretion system protein, putative [Roseobacter
denitrificans OCh 114]
gi|109455508|gb|ABG31713.1| type II secretion system protein, putative [Roseobacter
denitrificans OCh 114]
Length = 320
Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats.
Identities = 61/320 (19%), Positives = 127/320 (39%), Gaps = 31/320 (9%)
Query: 11 ATELAVAITTAVSIFSLIYAVVIPSLGSG-ELEKRMKSVAVEREILRKQQITSLQKDSAS 69
+ E + + + L+ + + + G L R V E+L K +D
Sbjct: 2 SPEPIIYGLIFIGVLVLVEGLYLVTFGKSISLNSR---VNRRLEMLDK----GTGRDEVL 54
Query: 70 SRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLI 129
+LR + +++ K + L ++L G +++ + +LV+ I +
Sbjct: 55 EKLRKEMQQHMKS--KSIPLYSLL------------GEKAQKAAIAFTPSQLVM--IMGM 98
Query: 130 LGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDL 189
L ++ G +R+ I IG W+S+ KR + I+ PDA++L
Sbjct: 99 LAVVAFLGLSVGTASSLPVRIMMSIGIGVGAVY---FWVSSKANKRLAMIEEQLPDAVEL 155
Query: 190 LLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMD 249
++ + G A++ V++++ PL+ EM + E ++ + A + R M
Sbjct: 156 MVRSLRVGHPFSSAVQIVSKEVQD---PLASEMGVIADESAYGRDVGDALKEMAERLDMQ 212
Query: 250 CVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPV 309
+R A+ G ++ + L L R+ + KA + K + + PV
Sbjct: 213 DLRFLAVAVNIQQTSGGNLAEILAGLAKVIRARFRLFRRVKAITAEAKWSGK-FLSAFPV 271
Query: 310 LILVIIGPAILSIIDTMKDH 329
+ L++I + D ++DH
Sbjct: 272 VALIVINVGDPNYYDAVRDH 291
>gi|75674495|ref|YP_316916.1| type II secretion system protein [Nitrobacter winogradskyi Nb-255]
gi|74419365|gb|ABA03564.1| type II secretion system protein [Nitrobacter winogradskyi Nb-255]
Length = 324
Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats.
Identities = 60/320 (18%), Positives = 128/320 (40%), Gaps = 29/320 (9%)
Query: 9 FDATELAVAITTAVSIFSLIYAVVIPSLGSG-ELEKRMKSVAVEREILRKQQITSLQKDS 67
+ LA+A A ++ + + + P L + EKR ++A +R+ +
Sbjct: 1 MNLQTLALAFMAATAVGGVAWVFLYPVLSGEMKAEKRRAALARTSPAIRQVDRAQRSR-- 58
Query: 68 ASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIF 127
R + +SLR ++ + + N++ AG +S L+V ++ +
Sbjct: 59 -----REQIEESLREIEQRQKRDRKV---TLNNRIAQAGLS--WSKEKFLIVSGILALAS 108
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
+ I+ G F G P + L ++R+++ RA PDA+
Sbjct: 109 FAVPIVLGAGPLAAAGLAFAAGFGV-----------PRWLLGFLKKRRETAFLRALPDAV 157
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQ 247
D+++ +++G+ + ++L+ VA D PL E I + A Y R
Sbjct: 158 DVIVRGIKAGLPLFESLKVVAAD---SPEPLKSEFAAIIETQAIGMPLGEACSRLYERMP 214
Query: 248 MDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFL 307
+ + + G ++ ++L L R + M + KA S+ K + +I
Sbjct: 215 VPEANFFGIVIAIQQKSGGNLSEALGNLSKVLRDRKKMAEKIKAVSMEAKASAAIIGSLP 274
Query: 308 PVLILV--IIGPAILSIIDT 325
P+++L+ + P ++++ T
Sbjct: 275 PIVMLLVYLSTPDYIALLWT 294
>gi|227494922|ref|ZP_03925238.1| type II secretion system protein [Actinomyces coleocanis DSM 15436]
gi|226831374|gb|EEH63757.1| type II secretion system protein [Actinomyces coleocanis DSM 15436]
Length = 293
Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats.
Identities = 41/242 (16%), Positives = 97/242 (40%), Gaps = 8/242 (3%)
Query: 82 NFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVP-IIFLILGIIWIFGYDK 140
+F+ L +E++ +L G E ++ ++++ L++G+ IFG
Sbjct: 57 DFLTPLWNALGSTNESVRARLETLGNSQE--VSGFRLIQVATATFGALLIGLAIIFGKAG 114
Query: 141 LLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISI 200
L L + ++ ++ V + DA +LL + + +G S+
Sbjct: 115 NLTVLQWLLITSISFTLIT--VGWDKLLTYRVNTFSKKLNSQVADAAELLALVISAGESV 172
Query: 201 DQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQ 260
AL RVA+ ++ ++ + +++ A + N+T ++ L+
Sbjct: 173 PGALNRVAK---VSGPQMASQLESALTQIAQGTAVSKALKTLANKTPSVQLQRLLNTLVS 229
Query: 261 SDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAIL 320
G+S+ + LR + R E L + + +P++ LPV ++ + P ++
Sbjct: 230 GMERGSSLSEILRHQAKDLREESLRNLLESGGRKEIAMLIPVVFLILPVTVIFALYPGLI 289
Query: 321 SI 322
++
Sbjct: 290 AL 291
>gi|329890993|ref|ZP_08269336.1| bacterial type II secretion system protein F domain protein
[Brevundimonas diminuta ATCC 11568]
gi|328846294|gb|EGF95858.1| bacterial type II secretion system protein F domain protein
[Brevundimonas diminuta ATCC 11568]
Length = 327
Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats.
Identities = 45/315 (14%), Positives = 122/315 (38%), Gaps = 23/315 (7%)
Query: 13 ELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRL 72
+ A+ ++I + + +V S + KR K++ R + ++ +R
Sbjct: 4 PILAAVLAFITIGGVGWVLVGGDDSSSQAVKRAKTMGGVRAEAAASAKRAAAANTPEARR 63
Query: 73 RTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGI 132
+ + +++++ + + KL+ AG S+ +++ + ++ +L
Sbjct: 64 KQILLQ-----LQEVDRRERKARMTMGAKLKQAGLS--LSVRTFVIISVAAGLVGALLAF 116
Query: 133 IWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLI 192
+ + + + G P I + R A+ DA+D+L+
Sbjct: 117 VLGANI-----------IIVLGVGVAAGLGLPRWIIGMKAKARMKKFSLAFADAIDILVR 165
Query: 193 CVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVR 252
+++G+ + + +A + PL+ E + + A + Y R ++
Sbjct: 166 GIKTGLPVHDCFKIIARE---SPEPLAGEFRTLVEGMGVGLTLAQALDKMYERMPTPELK 222
Query: 253 NATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLIL 312
+ + G ++ ++L L + R+ R+M + KA S + +I P +++
Sbjct: 223 FFAIVIAIQQKSGGNLAEALGNLTTVLRARRMMVEKIKALSSEAIASAGIIASLPPAVMI 282
Query: 313 VIIG--PAILSIIDT 325
+++ P+ + ++ T
Sbjct: 283 LVMLSNPSYMMLMFT 297
>gi|329847257|ref|ZP_08262285.1| bacterial type II secretion system protein F domain protein
[Asticcacaulis biprosthecum C19]
gi|328842320|gb|EGF91889.1| bacterial type II secretion system protein F domain protein
[Asticcacaulis biprosthecum C19]
Length = 337
Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats.
Identities = 53/307 (17%), Positives = 123/307 (40%), Gaps = 21/307 (6%)
Query: 13 ELAVAITTAVSIFSLIYAVVIPSLGSG-----ELEKRMKSVAVEREILRKQQITSLQKDS 67
L +A V I S+ +A + G L KR +++ + + K+ S K
Sbjct: 4 TLLIAFLGFVVIASVGFAFIGGGGGGNSGGGAALTKRTQTIGLGTNMRGKRGGKSAAKSP 63
Query: 68 ASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIF 127
R K + +K+ + + +++ AG ++ ++ V+ ++
Sbjct: 64 EERR------KQITEQLKEAEKRERKARLTLRSRMLHAGL--TPNVTQFWIITAVLGVVA 115
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
++ ++ + D +L L G + + AP + + R +P+A+
Sbjct: 116 FVVPLVLLGKMDFMLRLLVALGAGFAL-----SYGAPRWVLGMMATGRLKKFTEEFPNAM 170
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQ 247
D+L+ ++SG+ + L+ ++++ PL E L + + + + A E R
Sbjct: 171 DILVRGIKSGLPVHDGLKIISKE---SPAPLGPEFLRLVENVGVGMSVEGALEKMSERIP 227
Query: 248 MDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFL 307
+R T + + G ++ ++L L + R+ ++M + KA S + +I
Sbjct: 228 SPELRFFTIVIAIQAKTGGNLAEALNNLSTVLRARKMMREKIKALSSEAIASASIIGVLP 287
Query: 308 PVLILVI 314
P + ++I
Sbjct: 288 PGVGVMI 294
>gi|221067369|ref|ZP_03543474.1| type II secretion system protein [Comamonas testosteroni KF-1]
gi|220712392|gb|EED67760.1| type II secretion system protein [Comamonas testosteroni KF-1]
Length = 329
Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats.
Identities = 56/270 (20%), Positives = 115/270 (42%), Gaps = 5/270 (1%)
Query: 58 QQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILL 117
+Q S + RLR + + KL + +L D + ++ + R+ +++
Sbjct: 33 KQYKSPEAKRLERRLRALSAADDHSSPTKLVKERVLSDMPRMQRMLQSMPRAHQLDRVIV 92
Query: 118 VVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQS 177
L + L+LGI +F L F L + V+L G V C P +++ +R
Sbjct: 93 QSGLEWTVSGLLLGIGILFFLGALAASMFHLPMELVLLAGAVLGCLPWLYLQRKRNQRLG 152
Query: 178 SIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQV 237
++R P+ALDL+ + +G + L+ E++ S P++ E L E+++ + Q
Sbjct: 153 LLERQIPEALDLIARALRAGHAFSAGLQMAGEEL---SEPIAGEFRLVHDEINYGTSLQQ 209
Query: 238 AFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPK 297
A N R + +R A++ G ++ + L L R + A+ + S +
Sbjct: 210 ALNNLGERIPITDLRYFIVAVLIQRESGGNLTEMLSNLSRLIRERLKLHAKIRVLSSEGR 269
Query: 298 LTVPMIIFFLPVLILVI--IGPAILSIIDT 325
++ ++ L ++ + P +S + T
Sbjct: 270 MSAWILGLMPFALAALLNFVNPEFMSTLWT 299
>gi|254464012|ref|ZP_05077423.1| type II secretion system protein [Rhodobacterales bacterium Y4I]
gi|206684920|gb|EDZ45402.1| type II secretion system protein [Rhodobacterales bacterium Y4I]
Length = 322
Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats.
Identities = 47/287 (16%), Positives = 110/287 (38%), Gaps = 28/287 (9%)
Query: 11 ATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASS 70
+ E + + +L+ + + + G KS+++ + R+ ++ ++K S
Sbjct: 4 SAEPLIYGLIFFGVLALVEGLYLFTFG--------KSISLNSRVNRRLEM--MEKGSNRE 53
Query: 71 RLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLIL 130
++ + K L K ++ + R++ + +L++ I L
Sbjct: 54 QVLEQLRKELGQHAKSQSIPLYSLLSE----------RAQKAAIAFSPKQLIL--IMAGL 101
Query: 131 GIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLL 190
+ G P +R+ ++IG W++ KR + I+ PDA++L+
Sbjct: 102 AALAFVGLSIGTSAPLPVRILGSVIIGVGAVF---FWVNKKAAKRMAMIEEQLPDAVELM 158
Query: 191 LICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDC 250
+ + G A++ VA ++ PL+ E + E ++ + A + R M
Sbjct: 159 VRSLRVGHPFTSAVQIVANEVED---PLATEFGIISDECAYGRDIGEALKEMAERLDMQD 215
Query: 251 VRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPK 297
+R A+ + G ++ + L L R+ + KA + +
Sbjct: 216 MRFLAVAVTIQQQSGGNLAEVLAGLAKVIRARFRLFRRVKAITAEAQ 262
>gi|21673274|ref|NP_661339.1| TadB protein [Chlorobium tepidum TLS]
gi|21646363|gb|AAM71681.1| tadB protein [Chlorobium tepidum TLS]
Length = 305
Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats.
Identities = 36/199 (18%), Positives = 82/199 (41%), Gaps = 10/199 (5%)
Query: 117 LVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQ 176
V+ ++ + ++ + G F L + I P +W+S +KR+
Sbjct: 74 FSAGSVLGLMLALFAVVLLAGLLTKTNILFLLVLAVAIAS------MPVMWLSRKAKKRR 127
Query: 177 SSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQ 236
+ + P+ALD + + +G S+ A+ + ++ PL E E++F +
Sbjct: 128 MAFEAKLPEALDYISRSLRAGHSLSSAIGMIGKEFPD---PLGGEFKTVFDEMNFGIPFK 184
Query: 237 VAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGP 296
AF + NR + + + AL+ G ++ + L L + R + + + S
Sbjct: 185 EAFAHLSNRIRSNDISFFVIALMIQHETGGNLAELLGGLATTIRERFKLRGKVRTLSSEG 244
Query: 297 KLTVPMIIFFLPVLILVII 315
+++ +++ +P + II
Sbjct: 245 RISA-LVLGSMPFVFATII 262
>gi|296444391|ref|ZP_06886356.1| Type II secretion system F domain protein [Methylosinus
trichosporium OB3b]
gi|296258038|gb|EFH05100.1| Type II secretion system F domain protein [Methylosinus
trichosporium OB3b]
Length = 322
Score = 104 bits (259), Expect = 3e-20, Method: Composition-based stats.
Identities = 59/308 (19%), Positives = 125/308 (40%), Gaps = 30/308 (9%)
Query: 9 FDATELAVAITTAVSIFSLIYAVVIPSLGSG-ELEKRMKSVAVEREILRKQQITSLQKDS 67
D L A A+++ ++YAVV P L + +KR ++ + R+ + K
Sbjct: 1 MDRQSLIGATLAALAVGGVMYAVVYPYLSGDFKAQKRTAALMASGDRRREGRSADPAKRR 60
Query: 68 ASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIF 127
K +++ +K + KA + + ++ AG L V R + I
Sbjct: 61 ----------KMIQDSLKDIETKAKQI--TLEQRIAQAG---------LAVSRSLFMIGA 99
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
+ G+ L + P + A+ + VG P + L ++R + A+P ++
Sbjct: 100 GVAGLFAALFSFILNQDP----LLAIGVGVAVGVGLPHWGLGFLARRRVAKFIEAFPGSV 155
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQ 247
D+++ +++G+ + R +A + P+ E + + + A E F R
Sbjct: 156 DIIIRGIKAGLPVGDCFRMIASE---ADEPVRSEFRQIVESQTIGLSIGEATERFAERMP 212
Query: 248 MDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFL 307
+ + + ++ G ++ ++L L R + M+A+ +A S K + II L
Sbjct: 213 VAEASFFSIVISLQEKSGGNLSEALSNLAGVLRERKKMKAKVRAMSAEAKASAG-IIGSL 271
Query: 308 PVLILVII 315
P L+ + +
Sbjct: 272 PFLVGLAV 279
>gi|296122065|ref|YP_003629843.1| type II secretion system protein [Planctomyces limnophilus DSM
3776]
gi|296014405|gb|ADG67644.1| type II secretion system protein [Planctomyces limnophilus DSM
3776]
Length = 285
Score = 103 bits (258), Expect = 3e-20, Method: Composition-based stats.
Identities = 39/193 (20%), Positives = 74/193 (38%), Gaps = 4/193 (2%)
Query: 122 VVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKR 181
+ P I L+L ++ + + Q L VGF P ++ + RQ+ I
Sbjct: 52 ISPGIVLMLCLLGGITVGGFI-FVLQENFLTTALAAVVGFLLPVFFLMYVRSSRQNQILG 110
Query: 182 AWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFEN 241
P L+ L +G S++Q L+ VA D PL +E+ L + + + A +
Sbjct: 111 QLPAMLEELARAATTGRSVEQCLQLVAAD---TPSPLGDELQLCVRRMQMGMPMRDAVAD 167
Query: 242 FYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVP 301
+RT + +R L + G + L L R +A + + T
Sbjct: 168 LPDRTGLMTLRLFCMTLGVHQQTGGDLVWVLEQLSKTIRDRLQYLGRLRAMTAASRATAL 227
Query: 302 MIIFFLPVLILVI 314
+++ P +++
Sbjct: 228 LMVVLPPGVLIFF 240
>gi|13475421|ref|NP_106985.1| hypothetical protein mlr6484 [Mesorhizobium loti MAFF303099]
gi|14026173|dbj|BAB52771.1| mlr6484 [Mesorhizobium loti MAFF303099]
Length = 323
Score = 103 bits (258), Expect = 3e-20, Method: Composition-based stats.
Identities = 45/193 (23%), Positives = 84/193 (43%), Gaps = 5/193 (2%)
Query: 124 PIIFLILGIIWIFGYDKLLEYPFQLRVG-AVILIGYVGFCAPSVWISNLVQKRQSSIKRA 182
P+ FL + ++ LL + AVI+ VGF P + + + KR
Sbjct: 92 PLAFLAVFLLAGLVLALLLPLLLHFSIIVAVIVFLIVGFVLPILVLRSARDKRIKKFAVQ 151
Query: 183 WPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENF 242
PDALD+++ + +G A+ VA ++ PL E + E+SF + + A
Sbjct: 152 LPDALDMIVRSLRAGHPTTVAIALVAREMPD---PLGTEFGIVSDEISFGLSLEQAVRKL 208
Query: 243 YNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPM 302
R + + + +L + G ++ + L L S R R + + +A S +++
Sbjct: 209 SERVGFEGLHLLSVSLSIQAKTGGNLTEILSNLSSVLRERRKLRMKIRALSAEGRMSA-W 267
Query: 303 IIFFLPVLILVII 315
II P+L+L ++
Sbjct: 268 IISLFPLLMLGVL 280
>gi|241207161|ref|YP_002978257.1| type II secretion system protein [Rhizobium leguminosarum bv.
trifolii WSM1325]
gi|240861051|gb|ACS58718.1| type II secretion system protein [Rhizobium leguminosarum bv.
trifolii WSM1325]
Length = 335
Score = 103 bits (258), Expect = 3e-20, Method: Composition-based stats.
Identities = 48/287 (16%), Positives = 113/287 (39%), Gaps = 23/287 (8%)
Query: 46 KSVAVEREILRKQQITSLQKDSASSRLRT--RDSKSLRNFVKKLNLKAILVDENI---VN 100
K A ++ + ++ +A R++ + KS+++ +K L + +
Sbjct: 35 KKSASRINRVKSAESDRVKVKAARDRVQELSKRRKSVQDNLKDLEKRQHEKTKKTVSMKA 94
Query: 101 KLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVG 160
+L AG + L+ ++ + L + + + V + G
Sbjct: 95 RLVQAGLTITAAKFYLISAVFASMLLLVALVVGASW-------------MVMVGIAVVAG 141
Query: 161 FCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSE 220
P + L+++RQ+ P+ALD++ ++SG+ ++ A+R +A + + P+
Sbjct: 142 LGLPRWVVGFLIKRRQTKFLNELPNALDVITRSIKSGLPLNDAIRLIATE---GTEPVKS 198
Query: 221 EMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETR 280
E L I + A + V + + G ++ +++ L R
Sbjct: 199 EFLRVIEAQQVGLSIPDACARMTIHMPLQEVNFFAIVIAIQSQAGGNLSEAIGNLSKVLR 258
Query: 281 SERLMEAEKKAASLGPKLTVPMI--IFFLPVLILVIIGPAILSIIDT 325
R M+A+ +A S+ K + +I + F+ ++ + P + I+ T
Sbjct: 259 ERRKMKAKVQALSMEAKASAVIIGALPFIVATLVYMTSPNYMMILFT 305
>gi|193213110|ref|YP_001999063.1| type II secretion system protein [Chlorobaculum parvum NCIB 8327]
gi|193086587|gb|ACF11863.1| type II secretion system protein [Chlorobaculum parvum NCIB 8327]
Length = 322
Score = 103 bits (258), Expect = 3e-20, Method: Composition-based stats.
Identities = 55/307 (17%), Positives = 119/307 (38%), Gaps = 32/307 (10%)
Query: 12 TELAVAITTAVSIFSLI---YAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSA 68
T ++ ++ ++ Y V + KR + +++ + Q S+ + +
Sbjct: 2 TTFLISFFAFAAVILIVLFAYGVWVNFFDPSNKAKRKRLKSIKSAVQWGGQSPSIAQINQ 61
Query: 69 SSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFL 128
+ +S +L N L A RS +S LL + V I+ +
Sbjct: 62 NDSDLEIWLRSHYRVFVRLE-----------NLLHRA--RSPFSALRLLGIMSAVFILVV 108
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
+LG++ + P L V AV P +W+S KR+ + P+ALD
Sbjct: 109 MLGLL-------VHTNPIVLFVLAVAFASS-----PLLWLSRQANKRRQAFSEKLPEALD 156
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
+ + +G S+ A+ V ++ G P+ +E + E+SF + A + +R +
Sbjct: 157 YVTRSLRAGHSLTSAIGIVGKEFPG---PIGQEFKIVFDEISFGIPFKEAMDRLADRVES 213
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP 308
+ +L G ++ + L L R + + + S +++ +++ +P
Sbjct: 214 VDLNFFVISLEIQHETGGNLTELLEGLAKTIRERFKLRGKVRTLSAEGRISA-LVLGSMP 272
Query: 309 VLILVII 315
++ I+
Sbjct: 273 FILTAIL 279
>gi|83859361|ref|ZP_00952882.1| hypothetical protein OA2633_13190 [Oceanicaulis alexandrii
HTCC2633]
gi|83852808|gb|EAP90661.1| hypothetical protein OA2633_13190 [Oceanicaulis alexandrii
HTCC2633]
Length = 331
Score = 103 bits (258), Expect = 3e-20, Method: Composition-based stats.
Identities = 43/294 (14%), Positives = 109/294 (37%), Gaps = 18/294 (6%)
Query: 30 AVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNL 89
+ +GS + R + + + A+++ R + + L+
Sbjct: 20 GLGWVFVGSSADKARKARLEGAVGGPVQSTRRRVGAVDAAAQKRRQIQEGLKELEDSQKA 79
Query: 90 KAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLR 149
+ + +L AG + ++ + + ++
Sbjct: 80 ERKKSL-TLRARLDQAGLFKTGP-TQFWIFSAILGFVAAFMVVV-----------TGLNI 126
Query: 150 VGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAE 209
+ AV G P + + + RQ + DALD+++ V+SG+ +++ L+ +A+
Sbjct: 127 LFAVAAAIIAGLGLPRWVLGMMRKGRQKKFTENFADALDIIVRGVKSGLPLNETLKIIAQ 186
Query: 210 DIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIG 269
+ P+ +E L + L+ + + + R + + T L + G ++
Sbjct: 187 EGEA---PVKQEFQLLVEGLAVGVDVEEGMRRMHRRMPLPELSFFTTVLAIQQKTGGNLA 243
Query: 270 DSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP--VLILVIIGPAILS 321
++L L + R+ ++M + A S K + +I P +++ I+ P ++
Sbjct: 244 EALNNLSAVLRARKMMREKVSALSSEAKASAWIIGSLPPGVGVMVSIMSPDYMT 297
>gi|241667100|ref|YP_002985184.1| type II secretion system protein [Rhizobium leguminosarum bv.
trifolii WSM1325]
gi|240862557|gb|ACS60222.1| type II secretion system protein [Rhizobium leguminosarum bv.
trifolii WSM1325]
Length = 300
Score = 103 bits (258), Expect = 3e-20, Method: Composition-based stats.
Identities = 43/205 (20%), Positives = 98/205 (47%), Gaps = 7/205 (3%)
Query: 125 IIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWIS----NLVQKRQSSIK 180
I L++ ++ F LL V ++ G + P+++ + Q R+ I
Sbjct: 96 IALLVVLSLFGFVVLGLLFGIASGSVIGGLVAGLILGLIPAIYFWVVADDKAQDRKERIS 155
Query: 181 RAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFE 240
R +P LDL+++ ++ ++ ++LR AE +SEE+ T+ +++ A +
Sbjct: 156 REFPYFLDLVVMTQQAQATLPESLRLYAE--AAPGTVMSEEIEQTLKDVALGTGMIEALQ 213
Query: 241 NFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV 300
R + V +A+IQ + G++ + LR + R R +A++ + L K+ +
Sbjct: 214 RLERRMTAEEVIRVIRAVIQGEVEGSNRVELLREHARDLRFRRWEKADRASEKLKAKIVM 273
Query: 301 PMIIFFLPVLILVIIGPAILSIIDT 325
P ++ + ++L+++ PAI+ ++ +
Sbjct: 274 PAMM-IVVSILLLVLAPAIVEMMSS 297
>gi|297571776|ref|YP_003697550.1| type II secretion system protein F [Arcanobacterium haemolyticum
DSM 20595]
gi|296932123|gb|ADH92931.1| Type II secretion system F domain protein [Arcanobacterium
haemolyticum DSM 20595]
Length = 291
Score = 103 bits (257), Expect = 4e-20, Method: Composition-based stats.
Identities = 50/313 (15%), Positives = 107/313 (34%), Gaps = 24/313 (7%)
Query: 15 AVAITTAVSIFSLIYAVVIPSLGSGE--LEKRMKSVAVEREILRKQQITSLQKDSASSRL 72
+A + A +I + S L R+ S A R++ ++
Sbjct: 1 MIAYIVVGCVIGGGIAAIIVAFISAPVSLTTRIISHAASRDVRTRR-----------MPY 49
Query: 73 RTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGI 132
R R + V++L + V + G S++ + ++ +I G
Sbjct: 50 RVRLAGYAAGVVERLGSTNVSVARRL-------GVVGHGSVSAFRLSQIQWAGGGIIAGA 102
Query: 133 IWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLI 192
+ + +P + V G G ++ + + PD ++L+ +
Sbjct: 103 LSGTSL-VIRGFPALTVLATVGFGGVCGALWADYRLTTAARATSRILTAQLPDVIELIAL 161
Query: 193 CVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVR 252
V +G + A+ R G PL E + T+A + + A + R V
Sbjct: 162 AVSAGEPVRPAIERAVRSGSG---PLIEHLRTTLAHVHAGKSLPAALSDLSVRAGNQNVS 218
Query: 253 NATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLIL 312
T +LI + G + +L + R + ++ + +P++ LP+ ++
Sbjct: 219 RFTDSLITAMEQGGGLAQTLHNQARDARDAARRDLLEEGGKAEISMMIPVVFLILPITVI 278
Query: 313 VIIGPAILSIIDT 325
I PA+ +
Sbjct: 279 FTIFPALSQLTFM 291
>gi|326205013|ref|ZP_08194863.1| Type II secretion system F domain [Clostridium papyrosolvens DSM
2782]
gi|325984818|gb|EGD45664.1| Type II secretion system F domain [Clostridium papyrosolvens DSM
2782]
Length = 296
Score = 103 bits (257), Expect = 4e-20, Method: Composition-based stats.
Identities = 47/216 (21%), Positives = 98/216 (45%), Gaps = 8/216 (3%)
Query: 108 RSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVW 167
S + + I ++V+ L L I L +Y + L G +
Sbjct: 82 YSAFYIRIFHAKKIVL----LALIIPVELLVGILSDYQAAFNIYITFLFGLM-LVLDDTI 136
Query: 168 ISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIA 227
++N V+KR+ I+ +PD ++ L + + +G+++ +A +++ D S +E+ T+A
Sbjct: 137 LTNKVKKRRLEIQLEFPDFINKLTLLLNAGLTMSKAWEKISLDSKKVS-AFHKEVKKTVA 195
Query: 228 ELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGT-SIGDSLRVLVSETRSERLME 286
+L + AF F R + + +IQ+ + G + +L++ +E+ R
Sbjct: 196 QLKTGVSEAEAFGEFAKRLKTPEISRVMSIIIQNSKKGGYDLVMTLKLQSNESWEIRKNA 255
Query: 287 AEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
+ KL PM+I F ++I+V + PA++S+
Sbjct: 256 VRRLGEEASTKLLFPMMIMFFAIIIIV-VTPALISM 290
>gi|116249985|ref|YP_765823.1| pilus assembly protein [Rhizobium leguminosarum bv. viciae 3841]
gi|115254633|emb|CAK05707.1| putative pilus assembly protein [Rhizobium leguminosarum bv. viciae
3841]
Length = 335
Score = 103 bits (257), Expect = 4e-20, Method: Composition-based stats.
Identities = 48/287 (16%), Positives = 118/287 (41%), Gaps = 23/287 (8%)
Query: 46 KSVAVEREILRKQQITSLQKDSASSRLRT--RDSKSLRNFVKKLNLKAILVDENI---VN 100
K A ++ + ++ +A R++ + KS+++ +K L + + +
Sbjct: 35 KKSASRINRVKSAESDRVKVKAARDRVQELSKRRKSVQDNLKDLEKRQHEKTKKTVSMKS 94
Query: 101 KLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVG 160
+L AG + ++ V + L++ ++ + + +G ++ G
Sbjct: 95 RLVQAGL--TITAAKFYLISAVFASVLLLIALV--------VGASLMVMIGIAVVA---G 141
Query: 161 FCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSE 220
P + L+++RQ+ +P+ALD++ ++SG+ ++ A+R +A + + P+
Sbjct: 142 LGLPRWVVGFLIKRRQTKFLNEFPNALDVITRSIKSGLPLNDAIRLIATE---GTEPVKS 198
Query: 221 EMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETR 280
E L I + A + V + + G ++ +++ L R
Sbjct: 199 EFLRVIEAQQVGLSIPDACARMTIHMPLQEVNFFAIVIAIQSQAGGNLSEAIGNLSKVLR 258
Query: 281 SERLMEAEKKAASLGPKLTVPMI--IFFLPVLILVIIGPAILSIIDT 325
R M+A+ A S+ K + +I + F+ ++ + P + I+ T
Sbjct: 259 ERRKMKAKVSALSMEAKASAVIIGALPFIVATLVYMTSPNYMMILFT 305
>gi|86137997|ref|ZP_01056573.1| type II/IV secretion system protein, TadC subfamily protein
[Roseobacter sp. MED193]
gi|85825589|gb|EAQ45788.1| type II/IV secretion system protein, TadC subfamily protein
[Roseobacter sp. MED193]
Length = 322
Score = 103 bits (257), Expect = 4e-20, Method: Composition-based stats.
Identities = 39/175 (22%), Positives = 74/175 (42%), Gaps = 6/175 (3%)
Query: 123 VPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRA 182
+ +I L + FG P LRV A I+IG G W++ KR + I+
Sbjct: 94 LMMIMAGLATLAFFGLSIGTNTPLPLRVLASIVIGVGGVF---FWVNRKAGKRMALIEEQ 150
Query: 183 WPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENF 242
PDA++L++ + G + ++ VA +I PL+ E + E ++ + A +
Sbjct: 151 LPDAVELMVRSLRVGHPFNSTVQIVAHEIED---PLATEFGIIADECAYGRDIGEALKEM 207
Query: 243 YNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPK 297
R + +R + A+ + G ++ + L L R+ + KA + +
Sbjct: 208 AERLDIQDLRFLSVAVTIQQQSGGNLAEVLAGLAKVIRARFRLFRRVKAITAEAQ 262
>gi|166033071|ref|ZP_02235900.1| hypothetical protein DORFOR_02793 [Dorea formicigenerans ATCC
27755]
gi|166027428|gb|EDR46185.1| hypothetical protein DORFOR_02793 [Dorea formicigenerans ATCC
27755]
Length = 397
Score = 103 bits (257), Expect = 5e-20, Method: Composition-based stats.
Identities = 37/193 (19%), Positives = 79/193 (40%), Gaps = 7/193 (3%)
Query: 136 FGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVE 195
+ ++ + + + A ++I + F Q RQ + +P+ + L + +
Sbjct: 204 IHFYTVMNWRGAVIMAAAVVISVLFFALDKQNEIKEKQARQKQMCLDYPEVISKLTLLLG 263
Query: 196 SGISIDQALRRVAEDIGGQ-----SVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDC 250
+G+++ +A ++ D + + EEM T ++ +E F R
Sbjct: 264 AGMTVRKAWIKIVNDYDSRIKQQGKRAVYEEMKYTCRQMDGGVPEAECYEKFGRRCGTQE 323
Query: 251 VRNATQALIQSDRYGT-SIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPV 309
L Q+ R GT + D LR+ ++ ER A + G KL +PM L
Sbjct: 324 YMRFGALLSQNLRKGTKGLNDLLRLEAIQSFEERKARARRLGEEAGTKLLLPM-FLMLAE 382
Query: 310 LILVIIGPAILSI 322
++++++ PA ++
Sbjct: 383 VLVIVVVPAFFTV 395
>gi|116255775|ref|YP_771608.1| putative transmembrane pilus component protein [Rhizobium
leguminosarum bv. viciae 3841]
gi|115260423|emb|CAK03527.1| putative transmembrane pilus component protein [Rhizobium
leguminosarum bv. viciae 3841]
Length = 301
Score = 103 bits (256), Expect = 5e-20, Method: Composition-based stats.
Identities = 43/205 (20%), Positives = 98/205 (47%), Gaps = 7/205 (3%)
Query: 125 IIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWIS----NLVQKRQSSIK 180
I L++ ++ F LL V ++ G + P+++ + Q R+ I
Sbjct: 97 IALLVVLSLFGFIVLGLLFGIASGSVIGGLVAGLILGLIPAIYFWVVADDKAQDRKERIS 156
Query: 181 RAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFE 240
R +P LDL+++ ++ ++ ++LR AE +SEE+ T+ +++ A +
Sbjct: 157 REFPYFLDLVVMTQQAQATLPESLRLYAE--AAPGTVMSEEIEQTLKDVALGTGMIEALQ 214
Query: 241 NFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV 300
R + V +A+IQ + G++ + LR + R R +A++ + L K+ +
Sbjct: 215 RLERRMTAEEVIRVIRAVIQGEVEGSNRVELLREHARDLRFRRWEKADRASEKLKAKIVM 274
Query: 301 PMIIFFLPVLILVIIGPAILSIIDT 325
P ++ + ++L+++ PAI+ ++ +
Sbjct: 275 PAMM-IVVSILLLVLAPAIVEMMSS 298
>gi|83943935|ref|ZP_00956392.1| type II/IV secretion system protein, TadC subfamily protein
[Sulfitobacter sp. EE-36]
gi|83954508|ref|ZP_00963219.1| type II/IV secretion system protein, TadC subfamily protein
[Sulfitobacter sp. NAS-14.1]
gi|83840792|gb|EAP79963.1| type II/IV secretion system protein, TadC subfamily protein
[Sulfitobacter sp. NAS-14.1]
gi|83845182|gb|EAP83062.1| type II/IV secretion system protein, TadC subfamily protein
[Sulfitobacter sp. EE-36]
Length = 320
Score = 103 bits (256), Expect = 5e-20, Method: Composition-based stats.
Identities = 53/292 (18%), Positives = 119/292 (40%), Gaps = 21/292 (7%)
Query: 24 IFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNF 83
I+ LI+ V+ + L KS+++ ++ R+ ++ L+K + + + K ++
Sbjct: 7 IYGLIFVGVLVLVEGLYLVAFGKSISLNSKVNRRLEM--LEKGARREEVLDKLRKEMQQH 64
Query: 84 VKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLE 143
+ ++ + K + +L++ + L + E
Sbjct: 65 MDNKSIPVYSLLAEKAQK----------AAIAFAPKQLIMIMAGLSVVAFLGLTIGTNTE 114
Query: 144 YPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQA 203
P ++ + I +G V F WIS+ +KR I+ PDA++L++ + G A
Sbjct: 115 VPVRILISVGIGVGAVFF-----WISSKAKKRMDMIEEQLPDAVELMVRSLRVGHPFTSA 169
Query: 204 LRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDR 263
+ V+++I PL+ E + E ++ + A ++ R M +R A+ +
Sbjct: 170 ISIVSKEIQD---PLASEFGVIADETAYGRDIGEALKDMAERLDMQDLRFLAVAVTIQQQ 226
Query: 264 YGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVII 315
G ++ + L L R+ + +A + K + + P+L L++I
Sbjct: 227 SGGNLAEILAGLAKVIRARFRLFRRVRAITAEAKWSGK-FLSAFPILALIVI 277
>gi|302037433|ref|YP_003797755.1| pilus assembly protein TadB [Candidatus Nitrospira defluvii]
gi|300605497|emb|CBK41830.1| Pilus assembly protein TadB [Candidatus Nitrospira defluvii]
Length = 313
Score = 103 bits (256), Expect = 5e-20, Method: Composition-based stats.
Identities = 41/202 (20%), Positives = 88/202 (43%), Gaps = 5/202 (2%)
Query: 124 PIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAW 183
P+ L+ + G L + L + A+++I VG A ++S R++ +R
Sbjct: 83 PLGALVGACLAPAGASVALAFVDALGMPAMLVIATVGSVATPAYLSWRAAARRAHFQRQL 142
Query: 184 PDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFY 243
PDALD++ + +G + ++ VAE+ P+ E + E++F + A +
Sbjct: 143 PDALDMMARSLRAGHAFLAGMKIVAEEF---PAPIGAEFRSVVEEVAFGVSVTEALQRLT 199
Query: 244 NRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMI 303
R + +++ G ++ + L + TR + A+ +A S +L+ ++
Sbjct: 200 ARVDSPALNFFVTSVLIQRESGGNLAEILNTISRMTRKRFELAAKVRAVSAEGRLSAVIL 259
Query: 304 IFFLPVL--ILVIIGPAILSII 323
L +L+II P + ++
Sbjct: 260 FALPFALGGLLLIINPDYVLLL 281
>gi|229821270|ref|YP_002882796.1| type II secretion system protein [Beutenbergia cavernae DSM 12333]
gi|229567183|gb|ACQ81034.1| type II secretion system protein [Beutenbergia cavernae DSM 12333]
Length = 315
Score = 103 bits (256), Expect = 6e-20, Method: Composition-based stats.
Identities = 54/264 (20%), Positives = 96/264 (36%), Gaps = 5/264 (1%)
Query: 56 RKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNI 115
R+ T L ++ R + V KL + +I +L AG S++
Sbjct: 50 RRATSTLLPASDGAASALERLIAPVVGDVGKLLERLGSSSSSIRRRLALAG--GRTSVDA 107
Query: 116 LLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKR 175
V ++ L LG+ V L G ++ V+ R
Sbjct: 108 FRVEQVAWGAAGLALGLALAIVIGVTRGVSPVPLAVLVALAAVAGMLLRDRRLTRQVRAR 167
Query: 176 QSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNR 235
++ I +P +LL + V +G + AL RVA G LS E+ T+A++
Sbjct: 168 EARIMAEFPTVAELLALAVSAGEAPVAALDRVARSTQG---ELSAELGRTLADVRAGATM 224
Query: 236 QVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLG 295
A E RT + V + + G+ + D LR ++ R E +
Sbjct: 225 AGALEGLARRTDLPAVSRFADGVAVAIERGSPLADVLRAQAADARDAGKRELMESGGRKE 284
Query: 296 PKLTVPMIIFFLPVLILVIIGPAI 319
+ +P++ LPV ++ + P +
Sbjct: 285 VAMMIPVVFLVLPVTVVFALFPGL 308
>gi|292655192|ref|YP_003535089.1| type IV pilus biogenesis complex membrane subunit [Haloferax
volcanii DS2]
gi|291371902|gb|ADE04129.1| type IV pilus biogenesis complex membrane subunit [Haloferax
volcanii DS2]
Length = 707
Score = 102 bits (255), Expect = 6e-20, Method: Composition-based stats.
Identities = 46/212 (21%), Positives = 92/212 (43%), Gaps = 11/212 (5%)
Query: 121 LVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVI----LIGYVGFCAPSVWISNLVQKRQ 176
LV + + LG++W+ + P L V + + +G L ++R
Sbjct: 425 LVALALTVPLGLVWVALRATIPADPTILGVADAVDEHVVEAAIGSLVVVSAFHELRKRRI 484
Query: 177 SSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQ 236
+I+R+ PD LD L E+G+++ Q+LRRV+ PL +E+ + ++ + + Q
Sbjct: 485 RAIERSMPDFLDRLASVNEAGLTVVQSLRRVS---ASDLGPLGDEVERAVRDIDWGADAQ 541
Query: 237 VAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGP 296
A RT V + + + + LR+ +E + R + A ++ +
Sbjct: 542 TALRRMDRRTASPMVSRSVTLITNAMSASGDLAPVLRIAANEAQDSRRL-ARERNQEM-- 598
Query: 297 KLTVPMIIFFLPVLILVIIGPAILSIIDTMKD 328
LT ++I+ ++ L II +S I ++
Sbjct: 599 -LTYLLVIYISFLVFLGIIAALTVSFIPAVEQ 629
Score = 51.8 bits (123), Expect = 1e-04, Method: Composition-based stats.
Identities = 20/155 (12%), Positives = 49/155 (31%), Gaps = 3/155 (1%)
Query: 122 VVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKR 181
+ + + I + D L +L V + ++ + R S I+
Sbjct: 116 ALGFLGGLTSIQALPLRDLFLALLLSSATLGTLLALGV-YWGRWYVLTERARTRSSEIEA 174
Query: 182 AWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSF-LPNRQVAFE 240
P + + SG+ Q L +A + + E+ + + ++ + + +
Sbjct: 175 TLPRTVAFVFALSRSGMPFPQVLETLARN-EAIYGEAAREVSIVVRDMDAFGTDVLSSLQ 233
Query: 241 NFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVL 275
RT + + L G ++ L+
Sbjct: 234 TMATRTPSPSLEEFAENLASVLGSGRNLSSFLQEQ 268
>gi|259417689|ref|ZP_05741608.1| type II secretion system protein [Silicibacter sp. TrichCH4B]
gi|259346595|gb|EEW58409.1| type II secretion system protein [Silicibacter sp. TrichCH4B]
Length = 322
Score = 102 bits (255), Expect = 6e-20, Method: Composition-based stats.
Identities = 43/283 (15%), Positives = 108/283 (38%), Gaps = 28/283 (9%)
Query: 15 AVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRT 74
+ + + L+ + + + G KS+++ + R+ ++ L+K ++
Sbjct: 8 LIYGLIFIGVLVLVEGIYLVAFG--------KSISLNSRVNRRLEM--LEKGGNREQVLE 57
Query: 75 RDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIW 134
+ K ++ + ++ + K + V+L++ + L
Sbjct: 58 QLRKEMQQHLNSQSIPLYSLLAEKAQK----------AAIAFTPVQLIMIMGVLCAVAFV 107
Query: 135 IFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICV 194
P ++ +I +G V F W+++ +KR + ++ PD ++L++ +
Sbjct: 108 GLSIGTQAALPVKVLGSVIIGVGAVFF-----WVNSKAKKRMAKLEEQLPDGVELMVRSL 162
Query: 195 ESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNA 254
G A++ VA+++ PL+ E + E S+ + A + R M +R
Sbjct: 163 RVGHPFSSAVQIVAKEVDD---PLATEFGIIADECSYGRDVGEALKEMAERLDMQDLRFL 219
Query: 255 TQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPK 297
A+ + G ++ + L L R+ + KA + +
Sbjct: 220 AVAVTIQQQSGGNLAEVLAGLAKVIRARFRLFRRVKAITAEAQ 262
>gi|238897544|ref|YP_002923223.1| putative tight adherance operon protein C [Candidatus Hamiltonella
defensa 5AT (Acyrthosiphon pisum)]
gi|229465301|gb|ACQ67075.1| putative tight adherance operon protein C [Candidatus Hamiltonella
defensa 5AT (Acyrthosiphon pisum)]
Length = 275
Score = 102 bits (255), Expect = 7e-20, Method: Composition-based stats.
Identities = 33/179 (18%), Positives = 83/179 (46%), Gaps = 3/179 (1%)
Query: 121 LVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIK 180
+ +F ++ +F + + + I +GF + I +++ ++ +
Sbjct: 70 FCIASLFALIFAAALFFWKIEYSKNILITLFLTSSIFSIGFY--QLLIKSIIFRKTRLML 127
Query: 181 RAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFE 240
++P +D+ C+++G++I+ AL AE+ + ++ ++ + + + + Q A +
Sbjct: 128 SSFPFFIDMTAACIQAGMTIENALTYSAENFYKINEDIASLIIQVVRK-AEVHGLQNAMK 186
Query: 241 NFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLT 299
Y ++ A+ S +G+S+ + L ++ R +LME+E+K + L KLT
Sbjct: 187 TLYQDVSFLEIKMFCNAVQNSVDFGSSVYEHLMKFSTDIREIQLMESEEKISKLSVKLT 245
>gi|209546004|ref|YP_002277894.1| type II secretion system protein [Rhizobium leguminosarum bv.
trifolii WSM2304]
gi|209538861|gb|ACI58794.1| type II secretion system protein [Rhizobium leguminosarum bv.
trifolii WSM2304]
Length = 300
Score = 102 bits (255), Expect = 7e-20, Method: Composition-based stats.
Identities = 41/205 (20%), Positives = 99/205 (48%), Gaps = 7/205 (3%)
Query: 125 IIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWIS----NLVQKRQSSIK 180
I L++ ++ F +L + ++ G + P+++ + +Q R+ I
Sbjct: 96 IALLVVLSLFGFILLGVLFGIASGSIIGGLVAGLILGLIPAIYFWVVADDKMQDRKERIS 155
Query: 181 RAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFE 240
R +P LDL+++ ++ ++ ++LR AE +SEE+ T+ +++ A +
Sbjct: 156 REFPYFLDLVVMTQQAQATLPESLRLYAE--AAPGTVMSEEIDQTLKDVALGTGMVEALQ 213
Query: 241 NFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV 300
R + V +A+IQ + G++ + LR + R R +A++ + L K+ +
Sbjct: 214 RLERRMTAEEVIRVIRAVIQGEVEGSNRVELLREHARDLRFRRWEKADRASEKLKAKIVM 273
Query: 301 PMIIFFLPVLILVIIGPAILSIIDT 325
P ++ + ++L+++ PAI+ ++ +
Sbjct: 274 PAMM-IVVSILLLVLAPAIVEMMSS 297
>gi|83950070|ref|ZP_00958803.1| type II/IV secretion system protein, TadC subfamily protein
[Roseovarius nubinhibens ISM]
gi|83837969|gb|EAP77265.1| type II/IV secretion system protein, TadC subfamily protein
[Roseovarius nubinhibens ISM]
Length = 322
Score = 102 bits (255), Expect = 8e-20, Method: Composition-based stats.
Identities = 53/289 (18%), Positives = 114/289 (39%), Gaps = 26/289 (8%)
Query: 24 IFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNF 83
I+ LI+ V+ + L KS+++ + R+ ++ + + R L
Sbjct: 9 IYGLIFVGVLVLVEGIYLTVFGKSISLNSRVNRRLEMLDKNANREEVMEKLRKEMQLHLR 68
Query: 84 VKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLE 143
+++ L AIL +++ + +L++ + ++L ++ G
Sbjct: 69 SRRIPLYAILAT------------KAQKAAIAFSPKQLIM--LMVLLSMVAFVGLTFGTA 114
Query: 144 YPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQA 203
+R+ A I IG +WIS+ +KR + ++ PDA++L++ + G A
Sbjct: 115 TSLPVRILASIGIGVSAIF---MWISSKAKKRTARLEEQLPDAIELMVRSLRVGHPFSAA 171
Query: 204 LRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDR 263
+ VA ++ PL+ E + E ++ A ++ R M +R A+ +
Sbjct: 172 ISIVANEVSD---PLATEFGIIADEAAYGRELGEALKDMAERLDMQDLRFLAVAVTIQQQ 228
Query: 264 YGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLT------VPMIIFF 306
G ++ + L L RS + KA + K + P++
Sbjct: 229 SGGNLAEILDGLSKVIRSRFKLFRRVKAITAEAKWSGNFLSGFPLMALI 277
>gi|256832096|ref|YP_003160823.1| type II secretion system protein [Jonesia denitrificans DSM 20603]
gi|256685627|gb|ACV08520.1| type II secretion system protein [Jonesia denitrificans DSM 20603]
Length = 311
Score = 102 bits (254), Expect = 8e-20, Method: Composition-based stats.
Identities = 42/228 (18%), Positives = 84/228 (36%), Gaps = 5/228 (2%)
Query: 95 DENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVI 154
+ +L A R +L+ + ++ L LGI+ + VI
Sbjct: 85 NAQTEKRLAKA--RRNITLHQYRLHQVAAGTAGLTLGILVSLYLAIYRNAHIVALIILVI 142
Query: 155 LIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQ 214
G A +++ +++R I +P +LL + V +G AL RV+
Sbjct: 143 AAAIAGVAACEQHLTHTIRRRSERIILEFPTIAELLALAVAAGEPPATALDRVS---RTS 199
Query: 215 SVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRV 274
+ LS E+ + + E+ A F +R + + + + + GT + LR
Sbjct: 200 NGELSHELAIVMNEVRSGEPLTDALTRFGDRVDLPLITRFAEGVTVAIERGTPLAAVLRA 259
Query: 275 LVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
E R + + VP++ LP+ I+ + P+ ++
Sbjct: 260 QAQEARDAGHRTLMEVGGQREILMMVPVVFIILPISIVFAVFPSFTAL 307
>gi|238923484|ref|YP_002937000.1| hypothetical protein EUBREC_1104 [Eubacterium rectale ATCC 33656]
gi|238875159|gb|ACR74866.1| Hypothetical protein EUBREC_1104 [Eubacterium rectale ATCC 33656]
Length = 289
Score = 102 bits (254), Expect = 8e-20, Method: Composition-based stats.
Identities = 38/191 (19%), Positives = 81/191 (42%), Gaps = 5/191 (2%)
Query: 133 IWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLI 192
++ + V I+ +V F S+ ++KR + + + + L +
Sbjct: 101 LFTMSFAMYGLAGSMAAVAIFIMFAFVAFYYYGTSASDKIKKRSEELLSDFSNVVSKLAL 160
Query: 193 CVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVR 252
+G+ + A VA + L +EM +++ E+ + A +F NR + ++
Sbjct: 161 LTNAGLIMRDAWADVA---YNGNTTLYKEMQISVDEMKNGVSETEAIYHFGNRCIIPEIK 217
Query: 253 NATQALIQSDRYGTS-IGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLI 311
+IQ G S + L+ +ET + + +++ KL +PM + F+ +LI
Sbjct: 218 KFASTIIQGIEKGNSELTALLQEQSAETWNLKRQLVKREGEKASSKLLIPMFLMFMGILI 277
Query: 312 LVIIGPAILSI 322
+VI+ P +I
Sbjct: 278 MVIV-PIFTNI 287
>gi|194335918|ref|YP_002017712.1| type II secretion system protein [Pelodictyon phaeoclathratiforme
BU-1]
gi|194308395|gb|ACF43095.1| type II secretion system protein [Pelodictyon phaeoclathratiforme
BU-1]
Length = 332
Score = 102 bits (254), Expect = 8e-20, Method: Composition-based stats.
Identities = 46/315 (14%), Positives = 114/315 (36%), Gaps = 19/315 (6%)
Query: 14 LAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLR 73
++ +++ ++ + +L + K ++ +Q + + R
Sbjct: 4 FLISFFAFLAVMLIMLLLYGVWFHFFDLRNQAKKKHLQAIYNAVRQSGQSLGNEQTPRQE 63
Query: 74 TRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGII 133
+ R+ + + L+ A + RL+V ++ L ++
Sbjct: 64 SAIETWFRSRSRTFETWLRSRSGTLETLLQRA-------HTPFTIGRLIVLMLALFTLVV 116
Query: 134 WIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLIC 193
+ P L + AV + P +W+ ++R+ P+ALD +
Sbjct: 117 VLGLLLLPQTNPLHLLMLAVAIASM-----PVLWLLRQAKQRRKVFGDKLPEALDYISRA 171
Query: 194 VESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRN 253
+ +G S+ A+ V +++ P+ E E+SF + A + +R Q + +
Sbjct: 172 MRAGHSLTSAIGMVGKELPD---PIGYEFKTVFDEISFGIPFKDAIGHLADRIQSNDLNF 228
Query: 254 ATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLI-- 311
+L G ++ + L L R + + + S + + I+ +P +
Sbjct: 229 FVISLKIQHETGGNLAELLHGLAKTIRERVKLRGKVRTLSSEGRASA-WILGTMPFVFAG 287
Query: 312 -LVIIGPAILSIIDT 325
L++I P +S++ +
Sbjct: 288 ILMLINPGYISVLWS 302
>gi|317133736|ref|YP_004089647.1| Type II secretion system F domain [Ruminococcus albus 7]
gi|315450198|gb|ADU23761.1| Type II secretion system F domain [Ruminococcus albus 7]
Length = 286
Score = 102 bits (254), Expect = 8e-20, Method: Composition-based stats.
Identities = 44/206 (21%), Positives = 100/206 (48%), Gaps = 6/206 (2%)
Query: 122 VVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKR 181
++ + +LGI+ F + L L A +I + F +P+ I++ QK+++ +
Sbjct: 86 ILAVTIAVLGILIAFLINTPLIS--LLIGLATAVITILVFISPTATINDRAQKKKAQFES 143
Query: 182 AWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPN-RQVAFE 240
P LDL ++ + + A++ AE I G LSEE+L + + Q +
Sbjct: 144 EIPRFLDLFQTAIKINLPVATAIKITAESIDGI---LSEELLRALVVTELGTSNWQDSLY 200
Query: 241 NFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV 300
+ + ++D + ++ + + G+ I +S+ +S L+ A+++AA + +
Sbjct: 201 DIAQKYEVDSFSDFVLDIVTAFQKGSDITESVERQSRSIKSSTLLSAKEQAAKTTSLILI 260
Query: 301 PMIIFFLPVLILVIIGPAILSIIDTM 326
P+++F + L++++ P I+ I++ M
Sbjct: 261 PVVVFKMIPLMIILFLPVIMQILNGM 286
>gi|220923699|ref|YP_002499001.1| type II secretion system protein [Methylobacterium nodulans ORS
2060]
gi|219948306|gb|ACL58698.1| type II secretion system protein [Methylobacterium nodulans ORS
2060]
Length = 327
Score = 102 bits (254), Expect = 9e-20, Method: Composition-based stats.
Identities = 62/316 (19%), Positives = 121/316 (38%), Gaps = 25/316 (7%)
Query: 13 ELAVAITTAVSIFSLIYAVVIPSLGS-GELEKRMKSVAVEREILRKQQITSLQKDSASSR 71
L V A S L+ A P L L++R++ V R + + +
Sbjct: 4 PLLVFFLGAFSTGGLLLAAFHPRLARTSALDRRLQLV-------RASAGQTTRAAGSDDN 56
Query: 72 LRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILG 131
R R + L ++ ++V +LR A +S + + L V L
Sbjct: 57 RRKRSVQELLRETEQKQKAKNSAKLSLVMRLRQADL--GWSKSTYYTICLTVG----TLA 110
Query: 132 IIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLL 191
+ ++G L P AV G P +++S ++R +P+A+D+++
Sbjct: 111 FLAMWGLMGLGLLP------AVGFGLCGGMLLPHLYVSARRKRRFKRFAAEFPNAIDVIV 164
Query: 192 ICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCV 251
V++G+ + L VA + P+ E + + + Q A E R +
Sbjct: 165 RGVKAGLPLVDCLNIVAAEAQE---PVKSEFRALVEDQTLGMPLQDAVERLPERMPLSEA 221
Query: 252 RNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMI--IFFLPV 309
R + R G S+ ++L L R + M+ + KA S K + +I + +
Sbjct: 222 RFFAIVIAIQSRTGGSLSEALGNLSRVLRERKKMQGKIKAVSSEAKASAGIIAALPIVVG 281
Query: 310 LILVIIGPAILSIIDT 325
++ + PA ++++ T
Sbjct: 282 SLVYLTSPAYMALLFT 297
>gi|309792340|ref|ZP_07686810.1| type II secretion system protein [Oscillochloris trichoides DG6]
gi|308225655|gb|EFO79413.1| type II secretion system protein [Oscillochloris trichoides DG6]
Length = 325
Score = 102 bits (254), Expect = 9e-20, Method: Composition-based stats.
Identities = 34/220 (15%), Positives = 84/220 (38%), Gaps = 12/220 (5%)
Query: 110 EYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWIS 169
+ ++ + V+L+ ++ L++G+ + GA ++ + AP+++++
Sbjct: 84 KLTVAEFMGVKLIAAVVGLLVGMY-------VGRANQAAMFGAGLVGAVIFSFAPNIYLN 136
Query: 170 NLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAEL 229
+KR S D + ++ + G S Q L VA D P+S E + E+
Sbjct: 137 MRAKKRIKSFNDQLGDTITMMANALRGGFSFLQTLDMVARD---APAPMSGEFRRVVQEV 193
Query: 230 SFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEK 289
+ A ++ R + + A+ G ++ L + R ++ E
Sbjct: 194 GLGRTTEEALQSLLRRMPSEDLDLLITAVNIQMEVGGNLAQILDTIGHTIRERVRIKGEI 253
Query: 290 KAASLGPKLT--VPMIIFFLPVLILVIIGPAILSIIDTMK 327
+ + +++ V + + + +I P + I +
Sbjct: 254 QTLTAQGRISGWVITGLPIGLAIFITMINPEYMMPIFSFG 293
>gi|86360424|ref|YP_472312.1| putative pilus assembly protein [Rhizobium etli CFN 42]
gi|86284526|gb|ABC93585.1| putative pilus assembly protein [Rhizobium etli CFN 42]
Length = 300
Score = 102 bits (254), Expect = 9e-20, Method: Composition-based stats.
Identities = 40/205 (19%), Positives = 98/205 (47%), Gaps = 3/205 (1%)
Query: 121 LVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIK 180
+ + ++ + G I + + A +++G++ V + +Q R+ I
Sbjct: 96 IALLVVLSLFGFILLGVLFGFASGSVIGGLVAGLILGFIPAIYFWVVADDKMQDRKERIS 155
Query: 181 RAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFE 240
R +P LDL+++ ++ ++ ++LR AE +SEE+ T+ +++ A +
Sbjct: 156 REFPYFLDLVVMTQQAQATLPESLRLYAE--AAPGTVMSEEIEQTLKDVALGTGMIEALQ 213
Query: 241 NFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV 300
R + V +A+IQ + G++ + LR + R R +A++ + L K+ +
Sbjct: 214 RLEARMTAEEVVRVIRAVIQGEVEGSNRVELLREHARDLRFRRWEKADRASEKLKAKIVM 273
Query: 301 PMIIFFLPVLILVIIGPAILSIIDT 325
P ++ + ++L+++ PAI+ ++ +
Sbjct: 274 PAMM-IVVSILLLVLAPAIVEMMSS 297
>gi|116620535|ref|YP_822691.1| type II secretion system protein [Candidatus Solibacter usitatus
Ellin6076]
gi|116223697|gb|ABJ82406.1| type II secretion system protein [Candidatus Solibacter usitatus
Ellin6076]
Length = 323
Score = 102 bits (254), Expect = 1e-19, Method: Composition-based stats.
Identities = 62/312 (19%), Positives = 124/312 (39%), Gaps = 26/312 (8%)
Query: 15 AVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRT 74
I + V +F+L+ + + +R K V S + + S L
Sbjct: 3 LTLIVSFVVVFALML-LAVSLGLKYFDARRKKQVVD------MLHTASGEPAVSVSNLLK 55
Query: 75 RDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIW 134
+K+L L + + ++ AG +S + L+ ++ I LG++
Sbjct: 56 EIENDKPTGLKRL-LTSFQFSRHAAEMIQQAGL--NWSPSRLMAAMALMMIPGFGLGLMM 112
Query: 135 IFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICV 194
F ++ +++ + AP V + KR ++++ +P++LD L +
Sbjct: 113 PFLFNAPTT---------AVVLALLFGSAPYVVVRQKRSKRLATLEEQFPESLDFLARSM 163
Query: 195 ESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNA 254
+G + +L + E++ PL +E E + A NF R + VR
Sbjct: 164 RAGHAFSISLEMLGEELAD---PLGQEFRALFNEQNLGAPLDTALRNFTTRVPLLDVRFF 220
Query: 255 TQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPV---LI 311
T +++ + G ++ + L L R ++ + KAAS +LT I+ LPV L
Sbjct: 221 TSSVLLQKQTGGNLSEILARLAYVIRERFRLKGQVKAASAHGRLTA-TILTLLPVGTMLA 279
Query: 312 LVIIGPAILSII 323
L+++ P L +
Sbjct: 280 LLVVAPGYLQGM 291
>gi|110636325|ref|YP_676533.1| type II secretion system protein [Mesorhizobium sp. BNC1]
gi|110287309|gb|ABG65368.1| type II secretion system protein [Chelativorans sp. BNC1]
Length = 337
Score = 101 bits (253), Expect = 1e-19, Method: Composition-based stats.
Identities = 59/310 (19%), Positives = 124/310 (40%), Gaps = 19/310 (6%)
Query: 14 LAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLR 73
LA + A S L Y ++ ++ S + +R +I + + + ++ R
Sbjct: 9 LAFVVLAACSAGGLAYVLMFNTIASEKKVERRLETVKRAQIEGNVVRAARDRAAEIAKRR 68
Query: 74 TRDSKSLRNFVKKLN-LKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGI 132
+SL++ + L + ++R AG E S+ ++ VV ++F+I+
Sbjct: 69 RSIQESLKDIETRQKDQDRFLKRPPLKIQIRQAGL--EMSMERFYILSAVVGLLFVIVTF 126
Query: 133 IWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLI 192
I L V ++ G+ G AP I+ L ++R + +P+ALD+++
Sbjct: 127 IA---------GAPLLAVAGAMVAGFFG--APRWIIAYLRRRRVQAFLNEFPNALDIIVR 175
Query: 193 CVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVR 252
V+SG+ ++ A+R +A + P+ E + A V
Sbjct: 176 AVKSGLPLNDAVRMIAVEAQE---PVRTEFRRLVEAQQLGLPMAEAAMRMSETMPCPEVN 232
Query: 253 NATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMI--IFFLPVL 310
L + G ++ ++L L R + ++A +A S+ K + +I + +
Sbjct: 233 FFGIVLQIQSQAGGNLSEALGNLSRVLRERKKIKARVQALSMEAKASAVIIGALPIVVAA 292
Query: 311 ILVIIGPAIL 320
++ I PA +
Sbjct: 293 LVYITSPAYI 302
>gi|239833233|ref|ZP_04681562.1| type II secretion system protein [Ochrobactrum intermedium LMG
3301]
gi|239825500|gb|EEQ97068.1| type II secretion system protein [Ochrobactrum intermedium LMG
3301]
Length = 336
Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats.
Identities = 50/320 (15%), Positives = 115/320 (35%), Gaps = 21/320 (6%)
Query: 10 DATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSAS 69
A+ + + ++ +L YA+ LG + R R + +++
Sbjct: 4 SASIVMFVVLAVIACAALFYALFYEKLGKKDHAARRFETVRNSGSERAITRSERDRNADI 63
Query: 70 SRLRTRDSKSLRNFVKKLNLKAILVD-ENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFL 128
+ R + ++++ + + + L AG + L + +L
Sbjct: 64 QKRRKQLQDNIKDLEARQKQREKNQKYPPLRILLTQAG------------LTLTLQKFYL 111
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
G F L + L I I F P ++ + ++R +P+ALD
Sbjct: 112 YSGAAAFFATFVALLFGAPLLFLPGIAIAGF-FGLPRWFVLHRRKQRLKKFLEEFPNALD 170
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
+++ +G+ ++ LR +A + P+ E + + A +
Sbjct: 171 VIVRATRAGLPLNDGLRLIASE---AVEPVKSEFKKVVEAQQIGLSIPEAVGKMPDSMPC 227
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP 308
+ + G ++ ++L L R + M+A+ A S+ K + II LP
Sbjct: 228 PETNFFAIVIQIQAQAGGNLSEALNNLSKVLRDRKKMKAKVNALSMEAKASAA-IIGALP 286
Query: 309 VLILVIIG---PAILSIIDT 325
+++V++ P ++++ T
Sbjct: 287 FIVMVLVYLTSPLYMTLLFT 306
>gi|257064723|ref|YP_003144395.1| Flp pilus assembly protein TadC [Slackia heliotrinireducens DSM
20476]
gi|256792376|gb|ACV23046.1| Flp pilus assembly protein TadC [Slackia heliotrinireducens DSM
20476]
Length = 205
Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats.
Identities = 41/208 (19%), Positives = 91/208 (43%), Gaps = 12/208 (5%)
Query: 121 LVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIK 180
++ + LG +I G+ + F R G +V ++ ++I+
Sbjct: 5 WLLAAVASALGCGFIVGWSFIHRKEFLKRRGRGPGAAASDGLFGAVRRKRRQREASAAIE 64
Query: 181 RAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAEL-----SFLPNR 235
R P+ +D + + +++G+S D A G +E+ A+ S L +R
Sbjct: 65 RHVPEMMDAVALGMKAGLSFDSA-------FGLYHARFDDELARACAQAHTEWESGLVSR 117
Query: 236 QVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLG 295
+ A + R +R + ++ ++G+SI L L +E ++ E+K A +
Sbjct: 118 EQALTDMAERFDSAPLRRFASNVSRNLKFGSSIVRVLGALSAEAQAAYRTRMEEKVAKVP 177
Query: 296 PKLTVPMIIFFLPVLILVIIGPAILSII 323
++ +P + LP +++V++GP +L ++
Sbjct: 178 VRMLMPTAMLILPAMLIVVLGPVMLELL 205
>gi|328943879|ref|ZP_08241344.1| hypothetical protein HMPREF0091_10569 [Atopobium vaginae DSM 15829]
gi|327491848|gb|EGF23622.1| hypothetical protein HMPREF0091_10569 [Atopobium vaginae DSM 15829]
Length = 153
Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats.
Identities = 27/149 (18%), Positives = 66/149 (44%), Gaps = 4/149 (2%)
Query: 172 VQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSF 231
++ + + P LD++ + + SG+S + +L G L++ + +
Sbjct: 4 RKRNRMMCLQELPTLLDVITLGLSSGLSFEASLDLYCMHYNG---VLAQLFQRQLLQYRL 60
Query: 232 LP-NRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKK 290
+R+ A ++ + +D + T +IQ+ G+ + L R + E E++
Sbjct: 61 GVISRRAALQDIADDLHIDALTRFTSTVIQALECGSPLVGVLSDQAQSIRDAQRFELEEE 120
Query: 291 AASLGPKLTVPMIIFFLPVLILVIIGPAI 319
+ K+ +PM + +P +++ I+GP +
Sbjct: 121 IEKIPVKMLIPMGVLIVPAMLISIMGPLL 149
>gi|83716413|ref|YP_440463.1| Flp pilus assembly protein TadB [Burkholderia thailandensis E264]
gi|167617238|ref|ZP_02385869.1| Flp pilus assembly protein TadB [Burkholderia thailandensis Bt4]
gi|257141111|ref|ZP_05589373.1| Flp pilus assembly protein TadB [Burkholderia thailandensis E264]
gi|83650238|gb|ABC34302.1| Flp pilus assembly protein TadB [Burkholderia thailandensis E264]
Length = 325
Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats.
Identities = 56/295 (18%), Positives = 114/295 (38%), Gaps = 29/295 (9%)
Query: 33 IPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAI 92
+ G KR+++ +R + S L+ R + F +L ++
Sbjct: 26 WWNARHGPAAKRIEA------RIRAMSAGGQVQKERLSILKERMLNEAKPF-DRLLMRVP 78
Query: 93 LVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGA 152
V + + + +G +S+ L + L +P + + L P L V A
Sbjct: 79 RV-QTLDLLIEQSGL--TWSVVKLAWISLAIPFVVFVA----------LSFTPLPLWVAA 125
Query: 153 VILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIG 212
V I V P++ + +R ++R PDA D++ + +G + A+ V +
Sbjct: 126 VASIATVC--LPTLLVLRCRTRRLRKLERQLPDACDMIARALRAGHAFSSAISMVGGEFA 183
Query: 213 GQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSL 272
P+ E +T E+++ Q A N R + +R A++ G ++ + L
Sbjct: 184 D---PMGGEFRITFDEINYGVPLQEALLNLATRVPVPDLRYFVIAVLIQRETGGNLAELL 240
Query: 273 RVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP---VLILVIIGPAILSIID 324
+ R + + + S KL+ +I+ LP +L I+ P +S++
Sbjct: 241 DGIALLIRERFKLFDKIRVLSAEGKLSA-LILTLLPFGTAALLAIMNPDFISVLW 294
>gi|167579123|ref|ZP_02371997.1| Flp pilus assembly protein TadB [Burkholderia thailandensis TXDOH]
Length = 325
Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats.
Identities = 56/295 (18%), Positives = 114/295 (38%), Gaps = 29/295 (9%)
Query: 33 IPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAI 92
+ G KR+++ +R + S L+ R + F +L ++
Sbjct: 26 WWNARHGPAAKRIEA------RIRAMSAGGQVQKERLSILKERMLNEAKPF-DRLLMRLP 78
Query: 93 LVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGA 152
V + + + +G +S+ L + L +P + + L P L V A
Sbjct: 79 RV-QTLDLLIEQSGL--TWSVVKLAWISLAIPFVAFVA----------LSFTPLPLWVAA 125
Query: 153 VILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIG 212
V I V P++ + +R ++R PDA D++ + +G + A+ V +
Sbjct: 126 VASIATVC--LPTLLVLRCRTRRLRKLERQLPDACDMIARALRAGHAFSSAISMVGGEFA 183
Query: 213 GQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSL 272
P+ E +T E+++ Q A N R + +R A++ G ++ + L
Sbjct: 184 D---PMGGEFRITFDEINYGVPLQEALLNLATRVPVPDLRYFVIAVLIQRETGGNLAELL 240
Query: 273 RVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP---VLILVIIGPAILSIID 324
+ R + + + S KL+ +I+ LP +L I+ P +S++
Sbjct: 241 DGIALLIRERFKLFDKIRVLSAEGKLSA-LILTLLPFGTAALLAIMNPDFISVLW 294
>gi|239814536|ref|YP_002943446.1| type II secretion system protein [Variovorax paradoxus S110]
gi|239801113|gb|ACS18180.1| type II secretion system protein [Variovorax paradoxus S110]
Length = 330
Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats.
Identities = 54/317 (17%), Positives = 137/317 (43%), Gaps = 35/317 (11%)
Query: 4 YFFDLFDATELAVAITTAVSIFSLIYAVVIPSL-----GSGELEKRMKSVAVEREILRKQ 58
F +L T + +++ V++ +I + + G ++ KR+++++ + +
Sbjct: 1 MFQNLVGDTLITLSVLVFVTVLMVIEGLYMLWRSYRGPGVQKIGKRLQALSAATDRI--- 57
Query: 59 QITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLV 118
A +RL S +++++ LK + + + AG E++++ +L
Sbjct: 58 ---------AQARLVKDRVLSEAPWMQRVLLK-LPRAHRLDRFILQAGL--EWTVSHVL- 104
Query: 119 VRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSS 178
+ + G+++ F L P + +L+ G P +++++ +R +
Sbjct: 105 ------LACALSGMLFFFAMTSLANQPAWI----ALLVSAAGAAVPLLYLNHRRSRRLAH 154
Query: 179 IKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVA 238
++R PDALDL+ + +G S +++ + +++ S P++ E + E+ F + Q A
Sbjct: 155 LERQLPDALDLVTRALRAGHSFASSVQMIGDEM---SEPIAGEFRMVADEVGFGVSLQQA 211
Query: 239 FENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKL 298
N R + +R +++ G ++ + L L R + A + S +L
Sbjct: 212 LTNMSERVPLTDLRYFVVSVLIQRDSGGNLTEVLGNLSRLIRDRLKLLARVRVLSAEGRL 271
Query: 299 TVPMIIFFLPVLILVII 315
+ I+ +P ++ ++
Sbjct: 272 SA-WILGLMPFALVALL 287
>gi|253996762|ref|YP_003048826.1| type II secretion system protein [Methylotenera mobilis JLW8]
gi|253983441|gb|ACT48299.1| type II secretion system protein [Methylotenera mobilis JLW8]
Length = 322
Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats.
Identities = 57/320 (17%), Positives = 125/320 (39%), Gaps = 31/320 (9%)
Query: 9 FDATELAVAITTAVSIFSLIYAVVI-PSLGSGELEKRMKSVAVEREILRKQQITSLQKDS 67
D AI +++ + + + G KR++ R+ + +L K+
Sbjct: 1 MDYLYYLFAILAFLAVVLFLEGAYLAWNAYKGPEAKRIE---------RRLEAMTLGKEH 51
Query: 68 ASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIF 127
S+ ++ R + L+ + + + L +G +YS+ L + L+ ++
Sbjct: 52 ESTLVKQRMLANTPGVAS--MLQQVPRIQQLDKALLQSGL--QYSVAKFLGICLMFAVVG 107
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
+ + F V I++ V C P + + + QKR ++I++ P AL
Sbjct: 108 FAIALY------------FGANVLVSIIVAAVAACLPLLHMFSAKQKRINTIEQQLPSAL 155
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQ 247
DL+ + +G + AL+ V ++ P++ E + E+++ A N R
Sbjct: 156 DLMGRAMVAGHAFPSALQMVGTEM---PEPIASEFRIVFDEINYGIPTSEALMNLIQRVP 212
Query: 248 MDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFL 307
V A++ G ++ + L + R+ + + S +L+ ++
Sbjct: 213 STDVSYFVIAVLIQRETGGNLAELLGNISELIRARLKLLGSVRVLSAEGRLSAWILTLLP 272
Query: 308 PVL--ILVIIGPAILSIIDT 325
L +L ++ P LSI+ T
Sbjct: 273 FALGAVLQLVNPKFLSILWT 292
>gi|260462612|ref|ZP_05810818.1| type II secretion system protein [Mesorhizobium opportunistum
WSM2075]
gi|259031518|gb|EEW32788.1| type II secretion system protein [Mesorhizobium opportunistum
WSM2075]
Length = 324
Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats.
Identities = 45/195 (23%), Positives = 83/195 (42%), Gaps = 7/195 (3%)
Query: 121 LVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIK 180
L +FL+ G++ LL + + AVI+ VG P + + KR
Sbjct: 94 LAFAAVFLLAGLVLALMLPLLLGFS---AIVAVIVFLLVGLVLPLMVLRRARNKRIQKFA 150
Query: 181 RAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFE 240
PDALD+++ + +G A+ VA ++ PL E + E++F + + A
Sbjct: 151 AQLPDALDMIVRSLRAGHPTTVAIGLVAREMPD---PLGTEFGIVSDEITFGLSLEQAVR 207
Query: 241 NFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV 300
R + + + +L + G ++ + L L S R R + + KA S +++
Sbjct: 208 KLSQRVGFEGLHLLSVSLSIQAKTGGNLTEILANLSSVLRERRKLRMKIKALSAEGRMSA 267
Query: 301 PMIIFFLPVLILVII 315
II PV++ I+
Sbjct: 268 -WIISLFPVVMFGIL 281
>gi|254510017|ref|ZP_05122084.1| type II/IV secretion system protein, TadC subfamily
[Rhodobacteraceae bacterium KLH11]
gi|221533728|gb|EEE36716.1| type II/IV secretion system protein, TadC subfamily
[Rhodobacteraceae bacterium KLH11]
Length = 322
Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats.
Identities = 49/288 (17%), Positives = 114/288 (39%), Gaps = 30/288 (10%)
Query: 11 ATELAVAITTAVSIFSLIYAVVIPSLGSG-ELEKRMKSVAVEREILRKQQITSLQKDSAS 69
E + + V +F+L+ + + + G L R V +++ K + ++
Sbjct: 4 PVEALIYVVIFVGVFALVEGIYLVAFGKSISLNSR---VNRRLDMIDK----GVGREQVL 56
Query: 70 SRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLI 129
+LR + +++ + + L ++L D +++ + +L++ + +
Sbjct: 57 EQLRKEMQQHMKS--QSIPLYSLLAD------------KAQKAAIAFTPRQLIMIMALVS 102
Query: 130 LGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDL 189
+ E ++ + I IG V W++N +KR + I+ PDA++L
Sbjct: 103 GLVFMALSIATATEITLRIALSIAIGIGAVF-----TWVNNKAKKRMALIEEQLPDAVEL 157
Query: 190 LLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMD 249
++ + G +++ VA +I PL+ E + E ++ + A ++ R M
Sbjct: 158 MVRSLRVGNPFVSSIQIVANEIED---PLATEFGIISDESAYGRDVGEALKDMAERLDMQ 214
Query: 250 CVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPK 297
+R A+ + G ++ D L L R+ + A + K
Sbjct: 215 DLRFLAVAVSIQQQSGGNLADILAGLAKVIRARFRLFRRVNAITAEAK 262
>gi|218887823|ref|YP_002437144.1| type II secretion system protein [Desulfovibrio vulgaris str.
'Miyazaki F']
gi|218758777|gb|ACL09676.1| type II secretion system protein [Desulfovibrio vulgaris str.
'Miyazaki F']
Length = 321
Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats.
Identities = 58/311 (18%), Positives = 120/311 (38%), Gaps = 29/311 (9%)
Query: 14 LAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLR 73
L +A+ + +++F + V+ + G +R R + + + + L
Sbjct: 3 LVIAVLSVIAMFVFVMGVLDLAYGRRRAT-------AQRVGQRMENLLRAKNEQDRVDLE 55
Query: 74 TRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGII 133
R + S +++ ++ L A + + L A + L + ++ +LG
Sbjct: 56 RRRALSDVDWLHRM-LAAQSWTKKMDLALEQA----------QVRATLGMLLLASVLGAA 104
Query: 134 WIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLIC 193
F LL L V + +G P +W+ R +R PDALDL+
Sbjct: 105 SCFLVMHLLVNNLFLLVAPPLALG----YTPFLWVQRKRNARMGRFQRQLPDALDLIARA 160
Query: 194 VESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRN 253
+++G + +Q +R VA++ P+ E T+ E++F A N R ++
Sbjct: 161 LKAGHAFNQGMRMVADEFAD---PIGPEFQKTLDEINFGIPADAALYNLTRRVDCPDLKF 217
Query: 254 ATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPV---L 310
++ G ++ + + + R + + S +LT I+F LP
Sbjct: 218 FVVSVNIQRETGGNLAEIVTNIARLIRERFKLAGRVRVLSAEGRLTA-WILFVLPFGIGF 276
Query: 311 ILVIIGPAILS 321
I+ ++ P +S
Sbjct: 277 IINLLNPDFMS 287
>gi|308234328|ref|ZP_07665065.1| Type II secretion system F domain protein [Atopobium vaginae DSM
15829]
Length = 144
Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats.
Identities = 27/141 (19%), Positives = 63/141 (44%), Gaps = 4/141 (2%)
Query: 180 KRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLP-NRQVA 238
+ P LD++ + + SG+S + +L G L++ + + +R+ A
Sbjct: 3 LQELPTLLDVITLGLSSGLSFEASLDLYCMHYNG---VLAQLFQRQLLQYRLGVISRRAA 59
Query: 239 FENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKL 298
++ + +D + T +IQ+ G+ + L R + E E++ + K+
Sbjct: 60 LQDIADDLHIDALTRFTSTVIQALECGSPLVGVLSDQAQSIRDAQRFELEEEIEKIPVKM 119
Query: 299 TVPMIIFFLPVLILVIIGPAI 319
+PM + +P +++ I+GP +
Sbjct: 120 LIPMGVLIVPAMLISIMGPLL 140
>gi|303233432|ref|ZP_07320101.1| type II secretion system F domain protein [Atopobium vaginae
PB189-T1-4]
gi|302480561|gb|EFL43652.1| type II secretion system F domain protein [Atopobium vaginae
PB189-T1-4]
Length = 229
Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats.
Identities = 28/148 (18%), Positives = 65/148 (43%), Gaps = 4/148 (2%)
Query: 173 QKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFL 232
QKR+ + P LD++++ + +G+S D +L G L++ + +
Sbjct: 80 QKRRMVCLQQLPVLLDVVILGLSAGLSFDASLDLYCSHYQG---ALADAFSAVMLQERLG 136
Query: 233 -PNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKA 291
+++ A ++D + +++Q+ G+ + L R + E E++
Sbjct: 137 IVSKREALLKLDQDMKLDALSRFISSVVQALECGSPLVHILAGQAEAIRDAQRSELEEQI 196
Query: 292 ASLGPKLTVPMIIFFLPVLILVIIGPAI 319
+ K+ +PM +P +++ I+GP I
Sbjct: 197 EKVPVKMLIPMGTLIVPAMLISIVGPLI 224
>gi|85373128|ref|YP_457190.1| hypothetical protein ELI_01505 [Erythrobacter litoralis HTCC2594]
gi|84786211|gb|ABC62393.1| hypothetical protein ELI_01505 [Erythrobacter litoralis HTCC2594]
Length = 323
Score = 100 bits (250), Expect = 3e-19, Method: Composition-based stats.
Identities = 48/269 (17%), Positives = 104/269 (38%), Gaps = 19/269 (7%)
Query: 49 AVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVD--ENIVNKLRAAG 106
A + R + +S +++ ++ K++ K + A E + +L G
Sbjct: 29 AAKESQRRLNAVRYRHSESTDTKVESQLKKAIAARKPKAHRIAGSASRIEALELRLDRTG 88
Query: 107 FRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSV 166
++++ L V + +L + + L VGAVI G P
Sbjct: 89 --KGWTVSQYFYASLGVGLTVAVLIFL------RSGALLLSLGVGAVIGAG-----LPHF 135
Query: 167 WISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTI 226
+ + KR + +PDA++LL+ + SG+ + + L VA+++ G P+ E +
Sbjct: 136 VVGFFINKRTADFNSKFPDAIELLVRGLRSGLPVTETLAVVAQEVPG---PVGVEFKSIV 192
Query: 227 AELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLME 286
+ + ++ ++ + L G ++ ++L L R M+
Sbjct: 193 ERIKIGKTMEEGLQDTADKLNIPEFNFFCITLAIQRETGGNLAETLSNLSEVLRKRGQMK 252
Query: 287 AEKKAASLGPKLTVPMIIFFLPVLILVII 315
+ +A S K + I+ LP ++ +I
Sbjct: 253 LKIRAMSSESKASA-YIVGALPFIVFAMI 280
>gi|260439392|ref|ZP_05793208.1| putative bacterial type II secretion system protein F domain
protein [Butyrivibrio crossotus DSM 2876]
gi|292808188|gb|EFF67393.1| putative bacterial type II secretion system protein F domain
protein [Butyrivibrio crossotus DSM 2876]
Length = 388
Score = 100 bits (250), Expect = 3e-19, Method: Composition-based stats.
Identities = 62/279 (22%), Positives = 111/279 (39%), Gaps = 13/279 (4%)
Query: 47 SVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAG 106
SV + + + S +K S LR D + K I +E I +L
Sbjct: 120 SVINGFGEVNNKSLQSPEKVDISVELRYEDKYKTYKIPVVVLPKQITEEEQINTELSN-R 178
Query: 107 FRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSV 166
SE + + + +P +I+ K+L Y F + + LI Y P +
Sbjct: 179 INSEDTNSDYVK----LPEEIDGKKVIFYEKKKKILPYFFAMFLIIAFLIYYYKIYNPKI 234
Query: 167 WISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIG--GQSVPLSEEMLL 224
+KR + +P+ + L + + +G+S A ++ ED G++ P E +
Sbjct: 235 T----KEKRDKLLIADYPELVSKLSLLMGAGMSTYNAFIKITEDYRKTGKTKPAYELLSE 290
Query: 225 TIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGT-SIGDSLRVLVSETRSER 283
+ +S A+ F R + C L Q+ GT +I L+ + +R
Sbjct: 291 CLNRISSGITETDAYMEFGKRCNVMCYIKLGNLLAQNISKGTDNIFQLLKEETEKAFEDR 350
Query: 284 LMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
A+K G KL +PM + L V++++I+ PA +S
Sbjct: 351 KALAKKLGEEAGTKLLLPMTM-MLSVVLIIIVIPAFMSF 388
>gi|84687273|ref|ZP_01015153.1| Putative Flp pilus assembly protein TadB [Maritimibacter
alkaliphilus HTCC2654]
gi|84664706|gb|EAQ11190.1| Putative Flp pilus assembly protein TadB [Rhodobacterales bacterium
HTCC2654]
Length = 322
Score = 100 bits (250), Expect = 3e-19, Method: Composition-based stats.
Identities = 50/309 (16%), Positives = 116/309 (37%), Gaps = 31/309 (10%)
Query: 8 LFDATELAVAITTAVSIFSLIYAVVIPSLGSG-ELEKRMKSVAVEREILRKQQITSLQKD 66
+ +T++ + +++ L+ + + G L R+ +++ L+K
Sbjct: 1 MPFSTDIIIYGVIFIAVLLLVEGIYLTVFGKSISLNSRV-----------NRRLDMLEKG 49
Query: 67 SASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPII 126
+ ++ + K + + + + K NI + ++ +
Sbjct: 50 AGREQVLEQLRKEMHQHMNAKGMPLYSLLAEKAQK-----------ANIAFTPKQIMML- 97
Query: 127 FLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDA 186
L ++ G +R+ I +G G VWI+ +KR + + PDA
Sbjct: 98 MAGLSVVAYLGLTMGTGAGTGVRILLSIAMGVGGVY---VWINGKAKKRMAMFEEQLPDA 154
Query: 187 LDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRT 246
++L++ + G A++ VA+++ PL E+ + E ++ + + + R
Sbjct: 155 VELMVRSLRVGHPFSSAIQIVAKEVPD---PLGSEIGIIADESAYGRDIGDSLKAMAERM 211
Query: 247 QMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFF 306
M +R A+ G ++ + L L RS + KA + K + +
Sbjct: 212 DMQDLRFLAVAVTIQQTSGGNLAEILDGLAKVIRSRFKLFRRVKAITAEAKWSG-TFLSG 270
Query: 307 LPVLILVII 315
P+L +V+I
Sbjct: 271 FPILAIVMI 279
>gi|227818620|ref|YP_002822591.1| pilus assembly protein TadB [Sinorhizobium fredii NGR234]
gi|36958876|gb|AAQ87301.1| TadB-like protein involved in pilus formation and/or protein
secretion [Sinorhizobium fredii NGR234]
gi|227337619|gb|ACP21838.1| pilus assembly protein TadB [Sinorhizobium fredii NGR234]
Length = 332
Score = 100 bits (250), Expect = 3e-19, Method: Composition-based stats.
Identities = 55/316 (17%), Positives = 112/316 (35%), Gaps = 24/316 (7%)
Query: 13 ELAVAITTAVSIFSLIYAVVIP-SLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSR 71
+ + + + L+ A P ++ + +R + VA +I R + S
Sbjct: 8 PVLIFFLASSFVGGLMLAAFYPRTVKASAYRQRFERVAGHTQINRTGSADESRDRRRSVE 67
Query: 72 LRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILG 131
RD + + + K + +LR AG +S V + +L
Sbjct: 68 KTLRDIEEQQKAHVRKGRKP-----KLEARLRQAGL--GWSTRAYWVACAGTGLAIYVLV 120
Query: 132 IIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLL 191
+ G A+ G P ++ +R +P+A+D+++
Sbjct: 121 ALLGLG-----------AFAALGFATAGGLYLPHFHVNTTRNRRLKRFTAEFPNAVDVIV 169
Query: 192 ICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCV 251
+++G+ + LR +A + P+ E L + + A E R +
Sbjct: 170 RGLKAGLPMTDCLRVIAAEAQE---PVKGEFLTIAHDQTLGLPVDEAVERLCERMPLPEA 226
Query: 252 RNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMI--IFFLPV 309
R + R G S+ ++L L R + M+A+ KA S K + +I + F
Sbjct: 227 RFFAIVITIQSRTGGSLSEALGNLSKVLRERKKMKAKIKAMSAEAKSSAGIIGALPFFVA 286
Query: 310 LILVIIGPAILSIIDT 325
+ + P +S++ T
Sbjct: 287 GAVYLTSPDYMSLLFT 302
>gi|260574612|ref|ZP_05842615.1| type II secretion system protein [Rhodobacter sp. SW2]
gi|259023029|gb|EEW26322.1| type II secretion system protein [Rhodobacter sp. SW2]
Length = 322
Score = 100 bits (249), Expect = 3e-19, Method: Composition-based stats.
Identities = 52/306 (16%), Positives = 122/306 (39%), Gaps = 32/306 (10%)
Query: 15 AVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRT 74
+ I V++ L+ + + G KS+++ + R+ + L+K+S ++
Sbjct: 8 IIYILIFVAVVMLVEGIYLTVFG--------KSISLNSRVSRR--LALLEKNSNREQVLE 57
Query: 75 RDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIW 134
+ K + +K + + K + L + I +L +
Sbjct: 58 QLRKEMSQHLKARGIPLYSILAEKAQK------------ANIAFSPLALIGIMGLLAVFS 105
Query: 135 IFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICV 194
G + P Q+R+ I +G G VW++ +KR + ++ PDA++L++ +
Sbjct: 106 YLGLTIGTQAPTQVRILVAIAMGIGGVY---VWVNGKAKKRIALMEEQLPDAVELMVRSL 162
Query: 195 ESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNA 254
G A+ V++++ PL E + E ++ + + + F R +R
Sbjct: 163 RVGHPFASAIAIVSKEVAD---PLGTEFGIIGDEAAYGRDVTESLKAFAERMDNQDLRFL 219
Query: 255 TQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPV---LI 311
+ A+ + G ++ + L L R+ + KA + K + M + P+ ++
Sbjct: 220 SVAVTIQQQSGGNLAEILEGLAKVIRARFKLFRRVKAITAEAKWSG-MFLSAFPIGALVM 278
Query: 312 LVIIGP 317
++++ P
Sbjct: 279 ILMLKP 284
>gi|113867006|ref|YP_725495.1| flp pilus assembly protein TadB [Ralstonia eutropha H16]
gi|113525782|emb|CAJ92127.1| flp pilus assembly protein TadB [Ralstonia eutropha H16]
Length = 282
Score = 100 bits (249), Expect = 3e-19, Method: Composition-based stats.
Identities = 44/203 (21%), Positives = 86/203 (42%), Gaps = 10/203 (4%)
Query: 113 LNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLV 172
L I + +R V I + + + LL + V +L V P + +
Sbjct: 47 LFIFINMRQVAGISVVAVFAL------PLLTWLVSQNVFFAMLSIPVSLLLPRALVKKMQ 100
Query: 173 QKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFL 232
+KR +I+ PDAL ++ + +G S AL V + P+S+E L + E+
Sbjct: 101 RKRLMAIEDQMPDALLMMSSALRAGASFPMALESVVAESR---PPISQEFDLLMREVRLG 157
Query: 233 PNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAA 292
+ A N R + T A+ S G ++ ++L + R + ME + +A
Sbjct: 158 VDLMDALRNMEKRIPVPDFLMVTAAITISREVGGNLAETLESVARTLREKHQMEGKIRAL 217
Query: 293 SLGPKLTVPMIIFFLPVLILVII 315
+ K+ +++ LP+ ++V++
Sbjct: 218 TAQGKMQG-LVMTGLPLFLIVVL 239
>gi|296134294|ref|YP_003641541.1| Type II secretion system F domain protein [Thermincola sp. JR]
gi|296032872|gb|ADG83640.1| Type II secretion system F domain protein [Thermincola potens JR]
Length = 320
Score = 100 bits (249), Expect = 4e-19, Method: Composition-based stats.
Identities = 57/312 (18%), Positives = 123/312 (39%), Gaps = 30/312 (9%)
Query: 19 TTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSK 78
+ IF ++ L + +RM I R +Q T ++ + + ++S
Sbjct: 4 LVLLLIFGTVFVFSYFVLMAVTARRRM-------LIARMEQYTKRIYEADNRARKPKESI 56
Query: 79 SLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLN--ILLVVRLVVPIIFLILGIIWIF 136
+L+ +K I + + A +++ L +++ ++ + IL I+
Sbjct: 57 NLKKLFQK--SSKIFAARSFAKTMEAELIKADIPLRGEEFVLINVLCVLGMGILAFIFTG 114
Query: 137 GYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVES 196
+ + GF P + QKR + DAL ++ + +
Sbjct: 115 NF------------VLGWVGASAGFIVPKYVVKAAKQKRVARFNAQIGDALIIMANSLRA 162
Query: 197 GISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQ 256
G S QA+ V++++ P+S E + E++ + A +N NR + + +
Sbjct: 163 GFSFLQAMELVSKEM---PAPISVEFARALREMNLGTATEEALQNLCNRVESEDLDLVIT 219
Query: 257 ALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPV---LILV 313
A++ + G ++ L + R ++ E K + +++ MI+ LPV LIL
Sbjct: 220 AVLIQRQVGGNLSQILEGISHTIRERVRIKGEIKTLTAQGRISG-MIVGALPVGMGLILA 278
Query: 314 IIGPAILSIIDT 325
+I P + I+ +
Sbjct: 279 VINPGYIGILFS 290
>gi|332188385|ref|ZP_08390110.1| bacterial type II secretion system F domain protein [Sphingomonas
sp. S17]
gi|332011614|gb|EGI53694.1| bacterial type II secretion system F domain protein [Sphingomonas
sp. S17]
Length = 327
Score = 100 bits (249), Expect = 4e-19, Method: Composition-based stats.
Identities = 44/231 (19%), Positives = 91/231 (39%), Gaps = 16/231 (6%)
Query: 84 VKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLE 143
V K + + E + +L G ++++ + V + IL + + G LL
Sbjct: 70 VDKAFGRLLPNPEKLAKRLNRTG--RDWTVGQYGIACAAVAVGSTIL--LAMIGLPLLLA 125
Query: 144 YPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQA 203
P + +G P + +S + +R + +PDA++LL+ + SG+ I +
Sbjct: 126 LPMGV---------GLGLLVPHMVVSMTINRRTTKFIARFPDAIELLVRGLRSGLPITET 176
Query: 204 LRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDR 263
+ V ++I G P+ +E + A + +R + + A+
Sbjct: 177 MSVVGQEIPG---PVGDEFRAVSDRMKIGRTMDAALQETADRLETPEFQFFVIAIAIQRE 233
Query: 264 YGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVI 314
G ++ ++L L R M+ + KA S K + +I V+ +I
Sbjct: 234 TGGNLAETLSNLAEVLRKRAQMKLKIKAMSSESKASAYIIGALPFVVFAMI 284
>gi|260892928|ref|YP_003239025.1| Type II secretion system F domain protein [Ammonifex degensii KC4]
gi|260865069|gb|ACX52175.1| Type II secretion system F domain protein [Ammonifex degensii KC4]
Length = 313
Score = 100 bits (249), Expect = 4e-19, Method: Composition-based stats.
Identities = 52/254 (20%), Positives = 107/254 (42%), Gaps = 14/254 (5%)
Query: 50 VEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRS 109
+RE LR+ L + + L+ +K L L+A + + +L ++
Sbjct: 20 EQREELRRAIWQRLSESKGGGARVFSWRERLQGGLKAL-LEASSLTSRLRARLERELSQA 78
Query: 110 EYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWIS 169
+ L FL++ +++ FG L Y I +G P +++
Sbjct: 79 DLPLR---------GEEFLLMQLVFFFG-GGWLGYAGIHSFLGAIAGAALGGLVPFLYLR 128
Query: 170 NLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAEL 229
+L ++R + + PDAL L+ + +G + QA+ V ++ P+S+E T+AEL
Sbjct: 129 HLRRQRLARFQSQLPDALSLMANTMRAGFGMLQAMDVVRREM---PPPISQEFGRTLAEL 185
Query: 230 SFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEK 289
+ A E +R D + A A+I + G ++ + L + + R ++ E
Sbjct: 186 GLGMGVEEALERLSHRVPSDDLDLAVTAVIIQRQVGGNLAEILDNIATTIRERVRLKGEI 245
Query: 290 KAASLGPKLTVPMI 303
+A + +++ +I
Sbjct: 246 RALTAQGRISALII 259
>gi|210614117|ref|ZP_03290053.1| hypothetical protein CLONEX_02266 [Clostridium nexile DSM 1787]
gi|210150818|gb|EEA81826.1| hypothetical protein CLONEX_02266 [Clostridium nexile DSM 1787]
Length = 430
Score = 100 bits (249), Expect = 4e-19, Method: Composition-based stats.
Identities = 34/160 (21%), Positives = 65/160 (40%), Gaps = 7/160 (4%)
Query: 169 SNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQ-----SVPLSEEML 223
+ R+ + +P+ ++ + + +G++ R+ ++ Q EEM
Sbjct: 270 QKARKARKEQMLTDYPEIINKFALLLSTGMTTKNVWERIVKNYEEQKICTGERAAYEEMR 329
Query: 224 LTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGT-SIGDSLRVLVSETRSE 282
T E+ A+E F R + L Q+ + GT + D LR +
Sbjct: 330 YTCNEMQSGITEAEAYERFGKRCGISVYMKFGALLAQNLKKGTKGMTDLLRNESDQAFEN 389
Query: 283 RLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
R A++ G KL PM L ++++++I PA LS+
Sbjct: 390 RKSRAKRLGEEAGTKLLAPM-FGMLAIVLVIVIVPAFLSM 428
>gi|218677458|ref|ZP_03525355.1| putative component of pilus protein [Rhizobium etli CIAT 894]
Length = 136
Score = 99 bits (248), Expect = 4e-19, Method: Composition-based stats.
Identities = 43/120 (35%), Positives = 73/120 (60%), Gaps = 2/120 (1%)
Query: 1 MPHYFFDLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQI 60
M + +A+ A+++F+ Y + +P G+L KRMK+V+ ERE +R ++
Sbjct: 1 MSQDLAATLTNPSMLIALLVAIAVFATFYTIAVPFFERGDLSKRMKAVSTEREQIRARER 60
Query: 61 TSLQKD--SASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLV 118
+ + + + LR+++++S+R V++ NL+ LVD+N VNKLRAAG RSE +LN LV
Sbjct: 61 ARMNTEPGAGKASLRSQNNRSVRQIVERFNLRKALVDDNTVNKLRAAGLRSENALNTFLV 120
>gi|85713509|ref|ZP_01044499.1| type II secretion system protein [Nitrobacter sp. Nb-311A]
gi|85699413|gb|EAQ37280.1| type II secretion system protein [Nitrobacter sp. Nb-311A]
Length = 324
Score = 99 bits (248), Expect = 4e-19, Method: Composition-based stats.
Identities = 61/320 (19%), Positives = 125/320 (39%), Gaps = 29/320 (9%)
Query: 9 FDATELAVAITTAVSIFSLIYAVVIPSLGSG-ELEKRMKSVAVEREILRKQQITSLQKDS 67
+ LA+ A ++ + + + P+L + EKR + A +R+ +
Sbjct: 1 MNLQTLALGFMAATAVGGVAWVFLYPALSGEMKAEKRRAAFARTTPAIRQVDRAQRSR-- 58
Query: 68 ASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIF 127
R + SLR ++ L + +++ AG +S L+V V+ +I
Sbjct: 59 -----REQIEGSLREIEQRQKRDRKL---TLNHRIAQAGLS--WSKEKFLIVSGVLAMIC 108
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
+ +I G F G P + L Q+R+++ RA PDA+
Sbjct: 109 FSVPMILGAGPLAAAGLAFAAGFGV-----------PRWLLGFLKQRRETAFLRALPDAV 157
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQ 247
D+++ +++G+ + ++L+ V D PL E I + A Y R
Sbjct: 158 DVIVRGIKAGLPLFESLKVVVAD---SPEPLKSEFAAIIETQAVGMPLGEACSRLYERMP 214
Query: 248 MDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFL 307
+ + + G ++ ++L L R + M + KA S K + +I
Sbjct: 215 VPEANFFGIVIAIQQKSGGNLSEALGNLSKVLRDRKKMAEKIKAVSTEAKASAAIIGSLP 274
Query: 308 PVLILV--IIGPAILSIIDT 325
P+++L+ + P ++++ T
Sbjct: 275 PIVMLLVYLSTPDYIALLWT 294
>gi|163738366|ref|ZP_02145781.1| type II secretion system protein [Phaeobacter gallaeciensis BS107]
gi|163742217|ref|ZP_02149605.1| type II/IV secretion system protein, TadC subfamily [Phaeobacter
gallaeciensis 2.10]
gi|161384547|gb|EDQ08928.1| type II/IV secretion system protein, TadC subfamily [Phaeobacter
gallaeciensis 2.10]
gi|161388287|gb|EDQ12641.1| type II secretion system protein [Phaeobacter gallaeciensis BS107]
Length = 322
Score = 99 bits (248), Expect = 4e-19, Method: Composition-based stats.
Identities = 45/287 (15%), Positives = 109/287 (37%), Gaps = 28/287 (9%)
Query: 11 ATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASS 70
+ E + + + L+ + + + G KS+++ + R+ ++ + K
Sbjct: 4 SAEPIIYGLIFIGVLVLVEGLYLVTFG--------KSISLNSRVNRRLEM--MDKGGNRE 53
Query: 71 RLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLIL 130
++ + K +R + ++ + R++ + +L++ + +
Sbjct: 54 QVLEQLRKEMRQHMSAKSIPLYSLLAE----------RAQKAAIAFSPRQLILIMGGVAA 103
Query: 131 GIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLL 190
E P +L +I +G V F W++ KR + I+ PDA++L+
Sbjct: 104 IAFVGLSVGTSAELPLRLLASVIIGVGAVFF-----WVNKKAAKRMAMIEEQLPDAVELM 158
Query: 191 LICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDC 250
+ + G A++ VA ++ PL+ E + E ++ + A + R M
Sbjct: 159 VRSLRVGHPFSSAVQIVANEVED---PLATEFGVIADESAYGRDVGEALKEMAERLDMQD 215
Query: 251 VRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPK 297
+R A+ + G ++ + L L R+ + KA + +
Sbjct: 216 MRFLAVAVTIQQQSGGNLAEVLAGLAKVIRARFRLFRRVKAITAEAQ 262
>gi|160893699|ref|ZP_02074483.1| hypothetical protein CLOL250_01253 [Clostridium sp. L2-50]
gi|156864684|gb|EDO58115.1| hypothetical protein CLOL250_01253 [Clostridium sp. L2-50]
Length = 434
Score = 99 bits (248), Expect = 4e-19, Method: Composition-based stats.
Identities = 48/192 (25%), Positives = 86/192 (44%), Gaps = 9/192 (4%)
Query: 134 WIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLIC 193
+ K + PF + + + IG + C + QKR + +A+P +DLL +
Sbjct: 249 YAITTKKSIPLPFIVFLL-CVSIGVLLVCKGYSDLHKAGQKRNQELMQAYPSFVDLLSLY 307
Query: 194 VESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRN 253
+ +G+++ AL ++ S LSEE+ T+ E+ + NR ++
Sbjct: 308 MGAGLTVKGALLKIVT--MTDSRILSEEINYTLNEIRSGIPETEGYYRLGNRLELPVYLK 365
Query: 254 ATQALIQSDRYGTSIGDSLRVLVSE---TRSERLMEAEKKAASLGPKLTVPMIIFFLPVL 310
L Q+ R GT D L +L E + A+KK G +L PMI+ L V+
Sbjct: 366 MMTLLSQNIRKGTR--DILNMLAEEELSALQLKRELAKKKGEEAGTRLLFPMIL-QLGVV 422
Query: 311 ILVIIGPAILSI 322
++++I PA++
Sbjct: 423 MIIVIAPALMGF 434
>gi|148272482|ref|YP_001222043.1| putative pilus assembly protein [Clavibacter michiganensis subsp.
michiganensis NCPPB 382]
gi|147830412|emb|CAN01347.1| conserved membrane protein, putative pilus assembly protein
[Clavibacter michiganensis subsp. michiganensis NCPPB
382]
Length = 316
Score = 99 bits (248), Expect = 5e-19, Method: Composition-based stats.
Identities = 48/212 (22%), Positives = 82/212 (38%), Gaps = 8/212 (3%)
Query: 108 RSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVW 167
RS + ++L + I L+ G + G P V + G A
Sbjct: 106 RSRQLVGLVLGAAAGIVIAALLGGAAVVAG-----GLPQAQLVAVPFVAAVAGLVACDTA 160
Query: 168 ISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIA 227
+ ++R + I+ P L+ L + + +G + ALRRVA S L+ E+ +A
Sbjct: 161 LERRAKRRIARIQAELPTVLEFLALSLAAGEGLLDALRRVA---RVGSGELAMELGRVVA 217
Query: 228 ELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEA 287
++ AF++ R M V L S GT + + LR + R E
Sbjct: 218 DVGTGIPVTRAFDDLARRLAMPAVSRLVDQLAGSLERGTPLAEVLRAQAQDAREVAKREL 277
Query: 288 EKKAASLGPKLTVPMIIFFLPVLILVIIGPAI 319
+ A + VP++ LP+ I+ + P I
Sbjct: 278 LESAGRKEVGMLVPLVFLILPLTIVFALFPGI 309
>gi|254461341|ref|ZP_05074757.1| type II secretion system protein [Rhodobacterales bacterium
HTCC2083]
gi|206677930|gb|EDZ42417.1| type II secretion system protein [Rhodobacteraceae bacterium
HTCC2083]
Length = 322
Score = 99 bits (248), Expect = 5e-19, Method: Composition-based stats.
Identities = 37/187 (19%), Positives = 78/187 (41%), Gaps = 12/187 (6%)
Query: 126 IFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPD 185
I ++ + G + +R+ A + IG G +WIS+ +KR S ++ PD
Sbjct: 97 IMGMVCVFAFLGLTIGTQTSIGVRIIASVGIGVGGVF---MWISHKAKKRMSMLEEQLPD 153
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
A++L++ + G A++ VA+++ PL+ EM + E ++ + A + R
Sbjct: 154 AVELMVRSLRVGHPFSSAVQIVAKEVQD---PLASEMGVIADESAYGRDVGEALKAMAER 210
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPK------LT 299
+R A+ + G ++ + L L R+ + KA + + +
Sbjct: 211 LDNQDLRFLAVAVTIQQQSGGNLAEILAGLAQVIRARFRLFRRVKAITAEAQWSGKFLSS 270
Query: 300 VPMIIFF 306
P++
Sbjct: 271 FPLMALV 277
>gi|126737250|ref|ZP_01752985.1| type II/IV secretion system protein, TadC subfamily [Roseobacter
sp. SK209-2-6]
gi|126721835|gb|EBA18538.1| type II/IV secretion system protein, TadC subfamily [Roseobacter
sp. SK209-2-6]
Length = 322
Score = 99.6 bits (247), Expect = 5e-19, Method: Composition-based stats.
Identities = 38/194 (19%), Positives = 81/194 (41%), Gaps = 7/194 (3%)
Query: 123 VPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRA 182
+ +I + + G LR+ A I+IG G W++ R + I+
Sbjct: 94 LMLIMMGVAAFAFAGLSVGTSTGLPLRIMASIVIGVGGVF---FWVNKKAATRMAKIEEQ 150
Query: 183 WPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENF 242
PDA++L++ + G ++ V+++I PL+ E + E ++ + A +
Sbjct: 151 LPDAVELMVRSLRVGHPFTSTVQIVSDEIED---PLATEFGIIADESAYGRDIGEALKEM 207
Query: 243 YNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVP- 301
R + +R + A+ + G ++ + L L R+ + + KA + K +
Sbjct: 208 AERLNIQDLRFLSVAVTIQQQSGGNLAEVLAGLAGVIRARFRLFRKVKAITAEAKWSGKF 267
Query: 302 MIIFFLPVLILVII 315
+ F L LI +++
Sbjct: 268 LSAFPLLALIAILV 281
>gi|32473986|ref|NP_866980.1| secretion system protein TadB [Rhodopirellula baltica SH 1]
gi|32444523|emb|CAD74522.1| secretion system protein TadB [Rhodopirellula baltica SH 1]
Length = 347
Score = 99.6 bits (247), Expect = 6e-19, Method: Composition-based stats.
Identities = 39/195 (20%), Positives = 80/195 (41%), Gaps = 5/195 (2%)
Query: 121 LVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIK 180
L V +I G + G + P + +G ++ +VG AP ++ ++R
Sbjct: 116 LTVTKFAMICGGCFAAGMVLCVVTPIPILLGPIVGATFVG--APVFYVMFKRKRRLKRFG 173
Query: 181 RAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFE 240
P+AL+LL + +G S++ V +++ PL+ E E F + E
Sbjct: 174 EQIPEALELLGRSLRAGHSLNAGFGLVGDEMEA---PLATEFRRCFEEQKFGIPLDESIE 230
Query: 241 NFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV 300
+ R +R A+I + G + + L + R + +A + +++
Sbjct: 231 DMAERVPNMDLRFFATAVILQRQTGGDLSEILDKIGHLVRERLQILGTIQALTGEGRMSG 290
Query: 301 PMIIFFLPVLILVII 315
+++ PVL LV++
Sbjct: 291 AVLLALPPVLFLVML 305
>gi|319785604|ref|YP_004145080.1| type II secretion system F domain [Mesorhizobium ciceri biovar
biserrulae WSM1271]
gi|317171492|gb|ADV15030.1| Type II secretion system F domain [Mesorhizobium ciceri biovar
biserrulae WSM1271]
Length = 337
Score = 99.6 bits (247), Expect = 6e-19, Method: Composition-based stats.
Identities = 52/321 (16%), Positives = 118/321 (36%), Gaps = 31/321 (9%)
Query: 9 FDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSA 68
D T LA + S ++ YA + + + K V E +R + ++
Sbjct: 4 IDGTVLAFVVLAGFSAGAVAYAFLFTRISNE------KQVGKRLETIRTAETDRSVVKAS 57
Query: 69 SSRLRT--RDSKSLRNFVKKLNLKAILVDENIVN-----KLRAAGFRSEYSLNILLVVRL 121
R+ + KS+++ + +L+ K D + +LR AG + ++ +
Sbjct: 58 RDRVAEAAKRRKSVQDSLNELDAKQKTKDSRVKKPPLKAQLRQAGL--KTTIERFYIYSA 115
Query: 122 VVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKR 181
+ I+ + + L +G +++ +R +
Sbjct: 116 ICGIVLTMAAFVAGAPLIALPGVLLAGGLGLP-----------RWFVTFRRARRVKAFLN 164
Query: 182 AWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFEN 241
+P+ALD+++ V+SG+ ++ A+R +A + P+ E + + A
Sbjct: 165 EFPNALDIIVRAVKSGLPLNDAVRLIANE---SPEPVKTEFRRIVDSQQMGLSIPDATLR 221
Query: 242 FYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVP 301
+ + G ++ ++L L R + M+A+ A S+ K +
Sbjct: 222 MPETMPCTEASFFGIVIQIQSQAGGNLSEALGNLSRVLRDRKKMKAKVAALSMEAKASAA 281
Query: 302 MI--IFFLPVLILVIIGPAIL 320
+I + F+ ++ + PA L
Sbjct: 282 IIGALPFIVAFLVYLSSPAYL 302
>gi|257790636|ref|YP_003181242.1| type II secretion system protein [Eggerthella lenta DSM 2243]
gi|257474533|gb|ACV54853.1| type II secretion system protein [Eggerthella lenta DSM 2243]
Length = 288
Score = 99.6 bits (247), Expect = 6e-19, Method: Composition-based stats.
Identities = 66/303 (21%), Positives = 126/303 (41%), Gaps = 27/303 (8%)
Query: 20 TAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKS 79
A+S+ + A ++ LG L ++S V+R R++ T L + S
Sbjct: 9 VALSLCAATVAGLLSFLGLRRLGG-IESGPVKRPSRRRRGETRLDTLTYS---------- 57
Query: 80 LRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYD 139
V + + V + + L +G + +R+ G+I +
Sbjct: 58 ----VTRYVPMSEKVADATRDMLSRSGVTMPAA--SFWAIRVASFSAGAAAGLIAMPLVG 111
Query: 140 KLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGIS 199
+ + L AP W+ + + + R PDALDL+ IC+ +G S
Sbjct: 112 GVQGLAAAGALAVAGLA------APQAWLLARRAEWRDELDRQLPDALDLMAICISAGSS 165
Query: 200 IDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALI 259
+ AL V + G ++E E + +R A +R Q++ + T +L+
Sbjct: 166 FEGALASVGTRMDG---AIAEAFARVAKE-AAYSSRSEALLGLADRAQVNSITFFTASLV 221
Query: 260 QSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAI 319
Q++R G+S+ D +R+ R+ER + + L K+ PM++ LP +I++++ P I
Sbjct: 222 QAERAGSSLVDIIRMQAQSVRTERRLRVDDMTNKLSTKMLFPMLLLMLPSIIMLMLAPMI 281
Query: 320 LSI 322
L +
Sbjct: 282 LQL 284
>gi|114764950|ref|ZP_01444123.1| type II/IV secretion system protein, TadC subfamily [Pelagibaca
bermudensis HTCC2601]
gi|114542662|gb|EAU45686.1| type II/IV secretion system protein, TadC subfamily [Roseovarius
sp. HTCC2601]
Length = 321
Score = 99.6 bits (247), Expect = 7e-19, Method: Composition-based stats.
Identities = 36/190 (18%), Positives = 80/190 (42%), Gaps = 8/190 (4%)
Query: 108 RSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVW 167
R++ + +L++ + + + FG E +RV I +G G +W
Sbjct: 80 RAQKAALAFTPNQLILMMAG--VSVFAFFGLTAGTEAGLGVRVMIAIGMGVGGVF---MW 134
Query: 168 ISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIA 227
++ +KR + I+ PDA++L++ + G A+ V+++I PL+ E +
Sbjct: 135 VNGKAKKRLALIEEQLPDAVELMVRSLRVGHPFSSAIAVVSKEIKD---PLATEFGVIAD 191
Query: 228 ELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEA 287
E ++ + + ++ R M +R A+ + G ++ + L L R+ +
Sbjct: 192 ESTYGRDIGESLKHMAERLDMQDLRFLAVAVSIQQQSGGNLAEILEGLAKVIRARFRLFR 251
Query: 288 EKKAASLGPK 297
KA + +
Sbjct: 252 RVKAITAEAQ 261
>gi|253576286|ref|ZP_04853617.1| type II secretion system protein [Paenibacillus sp. oral taxon 786
str. D14]
gi|251844413|gb|EES72430.1| type II secretion system protein [Paenibacillus sp. oral taxon 786
str. D14]
Length = 291
Score = 99.2 bits (246), Expect = 7e-19, Method: Composition-based stats.
Identities = 44/193 (22%), Positives = 81/193 (41%), Gaps = 3/193 (1%)
Query: 132 IIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLL 191
I +FG L +G +L + A + VQ+R+ ++ P+ L+ ++
Sbjct: 98 ICLLFGCLMTLLSDGPAGLGIGVLFAVLVPMALLNDLHRKVQRREQAVLLELPELLNKIV 157
Query: 192 ICVESGISIDQALRRVAEDIGGQ-SVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDC 250
+ V +G ++ QA++ E Q PL E+L E + Q A E F R +
Sbjct: 158 LLVGAGSTVQQAMKLCLERKREQIGHPLYRELLQMQKEWEGGDSFQQAMEGFSKRCGIQE 217
Query: 251 VRNATQALIQSDRYGT-SIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPV 309
V T A++ + R G +LR L +R KL PM++ F+
Sbjct: 218 VSAFTTAVLLNYRRGGEDFALALRDLSHSLWEKRKAVGRTLGEQASSKLVFPMVLLFM-A 276
Query: 310 LILVIIGPAILSI 322
+++++ PA + +
Sbjct: 277 VLILVGAPAFMIM 289
>gi|148557758|ref|YP_001265340.1| type II secretion system protein [Sphingomonas wittichii RW1]
gi|148502948|gb|ABQ71202.1| type II secretion system protein [Sphingomonas wittichii RW1]
Length = 324
Score = 99.2 bits (246), Expect = 7e-19, Method: Composition-based stats.
Identities = 53/299 (17%), Positives = 112/299 (37%), Gaps = 23/299 (7%)
Query: 19 TTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSK 78
+ + + + V I L ++ + A +R + + + + S+
Sbjct: 4 MLFLMVMAAVVPVFIFVLARPPAQR---AFARRLSTVRGRYNVNGEPGVNEQVRKLLASR 60
Query: 79 SLRNFVKKLNLKAILVD-ENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFG 137
+ +K L L D +I +++ AAG ++++ G + F
Sbjct: 61 ATVVRREKTLLNRFLPDPADIHHQIEAAG--KKWTVRQYYT------------GSGFAFA 106
Query: 138 YDKLLEYPFQLRVGAVILIGYV-GFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVES 196
LL L +++G G P + ++ L ++R + +PDA++LL+ + +
Sbjct: 107 VPMLLLMLVGLPAWMALIVGAAAGLGLPRLVLNILAKRRIAQFITRFPDAIELLVRGLRA 166
Query: 197 GISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQ 256
G+ I + + VA +I G P+ E + + A + +R +
Sbjct: 167 GLPIAETMGAVASEIEG---PVGSEFQAVSDRMRIGRTLEGALQETADRLGTAEFQFFVI 223
Query: 257 ALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVII 315
L G ++ ++L L R M+ + A S K + II LP ++ +I
Sbjct: 224 TLAIQRETGGNLAETLGNLADVLRKRMQMKLKISAMSSESKASA-YIIGVLPFVVFGLI 281
>gi|163745842|ref|ZP_02153201.1| type II secretion system protein, putative [Oceanibulbus indolifex
HEL-45]
gi|161380587|gb|EDQ04997.1| type II secretion system protein, putative [Oceanibulbus indolifex
HEL-45]
Length = 320
Score = 99.2 bits (246), Expect = 8e-19, Method: Composition-based stats.
Identities = 54/305 (17%), Positives = 116/305 (38%), Gaps = 30/305 (9%)
Query: 11 ATELAVAITTAVSIFSLIYAVVIPSLGSG-ELEKRMKSVAVEREILRKQQITSLQKDSAS 69
+ E + + + L+ + + + G L R V E+L K ++
Sbjct: 2 SAEPIIYGLIFIGVLVLVEGLYLVAFGKSISLNSR---VNRRLEMLEKGAR----REEVL 54
Query: 70 SRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLI 129
+LR + + K + L ++L + R++ + +L++ I
Sbjct: 55 DKLRKEMQQHMN--AKSIPLYSLLSE------------RAQKAAIAFTPQQLLM--IMAG 98
Query: 130 LGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDL 189
L + G + +R +++G W+S+ KR S I+ PDA++L
Sbjct: 99 LAAVAFLGLTIGTDTSVSVRALMSLVMGVGAVF---FWVSHKAGKRMSMIEEQLPDAVEL 155
Query: 190 LLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMD 249
++ + G A+ V+++I PL+ E + E ++ + A ++ R M
Sbjct: 156 MVRSLRVGHPFSNAISIVSKEIQD---PLASEFGVIADEAAYGRDLGEALKDMAERLDMQ 212
Query: 250 CVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPV 309
+R A+ + G ++ + L L R+ + KA + K + + F
Sbjct: 213 DLRFLAVAVTIQQQSGGNLAEILAGLAKVIRARFRLFRRVKAITAEAKWSGKFLSGFPLA 272
Query: 310 LILVI 314
++VI
Sbjct: 273 ALVVI 277
>gi|291541801|emb|CBL14911.1| Bacterial type II secretion system protein F domain [Ruminococcus
bromii L2-63]
Length = 291
Score = 99.2 bits (246), Expect = 8e-19, Method: Composition-based stats.
Identities = 38/216 (17%), Positives = 81/216 (37%), Gaps = 11/216 (5%)
Query: 108 RSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVW 167
SEY L + ++ + +L I +L + + + +
Sbjct: 84 YSEYYLRTIHSQQITIAFTLFVLSFILYGLASDVL------ALIVGFVFAGLAYYYFGTV 137
Query: 168 ISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIA 227
+ KR + + + + L + +G+ + +A + VA G S + EM T+
Sbjct: 138 TKKRILKRSDELLHDFSEVVSKLALLTNAGMILREAWQEVA--FAGTST-IYTEMQTTVN 194
Query: 228 ELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTS-IGDSLRVLVSETRSERLME 286
E++ + A NF +R + ++ T +IQ G S + L+ E +
Sbjct: 195 EMNNGVSEIDAMFNFGSRCIIPEIKKFTSTIIQGMTKGNSELTAMLQEQSKEVWQLKKQL 254
Query: 287 AEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
++ KL +P I ++++II P ++
Sbjct: 255 VRREGEKAASKLLIP-ICVMFVGILIMIIVPIFTNL 289
>gi|186474107|ref|YP_001861449.1| type II secretion system protein [Burkholderia phymatum STM815]
gi|184196439|gb|ACC74403.1| type II secretion system protein [Burkholderia phymatum STM815]
Length = 326
Score = 99.2 bits (246), Expect = 8e-19, Method: Composition-based stats.
Identities = 63/314 (20%), Positives = 117/314 (37%), Gaps = 28/314 (8%)
Query: 9 FDATELAVAITTAVSIFSLIYAVVIPSLGS-GELEKRMKSVAVEREILRKQQITSLQKDS 67
D T LA A+ V+I LI + + G + KRM + +R
Sbjct: 1 MDTTLLAFAVLGFVAIVLLIEGLYVFWNSRHGPVVKRMDA------RIRAMSAGGHVSGE 54
Query: 68 ASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIF 127
S L+ R F + L + ++ L+ +G +S+ +
Sbjct: 55 QMSILKQRLLSESPTFTRVLMRVPRVHLLDLY--LQQSGL--PWSVGRFVGYSAASAFG- 109
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
+L V + + P V++ + KR ++R PDA
Sbjct: 110 ----------GLLFGMGGMRLPVVLALPVAGGAALLPLVYLRSRRAKRVVQLERLLPDAA 159
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQ 247
DL+ + +G S AL VA+++ PL E + E++ + A N +R
Sbjct: 160 DLIARALRAGHSFPAALGMVADEL---PQPLGGEFRIAFDEINCGVSMNDALMNLVSRVP 216
Query: 248 MDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFL 307
+D VR A++ G ++ + L + + R + A+ + S +L+ I+ L
Sbjct: 217 VDDVRYFVIAVLIQREAGGNLAEILGNIATIIRERLKLLAKVRVLSAEGRLSA-WILGLL 275
Query: 308 PVLILVIIGPAILS 321
P +VI ++L+
Sbjct: 276 P--FIVIAALSVLN 287
>gi|254476377|ref|ZP_05089763.1| type II secretion system protein [Ruegeria sp. R11]
gi|214030620|gb|EEB71455.1| type II secretion system protein [Ruegeria sp. R11]
Length = 322
Score = 99.2 bits (246), Expect = 9e-19, Method: Composition-based stats.
Identities = 47/287 (16%), Positives = 111/287 (38%), Gaps = 28/287 (9%)
Query: 11 ATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASS 70
+ E + + + L+ + + + G KS+++ ++ R+ ++ + K +
Sbjct: 4 SAEPIIYGLIFIGVLVLVEGLYLVTFG--------KSISLNSKVNRRLEM--MDKGANRE 53
Query: 71 RLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLIL 130
++ + K +R + ++ + R++ + +L++ + +
Sbjct: 54 QVLEQLRKEMRQHMSAKSIPLYSLLAE----------RAQKAAIAFTPRQLIL--VMAGV 101
Query: 131 GIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLL 190
+ G LRV A I+IG W++ KR S I+ PDA++L+
Sbjct: 102 AALAFVGLSVGTSAEVPLRVMASIIIGVGAVF---FWVNKKAAKRMSMIEEQLPDAVELM 158
Query: 191 LICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDC 250
+ + G A++ VA ++ PL+ E + E ++ + A + R M
Sbjct: 159 VRSLRVGHPFASAVQIVANEVED---PLATEFGIIADESAYGRDVGEALKEMAERLDMQD 215
Query: 251 VRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPK 297
+R A+ + G ++ + L L R+ + KA + +
Sbjct: 216 MRFLAVAVTIQQQSGGNLAEVLAGLAKVIRARFRLFRRVKAITAEAQ 262
>gi|325109818|ref|YP_004270886.1| type II secretion system F domain protein [Planctomyces
brasiliensis DSM 5305]
gi|324970086|gb|ADY60864.1| Type II secretion system F domain protein [Planctomyces
brasiliensis DSM 5305]
Length = 319
Score = 98.8 bits (245), Expect = 9e-19, Method: Composition-based stats.
Identities = 51/286 (17%), Positives = 99/286 (34%), Gaps = 32/286 (11%)
Query: 6 FDLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQK 65
F L +++ + A + ++ +EKR+ RE R + +
Sbjct: 3 FGLIVSSDYFWPVLLAY-LSAVALVAEWLLTDRNRIEKRL------REEGRVRLRQKAHQ 55
Query: 66 DSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPI 125
+ + + + + L + D AG + L
Sbjct: 56 SRLFKDWKVAEDGAEDSSARWLERWQLFAD--------QAGLNWNGWKLLQLS------- 100
Query: 126 IFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPD 185
+W G LL P L + FC PSV+ +R ++++ P+
Sbjct: 101 -------LWSAGLVALLVIPLHLGTAWSAGLSLAAFCIPSVYAVQRRNQRINTLRDQLPE 153
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
DL+ +ESG +I A + V+ GG P+++E + + ++ + R
Sbjct: 154 TFDLMSRAIESGQTISGAFQLVSTQCGG---PIAKEFQHCCQQQNLGLPYEITLRDLARR 210
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKA 291
T + ++ ALI + G D L+ L R+ + + KA
Sbjct: 211 TGVMELQMFAVALIVQRQAGGDPSDVLKNLAEAVRNRIKLAMKVKA 256
>gi|149200851|ref|ZP_01877826.1| type II secretion system protein [Roseovarius sp. TM1035]
gi|149145184|gb|EDM33210.1| type II secretion system protein [Roseovarius sp. TM1035]
Length = 322
Score = 98.8 bits (245), Expect = 1e-18, Method: Composition-based stats.
Identities = 52/274 (18%), Positives = 109/274 (39%), Gaps = 20/274 (7%)
Query: 24 IFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNF 83
I++LI+ V+ + L +S+++ + R+ ++ + + R
Sbjct: 9 IYALIFVGVLVLVEGIYLTVFGRSISLNNRVNRRLEMLDKSGNREEVMEKLRKEMQQHLK 68
Query: 84 VKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLE 143
++L L AIL D +++ + +L++ ++ L ++ G +
Sbjct: 69 ARRLPLYAILSD------------KAQKAAIAFTPRQLILLMVGL--SVLAFIGLSVATD 114
Query: 144 YPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQA 203
+R A + IG G WIS KR + ++ PDA++L++ + G A
Sbjct: 115 TAAPVRAIASVGIGVGGIFT---WISMKASKRMALLEEQLPDAIELMVRSLRVGHPFSSA 171
Query: 204 LRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDR 263
+ VA ++G PL+ E + E ++ + A + R M +R A+ +
Sbjct: 172 IGIVATEVGD---PLATEFGIIADEAAYGRDMGEALKEMAERLDMQDLRFLAVAVTIQQQ 228
Query: 264 YGTSIGDSLRVLVSETRSERLMEAEKKAASLGPK 297
G ++ + L L R+ + KA + K
Sbjct: 229 SGGNLAEILAGLAQVIRARFRLFRRVKAITAEAK 262
>gi|255263835|ref|ZP_05343177.1| type II secretion system protein [Thalassiobium sp. R2A62]
gi|255106170|gb|EET48844.1| type II secretion system protein [Thalassiobium sp. R2A62]
Length = 322
Score = 98.8 bits (245), Expect = 1e-18, Method: Composition-based stats.
Identities = 54/308 (17%), Positives = 125/308 (40%), Gaps = 29/308 (9%)
Query: 8 LFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDS 67
+ + E + +++ +++ + + G KS+++ + R+ ++ L+K
Sbjct: 1 MTISAEPLIYGLIFLAVLAIVEGIYLTVFG--------KSISLNNRVNRRLEM--LEKGG 50
Query: 68 ASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIF 127
++ + K + + + L AA +++ + +L++ I
Sbjct: 51 GREQVLEQLRKEMSQHMNSKGVPIYS--------LLAA--KAQKANIAFSPPQLIM--IM 98
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
L ++ +R G +L+G G +W++N +KR + I+ PDA+
Sbjct: 99 FGLSVVAFILLTVGTGASAPIRAGVSLLMGVGGVF---IWVNNKAKKRLALIEEQLPDAV 155
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQ 247
+L++ + G A+ VA+++ PL EM + E ++ + A + R +
Sbjct: 156 ELMVRSLRVGHPFTSAVAIVAKEVPD---PLGSEMGVISDEAAYGRDVGEALKAMAERLE 212
Query: 248 MDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFL 307
M +R A+ + G ++ + L L R+ + KA + K + M +
Sbjct: 213 MQDMRFLAVAVTIQQQAGGNLAEILHGLAQVIRARFKLFRRVKAITAEAKWSG-MFLSLF 271
Query: 308 PVLILVII 315
P+ LV+I
Sbjct: 272 PLGALVMI 279
>gi|317123666|ref|YP_004097778.1| type II secretion system F domain [Intrasporangium calvum DSM
43043]
gi|315587754|gb|ADU47051.1| Type II secretion system F domain [Intrasporangium calvum DSM
43043]
Length = 652
Score = 98.4 bits (244), Expect = 1e-18, Method: Composition-based stats.
Identities = 58/303 (19%), Positives = 114/303 (37%), Gaps = 23/303 (7%)
Query: 13 ELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRL 72
A T V+I L ++ PS E+R+ S+ R + + SA
Sbjct: 331 PWIAAGTIGVAILLLAIGILTPSFA-TRREQRLASLESYMGQTRVASRSEGKHHSAP--- 386
Query: 73 RTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGI 132
++ L NF ++ +K + + A V+R V + + +G+
Sbjct: 387 ---IAEQLVNFGER-AMKGRSSTARTMELINRADLPLR--PGEWWVLRSVAVLSGVAIGM 440
Query: 133 IWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLI 192
+ G + L +G+ P+ + L +R ++ +R P +L L+
Sbjct: 441 LLFGGS----------ALLGAALGFMLGYFLPAFVLRFLAARRAAAFERLLPQSLMLVST 490
Query: 193 CVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVR 252
+ SG + QAL +A+D PL++E +AE + A E +R +R
Sbjct: 491 SLRSGFGLPQALDSIAKDAPD---PLAKEFSRGLAETRIGTDIADALERMADRMGSRSMR 547
Query: 253 NATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLIL 312
A A+ G ++ ++L R + + +A S +L+ ++I L
Sbjct: 548 MAVMAIRIQREVGGNLAETLETTARTLRERESLHRQVRALSAEGRLSAYILIALPIGLFF 607
Query: 313 VII 315
++
Sbjct: 608 YMM 610
>gi|170740617|ref|YP_001769272.1| type II secretion system protein [Methylobacterium sp. 4-46]
gi|168194891|gb|ACA16838.1| type II secretion system protein [Methylobacterium sp. 4-46]
Length = 322
Score = 98.4 bits (244), Expect = 1e-18, Method: Composition-based stats.
Identities = 55/283 (19%), Positives = 110/283 (38%), Gaps = 30/283 (10%)
Query: 14 LAVAITTAVSIFSLIYAVVIPSLGSG-ELEKRMKSVAVEREILRKQQITSLQKDSASSRL 72
L VA AV+ L YAVV+P L S KR +++A R + + Q + ++ A S
Sbjct: 7 LIVAGLLAVTASCLAYAVVVPLLPSEARAAKRQQAIAGRRSPMERVQAVNRREQVAKS-- 64
Query: 73 RTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGI 132
+K+L K ++ ++ AG + + V V+ + L++G+
Sbjct: 65 -----------LKELEAKERKARPSLELRITQAGLS--ITKSQFYVASGVLAGVSLVMGL 111
Query: 133 IWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLI 192
+ + A+ L G P + L ++R + P+A+D+++
Sbjct: 112 VM-----------SGSPLTAIALAFAAGLGLPQWLLGYLRKRRIARFVLELPNAMDVIVR 160
Query: 193 CVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVR 252
++SG+ + LR +A + P+ E + + + A + R +
Sbjct: 161 GIKSGLPVGDCLRIIARE---APEPVRTEFRALVESQAVGVSLSEAATKLFERMPVSEAN 217
Query: 253 NATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLG 295
+ + G ++ ++L L R R M + A S+
Sbjct: 218 FFAIVIGIQAKSGGNLSEALGNLSRVLRDRRRMADKVSAMSME 260
>gi|146276357|ref|YP_001166516.1| type II secretion system protein [Rhodobacter sphaeroides ATCC
17025]
gi|145554598|gb|ABP69211.1| type II secretion system protein [Rhodobacter sphaeroides ATCC
17025]
Length = 322
Score = 98.4 bits (244), Expect = 1e-18, Method: Composition-based stats.
Identities = 56/301 (18%), Positives = 118/301 (39%), Gaps = 29/301 (9%)
Query: 15 AVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRT 74
+ I V++ L+ + + G KS+++ + R+ + L+K+ ++
Sbjct: 8 IIYILIFVAVLLLVEGIYLTVFG--------KSISLNSRVSRR--LALLEKNQNREQVLE 57
Query: 75 RDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIW 134
+ K + + + V + K NI + +V I+ L+ + +
Sbjct: 58 QLRKEMSQHMNARGIPLYAVLASKAQK-----------ANIAFSPKALVAIMALLSAVAY 106
Query: 135 IFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICV 194
+ G +RV I +G VW++N +KR + I+ PDA++L++ +
Sbjct: 107 M-GLTIGTAASPAVRVAVAIFMGVGAVY---VWVNNKAKKRMALIEEQLPDAVELMVRSL 162
Query: 195 ESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNA 254
G A++ VA+++ PL E + E ++ + F R +R
Sbjct: 163 RVGHPFSSAIQIVAKEVPD---PLGTEFGVIADEAAYGRDVAECIRAFAERMDSQDLRFL 219
Query: 255 TQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVI 314
A+ + G ++ + L L RS + KA + K + + P++ LV+
Sbjct: 220 AVAVNIQQQSGGNLAEILEGLAKVIRSRFKLFRRVKAITAEAKWSG-TFLSAFPIVALVM 278
Query: 315 I 315
I
Sbjct: 279 I 279
>gi|310640814|ref|YP_003945572.1| type ii secretion system f domain protein [Paenibacillus polymyxa
SC2]
gi|309245764|gb|ADO55331.1| Type II secretion system F domain protein [Paenibacillus polymyxa
SC2]
Length = 292
Score = 98.4 bits (244), Expect = 1e-18, Method: Composition-based stats.
Identities = 41/157 (26%), Positives = 70/157 (44%), Gaps = 3/157 (1%)
Query: 168 ISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRR-VAEDIGGQSVPLSEEMLLTI 226
+ VQKR I P+ L +++ V +G ++ +AL V PL E+L T+
Sbjct: 135 LHGKVQKRDQQILMELPELLSKMMLLVGAGETVQRALLHCVERKGADTVHPLYRELLQTV 194
Query: 227 AELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTS-IGDSLRVLVSETRSERLM 285
E + Q AFE+ R + V T ++ + R G S +LR L S+R
Sbjct: 195 GEWESGYSFQQAFEHLSKRCGIQEVTIFTTTVLLNMRRGGSDFVMALRELSQTLWSKRTS 254
Query: 286 EAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
+ + KL PM + L +I+++ PA++ +
Sbjct: 255 ISRTRGEQASSKLVFPMAL-ILLTVIVLVGAPALMMM 290
>gi|297618077|ref|YP_003703236.1| type II secretion system F domain protein [Syntrophothermus
lipocalidus DSM 12680]
gi|297145914|gb|ADI02671.1| Type II secretion system F domain protein [Syntrophothermus
lipocalidus DSM 12680]
Length = 329
Score = 98.4 bits (244), Expect = 1e-18, Method: Composition-based stats.
Identities = 38/283 (13%), Positives = 95/283 (33%), Gaps = 23/283 (8%)
Query: 21 AVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSL 80
+ + + + +L L R V E + +K+ ++ L+ +
Sbjct: 16 GFVLVMVFFTAMFFTLALVRLLDRKSEVKDRLERYIAGNAENEKKEKSTPALKAGFERMA 75
Query: 81 RNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDK 140
F + E I +L AG + + + +++ + + +
Sbjct: 76 SVFASR------SYTEKIQVELLQAGLPLKG--EEFITLWVLLATAIPAMTWLVTRNWPL 127
Query: 141 LLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISI 200
+ G P ++ + +R + + DAL ++ + +G
Sbjct: 128 AILVLLLAVFG------------PRFYLQHKKGERLKTFNQQLGDALVIMANALRAGFGF 175
Query: 201 DQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQ 260
QA+ V ++ P+S E T+ E+ + + N R + D + A++
Sbjct: 176 QQAMETVRREL---PPPISTEFEWTLREIQLGSTTEESLLNLCERVKSDDLDMVVTAVLI 232
Query: 261 SDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMI 303
+ G ++ L + R ++ E + + +L+ +I
Sbjct: 233 QRQVGGNLAQILDNISRTIRDRTRIKGEIRTLTAQGRLSGIII 275
>gi|154505643|ref|ZP_02042381.1| hypothetical protein RUMGNA_03182 [Ruminococcus gnavus ATCC 29149]
gi|153794082|gb|EDN76502.1| hypothetical protein RUMGNA_03182 [Ruminococcus gnavus ATCC 29149]
Length = 407
Score = 98.0 bits (243), Expect = 2e-18, Method: Composition-based stats.
Identities = 38/179 (21%), Positives = 76/179 (42%), Gaps = 11/179 (6%)
Query: 154 ILIGYVGFCAPSVWIS-------NLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRR 206
+ I +G A ++ + + R+ + +P+ + + + +G+ +A +
Sbjct: 228 VGIFVLGIVAAALMLVLEKQNEIQKKKARRHQLAMDYPEFISTFTLYLGAGMPARRAWFQ 287
Query: 207 VAEDIGGQ--SVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRY 264
+A Q + + EEM+ T+ E+ +E+F R + R L Q+ R
Sbjct: 288 IASVYRQQENTRYVYEEMVYTMREMQRGTPESECYEHFGMRCGLPVYRKFAVMLSQNLRK 347
Query: 265 GT-SIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
GT + + L+ + ER A K +L PM L V++++I+ PA L+I
Sbjct: 348 GTKGLAELLQREAAGAFEERKAAARKLGEETSTRLLGPM-FLMLGVVLMIIVVPAFLTI 405
>gi|85705156|ref|ZP_01036256.1| type II/IV secretion system protein, TadC subfamily protein
[Roseovarius sp. 217]
gi|85670478|gb|EAQ25339.1| type II/IV secretion system protein, TadC subfamily protein
[Roseovarius sp. 217]
Length = 322
Score = 98.0 bits (243), Expect = 2e-18, Method: Composition-based stats.
Identities = 57/291 (19%), Positives = 119/291 (40%), Gaps = 30/291 (10%)
Query: 24 IFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQI--TSLQKDSASSRLRTRDSKSLR 81
I++LI+ V+ + L +S+++ + R+ ++ S ++ +LR + L+
Sbjct: 9 IYALIFVGVLVLVEGIYLTVFGRSISLNNRVNRRLEMLDKSGNREEVMEKLRKEMQQHLK 68
Query: 82 NFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKL 141
++L L AIL D +++ + +L++ + + L ++ G
Sbjct: 69 --ARRLPLYAILSD------------KAQKAAIAFTPKQLIL--LMVALSVLAFIGLSVG 112
Query: 142 LEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISID 201
E +R A + IG G WIS KR + ++ PDA++L++ + G
Sbjct: 113 TETAAPVRAIASVGIGVGGIFT---WISMKASKRMALLEEQLPDAIELMVRSLRVGHPFS 169
Query: 202 QALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQS 261
A+ VA ++G PL+ E + E ++ + A + R M +R A+
Sbjct: 170 SAIGIVATEVGD---PLATEFGIIADEAAYGRDMGEALKEMAERLDMQDLRFLAVAVTIQ 226
Query: 262 DRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLT------VPMIIFF 306
+ G ++ + L L R+ + KA + K + P++
Sbjct: 227 QQSGGNLAEILAGLAKVIRARFRLFRRVKAITAEAKWSGKFLSGFPIMALI 277
>gi|163814842|ref|ZP_02206230.1| hypothetical protein COPEUT_00992 [Coprococcus eutactus ATCC 27759]
gi|158449781|gb|EDP26776.1| hypothetical protein COPEUT_00992 [Coprococcus eutactus ATCC 27759]
Length = 434
Score = 98.0 bits (243), Expect = 2e-18, Method: Composition-based stats.
Identities = 36/176 (20%), Positives = 79/176 (44%), Gaps = 8/176 (4%)
Query: 150 VGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAE 209
+ I+ + +S ++R+ + +P+ +D L++ + +G++I + R+ +
Sbjct: 264 IFLGIISAVCIWMGARAKLSKQEKERKQQLMIDYPELVDRLILYLGAGVTIRGSFVRMVQ 323
Query: 210 DIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIG 269
+ L +E+ T+ E+ A+ N +R + L Q+ GT
Sbjct: 324 N--DDESALMKELRYTLNEIQAGIPEGEAYYNMGHRINIPVYMKLMSMLSQNVSKGTK-- 379
Query: 270 DSLRVLVSETR---SERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
D + ++ E + R A KK G +L PMI+ L V++++++ PA++S
Sbjct: 380 DIMIMMAGEEQAALQTRKELARKKGEEAGTRLLFPMIV-LLGVVMVIVVLPAVMSF 434
>gi|83312844|ref|YP_423108.1| Flp pilus assembly protein TadB [Magnetospirillum magneticum AMB-1]
gi|82947685|dbj|BAE52549.1| Flp pilus assembly protein TadB [Magnetospirillum magneticum AMB-1]
Length = 330
Score = 98.0 bits (243), Expect = 2e-18, Method: Composition-based stats.
Identities = 50/290 (17%), Positives = 112/290 (38%), Gaps = 29/290 (10%)
Query: 38 SGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDEN 97
L++R+ +VA + R+ + Q+ S +RL+ + R+F +
Sbjct: 38 RARLKRRLAAVAGGQTSSRRTAVRGPQRKSVQARLKAVEGSRQRHFGWRF---------- 87
Query: 98 IVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIG 157
+L AG+R E + L V+ ++ L +G E V + +
Sbjct: 88 -REQLMQAGWRLE--VWQYLAGCAVLALLVLGIG-----------EASGLPLVWSGLAAL 133
Query: 158 YVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVP 217
+G P + + KR + + DALD+++ + SG+ + + + + ++ P
Sbjct: 134 CLGLGIPKLVLGMAAGKRLKAFASQFADALDVVVRGIRSGLPLGECIAIIGREMPD---P 190
Query: 218 LSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVS 277
+ E A R M +R L + G ++ ++L L
Sbjct: 191 VGAEFRQITEGTRIGLTLHEALGRAVERMPMAEMRYFAIVLAIQQQTGGNLAETLAKLSD 250
Query: 278 ETRSERLMEAEKKAASLGPKLTVPMI--IFFLPVLILVIIGPAILSIIDT 325
R+ + M + +A + + + +I + + V +L ++ P ++++ T
Sbjct: 251 VLRARKRMRDKVQAYAAEARASAAIIGSLPLVVVGMLGLVAPQYIALLFT 300
>gi|319791196|ref|YP_004152836.1| type II secretion system f domain [Variovorax paradoxus EPS]
gi|315593659|gb|ADU34725.1| Type II secretion system F domain [Variovorax paradoxus EPS]
Length = 285
Score = 98.0 bits (243), Expect = 2e-18, Method: Composition-based stats.
Identities = 35/190 (18%), Positives = 80/190 (42%), Gaps = 4/190 (2%)
Query: 126 IFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPD 185
+ G ++ + + + ++ V + P+ W + +KR+ I+ PD
Sbjct: 58 VAFASGHAFLVALCGAVGWLISGNLIGGVVAAVVLYLLPARWFAWQRKKRRQQIESELPD 117
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
AL + + +G ++ A++ + D Q PL +E L + E + A + R
Sbjct: 118 ALLFIASALRAGSALSVAIQVLVRD---QVGPLGQEFGLVLKEQRLGVSFDDAIQKMSQR 174
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
+ AL S G ++ + L+VL R + ++E KA + ++ +++
Sbjct: 175 LGIPDFVLVVVALRVSKEVGGNLSEPLQVLAETLRRKAILEGRIKALTAQGRIQG-LVMT 233
Query: 306 FLPVLILVII 315
P+L++ ++
Sbjct: 234 LFPLLLMGVL 243
>gi|284989775|ref|YP_003408329.1| Type II secretion system F domain-containing protein
[Geodermatophilus obscurus DSM 43160]
gi|284063020|gb|ADB73958.1| Type II secretion system F domain protein [Geodermatophilus
obscurus DSM 43160]
Length = 313
Score = 98.0 bits (243), Expect = 2e-18, Method: Composition-based stats.
Identities = 62/319 (19%), Positives = 120/319 (37%), Gaps = 12/319 (3%)
Query: 9 FDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKD-- 66
+AT + + A + L+ P S L R+ + + T+ +
Sbjct: 1 MNATLAGMLLGLAAAAGVLLVVTFAPPFRSVRLVDRLAPYVHDTPPPSRLLGTATEAGLL 60
Query: 67 SASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPII 126
+A RL F+ ++ + + +L A G S+ + V ++V +
Sbjct: 61 TAVRRLFGPAVADGARFIDRV----LGGRTAVRRRLDALG--SDAGVEDFRVEQVVWGGL 114
Query: 127 FLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCA-PSVWISNLVQKRQSSIKRAWPD 185
L+ + L L V + + G VG W++ VQ+R+ + +P
Sbjct: 115 GLLGAALLATAGSLLAGDVNVLSVALLCVAGLVGGVLGRDWWLTQQVQRREELLLTEFPV 174
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
+LL + V +G S A+ RV GG L+ E+ + A + +R
Sbjct: 175 VAELLALAVTAGESPTAAIARVTRLSGG---ELARELGAALGRARAGVPLADALQQVADR 231
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
T +D + L+ + GT + + LR ++ R + + VP++
Sbjct: 232 TSLDPLARFVDGLLVALERGTPLAEVLRAQAADVREAGKRRLLEAGGRKEIAMMVPVVFL 291
Query: 306 FLPVLILVIIGPAILSIID 324
LPV +L + P ++SI+
Sbjct: 292 VLPVTVLFALYPGLISIVS 310
>gi|327543263|gb|EGF29696.1| Flp pilus assembly protein TadB [Rhodopirellula baltica WH47]
Length = 321
Score = 97.6 bits (242), Expect = 2e-18, Method: Composition-based stats.
Identities = 39/195 (20%), Positives = 80/195 (41%), Gaps = 5/195 (2%)
Query: 121 LVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIK 180
L V +I G + G + P + +G ++ +VG AP ++ ++R
Sbjct: 90 LTVTKFAMICGGCFAAGMVLCVVTPIPILLGPIVGATFVG--APVFYVMFKRKRRLKRFG 147
Query: 181 RAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFE 240
P+AL+LL + +G S++ V +++ PL+ E E F + E
Sbjct: 148 EQIPEALELLGRSLRAGHSLNAGFGLVGDEMEA---PLATEFRRCFEEQKFGIPLDESIE 204
Query: 241 NFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV 300
+ R +R A+I + G + + L + R + +A + +++
Sbjct: 205 DMAERVPNMDLRFFATAVILQRQTGGDLSEILDKIGHLVRERLQILGTIQALTGEGRMSG 264
Query: 301 PMIIFFLPVLILVII 315
+++ PVL LV++
Sbjct: 265 AVLLALPPVLFLVML 279
>gi|225376647|ref|ZP_03753868.1| hypothetical protein ROSEINA2194_02289 [Roseburia inulinivorans DSM
16841]
gi|225211530|gb|EEG93884.1| hypothetical protein ROSEINA2194_02289 [Roseburia inulinivorans DSM
16841]
Length = 344
Score = 97.6 bits (242), Expect = 2e-18, Method: Composition-based stats.
Identities = 53/244 (21%), Positives = 99/244 (40%), Gaps = 13/244 (5%)
Query: 77 SKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIF 136
+ + VKKLN K + E Y L L+ +++ + L GI
Sbjct: 108 WDATNDLVKKLNQKCMQFKEKKEA------IHYTYYLLATLIGNIILGMAGLFAGIAIGL 161
Query: 137 GYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVES 196
+ + F + + ++ G +G+ P ++ +V KRQ I+R +P + + + +
Sbjct: 162 AMN-MGMRSFLIGIVIFVIFGLLGYI-PYDSVNAVVSKRQEDIEREFPQVISKMTLLTVA 219
Query: 197 GISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQ 256
G+ + QA R + G L +EM + + + A+ F +R
Sbjct: 220 GMEVSQAWRLASASGEGT---LYKEMKRVLVDFDNNVSPVEAYSKFISRCSNTYTTKLAT 276
Query: 257 ALIQSDRYGTS-IGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVII 315
A+IQ+ G S I R L E+ E A + + KL +P ++ +I++II
Sbjct: 277 AIIQNISKGNSEIVTLFRQLNDESWLEHKHNARRMGEKIQSKLLLPTML-MFGGIIILII 335
Query: 316 GPAI 319
P +
Sbjct: 336 VPVM 339
>gi|303248307|ref|ZP_07334569.1| Type II secretion system F domain protein [Desulfovibrio
fructosovorans JJ]
gi|302490332|gb|EFL50244.1| Type II secretion system F domain protein [Desulfovibrio
fructosovorans JJ]
Length = 326
Score = 97.6 bits (242), Expect = 2e-18, Method: Composition-based stats.
Identities = 36/206 (17%), Positives = 83/206 (40%), Gaps = 7/206 (3%)
Query: 123 VPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRA 182
P+ +L + + + + + A + +G P WI+ KR + +R
Sbjct: 95 APLGVFVLLSLVLAVTGSMAASIYTQNLLARLAVGVGLGFLPFKWIAMRKAKRMTEFERQ 154
Query: 183 WPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENF 242
P+ALDL+ + +G + + V + P+S E T+ E++F VA +N
Sbjct: 155 LPEALDLVGRALRAGHTFTSGMGMVVSEFAE---PISSEFRTTLEEINFGMGVTVALDNL 211
Query: 243 YNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPM 302
+R + ++ + G ++ + + + S R ++ + S ++
Sbjct: 212 MDRVDCPDLNFFVISVKIQNETGGNLAEIIGNIASLIRERLKLKGRIRVLSAEGRM-AAW 270
Query: 303 IIFFLPVLI---LVIIGPAILSIIDT 325
++ LP + + ++ P L ++ T
Sbjct: 271 VLCLLPFFVCGAVQVLNPGYLGLLFT 296
>gi|149915638|ref|ZP_01904164.1| type II secretion system protein, putative [Roseobacter sp.
AzwK-3b]
gi|149810530|gb|EDM70373.1| type II secretion system protein, putative [Roseobacter sp.
AzwK-3b]
Length = 322
Score = 97.6 bits (242), Expect = 2e-18, Method: Composition-based stats.
Identities = 45/288 (15%), Positives = 102/288 (35%), Gaps = 30/288 (10%)
Query: 11 ATELAVAITTAVSIFSLIYAVVIPSLGSG-ELEKRMKSVAVEREILRKQQITSLQKDSAS 69
+ E + + + L+ + + G L R+ +++ L K
Sbjct: 4 SAEPIIYGLIFIGVLVLVEGIYLTVFGRSISLNNRV-----------NRRLEMLDKTGNR 52
Query: 70 SRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLI 129
++ + K ++ +K N+ + K + +L++ +
Sbjct: 53 EQVMEKLRKEMQQHLKARNIPIYAILSEKAQK----------AAIAFTPQQLIM--LMAG 100
Query: 130 LGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDL 189
+ ++ G +R I +G G WI+ KR + ++ PDA++L
Sbjct: 101 VSVLAFLGLTIGTATSVPVRAVVSIAMGVGGVFT---WITIKANKRMAMLEEQLPDAIEL 157
Query: 190 LLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMD 249
++ + G A+ VA ++ PL+ E + E ++ + A ++ R M
Sbjct: 158 MVRSLRVGHPFTSAISIVASEMAD---PLATEFGIIADEAAYGRDIGEALKDMAERLDMQ 214
Query: 250 CVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPK 297
+R A+ + G ++ + L L R+ + KA + K
Sbjct: 215 DLRFLAVAVTIQQQSGGNLAEILDGLAKVIRARFRLFRRVKAITAEAK 262
>gi|94309585|ref|YP_582795.1| type II secretion system protein [Cupriavidus metallidurans CH34]
gi|93353437|gb|ABF07526.1| flp pilus assembly protein TadB [Cupriavidus metallidurans CH34]
Length = 325
Score = 97.6 bits (242), Expect = 2e-18, Method: Composition-based stats.
Identities = 53/318 (16%), Positives = 123/318 (38%), Gaps = 38/318 (11%)
Query: 15 AVAITTAVSIFSLIYAVVIPSL-----GSGELEKRMKSVAVEREILRKQQITSLQKDSAS 69
A I V++ + A+ + + +E R+++++ + ++++ L+K S
Sbjct: 7 AFGILLFVAVVLSVEAIYLWWNNAHGPAAKRIEARLRALSAG-GHVSAERLSILKKRLLS 65
Query: 70 SRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLI 129
R + + L+ L +G S +S+ L +
Sbjct: 66 DSPRMQRWLMSVPRIGALD-----------RWLEQSG--STWSVAQLFG--------YCG 104
Query: 130 LGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDL 189
L ++ L+ P + +G + + + P + + L KR ++ PDA+D+
Sbjct: 105 LVVLCAVALIPLVPVPLPIILGCMAFV----WLLPFLHVMRLRTKRLKQMEVQLPDAVDM 160
Query: 190 LLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMD 249
+ + +G S AL V ++I PL E T E+++ A N R +
Sbjct: 161 ISRALRAGHSFAGALGMVGQEIKA---PLGPEFRTTFEEINYGVALDEAMTNLAMRVPVG 217
Query: 250 CVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP- 308
+R A++ G ++ + L + + R + + + S +L+ I+ LP
Sbjct: 218 DLRYFVIAVLIQRESGGNLAEILDTIGTMVRERLKLFDKIRVLSAEGRLSA-WILGLLPF 276
Query: 309 --VLILVIIGPAILSIID 324
+++++ P + ++
Sbjct: 277 GTAGLIMVVNPGFMRVLW 294
>gi|126729094|ref|ZP_01744908.1| type II/IV secretion system protein, TadC subfamily [Sagittula
stellata E-37]
gi|126710084|gb|EBA09136.1| type II/IV secretion system protein, TadC subfamily [Sagittula
stellata E-37]
Length = 321
Score = 97.3 bits (241), Expect = 3e-18, Method: Composition-based stats.
Identities = 36/191 (18%), Positives = 75/191 (39%), Gaps = 12/191 (6%)
Query: 123 VPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRA 182
+ +I ++ G E +RV +G G +W+ +KR S I+
Sbjct: 93 LMMIMAGASVVAFVGLSIGTETGLAIRVVLSAGMGIGGVY---MWVGTKAKKRLSMIEEQ 149
Query: 183 WPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENF 242
PDA++L++ + G A+ V+++I PL+ E + E ++ + A ++
Sbjct: 150 LPDAVELMVRSLRVGHPFTSAITIVSKEIKD---PLATEFGIIADESAYGRDIGEALKHM 206
Query: 243 YNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLT--- 299
R M +R A+ + G ++ + L L R+ + KA + + +
Sbjct: 207 AERLDMQDLRFLAVAVAIQQQAGGNLAEILEGLAKVIRARFRLFRRVKAITAEAQWSGKF 266
Query: 300 ---VPMIIFFL 307
P++
Sbjct: 267 LSGFPVMALIF 277
>gi|194288829|ref|YP_002004736.1| tad secretion system, secretion accessory protein [Cupriavidus
taiwanensis LMG 19424]
gi|193222664|emb|CAQ68667.1| Tad secretion system, secretion accessory protein [Cupriavidus
taiwanensis LMG 19424]
Length = 325
Score = 97.3 bits (241), Expect = 3e-18, Method: Composition-based stats.
Identities = 53/318 (16%), Positives = 122/318 (38%), Gaps = 38/318 (11%)
Query: 15 AVAITTAVSIFSLIYAVVIPSL-----GSGELEKRMKSVAVEREILRKQQITSLQKDSAS 69
A I V++ + + + + +E R+++++ + +Q++ L+K +
Sbjct: 7 AFGILLFVAVVLCVEGIYLWWNNAHGPAAKRIEARLRALSAG-GHVGAEQLSILKKRLLA 65
Query: 70 SRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLI 129
R + + L+ L +G S +S+ L +
Sbjct: 66 DSPRLQQWLMRVPRIGALD-----------RWLEQSG--STWSVAQLFG--------YCA 104
Query: 130 LGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDL 189
L ++ LL P L + +L P + + +L KR ++ PDA+D+
Sbjct: 105 LVVLCTVALIPLLPLPASLVMLGAVLAA----MLPVLHVVHLRAKRLKQLEAQLPDAVDM 160
Query: 190 LLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMD 249
+ + +G S AL V +++ P+ E T E+++ A N R +
Sbjct: 161 ISRALRAGHSFSGALSMVGQEMKA---PIGPEFRTTFEEINYGVALDEAMTNLAMRVPVA 217
Query: 250 CVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP- 308
+R A++ G ++ + L + + R + + + S KL+ ++ LP
Sbjct: 218 DLRYFVIAVLIQRESGGNLAEILDTIGTMVRERLKLFDKIRVLSAEGKLSA-WVLGLLPF 276
Query: 309 --VLILVIIGPAILSIID 324
++++I P ++++
Sbjct: 277 GTAGMILVINPGFMNVLW 294
>gi|85859133|ref|YP_461335.1| flp pilus assembly protein [Syntrophus aciditrophicus SB]
gi|85722224|gb|ABC77167.1| flp pilus assembly protein [Syntrophus aciditrophicus SB]
Length = 327
Score = 97.3 bits (241), Expect = 3e-18, Method: Composition-based stats.
Identities = 50/316 (15%), Positives = 117/316 (37%), Gaps = 27/316 (8%)
Query: 14 LAVAITTAVSIFSLIYA-VVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRL 72
+ +S+ +++ V + S + +KR+ ++ + +Q L D
Sbjct: 5 FLPFVIIFISVVAVVEGFVFLISWRTNPEKKRI----NQQLKMLSRQKEQLAYDDFDITR 60
Query: 73 RTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGI 132
+TR+ S+ + L L+ + + A R+ Y++++ IL
Sbjct: 61 KTRELSSVPWLNELLQKIPRLLPTD--RLIEQA--RAPYTMSVY------------ILAA 104
Query: 133 IWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLI 192
+ +F L+ + + G P +++ R PDALDL+
Sbjct: 105 LLLFFVGTLIFHALTKTFLVAVPAGLAMSYLPFLFLIMKKNSRMKKFDAQLPDALDLMAR 164
Query: 193 CVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQ-MDCV 251
+++G + ++ VA++ P+ E + E +F + A N NR +
Sbjct: 165 ALKAGHAFPGGIQMVAKEFDD---PIGIEFAKVVEETNFGVGVEEALRNLANRFDSSSDL 221
Query: 252 RNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFF--LPV 309
+ A++ G ++ + L + R + + S +L+ +++
Sbjct: 222 KFFAIAVMIQRESGGNLAEILESIARIIRERFKLMGTIRTLSAEGRLSAIILVAIPFFVA 281
Query: 310 LILVIIGPAILSIIDT 325
L I+ P ++++ T
Sbjct: 282 FALSIMNPQYITVLAT 297
>gi|170750193|ref|YP_001756453.1| type II secretion system protein [Methylobacterium radiotolerans
JCM 2831]
gi|170656715|gb|ACB25770.1| type II secretion system protein [Methylobacterium radiotolerans
JCM 2831]
Length = 325
Score = 97.3 bits (241), Expect = 3e-18, Method: Composition-based stats.
Identities = 49/296 (16%), Positives = 105/296 (35%), Gaps = 30/296 (10%)
Query: 33 IPSLGSGELE-KRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKA 91
+P LG KR+KS++V + + R + +K+L K
Sbjct: 27 LPLLGGERRANKRLKSISV--------SASGAATRGVAVNRREQVAKTLSEIEAK---AK 75
Query: 92 ILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVG 151
++ KL AG ++ + + ++F G++ D L G
Sbjct: 76 GASKASVELKLARAGL--GWTKQTFYGMSALSGVVF---GLLLFVITDNALAALGAAFAG 130
Query: 152 AVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDI 211
P+ + +L KR + + P+A+D+++ + +GI + R V+ +
Sbjct: 131 GF--------GLPAYLLRHLRLKRIAKFNKELPNAVDVVVRGIRTGIPVGDCFRMVSREA 182
Query: 212 GGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDS 271
P+ E + + + A + R V + + G ++ ++
Sbjct: 183 EE---PVRSEFRTVVETQAMGLSLGEACTRLFERVPTAEVNFFAIVINIQQQSGGNLSEA 239
Query: 272 LRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVII--GPAILSIIDT 325
L L + R M + +A S+ K + +I + + P +S++ T
Sbjct: 240 LNNLSTVLRDRAKMRGKVQAMSMEAKASASIIACLPFAVAGITALTSPDYISLLWT 295
>gi|308068034|ref|YP_003869639.1| hypothetical protein PPE_01259 [Paenibacillus polymyxa E681]
gi|305857313|gb|ADM69101.1| Conserved hypothetical protein [Paenibacillus polymyxa E681]
Length = 290
Score = 97.3 bits (241), Expect = 3e-18, Method: Composition-based stats.
Identities = 39/157 (24%), Positives = 69/157 (43%), Gaps = 3/157 (1%)
Query: 168 ISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRR-VAEDIGGQSVPLSEEMLLTI 226
+ VQKR I P+ L +++ V +G ++ +AL V PL E+ T+
Sbjct: 133 LHGKVQKRDQQILMELPELLSKMMLLVGAGETVQRALLHCVERKGADTEHPLYRELRQTV 192
Query: 227 AELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTS-IGDSLRVLVSETRSERLM 285
AE + Q AFE+ R + + T ++ + R G S +LR L +R
Sbjct: 193 AEWESGFSFQQAFEHLSKRCGIQEMTVFTTTVLLNMRRGGSDFVMALRELSQTLWGKRTS 252
Query: 286 EAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
+ + KL PM + L +I+++ PA++ +
Sbjct: 253 ISRTRGEQASSKLVFPMAL-ILLTVIVLVGAPALMMM 288
>gi|159043674|ref|YP_001532468.1| type II secretion system protein [Dinoroseobacter shibae DFL 12]
gi|157911434|gb|ABV92867.1| type II secretion system protein [Dinoroseobacter shibae DFL 12]
Length = 322
Score = 97.3 bits (241), Expect = 3e-18, Method: Composition-based stats.
Identities = 40/193 (20%), Positives = 80/193 (41%), Gaps = 7/193 (3%)
Query: 121 LVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIK 180
+ +I ++L + G + +RV A + IG +W++ ++R + I+
Sbjct: 92 AALIMIMVLLMGVSFVGLTLGTQASLAVRVVASVAIGIGAVY---MWVNKKAKQRLAMIE 148
Query: 181 RAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFE 240
PDA++L++ + G A+ VA+++ PL E + E ++ + A +
Sbjct: 149 EQLPDAVELMVRSLRVGHPFSSAINIVAKEVAD---PLGTEFGMIADEAAYGRDVTEALK 205
Query: 241 NFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV 300
R M +R A+ + G ++ + L L R+ + KA + K +
Sbjct: 206 ELAERMDMQDLRFLAVAVSIQSQSGGNLAEILDGLAKVIRARFKLFRRVKAITAEAKWSG 265
Query: 301 PMIIFFLPVLILV 313
M + P L LV
Sbjct: 266 -MFLSGFPFLALV 277
>gi|89068022|ref|ZP_01155439.1| type II/IV secretion system protein, TadC subfamily protein
[Oceanicola granulosus HTCC2516]
gi|89046261|gb|EAR52318.1| type II/IV secretion system protein, TadC subfamily protein
[Oceanicola granulosus HTCC2516]
Length = 322
Score = 97.3 bits (241), Expect = 3e-18, Method: Composition-based stats.
Identities = 41/193 (21%), Positives = 82/193 (42%), Gaps = 7/193 (3%)
Query: 123 VPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRA 182
+ ++ +L + G E +R+ + +G G +W+++ +KR S I+
Sbjct: 94 LIMVMGLLSAVAFAGLTLQTEAGLPVRLAVAVAMGVSGVF---MWVNSKAKKRMSMIEEQ 150
Query: 183 WPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENF 242
PDA++L++ + G A+ VA+++ PL EM + E ++ + + +
Sbjct: 151 LPDAVELMVRSLRVGHPFSSAINIVAKEVAD---PLGTEMGVIADEAAYGRDMGESLKAM 207
Query: 243 YNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPM 302
R M +R A+ G ++ + L L R+ + KA + K + M
Sbjct: 208 AERMDMQDLRFLAVAVTIQQTSGGNLAEILDGLAKVIRARFRLFRRVKAITAEAKWSG-M 266
Query: 303 IIFFLPVLILVII 315
+ P+L LV I
Sbjct: 267 FLSGFPLLALVAI 279
>gi|225181995|ref|ZP_03735427.1| type II secretion system protein [Dethiobacter alkaliphilus AHT 1]
gi|225167280|gb|EEG76099.1| type II secretion system protein [Dethiobacter alkaliphilus AHT 1]
Length = 319
Score = 96.9 bits (240), Expect = 3e-18, Method: Composition-based stats.
Identities = 37/185 (20%), Positives = 77/185 (41%), Gaps = 7/185 (3%)
Query: 144 YPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQA 203
Y IL+ VG P +++ N KR DAL ++ + +G S QA
Sbjct: 109 YLVTQNFALAILLALVGAVLPLLFLKNAKMKRLQKFNDQLGDALGIMSNSLRAGFSFLQA 168
Query: 204 LRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDR 263
+ +++++ P+S E + E+ + A N R + D + A+ +
Sbjct: 169 MDSLSKEL---PPPISTEFGRALKEMRLGTPTEEALANMTERIRSDDLDLIVTAVNIQRQ 225
Query: 264 YGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIG---PAIL 320
G ++ + L + + M+ E K + +++ I+ LPV ++ +I P+ +
Sbjct: 226 VGGNLAEILDNIGNTISERVRMKGEIKTLTAQGRISG-TIVALLPVFLVGVISVMNPSYI 284
Query: 321 SIIDT 325
++ T
Sbjct: 285 GLLFT 289
>gi|153811267|ref|ZP_01963935.1| hypothetical protein RUMOBE_01659 [Ruminococcus obeum ATCC 29174]
gi|149832765|gb|EDM87849.1| hypothetical protein RUMOBE_01659 [Ruminococcus obeum ATCC 29174]
Length = 342
Score = 96.9 bits (240), Expect = 4e-18, Method: Composition-based stats.
Identities = 35/155 (22%), Positives = 65/155 (41%), Gaps = 6/155 (3%)
Query: 173 QKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVP----LSEEMLLTIAE 228
KR + +P + + +++G+++ +A ++++ D E + T E
Sbjct: 187 AKRAEQLLMDYPSLIMKFTLLIQAGMTVRRAFQKISSDYLRNCPKEGRYAYEAVTTTCHE 246
Query: 229 LSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGT-SIGDSLRVLVSETRSERLMEA 287
+ A+ F R + + LIQ+ + G + D L E ER +A
Sbjct: 247 MDSGVAELEAYRRFGERCGQMKYKTFSTILIQNLQKGGHRMADLLEKEALEAWDERKRKA 306
Query: 288 EKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
+ KL VPMI+ L V++ +I+ PA LS
Sbjct: 307 RVMGETAATKLLVPMIM-MLAVVMAIIMIPAFLSF 340
>gi|301165544|emb|CBW25115.1| putative pilus assembly-related protein [Bacteriovorax marinus SJ]
Length = 296
Score = 96.9 bits (240), Expect = 4e-18, Method: Composition-based stats.
Identities = 32/190 (16%), Positives = 79/190 (41%), Gaps = 6/190 (3%)
Query: 120 RLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSI 179
++ ++ +G+ + + + ++ G++GF P I+ LV +R ++
Sbjct: 62 KITYALLGCSVGLGCFMFLLFGVLGQWVIGFILGLIFGFIGFKVPKPLINYLVDRRINAY 121
Query: 180 KRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAF 239
DAL LL + +G+S+ QA+ V +++ P+S+E + + + + F
Sbjct: 122 SAQMVDALTLLSNGIRAGLSVPQAIGMVVDEM---PAPVSQEFNMILQQNRIGVPLEECF 178
Query: 240 ENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPK-L 298
+N R + ++ G ++ + +V R + ++K + + +
Sbjct: 179 DNLSKRIPTEDNDMFVSSINILRETGGNLAEVFDTIVDVIRE--RVRLKQKIDTFTAQGM 236
Query: 299 TVPMIIFFLP 308
+ IF +P
Sbjct: 237 FQGLTIFLMP 246
>gi|330969402|gb|EGH69468.1| type II secretion system protein [Pseudomonas syringae pv. aceris
str. M302273PT]
Length = 220
Score = 96.9 bits (240), Expect = 4e-18, Method: Composition-based stats.
Identities = 37/208 (17%), Positives = 86/208 (41%), Gaps = 11/208 (5%)
Query: 46 KSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAA 105
+ + ER + R+ + +++ S LR ++ ++I +D L
Sbjct: 23 RQRSNERLVARRLRGQVIRESRIGSLLRLLGDT-------RIGQRSISLDSETQILLNRI 75
Query: 106 GFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPS 165
G+R ++ ++ VP+ +++ I+ + K ++ P + A I G+ P
Sbjct: 76 GWRRASKRSLFAACQVGVPVGLMVVAILGQMLFFKGVQQP----LIAPIFALGAGYLLPK 131
Query: 166 VWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLT 225
++ + ++RQ + + LL I ESG++++QALR ++ + LSEE+ +
Sbjct: 132 RILATVARRRQKQVVVEISTFIPLLRILFESGMAVEQALRVLSNEGKDLLPVLSEEIRVV 191
Query: 226 IAELSFLPNRQVAFENFYNRTQMDCVRN 253
+ + +D + +
Sbjct: 192 LTRVDSGLELGEELRKTAAVLDVDELSD 219
>gi|73542333|ref|YP_296853.1| type II secretion system protein [Ralstonia eutropha JMP134]
gi|72119746|gb|AAZ62009.1| type II secretion system protein [Ralstonia eutropha JMP134]
Length = 325
Score = 96.9 bits (240), Expect = 4e-18, Method: Composition-based stats.
Identities = 52/318 (16%), Positives = 121/318 (38%), Gaps = 38/318 (11%)
Query: 15 AVAITTAVSIFSLIYAVVIPS-----LGSGELEKRMKSVAVEREILRKQQITSLQKDSAS 69
A I V++ + + I + +E R+++++ + +Q++ L+K +
Sbjct: 7 AFGILLFVAVVLCVEGIFIWWNSTHGAAAKRIEARLRALSAG-GQVGAEQLSILKKRLLA 65
Query: 70 SRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLI 129
R + V L+ L +G S +S+ LL V + +
Sbjct: 66 GSPRMQQWLMSLPRVGSLD-----------RWLEQSG--STWSVAQLLGYCATVALCTIA 112
Query: 130 LGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDL 189
L + +++ V P + I L KR ++ PDA+D+
Sbjct: 113 L------------IPVVPVPAPLMLVGAAVAAVLPVLHIMRLRAKRIQQMESQLPDAVDM 160
Query: 190 LLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMD 249
+ + +G S AL V +++ P++ E T E+++ A N R +
Sbjct: 161 IARALRAGHSFSGALGMVGQEMKA---PIAPEFRTTFEEINYGIALDEAMTNLAIRVPVG 217
Query: 250 CVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPV 309
+R A++ G ++ + L + + R + A+ + S +++ ++ LP
Sbjct: 218 DLRYFVIAVLIQRESGGNLAEILDTIGNMVRERLKLFAKIRVLSAEGRMSA-WVLGLLPF 276
Query: 310 L---ILVIIGPAILSIID 324
+++++ P + ++
Sbjct: 277 ATGGMILVVNPDFMKVLW 294
>gi|254487450|ref|ZP_05100655.1| type II/IV secretion system protein, TadC subfamily [Roseobacter
sp. GAI101]
gi|214044319|gb|EEB84957.1| type II/IV secretion system protein, TadC subfamily [Roseobacter
sp. GAI101]
Length = 320
Score = 96.9 bits (240), Expect = 4e-18, Method: Composition-based stats.
Identities = 57/305 (18%), Positives = 117/305 (38%), Gaps = 30/305 (9%)
Query: 11 ATELAVAITTAVSIFSLIYAVVIPSLGSG-ELEKRMKSVAVEREILRKQQITSLQKDSAS 69
+ E + + + L+ + + + G L R V E+L K +++
Sbjct: 2 SAEPLIYGLIFIGVLVLVEGLYLVAFGKSISLNSR---VNRRLEMLEK----GTRREEVL 54
Query: 70 SRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLI 129
+LR + + N K+I + + +++ + +L++ + L
Sbjct: 55 DKLRKEMQQHMDN-------KSIPIYSMLAA-------KAQKAAIAFSPKQLIMLMGGLS 100
Query: 130 LGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDL 189
+ E P + + I IG V F WIS+ +KR S I+ PDA++L
Sbjct: 101 VVAFMGLTIGTATEVPIRAVISVAIGIGAVYF-----WISSKAKKRMSMIEEQLPDAVEL 155
Query: 190 LLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMD 249
++ + G A+ V+++I PL+ E + E ++ + A + R M
Sbjct: 156 MVRSLRVGHPFTNAIAIVSKEIQD---PLASEFGIISDEAAYGRDIGEALKEMAERLDMQ 212
Query: 250 CVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPV 309
+R A+ + G ++ + L L R+ + A + K + + F V
Sbjct: 213 DLRFLAVAVTIQQQSGGNLAEILAGLAKVIRARFKLFRRVNAITAEAKWSGKFLSAFPIV 272
Query: 310 LILVI 314
++VI
Sbjct: 273 ALIVI 277
>gi|260431088|ref|ZP_05785059.1| type II/IV secretion system protein, TadC subfamily [Silicibacter
lacuscaerulensis ITI-1157]
gi|260414916|gb|EEX08175.1| type II/IV secretion system protein, TadC subfamily [Silicibacter
lacuscaerulensis ITI-1157]
Length = 322
Score = 96.5 bits (239), Expect = 4e-18, Method: Composition-based stats.
Identities = 48/288 (16%), Positives = 112/288 (38%), Gaps = 30/288 (10%)
Query: 11 ATELAVAITTAVSIFSLIYAVVIPSLGSG-ELEKRMKSVAVEREILRKQQITSLQKDSAS 69
E + + V + +L+ + + + G L R V ++L K + ++
Sbjct: 4 PIEALIYVAIFVGVLALVEGIYLVAFGKSISLNSR---VNRRLDMLDK----GVGREQVL 56
Query: 70 SRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLI 129
+LR + +++ + + L ++L D +++ + +L++ I +
Sbjct: 57 EQLRKEMQQHMKS--QSIPLYSLLAD------------KAQKAAIAFSPRQLIM--IMGL 100
Query: 130 LGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDL 189
+ ++ G LRV IG A W+++ +KR + ++ PDA++L
Sbjct: 101 VSVVAFMGLSIGTSTDIVLRVALSAAIGVGAVYA---WVNHKAKKRMALLEEQLPDAVEL 157
Query: 190 LLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMD 249
++ + G +++ VA ++ PL E + E ++ A ++ R M
Sbjct: 158 MVRSLRVGNPFVSSIQIVANEVQD---PLGTEFGVIADECAYGRGVGEALKDMAERLDMQ 214
Query: 250 CVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPK 297
+R A+ + G ++ + L L R+ + A + K
Sbjct: 215 DLRFLAVAVGIQQQSGGNLAEILAGLAKVIRARFRLFRRVNAITAEAK 262
>gi|264678229|ref|YP_003278136.1| type II secretion system protein [Comamonas testosteroni CNB-2]
gi|262208742|gb|ACY32840.1| type II secretion system protein [Comamonas testosteroni CNB-2]
Length = 329
Score = 96.5 bits (239), Expect = 4e-18, Method: Composition-based stats.
Identities = 45/258 (17%), Positives = 103/258 (39%), Gaps = 18/258 (6%)
Query: 43 KRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKL 102
K+ KS +R R + +++ +S ++L S ++++ L+ + + +
Sbjct: 33 KQYKSPEAKRLERRLRALSAADDNSNPTKLVKERVLSDMPRMQRV-LQTMPRAHQLDRFI 91
Query: 103 RAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFC 162
+G L + L+LG +F L + + +L V
Sbjct: 92 VQSG--------------LDWTVSGLLLGSAILFALGMLTTMMLRQPMELGVLSSLVLGS 137
Query: 163 APSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEM 222
P +++ R ++R P+ALDL+ + +G + +L+ E++ P+++E
Sbjct: 138 LPWLFLQRKRLLRLKRMERQLPEALDLIARALRAGHAFSASLQMAGEELTE---PIADEF 194
Query: 223 LLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSE 282
L E+++ + Q A N R + +R A++ G ++ + L L R
Sbjct: 195 RLVHDEINYGTSLQQALTNLGERVPITDLRYFIVAVLIQRESGGNLTEMLSNLSRLIRER 254
Query: 283 RLMEAEKKAASLGPKLTV 300
+ A+ + S +++
Sbjct: 255 LKLHAKVRVLSADGRMSA 272
>gi|222111306|ref|YP_002553570.1| type II secretion system protein [Acidovorax ebreus TPSY]
gi|221730750|gb|ACM33570.1| type II secretion system protein [Acidovorax ebreus TPSY]
Length = 279
Score = 96.5 bits (239), Expect = 5e-18, Method: Composition-based stats.
Identities = 43/168 (25%), Positives = 79/168 (47%), Gaps = 4/168 (2%)
Query: 149 RVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVA 208
V +L F P + L ++R++ + PDAL++L + SG S+ A+ VA
Sbjct: 74 AVPLAVLAAVGIFVLPRMAYGYLKRRREAKLIEQMPDALNMLAGSLRSGASLAIAMDLVA 133
Query: 209 EDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSI 268
+ P S+E+ L + E + + AFE+F R ++ V A+ S G ++
Sbjct: 134 TE---TPPPFSQELSLVLREQKLGVSLEDAFESFAKRVNLEDVNLLVSAITISKDVGGNL 190
Query: 269 GDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIG 316
+ L L S R++ ME + +A + KL +++ LPV + ++
Sbjct: 191 SEVLERLASTLRAKAAMEGKIRALTSQGKLQG-IVVGLLPVFLGFVLF 237
>gi|134291850|ref|YP_001115619.1| type II secretion system protein [Burkholderia vietnamiensis G4]
gi|134135039|gb|ABO59364.1| type II secretion system protein [Burkholderia vietnamiensis G4]
Length = 325
Score = 96.5 bits (239), Expect = 5e-18, Method: Composition-based stats.
Identities = 60/301 (19%), Positives = 115/301 (38%), Gaps = 27/301 (8%)
Query: 9 FDATELAVAITTAVSIFSLIYAVVIPSLGS-GELEKRMKSVAVEREILRKQQITSLQKDS 67
D+ I T V++ I V G +R++S LR +
Sbjct: 1 MDSIFYGFVILTFVAVVLAIEGVYQWWNARHGNAARRIES------RLRAMSAGGSVQQE 54
Query: 68 ASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIF 127
S L+ R + F +L L+ V +++ L+ +G V +LVV
Sbjct: 55 RMSILKKRMLDESKPF-DRLLLRVPRV-QSLDLVLQQSGL-------DWTVAKLVVLSGA 105
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
L + L + AV+ + C P+++++ ++R ++R PD
Sbjct: 106 LCAATALVLSV-------TPLPLVAVLPVALFAGCIPTLYVTRHRRRRMLKLERQLPDVC 158
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQ 247
D++ + SG S AL V E+ P+S E +T E+++ + A N R
Sbjct: 159 DMIARALRSGHSFTSALGMVGEEF---PEPMSGEFRITFDEINYGVSLHDALVNLATRVP 215
Query: 248 MDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFL 307
+ +R A++ G ++ + L + + R + + + S +L+ I+ L
Sbjct: 216 ANDLRYFVIAVLIQRETGGNLAELLDSIAALVRERFKLFDKVRVLSAEGRLSA-WILGLL 274
Query: 308 P 308
P
Sbjct: 275 P 275
>gi|115361040|ref|YP_778177.1| type II secretion system protein [Burkholderia ambifaria AMMD]
gi|115286368|gb|ABI91843.1| type II secretion system protein [Burkholderia ambifaria AMMD]
Length = 325
Score = 96.5 bits (239), Expect = 5e-18, Method: Composition-based stats.
Identities = 56/300 (18%), Positives = 111/300 (37%), Gaps = 25/300 (8%)
Query: 9 FDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSA 68
D+ I T V++ I V R LR +
Sbjct: 1 MDSIYYGFVILTFVAVVLAIEGVYQWWNARHGAAARR-----IESRLRAMSAGGSVQQER 55
Query: 69 SSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFL 128
S L+ R + F +L L + + + L+ +G ++++ L+ + V+P+
Sbjct: 56 LSILKKRMLDESKPF-DRL-LMRVPRIQALDLVLQQSGL--DWTVAKLVTISAVLPVTAA 111
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
+ + L + AV+ I + C P++++ +R ++R PD D
Sbjct: 112 LALAV------------TPLPLIAVLPIALLTACLPAMYVMRHRNRRMLKLERQLPDICD 159
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
++ + SG S AL V E+ P+ E +T E+++ + A N R
Sbjct: 160 MIARALRSGHSFSSALGMVGEEFPD---PMGGEFRITFDEINYGVSLHDALVNLATRVPA 216
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP 308
+R A++ G ++ + L + S R + + + S +L+ I+ LP
Sbjct: 217 HDLRYFVIAVLIQRETGGNLAELLDSIASLVRERFKLFDKVRVLSAEGRLSA-WILGLLP 275
>gi|76818607|ref|YP_336474.1| Flp pilus assembly protein TadB [Burkholderia pseudomallei 1710b]
gi|167851190|ref|ZP_02476698.1| Flp pilus assembly protein TadB [Burkholderia pseudomallei B7210]
gi|167899820|ref|ZP_02487221.1| Flp pilus assembly protein TadB [Burkholderia pseudomallei 7894]
gi|167916484|ref|ZP_02503575.1| Flp pilus assembly protein TadB [Burkholderia pseudomallei 112]
gi|167924341|ref|ZP_02511432.1| Flp pilus assembly protein TadB [Burkholderia pseudomallei BCC215]
gi|254187128|ref|ZP_04893643.1| type II secretion system protein [Burkholderia pseudomallei Pasteur
52237]
gi|254263188|ref|ZP_04954053.1| type II secretion system protein [Burkholderia pseudomallei 1710a]
gi|254296490|ref|ZP_04963946.1| type II secretion system protein [Burkholderia pseudomallei 406e]
gi|76583080|gb|ABA52554.1| Flp pilus assembly protein TadB [Burkholderia pseudomallei 1710b]
gi|157806462|gb|EDO83632.1| type II secretion system protein [Burkholderia pseudomallei 406e]
gi|157934811|gb|EDO90481.1| type II secretion system protein [Burkholderia pseudomallei Pasteur
52237]
gi|254214190|gb|EET03575.1| type II secretion system protein [Burkholderia pseudomallei 1710a]
Length = 325
Score = 96.5 bits (239), Expect = 5e-18, Method: Composition-based stats.
Identities = 51/295 (17%), Positives = 114/295 (38%), Gaps = 29/295 (9%)
Query: 33 IPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAI 92
+ G +R+++ +R + S L+ R + F +L L +
Sbjct: 26 WWNARHGPAARRIEA------RIRAMSAGGQVQKERLSILKERMLNDAKPF-DRL-LMRV 77
Query: 93 LVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGA 152
+ + ++ +G +S+ L + L +P + G+ L + A
Sbjct: 78 PRVQTLDLMIQQSGL--TWSVVKLAWISLAIPFAAFVA-----LGFTPLPLWATATASAA 130
Query: 153 VILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIG 212
+ C P++++ +R ++R PDA D++ + +G + A+ V +
Sbjct: 131 AV-------CLPTLFVLRCRTRRLRKLERQLPDACDMIARALRAGHAFSSAISMVGGEFA 183
Query: 213 GQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSL 272
P+ E +T E+++ + Q A N R + +R A++ G ++ + L
Sbjct: 184 E---PMGGEFRITFDEINYGVSLQEALLNLATRVPVSDLRYFVIAVLIQRETGGNLAELL 240
Query: 273 RVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP---VLILVIIGPAILSIID 324
+ R + + + S KL+ +I+ LP +L I+ P +S++
Sbjct: 241 DGIAQLIRERFKLFDKIRVLSAEGKLSA-LILTLLPFGTAALLSIMNPDFISVLW 294
>gi|242399929|ref|YP_002995354.1| Bacterial type II secretion system protein F domain protein
[Thermococcus sibiricus MM 739]
gi|242266323|gb|ACS91005.1| Bacterial type II secretion system protein F domain protein
[Thermococcus sibiricus MM 739]
Length = 353
Score = 96.5 bits (239), Expect = 5e-18, Method: Composition-based stats.
Identities = 44/201 (21%), Positives = 83/201 (41%), Gaps = 4/201 (1%)
Query: 121 LVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIK 180
+ + I I I+ F LL P + + +L GF ++ + R ++
Sbjct: 119 VALMIGVSIFTAIFAFILGVLLILPIDISIMLGLLGFIGGFLYMRNYLRFAWRGRVVEVE 178
Query: 181 RAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFE 240
+A P L + + +G+ I +A+ VA P+SEE L I ++ + + A
Sbjct: 179 KALPYVLRHMASLLSAGVGIAEAMVSVAN---ADYGPISEEFELMIRDMHGGTSFEDALT 235
Query: 241 NFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV 300
F R + V + ++++ R+G ++ D L L + E M+ + + V
Sbjct: 236 RFEERMASENVSRVVKQILRATRFGGNLADILYKLAEDFSFEYRMKLVEYIQKVNGIAFV 295
Query: 301 PM-IIFFLPVLILVIIGPAIL 320
M I +P L +V I A +
Sbjct: 296 YMFITIIMPTLFVVAILAASM 316
>gi|150377236|ref|YP_001313831.1| type II secretion system protein [Sinorhizobium medicae WSM419]
gi|150031783|gb|ABR63898.1| type II secretion system protein [Sinorhizobium medicae WSM419]
Length = 332
Score = 96.5 bits (239), Expect = 5e-18, Method: Composition-based stats.
Identities = 58/317 (18%), Positives = 118/317 (37%), Gaps = 26/317 (8%)
Query: 13 ELAVAITTAVSIFSLIYAVVIPSLGSGEL-EKRMKSVAVEREILRKQQITSLQKDSASSR 71
+ V + + SI ++ A P + +R+ ++ E R + +D
Sbjct: 8 PVFVFLLASTSIGGVMVAAFYPRVSKASAYRQRLARMSAPAENKRSEPTEPDGRDR---- 63
Query: 72 LRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILG 131
R K+LR +K A + +LR +G +S F++
Sbjct: 64 -RRSVEKTLREIEEKRQANARKGKTTLTARLRQSGLH--WSPKTY----------FVVCA 110
Query: 132 IIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLL 191
+ + +L V A I G P V+++ R + +P+A+D+++
Sbjct: 111 CAALASWCAMLLLDTGALVSAGFAISG-GLLLPHVYVNIKRNARFAKFTAEFPNAVDVIV 169
Query: 192 ICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCV 251
+++G+ + LR +A + P+ E L + + + A + R +
Sbjct: 170 RGLKAGLPMPDCLRVIATEAQE---PVKGEFLAIVQDQTLGIPVDEAVKRMSERMPLAEA 226
Query: 252 RNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLI 311
+ R G S+ ++L L R + M+A+ KA S K + II LP L+
Sbjct: 227 HFFAIVIAIQSRTGGSLSEALGNLSKVLRERKKMKAKIKAMSSEAKSSAG-IIGALPFLV 285
Query: 312 ---LVIIGPAILSIIDT 325
+ P ++++
Sbjct: 286 AGAVYFASPDYMALLFA 302
>gi|78357407|ref|YP_388856.1| hypothetical protein Dde_2364 [Desulfovibrio desulfuricans subsp.
desulfuricans str. G20]
gi|78219812|gb|ABB39161.1| membrane protein, putative [Desulfovibrio desulfuricans subsp.
desulfuricans str. G20]
Length = 321
Score = 96.5 bits (239), Expect = 6e-18, Method: Composition-based stats.
Identities = 56/310 (18%), Positives = 119/310 (38%), Gaps = 22/310 (7%)
Query: 19 TTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSK 78
++ + A I LG+G L + A R R + + + + + R +
Sbjct: 1 MILIATLLAVAACFILVLGTGNLLSARRHEAKVRVSRRLTALAVRHETAPPADIERRRAM 60
Query: 79 SLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGY 138
S ++ K +L +++ +L + + +N+ +++ V + I +
Sbjct: 61 SGMQWLDK-----VLSGRSVMRRLDLILEQGKTDINVGVIILAAVTLAAAGFAFIRLLTD 115
Query: 139 DKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGI 198
+ L + + P WI + +R + R PDALDL+ +++G
Sbjct: 116 NFWL----------CAVTPFAAGYLPFAWILSRRTRRMNRFHRQLPDALDLIARALKAGH 165
Query: 199 SIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQAL 258
+ Q +R VA++ P+ E +T+ E++F + A R +R ++
Sbjct: 166 AFPQGMRMVADEFAD---PVGPEFQITLDEINFGVSPDAALHAMTRRVDCADLRFFVVSV 222
Query: 259 IQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPV---LILVII 315
G ++ + + + R + K S +LT I+F LP I+ ++
Sbjct: 223 NIQRETGGNLAEIVSGIALLLRERFKLHGRVKVLSAEGRLTA-WILFALPFGIGFIIHLL 281
Query: 316 GPAILSIIDT 325
P +S + T
Sbjct: 282 NPDFMSALYT 291
>gi|319795560|ref|YP_004157200.1| type II secretion system f domain [Variovorax paradoxus EPS]
gi|315598023|gb|ADU39089.1| Type II secretion system F domain [Variovorax paradoxus EPS]
Length = 285
Score = 96.5 bits (239), Expect = 6e-18, Method: Composition-based stats.
Identities = 34/190 (17%), Positives = 79/190 (41%), Gaps = 4/190 (2%)
Query: 126 IFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPD 185
+ G ++ + + ++ V + P+ W + +KR+ I+ PD
Sbjct: 58 VAFASGHAFLVALCGAIGWLISGNPLGGLVAATVLYLLPARWFAWQRKKRRQQIESELPD 117
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
AL + + +G ++ A++ + D G PL +E L + E + A + R
Sbjct: 118 ALLFIASALRAGSALSVAVQVLVRDQQG---PLGQEFGLVLKEQRLGVSFDDAIQKMSQR 174
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
+ AL S G ++ + L+VL R + ++E +A + ++ +++
Sbjct: 175 LGIPDFVLVVVALRVSKEVGGNLSEPLQVLAETLRRKAILEGRIQALTAQGRIQG-LVMT 233
Query: 306 FLPVLILVII 315
P+L++ ++
Sbjct: 234 LFPLLLMGVL 243
>gi|168702878|ref|ZP_02735155.1| secretion system protein TadB [Gemmata obscuriglobus UQM 2246]
Length = 319
Score = 96.1 bits (238), Expect = 6e-18, Method: Composition-based stats.
Identities = 29/188 (15%), Positives = 71/188 (37%), Gaps = 3/188 (1%)
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
+ GI + + + + + F P VW+ R + PDA+
Sbjct: 93 ALFGISLGLSVLGAAMSIWLVNLYVLPIGALTCFALPWVWLHMKRSSRLKAFAAQLPDAM 152
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQ 247
+L+ + +G S+ + VAE++ P+ +E E + + A + +R
Sbjct: 153 ELVARALRAGHSLAAGMHVVAEEM---PAPICKEFGRVYEEQNLGIPLEEALKGMCDRVP 209
Query: 248 MDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFL 307
++ ++ + G + + L + R + + KA + +L+ ++I
Sbjct: 210 NLDLKFFVTSVAIQRQTGGDLAEILDRIGHIIRERFKILGQVKALTAEGRLSGVVLIALP 269
Query: 308 PVLILVII 315
L ++++
Sbjct: 270 IGLFVMML 277
>gi|319788659|ref|YP_004148134.1| type II secretion system F domain [Pseudoxanthomonas suwonensis
11-1]
gi|317467171|gb|ADV28903.1| Type II secretion system F domain [Pseudoxanthomonas suwonensis
11-1]
Length = 282
Score = 96.1 bits (238), Expect = 6e-18, Method: Composition-based stats.
Identities = 42/185 (22%), Positives = 75/185 (40%), Gaps = 4/185 (2%)
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
L + I LL + + I V AP L ++R I+ PDAL
Sbjct: 56 LFMANILALVVGPLLVWMATGTLLFAIFAAVVIAVAPRRIYVMLRRRRLDRIQEQLPDAL 115
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQ 247
+L + +G+ A+ + +D PL++E+ L + + A E+F R
Sbjct: 116 QMLASSLRAGVGFSPAMEVLVQDGQ---PPLAQELALVLRQQHMGVRADEALESFSKRVP 172
Query: 248 MDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFL 307
+ A+ S G ++ ++L L R +ME + KA + KL +++ L
Sbjct: 173 IVDAELFVSAVNISREVGGNLAETLATLAETLRRRLIMEKKVKALTAQGKLQG-IVMALL 231
Query: 308 PVLIL 312
PV ++
Sbjct: 232 PVFLV 236
>gi|172065280|ref|YP_001815992.1| type II secretion system protein [Burkholderia ambifaria MC40-6]
gi|171997522|gb|ACB68439.1| type II secretion system protein [Burkholderia ambifaria MC40-6]
Length = 325
Score = 96.1 bits (238), Expect = 6e-18, Method: Composition-based stats.
Identities = 55/300 (18%), Positives = 110/300 (36%), Gaps = 25/300 (8%)
Query: 9 FDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSA 68
D+ I T V++ I V R LR +
Sbjct: 1 MDSIYYGFVILTFVAVVLAIEGVYQWWNARHGAAARR-----IESRLRAMSAGGSVQQER 55
Query: 69 SSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFL 128
S L+ R + F +L L + + + L+ +G ++++ L+ + V+P+
Sbjct: 56 LSILKKRMLDESKPF-DRL-LMRVPRIQALDLVLQQSGL--DWTVAKLVAISAVLPVTAA 111
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
+ + L + V+ I + C P++++ +R ++R PD D
Sbjct: 112 LALAV------------TPLPLIVVLPIALLTACLPAMYVMRHRNRRMLKLERQLPDICD 159
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
++ + SG S AL V E+ P+ E +T E+++ + A N R
Sbjct: 160 MIARALRSGHSFSSALGMVGEEFPD---PMGGEFRITFDEINYGVSLHDALVNLATRVPA 216
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP 308
+R A++ G ++ + L + S R + + + S +L+ I+ LP
Sbjct: 217 HDLRYFVIAVLIQRETGGNLAELLDSIASLVRERFKLFDKVRVLSAEGRLSA-WILGLLP 275
>gi|167463709|ref|ZP_02328798.1| type II secretion system protein [Paenibacillus larvae subsp.
larvae BRL-230010]
Length = 288
Score = 96.1 bits (238), Expect = 7e-18, Method: Composition-based stats.
Identities = 37/217 (17%), Positives = 83/217 (38%), Gaps = 6/217 (2%)
Query: 108 RSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVW 167
+ ++ ++ + F++L + G + A I
Sbjct: 75 PRQQAIRTKYYAVEMLSLSFIVLAGFILLGLVSGEGPVLVIFGLAGAGITPALLF---RT 131
Query: 168 ISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAED-IGGQSVPLSEEMLLTI 226
+ ++K++ SI P+ L+ +++ V++G ++ + R +D PL E++
Sbjct: 132 LDQKLKKKKHSILIELPEFLNKIILLVDAGETVQASFIRCIDDRAEKPLSPLQAELIKCK 191
Query: 227 AELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGT-SIGDSLRVLVSETRSERLM 285
EL + + R M + T ++ + + G + +LR L + R
Sbjct: 192 RELLMNVSLNKSLGELTRRCSMQEISMFTTTVLLNYKRGGHDLTVALRNLSKDLWERRKA 251
Query: 286 EAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
+ KL PM + FL V+++V PA++ +
Sbjct: 252 VSRILGEEASSKLVFPMALIFLIVIVIV-AAPAMMMM 287
>gi|53723214|ref|YP_112199.1| hypothetical protein BPSS2197 [Burkholderia pseudomallei K96243]
gi|126444529|ref|YP_001064083.1| type II secretion system protein [Burkholderia pseudomallei 668]
gi|126455490|ref|YP_001076996.1| type II secretion system protein [Burkholderia pseudomallei 1106a]
gi|167725255|ref|ZP_02408491.1| Flp pilus assembly protein TadB [Burkholderia pseudomallei DM98]
gi|167744182|ref|ZP_02416956.1| Flp pilus assembly protein TadB [Burkholderia pseudomallei 14]
gi|167821381|ref|ZP_02453061.1| Flp pilus assembly protein TadB [Burkholderia pseudomallei 91]
gi|167829723|ref|ZP_02461194.1| Flp pilus assembly protein TadB [Burkholderia pseudomallei 9]
gi|226194129|ref|ZP_03789729.1| type II secretion system protein [Burkholderia pseudomallei
Pakistan 9]
gi|237509857|ref|ZP_04522572.1| putative membrane protein [Burkholderia pseudomallei MSHR346]
gi|242313100|ref|ZP_04812117.1| type II secretion system protein [Burkholderia pseudomallei 1106b]
gi|52213628|emb|CAH39682.1| putative membrane protein [Burkholderia pseudomallei K96243]
gi|126224020|gb|ABN87525.1| type II secretion system protein [Burkholderia pseudomallei 668]
gi|126229258|gb|ABN92671.1| type II secretion system protein [Burkholderia pseudomallei 1106a]
gi|225933822|gb|EEH29809.1| type II secretion system protein [Burkholderia pseudomallei
Pakistan 9]
gi|235002062|gb|EEP51486.1| putative membrane protein [Burkholderia pseudomallei MSHR346]
gi|242136339|gb|EES22742.1| type II secretion system protein [Burkholderia pseudomallei 1106b]
Length = 325
Score = 96.1 bits (238), Expect = 7e-18, Method: Composition-based stats.
Identities = 50/295 (16%), Positives = 111/295 (37%), Gaps = 29/295 (9%)
Query: 33 IPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAI 92
+ G +R+++ +R + S L+ R + F +L L +
Sbjct: 26 WWNARHGPAARRIEA------RIRAMSAGGQVQKERLSILKERMLNDAKPF-DRL-LMRV 77
Query: 93 LVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGA 152
+ + ++ +G +S+ L + L +P + L + A
Sbjct: 78 PRVQTLDLMIQQSGL--TWSVVKLAWISLAIPFAAFVALGF------------TPLPLWA 123
Query: 153 VILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIG 212
C P++++ +R ++R PDA D++ + +G + A+ V +
Sbjct: 124 TATASVAAVCLPTLFVLRCRTRRLRKLERQLPDACDMIARALRAGHAFSSAISMVGGEFA 183
Query: 213 GQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSL 272
P+ E +T E+++ + Q A N R + +R A++ G ++ + L
Sbjct: 184 E---PMGGEFRITFDEINYGVSLQEALLNLATRVPVSDLRYFVIAVLIQRETGGNLAELL 240
Query: 273 RVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP---VLILVIIGPAILSIID 324
+ R + + + S KL+ +I+ LP +L I+ P +S++
Sbjct: 241 DGIAQLIRERFKLFDKIRVLSAEGKLSA-LILTLLPFGTAALLSIMNPDFISVLW 294
>gi|269836552|ref|YP_003318780.1| type II secretion system protein [Sphaerobacter thermophilus DSM
20745]
gi|269785815|gb|ACZ37958.1| type II secretion system protein [Sphaerobacter thermophilus DSM
20745]
Length = 326
Score = 96.1 bits (238), Expect = 7e-18, Method: Composition-based stats.
Identities = 61/295 (20%), Positives = 115/295 (38%), Gaps = 16/295 (5%)
Query: 32 VIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKA 91
+ G L R ++VA E E R ++ SL+ + S R L V ++ ++
Sbjct: 14 AAGLVALGLLVSREQAVAPELEE-RLERFASLEPLATESLSGARTPNVLAQQVDRV-VQG 71
Query: 92 ILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVG 151
E + L A R ++ L+VR +LG + G + + V
Sbjct: 72 KTFSEAVALLLARANIR--MTVGEFLIVRAGSASFGFLLGFLLGRGITQPVLGLLVGLVV 129
Query: 152 AVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDI 211
A+I G+ P +IS ++R ++ D + L+ + +G S+ Q + VA +
Sbjct: 130 ALI-----GWMVPHWYISVRARRRTNAFVNQLGDTITLMANSLRAGYSLLQTMELVARE- 183
Query: 212 GGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDS 271
P+SEE + E+ Q A + R + + A+ G ++
Sbjct: 184 --TPPPMSEEFRRVVREVGLGIPTQEAMSHLLRRVPSEDLDLLITAINVQHEVGGNLAQI 241
Query: 272 LRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP---VLILVIIGPAILSII 323
L V+ R ++ E + + ++ II LP L+L++I P + +
Sbjct: 242 LDVIGETIRERVRIKGEIRVLTAQQSISG-YIISALPVGLALLLMVINPGYVMGM 295
>gi|261856882|ref|YP_003264165.1| type II secretion system F domain protein [Halothiobacillus
neapolitanus c2]
gi|261837351|gb|ACX97118.1| Type II secretion system F domain protein [Halothiobacillus
neapolitanus c2]
Length = 284
Score = 96.1 bits (238), Expect = 7e-18, Method: Composition-based stats.
Identities = 35/151 (23%), Positives = 66/151 (43%), Gaps = 3/151 (1%)
Query: 164 PSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEML 223
P + + L Q+R I++ PD L ++ + +G+ AL +A D PL++E
Sbjct: 94 PKKFYAWLKQRRIDKIQQQLPDGLMMVSGSMRAGLGFTAALESLARD---TDPPLAQEFA 150
Query: 224 LTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSER 283
L + E + A +F +R + V A+ S G ++ +SL L S R
Sbjct: 151 LVLREQRMGVKLEDALLHFNDRVPVQDVTLFVSAVNISREVGGNLAESLTSLASTLRRRL 210
Query: 284 LMEAEKKAASLGPKLTVPMIIFFLPVLILVI 314
+ME + K+ + +L ++ L+ +
Sbjct: 211 IMEGKVKSLTAQGRLQGIVMALMPVGLLTFL 241
>gi|332560333|ref|ZP_08414655.1| Type II secretion system protein [Rhodobacter sphaeroides WS8N]
gi|332278045|gb|EGJ23360.1| Type II secretion system protein [Rhodobacter sphaeroides WS8N]
Length = 322
Score = 95.7 bits (237), Expect = 8e-18, Method: Composition-based stats.
Identities = 49/302 (16%), Positives = 112/302 (37%), Gaps = 31/302 (10%)
Query: 15 AVAITTAVSIFSLIYAVVIPSLGSG-ELEKRMKSVAVEREILRKQQITSLQKDSASSRLR 73
+ I V++ L+ + + G L R+ +++ L+K+ ++
Sbjct: 8 IIYILIFVAVLLLVEGIYLTVFGKTISLNSRVS-----------RRLALLEKNQNREQVL 56
Query: 74 TRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGII 133
+ K + + + + + K NI + +V I+ L+ +
Sbjct: 57 EQLRKEMSQHMNARGIPLYAILASKAQK-----------ANIAFSPKALVGIMVLLSAVA 105
Query: 134 WIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLIC 193
++ P A+++ + W++ +KR + I+ PDA++L++
Sbjct: 106 YLGLTIGTSAAPLVRGAVALVMGVGAVYV----WVNGKAKKRMALIEEQLPDAVELMVRS 161
Query: 194 VESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRN 253
+ G A++ VA+++ PL E + E ++ + F R + +R
Sbjct: 162 LRVGHPFSSAIQIVAKEVPD---PLGTEFGVIADEAAYGRDVAECIRAFAERMESQDLRF 218
Query: 254 ATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILV 313
A+ + G ++ + L L RS + KA + K + + P++ LV
Sbjct: 219 LAVAVTIQQQSGGNLAEILEGLAKVIRSRFKLFRRVKAITAEAKWSG-TFLSAFPIVALV 277
Query: 314 II 315
I
Sbjct: 278 AI 279
>gi|307721765|ref|YP_003892905.1| hypothetical protein Saut_1849 [Sulfurimonas autotrophica DSM
16294]
gi|306979858|gb|ADN09893.1| hypothetical protein Saut_1849 [Sulfurimonas autotrophica DSM
16294]
Length = 278
Score = 95.7 bits (237), Expect = 8e-18, Method: Composition-based stats.
Identities = 49/224 (21%), Positives = 89/224 (39%), Gaps = 11/224 (4%)
Query: 97 NIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILI 156
KL+ AG + + I+ IL + +L+ F + ++
Sbjct: 57 EFKLKLQRAGLKRKQFNEIIFAS---------ILAGASLIFLVFILDLSFLNELFLFVIG 107
Query: 157 GYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQS- 215
+ P +++ ++ R I+ P +DLL+I +E G ++ A+ +V +
Sbjct: 108 IGIAVFMPYLYLQEQIKARIKRIENDLPIFIDLLIIILEGGGGLNNAIDKVTTEGESVLG 167
Query: 216 VPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVL 275
L EE E + +A+ N NRT D + + S+ G +
Sbjct: 168 PDLLEESKKFKNEF-ITYSSDIAYTNLVNRTGSDSIATIVGFMRLSEETGIGVKSIFENQ 226
Query: 276 VSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAI 319
E +S ++ EKKAA++ +T M IF LP +I +I P
Sbjct: 227 AQELKSMEMLNIEKKAATMNIGITFVMFIFILPAVIAMIAFPMA 270
>gi|241662161|ref|YP_002980521.1| type II secretion system protein [Ralstonia pickettii 12D]
gi|240864188|gb|ACS61849.1| type II secretion system protein [Ralstonia pickettii 12D]
Length = 325
Score = 95.7 bits (237), Expect = 9e-18, Method: Composition-based stats.
Identities = 50/318 (15%), Positives = 122/318 (38%), Gaps = 25/318 (7%)
Query: 9 FDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSA 68
D + A++ +++ + AV + R S L+ +S+
Sbjct: 1 MDPLVIGFALSVFIAMMLAVLAVYLWWDTRHSSAARRFSH-----RLKMALASSVSHGGT 55
Query: 69 SSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFL 128
S L+ R L + + + +L +G ++S++ + L+VP +
Sbjct: 56 DSILKQRMLSESPEVAAMLG--RLPRIQTLDRRLLQSGL--DWSVSRFFALTLMVPAMIA 111
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
I+ + F +++ G P++++ + +R ++ P+A D
Sbjct: 112 IVFSL------------FDPPPMTLLVFVLAGASLPALYVMHRRTRRLLKLEAQLPEATD 159
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
L+ + +G S+ AL ++ P+ E+ + ++++F + AF +R +
Sbjct: 160 LISRALRAGHSLPAALEMAGTEL---PAPIGAELAIVFSQINFGVSMSDAFAGLTDRVPV 216
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP 308
D +R A++ G ++ + L + R + + + S +L I+ LP
Sbjct: 217 DDLRYLVIAILIQRESGGNLAEILDNVGKLIRKRLQLLDKVRVLSAEGRL-GGWILTLLP 275
Query: 309 VLILVIIGPAILSIIDTM 326
++ + I ++ T+
Sbjct: 276 PVMGLAIYLLNPELMSTL 293
>gi|134281818|ref|ZP_01768525.1| type II secretion system protein [Burkholderia pseudomallei 305]
gi|167908137|ref|ZP_02495342.1| Flp pilus assembly protein TadB [Burkholderia pseudomallei NCTC
13177]
gi|134246880|gb|EBA46967.1| type II secretion system protein [Burkholderia pseudomallei 305]
Length = 325
Score = 95.7 bits (237), Expect = 9e-18, Method: Composition-based stats.
Identities = 50/295 (16%), Positives = 112/295 (37%), Gaps = 29/295 (9%)
Query: 33 IPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAI 92
+ G +R+++ +R + S L+ R + F +L ++
Sbjct: 26 WWNARHGPAARRIEA------RIRAMSAGGQVQKERLSILKERMLNDAKPF-DRLLMRVP 78
Query: 93 LVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGA 152
V + + ++ +G +S+ L + L +P + L + A
Sbjct: 79 RV-QTLDLMIQQSGL--TWSVVKLAWISLAIPFAAFVALGF------------TPLPLWA 123
Query: 153 VILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIG 212
C P++++ +R ++R PDA D++ + +G + A+ V +
Sbjct: 124 TATASVAAVCLPTLFVLRCRTRRLRKLERQLPDACDMIARALRAGHAFSSAISMVGGEFA 183
Query: 213 GQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSL 272
P+ E +T E+++ + Q A N R + +R A++ G ++ + L
Sbjct: 184 E---PMGGEFRITFDEINYGVSLQEALLNLATRVPVSDLRYFVIAVLIQRETGGNLAELL 240
Query: 273 RVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP---VLILVIIGPAILSIID 324
+ R + + + S KL+ +I+ LP +L I+ P +S++
Sbjct: 241 DGIAQLIRERFKLFDKIRVLSAEGKLSA-LILTLLPFGTAALLSIMNPDFISVLW 294
>gi|163846104|ref|YP_001634148.1| type II secretion system protein [Chloroflexus aurantiacus J-10-fl]
gi|222523839|ref|YP_002568309.1| type II secretion system protein [Chloroflexus sp. Y-400-fl]
gi|163667393|gb|ABY33759.1| type II secretion system protein [Chloroflexus aurantiacus J-10-fl]
gi|222447718|gb|ACM51984.1| type II secretion system protein [Chloroflexus sp. Y-400-fl]
Length = 332
Score = 95.7 bits (237), Expect = 9e-18, Method: Composition-based stats.
Identities = 33/234 (14%), Positives = 86/234 (36%), Gaps = 14/234 (5%)
Query: 96 ENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVIL 155
+I +L A + ++ + ++L ++ ++ G I L F ++GA
Sbjct: 79 SSIQRELARADL--KLTVAEFIGLKLGAALLGVVFGFI-------LGRANFLAQIGAATA 129
Query: 156 IGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQS 215
V P+++++ +R + D + ++ + G S Q L V+ +
Sbjct: 130 AAIVFSFLPNLYVNMRAAQRIKAFNNQLGDVITMMANALRGGYSFLQTLDMVSRE---AP 186
Query: 216 VPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVL 275
P + E + E+ + + A +N R D + A+ G ++ L +
Sbjct: 187 PPAATEFRRVVQEVGLGRSTEEALQNLLRRMPSDDLDLLITAVTIQMEVGGNLAQILDTI 246
Query: 276 VSETRSERLMEAEKKAASLGPKLT--VPMIIFFLPVLILVIIGPAILSIIDTMK 327
R ++ E + +++ + + + + ++ P ++ + T
Sbjct: 247 GHTIRERVRIKGEISTLTAQGRISSWIITGLPIGLAMFITVVNPDYMAPLFTFG 300
>gi|217424158|ref|ZP_03455657.1| type II secretion system protein [Burkholderia pseudomallei 576]
gi|254192376|ref|ZP_04898815.1| type II secretion system protein [Burkholderia pseudomallei S13]
gi|169649134|gb|EDS81827.1| type II secretion system protein [Burkholderia pseudomallei S13]
gi|217392623|gb|EEC32646.1| type II secretion system protein [Burkholderia pseudomallei 576]
Length = 330
Score = 95.3 bits (236), Expect = 1e-17, Method: Composition-based stats.
Identities = 50/295 (16%), Positives = 112/295 (37%), Gaps = 29/295 (9%)
Query: 33 IPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAI 92
+ G +R+++ +R + S L+ R + F +L ++
Sbjct: 31 WWNARHGPAARRIEA------RIRAMSAGGQVQKERLSILKERMLNDAKPF-DRLLMRVP 83
Query: 93 LVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGA 152
V + + ++ +G +S+ L + L +P + L + A
Sbjct: 84 RV-QTLDLMIQQSGL--TWSVVKLAWISLAIPFAAFVALGF------------TPLPLWA 128
Query: 153 VILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIG 212
C P++++ +R ++R PDA D++ + +G + A+ V +
Sbjct: 129 TATASVAAVCLPTLFVLRCRTRRLRKLERQLPDACDMIARALRAGHAFSSAISMVGGEFA 188
Query: 213 GQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSL 272
P+ E +T E+++ + Q A N R + +R A++ G ++ + L
Sbjct: 189 E---PMGGEFRITFDEINYGVSLQEALLNLATRVPVSDLRYFVIAVLIQRETGGNLAELL 245
Query: 273 RVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP---VLILVIIGPAILSIID 324
+ R + + + S KL+ +I+ LP +L I+ P +S++
Sbjct: 246 DGIAQLIRERFKLFDKIRVLSAEGKLSA-LILTLLPFGTAALLSIMNPDFISVLW 299
>gi|320101694|ref|YP_004177285.1| type II secretion system F domain-containing protein [Isosphaera
pallida ATCC 43644]
gi|319748976|gb|ADV60736.1| Type II secretion system F domain protein [Isosphaera pallida ATCC
43644]
Length = 331
Score = 95.3 bits (236), Expect = 1e-17, Method: Composition-based stats.
Identities = 53/295 (17%), Positives = 113/295 (38%), Gaps = 26/295 (8%)
Query: 8 LFDATELAVAITTAVSIFSLIYAVV-IPSLGSGELEKRMKSVAVEREILRKQQITSLQKD 66
+ + E+ + ++ L++ V + + E R+K V + Q+ K
Sbjct: 1 MPISPEMLILGLIGLAAIILVFGVSQLLATPRNNAEDRLKKV------ISAQKAPQGPKA 54
Query: 67 SASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAA--GFRSEYSLNILLVVRLVVP 124
SA S ++ S LK + ++I + A G L I+ + +
Sbjct: 55 SAISVVKQEVMPSDNPL-----LKMLPKLDSIADLYEQAHLGIPFTNFLVIVAALMALPM 109
Query: 125 IIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWP 184
+++L + G +P + V+ I + ++ + +KR + A P
Sbjct: 110 VVYLATTTLGYAGILPFYVFPIASVLFGVMSIAF---------LNYMKKKRINDFTAAMP 160
Query: 185 DALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYN 244
+AL+L + +G + L+ VA+++ G P++EE E + + A N
Sbjct: 161 EALELTGRALRAGHGLGSGLKMVADEMTG---PIAEEFGRVFEEQNLGIPMEEALRAMAN 217
Query: 245 RTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLT 299
R VR A++ + G +G+ L + R ++ + A + +L+
Sbjct: 218 RIPTMDVRFFVTAVVIQRQTGGDLGEVLDKISHLIRQRFEIKGQVAALTGEGRLS 272
>gi|148655424|ref|YP_001275629.1| type II secretion system protein [Roseiflexus sp. RS-1]
gi|148567534|gb|ABQ89679.1| type II secretion system protein [Roseiflexus sp. RS-1]
Length = 327
Score = 95.3 bits (236), Expect = 1e-17, Method: Composition-based stats.
Identities = 43/320 (13%), Positives = 115/320 (35%), Gaps = 32/320 (10%)
Query: 10 DATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSAS 69
D T+L + ++I ++ + S + E+R+ A R Q+ +A
Sbjct: 6 DPTQLIAPVGIFLAILAVFAFLASRSASNPSYEERLTQFAGRR--------ADQQQRTAK 57
Query: 70 SRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLI 129
+LR D R L A + ++ +++L+ + +
Sbjct: 58 EQLREIDKVVAR----------GKRGSETARNLARADL--KLTVTEFYMIKLLAAGVGAV 105
Query: 130 LGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDL 189
+G + ++ ++ + I+ + P +++ ++R + D +++
Sbjct: 106 VGAF-------IGRASWEAQLLSGIVGFALFSFLPDLYVGYAAKQRVTKFNAQLGDTINM 158
Query: 190 LLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMD 249
L + SG S+ Q++ V+ + P + E + E+ + A +N R +
Sbjct: 159 LANSLRSGYSLLQSMELVSRE---APEPTASEYRRVVQEVGLGLRTEDALDNLLKRVPSE 215
Query: 250 CVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMI--IFFL 307
+ A+ G ++ L + R ++ E + +++ +I +
Sbjct: 216 DLDLLITAVKIQMESGGNLAQILDTIGHTIRERIRIKGEIAVLTAQGRISAYVITGLPIG 275
Query: 308 PVLILVIIGPAILSIIDTMK 327
+ + +I P ++ + +
Sbjct: 276 LAIFITVINPNYMAPMFSFG 295
>gi|153853655|ref|ZP_01995035.1| hypothetical protein DORLON_01026 [Dorea longicatena DSM 13814]
gi|149753810|gb|EDM63741.1| hypothetical protein DORLON_01026 [Dorea longicatena DSM 13814]
Length = 376
Score = 95.3 bits (236), Expect = 1e-17, Method: Composition-based stats.
Identities = 33/157 (21%), Positives = 66/157 (42%), Gaps = 6/157 (3%)
Query: 152 AVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAE-- 209
++IG + + I ++R+ + +P+ + L + + +G+++ +A R++ E
Sbjct: 199 MGMMIGILLYALQKQNIRKAEEERKKQMIEDYPEVISKLTLYLGAGMTVKKAWRKITEGY 258
Query: 210 ---DIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGT 266
+ EEM T E+ +ENF R + L Q+ R GT
Sbjct: 259 MKEKEDENERYVYEEMRQTCHEMDSGVTEAEGYENFGRRCDLQIYIRLGALLSQNLRKGT 318
Query: 267 -SIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPM 302
+ + L++ + ER A++ G KL +PM
Sbjct: 319 KGLSELLKLESIQAFEERKARAKRLGEEAGTKLLLPM 355
>gi|226310158|ref|YP_002770052.1| hypothetical protein BBR47_05710 [Brevibacillus brevis NBRC 100599]
gi|226093106|dbj|BAH41548.1| conserved hypothetical membrane protein [Brevibacillus brevis NBRC
100599]
Length = 306
Score = 95.3 bits (236), Expect = 1e-17, Method: Composition-based stats.
Identities = 42/263 (15%), Positives = 97/263 (36%), Gaps = 24/263 (9%)
Query: 56 RKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNI 115
R ++ +K ++ + + + K + + I KL A F + +
Sbjct: 23 RAKKTEWKKKAEEWFEVKGKRKSVVIVWGDKFDQTPYA--KEIQKKLIKANF--ALAPSE 78
Query: 116 LLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKR 175
+ +I + + ++ + +PF +GAV++ + +V K
Sbjct: 79 FYGI-----LIVGTMVLAFLLSNVVNISFPFNFMIGAVVM-----YLIQNVLFFVRRNKY 128
Query: 176 QSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNR 235
Q + + LL + +G+++ Q + VA+++ + P +E EL +
Sbjct: 129 QERLNEQLSEVCRLLANSLRAGLTLSQGISLVAKEM---NYPAGDEFSRMARELQLGVSF 185
Query: 236 QVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLG 295
A + R R T L+ R G ++ L+ + R++ E K +
Sbjct: 186 DRALSDMEKRIPTREFRIFTATLLIQRRAGGNLSQVLQEMAETLEDRRIVNQEIKTMTAE 245
Query: 296 ---PKLTVPMIIFFLPVLILVII 315
+ VP +PV +++++
Sbjct: 246 QRYVSILVP----IMPVALVLMM 264
>gi|32471257|ref|NP_864250.1| hypothetical protein RB1148 [Rhodopirellula baltica SH 1]
gi|32396959|emb|CAD71929.1| conserved hypothetical protein [Rhodopirellula baltica SH 1]
Length = 314
Score = 95.3 bits (236), Expect = 1e-17, Method: Composition-based stats.
Identities = 47/220 (21%), Positives = 85/220 (38%), Gaps = 20/220 (9%)
Query: 96 ENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVIL 155
++ L AG ++++ V LV+ + +LG W + I
Sbjct: 75 SSLTTLLNQAGI--KWTVKQWWVTVLVIATVGTLLGGYW--------------DIRLGIA 118
Query: 156 IGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQS 215
G +G P ++ R + R P+ L+ V SG ++ AL+ +AED
Sbjct: 119 TGLIGLLLPFAFLFAKQNARNQQLSRQLPEVFQLISRAVRSGQTVTSALQMIAEDCPS-- 176
Query: 216 VPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVL 275
P+ EE L + R++AF R Q+ +R AL+ +R G + + L L
Sbjct: 177 -PIREEFALCYEQQELGMWRELAFRKLAERNQVMELRIFVVALLVQNRSGGDLVELLDNL 235
Query: 276 VSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVII 315
+ KA + ++ +++ LP + L I
Sbjct: 236 SKMVTKRLRLRDRIKALTAEGRMQA-LVLVVLPFVALGAI 274
>gi|254182576|ref|ZP_04889170.1| type II secretion system protein [Burkholderia pseudomallei 1655]
gi|184213111|gb|EDU10154.1| type II secretion system protein [Burkholderia pseudomallei 1655]
Length = 330
Score = 94.9 bits (235), Expect = 1e-17, Method: Composition-based stats.
Identities = 50/295 (16%), Positives = 112/295 (37%), Gaps = 29/295 (9%)
Query: 33 IPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAI 92
+ G +R+++ +R + S L+ R + F +L ++
Sbjct: 31 WWNARHGPAARRIEA------RIRAMSAGGQVQKERLSILKERMLNDAKPF-DRLLMRVP 83
Query: 93 LVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGA 152
V + + ++ +G +S+ L + L +P + L + A
Sbjct: 84 RV-QTLDLMIQQSGL--TWSVVKLAWISLAIPFAAFVALGF------------TPLPLWA 128
Query: 153 VILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIG 212
C P++++ +R ++R PDA D++ + +G + A+ V +
Sbjct: 129 TATASVAAVCLPTLFVLRCRTRRLRKLERQLPDACDMIARALRAGHAFSSAISMVGGEFA 188
Query: 213 GQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSL 272
P+ E +T E+++ + Q A N R + +R A++ G ++ + L
Sbjct: 189 E---PMGGEFRITFDEINYGVSLQEALLNLATRVPVSDLRYFVIAVLIQRETGGNLAELL 245
Query: 273 RVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP---VLILVIIGPAILSIID 324
+ R + + + S KL+ +I+ LP +L I+ P +S++
Sbjct: 246 DGIAQLIRERFKLFDKIRVLSAEGKLSA-LILTLLPFATAALLSIMNPDFISVLW 299
>gi|209546475|ref|YP_002278393.1| type II secretion system protein [Rhizobium leguminosarum bv.
trifolii WSM2304]
gi|209537719|gb|ACI57653.1| type II secretion system protein [Rhizobium leguminosarum bv.
trifolii WSM2304]
Length = 317
Score = 94.9 bits (235), Expect = 1e-17, Method: Composition-based stats.
Identities = 49/298 (16%), Positives = 107/298 (35%), Gaps = 29/298 (9%)
Query: 15 AVAITTAVSIFSLIYAVVIPSLGSG-ELEKRMKSVAVEREILRKQQITSLQKDSASSRLR 73
+ ++F+ V L + +R ++V +L S R
Sbjct: 1 MTLLLLYAAVFTAALVAVEAILRGYFKTSERHRAVNHRLSLL-----------EVSDDHR 49
Query: 74 TRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGII 133
S L+ + + V + ++ +G + R + F I G +
Sbjct: 50 KTYSDMLKERGAATSWRQTPVMQRLLRFYAQSGIK-------FDARRFAL---FAIAGAL 99
Query: 134 WIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLIC 193
+ + L R+ +L + P++ + +R + P+ALD+
Sbjct: 100 LTWLVVQFLVPSTLFRIPVFLL---ICLLVPALVVWRARARRMRKFELKLPEALDVANRS 156
Query: 194 VESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRN 253
+ +G + A+ VA ++ P+ E L EL++ A N +R ++ +
Sbjct: 157 LAAGHPLPAAISLVAREMPD---PIGTEFGLLSDELTYGVTLDDALVNLADRVGVEDLNL 213
Query: 254 ATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLI 311
+L G ++ + L+ L R +++A+ KA S ++T + + P L+
Sbjct: 214 LAISLSVQAGTGGNLVEILQNLSKTLRDRSMLKAKVKAISSEGRITA-IFMSMYPFLL 270
>gi|167842455|ref|ZP_02469139.1| Flp pilus assembly protein TadB [Burkholderia thailandensis MSMB43]
Length = 325
Score = 94.9 bits (235), Expect = 2e-17, Method: Composition-based stats.
Identities = 50/295 (16%), Positives = 113/295 (38%), Gaps = 29/295 (9%)
Query: 33 IPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAI 92
+ G +R+++ +R + S L+ R + F +L ++
Sbjct: 26 WWNARHGPAARRIEA------RIRAMSAGGQVQKERLSILKERMLNDAKPF-DRLLMRMP 78
Query: 93 LVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGA 152
V + + + +G +S+ L + L +P + L P L V A
Sbjct: 79 RV-QTLDLLIEQSGL--TWSVVKLAWISLAIPFAAFVA----------LSFAPLPLWVAA 125
Query: 153 VILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIG 212
V + + P++++ + +R ++R PD D + + +G + A+ V +
Sbjct: 126 VASVATIC--LPTLFVLHCRTRRLRKLERQLPDTCDTIARALRAGHAFSSAISMVGGEFA 183
Query: 213 GQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSL 272
P+ E +T E+++ Q A N R + +R A++ G ++ + L
Sbjct: 184 E---PMGGEFRITFDEINYGVPLQEALLNLATRVPVPDLRYFVIAVLIQRETGGNLAELL 240
Query: 273 RVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP---VLILVIIGPAILSIID 324
+ R + + + S KL+ +I+ LP +L ++ P ++++
Sbjct: 241 DGIALLIRERFKLFDKVRVLSAEGKLSA-LILTLLPFGTAGLLSVMNPDFIAVLW 294
>gi|103488239|ref|YP_617800.1| type II secretion system protein [Sphingopyxis alaskensis RB2256]
gi|98978316|gb|ABF54467.1| type II secretion system protein [Sphingopyxis alaskensis RB2256]
Length = 333
Score = 94.9 bits (235), Expect = 2e-17, Method: Composition-based stats.
Identities = 47/259 (18%), Positives = 106/259 (40%), Gaps = 8/259 (3%)
Query: 58 QQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILL 117
+++ ++ + + KSL ++ + A ++ L AA + L
Sbjct: 41 RRLRLIESGVDREAVTSLLRKSLPRRLEGVPPWAASTLQSFRRLLNAANIGMGELQLLGL 100
Query: 118 VVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQS 177
++ V ++F+IL + G+ + +++ V F P + I+ L +R+
Sbjct: 101 MLVGAVTVMFIILVAAGLTGFP----ITLGVVQLGLVIGIVVAFLLPWMVITRLADRRRR 156
Query: 178 SIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQV 237
+++ +P ALD+ + + SG I AL+ + ++ P+ E + E++F + +
Sbjct: 157 RMEQQFPIALDIFVRGLRSGHPIPAALQLLTVEMED---PIGTEFGIVTDEIAFGLDLRE 213
Query: 238 AFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPK 297
A R + + ++ G ++ + L L R M + +A S +
Sbjct: 214 ALARMAERWGLPDMHMFVVSVSVQMETGGNLAEILENLSKVIRDRASMFMKVRALSSEGR 273
Query: 298 LTVPMIIFFLPVLILVIIG 316
+T I+ LP+L V +
Sbjct: 274 MTAV-ILTALPILAFVGLF 291
>gi|309780756|ref|ZP_07675497.1| TadB protein [Ralstonia sp. 5_7_47FAA]
gi|308920438|gb|EFP66094.1| TadB protein [Ralstonia sp. 5_7_47FAA]
Length = 325
Score = 94.6 bits (234), Expect = 2e-17, Method: Composition-based stats.
Identities = 50/318 (15%), Positives = 122/318 (38%), Gaps = 25/318 (7%)
Query: 9 FDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSA 68
D + A++ +++ + AV + R S L+ +S+
Sbjct: 1 MDPLVIGFALSVFIAMMLAVLAVYLWWDSRHSSAARRFSH-----RLKMALASSVSHGGT 55
Query: 69 SSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFL 128
S L+ R L + + + +L +G ++S++ + L+VP +
Sbjct: 56 DSILKQRMLSESPEVAAMLG--RLPRIQTLDRRLLQSGL--DWSVSRFSALTLMVPAMIA 111
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
I+ + F +++ G P++++ + +R ++ P+A D
Sbjct: 112 IVFSL------------FDPPPMTLLVFVLAGASLPALYVMHRRTRRLLKLEAQLPEATD 159
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
L+ + +G S+ AL ++ P+ E+ + ++++F + AF +R +
Sbjct: 160 LISRALRAGHSLPAALEMAGTEL---PAPIGAELAIVFSQINFGVSMSDAFAGLTDRVPV 216
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP 308
D +R A++ G ++ + L + R + + + S +L I+ LP
Sbjct: 217 DDLRYLVIAILIQRESGGNLAEILDNVGKLIRKRLQLLDKVRVLSAEGRL-GGWILTLLP 275
Query: 309 VLILVIIGPAILSIIDTM 326
++ + I ++ T+
Sbjct: 276 PVMGLAIYLLNPELMSTL 293
>gi|56477521|ref|YP_159110.1| putative Flp pilus assembly protein [Aromatoleum aromaticum EbN1]
gi|56313564|emb|CAI08209.1| putative Flp pilus assembly protein [Aromatoleum aromaticum EbN1]
Length = 324
Score = 94.6 bits (234), Expect = 2e-17, Method: Composition-based stats.
Identities = 55/324 (16%), Positives = 118/324 (36%), Gaps = 39/324 (12%)
Query: 9 FDATELAVAITTAVSIFSLIYAVVIPSLGS-----GELEKRMKSVAVEREILRKQQITSL 63
D L A+ T +++ + + S L +R+ VA R +
Sbjct: 1 MDILTLLFALATFITVVLFLEGAYLWWASSHSADAKRLNRRLDEVASGVGSARPASLYKE 60
Query: 64 QKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRA-AGFRSEYSLNILLVVRLV 122
Q + S+ + L + ++V + L AG+
Sbjct: 61 QNAAGSA----AGDRLLAAVPHLHGINRLIVQSRLQLTLAQFAGW--------------- 101
Query: 123 VPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRA 182
+ LG F LL P L +G +++G P++++ + +
Sbjct: 102 -TVALAALG----FTLPLLLNRPLFLGLGFAVVLG----MLPTLYVMRARNQHMQRFELQ 152
Query: 183 WPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENF 242
P+ALDL+ + +G + A++ VAE++ P+ E + E+++ +Q A N
Sbjct: 153 LPEALDLMGRALRAGHAFPTAIKMVAEEMKD---PIGGEFRILFDEMNYGVPQQTAMLNL 209
Query: 243 YNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPM 302
+RT + A++ G ++ + L + R+ + E + S KL+ +
Sbjct: 210 ASRTDSTDLSYFVIAVLIQRDSGGNLAELLDNISKIVRARLKLYGEIRTLSAEGKLSAWI 269
Query: 303 IIFFLPVL--ILVIIGPAILSIID 324
+ ++ I+ P + ++
Sbjct: 270 LGCLPFATAALINIVNPGFMKVLW 293
>gi|317122044|ref|YP_004102047.1| type II secretion system F domain [Thermaerobacter marianensis DSM
12885]
gi|315592024|gb|ADU51320.1| Type II secretion system F domain [Thermaerobacter marianensis DSM
12885]
Length = 401
Score = 94.6 bits (234), Expect = 2e-17, Method: Composition-based stats.
Identities = 50/315 (15%), Positives = 106/315 (33%), Gaps = 26/315 (8%)
Query: 14 LAVAITTAVSIFSLIYAVVIPS--LGSGELEKRMKSVAVEREILRKQQITSLQKDSASSR 71
V + + + ++ + +R+++V R ++ + +
Sbjct: 72 WMVLLLVFAGSTYVAWGLLRAWEGWQGARVARRLEAV-HRHSRQRGLRLAPMLVMEEAQP 130
Query: 72 LRTRDSKSLRNFVKKLN--LKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLI 129
R V++ L+ + + KL A R + +
Sbjct: 131 GPREGRSWRRQLVEQAEARLRGAPWLDGVQRKLNRARLRWRA--------------VEFL 176
Query: 130 LGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDL 189
L+ R + G AP +++ ++R + PDAL L
Sbjct: 177 ALQAAAGVAGGLVGLALGGRWWLAVAGSVAGMLAPDAYVARRYRQRLQAFDAQLPDALTL 236
Query: 190 LLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMD 249
+ ++SG S QA VA ++ P++EE + E + A N +R
Sbjct: 237 MANALKSGYSFLQAADVVAREM---PAPIAEEFGWLVKETRVNIPLEDALANLLDRVPSP 293
Query: 250 CVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPV 309
+ A++ + G ++ L R ++ + + + +L+ I+ LPV
Sbjct: 294 DLDLVVTAVLIQKQVGGNLAGVLERTAETIRERVRLQGQIRTLTAQGRLSG-WIVGSLPV 352
Query: 310 LILVIIG---PAILS 321
+LV++ PA L
Sbjct: 353 ALLVLLSAMNPAYLQ 367
>gi|260428144|ref|ZP_05782123.1| type II secretion system protein [Citreicella sp. SE45]
gi|260422636|gb|EEX15887.1| type II secretion system protein [Citreicella sp. SE45]
Length = 321
Score = 94.6 bits (234), Expect = 2e-17, Method: Composition-based stats.
Identities = 56/300 (18%), Positives = 128/300 (42%), Gaps = 24/300 (8%)
Query: 17 AITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQI--TSLQKDSASSRLRT 74
++ + I+ LI+A V+ + L KS+++ + R+ ++ ++ ++ ++LR
Sbjct: 1 MLSAEIIIYGLIFAGVLVLVEGVYLVAFGKSISLNSRVNRRLEMLDKNVAREEVLAKLRK 60
Query: 75 RDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIW 134
+ L N + + L +IL D R++ + +L++ + + +
Sbjct: 61 EMDQHLEN--RGIPLYSILAD------------RAQKAALAFTPNQLILMMAG--VSVFA 104
Query: 135 IFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICV 194
FG E +R+ I +G G +W++ +KR S I+ PDA++L++ +
Sbjct: 105 FFGLTIGTEASLPVRIVMGIGMGVGGVF---MWVNGKARKRLSLIEEQLPDAVELMVRSL 161
Query: 195 ESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNA 254
G A+ V+ +I PL+ E + E ++ + + ++ R M +R
Sbjct: 162 RVGHPFSSAISVVSCEIKD---PLATEFGIIADESTYGRDIGESLKHMAERLDMQDLRFL 218
Query: 255 TQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVI 314
A+ + G ++ + L L R+ + KA + + + + F ++L+I
Sbjct: 219 AVAVTIQQQSGGNLAEILEGLAKVIRARFRLFRRVKAITAEAQWSGKFLSGFPVAVLLII 278
>gi|254441335|ref|ZP_05054828.1| Bacterial type II secretion system protein F domain [Octadecabacter
antarcticus 307]
gi|198251413|gb|EDY75728.1| Bacterial type II secretion system protein F domain [Octadecabacter
antarcticus 307]
Length = 322
Score = 94.6 bits (234), Expect = 2e-17, Method: Composition-based stats.
Identities = 39/193 (20%), Positives = 80/193 (41%), Gaps = 7/193 (3%)
Query: 123 VPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRA 182
+ ++ ++ + G E +R + +G G +W+ +KR S I+
Sbjct: 94 LMMLMVVTSGVAFMGLTIGTETSLPIRAAVAVAMGIGGVF---MWVDGKAKKRISMIEEQ 150
Query: 183 WPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENF 242
PDA++L++ + G A+ VA+++ PL EM + E ++ + + +
Sbjct: 151 LPDAVELMVRSLRVGHPFSSAVAIVAKEVPD---PLGTEMGVISDEAAYGRDMGESLKQM 207
Query: 243 YNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPM 302
+R M +R A+ G ++ + L L R+ + KA + K + M
Sbjct: 208 ADRMDMQDMRFLAVAVTIQATAGGNLAEILHGLSQVIRARFKLFRRVKAITAEAKWSG-M 266
Query: 303 IIFFLPVLILVII 315
+ P+ LV+I
Sbjct: 267 FLSVFPLGALVMI 279
>gi|327189774|gb|EGE56918.1| putative tadB pilus assembly protein [Rhizobium etli CNPAF512]
Length = 317
Score = 94.2 bits (233), Expect = 2e-17, Method: Composition-based stats.
Identities = 46/294 (15%), Positives = 108/294 (36%), Gaps = 29/294 (9%)
Query: 19 TTAVSIFSLIYAVVIPSLGSG-ELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDS 77
++F+ V + + +R ++V LR +++ + + L+ R
Sbjct: 5 LLYAAVFTAALVAVEAIMRGYFKTSERHRAVNHR---LRLLEVSDDHRKTYGDMLKER-- 59
Query: 78 KSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFG 137
+ ++ +L F ++ + R + F I G + +
Sbjct: 60 ----------GVARSWRQNPVMQRLLQ--FYAQSGIK-FDARRFAL---FTIAGALLTWL 103
Query: 138 YDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESG 197
+ L RV +L + P++ + +R + + P+ALD+ + +G
Sbjct: 104 VVQFLVPSNLFRVPVFLL---ICLLIPALVVWRARARRMKAFELKLPEALDVATRSLAAG 160
Query: 198 ISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQA 257
+ A+ V ++ P+ E L EL++ A N +R ++ + +
Sbjct: 161 HPLPAAIALVGREMPD---PIGTEFGLLTDELTYGVTLDDALVNLADRVGVEDLNLLAIS 217
Query: 258 LIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLI 311
L G ++ + L+ L R ++ A+ +A S ++T + + P L+
Sbjct: 218 LSVQAGTGGNLVEILQNLSKTLRDRTMLRAKVRAISSEGRITA-IFMSIYPFLL 270
>gi|296158516|ref|ZP_06841346.1| Type II secretion system F domain protein [Burkholderia sp. Ch1-1]
gi|295891084|gb|EFG70872.1| Type II secretion system F domain protein [Burkholderia sp. Ch1-1]
Length = 282
Score = 94.2 bits (233), Expect = 2e-17, Method: Composition-based stats.
Identities = 31/174 (17%), Positives = 76/174 (43%), Gaps = 3/174 (1%)
Query: 141 LLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISI 200
++ + + + + P ++ + +KR ++++ PDAL ++ + +G S
Sbjct: 69 VIVFLLSHSILFALAAVPIAMMLPKKYLKRMRKKRIEALEKQLPDALLMMSGALRAGASF 128
Query: 201 DQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQ 260
AL V + + P+S+E L + E+ + +A N R + + T A+
Sbjct: 129 PSALEAVVHE---TTPPISQEFDLLMREIRLGIDLDIAMRNVEKRIPIPDLLMMTAAVTI 185
Query: 261 SDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVI 314
+ G ++ ++L + R + ME + +A + ++ ++ L+LV+
Sbjct: 186 AREVGGNLAEALESVARTLREKLQMEGKIRALTSQGRMQGIVMTCLPLFLMLVL 239
>gi|149178504|ref|ZP_01857092.1| secretion system protein TadB [Planctomyces maris DSM 8797]
gi|148842619|gb|EDL56994.1| secretion system protein TadB [Planctomyces maris DSM 8797]
Length = 310
Score = 94.2 bits (233), Expect = 2e-17, Method: Composition-based stats.
Identities = 36/190 (18%), Positives = 78/190 (41%), Gaps = 6/190 (3%)
Query: 126 IFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPD 185
L++ G + L A ++ G + + + +KR +I+ P+
Sbjct: 85 FLLLIACGLAIGGSIFIYTNQPLAGIAGMIGGMIAVL---IILHYRRKKRMQTIQEELPE 141
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
+DLL +G S++QA+ V E+ G PLS E +L + ++ +R
Sbjct: 142 MIDLLARSTHAGASLEQAIAIVGEETKG---PLSFEFRRCARQLDMNLSVPAVMKSLSSR 198
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
Q+ ++ T L+ + G ++ +L + R + KA++ + + ++
Sbjct: 199 IQLIDLKILTSTLMLYRKTGGNLPANLERMADVVRDRINYRRQMKASTGAGRASALLMTV 258
Query: 306 FLPVLILVII 315
PV +V++
Sbjct: 259 VAPVAFVVLL 268
>gi|322384399|ref|ZP_08058085.1| hypothetical protein PL1_0931 [Paenibacillus larvae subsp. larvae
B-3650]
gi|321150757|gb|EFX44217.1| hypothetical protein PL1_0931 [Paenibacillus larvae subsp. larvae
B-3650]
Length = 223
Score = 94.2 bits (233), Expect = 2e-17, Method: Composition-based stats.
Identities = 37/217 (17%), Positives = 83/217 (38%), Gaps = 6/217 (2%)
Query: 108 RSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVW 167
+ ++ ++ + F++L + G + A I
Sbjct: 10 PRQQAIRTKYYAVEMLSLSFIVLAGFILLGLVSGEGPVLVIFGLAGAGITPALLF---RT 66
Query: 168 ISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAED-IGGQSVPLSEEMLLTI 226
+ ++K++ SI P+ L+ +++ V++G ++ + R +D PL E++
Sbjct: 67 LDQKLKKKKHSILIELPEFLNKIILLVDAGETVQASFIRCIDDRAEKPLSPLQAELIKCK 126
Query: 227 AELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGT-SIGDSLRVLVSETRSERLM 285
EL + + R M + T ++ + + G + +LR L + R
Sbjct: 127 RELLMNVSLNKSLGELTRRCSMQEISMFTTTVLLNYKRGGHDLTVALRNLSKDLWERRKA 186
Query: 286 EAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
+ KL PM + FL V+++V PA++ +
Sbjct: 187 VSRILGEEASSKLVFPMALIFLIVIVIV-AAPAMMMM 222
>gi|327539549|gb|EGF26159.1| type II secretion system protein [Rhodopirellula baltica WH47]
Length = 314
Score = 94.2 bits (233), Expect = 2e-17, Method: Composition-based stats.
Identities = 47/220 (21%), Positives = 85/220 (38%), Gaps = 20/220 (9%)
Query: 96 ENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVIL 155
++ L AG ++++ V LV+ + +LG W + I
Sbjct: 75 SSLTTLLNQAGI--KWTVKQWWVTVLVIATVGTLLGGYW--------------DIRLGIA 118
Query: 156 IGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQS 215
G +G P ++ R + R P+ L+ V SG ++ AL+ +AED
Sbjct: 119 TGLIGLLLPFAFLFAKQNARNQQLSRQLPEVFQLISRAVRSGQTVTSALQMIAEDCPS-- 176
Query: 216 VPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVL 275
P+ EE L + R++AF R Q+ +R AL+ +R G + + L L
Sbjct: 177 -PIREEFALCYEQQELGMWRELAFRKLAERNQVMELRIFVVALLVQNRSGGDLVELLDNL 235
Query: 276 VSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVII 315
+ KA + ++ +++ LP + L I
Sbjct: 236 SKMVTKRLRLRDRIKALTAEGRMQA-LVLVVLPFVALGAI 274
>gi|84516637|ref|ZP_01003996.1| putative Flp pilus assembly protein TadB [Loktanella vestfoldensis
SKA53]
gi|84509673|gb|EAQ06131.1| putative Flp pilus assembly protein TadB [Loktanella vestfoldensis
SKA53]
Length = 320
Score = 94.2 bits (233), Expect = 3e-17, Method: Composition-based stats.
Identities = 43/283 (15%), Positives = 104/283 (36%), Gaps = 28/283 (9%)
Query: 15 AVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRT 74
+ I V++ +L+ + G KS++++ ++ R+ ++ L K ++
Sbjct: 6 IIYILIFVAVLALVQGAYLVIFG--------KSISMDGKVNRRLEM--LDKGGNREQVLD 55
Query: 75 RDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIW 134
+ K + +K ++ + K + ++++ + ++ +
Sbjct: 56 QLRKEMTQHMKSQSIPIYSLLATKAQK----------ANIAFSPTQIMM--VMAVVSVAA 103
Query: 135 IFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICV 194
+ +R+ +L+G G WIS +R + I PDA+DL++ +
Sbjct: 104 FLMLTLFTQVAPPVRILISVLMGVGGVYL---WISRKATQRINLISEQLPDAVDLMVRSL 160
Query: 195 ESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNA 254
G A+ A+++ PL E+ + E ++ + + R +R
Sbjct: 161 RVGHPFSSAINIAAKEVPD---PLGTEIGIIADETAYGRDMGETLKAMAERLDNQDLRFL 217
Query: 255 TQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPK 297
A+ G ++ + L L R+ + KA + K
Sbjct: 218 AVAVTIQQSSGGNLAEILDGLSKVIRARFRLFRRVKAITAEAK 260
>gi|310822672|ref|YP_003955030.1| type II secretion system protein f domain-containing protein
[Stigmatella aurantiaca DW4/3-1]
gi|309395744|gb|ADO73203.1| type II secretion system protein F domain protein [Stigmatella
aurantiaca DW4/3-1]
Length = 281
Score = 94.2 bits (233), Expect = 3e-17, Method: Composition-based stats.
Identities = 36/203 (17%), Positives = 79/203 (38%), Gaps = 14/203 (6%)
Query: 127 FLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDA 186
+LGI+ ++ ++ + GF P + + ++R DA
Sbjct: 64 MCLLGILAYIVFNPIM----------CVGATIFGFFLPMLLVKYYRKRRIKKFNVQLVDA 113
Query: 187 LDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRT 246
L + ++G++ QA+ VA + PLS+E L + E+ + A N R
Sbjct: 114 LQAMANAFKAGLTFPQAIEHVARE---ALPPLSQEFGLFVKEVKLGVPLEEALINMGKRV 170
Query: 247 QMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFF 306
D + + + + G ++ + + R +E + A + KL I+
Sbjct: 171 GSDDLELVVVSTNIARQLGGNMAEMFETISMVIRERFRLEGKIDALTSQGKLQG-WIVAS 229
Query: 307 LPVLILVIIGPAILSIIDTMKDH 329
+P ++ +++ +++ M DH
Sbjct: 230 MPAVLGMVLNSMRPDLMEPMMDH 252
>gi|251795274|ref|YP_003010005.1| type II secretion system protein [Paenibacillus sp. JDR-2]
gi|247542900|gb|ACS99918.1| type II secretion system protein [Paenibacillus sp. JDR-2]
Length = 282
Score = 94.2 bits (233), Expect = 3e-17, Method: Composition-based stats.
Identities = 39/160 (24%), Positives = 67/160 (41%), Gaps = 2/160 (1%)
Query: 164 PSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEML 223
P + LV++R+ +I P+AL L++ V +G + QA R E PL +E
Sbjct: 123 PFMEAGRLVERRKQAIVSELPEALSKLMLLVGAGEPVLQAFSRCLEGKDPAVQPLYKEWD 182
Query: 224 LTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTS-IGDSLRVLVSETRSE 282
+ L + A E F + V T ++ + R G +LR + +
Sbjct: 183 RVVIALRNGESFSTALERFNRSCAVQEVSIFTTVILLNYRRGGDQFVLALREISYSLWEK 242
Query: 283 RLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
R A + KL P++ L VL++ + PA+L +
Sbjct: 243 RKAVARSRGEEASSKLVFPLV-GILLVLMVFVAAPAMLLM 281
>gi|323702117|ref|ZP_08113785.1| Type II secretion system F domain [Desulfotomaculum nigrificans DSM
574]
gi|323532999|gb|EGB22870.1| Type II secretion system F domain [Desulfotomaculum nigrificans DSM
574]
Length = 323
Score = 93.8 bits (232), Expect = 3e-17, Method: Composition-based stats.
Identities = 34/177 (19%), Positives = 75/177 (42%), Gaps = 5/177 (2%)
Query: 146 FQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALR 205
L +++G G P + + QKR + DAL ++ + SG S QA+
Sbjct: 115 LTLNATISLIVGICGLIIPCLILRMARQKRLAKFNAQIGDALVIMANSLRSGFSFLQAMD 174
Query: 206 RVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYG 265
V +++ P+S E E+S + A +N R + D + A++ + G
Sbjct: 175 MVRKELPN---PISREFGRAFQEMSLGTPTEEALQNMAQRVKSDDLDLVITAVLIQRQVG 231
Query: 266 TSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVL--ILVIIGPAIL 320
++ + L + R ++ + ++ + +++ +I F L ++++I P +
Sbjct: 232 GNLAEVLDNIADTIRERVRIKGQIRSITAQGRISGMVIGFLPFALAALMLVISPQYI 288
>gi|88856328|ref|ZP_01130987.1| hypothetical protein A20C1_00270 [marine actinobacterium PHSC20C1]
gi|88814412|gb|EAR24275.1| hypothetical protein A20C1_00270 [marine actinobacterium PHSC20C1]
Length = 301
Score = 93.8 bits (232), Expect = 3e-17, Method: Composition-based stats.
Identities = 42/208 (20%), Positives = 81/208 (38%), Gaps = 5/208 (2%)
Query: 96 ENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVIL 155
E I +LR AG SE S +L+ + +LG+++ + P + V++
Sbjct: 87 ELIARRLRQAG--SELSTEAYRSQQLLAVLAGAMLGVVFDIAVANQQQVPLVAQTVLVVV 144
Query: 156 IGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQS 215
G VG A + + R + P L+ L + + +G I A+RRV++ GG
Sbjct: 145 GGVVGITARDYLLQRAARARIRRLTAELPVVLEFLALSLSAGEGILDAVRRVSQVSGG-- 202
Query: 216 VPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVL 275
LS E+ +A ++ ++ ++ + GT + + L+
Sbjct: 203 -ELSNELARVVASVNTGLPFGETLGALARELELPPFNRCVDQILGALDRGTPLSEVLQAQ 261
Query: 276 VSETRSERLMEAEKKAASLGPKLTVPMI 303
+ R E E + A + P++
Sbjct: 262 AQDAREESKRELLELAGKKEVAMLFPLV 289
>gi|218663020|ref|ZP_03518950.1| putative tadB pilus assembly protein [Rhizobium etli IE4771]
Length = 317
Score = 93.8 bits (232), Expect = 3e-17, Method: Composition-based stats.
Identities = 35/178 (19%), Positives = 74/178 (41%), Gaps = 6/178 (3%)
Query: 126 IFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPD 185
+F I G + + + L LR+ +L +G P+V++ +R + P+
Sbjct: 92 LFAIAGALLTWLVVQFLVPSTLLRIPVFLL---IGLLIPAVFVWRARARRMKKFELKLPE 148
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
ALD+ + +G + A+ V ++ P+ E L EL++ A N +R
Sbjct: 149 ALDVANRSLAAGHPLPAAISLVGREMPD---PIGTEFGLLSDELTYGVTLDDALVNLADR 205
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMI 303
++ + +L G ++ + L+ L R ++ A+ +A S ++T +
Sbjct: 206 VGVEDLDLLAISLSVQAGTGGNLVEILQNLSKTLRDRTMLRAKVRAISSEGRITAIFM 263
>gi|294676063|ref|YP_003576678.1| type II secretion system protein [Rhodobacter capsulatus SB 1003]
gi|294474883|gb|ADE84271.1| type II secretion system protein [Rhodobacter capsulatus SB 1003]
Length = 322
Score = 93.8 bits (232), Expect = 3e-17, Method: Composition-based stats.
Identities = 47/280 (16%), Positives = 93/280 (33%), Gaps = 30/280 (10%)
Query: 19 TTAVSIFSLIYAVVIPSLGSG-ELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDS 77
V++ ++ + + G L R V E+L K Q +
Sbjct: 12 LIFVAVLLIVEGIYLLVFGKSISLNNR---VNRRLEMLDKGQRREQVLEQLRKEATQHSK 68
Query: 78 KSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFG 137
F L KA + + + + + +++ I G
Sbjct: 69 AQGIPFYSLLASKAQKAN--------------------IAFSPMALIGVMVLVSFIAFLG 108
Query: 138 YDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESG 197
+ +R + +G G W++ KR + PDA++L++ + G
Sbjct: 109 LTLGTQASTPVRAVLAVGMGVGGVY---FWVNGKAGKRLKLAEDQLPDAVELMVRSLRVG 165
Query: 198 ISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQA 257
+ A++ VA++I PL E + E ++ N + + R M +R A
Sbjct: 166 HPLASAIQAVAKEIPD---PLGTEFGIIADEAAYGRNVVDSLRDLAERLDMQDLRFLAVA 222
Query: 258 LIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPK 297
+ G ++ + L L RS + +A + PK
Sbjct: 223 VSIQQTSGGNLAEVLEGLAKVIRSRFRLFRRVRAITAEPK 262
>gi|170700845|ref|ZP_02891834.1| type II secretion system protein [Burkholderia ambifaria IOP40-10]
gi|170134253|gb|EDT02592.1| type II secretion system protein [Burkholderia ambifaria IOP40-10]
Length = 325
Score = 93.8 bits (232), Expect = 3e-17, Method: Composition-based stats.
Identities = 55/300 (18%), Positives = 111/300 (37%), Gaps = 25/300 (8%)
Query: 9 FDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSA 68
D+ I T V++ I V R LR +
Sbjct: 1 MDSIYYGFVILTFVAVVLAIEGVYQWWNARHGAAARR-----IESRLRAMSAGGSVQQER 55
Query: 69 SSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFL 128
S L+ R + F +L L + + + L+ +G ++++ L+V+ V+ +
Sbjct: 56 LSILKKRMLDESKPF-DRL-LMRVPRIQALDLVLQQSGL--DWTVAKLVVISAVLAVTAA 111
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
++ + L + V+ I + C P++++ +R ++R PD D
Sbjct: 112 LVLTV------------SPLPLITVLPIALLTACLPAMYVMRHRNRRMLKLERQLPDICD 159
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
++ + SG S AL V E+ P+ E +T E+++ + A N R
Sbjct: 160 MIARALRSGHSFSSALGMVGEEF---PEPMGGEFRITFDEINYGVSLHDALVNLATRVPA 216
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP 308
+R A++ G ++ + L + S R + + + S +L+ I+ LP
Sbjct: 217 HDLRYFVIAVLIQRETGGNLAELLDSIASLVRERFKLFDKVRVLSAEGRLSA-WILGLLP 275
>gi|219850072|ref|YP_002464505.1| type II secretion system protein [Chloroflexus aggregans DSM 9485]
gi|219544331|gb|ACL26069.1| type II secretion system protein [Chloroflexus aggregans DSM 9485]
Length = 332
Score = 93.8 bits (232), Expect = 3e-17, Method: Composition-based stats.
Identities = 31/234 (13%), Positives = 75/234 (32%), Gaps = 14/234 (5%)
Query: 96 ENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVIL 155
+I N+L A + ++ ++L ++ + G L
Sbjct: 79 SSIKNELSRAAL--KLTVAEFFGLKLGAALLGGVFGAFLGRASPYAALALGLLCAIIFA- 135
Query: 156 IGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQS 215
P +++ +R + D + ++ + G S Q L VA +
Sbjct: 136 ------FLPDIYVKVRAAQRVKAFNNQLGDVITMMANALRGGYSFLQTLDMVAREAPD-- 187
Query: 216 VPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVL 275
P S E + E+ + + A +N R D + A+ G ++ L +
Sbjct: 188 -PASTEFRRVVQEVGLGRSTEEALQNLLRRVPSDDLDLLVTAVSIQMEVGGNLAQVLDTI 246
Query: 276 VSETRSERLMEAEKKAASLGPKLT--VPMIIFFLPVLILVIIGPAILSIIDTMK 327
R ++ E + +++ + + + ++ P ++ + T
Sbjct: 247 GHTIRERVRIKGEISTLTAQGRISSWIITGLPIGLAAFITVVNPDYMAPLFTFG 300
>gi|134299963|ref|YP_001113459.1| type II secretion system protein [Desulfotomaculum reducens MI-1]
gi|134052663|gb|ABO50634.1| type II secretion system protein [Desulfotomaculum reducens MI-1]
Length = 323
Score = 93.8 bits (232), Expect = 3e-17, Method: Composition-based stats.
Identities = 39/197 (19%), Positives = 84/197 (42%), Gaps = 8/197 (4%)
Query: 127 FLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDA 186
F++L ++ FG V+ G +G P ++I QKR + DA
Sbjct: 97 FIVLLLLTGFGCSLFFTLLTLNLAFGVV-AGLLGLIVPFLFIRIKRQKRLAKFNSQISDA 155
Query: 187 LDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRT 246
L ++ + SG S QA+ V +++ P+S+E T E++ + A EN R
Sbjct: 156 LVIMSNSLRSGFSFLQAMDMVRKELPN---PISKEFGRTFQEMNLGTQAEEALENMAQRV 212
Query: 247 QMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFF 306
+ D + A++ + G ++ + + + R ++ + + + +++ +I
Sbjct: 213 KSDDLDLLITAVLIQRQVGGNLAEVMDNIADTIRERVRVKGQIRTLTAQGRISG-FVIGL 271
Query: 307 LP---VLILVIIGPAIL 320
LP +++ I P+ +
Sbjct: 272 LPFGLTTVMITISPSYI 288
>gi|56697923|ref|YP_168294.1| TadC family type II/IV secretion system protein [Ruegeria pomeroyi
DSS-3]
gi|56679660|gb|AAV96326.1| type II/IV secretion system protein, TadC subfamily [Ruegeria
pomeroyi DSS-3]
Length = 322
Score = 93.8 bits (232), Expect = 3e-17, Method: Composition-based stats.
Identities = 48/274 (17%), Positives = 109/274 (39%), Gaps = 20/274 (7%)
Query: 24 IFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNF 83
I+ LI+ V+ + L KS+++ + R+ ++ L K + ++ + K ++
Sbjct: 9 IYGLIFVGVLVLVEGLYLVAFGKSISLNSRVNRRLEM--LDKGTGREQVLEQLRKEMQQH 66
Query: 84 VKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLE 143
+K ++ + K + +L++ I +L I G +
Sbjct: 67 MKSKSIPLYSLLAEKAQK----------AAIAFTPRQLIM--IMFLLAGIAFVGLSIGTQ 114
Query: 144 YPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQA 203
+LR + IG W++ +KR S I+ PD+++L++ + G + A
Sbjct: 115 TEVKLRAAISVAIGIAAVYL---WVNQKAKKRLSLIEEQLPDSVELMVRSLRVGHPLVSA 171
Query: 204 LRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDR 263
++ VA++ P++ E + E ++ A + R M +R + A+ +
Sbjct: 172 IQIVAKESED---PIATEFGIIADEAAYGREVGEALKEMAERLDMQDLRFLSVAVTIQQQ 228
Query: 264 YGTSIGDSLRVLVSETRSERLMEAEKKAASLGPK 297
G ++ + L L R+ + KA + +
Sbjct: 229 SGGNLAEVLAGLAKVIRARFRLFRRVKAITAEAQ 262
>gi|227819313|ref|YP_002823284.1| pilus assembly protein TadB [Sinorhizobium fredii NGR234]
gi|227338312|gb|ACP22531.1| pilus assembly protein TadB [Sinorhizobium fredii NGR234]
Length = 317
Score = 93.8 bits (232), Expect = 3e-17, Method: Composition-based stats.
Identities = 36/188 (19%), Positives = 76/188 (40%), Gaps = 3/188 (1%)
Query: 127 FLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDA 186
F + GI G ++++ + + + L + P V I R P+A
Sbjct: 90 FSLFGIAGAIGVWLVVQFLVPVNLVRIPLFLAICLLIPVVIIWRSRAVRIRKFAEKLPEA 149
Query: 187 LDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRT 246
LD+ + +G + A+ VA ++ P+ E L EL++ A N +R
Sbjct: 150 LDVANRSLAAGHPLPAAISLVAREMPD---PIGTEFGLLSDELTYGVTLDDALMNLNDRV 206
Query: 247 QMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFF 306
++ + +L G ++ + L+ L R +++A+ K+ S ++T + +
Sbjct: 207 GVEDLNLLAISLSVQAGTGGNLVEILQNLSKTLRDRFMLKAKVKSISAEGRITAIFMSLY 266
Query: 307 LPVLILVI 314
+L +I
Sbjct: 267 PFLLFGMI 274
>gi|325678255|ref|ZP_08157883.1| type II secretion system protein F domain protein [Ruminococcus
albus 8]
gi|324110018|gb|EGC04206.1| type II secretion system protein F domain protein [Ruminococcus
albus 8]
Length = 290
Score = 93.8 bits (232), Expect = 4e-17, Method: Composition-based stats.
Identities = 36/224 (16%), Positives = 86/224 (38%), Gaps = 7/224 (3%)
Query: 100 NKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYV 159
G R +L + ++ L+ ++++ E + + V
Sbjct: 71 QACILFGRRYADFYVRVLYAQTYTYVLLLVYSMLFLACVMGGSEGALFVLLAVVSGAAIY 130
Query: 160 GFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLS 219
+ S + ++K + R +P+A+ + + V G+ + +A ++VA PL
Sbjct: 131 KYYLNSF--GSKIEKMNETYMRDFPNAVSTIALLVNGGMFLREAWKQVAI---SSDEPLY 185
Query: 220 EEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRY-GTSIGDSLRVLVSE 278
+M + +++ + A F NR +R + + Q+ GT + D+L
Sbjct: 186 VQMRGVVDDMNNGVSEIDALFRFANRCSTKEIRKFSTTITQAIESDGTHLADTLIKQADL 245
Query: 279 TRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
+E+ ++ KL P I ++++I+ P + ++
Sbjct: 246 LLNEKKQMVLQQGEKASNKLMFP-IGLIFIGVLVMIMVPILSNM 288
>gi|240143493|ref|ZP_04742094.1| conserved hypothetical protein [Roseburia intestinalis L1-82]
gi|257204527|gb|EEV02812.1| conserved hypothetical protein [Roseburia intestinalis L1-82]
gi|291537188|emb|CBL10300.1| Bacterial type II secretion system protein F domain [Roseburia
intestinalis M50/1]
gi|291540422|emb|CBL13533.1| Bacterial type II secretion system protein F domain [Roseburia
intestinalis XB6B4]
Length = 423
Score = 93.8 bits (232), Expect = 4e-17, Method: Composition-based stats.
Identities = 35/152 (23%), Positives = 66/152 (43%), Gaps = 9/152 (5%)
Query: 179 IKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQS-------VPLSEEMLLTIAELSF 231
++ + D + L++ + +G+++ +A R+ E+ + + EEM T E+
Sbjct: 271 LELQYADMVSNLVLLLGAGMTVSKAWNRLTENYMNERQKRTICRKEVYEEMQRTSFEIKN 330
Query: 232 LPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGT-SIGDSLRVLVSETRSERLMEAEKK 290
+ A+E F R R L Q+ R G+ + L + ER A K
Sbjct: 331 GMGEERAYERFGERCGGYRYRKFGNLLAQNLRKGSRGLTRLLEQEAEDAFEERKSMARKL 390
Query: 291 AASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
G K+ PMI+ L ++L++ PA+ S+
Sbjct: 391 GEEAGTKMLFPMIL-MLGAVMLILAFPAMRSM 421
>gi|159901126|ref|YP_001547373.1| type II secretion system protein [Herpetosiphon aurantiacus ATCC
23779]
gi|159894165|gb|ABX07245.1| type II secretion system protein [Herpetosiphon aurantiacus ATCC
23779]
Length = 329
Score = 93.8 bits (232), Expect = 4e-17, Method: Composition-based stats.
Identities = 48/310 (15%), Positives = 111/310 (35%), Gaps = 30/310 (9%)
Query: 8 LFDATELAVAITTAVSIFSLIYAVV--IPSLGSGELEKRMKSVAVEREILRKQQITSLQK 65
+ + + + A+ +F+ + + S ++ R+ + A + +
Sbjct: 1 MANLPPWTIPLIIALVLFAAGAIIFRKLKETKSNSVDGRLATFAER------NRSQTDSN 54
Query: 66 DSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPI 125
+ S L +R + K +L L ++ + ++ ++ + I
Sbjct: 55 ERGMSALASRVDSMVNRGQKGSDLARDLAQADL-----------KLTVTEFIMFKFGSVI 103
Query: 126 IFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPD 185
+F + G+ L F V ++ +GF P +S R + D
Sbjct: 104 LFALFGVF-------LGRANFLAVVAGGVVGAIIGFIVPDKVVSFKQGSRLKAFNNQLGD 156
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
+ LL + SG S+ Q++ V+ + P+S E + E+ + + N R
Sbjct: 157 TVGLLANSLRSGYSLLQSMDLVSRE---APPPISVEFRRVVQEVGLGLSLEDGMNNLLRR 213
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
D + A+ G ++ + L + R ++ + + + + + ++
Sbjct: 214 VPSDDLDLMVSAINIQAEVGGNLAEILDTIAHTIRERVRIKGQIRVLTSQARYSG-YVVT 272
Query: 306 FLPVLILVII 315
FLP+ I VII
Sbjct: 273 FLPISIAVII 282
>gi|144897190|emb|CAM74054.1| pilus assembly protein TadB [Magnetospirillum gryphiswaldense
MSR-1]
Length = 279
Score = 93.4 bits (231), Expect = 4e-17, Method: Composition-based stats.
Identities = 45/232 (19%), Positives = 95/232 (40%), Gaps = 20/232 (8%)
Query: 97 NIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILI 156
+ +L AG R + VRL + + I ++W+ + +L
Sbjct: 35 QMREQLMRAGIRMD--------VRLWLGLNVAIAVLVWLVALGLKAP-----PLLGPLLA 81
Query: 157 GYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSV 216
+GF P + + L ++R + + DALD+++ + SG+ + + + + ++
Sbjct: 82 ASLGFGLPRLLVGWLGKRRIARFTTLFADALDIVVRGLRSGLPLGECMAIIGREV---PE 138
Query: 217 PLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLV 276
PL E L + + + + RT + L + G ++ ++L L
Sbjct: 139 PLGPEFRLVMEGQKLGLSLEESLARAVERTPTADFKYFAIVLGIQQQTGGNLAETLAKLS 198
Query: 277 SETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVII---GPAILSIIDT 325
R+ + M + KA S + MII LPV++ +++ GP + I+ +
Sbjct: 199 EVLRARKRMRDKIKAFSSEATASA-MIIGSLPVVVALLLTAVGPDYIGILFS 249
>gi|299532600|ref|ZP_07045989.1| type II secretion system protein [Comamonas testosteroni S44]
gi|298719403|gb|EFI60371.1| type II secretion system protein [Comamonas testosteroni S44]
Length = 329
Score = 93.4 bits (231), Expect = 4e-17, Method: Composition-based stats.
Identities = 49/286 (17%), Positives = 116/286 (40%), Gaps = 22/286 (7%)
Query: 43 KRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKL 102
K+ KS +R R + +++ +S ++L + S ++++ L+ + + +
Sbjct: 33 KQYKSPEAKRLERRLRALSAADDNSNPTKLVKERTLSDMPRMQRV-LQTMPRAHQLDRFI 91
Query: 103 RAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFC 162
+G L + L+LG +F L + + +L+G
Sbjct: 92 VQSG--------------LDWTVSGLLLGSATLFALGMLTTIMLRQPMELGVLLGLALAS 137
Query: 163 APSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEM 222
P +++ +R ++R P+ALDL+ + +G + +L+ E++ P++ E
Sbjct: 138 FPWLFLQRKRLQRLKRMERQLPEALDLIARALRAGHAFSASLQMAGEELTE---PIAGEF 194
Query: 223 LLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSE 282
L E+++ + A N R + +R A++ G ++ + L L R
Sbjct: 195 RLVHDEINYGTSLHQALTNLGERVPITDLRYFIVAVLIQRESGGNLTEMLSNLSRLIRER 254
Query: 283 RLMEAEKKAASLGPKLTVPMIIFFLP---VLILVIIGPAILSIIDT 325
+ A+ + S +++ I+ +P +L ++ P + + T
Sbjct: 255 LKLHAKVRVLSADGRMSA-WILGLMPFGLAALLNLMNPEFMHPLWT 299
>gi|328953759|ref|YP_004371093.1| Type II secretion system F domain protein [Desulfobacca acetoxidans
DSM 11109]
gi|328454083|gb|AEB09912.1| Type II secretion system F domain protein [Desulfobacca acetoxidans
DSM 11109]
Length = 339
Score = 93.4 bits (231), Expect = 4e-17, Method: Composition-based stats.
Identities = 45/258 (17%), Positives = 95/258 (36%), Gaps = 23/258 (8%)
Query: 75 RDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIW 134
R S+S ++ ++L L + L G + S LV + V F + ++
Sbjct: 45 RRSQSEKHIQQRLKFIEGLERNSSAESLIKEGMLAPESRWKRLVAK--VGRFFNLDELLL 102
Query: 135 IFGYDKLLEYPFQLRVGAVILIGYVGFC-----------------APSVWISNLVQKRQS 177
+ A + G GF P+V++ + R
Sbjct: 103 QADISWKASTVLGSSILAGLGAGAYGFLQSGPLGGLGGLFLVGYLLPNVFLHMKKKYRLK 162
Query: 178 SIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQV 237
++ P+AL L+ +++G S ++ VA+++ P+ E T E ++ +
Sbjct: 163 KFEKQLPEALGLMARSLKAGHSFPSTMQLVADEMPN---PIGIEFFKTFKEFNYGLDMSS 219
Query: 238 AFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPK 297
A N R + ++ A+ G ++ + L + S R + KA + +
Sbjct: 220 ALANLQKRIDLQDLKFFVTAINIQRETGGNLVEILEKIASLIRDRFKLVNHIKAITSEGR 279
Query: 298 LTVPMIIFFLPVLILVII 315
+ +I+ LP + +I+
Sbjct: 280 FSG-LILTCLPPGMAIIL 296
>gi|239908017|ref|YP_002954758.1| hypothetical membrane protein [Desulfovibrio magneticus RS-1]
gi|239797883|dbj|BAH76872.1| hypothetical membrane protein [Desulfovibrio magneticus RS-1]
Length = 326
Score = 93.4 bits (231), Expect = 4e-17, Method: Composition-based stats.
Identities = 41/286 (14%), Positives = 104/286 (36%), Gaps = 23/286 (8%)
Query: 44 RMKSVAVEREILRKQQITSLQKDS-ASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKL 102
R+ + + R +Q+T + ++ L + S ++ L L + L
Sbjct: 30 RLTDTSGKEIARRVEQVTRGEGLGLDTADLVKKHELSGLRWLDVL-LSRQAWSRRMDKML 88
Query: 103 RAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFC 162
A ++ L I +++ L+ + + +++ + + V
Sbjct: 89 DQADIKAP--LGIFVMLSLIFAVTGYLAASLYLSNP------------LLSLAVAGVCGW 134
Query: 163 APSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEM 222
P W+ KR + +R P+AL+L+ + +G + + V + P+ E
Sbjct: 135 LPFKWVVMRKDKRMADFERQLPEALELVGRALRAGHTFTSGMGMVVSEFAD---PIRVEF 191
Query: 223 LLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSE 282
T+ E++F A +N +R + ++ + G ++ + + + R
Sbjct: 192 QTTLEEINFGMGVTTALDNLMDRVDCPDLNFFVVSVKIQNESGGNLAEIIGNISGLIRER 251
Query: 283 RLMEAEKKAASLGPKLTVPMIIFFLP---VLILVIIGPAILSIIDT 325
++ + S ++ ++ LP ++ + P L ++ T
Sbjct: 252 FKLKGRIQVLSAEGRM-AAWVLCLLPFGVAAVIQFVNPGYLGLLFT 296
>gi|269126092|ref|YP_003299462.1| type II secretion system protein [Thermomonospora curvata DSM
43183]
gi|268311050|gb|ACY97424.1| type II secretion system protein [Thermomonospora curvata DSM
43183]
Length = 660
Score = 93.4 bits (231), Expect = 4e-17, Method: Composition-based stats.
Identities = 48/295 (16%), Positives = 116/295 (39%), Gaps = 29/295 (9%)
Query: 23 SIFSLIYAVVIPSLGSGELEKRMK----SVAVEREILRKQQITSLQKDSASSRLRTRDSK 78
++ + +A ++ + R + +V +ER LR + + + D+ SR R +
Sbjct: 340 AVLGVCFAAILLLILVVGGLGRREPPEWAVRIERYRLRARP-SPAEPDAEESRARNPLMR 398
Query: 79 SLRNFVKKLNLKAILVDENIVNKLRAAGF---RSEYSLNILLVVRLVVPIIFLILGIIWI 135
K+ L + + L AG E++L +++ + ++ ++G + +
Sbjct: 399 GALTLSMKITGSGRLA-QRLAQDLDRAGILLRPHEWTLLRIVIGACLTAVVTPLVGNVLL 457
Query: 136 FGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVE 195
+ + + A ++ ++R ++ PDAL L+ +
Sbjct: 458 AAPP----------------VAVITWVATRAYLRGRAERRLTAFADQLPDALQLVAGSLR 501
Query: 196 SGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNAT 255
SG S+ Q++ R+A G + P+ +EM +A+ + + A + +R +
Sbjct: 502 SGFSVAQSVERLA---GLELQPMGQEMARAVAQTRLGVSTEDALRSVADRMNCRDLHWVV 558
Query: 256 QALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVL 310
A+ G ++ + + R + + +A S +L+ ++ LPV+
Sbjct: 559 LAIQIQREVGGNLSEVIETTAETMRERTRLRRQIRALSAEGRLSA-YVLIALPVI 612
>gi|212224827|ref|YP_002308063.1| hypothetical protein TON_1676 [Thermococcus onnurineus NA1]
gi|212009784|gb|ACJ17166.1| conserved hypothetical membrane protein [Thermococcus onnurineus
NA1]
Length = 355
Score = 93.4 bits (231), Expect = 5e-17, Method: Composition-based stats.
Identities = 35/206 (16%), Positives = 84/206 (40%), Gaps = 3/206 (1%)
Query: 121 LVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIK 180
+ + + I I+ F + L+ P + IL GF + + ++R ++
Sbjct: 121 VALMLSVAIFSGIFGFLFSYLIYMPIDTSILIGILGFIGGFIYMRQYPKMMWKRRVVEVE 180
Query: 181 RAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFE 240
RA P AL + + +G+ I +A+ VA +SEE L + ++ + + A
Sbjct: 181 RAMPYALRHMASLLSAGVGISEAILSVA---RADYGVISEEFELILRDMRTGSSFEEALT 237
Query: 241 NFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV 300
F + + V + ++++ ++G ++ + L + + E M+ + + +
Sbjct: 238 KFDEKMSSENVSRVVKQILRAVKFGGNLSEVLYKMAEDFAFEYRMKLIEYVQRVNGIAFI 297
Query: 301 PMIIFFLPVLILVIIGPAILSIIDTM 326
M I + + V+ A + ++
Sbjct: 298 YMFITIVMPTMFVVGILAGSVMAQSL 323
>gi|77462449|ref|YP_351953.1| putative Flp pilus assembly protein TadB [Rhodobacter sphaeroides
2.4.1]
gi|126461327|ref|YP_001042441.1| type II secretion system protein [Rhodobacter sphaeroides ATCC
17029]
gi|221638312|ref|YP_002524574.1| Type II secretion system protein [Rhodobacter sphaeroides KD131]
gi|77386867|gb|ABA78052.1| Putative Flp pilus assembly protein TadB [Rhodobacter sphaeroides
2.4.1]
gi|126102991|gb|ABN75669.1| type II secretion system protein [Rhodobacter sphaeroides ATCC
17029]
gi|221159093|gb|ACM00073.1| Type II secretion system protein [Rhodobacter sphaeroides KD131]
Length = 322
Score = 93.0 bits (230), Expect = 5e-17, Method: Composition-based stats.
Identities = 50/302 (16%), Positives = 112/302 (37%), Gaps = 31/302 (10%)
Query: 15 AVAITTAVSIFSLIYAVVIPSLGSG-ELEKRMKSVAVEREILRKQQITSLQKDSASSRLR 73
+ I V++ L+ + + G L R+ +++ L+K+ ++
Sbjct: 8 IIYILIFVAVLLLVEGIYLTVFGKTISLNSRVS-----------RRLALLEKNQNREQVL 56
Query: 74 TRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGII 133
+ K + + + + + K NI + +V I+ L+ +
Sbjct: 57 EQLRKEMSQHMNARGIPLYAILASKAQK-----------ANIAFSPKALVGIMVLLSAVA 105
Query: 134 WIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLIC 193
++ P AV++ + W++ +KR + I+ PDA++L++
Sbjct: 106 YLGLTIGTSAAPLVRGAVAVVMGVGAVYV----WVNGKAKKRMALIEEQLPDAVELMVRS 161
Query: 194 VESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRN 253
+ G A++ VA+++ PL E + E ++ + F R + +R
Sbjct: 162 LRVGHPFSSAIQIVAKEVPD---PLGTEFGVIADEAAYGRDVAECIRAFAERMESQDLRF 218
Query: 254 ATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILV 313
A+ + G ++ + L L RS + KA + K + + P++ LV
Sbjct: 219 LAVAVTIQQQSGGNLAEILEGLAKVIRSRFKLFRRVKAITAEAKWSG-TFLSAFPIVALV 277
Query: 314 II 315
I
Sbjct: 278 AI 279
>gi|283852077|ref|ZP_06369351.1| type II secretion system protein [Desulfovibrio sp. FW1012B]
gi|283572467|gb|EFC20453.1| type II secretion system protein [Desulfovibrio sp. FW1012B]
Length = 327
Score = 93.0 bits (230), Expect = 5e-17, Method: Composition-based stats.
Identities = 48/307 (15%), Positives = 117/307 (38%), Gaps = 32/307 (10%)
Query: 22 VSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLR 81
+ + ++ + E+ +R++ +A Q L D A ++ + LR
Sbjct: 20 LFVAVVLVIRRLTDTSGKEMARRLEQLA---------QGKGLGADFAGDIVKKHEMSGLR 70
Query: 82 NFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKL 141
L+ +A + L A E L + +++ LV + + +++ +
Sbjct: 71 WLDVFLSRQAW--SRRMDRMLDQADI--EAPLGLFVLLSLVFGVTGYVAASLYLGNF--- 123
Query: 142 LEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISID 201
A + IG+ P WI+ KR ++ + P+AL+L+ +++G +
Sbjct: 124 ---------LARVAIGFALGVLPFKWIAMRKAKRMAAFETQLPEALELVGRALKAGHTFS 174
Query: 202 QALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQS 261
+ V + P+ E T+ E++F VA +N R + ++
Sbjct: 175 SGMGMVVSEFAE---PIRGEFQKTMEEVNFGMGVTVALDNLMERVDCPDLNFFVISVKIQ 231
Query: 262 DRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLI---LVIIGPA 318
+ G ++ + + + R ++ + S ++ ++ LP + + ++ P
Sbjct: 232 NETGGNLAEIVENIAWLIRERIKLKGRIRVLSAEGRM-AAWVLCLLPFFVCGAVQMLNPG 290
Query: 319 ILSIIDT 325
L+++ T
Sbjct: 291 YLNLLFT 297
>gi|313902405|ref|ZP_07835808.1| Type II secretion system F domain [Thermaerobacter subterraneus DSM
13965]
gi|313467336|gb|EFR62847.1| Type II secretion system F domain [Thermaerobacter subterraneus DSM
13965]
Length = 367
Score = 93.0 bits (230), Expect = 5e-17, Method: Composition-based stats.
Identities = 40/266 (15%), Positives = 87/266 (32%), Gaps = 20/266 (7%)
Query: 36 LGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLN--LKAIL 93
+ +R+++V R ++ + +R + V++ L+
Sbjct: 62 WRGARVARRLEAV-HRHSRQRGLRLAPMLAMEDVARTAREARSWRQQLVERAEARLRGTR 120
Query: 94 VDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAV 153
+ + KL A R + + LL R
Sbjct: 121 WLDGVQRKLNRARLRWRA--------------VEFVALQAGAGLAGGLLGLAMGGRWPLA 166
Query: 154 ILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGG 213
+ G P +++ Q+R + PDAL L+ ++SG S QA VA ++
Sbjct: 167 LAATVAGILLPDAYLARRYQQRLRAFDGQLPDALTLMANALKSGYSFLQAADVVAREM-- 224
Query: 214 QSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLR 273
P+++E + E + A N +R + A++ + G ++ L
Sbjct: 225 -PPPIADEFAWLVKETRVNIPLEDALANLLDRVPSADLDLVVTAVLIQKQVGGNLAGVLE 283
Query: 274 VLVSETRSERLMEAEKKAASLGPKLT 299
R ++ + + + +L+
Sbjct: 284 RTAETIRERVRLQGQIRTLTAQGRLS 309
>gi|90411199|ref|ZP_01219212.1| hypothetical Flp pilus assembly protein TadB [Photobacterium
profundum 3TCK]
gi|90328045|gb|EAS44366.1| hypothetical Flp pilus assembly protein TadB [Photobacterium
profundum 3TCK]
Length = 324
Score = 93.0 bits (230), Expect = 5e-17, Method: Composition-based stats.
Identities = 45/294 (15%), Positives = 111/294 (37%), Gaps = 18/294 (6%)
Query: 22 VSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLR 81
+ ++ L++ + + L + A +L+ + + + ++ L
Sbjct: 5 IKVYLLVFFIAAVVVSQTVLVSSTGARAKRSRLLKNKLELIAETSAGHNQQSLLRKHYLD 64
Query: 82 NFVKKLN-LKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDK 140
+ L+ V E + L AG + I + +I L + K
Sbjct: 65 KLTPRERQLENNAVGEYLSEHLTLAGLEWKAYKTIFWL------VIISFLSTVISLALTK 118
Query: 141 LLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISI 200
+ + + V+ + W+ +KR + + +ALD++ + G
Sbjct: 119 SITFSVLMPFLIVLSFTF--------WLKYKAEKRLCLFEEQFVEALDVMKRALLVGYPF 170
Query: 201 DQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQ 260
+ ++ V++++ P+S E T +EL++ + +VA N R V A+I
Sbjct: 171 TEVMKTVSQEM---PAPVSVEFGKTFSELNYGVDIKVALANLAQRNPSVSVLAFNSAVII 227
Query: 261 SDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVI 314
G ++ ++L L R + + ++ S +++ +++ VL+++I
Sbjct: 228 QKETGGNLAETLENLSEVIRGRFRLLRKVRSLSAEGRMSAWILMCVPFVLVIMI 281
>gi|167584965|ref|ZP_02377353.1| type II secretion system protein [Burkholderia ubonensis Bu]
Length = 325
Score = 93.0 bits (230), Expect = 5e-17, Method: Composition-based stats.
Identities = 52/301 (17%), Positives = 113/301 (37%), Gaps = 27/301 (8%)
Query: 9 FDATELAVAITTAVSIFSLIYAVVIPSLGS-GELEKRMKSVAVEREILRKQQITSLQKDS 67
D A I V++ + G KR+++ +R +
Sbjct: 1 MDPIFYAFVILLFVAVVLTFEGLYQWWNARHGVAAKRIEA------RIRAMSAGGQVQKE 54
Query: 68 ASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIF 127
S L+ R + F +L L A+ ++ L+ +G +S+ L+ + L +P +
Sbjct: 55 RLSILKERMLNEAKPF-DRL-LMAMPRVHSLDLLLQQSGMS--WSVAKLVGMSLALPPLA 110
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
L+ PF + V + G P + + +R ++R PD
Sbjct: 111 LVA--------LTFTTLPFPVAVLIALPTGV----LPLLVVMRNRARRMRKLERQLPDVC 158
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQ 247
D++ + SG + A+ V+++ P+ E +T E+++ + A N NR
Sbjct: 159 DMIARALRSGHAFTSAIGMVSDEFSD---PMGGEFRITFDEINYGVSLHDALMNLANRVP 215
Query: 248 MDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFL 307
+ +R A++ G ++ + L + + R + + + S +++ ++ L
Sbjct: 216 VRDLRYFVIAVLIQRETGGNLAELLDSIAALIRERFKLFDKIRVLSAEGRMSA-WVLGLL 274
Query: 308 P 308
P
Sbjct: 275 P 275
>gi|108759913|ref|YP_632817.1| type II secretion system protein F domain [Myxococcus xanthus DK
1622]
gi|108463793|gb|ABF88978.1| type II secretion system protein F domain protein [Myxococcus
xanthus DK 1622]
Length = 281
Score = 93.0 bits (230), Expect = 6e-17, Method: Composition-based stats.
Identities = 31/164 (18%), Positives = 65/164 (39%), Gaps = 3/164 (1%)
Query: 151 GAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAED 210
++ GF P + + + ++R DAL + ++G++ QA+ VA +
Sbjct: 78 IMAVVATVFGFFLPMLMVKHYRKRRIKKFNVQLVDALQAMANAFKAGLTFPQAIEHVARE 137
Query: 211 IGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGD 270
PLS+E L + E+ + A N R D + + + + G ++ +
Sbjct: 138 ---AMPPLSQEFGLFVKEVKLGVPLEEALINMGRRVGSDDLELVVVSTNIARQLGGNMAE 194
Query: 271 SLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVI 314
+ + R +E + A + KL ++ VL +V+
Sbjct: 195 MFETISTVIRERFRLEGKIDALTSQGKLQGWIVAAMPGVLGMVL 238
>gi|312136703|ref|YP_004004040.1| type ii secretion system f domain protein [Methanothermus fervidus
DSM 2088]
gi|311224422|gb|ADP77278.1| Type II secretion system F domain protein [Methanothermus fervidus
DSM 2088]
Length = 355
Score = 93.0 bits (230), Expect = 6e-17, Method: Composition-based stats.
Identities = 40/202 (19%), Positives = 81/202 (40%), Gaps = 24/202 (11%)
Query: 122 VVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKR 181
++ ++ ++LG ++F L + + ++ P + R I R
Sbjct: 134 ILALVIILLGFGFVFAL---------LSLLVMFMVSVFARFLPKL----REGSRADEISR 180
Query: 182 AWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFEN 241
P AL + + +G+ A++ VA G LSEE T+ E+ + + A N
Sbjct: 181 ELPYALRQMATELRAGLGFHDAMKSVATSGYG---ALSEEFARTLEEIKYGESTTRALMN 237
Query: 242 FYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVP 301
R ++ A Q +++S G + +L ++ + E M+ + L
Sbjct: 238 LSVRVPSPGLKRAIQQIVRSLESGGDVAKALEIIAEDIAYELRMKFRDYSQKLNS----- 292
Query: 302 MIIFFLPVLILVIIGPAILSII 323
F + + + I+GPA+L I+
Sbjct: 293 ---FMMIYMFIGIVGPAVLPIL 311
>gi|120602155|ref|YP_966555.1| type II secretion system protein [Desulfovibrio vulgaris DP4]
gi|120562384|gb|ABM28128.1| type II secretion system protein [Desulfovibrio vulgaris DP4]
Length = 321
Score = 93.0 bits (230), Expect = 6e-17, Method: Composition-based stats.
Identities = 44/265 (16%), Positives = 100/265 (37%), Gaps = 5/265 (1%)
Query: 61 TSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVR 120
+++ + RL T L K L D ++ L AA + IL +
Sbjct: 28 RRTERERIARRLGTLHGAKGDARGVDLERKLTLSDMPWLDDLLAAQAWTRRMALILEQGQ 87
Query: 121 LVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIK 180
+ + L+L + + F V +++ P + + +R + +
Sbjct: 88 VKTTLGMLVLTSVMAGALCLMAMALFSSNVFLLVVPPLAVAYVPFMLVFRKRDRRMARFQ 147
Query: 181 RAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFE 240
R PDALDL+ + +G + +Q +R VA++ P+ E + E+++ A
Sbjct: 148 RQLPDALDLVGRALRAGHAFNQGMRMVADEFED---PIGPEFQKVLDEINYGVPADTALI 204
Query: 241 NFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV 300
N R ++ ++ G ++ + + + R + + S +LT
Sbjct: 205 NLVRRVDCPDLKFFVVSVNIQRETGGNLAEIVTGIARLIRERFKLAGRVRVLSAEGRLTA 264
Query: 301 PMIIFFLPVLILVI--IGPAILSII 323
+++ + ++I + P +S++
Sbjct: 265 WILLALPFGIGIIINMLNPDFMSVL 289
>gi|187921508|ref|YP_001890540.1| type II secretion system protein [Burkholderia phytofirmans PsJN]
gi|187719946|gb|ACD21169.1| type II secretion system protein [Burkholderia phytofirmans PsJN]
Length = 282
Score = 93.0 bits (230), Expect = 6e-17, Method: Composition-based stats.
Identities = 33/174 (18%), Positives = 77/174 (44%), Gaps = 3/174 (1%)
Query: 141 LLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISI 200
++ + + +L + P +++ + +KR ++++ PDAL ++ + +G S
Sbjct: 69 IIAFLLTGSILIALLAVPIAMTLPKKYLARMRKKRIGTLEKQLPDALLMMSGALRAGASF 128
Query: 201 DQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQ 260
AL V + + P+S+E L + E+ + +A N R + T A+
Sbjct: 129 PSALEAVVHE---TTPPISQEFDLLMREIRLGIDMDIAMRNVEKRIPIPDFLMMTAAVTI 185
Query: 261 SDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVI 314
+ G ++ ++L + R + ME + KA + ++ ++ L+LV+
Sbjct: 186 AREVGGNLAEALESVARTLREKLQMEGKIKALTSQGRMQGIVMTCLPLFLMLVL 239
>gi|91777215|ref|YP_552423.1| putative type II secretion system protein F [Burkholderia
xenovorans LB400]
gi|91689875|gb|ABE33073.1| Putative type II secretion system protein F [Burkholderia
xenovorans LB400]
Length = 282
Score = 92.6 bits (229), Expect = 6e-17, Method: Composition-based stats.
Identities = 32/174 (18%), Positives = 76/174 (43%), Gaps = 3/174 (1%)
Query: 141 LLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISI 200
++ + F + + + P ++ + +KR ++++ PDAL ++ + +G S
Sbjct: 69 VIVFLFSHSILFALASVPIAMMLPKKYLKRMRKKRIEALEKQLPDALLMMSGALRAGASF 128
Query: 201 DQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQ 260
AL V + P+S+E L + E+ + +A N R + + T A+
Sbjct: 129 PAALEAVVYETA---PPISQEFDLLMREIRLGIDLDIAMRNVEKRIPIPDLLMMTAAVTI 185
Query: 261 SDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVI 314
+ G ++ ++L + R + ME + +A + ++ ++ L+LV+
Sbjct: 186 AREVGGNLAEALESVARTLREKLQMEGKIRALTSQGRMQGIVMTCLPLFLMLVL 239
>gi|197302282|ref|ZP_03167341.1| hypothetical protein RUMLAC_01009 [Ruminococcus lactaris ATCC
29176]
gi|197298713|gb|EDY33254.1| hypothetical protein RUMLAC_01009 [Ruminococcus lactaris ATCC
29176]
Length = 410
Score = 92.6 bits (229), Expect = 7e-17, Method: Composition-based stats.
Identities = 35/150 (23%), Positives = 66/150 (44%), Gaps = 7/150 (4%)
Query: 179 IKRAWPDALDLLLICVESGISIDQALRRVAEDIG-----GQSVPLSEEMLLTIAELSFLP 233
++R +P ++ + + +G+S+ A +R+ ED EEM+ T ++
Sbjct: 260 MRRDYPQIINRFSLYIGAGMSVRNAWQRITEDYRKNKERTGRRKAYEEMIYTENQMKNKA 319
Query: 234 NRQVAFENFYNRTQMDCVRNATQALIQSDRYGT-SIGDSLRVLVSETRSERLMEAEKKAA 292
+E + R + R L Q+ R G+ + + L+ E ER +A K
Sbjct: 320 AESECYEEYGIRCGLSVYRRFGTLLSQNLRKGSKGLSELLKRETGEMFEERKKQARKLGE 379
Query: 293 SLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
G KL +P+ L V+ +++I PA +I
Sbjct: 380 EAGTKLMIPL-FMMLAVVFIIVIVPAFFTI 408
>gi|152967730|ref|YP_001363514.1| type II secretion system protein [Kineococcus radiotolerans
SRS30216]
gi|151362247|gb|ABS05250.1| type II secretion system protein [Kineococcus radiotolerans
SRS30216]
Length = 295
Score = 92.6 bits (229), Expect = 7e-17, Method: Composition-based stats.
Identities = 26/145 (17%), Positives = 56/145 (38%), Gaps = 4/145 (2%)
Query: 178 SIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQV 237
I PD +LL + V +G ++ AL RV+ S PL ++ ++ +
Sbjct: 152 EIAADLPDVAELLALSVGAGENVVAALERVS----AGSGPLCAQLRHSLGRVRTGTPLLD 207
Query: 238 AFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPK 297
A + R + + + G+ + + LR ++ R + +
Sbjct: 208 ALVDLAGRWGVAPFTRLVDGIAVAVESGSPLAEVLRAQAADAREAERRRLLETGGRREVQ 267
Query: 298 LTVPMIIFFLPVLILVIIGPAILSI 322
+ VP++ LPV ++ + P + +
Sbjct: 268 MMVPVVFGVLPVTVVFAVFPGLAQL 292
>gi|46580528|ref|YP_011336.1| hypothetical protein DVU2123 [Desulfovibrio vulgaris str.
Hildenborough]
gi|46449947|gb|AAS96596.1| membrane protein, putative [Desulfovibrio vulgaris str.
Hildenborough]
gi|311234267|gb|ADP87121.1| Type II secretion system F domain protein [Desulfovibrio vulgaris
RCH1]
Length = 321
Score = 92.6 bits (229), Expect = 7e-17, Method: Composition-based stats.
Identities = 44/265 (16%), Positives = 100/265 (37%), Gaps = 5/265 (1%)
Query: 61 TSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVR 120
+++ + RL T L K L D ++ L AA + IL +
Sbjct: 28 RRTERERIARRLGTLHGAKGDTRGVDLERKLTLSDMPWLDDLLAAQAWTRRMALILEQGQ 87
Query: 121 LVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIK 180
+ + L+L + + F V +++ P + + +R + +
Sbjct: 88 VKTTLGMLVLTSVMAGALCLMAMALFSSNVFLLVVPPLAVAYVPFMLVFRKRARRMARFQ 147
Query: 181 RAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFE 240
R PDALDL+ + +G + +Q +R VA++ P+ E + E+++ A
Sbjct: 148 RQLPDALDLVGRALRAGHAFNQGMRMVADEFED---PIGPEFQKVLDEINYGVPADTALI 204
Query: 241 NFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV 300
N R ++ ++ G ++ + + + R + + S +LT
Sbjct: 205 NLVRRVDCPDLKFFVVSVNIQRETGGNLAEIVTGIARLIRERFKLAGRVRVLSAEGRLTA 264
Query: 301 PMIIFFLPVLILVI--IGPAILSII 323
+++ + ++I + P +S++
Sbjct: 265 WILLALPFGIGIIINMLNPDFMSVL 289
>gi|91788418|ref|YP_549370.1| type II secretion system protein [Polaromonas sp. JS666]
gi|91697643|gb|ABE44472.1| type II secretion system protein [Polaromonas sp. JS666]
Length = 325
Score = 92.3 bits (228), Expect = 8e-17, Method: Composition-based stats.
Identities = 52/320 (16%), Positives = 116/320 (36%), Gaps = 28/320 (8%)
Query: 9 FDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSA 68
D A +++ L+ + + + E ER R + +++ A
Sbjct: 1 MDYLYYLFATLIFIAVVLLVEGLYLSWNSTKGPE-------AERVARRLRVMSAGGHGDA 53
Query: 69 SSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFL 128
S T++ V + L + + L+ +G +S+ L + L+ ++
Sbjct: 54 QSISITKERLLSETPVMQRILLGVPRVGTLDRLLQQSGLS--WSVGEFLGMALIAFLVVF 111
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
G L + ++++ +KR I+ PDALD
Sbjct: 112 FAGSYLAVPLLLRLALAGAAALLPF------------LYVTRAKRKRLDRIEHQLPDALD 159
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
L+ + +G + AL+ V +++ + PL+ E + E++F A N R
Sbjct: 160 LMGRALRAGHAFPTALKMVGDEM---NDPLAGEFRIAFDEVNFGIAMPDALMNMATRVPS 216
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP 308
+R A++ G ++ + L + + R + + + S K++ ++ LP
Sbjct: 217 TDLRYFVIAVLIQRETGGNLSELLTSISAIIRDRIKLMGQVRVLSAEGKMSA-WVLSLLP 275
Query: 309 ---VLILVIIGPAILSIIDT 325
++ + P L ++ T
Sbjct: 276 FGAAFMIQLTNPKFLEVLYT 295
>gi|313906429|ref|ZP_07839766.1| Type II secretion system F domain [Eubacterium cellulosolvens 6]
gi|313468730|gb|EFR64095.1| Type II secretion system F domain [Eubacterium cellulosolvens 6]
Length = 402
Score = 92.3 bits (228), Expect = 9e-17, Method: Composition-based stats.
Identities = 33/153 (21%), Positives = 61/153 (39%), Gaps = 10/153 (6%)
Query: 171 LVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELS 230
++ + + R +P+ + L + +G+S+ QA++R+A + E E+
Sbjct: 259 KIRAHREELIRRYPEIVSELQLYTAAGLSLRQAMKRIARN--------EPEAERCCYEME 310
Query: 231 FLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTS-IGDSLRVLVSETRSERLMEAEK 289
Q A+ F R R L QS G + + + L R A
Sbjct: 311 NGVLEQDAYTRFGERCGTAEYRKLALLLAQSQMKGGARLSELLEEEAQGAFENRKRRARV 370
Query: 290 KAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
++ +PM + L VLI+V++ PA L+
Sbjct: 371 LGEKAAVRMVLPMGMMLLIVLIIVMV-PAFLTF 402
>gi|295700366|ref|YP_003608259.1| type II secretion system F domain protein [Burkholderia sp.
CCGE1002]
gi|295439579|gb|ADG18748.1| Type II secretion system F domain protein [Burkholderia sp.
CCGE1002]
Length = 325
Score = 92.3 bits (228), Expect = 1e-16, Method: Composition-based stats.
Identities = 50/312 (16%), Positives = 114/312 (36%), Gaps = 29/312 (9%)
Query: 16 VAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTR 75
+ + A + + + G + +R+ S +R S L+TR
Sbjct: 9 IILLFAAVVLATGGVYEYWNSRHGPVARRVDS------RIRAVSAGGPMSRQRLSILKTR 62
Query: 76 DSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWI 135
+ + + +L L+ V + L+ +G +S+ V+P LI+G
Sbjct: 63 -TMAESAVLARLLLRIPRV-HALDLFLQQSGLS--WSVGRFFGTCAVLPPFVLIVGA--- 115
Query: 136 FGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVE 195
++ + P V++ +R ++R PD D+L +
Sbjct: 116 ---------SLRVPWVFTAGAAALCTLLPIVYVQRRRHRRIRQLERQLPDVCDMLSRALR 166
Query: 196 SGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNAT 255
SG + A+ V + P+S E + E+++ + A N R + +R
Sbjct: 167 SGHAFTGAIDMVGAEFTE---PMSGEFRIVFDEINYGVSISEALTNLATRVPIRDLRYFV 223
Query: 256 QALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLI---L 312
A++ G ++ + L + + R + + + S +++ ++ LP + +
Sbjct: 224 IAVVIQRETGGNLAEVLDGITALIRDRFKLFDKVRVLSAEGRMSA-WVLGLLPFGVGGAM 282
Query: 313 VIIGPAILSIID 324
+ I P L+++
Sbjct: 283 MAINPGFLNVLW 294
>gi|331089203|ref|ZP_08338105.1| hypothetical protein HMPREF1025_01688 [Lachnospiraceae bacterium
3_1_46FAA]
gi|330405755|gb|EGG85284.1| hypothetical protein HMPREF1025_01688 [Lachnospiraceae bacterium
3_1_46FAA]
Length = 425
Score = 92.3 bits (228), Expect = 1e-16, Method: Composition-based stats.
Identities = 39/205 (19%), Positives = 80/205 (39%), Gaps = 19/205 (9%)
Query: 132 IIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLL 191
+IW +G + +G + + + S +K +K +P ++
Sbjct: 224 VIWAYGVQTRAYGILVMGIGFAVFV----IISSSQKEKEEKKKEFREMKLDYPQIINKFN 279
Query: 192 ICVESGISIDQALRRVAEDIGGQSVP-------------LSEEMLLTIAELSFLPNRQVA 238
+ ++SG++I +A ++A + EEM+ + ++S +
Sbjct: 280 LYIKSGMTIRKAWFKIAGEYEKDQKEKEQISAKACGRKKAYEEMVNVMYKISGGASEGEC 339
Query: 239 FENFYNRTQMDCVRNATQALIQSDRYGT-SIGDSLRVLVSETRSERLMEAEKKAASLGPK 297
+E + R + R L Q+ R GT + + L + +R A+K G K
Sbjct: 340 YEEYGIRCNLSEYRKFGMMLSQNLRKGTRGLTELLEREAEDAFEQRKNLAKKAGEEAGTK 399
Query: 298 LTVPMIIFFLPVLILVIIGPAILSI 322
L +P+ L ++ ++I PA SI
Sbjct: 400 LMIPL-FLMLIIVFAIVIVPAFFSI 423
>gi|224824219|ref|ZP_03697327.1| type II secretion system protein [Lutiella nitroferrum 2002]
gi|224603638|gb|EEG09813.1| type II secretion system protein [Lutiella nitroferrum 2002]
Length = 324
Score = 92.3 bits (228), Expect = 1e-16, Method: Composition-based stats.
Identities = 46/265 (17%), Positives = 108/265 (40%), Gaps = 11/265 (4%)
Query: 66 DSASSRLRTRDSKSLRNFVKKLNL--KAILVDENIVNKLRAAGFRSEYSLNILLVVRLVV 123
++ R + + + + +NL + +L D +V + G + L+ +L+ +
Sbjct: 34 EATRIERRLQAMSAGAHHSESMNLMKERLLSDTKVVQRFLL-GIPRAHQLDRILLQSGLK 92
Query: 124 PIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGY-VGFCAPSVWISNLVQKRQSSIKRA 182
+ LG+ G V ++ G P + + KR + +
Sbjct: 93 LKVGSFLGLTLACGLATFFLLQLLPLPLLVPVLVGLAGATIPWMVVMRFRHKRLAKFEEQ 152
Query: 183 WPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENF 242
PDA+DL+ + +G ++ Q+L+ + +++ P+S E T E+++ + Q A N
Sbjct: 153 LPDAIDLMCRALRAGHALPQSLKMIGDEMSD---PISGEFRTTFDEVNYGFSLQEAMMNL 209
Query: 243 YNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPM 302
R +R A++ G ++ + L + + R+ + + + KL+
Sbjct: 210 ATRIPSTDLRYMVIAVLIQRETGGNLAELLGNISALIRARLKLYGTIRVLAAEGKLSA-W 268
Query: 303 IIFFLP---VLILVIIGPAILSIID 324
I+ LP L++ ++ P + ++
Sbjct: 269 ILTILPFAVALVIHLLNPGFMKVLW 293
>gi|296156493|ref|ZP_06839331.1| Type II secretion system F domain protein [Burkholderia sp. Ch1-1]
gi|295893092|gb|EFG72872.1| Type II secretion system F domain protein [Burkholderia sp. Ch1-1]
Length = 325
Score = 92.3 bits (228), Expect = 1e-16, Method: Composition-based stats.
Identities = 51/318 (16%), Positives = 115/318 (36%), Gaps = 26/318 (8%)
Query: 9 FDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSA 68
+ + + A+ +++ I V + K V E +R
Sbjct: 1 MNTSFIGFAVLAFLAVVLSIEGVYLFWTSHHS-----KGVKRMDERIRALSAGGNVSSEQ 55
Query: 69 SSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFL 128
S L+ R FV L L+ V + +L+ +G ++S+ + L+ +
Sbjct: 56 LSILKRRMLSD-SPFVTSLLLRMPRV-HALDRQLQQSGL--KWSVARFIAYTLLSALTGA 111
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
G + + + + V P++ + +R ++R PDA D
Sbjct: 112 FAGFV------------LHVPAPVLGVFAAVAGLLPTMIVRRKRVRRILQLERQLPDAAD 159
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
L+ + +G S L V +++ PL E L E+++ + A N +R +
Sbjct: 160 LIARALRAGHSFPATLGMVGQELPD---PLGGEFALVFDEINYGVSMNDALLNMVSRVPV 216
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP 308
+ +R A++ G ++ + L + R + + + S +L+ ++
Sbjct: 217 EDLRYFVIAVLIQREAGGNLAEILGSISGIIRERLKLLGKVRVLSAEGRLSAWVLAVLPF 276
Query: 309 VL--ILVIIGPAILSIID 324
+ +L ++ P +S+
Sbjct: 277 AILGLLTVLNPGYISVFW 294
>gi|309777429|ref|ZP_07672387.1| conserved hypothetical protein [Erysipelotrichaceae bacterium
3_1_53]
gi|308914825|gb|EFP60607.1| conserved hypothetical protein [Erysipelotrichaceae bacterium
3_1_53]
Length = 201
Score = 91.9 bits (227), Expect = 1e-16, Method: Composition-based stats.
Identities = 41/196 (20%), Positives = 89/196 (45%), Gaps = 15/196 (7%)
Query: 121 LVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIK 180
LV+PI ++ G++ + + IL+ ++ F + IS++++KR I
Sbjct: 12 LVIPITLILYGLL-----------QNAVVIVLFILLEFLAFYYFQMQISDVMKKRDMEIS 60
Query: 181 RAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFE 240
R P + + + V +G+ + +A +VA+ L +EM + +++ + A+
Sbjct: 61 RDLPSIISKITLLVNAGMVLREAWAQVAQ---TGDTTLYKEMQRAVEDMNNGMSEVDAYM 117
Query: 241 NFYNRTQMDCVRNATQALIQSDRYGT-SIGDSLRVLVSETRSERLMEAEKKAASLGPKLT 299
+F R Q VR + Q+ G + L+ +E+ ++ + K+
Sbjct: 118 DFSQRCQSAKVRKFISTVEQNVSKGNKDLVAYLKEQSQIAWTEKKEYVRQQGETASSKML 177
Query: 300 VPMIIFFLPVLILVII 315
+P+ I F+ +LI+VI+
Sbjct: 178 IPIGIMFVGILIMVIV 193
>gi|153815435|ref|ZP_01968103.1| hypothetical protein RUMTOR_01670 [Ruminococcus torques ATCC 27756]
gi|145847294|gb|EDK24212.1| hypothetical protein RUMTOR_01670 [Ruminococcus torques ATCC 27756]
Length = 425
Score = 91.9 bits (227), Expect = 1e-16, Method: Composition-based stats.
Identities = 39/205 (19%), Positives = 80/205 (39%), Gaps = 19/205 (9%)
Query: 132 IIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLL 191
+IW +G + +G + + + S +K +K +P ++
Sbjct: 224 VIWAYGVQTRAYGILVMGIGFAVFV----IISSSQKEKEEKKKEFREMKLDYPQIINKFN 279
Query: 192 ICVESGISIDQALRRVAEDIGGQSVP-------------LSEEMLLTIAELSFLPNRQVA 238
+ ++SG++I +A ++A + EEM+ + ++S +
Sbjct: 280 LYIKSGMTIRKAWFKIAGEYEKDQKEKEQISAKACGRKKAYEEMVNVMYKISGGASEGEC 339
Query: 239 FENFYNRTQMDCVRNATQALIQSDRYGT-SIGDSLRVLVSETRSERLMEAEKKAASLGPK 297
+E + R + R L Q+ R GT + + L + +R A+K G K
Sbjct: 340 YEEYGIRCNLSEYRKFGMMLSQNLRKGTRGLTELLEREAEDAFEQRKNLAKKAGEEAGTK 399
Query: 298 LTVPMIIFFLPVLILVIIGPAILSI 322
L +P+ L ++ ++I PA SI
Sbjct: 400 LMIPL-FLMLIIVFAIVIVPAFFSI 423
>gi|317500897|ref|ZP_07959108.1| hypothetical protein HMPREF1026_01051 [Lachnospiraceae bacterium
8_1_57FAA]
gi|316897695|gb|EFV19755.1| hypothetical protein HMPREF1026_01051 [Lachnospiraceae bacterium
8_1_57FAA]
Length = 425
Score = 91.9 bits (227), Expect = 1e-16, Method: Composition-based stats.
Identities = 39/205 (19%), Positives = 80/205 (39%), Gaps = 19/205 (9%)
Query: 132 IIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLL 191
+IW +G + +G + + + S +K +K +P ++
Sbjct: 224 VIWAYGVQTRAYGILVMGIGFAVFV----IISSSQKEKEEKKKEFREMKLDYPQIINKFN 279
Query: 192 ICVESGISIDQALRRVAEDIGGQSVP-------------LSEEMLLTIAELSFLPNRQVA 238
+ ++SG++I +A ++A + EEM+ + ++S +
Sbjct: 280 LYIKSGMTIRKAWFKIAGEYEKDQKEKEQISAKACGRKKAYEEMVNVMYKISGGASEGEC 339
Query: 239 FENFYNRTQMDCVRNATQALIQSDRYGT-SIGDSLRVLVSETRSERLMEAEKKAASLGPK 297
+E + R + R L Q+ R GT + + L + +R A+K G K
Sbjct: 340 YEEYGIRCNLSEYRKFGMMLSQNLRKGTRGLTELLEREAEDAFEQRKNLAKKAGEEAGTK 399
Query: 298 LTVPMIIFFLPVLILVIIGPAILSI 322
L +P+ L ++ ++I PA SI
Sbjct: 400 LMIPL-FLMLIIVFAIVIVPAFFSI 423
>gi|315121887|ref|YP_004062376.1| pilus assembly protein [Candidatus Liberibacter solanacearum
CLso-ZC1]
gi|313495289|gb|ADR51888.1| pilus assembly protein [Candidatus Liberibacter solanacearum
CLso-ZC1]
Length = 328
Score = 91.9 bits (227), Expect = 1e-16, Method: Composition-based stats.
Identities = 41/279 (14%), Positives = 102/279 (36%), Gaps = 17/279 (6%)
Query: 48 VAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGF 107
+ E +++ +K+ + K LR+ + K+ L N + +
Sbjct: 32 LESSSESRDPKKVIKDKKNDTIPSAAVKRRKVLRDAMDKIELSHKEKFGNTKSLSSLISY 91
Query: 108 RS-EYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSV 166
+S + V+ ++F I+ + + ++ + P V
Sbjct: 92 SGIPFSKEHFYIFSCVMGLVFGIISLALFSSF-----------FVSLCVCLSSALVVPRV 140
Query: 167 WISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTI 226
+ L++KR + +P+ALD+++ V SG+ + A+ + G S P+ E +
Sbjct: 141 LLQYLIKKRTAKFLNEFPNALDIIVRSVRSGLPVSDAISIIV---GQSSDPVRSEFRRVV 197
Query: 227 AELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLME 286
+ + + V + + + G ++ ++L L R + M+
Sbjct: 198 EAQHLGLSVSESVARMVRYMPLQEVSFFSTVISIQAQSGGNLSEALSNLSGILRERKKMK 257
Query: 287 AEKKAASLGPKLTVPMI--IFFLPVLILVIIGPAILSII 323
+ +A ++ K + +I + F ++ P + I+
Sbjct: 258 GKVQALAMEAKSSAWIIGSLPFFVSSLVHFTSPGYIDIL 296
>gi|82703470|ref|YP_413036.1| type II secretion system protein [Nitrosospira multiformis ATCC
25196]
gi|82411535|gb|ABB75644.1| type II secretion system protein [Nitrosospira multiformis ATCC
25196]
Length = 323
Score = 91.9 bits (227), Expect = 1e-16, Method: Composition-based stats.
Identities = 51/320 (15%), Positives = 121/320 (37%), Gaps = 30/320 (9%)
Query: 9 FDATELAVAITTAVSIFSLIYAVVIPSLG-SGELEKRMKSVAVEREILRKQQITSLQKDS 67
D I +++ L+ + G KR++ R Q +++ D+
Sbjct: 1 MDILYYLFLIFCFLAVVLLLEGGYLAWHAHRGPEAKRIQE--------RLQAVSAGWGDA 52
Query: 68 ASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIF 127
+ ++ R + +++ L+ + + L+ +G + L + +
Sbjct: 53 ETGLMKQRLLSN-SPALERFLLQIPRIHS-LDRLLQQSGMS--LMVTHFLGYTAMTALGG 108
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
+ + L +L G G P + + +KR I+R P+ +
Sbjct: 109 MACAAL------------LGLPFAVTLLCGATGSVLPLFFTLSAKRKRLEKIERQLPEVI 156
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQ 247
DL+ +++G + AL+ + D P ++E LT E++F + Q A N R
Sbjct: 157 DLMARALKAGHAFSGALQMASTD---GPEPAADEFRLTFDEINFGVSVQDALMNLATRVP 213
Query: 248 MDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFL 307
+ +R A++ G ++ + L + R+ + + + S +L+ ++
Sbjct: 214 ITDLRYFVIAVLIQRESGGNLAELLDKISGLIRARLTLLGKIRVLSAEGRLSAWILSCLP 273
Query: 308 P--VLILVIIGPAILSIIDT 325
L++ ++ P L+++ T
Sbjct: 274 FATALMINLVNPGFLTVLWT 293
>gi|283779213|ref|YP_003369968.1| type II secretion system protein [Pirellula staleyi DSM 6068]
gi|283437666|gb|ADB16108.1| type II secretion system protein [Pirellula staleyi DSM 6068]
Length = 321
Score = 91.9 bits (227), Expect = 1e-16, Method: Composition-based stats.
Identities = 48/302 (15%), Positives = 115/302 (38%), Gaps = 26/302 (8%)
Query: 13 ELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRL 72
L + I + + + L+ V L + + +V +L + + A + +
Sbjct: 3 TLLILIASFIGVACLVGGVASMFLRTEQAT----AVEDRLAVLTGAAQPNTKGKQADTNV 58
Query: 73 RTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGI 132
+ + +++ K NI L+ A ++ S + +V ++ II +++
Sbjct: 59 LQTPLDDMPSVIEEYFSKYF----NIRAFLQQA--DTQLSPSRFFLVSVIAAIIGMVIVA 112
Query: 133 IWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLI 192
+ + +G + P +W +R + R P+AL+L+
Sbjct: 113 V-------------CRVPIYLAPLGAIMGVTPWIWFLMKRNRRLAHFARQLPEALELISR 159
Query: 193 CVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVR 252
+ +G S+ + VA+++GG P++ E + + A + R +R
Sbjct: 160 ALRAGHSLASGFKLVADELGG---PIAVEFERCYEAQNLGVPLEEAIDEMTVRVPNLDLR 216
Query: 253 NATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLIL 312
A+I + G + + L + R + + +A + +L+ +++ PVL +
Sbjct: 217 FFATAVILQRQTGGDLAEILDKIGHLVRERYKIWGQIQALTGEGRLSGIVLLALPPVLFV 276
Query: 313 VI 314
V+
Sbjct: 277 VM 278
>gi|51245381|ref|YP_065265.1| TadB [Desulfotalea psychrophila LSv54]
gi|50876418|emb|CAG36258.1| related to TadB [Desulfotalea psychrophila LSv54]
Length = 317
Score = 91.5 bits (226), Expect = 1e-16, Method: Composition-based stats.
Identities = 38/194 (19%), Positives = 91/194 (46%), Gaps = 4/194 (2%)
Query: 122 VVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKR 181
++ +F++ +++ + + + + + V P +W+ + ++R+ + +
Sbjct: 85 ILAGVFILSSLLFSAVAFLVSFFLLKNHIAVSVTAAAVALLLPFLWLLSKRRQRRINFEE 144
Query: 182 AWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFEN 241
+PDALDL+ +++G SI +L+ V+E++ P++EE + + E++F + N
Sbjct: 145 HFPDALDLMGYAMKAGHSIMASLKMVSEEM---PAPINEEFAIVVEEINFGKSIDSTLRN 201
Query: 242 FYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVP 301
F R +R ++I G ++ + L + + R + +A S KL+
Sbjct: 202 FAKRVDSTELRYFVTSVIVQRETGGNLVEILEKISAIIRKKFRFRERVRALSAEGKLSA- 260
Query: 302 MIIFFLPVLILVII 315
+I+ LP I + +
Sbjct: 261 IILVALPFCIALAV 274
>gi|254173151|ref|ZP_04879824.1| Bacterial type II secretion system protein F domain [Thermococcus
sp. AM4]
gi|214032560|gb|EEB73389.1| Bacterial type II secretion system protein F domain [Thermococcus
sp. AM4]
Length = 358
Score = 91.5 bits (226), Expect = 2e-16, Method: Composition-based stats.
Identities = 36/196 (18%), Positives = 84/196 (42%), Gaps = 4/196 (2%)
Query: 121 LVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIK 180
+ + I+ I + F + LLE F + +L GF + + ++R + ++
Sbjct: 119 VALMIVTSIFLGAFAFAFGLLLEMDFFTSMMLGLLGFIGGFLYMRNYPRIVWRRRVAEVE 178
Query: 181 RAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFE 240
+A P L + + +G+ I +AL VA+ SEE L + ++ + + A E
Sbjct: 179 KALPYVLRHIASLLSAGVGIAEALVSVAK---ADYGVASEEFELIVRDMRAGASFEEALE 235
Query: 241 NFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV 300
F + + V + ++++ ++G ++ + L + + E M+ + + +
Sbjct: 236 RFEEKMGSESVSRVVKQILRAIKFGGNLAEILYKMAEDFAFEYRMKLVEYVQKVNGIAFI 295
Query: 301 PMIIFF-LPVLILVII 315
M + +P + +V I
Sbjct: 296 YMFMTIVMPTMFIVAI 311
>gi|116626773|ref|YP_828929.1| type II secretion system protein [Candidatus Solibacter usitatus
Ellin6076]
gi|116229935|gb|ABJ88644.1| type II secretion system protein [Candidatus Solibacter usitatus
Ellin6076]
Length = 325
Score = 91.5 bits (226), Expect = 2e-16, Method: Composition-based stats.
Identities = 53/317 (16%), Positives = 126/317 (39%), Gaps = 34/317 (10%)
Query: 14 LAVAITTAVSIFSLIYAV--VIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSR 71
L V + ++++++ Y V V L R++ + ++ L++ S
Sbjct: 8 LIVGVLFSMALYAAGYYVWSVPEQEAEDRLNSRLRELRAHTRTRSEKAPELLRRTHRGSF 67
Query: 72 LRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILG 131
D + +++L + ++ N+ +R+ + +++ + ++ + G
Sbjct: 68 AFLGDLVTWVGVLRRL--QDLIEQANLK-------YRAADVFGVSVMLAVGTLLVLTLFG 118
Query: 132 IIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLL 191
++ LR+ IL+G+ P +I + +R + PDA+DL
Sbjct: 119 AMFF------------LRILFAILVGFT----PVFYILRVRGRRLHKFEEMLPDAIDLFT 162
Query: 192 ICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCV 251
+ +G +I L +A + S P+ E + EL+ + A R + +
Sbjct: 163 RTMRAGHNIHSGLETIATE---TSDPVKMEFKKLMEELALGSQVEPALHGLGKRVPLIDL 219
Query: 252 RNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLI 311
+ +LI + G ++ L L + R M A+ KA + + + + + LP+++
Sbjct: 220 KFFITSLILQRQTGANMVSVLENLSTLVRERLNMAAKMKAHTAQQRFSAGL-LCCLPLVV 278
Query: 312 LV---IIGPAILSIIDT 325
+ I+ P + ++ T
Sbjct: 279 GIGFWILKPEYVRLLWT 295
>gi|254255260|ref|ZP_04948576.1| Flp pilus assembly protein TadB [Burkholderia dolosa AUO158]
gi|124900997|gb|EAY71747.1| Flp pilus assembly protein TadB [Burkholderia dolosa AUO158]
Length = 325
Score = 91.5 bits (226), Expect = 2e-16, Method: Composition-based stats.
Identities = 55/292 (18%), Positives = 109/292 (37%), Gaps = 27/292 (9%)
Query: 18 ITTAVSIFSLIYAVVIPSLGS-GELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRD 76
I T V++ I G +R++S LR + S L+ R
Sbjct: 10 ILTFVAVVLAIEGAYQWWNARHGSAARRIES------RLRAMSAGGNVRQERLSILKKRM 63
Query: 77 SKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIF 136
+ F +L L+ V + L+ +G ++++ LLV+ V P+ ++
Sbjct: 64 LDESKPF-DRLLLRMPRV-HALDLMLQQSGL--DWTVPKLLVLSAVWPVC--------VW 111
Query: 137 GYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVES 196
P + AV+ C P +++ +R ++R PD D++ + S
Sbjct: 112 LALAFAALPLVAVLPAVLFAA----CVPMLYVMRCRGRRMRKLQRQLPDVCDMIARALRS 167
Query: 197 GISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQ 256
G S L V ++ P+ E +T E+++ A +N R +R
Sbjct: 168 GHSFTSTLGMVGDEFPD---PMGGEFRVTFDEVNYGVPLNDALKNLATRVPAQDLRYFVI 224
Query: 257 ALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP 308
A++ G ++ + L + + R + + + S +L+ I+ LP
Sbjct: 225 AVLIQRETGGNLAELLDSIAALIRERFKLFDKVRVLSAEGRLSA-WILGLLP 275
>gi|153812902|ref|ZP_01965570.1| hypothetical protein RUMOBE_03309 [Ruminococcus obeum ATCC 29174]
gi|149830980|gb|EDM86070.1| hypothetical protein RUMOBE_03309 [Ruminococcus obeum ATCC 29174]
Length = 289
Score = 91.5 bits (226), Expect = 2e-16, Method: Composition-based stats.
Identities = 36/172 (20%), Positives = 68/172 (39%), Gaps = 5/172 (2%)
Query: 132 IIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLL 191
+ +F +L + + VI V + + + + R+ I P L L
Sbjct: 102 VFLVFMLLSVLAGSVEAALLGVIFSVLVVMYI-DLSLQDKLTARRQEILMDLPQVLSKLT 160
Query: 192 ICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCV 251
+ V SG+ + A +R A L +EM T E+ A+ NF +R + V
Sbjct: 161 LLVNSGMVLRDAWKRTAI---TGERALYKEMQNTSLEIDNGIMEADAYRNFADRCSVKEV 217
Query: 252 RNATQALIQSDRYGT-SIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPM 302
R T ++Q+ + G + L + +E + E ++K +L +P+
Sbjct: 218 RKFTSLILQNLQKGNEELALFLGDMSTEMWEMKKNEVKQKGEKANSRLLLPV 269
>gi|254506705|ref|ZP_05118845.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus 16]
gi|219550286|gb|EED27271.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus 16]
Length = 322
Score = 91.5 bits (226), Expect = 2e-16, Method: Composition-based stats.
Identities = 52/283 (18%), Positives = 123/283 (43%), Gaps = 27/283 (9%)
Query: 18 ITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDS 77
I ++ + A+++P+ GS K++ R ++ + + A S L+
Sbjct: 10 ILLFFAVVFISQALILPAAGSKAKHKQLSQ--------RLKESQAKLDEEARSLLQEHYM 61
Query: 78 KSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFG 137
KSL ++L + + ++ + +G+ ++SL L V L++ + ++ ++
Sbjct: 62 KSLTPMDRRL--VKVPLFSSLKKTIELSGY--DWSLGQTLAVTLILSVCAFLIVLL---- 113
Query: 138 YDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESG 197
L PF + + A + I ++ + W++ + R +S + P+ALD++ +++G
Sbjct: 114 ----LGQPFYIGLAASVGIWFILYF----WLNKRISDRLASFEEQLPEALDIMRRMLQAG 165
Query: 198 ISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQA 257
+ QA V ++ P+ E T L+F + ++A RT + + A
Sbjct: 166 QPVTQAFNEVGNEMPD---PIGTEFKNTFNLLNFGYDMRMAIMQMAERTPTVSMLAFSSA 222
Query: 258 LIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV 300
++ G ++ ++L + RS ++ + K S +L+
Sbjct: 223 VLLQKETGGNLSENLEKVSKVLRSRFKLQRKIKTLSAESRLSA 265
>gi|304315118|ref|YP_003850265.1| hypothetical protein MTBMA_c13650 [Methanothermobacter marburgensis
str. Marburg]
gi|302588577|gb|ADL58952.1| putative membrane protein [Methanothermobacter marburgensis str.
Marburg]
Length = 313
Score = 91.1 bits (225), Expect = 2e-16, Method: Composition-based stats.
Identities = 40/214 (18%), Positives = 90/214 (42%), Gaps = 20/214 (9%)
Query: 114 NILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISN--- 170
+ + ++ + FL + + G + VIL VGF PS+ +
Sbjct: 35 GLYVKASEIITLAFLAGALFAVLG-----SVVAAVAGLNVILAVIVGFFMPSILLGAYIF 89
Query: 171 -LVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAEL 229
++++R +I+++ PD L + + +G+ ++ AL V++ G PL +E+ + E+
Sbjct: 90 VMMERRVDAIEQSTPDFLRQIASLLRAGVGLESALEDVSKQGEG---PLYDELKRAVIEI 146
Query: 230 SFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEK 289
A + R + + + +++ R G S+ D + + + R+ ++ E+
Sbjct: 147 KIGRTFDDAILSMSERLKSQNLDRTFRMILEGRRAGGSLSDVIETVAEDLRAVLALKRER 206
Query: 290 KAASLGPKLTVPMIIFFLPVLILVIIGPAILSII 323
KA M+ ++ +I P L +I
Sbjct: 207 KAN--------VMMSVMFLIVAAIIAAPFALGMI 232
>gi|315231662|ref|YP_004072098.1| hypothetical protein TERMP_01900 [Thermococcus barophilus MP]
gi|315184690|gb|ADT84875.1| hypothetical protein TERMP_01900 [Thermococcus barophilus MP]
Length = 353
Score = 91.1 bits (225), Expect = 2e-16, Method: Composition-based stats.
Identities = 41/195 (21%), Positives = 79/195 (40%), Gaps = 3/195 (1%)
Query: 121 LVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIK 180
+ + I I+ I+ F LL P + V +L GF + + + R + ++
Sbjct: 119 VALMIGVSIISSIFTFLVGVLLMLPVDVSVLLALLGFIGGFLYMRNYPRIVWKHRVAEVE 178
Query: 181 RAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFE 240
RA P L L + +G+ I +A+ VA +SEE L I ++ + + A
Sbjct: 179 RAMPYVLRHLASLLSAGVGIAEAILSVAN---SDYGVISEEFELIIRDMRGGASFEEALT 235
Query: 241 NFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV 300
F R + V + ++++ ++G ++ L L + E M + + V
Sbjct: 236 RFEERMASENVSRVVKQMLRAVKFGGNLSGILYKLAEDFSFEYRMRLVEYVQKVNGLAFV 295
Query: 301 PMIIFFLPVLILVII 315
M I + +LV+
Sbjct: 296 YMFISVVMPTMLVVA 310
>gi|323499917|ref|ZP_08104876.1| Flp pilus assembly protein TadB [Vibrio sinaloensis DSM 21326]
gi|323315158|gb|EGA68210.1| Flp pilus assembly protein TadB [Vibrio sinaloensis DSM 21326]
Length = 322
Score = 91.1 bits (225), Expect = 2e-16, Method: Composition-based stats.
Identities = 51/283 (18%), Positives = 119/283 (42%), Gaps = 27/283 (9%)
Query: 18 ITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDS 77
I ++ + A+++P+ GS K++ R + + + A S L+
Sbjct: 10 ILLFFAVVFISQALILPAAGSKAKHKQLSQ--------RLKDSQANLDEEARSLLQEHYM 61
Query: 78 KSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFG 137
KSL ++L + ++ + +G+ ++SL+ L V ++ I ++ ++
Sbjct: 62 KSLTPMDRRLVKYELF--SSLKKTIELSGY--DWSLSQTLAVTFILSICAFMVVLL---- 113
Query: 138 YDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESG 197
+ PF + + + I I + + W++ + R S + P+ALD++ +++G
Sbjct: 114 ----IGQPFYVGIASSIGIWAILYF----WLNKRISDRLSQFEEQLPEALDIMRRMLQAG 165
Query: 198 ISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQA 257
+ QA V ++ P+ E T L+F + ++A RT + + A
Sbjct: 166 QPVTQAFNEVGNEMPD---PIGTEFKNTFNLLNFGYDMRMAIMQMAERTPTVSMLAFSSA 222
Query: 258 LIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV 300
++ G ++ ++L + RS ++ + K S +L+
Sbjct: 223 VLLQKETGGNLSENLEKVSRVLRSRFKLQRKIKTLSAESRLSA 265
>gi|157375502|ref|YP_001474102.1| Flp pilus assembly protein TadB [Shewanella sediminis HAW-EB3]
gi|157317876|gb|ABV36974.1| conserved hypothetical Flp pilus assembly protein TadB [Shewanella
sediminis HAW-EB3]
Length = 325
Score = 91.1 bits (225), Expect = 2e-16, Method: Composition-based stats.
Identities = 60/304 (19%), Positives = 119/304 (39%), Gaps = 24/304 (7%)
Query: 11 ATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASS 70
+ E+ +++ L A+ +P A+ R+ L++ S + +S
Sbjct: 3 SNEIIFLGLIFLAVILLSQALFLPVYSPQRANT-----ALVRKRLKQLSKNSDDSEFETS 57
Query: 71 RLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLIL 130
LR + L F + L I EN+ +L A + + + ++ LV II
Sbjct: 58 LLRKSKLQKLNRFGRALE--KIEFIENLSYRLELADY--KMMGHHFFLLALVTSII---- 109
Query: 131 GIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLL 190
LL + F + + V + +S KR +I+ ++PDALD++
Sbjct: 110 --------TGLLTWQFTREPIITVFVMAVTLMLFHIKLSRDTNKRMDAIEASFPDALDVV 161
Query: 191 LICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDC 250
+++G S A++ E++ G P+++E L A +++ + + A F R
Sbjct: 162 RRALQAGYSFSDAIKLATEELEG---PIAKEFKLMFANINYTKDVKRALLGFIERVPSIS 218
Query: 251 VRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVL 310
A++ G ++ +++ L R K S +L+ ++I VL
Sbjct: 219 AMAFASAVMVQKETGGNLAENIESLSRVIRERFTFRRRVKTLSAEGRLSAWILILLPFVL 278
Query: 311 ILVI 314
VI
Sbjct: 279 FAVI 282
>gi|219883049|ref|YP_002478213.1| type II secretion system protein [Arthrobacter chlorophenolicus A6]
gi|219862055|gb|ACL42396.1| type II secretion system protein [Arthrobacter chlorophenolicus A6]
Length = 309
Score = 91.1 bits (225), Expect = 2e-16, Method: Composition-based stats.
Identities = 43/230 (18%), Positives = 85/230 (36%), Gaps = 6/230 (2%)
Query: 87 LNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPF 146
L+ + I L G+ S+ + ++ P FLIL ++
Sbjct: 44 LSRMTGITSSTIEEVLNRRGWTRAISVALEHAGLVIAPADFLILAGAACLV--AIICGAL 101
Query: 147 QLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRR 206
+ +++S L KR+ D+L LL + +G S+ +A+
Sbjct: 102 LGGPLLGLFGALACALGVKMYLSFLAGKRRKKFADQLDDSLQLLSGGLRAGHSLQRAVDA 161
Query: 207 VAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGT 266
V++ P +EE + E + A + R + + +QA+ G
Sbjct: 162 VSQQ---APSPTAEEFSRIMNETRIGRDLTDAMDQTAERMKSEDFSWVSQAIGIHREVGG 218
Query: 267 SIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIG 316
+ D L + R ++ + KA S K++ ++ LPVLI+ ++
Sbjct: 219 DLADVLDQVGRTIRERNQIQRQVKALSAEGKMSA-YVLMALPVLIIGVLA 267
>gi|288559927|ref|YP_003423413.1| type II secretion system protein F GspF2 [Methanobrevibacter
ruminantium M1]
gi|288542637|gb|ADC46521.1| type II secretion system protein F GspF2 [Methanobrevibacter
ruminantium M1]
Length = 309
Score = 90.7 bits (224), Expect = 3e-16, Method: Composition-based stats.
Identities = 35/203 (17%), Positives = 85/203 (41%), Gaps = 14/203 (6%)
Query: 121 LVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIK 180
+ + I ++ +I L + + + I I + F ++ ++R+ ++
Sbjct: 43 IAILFISIVFTLILALMIALLFSFDILMAILLAIFIPLLSFIL---FVFIKSERRREELE 99
Query: 181 RAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFE 240
+ PD L L + G+S++ AL ++E G PL +E+ + E+ + +F
Sbjct: 100 NSIPDFLRQLASMLRVGMSLENALVDLSEHGNG---PLYDELRRVVVEIRMGKSFDESFR 156
Query: 241 NFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV 300
N R + + + ++ + + G + D + + + R+ +++ E+K +
Sbjct: 157 NMAKRLDSKDLERSFKIILNAHKSGGGLADVISDVSDDLRAMLILKRERK--------SS 208
Query: 301 PMIIFFLPVLILVIIGPAILSII 323
M+ VL V+ P L ++
Sbjct: 209 VMMSIMFLVLASVVAAPFALGMV 231
>gi|156741662|ref|YP_001431791.1| type II secretion system protein [Roseiflexus castenholzii DSM
13941]
gi|156232990|gb|ABU57773.1| type II secretion system protein [Roseiflexus castenholzii DSM
13941]
Length = 327
Score = 90.7 bits (224), Expect = 3e-16, Method: Composition-based stats.
Identities = 43/311 (13%), Positives = 105/311 (33%), Gaps = 28/311 (9%)
Query: 19 TTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSK 78
+IF +I AV + ER + T + SA +LR D
Sbjct: 11 IAPAAIFVVILAVFALLARRSAGN----ASYEERLTQFAGRRTDQLQRSAKDQLREIDKV 66
Query: 79 SLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGY 138
R L A + ++ ++L+ + +G
Sbjct: 67 VAR----------GKRGSETQRNLARADL--KLTVTEFYAIKLLAAAVGAAVGAF----- 109
Query: 139 DKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGI 198
+ ++ ++ + I+ + P +++ ++R + D +++L + SG
Sbjct: 110 --IGRASWEAQLLSGIVGFALFSFFPDLYVGYAAKQRVTKFNAQLGDTINMLANSLRSGY 167
Query: 199 SIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQAL 258
S+ Q++ V+ + P + E + E+ + A +N R + + A+
Sbjct: 168 SLLQSMELVSRE---APEPTASEYRRVVQEVGLGLRTEDALDNLLKRVPSEDLDLLITAV 224
Query: 259 IQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMI--IFFLPVLILVIIG 316
G ++ L + R ++ E + +++ +I + + + +I
Sbjct: 225 KIQMESGGNLAQILDTIGHTIRERIRIKGEIAVLTAQGRISAYVITGLPIGLAIFITVIN 284
Query: 317 PAILSIIDTMK 327
P +S + +
Sbjct: 285 PNYMSPMFSFG 295
>gi|77919351|ref|YP_357166.1| Flp pilus assembly protein TadB [Pelobacter carbinolicus DSM 2380]
gi|77545434|gb|ABA88996.1| Flp pilus assembly protein TadB [Pelobacter carbinolicus DSM 2380]
Length = 325
Score = 90.7 bits (224), Expect = 3e-16, Method: Composition-based stats.
Identities = 36/165 (21%), Positives = 66/165 (40%), Gaps = 3/165 (1%)
Query: 152 AVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDI 211
I + + FC P ++ + + P+ALDLL + SG ++ L VA ++
Sbjct: 123 ITIALAILIFCLPFAYLKLAENTYHARFQDQLPEALDLLARALRSGHAMTSGLEMVAAEM 182
Query: 212 GGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDS 271
P+S E + E++ Q AFEN R +R ++I G ++ +
Sbjct: 183 ---DPPISSEFGAAVDEINLGLTFQEAFENLCERVPSTDLRFFAISVIIQRETGGNVAEI 239
Query: 272 LRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIG 316
L + R + + KA + +L+ ++I L I
Sbjct: 240 LDSISRLIRERIQFKRQVKALTAEGRLSAMVLIGLPIALFGYIFF 284
>gi|239629080|ref|ZP_04672111.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
gi|239519226|gb|EEQ59092.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
Length = 418
Score = 90.7 bits (224), Expect = 3e-16, Method: Composition-based stats.
Identities = 41/192 (21%), Positives = 83/192 (43%), Gaps = 10/192 (5%)
Query: 140 KLLEYPFQLRVGAVILIGYVGFCAPSVW-ISNLVQKRQSSIKRAWPDALDLLLICVESGI 198
+ + P L + + + V + KR+ + + + L L+I + +G+
Sbjct: 227 HMKDDPVFLPLAGLGAVFAVLLTLKDQSDVKKDENKRKHQLLLDYSEVLSRLIIFLGAGM 286
Query: 199 SIDQALRRVA-------EDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCV 251
SI A +VA +D + +EM T ++ AF +F R +
Sbjct: 287 SIRTAWDKVAFDYQKLVDDGKQKPRYAYQEMYETSCQMRGGVPEGRAFMDFGRRCGLQQY 346
Query: 252 RNATQALIQSDRYGT-SIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVL 310
+ L Q+ + G+ ++ D+L+V ++E +R +A + G KL +P+ L V+
Sbjct: 347 MKLSSLLEQNRKNGSKNLRDTLKVEMAEAFEQRKHQARRLGEEAGTKLLLPL-FMMLSVV 405
Query: 311 ILVIIGPAILSI 322
++VI PA++
Sbjct: 406 MVVIAVPALMEF 417
>gi|254229336|ref|ZP_04922753.1| bacterial type II secretion system protein F domain [Vibrio sp.
Ex25]
gi|262393423|ref|YP_003285277.1| flp pilus assembly protein TadB [Vibrio sp. Ex25]
gi|151938144|gb|EDN56985.1| bacterial type II secretion system protein F domain [Vibrio sp.
Ex25]
gi|262337017|gb|ACY50812.1| flp pilus assembly protein TadB [Vibrio sp. Ex25]
Length = 322
Score = 90.7 bits (224), Expect = 3e-16, Method: Composition-based stats.
Identities = 51/301 (16%), Positives = 122/301 (40%), Gaps = 35/301 (11%)
Query: 30 AVVIPSLGSGELEKRM-KSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLN 88
A+++PS G K++ K + + + ++ I+ L+++S ++ L ++ + +
Sbjct: 22 ALILPSAGKKVKHKQLIKRIHESHKHIDQESISLLRENSL------KNLSPLERWLVRFS 75
Query: 89 LKAILVDENIVNKLRAAGFRSEYSLNILLVV--RLVVPIIFLILGIIWIFGYDKLLEYPF 146
L +N KL AG +S I L + V + + G +W
Sbjct: 76 LF-----DNFKKKLELAGIHMGFSRFIFLTFLGGVAVGLFLFLFGQVWYL---------- 120
Query: 147 QLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRR 206
+ + + ++ + R + P+ALD++ +++G I QA
Sbjct: 121 ------CAGVAVACWVSVYFYLQKRIADRLMKFEEQLPEALDIIKRVLQAGQPITQAFGE 174
Query: 207 VAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGT 266
V ++ S PL E + T L++ + ++A RT + + A++ G
Sbjct: 175 VGREV---SAPLGPEFMNTFNLLNYGYDLRLAIMQMSERTPTVSMLAFSSAVLLQKETGG 231
Query: 267 SIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVI--IGPAILSIID 324
++ +++ L R+ + + K S +++ +++ L ++I + P + ++
Sbjct: 232 NLVENIEKLSHILRARFKLARKIKTISAESRMSAWVLVLAPFGLYVIISLVRPEYIELLH 291
Query: 325 T 325
T
Sbjct: 292 T 292
>gi|307726637|ref|YP_003909850.1| type II secretion system F domain-containing protein [Burkholderia
sp. CCGE1003]
gi|307587162|gb|ADN60559.1| Type II secretion system F domain protein [Burkholderia sp.
CCGE1003]
Length = 282
Score = 90.7 bits (224), Expect = 3e-16, Method: Composition-based stats.
Identities = 39/212 (18%), Positives = 84/212 (39%), Gaps = 7/212 (3%)
Query: 103 RAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFC 162
+ AG + + V + +L I+ + +L + ++ V
Sbjct: 35 QMAGEIESSLADTFVFVSRQKAAAWSMLVIVGLPVLVFVLSRSLIIAAASIP----VAMM 90
Query: 163 APSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEM 222
P + + +KR I++ PDAL ++ + +G S AL V + P+S+E
Sbjct: 91 LPRKYFERMRKKRIEVIEQQLPDALLMMSGALRAGASFPTALEAVVHE---TPPPISQEF 147
Query: 223 LLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSE 282
L + E+ + +A N R + T A+ + G ++ ++L + R +
Sbjct: 148 DLLMREIRLGIDLDIAMRNVEKRIPVPDFLMMTAAVTIAREVGGNLAEALESVARTLREK 207
Query: 283 RLMEAEKKAASLGPKLTVPMIIFFLPVLILVI 314
ME + +A + ++ ++ L+LV+
Sbjct: 208 LTMEGKIRALTSQGRMQGIVMTCLPLFLMLVL 239
>gi|18977365|ref|NP_578722.1| hypothetical protein PF0993 [Pyrococcus furiosus DSM 3638]
gi|18893046|gb|AAL81117.1| hypothetical protein PF0993 [Pyrococcus furiosus DSM 3638]
Length = 355
Score = 90.7 bits (224), Expect = 3e-16, Method: Composition-based stats.
Identities = 37/197 (18%), Positives = 86/197 (43%), Gaps = 6/197 (3%)
Query: 121 LVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIK 180
+ + + IL I+ F + +L P + + +L GF + + ++R + ++
Sbjct: 121 VALMLGVAILVGIFSFAFSLILYLPIDISILVSLLGFIGGFWYMRYYPRVVWRRRVAEVE 180
Query: 181 RAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFE 240
+A P L + + +GI I +A VA+ +SEE L + ++ + + A
Sbjct: 181 KALPYVLRHIASLLSAGIGIAEAFVSVAK---ADYGVISEEFYLIVQDMHKGASFEDALS 237
Query: 241 NFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV 300
F + + V T+ ++++ ++G ++ D L + E E ++ + + L+
Sbjct: 238 KFEMKMASENVTRVTKQILRAIKFGGNLADILYKMADEFAFEYRLKLMEYVQKING-LSF 296
Query: 301 PMIIF--FLPVLILVII 315
+ +P L +V+I
Sbjct: 297 VYMFLSVIMPTLFIVVI 313
>gi|323529157|ref|YP_004231309.1| Type II secretion system F domain-containing protein [Burkholderia
sp. CCGE1001]
gi|323386159|gb|ADX58249.1| Type II secretion system F domain protein [Burkholderia sp.
CCGE1001]
Length = 282
Score = 90.7 bits (224), Expect = 3e-16, Method: Composition-based stats.
Identities = 33/156 (21%), Positives = 68/156 (43%), Gaps = 3/156 (1%)
Query: 159 VGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPL 218
+ P + + +KR +I++ PDAL ++ + +G S AL V + P+
Sbjct: 87 IAMMLPRKYFKRMHKKRVEAIEKQLPDALLMMSGALRAGASFPTALEAVVHE---TPPPI 143
Query: 219 SEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSE 278
S+E L + E+ + +A N R + T A+ + G ++ ++L +
Sbjct: 144 SQEFDLLMREIRLGIDLDIAMRNVEKRIPIPDFLMMTAAVTIAREVGGNLAEALESVART 203
Query: 279 TRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVI 314
R + ME + KA + ++ ++ L+LV+
Sbjct: 204 LREKLTMEGKIKALTSQGRMQGIVMTCLPLFLMLVL 239
>gi|187251610|ref|YP_001876092.1| TadB [Elusimicrobium minutum Pei191]
gi|186971770|gb|ACC98755.1| TadB [Elusimicrobium minutum Pei191]
Length = 535
Score = 90.7 bits (224), Expect = 3e-16, Method: Composition-based stats.
Identities = 36/192 (18%), Positives = 84/192 (43%), Gaps = 6/192 (3%)
Query: 125 IIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWP 184
+IF + G ++ + L + + G P + NL ++R + I
Sbjct: 308 LIFAVFGALFGYAVGGFTGVIVFLLILGLGAKVSKGM--PGTVLKNLKRRRGTKINNQLM 365
Query: 185 DALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYN 244
D+L LL +++G+ I QA V++D+ P+++E L I + + A E +
Sbjct: 366 DSLILLSNSLKAGMDIVQAFEMVSKDMK---PPIADEFGLVIKNYQLGSSFEQALEMMED 422
Query: 245 RTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMII 304
R + + +A++ + G ++ +V R E +E + +A + ++ +++
Sbjct: 423 RVENRLLSYMIKAIVLQRQVGGNLTKIFERIVETIREESKLEEKLQAMTAQQRIQS-IVV 481
Query: 305 FFLPVLILVIIG 316
+P L++ ++
Sbjct: 482 GIMPWLMISVMF 493
>gi|170725111|ref|YP_001759137.1| type II secretion system protein [Shewanella woodyi ATCC 51908]
gi|169810458|gb|ACA85042.1| type II secretion system protein [Shewanella woodyi ATCC 51908]
Length = 283
Score = 90.3 bits (223), Expect = 3e-16, Method: Composition-based stats.
Identities = 43/209 (20%), Positives = 87/209 (41%), Gaps = 5/209 (2%)
Query: 107 FRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSV 166
F S N+ + + P +L +I +F ++ +I+ + F P
Sbjct: 37 FTSSAKTNLFDMFLFIEPKQLFMLNMITLFSVPFIVRIFLGSWALGIIISIVLAFI-PRF 95
Query: 167 WISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTI 226
L ++R+ PDAL+++ ++SG ++ A+ ++E++ P+ +E L
Sbjct: 96 AYKFLHKRRRRKFVHQLPDALNMIASSMQSGANVSTAIEFMSEEMQA---PIKQEFQLFQ 152
Query: 227 AELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLME 286
E A +N Y R D + T + S G ++ + L L S R + ME
Sbjct: 153 REQRLGVEFNTALDNMYKRIPEDEFQLVTAGMQISREVGGNLAEVLFRLSSTLRRKIEME 212
Query: 287 AEKKAASLGPKLTVPMIIFFLPVLILVII 315
+ A + K+ +++ LP+ I ++
Sbjct: 213 GKIDALTSQGKMQG-IVMTMLPLFIGFVL 240
>gi|54302282|ref|YP_132275.1| Flp pilus assembly protein TadB [Photobacterium profundum SS9]
gi|46915704|emb|CAG22475.1| hypothetical Flp pilus assembly protein TadB [Photobacterium
profundum SS9]
Length = 288
Score = 90.3 bits (223), Expect = 4e-16, Method: Composition-based stats.
Identities = 45/254 (17%), Positives = 97/254 (38%), Gaps = 19/254 (7%)
Query: 61 TSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVR 120
+ + S LR L +KL V E + L AG + I
Sbjct: 11 ETGNGQNQQSLLRKHYLDKLTPTERKLE--NNAVGEYLSEHLTLAGLEWKAYKTIFW--- 65
Query: 121 LVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIK 180
+I I + + IL+ ++ + + W+ +KR +
Sbjct: 66 -----------LIIISIVAAPITLVLTKSIIFSILVPFITVLSFTFWLKYKAEKRLCLFE 114
Query: 181 RAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFE 240
+ +ALD++ + G + ++ V++++ P+S E T +EL++ + +VA
Sbjct: 115 EQFVEALDVMKRALLVGYPFTEVMKTVSQEM---PAPISVEFGKTFSELNYGVDIKVALA 171
Query: 241 NFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV 300
N R V A+I G ++ ++L L R + + ++ S +++
Sbjct: 172 NLAQRNPSISVLAFNSAVIIQKETGGNLAETLENLSEVIRGRFRLLRKVRSLSAEGRMSA 231
Query: 301 PMIIFFLPVLILVI 314
+++ VL+++I
Sbjct: 232 WILMCVPFVLVIMI 245
>gi|89899610|ref|YP_522081.1| type II secretion system protein [Rhodoferax ferrireducens T118]
gi|89344347|gb|ABD68550.1| type II secretion system protein [Rhodoferax ferrireducens T118]
Length = 322
Score = 90.3 bits (223), Expect = 4e-16, Method: Composition-based stats.
Identities = 60/320 (18%), Positives = 122/320 (38%), Gaps = 31/320 (9%)
Query: 9 FDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSA 68
D + + A+ +++ + V E K +A E L + + +
Sbjct: 1 MDLSFVLFAVVAFLAVVLALEGVYNVWASRSSPE--AKRIATRIEAL------AGEASAP 52
Query: 69 SSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFL 128
+S RTR + L AG R ++ + + +I +
Sbjct: 53 ASIERTRQRSRMPRLNGLLG-------------GLPAGRRMQHFVTASAMAVSAAELIVM 99
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
+ + FG L GAV+ +G P ++N + R I+R +P+ALD
Sbjct: 100 SVAL-GAFGLFLPGLLGKPLIFGAVLGLGLA--VLPWWRVANRRRVRIERIERQFPEALD 156
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
L+ + +G S A++ VA+++ PL + + E+++ A N R +
Sbjct: 157 LMSRAMRAGHSFPSAVKMVADEMTD---PLGHDFRVLFDEMNYGVPTNDALANLAERVPV 213
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP 308
V A++ G ++ + L + R + E + S KL+ +I+ LP
Sbjct: 214 PDVSYFVVAVMIQRESGGNLAELLDKISLIVRERLKLLGEVRTLSAEGKLSA-IILTALP 272
Query: 309 ---VLILVIIGPAILSIIDT 325
L++ ++ P ++++ T
Sbjct: 273 FGVGLVVNLVNPKFMAVLWT 292
>gi|17545370|ref|NP_518772.1| tight adherence TadB-related transmembrane protein [Ralstonia
solanacearum GMI1000]
gi|17427662|emb|CAD14181.1| probable pilus assembly tadb transmembrane protein [Ralstonia
solanacearum GMI1000]
Length = 325
Score = 90.3 bits (223), Expect = 4e-16, Method: Composition-based stats.
Identities = 54/319 (16%), Positives = 122/319 (38%), Gaps = 27/319 (8%)
Query: 9 FDATELAVAITTAVSIFSLIYAVV-IPSLGSGELEKRMKSVAVEREILRKQQITSLQKDS 67
+ + ++ V+I + S + +R+ + E + ++ S
Sbjct: 1 MNTLMIGFLLSVFVAIALGVLGAYQWWSTHRSQTARRL---SHRLETALLNSASHNKEAS 57
Query: 68 ASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIF 127
+ DS +++L + +VD L +G ++S+ LL + L I
Sbjct: 58 ILKQRVLSDSPEFARLLQRL-PRIDMVD----RFLLQSGL--DWSVGRLLGLSLASAAI- 109
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
+ G++W+ A + I +G P +++ KR ++ P+A
Sbjct: 110 -VGGLVWLLHP----------LWVAQLSITLMGASLPLLYVLRCRAKRLLRLEEQLPEAA 158
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQ 247
DLL + +G S+ AL ++ P+ E+ L +E+++ A +R
Sbjct: 159 DLLSRALRAGHSLPSALDMAGSEL---PAPIGAELALVFSEINYGVPMNDALAGLTDRVP 215
Query: 248 MDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFL 307
++ + A++ G ++ + L + S R + + + S ++ I+ L
Sbjct: 216 IEDLHYLVIAVLIQRESGGNLAEILDNVGSLIRKRLQLLDKVRVLSAEGRM-GGWILTLL 274
Query: 308 PVLILVIIGPAILSIIDTM 326
P ++ VI+ +I T+
Sbjct: 275 PPVVGVIVYELNPDLISTL 293
>gi|332798624|ref|YP_004460123.1| Type II secretion system F domain-containing protein
[Tepidanaerobacter sp. Re1]
gi|332696359|gb|AEE90816.1| Type II secretion system F domain protein [Tepidanaerobacter sp.
Re1]
Length = 309
Score = 90.3 bits (223), Expect = 4e-16, Method: Composition-based stats.
Identities = 31/176 (17%), Positives = 75/176 (42%), Gaps = 3/176 (1%)
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
+L I++ +L Y V + + +G P +++ + K+Q ++ DAL
Sbjct: 83 FVLTWIFLAVVPAVLLYTITESVIRSMALVLIGAIIPPLYLKMSINKKQIQFEKQLGDAL 142
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQ 247
+L + +G S+ QA+ +A+D+ PL E EL + + +R +
Sbjct: 143 QILANGLRAGFSLTQAIESLAKDMPD---PLGSEFRTASRELLLGMDIETVLSKIADRMK 199
Query: 248 MDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMI 303
+ +R T A++ + G ++ + L + R ++ + + +++ ++
Sbjct: 200 SEDMRLLTAAVVIQLQVGGNLAEILDNISQTIRDRLAIKRSVRTLTAQGRISGQIV 255
>gi|15678998|ref|NP_276115.1| hypothetical protein MTH980 [Methanothermobacter thermautotrophicus
str. Delta H]
gi|2622079|gb|AAB85476.1| conserved protein [Methanothermobacter thermautotrophicus str.
Delta H]
Length = 313
Score = 90.3 bits (223), Expect = 4e-16, Method: Composition-based stats.
Identities = 43/214 (20%), Positives = 89/214 (41%), Gaps = 20/214 (9%)
Query: 114 NILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISN--- 170
+ + +V + FL I + L +VIL VGF PS+ +
Sbjct: 35 GLYVKASEIVTLAFLGGAIFAVLA-----SVVAALLGLSVILAVLVGFSLPSIMLGAYIF 89
Query: 171 -LVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAEL 229
++++R +I+++ PD L + + +G+ ++ AL V+ G PL +E+ + E+
Sbjct: 90 IMMERRVDAIEQSTPDFLRQIASLLRAGVGLESALEDVSRQGEG---PLYDELKRAVIEI 146
Query: 230 SFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEK 289
A + R + + + +++ R G S+ D + + + R+ ++ E+
Sbjct: 147 KIGRTFDEAILSMSERLKSKNLDRTFRMILEGRRAGGSLSDVIETVAEDLRAVLALKRER 206
Query: 290 KAASLGPKLTVPMIIFFLPVLILVIIGPAILSII 323
KA M+ V+ +I P L +I
Sbjct: 207 KAN--------VMMSVMFLVVAAIIAAPFALGMI 232
>gi|86360588|ref|YP_472476.1| putative tadB pilus assembly protein [Rhizobium etli CFN 42]
gi|86284690|gb|ABC93749.1| putative tadB pilus assembly protein [Rhizobium etli CFN 42]
Length = 317
Score = 90.3 bits (223), Expect = 4e-16, Method: Composition-based stats.
Identities = 31/177 (17%), Positives = 72/177 (40%), Gaps = 3/177 (1%)
Query: 127 FLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDA 186
F + I ++++ + V + + AP++ + +R + P+A
Sbjct: 90 FALFAIAGALLTWLVIQFLVPSTLFRVPVFLLICLLAPALVVWRARARRMKKFELKLPEA 149
Query: 187 LDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRT 246
LD+ + +G + A+ VA ++ P+ E L EL++ A N +R
Sbjct: 150 LDVANRSLAAGHPLPAAIALVAREMPD---PIGTEFGLLSDELTYGVTLDDALVNLADRV 206
Query: 247 QMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMI 303
++ + +L G ++ + L+ L R +++A+ +A S ++T +
Sbjct: 207 GVEDLNLLAISLSVQAGTGGNLVEILQNLSKTLRGRTMLKAKVRAISSEGRITAIFM 263
>gi|302669442|ref|YP_003829402.1| Flp pilus assembly protein TadC [Butyrivibrio proteoclasticus B316]
gi|302393915|gb|ADL32820.1| Flp pilus assembly protein TadC [Butyrivibrio proteoclasticus B316]
Length = 486
Score = 89.9 bits (222), Expect = 4e-16, Method: Composition-based stats.
Identities = 33/158 (20%), Positives = 68/158 (43%), Gaps = 11/158 (6%)
Query: 149 RVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVA 208
+ +++ G F ++ ++KR + + +P + +++ + +G+++ + +++
Sbjct: 307 LLFILLIAGAASFVLKDKELAKQIEKRNEGLLKDYPGLVSQMVLYLGAGMTMRNIIGKLS 366
Query: 209 EDIGGQSVP------LSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSD 262
E+ + EE+L T EL+ + A+E F R + L Q+
Sbjct: 367 ENYVAKLKAGQEKSFAYEELLRTTRELAAGKSESDAYEEFGYRCGGQQYTRLSTLLSQNL 426
Query: 263 RYGTSIGDSLRVLVSETR---SERLMEAEKKAASLGPK 297
R G S + LR+L E R +RL A K G K
Sbjct: 427 RKGNS--ELLRLLNEEARKSQEDRLDRARKAGEEAGTK 462
>gi|57641787|ref|YP_184265.1| hypothetical protein TK1852 [Thermococcus kodakarensis KOD1]
gi|57160111|dbj|BAD86041.1| hypothetical membrane protein, conserved [Thermococcus kodakarensis
KOD1]
Length = 351
Score = 89.9 bits (222), Expect = 4e-16, Method: Composition-based stats.
Identities = 46/284 (16%), Positives = 121/284 (42%), Gaps = 9/284 (3%)
Query: 37 GSGELEKRMKSV-AVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVD 95
+++R+K++ +++E+ R+++ ++ + + R + + F ++L +
Sbjct: 27 EGKNVQERLKALKELQKELEREKEQKDERETFIEAVIEQRKEEVQQPFAQRLASAILKYF 86
Query: 96 ENIVNKLR--AAGFRSEYSLNILLVVR---LVVPIIFLILGIIWIFGYDKLLEYPFQLRV 150
V +L +G + + + + + + ++ + F + L+ P + +
Sbjct: 87 RGPVERLTTSLSGLDVDLYRANITMSKEAYVAYMLGVAMITAFFGFVFAYLMYLPIDISL 146
Query: 151 GAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAED 210
A L GF + + ++R +++A P AL + + +G+ I +A+ VA+
Sbjct: 147 LAGFLGFLGGFFYMRYYPKMVWKRRVREVEKALPYALRHIASLLSAGVGIAEAMLSVAK- 205
Query: 211 IGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGD 270
PLSEE L I ++ + + A F + + V + ++++ ++G ++ +
Sbjct: 206 --ADYGPLSEEFELVIRDMRTGSSFEEAMLKFEEKMASENVSRVVKQILRAVKFGGNLAE 263
Query: 271 SLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVI 314
L L + E M+ + + V M + + +LV+
Sbjct: 264 ILYKLAEDFAFEYRMKLVEYVQKVNGISFVYMFMTIVMPTMLVV 307
>gi|42521750|ref|NP_967130.1| hypothetical protein Bd0110 [Bdellovibrio bacteriovorus HD100]
gi|39574280|emb|CAE77784.1| TadB [Bdellovibrio bacteriovorus HD100]
gi|51468908|emb|CAE47781.1| flp pilus assembling protein [Bdellovibrio bacteriovorus]
Length = 291
Score = 89.9 bits (222), Expect = 4e-16, Method: Composition-based stats.
Identities = 36/209 (17%), Positives = 89/209 (42%), Gaps = 9/209 (4%)
Query: 120 RLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSI 179
++ + I+ + G+ + GA I + G+ P + + + ++R +
Sbjct: 59 KVTLIILLMSFGLGALVFLIFWPSVLMGAFFGASITVA--GWQLPLLLVRMIYEQRCTKF 116
Query: 180 KRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAF 239
D L ++ +++G + ++++RV E +G P+S+E + ++ + + A
Sbjct: 117 VDQMVDGLTIMANGIKAGSNPQESMKRVVEIMGN---PMSQEFAQVLYQMQVGDSFESAL 173
Query: 240 ENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKL- 298
+ NR V+ ++ G ++ ++ + +V R + +E + +A + +
Sbjct: 174 NDLGNRIPRPDVQMFVTSINILKETGGNLAETFQTIVLVVRERQKVEKKIQALTAQGMMQ 233
Query: 299 --TVPMIIFFLPVLILVIIGPAILSIIDT 325
V +I F L + LVI PA + +
Sbjct: 234 GIIVTLIPFILMAVFLVI-DPAFIKPMFN 261
>gi|322419940|ref|YP_004199163.1| Type II secretion system F domain-containing protein [Geobacter sp.
M18]
gi|320126327|gb|ADW13887.1| Type II secretion system F domain protein [Geobacter sp. M18]
Length = 321
Score = 89.9 bits (222), Expect = 5e-16, Method: Composition-based stats.
Identities = 55/301 (18%), Positives = 115/301 (38%), Gaps = 36/301 (11%)
Query: 20 TAVSIFSLIYAVVIPSLG-----SGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRT 74
T +++F L +AV + EL++R++ +A R + + +D S +R
Sbjct: 9 TFLAVFCLCFAVYLGVSTVKSSPKYELKRRLQRLA------RDKSAQGMPEDLRSEIIRE 62
Query: 75 RDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIW 134
L + KL L ++ KL +G + + + L II ++
Sbjct: 63 IP--PLDRILAKLPL-----TRDLDKKLDYSGL--KITASRFL-------IIAASATVVA 106
Query: 135 IFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICV 194
L + +GAV++ P ++ +++R +PDAL ++ +
Sbjct: 107 FILILLLSKLILAALLGAVLVS-----LIPFAFLHFKIRQRLEKFTELFPDALTMIARSL 161
Query: 195 ESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNA 254
+G S + A++ V E+I P+ E + N R + +R
Sbjct: 162 RAGHSFNSAIQLVGEEIAD---PVGELFKTAYEQQLLGLRITETLTNLNERIESLDLRFF 218
Query: 255 TQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVI 314
T A+ ++ G ++ + L L R + + + + ++T ++ LPV +I
Sbjct: 219 TTAIAINNDVGGNLSEILENLAKTIRERLKIRRQVRVYTAQGRMTG-YVLGALPVFTFLI 277
Query: 315 I 315
Sbjct: 278 F 278
>gi|220913385|ref|YP_002488694.1| type II secretion system protein [Arthrobacter chlorophenolicus A6]
gi|219860263|gb|ACL40605.1| type II secretion system protein [Arthrobacter chlorophenolicus A6]
Length = 316
Score = 89.9 bits (222), Expect = 5e-16, Method: Composition-based stats.
Identities = 48/274 (17%), Positives = 103/274 (37%), Gaps = 27/274 (9%)
Query: 55 LRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLN 114
+ +++ S+Q S +RL + L +KK +L AG E
Sbjct: 37 MSRRRPDSIQHSSGLTRLTNQTVGVLNRGLKKRPTSIFS-----RERLEQAGLNKEPGDY 91
Query: 115 ILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQK 174
+L+ I + + + A+IL + + ++ L +
Sbjct: 92 LLMA-----------GAITLVSTVTAFFVGGIGIGILALILTPVLLYLG----LNMLTAR 136
Query: 175 RQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPN 234
R+ + PD L + + +G S+ +A+ A++ G P++EE+ + E +
Sbjct: 137 RRKTFDAQVPDTLQMFSGGLRAGHSLLRAIDAAAQENQG---PMAEELSRIVNETRIGRD 193
Query: 235 RQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASL 294
+ + RT + +QA+ G + + L + R ++ + +A S
Sbjct: 194 LGESMADVSRRTASEDFYWISQAIEIHREVGGDLAEVLDHVGETIRDRNQVKGQVRALSA 253
Query: 295 GPKLTVPMIIFFLPVLI---LVIIGPAILSIIDT 325
+++ M++ LP+L+ LV P + T
Sbjct: 254 EGRISA-MVLMALPILMFIGLVTFNPTYARVFTT 286
>gi|294140781|ref|YP_003556759.1| Flp pilus assembly protein TadB [Shewanella violacea DSS12]
gi|293327250|dbj|BAJ01981.1| Flp pilus assembly protein TadB [Shewanella violacea DSS12]
Length = 325
Score = 89.6 bits (221), Expect = 5e-16, Method: Composition-based stats.
Identities = 59/306 (19%), Positives = 119/306 (38%), Gaps = 24/306 (7%)
Query: 9 FDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSA 68
+ E+ +++ L A+ +P A+ R+ L+K +
Sbjct: 1 MFSNEVIFLGLIFLAVILLSQALFLPVYSPQRANT-----ALIRKRLKKLSANAGDTSIE 55
Query: 69 SSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFL 128
S L + L NF +KL I EN+ +L A + + + L++ ++ II
Sbjct: 56 VSLLHKSKLEKLSNFGRKLE--RIEFIENLSYRLELADY--KMMGHHFLILGVLTSIITA 111
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
++ +I PF + VI ++ ++ KR +I+ +PD LD
Sbjct: 112 MITWFYI-------SDPFMTIIVFVITAFLF-----NMKLNRDTNKRMDTIEADFPDGLD 159
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
++ +++G S A++ E++ G PL++E L +++ + + A F R
Sbjct: 160 VIRRALQAGYSFTDAIKLATEELEG---PLAKEFKLMFVNINYTKDIKRALLGFIQRVPS 216
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP 308
A++ G ++ +++ L R K S +L+ ++I
Sbjct: 217 VSALAFASAVMVQRETGGNLAENIENLTRVIRQRFKFRRRVKTLSAEGRLSAWILILLPF 276
Query: 309 VLILVI 314
VL VI
Sbjct: 277 VLFAVI 282
>gi|325673437|ref|ZP_08153128.1| type II secretion system protein [Rhodococcus equi ATCC 33707]
gi|325555458|gb|EGD25129.1| type II secretion system protein [Rhodococcus equi ATCC 33707]
Length = 623
Score = 89.6 bits (221), Expect = 5e-16, Method: Composition-based stats.
Identities = 46/265 (17%), Positives = 100/265 (37%), Gaps = 16/265 (6%)
Query: 60 ITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVV 119
+ +A + L F ++L +D+N+ + R A + +
Sbjct: 338 RAPARISAARRGRQDGRDSMLSRFAERL---VQWIDQNLRRRGRIA---ARTQALQEAGL 391
Query: 120 RLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSI 179
+L ++G I L + A +L+ + +++ + +R+++
Sbjct: 392 KLRPGDFIALVGAAAITAAAIGL---LASGIVAALLLAAITVGLSRIYLRVMAGRRRAAF 448
Query: 180 KRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAF 239
D+L LL + +G S+ +AL ++ + VP SEE + E + +
Sbjct: 449 ADQLDDSLQLLASNLRAGHSMLRALDSLSREAE---VPTSEEFARIVNETRVGRDLNESL 505
Query: 240 ENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLT 299
++ R + D QA+ + G + + L + + R + + KA + KL+
Sbjct: 506 DDVARRMRSDDFNWIAQAIAINREVGGDLAEVLDQVGNTIRERNQIRRQVKALAAEGKLS 565
Query: 300 VPMIIFFLP---VLILVIIGPAILS 321
++ LP L++ P LS
Sbjct: 566 A-YVLMALPFGLTAFLLVSNPDYLS 589
>gi|240102254|ref|YP_002958562.1| type II secretion system protein F [Thermococcus gammatolerans EJ3]
gi|239909807|gb|ACS32698.1| Bacterial type II secretion system protein F [Thermococcus
gammatolerans EJ3]
Length = 358
Score = 89.6 bits (221), Expect = 6e-16, Method: Composition-based stats.
Identities = 35/196 (17%), Positives = 82/196 (41%), Gaps = 4/196 (2%)
Query: 121 LVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIK 180
+ + II I + + LLE + +L GF + + ++R + ++
Sbjct: 119 VALMIITSIFLGAFSLAFGLLLEMDVFTSMMLGLLGFIGGFLYMRHYPRMVWRRRVAEVE 178
Query: 181 RAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFE 240
+A P L + + +G+ I +AL VA+ SEE L + ++ + + A E
Sbjct: 179 KALPYVLRHIASLLSAGVGIAEALVSVAK---ADYGVASEEFELIVRDMRAGASFEEALE 235
Query: 241 NFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV 300
F + + V + ++++ ++G ++ + L + + E M+ + + +
Sbjct: 236 RFEEKMGSENVSRVVKQILRAIKFGGNLAEILYKMAEDFAFEYRMKLVEYVQKVNGIAFI 295
Query: 301 PMIIFF-LPVLILVII 315
M + +P + +V I
Sbjct: 296 YMFMTIVMPTMFIVAI 311
>gi|154482609|ref|ZP_02025057.1| hypothetical protein EUBVEN_00276 [Eubacterium ventriosum ATCC
27560]
gi|149736509|gb|EDM52395.1| hypothetical protein EUBVEN_00276 [Eubacterium ventriosum ATCC
27560]
Length = 478
Score = 89.6 bits (221), Expect = 6e-16, Method: Composition-based stats.
Identities = 34/180 (18%), Positives = 75/180 (41%), Gaps = 9/180 (5%)
Query: 151 GAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAED 210
++ F + + V+KR ++ +P+ L +L+ +G+SI ++ R+
Sbjct: 298 IVAFIMCVAVFFLKDRDLKSEVKKRNIQLQFDYPEILSKILLYSNAGLSIKSSIERIVRQ 357
Query: 211 IGG-------QSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDR 263
+ EE+ + ++ + A + R + + Q+ R
Sbjct: 358 YEDEKKKNPKEYHYAYEELKMATVKMKSGVSEINAINQYGERCGLHNYIKLANIIEQNIR 417
Query: 264 YGTS-IGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
GT + +L ++ ER A K+ + + KL PM + L V +++++ PA++SI
Sbjct: 418 RGTGELSFALENELNRALVERKNTALKRGSEISTKLLGPMTV-MLIVALVILMVPALMSI 476
>gi|312136915|ref|YP_004004252.1| type ii secretion system f domain protein [Methanothermus fervidus
DSM 2088]
gi|311224634|gb|ADP77490.1| Type II secretion system F domain protein [Methanothermus fervidus
DSM 2088]
Length = 339
Score = 89.6 bits (221), Expect = 6e-16, Method: Composition-based stats.
Identities = 47/247 (19%), Positives = 104/247 (42%), Gaps = 26/247 (10%)
Query: 80 LRNFVKKLNLKAILVDENIVNKLRAAGFRSE--YSLNILLVVRLVVPIIFLILGIIWIFG 137
L +F+ K K +L+ + L G + Y L++L ++ + ++ +L II F
Sbjct: 10 LASFLNKFVPKKLLLH--VQESLVRCGIYMKASYFLSLLFILSAISAVVATMLAIILNFN 67
Query: 138 YDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESG 197
+ AV+ F A + + ++R+ +I+ + PD L L + +G
Sbjct: 68 I-----------ILAVLAGILAPFAAAFAALYIIAERRRGTIEESTPDFLTQLASELRAG 116
Query: 198 ISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQA 257
IS++ A+ + + G PL +E+ T E+ + + + NR + + + +
Sbjct: 117 ISLESAIDDLTKYGEG---PLYDELKRTAIEIKMGRSFESSLIAMANRLKSEQLNRTFRM 173
Query: 258 LIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGP 317
+ + R G S+ L + + R ++ E+K+ M+ ++ +I P
Sbjct: 174 ISEGRRAGASLSRVLESVAEDLRQVLALKRERKSN--------VMMYAMFFLIAGLIGAP 225
Query: 318 AILSIID 324
++ +I
Sbjct: 226 LVVGLIS 232
>gi|78186666|ref|YP_374709.1| TadB protein [Chlorobium luteolum DSM 273]
gi|78166568|gb|ABB23666.1| TadB protein [Chlorobium luteolum DSM 273]
Length = 322
Score = 89.6 bits (221), Expect = 6e-16, Method: Composition-based stats.
Identities = 33/206 (16%), Positives = 80/206 (38%), Gaps = 8/206 (3%)
Query: 122 VVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKR 181
+ ++ + LG+ + G +L + +++ P +W+S +R+ +
Sbjct: 93 ALQVLAMTLGLFALVGVPGML---MGINALFILVPAAAIASTPVLWLSRAANRRRRAFGD 149
Query: 182 AWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFEN 241
P+ALD + + +G S+ A+ + + P+ E E+ F + A
Sbjct: 150 KLPEALDYISRSMRAGHSLTSAIGMLGTEFRD---PIGHEFKTVFDEIGFGIPFKDAIGE 206
Query: 242 FYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVP 301
+R Q + +L G ++ + L L + R + + + S + +
Sbjct: 207 LADRVQSTDLNFFVISLQIQHETGGNLTELLDGLSNTIRQRIKLRGKIRTLSSEGRASAW 266
Query: 302 MIIFFLPVLILV--IIGPAILSIIDT 325
++ L+ + +I P +S++ T
Sbjct: 267 VLGSMPFALVAILTLINPGYISVLWT 292
>gi|312139258|ref|YP_004006594.1| type ii secretion system integral membrane subunit [Rhodococcus
equi 103S]
gi|311888597|emb|CBH47909.1| putative type II secretion system integral membrane subunit
[Rhodococcus equi 103S]
Length = 622
Score = 89.6 bits (221), Expect = 6e-16, Method: Composition-based stats.
Identities = 46/265 (17%), Positives = 100/265 (37%), Gaps = 16/265 (6%)
Query: 60 ITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVV 119
+ +A + L F ++L +D+N+ + R A + +
Sbjct: 337 RAPARISAARRGRQDGRDSMLSRFAERL---VQWIDQNLRRRGRIA---ARTQALQEAGL 390
Query: 120 RLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSI 179
+L ++G I L + A +L+ + +++ + +R+++
Sbjct: 391 KLRPGDFIALVGAAAITAAAIGL---LASGIVAALLLAAITVGLSRIYLRVMAGRRRAAF 447
Query: 180 KRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAF 239
D+L LL + +G S+ +AL ++ + VP SEE + E + +
Sbjct: 448 ADQLDDSLQLLASNLRAGHSMLRALDSLSREAE---VPTSEEFARIVNETRVGRDLNESL 504
Query: 240 ENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLT 299
++ R + D QA+ + G + + L + + R + + KA + KL+
Sbjct: 505 DDVARRMRSDDFNWIAQAIAINREVGGDLAEVLDQVGNTIRERNQIRRQVKALAAEGKLS 564
Query: 300 VPMIIFFLP---VLILVIIGPAILS 321
++ LP L++ P LS
Sbjct: 565 A-YVLMALPFGLTAFLLVSNPDYLS 588
>gi|152994351|ref|YP_001339186.1| type II secretion system protein [Marinomonas sp. MWYL1]
gi|150835275|gb|ABR69251.1| type II secretion system protein [Marinomonas sp. MWYL1]
Length = 329
Score = 89.6 bits (221), Expect = 6e-16, Method: Composition-based stats.
Identities = 37/183 (20%), Positives = 76/183 (41%), Gaps = 4/183 (2%)
Query: 126 IFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPD 185
++ G ++ G+ L + + +++L FCA V N + K K+ P
Sbjct: 101 AMMLAGPCFLLGF-TLAKDSLSPFLLSLVLSVVFFFCAVLVLYRNAMAKHLKEFKQNLPQ 159
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
A+D ++ +G+ + A VAE++ G PL++E L L + A ++ R
Sbjct: 160 AIDSIVRIARAGVPVSNAFNLVAENLPG---PLAKEFSLVDKWLRLGVPLRQAMQDSAKR 216
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
++ R LI + G + D+L L R + + + +A + + + ++
Sbjct: 217 VPLNEYRFFVVILIINQEAGGRLSDTLERLAHTLRERQELALKIRAKTSEVRASAVIVAS 276
Query: 306 FLP 308
P
Sbjct: 277 LAP 279
>gi|89053484|ref|YP_508935.1| type II secretion system protein [Jannaschia sp. CCS1]
gi|88863033|gb|ABD53910.1| type II secretion system protein [Jannaschia sp. CCS1]
Length = 322
Score = 89.6 bits (221), Expect = 6e-16, Method: Composition-based stats.
Identities = 25/175 (14%), Positives = 67/175 (38%), Gaps = 6/175 (3%)
Query: 123 VPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRA 182
+ ++ + L + V + +G G W+S +KR S ++
Sbjct: 94 LMLVMAGAAVAAFVLLQVLTTASLPISVLCAVAMGVGGVYL---WVSRTAKKRLSLLEEQ 150
Query: 183 WPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENF 242
PDA++L++ + G ++ V+ ++ P++ E+ + E ++ + +
Sbjct: 151 LPDAVELMVRSLRVGHPFVASINTVSREMSD---PIASELGVIADEAAYGRDVAESIRAM 207
Query: 243 YNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPK 297
+R + +R A+ G ++ + L L R+ + + + + +
Sbjct: 208 ADRLDIQDLRFLAVAVGIQQTSGGNLAEILAGLADVMRARFKLFRKVRVITAEAR 262
>gi|121607250|ref|YP_995057.1| type II secretion system protein [Verminephrobacter eiseniae
EF01-2]
gi|121551890|gb|ABM56039.1| type II secretion system protein [Verminephrobacter eiseniae
EF01-2]
Length = 290
Score = 89.6 bits (221), Expect = 6e-16, Method: Composition-based stats.
Identities = 38/199 (19%), Positives = 80/199 (40%), Gaps = 5/199 (2%)
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
L L + + LL + + + P + + ++R + PDAL
Sbjct: 64 LFLANLAVMALGGLLVWLISGSELLALPAFFALGLLPRLLYRQMRKRRLRKFEEQLPDAL 123
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQ 247
+L + +G+ + A+ ++ + G PLS+E L + E + A N +R
Sbjct: 124 MMLSGGLRAGLGLSSAMAQLVAESG---PPLSQEFSLMLREQRLGVTLEQALSNLNHRMP 180
Query: 248 MDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFL 307
T A+ ++ G + ++L + RS M+A+ A + KL ++
Sbjct: 181 TQTTVLITSAMRIANETGGGLAETLERTSATIRSRLRMQAKIGALTAQGKLQAWVVGALP 240
Query: 308 PVLILVI--IGPAILSIID 324
L+L++ + P +S++
Sbjct: 241 IALMLILNEMEPQAMSMLW 259
>gi|322369440|ref|ZP_08044005.1| type II secretion system protein [Haladaptatus paucihalophilus
DX253]
gi|320551172|gb|EFW92821.1| type II secretion system protein [Haladaptatus paucihalophilus
DX253]
Length = 699
Score = 89.2 bits (220), Expect = 7e-16, Method: Composition-based stats.
Identities = 39/209 (18%), Positives = 79/209 (37%), Gaps = 9/209 (4%)
Query: 121 LVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIK 180
L V + +L ++ D V V++ + + ++R +I+
Sbjct: 418 LYVTVPLALLSVVLRVFPDLAAGTATPASVDGVVIQAALFVLGTYAVVQWAYRRRVKAIE 477
Query: 181 RAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFE 240
A PD LD L E+G+++ +++RRV L++E+ ++ + + A
Sbjct: 478 AAVPDMLDRLASLNEAGMTVVESVRRVTN---SDLGALNDELERMSRDIEWGTDAATALR 534
Query: 241 NFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRS-ERLMEAEKKAASLGPKLT 299
+R V + + IG LR+ + + RL + T
Sbjct: 535 RVEDRIDTPTVTRVVSLVTNAMHASGDIGRVLRIAADDAQESRRLQRQREDEMK-----T 589
Query: 300 VPMIIFFLPVLILVIIGPAILSIIDTMKD 328
+II+ + LVIIG ++ ++D
Sbjct: 590 YLIIIYLSFFVFLVIIGALSAILVPALQD 618
Score = 41.4 bits (96), Expect = 0.17, Method: Composition-based stats.
Identities = 29/223 (13%), Positives = 73/223 (32%), Gaps = 13/223 (5%)
Query: 107 FRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSV 166
R+E + + LVV + + + + +L G + +
Sbjct: 107 LRAELPARLQFLANLVVVPSLTLGELFVLLVFSSAT---------VGLLGGALTYWLRWE 157
Query: 167 WISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTI 226
S R I + + SG+ + +R +A + + E+ + +
Sbjct: 158 LPSYRGNARARKIDGSLSRTVAFTYALSRSGMGMPAIMRTLARN-RDVYGEAAAEVGVGV 216
Query: 227 AELS-FLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLM 285
+ F + A + ++ + + + L + G S+ L + +
Sbjct: 217 KAMDLFGLDVLTAIKQMSRQSPSEKFEDFGENLASVLQSGQSLPTYLSEQYERYQRDAKA 276
Query: 286 EAEKKAASLGPKLTVPMIIFFLPVLIL--VIIGPAILSIIDTM 326
E E L + +F + L+L +++ ++ + DT+
Sbjct: 277 EQEAFLELLSVLAEGYVSLFVVGPLLLITILVIMGLMGVADTL 319
>gi|156744076|ref|YP_001434205.1| type II secretion system protein [Roseiflexus castenholzii DSM
13941]
gi|156235404|gb|ABU60187.1| type II secretion system protein [Roseiflexus castenholzii DSM
13941]
Length = 323
Score = 89.2 bits (220), Expect = 8e-16, Method: Composition-based stats.
Identities = 48/241 (19%), Positives = 91/241 (37%), Gaps = 8/241 (3%)
Query: 85 KKLNLKAILVDENIVNKLRAAGFRSEYSLNI---LLVVRLVVPIIFLILGIIWIFGYDKL 141
+ + L D+ I +L R ++ I L L + + +L I + L
Sbjct: 51 GRAERSSTLNDQQIAERLNEVIKRQSFASRIEHDLAAASLPLTVPEYLLMRIAVPLIATL 110
Query: 142 LEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISID 201
L + +G A S W+ Q+R+ + P+ LDL+ + G S+
Sbjct: 111 LALLIWRQALIAPAALIIGHLALSFWMRIRRQRRKQAFSDQLPETLDLITASMRGGFSLV 170
Query: 202 QALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQS 261
Q+L VA G P+ E+ E+ + A +N R + + A+
Sbjct: 171 QSLANVA---GDVQEPMRTELRRVFQEVQLGLSITQALDNLVQRMESTDLDLVVTAIKIH 227
Query: 262 DRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMI--IFFLPVLILVIIGPAI 319
R G ++G L + + R + E + + +++ +I + F LI+ I P
Sbjct: 228 ARVGGNLGQILENISTTMRERAKLRREVRVITSMQRISSYVIGALPFALALIIFTINPTY 287
Query: 320 L 320
+
Sbjct: 288 M 288
>gi|325958171|ref|YP_004289637.1| type ii secretion system F domain-containing protein
[Methanobacterium sp. AL-21]
gi|325329603|gb|ADZ08665.1| Type II secretion system F domain protein [Methanobacterium sp.
AL-21]
Length = 310
Score = 89.2 bits (220), Expect = 8e-16, Method: Composition-based stats.
Identities = 41/201 (20%), Positives = 86/201 (42%), Gaps = 15/201 (7%)
Query: 127 FLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSV----WISNLVQKRQSSIKRA 182
+ L +I + + F L IL VGF PS W+ +++R +I++
Sbjct: 43 LITLMLIAGIIFGLIGLLSFSLIGITPILGFLVGFLTPSFIVLGWLFFSMERRVDAIEQT 102
Query: 183 WPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENF 242
PD L + + +G+ I+ AL +++ GG PL+ E+ + E+ + A +
Sbjct: 103 TPDFLRQISSLLRAGVGIETALEDISKQGGG---PLNAELKRAVIEIKIGSSFDEALLSM 159
Query: 243 YNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPM 302
R + + + +++ R G S+ D + + + R+ ++ E++A M
Sbjct: 160 GERLKSKTLDRTFRMILEGKRVGGSLSDVIETVAEDLRAVLALKRERRAN--------VM 211
Query: 303 IIFFLPVLILVIIGPAILSII 323
+ ++ +I P L +I
Sbjct: 212 MSVMFLIISAIIAAPFALGMI 232
>gi|300856046|ref|YP_003781030.1| putative type II secretion system protein [Clostridium ljungdahlii
DSM 13528]
gi|300436161|gb|ADK15928.1| putative type II secretion system protein [Clostridium ljungdahlii
DSM 13528]
Length = 320
Score = 89.2 bits (220), Expect = 9e-16, Method: Composition-based stats.
Identities = 29/155 (18%), Positives = 69/155 (44%), Gaps = 4/155 (2%)
Query: 161 FCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSE 220
+ P I + R + + ++ +++G S QA+ V+E+ S P S+
Sbjct: 127 WNVPQFIIRKRKKDRIKHFDSELNEGITIISNSLKAGYSFLQAIAVVSEE---TSDPFSK 183
Query: 221 EMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETR 280
E + E+S + + A +N +R + + +R ++ G ++ + L + R
Sbjct: 184 EFKKLLKEMSLGISEEDALKNLLSRVESEDLRLIVNVILIQKDIGGNLSEVLDNISETIR 243
Query: 281 SERLMEAEKKAASLGPKLTVPMIIFFLPVLILVII 315
+ +++E K + +L+ +I+ +P+ + V I
Sbjct: 244 ERQKIKSELKTLTAQGRLSG-IILMLIPIFLGVTI 277
>gi|145219379|ref|YP_001130088.1| type II secretion system protein [Prosthecochloris vibrioformis DSM
265]
gi|145205543|gb|ABP36586.1| type II secretion system protein [Chlorobium phaeovibrioides DSM
265]
Length = 322
Score = 89.2 bits (220), Expect = 9e-16, Method: Composition-based stats.
Identities = 34/192 (17%), Positives = 75/192 (39%), Gaps = 8/192 (4%)
Query: 123 VPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRA 182
+ I+ + L + + + PF + A + G P +W+ L +R+ + +
Sbjct: 96 LLILMIALFTVVVALGLQNHNNPFLILALAFCIAGS-----PVLWLLKLADRRRRAFEDK 150
Query: 183 WPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENF 242
P+ALD + + +G S+ A+ V ++ G P+ E + E+ F + A
Sbjct: 151 LPEALDHISRALRAGHSLAPAMGMVGQEFGD---PIGYEFKIVFDEIGFGIPFKEAIGRL 207
Query: 243 YNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPM 302
R Q + + +L G ++ + L R + + + S + + +
Sbjct: 208 AERVQSNDLNFFVISLTIQHETGGNLTELFDGLARTIRHRIKLRGKIRILSSEGRASGWV 267
Query: 303 IIFFLPVLILVI 314
+ VL+ V+
Sbjct: 268 LGSMPFVLMAVL 279
>gi|14521588|ref|NP_127064.1| hypothetical protein PAB1458 [Pyrococcus abyssi GE5]
gi|5458807|emb|CAB50294.1| Hypothetical protein [Pyrococcus abyssi GE5]
Length = 355
Score = 88.8 bits (219), Expect = 9e-16, Method: Composition-based stats.
Identities = 31/197 (15%), Positives = 88/197 (44%), Gaps = 6/197 (3%)
Query: 121 LVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIK 180
+ + + ++ ++ F + ++E P + + + +GF + ++ ++R ++
Sbjct: 121 VALMLAVGLISGVFAFLFGIIIEMPIDMSLLIGVAGFLLGFMYMRFYPKSVWRRRVEEVE 180
Query: 181 RAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFE 240
RA P L + + +GI + + + VA+ +SEE + + E+ + + A
Sbjct: 181 RALPYVLRHMASLLNAGIGLAETMVSVAK---SDYGVISEEFRMMVQEMHKGSSFEDALA 237
Query: 241 NFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV 300
+F + + D V + ++++ ++G ++ D L + E E ++ + ++
Sbjct: 238 SFEEKMKSDMVSRVVKQILRALKFGGNLADILYKMADEFSFEYRIKLMDYVQKING-ISF 296
Query: 301 PMIIF--FLPVLILVII 315
+ +P L++V+I
Sbjct: 297 VYMFMTVVMPTLLIVVI 313
>gi|78060307|ref|YP_366882.1| Flp pilus assembly protein TadB [Burkholderia sp. 383]
gi|77964857|gb|ABB06238.1| Flp pilus assembly protein TadB [Burkholderia sp. 383]
Length = 325
Score = 88.8 bits (219), Expect = 9e-16, Method: Composition-based stats.
Identities = 34/182 (18%), Positives = 76/182 (41%), Gaps = 5/182 (2%)
Query: 127 FLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDA 186
++L +++ L + ++ A+ + + G C P +++ KR ++R PD
Sbjct: 99 LIMLSVVFAAFAWVALSFATLPQLAALPVALFAG-CVPMMYVMRCRGKRMRKLERQLPDI 157
Query: 187 LDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRT 246
D++ + SG S L V ++ P+ E +T E+++ + A N R
Sbjct: 158 CDMISRALRSGHSFTSTLGMVGDEFPD---PMGGEFRVTFDEVNYGVSLHDALMNLATRV 214
Query: 247 QMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFF 306
+ +R A++ G ++ + L + + R + + + S +L+ I+
Sbjct: 215 PVQDLRYFVIAVLIQRETGGNLAELLDCISALIRERFKLFDKVRVLSAEGRLSA-WILGL 273
Query: 307 LP 308
LP
Sbjct: 274 LP 275
>gi|269960463|ref|ZP_06174835.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
gi|269834540|gb|EEZ88627.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
Length = 322
Score = 88.8 bits (219), Expect = 1e-15, Method: Composition-based stats.
Identities = 39/232 (16%), Positives = 93/232 (40%), Gaps = 19/232 (8%)
Query: 96 ENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVIL 155
+ + KL AG ++ + L + + +G++ F +
Sbjct: 78 DGLKKKLELAGISMGFTRFLFLSF-----LAGVAVGLVIFI---------FGQEWYMCVG 123
Query: 156 IGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQS 215
+ + A ++ ++ R + P+ALD++ +++G I QA V ++ S
Sbjct: 124 VTVACWVAIYFYLQKMIADRLMKFEEQLPEALDIIKRVLQAGQPITQAFGEVGNEM---S 180
Query: 216 VPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVL 275
PL E L T L++ + ++A RT + + A++ G ++ +++ L
Sbjct: 181 APLGPEFLNTFNMLNYGYDLRLAIMQMSERTPTVSMLAFSSAVLLQKETGGNLVENIEKL 240
Query: 276 VSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVI--IGPAILSIIDT 325
R+ + + K S +++ +++ L ++I I P + ++ T
Sbjct: 241 SQILRARFKLARKIKTISAESRMSAWVLVLAPFGLYVIISLIRPEYIELLHT 292
>gi|116748936|ref|YP_845623.1| type II secretion system protein [Syntrophobacter fumaroxidans
MPOB]
gi|116698000|gb|ABK17188.1| type II secretion system protein [Syntrophobacter fumaroxidans
MPOB]
Length = 321
Score = 88.8 bits (219), Expect = 1e-15, Method: Composition-based stats.
Identities = 32/192 (16%), Positives = 75/192 (39%), Gaps = 5/192 (2%)
Query: 124 PIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAW 183
P F +L + + L+ + +L + F P + + + ++R +R
Sbjct: 91 PAGFYLLLALVLAAVGYLIGTSLLKIPYSGLLCAVLLFFVPVLILMSRRKQRMEKFQRQL 150
Query: 184 PDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFY 243
P+ALDL+ +++G + ++ VA+++ P+ E T+ E++F + A +N
Sbjct: 151 PEALDLVSRALKAGHAFSGGMKMVADEMDD---PIGPEFDKTLDEINFGVSVADALKNLA 207
Query: 244 NRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMI 303
R + A++ G ++ D + + R + + S + + I
Sbjct: 208 ARVACPDLSYFVVAVLIQRESGGNLADLIASITHLIRERFKLYGRIRVLSAEGRASA--I 265
Query: 304 IFFLPVLILVII 315
I + +
Sbjct: 266 ILIAIPIFVAAA 277
>gi|225570080|ref|ZP_03779105.1| hypothetical protein CLOHYLEM_06176 [Clostridium hylemonae DSM
15053]
gi|225161550|gb|EEG74169.1| hypothetical protein CLOHYLEM_06176 [Clostridium hylemonae DSM
15053]
Length = 394
Score = 88.8 bits (219), Expect = 1e-15, Method: Composition-based stats.
Identities = 36/192 (18%), Positives = 82/192 (42%), Gaps = 7/192 (3%)
Query: 137 GYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVES 196
Y + ++ + V +L + + ++++ + + +P+ ++ + + +
Sbjct: 202 SYYREMDMRGAVLVVMAVLTAILLYALEKQNRYKQEKEKRLQMLQDYPELVNKFTLFLGA 261
Query: 197 GISIDQALRRVAEDIGGQSVPLS-----EEMLLTIAELSFLPNRQVAFENFYNRTQMDCV 251
G+++ R++ D Q+ EEM +T+ E+ ++E F ++
Sbjct: 262 GMTVRNTWRKIVRDYEKQTEEWGVRYAYEEMKVTLNEMQSGITEAESYERFGRHCKVQEY 321
Query: 252 RNATQALIQSDRYGT-SIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVL 310
L Q+ R GT + LR+ + ER A + G KL +PM L V+
Sbjct: 322 VKFGALLSQNLRKGTKDLVHLLRMDAVQAFEERKTRARRLGEEAGTKLLLPM-FLMLTVV 380
Query: 311 ILVIIGPAILSI 322
+++++ PA LS+
Sbjct: 381 LVIVVVPAFLSM 392
>gi|325958219|ref|YP_004289685.1| type ii secretion system F domain-containing protein
[Methanobacterium sp. AL-21]
gi|325329651|gb|ADZ08713.1| Type II secretion system F domain protein [Methanobacterium sp.
AL-21]
Length = 371
Score = 88.8 bits (219), Expect = 1e-15, Method: Composition-based stats.
Identities = 43/204 (21%), Positives = 86/204 (42%), Gaps = 20/204 (9%)
Query: 125 IIFLILGIIWIFGYDKLLEYPFQLRVGAV-----ILIGYVGFCAPSVWISNLVQKRQSSI 179
+I +I GI ++ + ++ F + VGAV ++I + P++ R +
Sbjct: 140 LIMVIGGISFVVVFMLMIVLGFGVLVGAVFGLIILMISIIFVFLPNI----KKGSRSNEA 195
Query: 180 KRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAF 239
R P AL + + +GI + ++R VA G LSEE + E+ + + A
Sbjct: 196 SRELPFALRQMATELRAGIGMHDSMRSVALSGYG---ALSEEFARALEEIKYGETTEKAL 252
Query: 240 ENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLT 299
+ R + ++ A + ++ G + +L V+ +T E M+ + + L
Sbjct: 253 TDMSERVNSEGLKRAIYQITRTLSSGGDLAKTLNVIADDTAYEMRMKLKDYSQKLNS--- 309
Query: 300 VPMIIFFLPVLILVIIGPAILSII 323
F + + + I+GP I I+
Sbjct: 310 -----FTMIYMFVAILGPVITMIM 328
>gi|126733577|ref|ZP_01749324.1| Putative Flp pilus assembly protein TadB [Roseobacter sp. CCS2]
gi|126716443|gb|EBA13307.1| Putative Flp pilus assembly protein TadB [Roseobacter sp. CCS2]
Length = 321
Score = 88.8 bits (219), Expect = 1e-15, Method: Composition-based stats.
Identities = 44/285 (15%), Positives = 114/285 (40%), Gaps = 32/285 (11%)
Query: 15 AVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQI--TSLQKDSASSRL 72
+ + V++ +L+ + G KS++++ ++ R+ + ++ +L
Sbjct: 7 LIYVLIFVAVLALVQGAYLVIFG--------KSISMDGKVNRRLDMLDKGGSREQVLDQL 58
Query: 73 RTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGI 132
R ++ +++ + + + A+L D R++ + + ++L+ I+ +L
Sbjct: 59 RKEMTQHMKS--QSIPIYALLAD------------RAQKANIVFTPIQLI--IMMFVLSG 102
Query: 133 IWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLI 192
+ L +R+ +L+G G VW++ +KR + + P+A++L++
Sbjct: 103 VSFGLLTILTGVGVPIRILVAVLMGVGGIY---VWVNGKAKKRMNMLAEQLPEAVELMVR 159
Query: 193 CVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVR 252
+ G A+ VA ++ PL E+ + E ++ + ++ R +R
Sbjct: 160 SLRVGHPFSSAIAIVAREVPD---PLGTEIGMISDEAAYGRDMGETLKSMAERLDNQDMR 216
Query: 253 NATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPK 297
A+ G ++ + L L R+ + A + K
Sbjct: 217 FLAVAVTIQQTSGGNLAEILDGLAKVIRARFRLFRRVAAITAEAK 261
>gi|299067811|emb|CBJ39022.1| Tad secretion system, pilus assembly protein [Ralstonia
solanacearum CMR15]
Length = 325
Score = 88.8 bits (219), Expect = 1e-15, Method: Composition-based stats.
Identities = 53/313 (16%), Positives = 123/313 (39%), Gaps = 27/313 (8%)
Query: 14 LAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLR 73
+++ A+++ ++ S + +R+ L+ + S D +S L+
Sbjct: 8 FLLSVFVAIAL-GVLGTYQWWSTHRSQTARRLS------HRLQTALLNSASHDKEASILK 60
Query: 74 TRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGII 133
R F + L+ + + + L +G ++S+ LL + L ++ L
Sbjct: 61 QRVLSDSPEFAQ--LLQRLPRIDVVDRFLLQSGL--DWSVGRLLGLSLASAVLAGGL--- 113
Query: 134 WIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLIC 193
L +P + ++ L+G P +++ KR ++ P+A DLL
Sbjct: 114 ------VSLLHPLWVAQLSITLMGA---SLPLLYVLRCRAKRLLRLEEQLPEAADLLSRA 164
Query: 194 VESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRN 253
+ +G S+ AL ++ P+ E+ L +E+++ A +R ++ +
Sbjct: 165 LRAGHSLPSALDMAGSEL---PAPIGAELALVFSEINYGVPMGDALTGLTDRVPIEDLHY 221
Query: 254 ATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILV 313
A++ G ++ + L + S R + + + S ++ I+ LP ++ V
Sbjct: 222 LVIAVLIQRESGGNLAEILDNVGSLIRKRLQLLDKVRVLSAEGRM-GGWILTLLPPVVGV 280
Query: 314 IIGPAILSIIDTM 326
I+ +I T+
Sbjct: 281 IVYELNPDLISTL 293
>gi|261252091|ref|ZP_05944664.1| flp pilus assembly protein TadB [Vibrio orientalis CIP 102891]
gi|260935482|gb|EEX91471.1| flp pilus assembly protein TadB [Vibrio orientalis CIP 102891]
Length = 322
Score = 88.4 bits (218), Expect = 1e-15, Method: Composition-based stats.
Identities = 52/300 (17%), Positives = 121/300 (40%), Gaps = 27/300 (9%)
Query: 15 AVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRT 74
I ++ + A+++P+ GS K + R ++ S + A S L+
Sbjct: 7 LFFILLFFAVVFISQALILPAAGSKAKHKELSE--------RLKESQSKLDEEALSLLQE 58
Query: 75 RDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIW 134
KSL + ++L I ++ + +G+ + +L+ L + +L
Sbjct: 59 HYLKSLTPWDRRL--VKIEAFSSLKKLIELSGYDWSLTQTLLVTSSLSLCGFLTVL---- 112
Query: 135 IFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICV 194
L+ PF + + A++ + + W+ + R ++ + P+ALD++ +
Sbjct: 113 ------LIGQPFYIGLAAIVGVWVCLYF----WLGKKISDRLAAFEEQLPEALDIMRRML 162
Query: 195 ESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNA 254
++G + QA V ++ P+ E L++ + ++A RT +
Sbjct: 163 QAGQPVTQAFNEVGLEM---PAPIGVEFKNMFNLLNYGYDMRMAIMQMAERTPTVSMLAF 219
Query: 255 TQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVI 314
+ A+I G ++ ++L + RS ++ + K S +L+ +++ VL L +
Sbjct: 220 SSAVILQKETGGNLSENLEKVSKVLRSRFKLQRKIKTLSAESRLSAWILVLSPFVLFLFL 279
>gi|76663417|emb|CAE47793.1| flp pilus assembling protein [Bdellovibrio bacteriovorus]
Length = 291
Score = 88.4 bits (218), Expect = 1e-15, Method: Composition-based stats.
Identities = 33/208 (15%), Positives = 89/208 (42%), Gaps = 7/208 (3%)
Query: 120 RLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSI 179
++ + I+ + G+ + GA I + G+ P + + + +KR +
Sbjct: 59 KVTILILMMSFGLGALAFLIFWPNVLMGFVFGASITVA--GWQLPLLLVRMIYEKRCARF 116
Query: 180 KRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAF 239
D L ++ +++G + ++++RV E +G P+S+E + ++ + + A
Sbjct: 117 VDQMVDGLTIMANGIKAGSNPQESMKRVVEIMGN---PMSQEFAQVLYQMQVGDSFESAL 173
Query: 240 ENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLT 299
+ NR V+ ++ G ++ ++ + +V R + +E + +A + +
Sbjct: 174 NDLGNRIPRPDVQMFVTSINILKETGGNLAETFQTIVLVVRERQKVEKKIQALTAQGLMQ 233
Query: 300 VPMIIFFLPVLILV--IIGPAILSIIDT 325
++ +L++V II P + + +
Sbjct: 234 GIIVTLIPFILMVVFSIIDPTFIKPMFS 261
>gi|304314056|ref|YP_003849203.1| hypothetical protein MTBMA_c02820 [Methanothermobacter marburgensis
str. Marburg]
gi|302587515|gb|ADL57890.1| putative membrane protein [Methanothermobacter marburgensis str.
Marburg]
Length = 359
Score = 88.4 bits (218), Expect = 1e-15, Method: Composition-based stats.
Identities = 42/214 (19%), Positives = 92/214 (42%), Gaps = 12/214 (5%)
Query: 113 LNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLV 172
+++++ + LI+ ++ FG + L + A+I+I P++
Sbjct: 126 PKLIMILGGGSGAVLLIVMVVLGFGIEIGLAMMLAVLFMAIIII-----FLPNL----QK 176
Query: 173 QKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFL 232
KR S R P AL + ++SG+ + ++R VA LSEE T+ E+ +
Sbjct: 177 GKRSSEASRELPFALRQMATELKSGLGLHDSMRSVA---MSGYGALSEEFARTLEEIKYG 233
Query: 233 PNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAA 292
+ A NR + D ++ A + ++ G + +L V+ + E M+ + +
Sbjct: 234 ETTESALIEMSNRIESDGLKRAVYQITRTLNSGGDLSKTLNVIADDIAYEMRMKLKDYSQ 293
Query: 293 SLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
L + M + L +I +++ A +++ ++
Sbjct: 294 KLNSFTMIYMFLAILGPVIFLVMLLAASTVMGSV 327
>gi|116687152|ref|YP_840399.1| type II secretion system protein [Burkholderia cenocepacia HI2424]
gi|116652867|gb|ABK13506.1| type II secretion system protein [Burkholderia cenocepacia HI2424]
Length = 325
Score = 88.4 bits (218), Expect = 1e-15, Method: Composition-based stats.
Identities = 50/291 (17%), Positives = 95/291 (32%), Gaps = 25/291 (8%)
Query: 18 ITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDS 77
I T V++ I + R +R + S L+ R
Sbjct: 10 ILTFVAVVLSIEGIYQWWNARHGAAARR-----IESRIRAMSAGGNVQQERLSILKKRML 64
Query: 78 KSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFG 137
+ F +L L+ V + ++ +G I L + W
Sbjct: 65 DESKPF-DRLLLRLPRV-HALDLVIQQSGLDWTLPKLITLSATFA--------ALAWFVA 114
Query: 138 YDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESG 197
L A + + V P ++ KR ++R PD D++ + SG
Sbjct: 115 SFARLPQ------LAAVPVALVAGWLPMTYVLRCRAKRMRKLERQLPDICDMIARALRSG 168
Query: 198 ISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQA 257
S L V ++ S P+ E +T E+++ + A N R + +R A
Sbjct: 169 HSFTSTLGMVGDEF---SEPMGGEFRVTFDEVNYGVSLHDALTNLATRVPVQDLRYFVIA 225
Query: 258 LIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP 308
++ G ++ + L + R + + + S +L+ I+ LP
Sbjct: 226 VLIQRETGGNLAELLESIAGLIRERFKLFDKVRVLSAEGRLSA-WILGLLP 275
>gi|332158910|ref|YP_004424189.1| hypothetical protein PNA2_1270 [Pyrococcus sp. NA2]
gi|331034373|gb|AEC52185.1| hypothetical protein PNA2_1270 [Pyrococcus sp. NA2]
Length = 355
Score = 88.4 bits (218), Expect = 1e-15, Method: Composition-based stats.
Identities = 33/197 (16%), Positives = 84/197 (42%), Gaps = 6/197 (3%)
Query: 121 LVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIK 180
+ + + I+ I F + E + + I+ +GF + ++ ++R ++
Sbjct: 121 VALMLAVGIIAGIMGFFLGIITEMSMDMNLALGIVGFLLGFVYMRFYPKSVWRRRVEEVE 180
Query: 181 RAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFE 240
R+ P L + + +GI + + + VA+ +SEE + I E+ + + A
Sbjct: 181 RSLPYVLRHMASLLSAGIGLAETMVSVAK---SDYGVISEEFRMVIQEMHKGSSFEDALT 237
Query: 241 NFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV 300
F + + D V + ++++ ++G ++ D L + E E ++ + ++
Sbjct: 238 KFEEKMKSDMVSRVVKQILRALKFGGNLSDILYKMADEFSFEYRIKLMDYVQKING-ISF 296
Query: 301 PMIIF--FLPVLILVII 315
+ +P L++V+I
Sbjct: 297 VYMFMTVVMPTLLIVVI 313
>gi|14590540|ref|NP_142608.1| hypothetical protein PH0653 [Pyrococcus horikoshii OT3]
gi|3257061|dbj|BAA29744.1| 358aa long hypothetical protein [Pyrococcus horikoshii OT3]
Length = 358
Score = 88.4 bits (218), Expect = 1e-15, Method: Composition-based stats.
Identities = 32/197 (16%), Positives = 85/197 (43%), Gaps = 6/197 (3%)
Query: 121 LVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIK 180
+ + + I+ I F ++ P + + +L GF + ++ ++R ++
Sbjct: 124 VALMLAVGIISAILTFIVGLIIALPIDMSMLLGVLGFIFGFIYMRFYPKSVWKRRVEEVE 183
Query: 181 RAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFE 240
+A P L + + +GI + +A+ V++ +SEE + + E+ + + A
Sbjct: 184 KALPYVLRHMASLLNAGIGLAEAMVSVSK---ADYGVVSEEFAMVVQEMHKGSSFEDALT 240
Query: 241 NFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV 300
F + + D V + ++++ ++G ++ D L + E E ++ + ++
Sbjct: 241 KFEEKMKSDMVSRVVKQILRALKFGGNLADILYKMADEFSFEYRIKLMDYVQKING-ISF 299
Query: 301 PMIIF--FLPVLILVII 315
+ +P L++V+I
Sbjct: 300 VYMFMTVVMPTLLIVVI 316
>gi|28899185|ref|NP_798790.1| putative tight adherence TadB-like transmembrane protein [Vibrio
parahaemolyticus RIMD 2210633]
gi|153836794|ref|ZP_01989461.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus AQ3810]
gi|260361576|ref|ZP_05774603.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus K5030]
gi|260876733|ref|ZP_05889088.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus AN-5034]
gi|260898189|ref|ZP_05906685.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus Peru-466]
gi|260900404|ref|ZP_05908799.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus AQ4037]
gi|28807409|dbj|BAC60674.1| putative tight adherence TadB-related transmembrane protein [Vibrio
parahaemolyticus RIMD 2210633]
gi|149749940|gb|EDM60685.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus AQ3810]
gi|308089098|gb|EFO38793.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus Peru-466]
gi|308091412|gb|EFO41107.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus AN-5034]
gi|308109112|gb|EFO46652.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus AQ4037]
gi|308114015|gb|EFO51555.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus K5030]
Length = 322
Score = 88.0 bits (217), Expect = 2e-15, Method: Composition-based stats.
Identities = 49/299 (16%), Positives = 121/299 (40%), Gaps = 31/299 (10%)
Query: 30 AVVIPSLGSGELEKRM-KSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLN 88
A+++PS G K++ K + + + ++ I+ L+++S ++ L ++ + +
Sbjct: 22 ALILPSAGKKVKHKQLIKRIHESHKHIDQESISLLRENS------LKNLSPLERWLVRFS 75
Query: 89 LKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQL 148
L E+ KL AG +S I + + +G++ +
Sbjct: 76 LF-----ESFKKKLELAGISMGFSRVIFFTF-----LSGVAVGLLLYL---------WGQ 116
Query: 149 RVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVA 208
+ + + ++ + R + P+ALD++ +++G I QA V
Sbjct: 117 VWYLCAGVAVACWVSAYFYLQKKIADRLMKFEEQLPEALDIIKRVLQAGQPITQAFGEVG 176
Query: 209 EDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSI 268
++ S PL E L T L++ + ++A RT + + A++ G ++
Sbjct: 177 REV---SAPLGPEFLNTFNLLNYGYDLRLAIMQMSERTPTVSMLAFSSAVLLQKETGGNL 233
Query: 269 GDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVI--IGPAILSIIDT 325
+++ L R+ + + K S +++ +++ L ++I + P + ++ T
Sbjct: 234 VENIEKLSHILRARFKLARKIKTISAESRMSAWVLVLAPFALYVIISLVRPEYIELLHT 292
>gi|317133735|ref|YP_004089646.1| Type II secretion system F domain [Ruminococcus albus 7]
gi|315450197|gb|ADU23760.1| Type II secretion system F domain [Ruminococcus albus 7]
Length = 292
Score = 88.0 bits (217), Expect = 2e-15, Method: Composition-based stats.
Identities = 30/187 (16%), Positives = 78/187 (41%), Gaps = 2/187 (1%)
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
++ +++ + + + I+I +VG P +S +K + + + + AL
Sbjct: 62 LILMLFFPLTGSVGAWFLSKELWLSIIIFFVGLFIPKFIVSYTEKKHKKNFEERYARALR 121
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
L + +G+++ QA+ + + +E +++ + AF + R
Sbjct: 122 QLSSSLRAGMTLQQAVEDLC-KCPFIHYEIKKEFRQINSDIQLGFSISEAFGHMAERIPT 180
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP 308
V++ A+ G S +S+ ++ + S ++ E K K+T+ + + LP
Sbjct: 181 ADVKDVVSAIKMQSLVGGSEAESIEIITNNINSRMMLRKEIKTLFASTKMTI-IGMDILP 239
Query: 309 VLILVII 315
+I++ +
Sbjct: 240 AIIILFL 246
>gi|226309727|ref|YP_002769621.1| hypothetical protein BBR47_01400 [Brevibacillus brevis NBRC 100599]
gi|226092675|dbj|BAH41117.1| hypothetical membrane protein [Brevibacillus brevis NBRC 100599]
Length = 304
Score = 88.0 bits (217), Expect = 2e-15, Method: Composition-based stats.
Identities = 50/313 (15%), Positives = 123/313 (39%), Gaps = 12/313 (3%)
Query: 14 LAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLR 73
L ++I +V+IF +Y + + ++ + +++ ++ +
Sbjct: 4 LVLSILVSVAIF--LYGLPSCVSKGEPIS---ATLLGRIDSVKQAKLEQSFQQGRKRWTL 58
Query: 74 TRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGII 133
R + + ++ + + I L G + SL +++ RL+ I+ +
Sbjct: 59 VRSLEKNQVLLQHFYKWTGVDKKKIQETLARLGI--DISLTEIVLFRLISM--CFIVSSL 114
Query: 134 WIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLIC 193
+ + G + I + P++ + + ++ ++ I+ P ++
Sbjct: 115 ASLSISMVHGEKITMVTGLPLTISLFLYLLPNMLLDRVDKRAKAEIREQVPIFFSIVQSL 174
Query: 194 VESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRN 253
VE+G+ + QA+++ A + L E+ N + A E R ++D +
Sbjct: 175 VEAGMPLQQAVKQTARRFDAR---LGRELASLEMGEKRHGNWRKALEELAFRWEVDSLTT 231
Query: 254 ATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILV 313
+ ++ + G SI L V V E ++ EA L +L +I+ L+ +
Sbjct: 232 IALEMNEAMKKGVSISQMLSVQVEEQVRQQEDEAATHMNRLNIRLLPFVIMLMGLPLLFL 291
Query: 314 IIGPAILSIIDTM 326
++GPA + I +++
Sbjct: 292 VMGPAFIGIGESL 304
>gi|107028241|ref|YP_625336.1| type II secretion system protein [Burkholderia cenocepacia AU 1054]
gi|105897405|gb|ABF80363.1| type II secretion system protein [Burkholderia cenocepacia AU 1054]
Length = 325
Score = 88.0 bits (217), Expect = 2e-15, Method: Composition-based stats.
Identities = 50/291 (17%), Positives = 95/291 (32%), Gaps = 25/291 (8%)
Query: 18 ITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDS 77
I T V++ I + R +R + S L+ R
Sbjct: 10 ILTFVAVVLSIEGIYQWWNARHGAAARR-----IESRIRAMSAGGNVQQERLSILKKRML 64
Query: 78 KSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFG 137
+ F +L L+ V + ++ +G I L + W
Sbjct: 65 DESKPF-DRLLLRLPRV-HALDLVIQQSGLDWTLPKLITLSATFA--------ALAWFVA 114
Query: 138 YDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESG 197
L A + + V P ++ KR ++R PD D++ + SG
Sbjct: 115 SFARLPQ------LAAVPVALVAGWLPMTYVLRCRAKRMRKLERQLPDICDMIARALRSG 168
Query: 198 ISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQA 257
S L V ++ S P+ E +T E+++ + A N R + +R A
Sbjct: 169 HSFTSTLGMVGDEF---SEPMGGEFRVTFDEVNYGVSLHDALTNLATRVPVQDLRYFVIA 225
Query: 258 LIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP 308
++ G ++ + L + R + + + S +L+ I+ LP
Sbjct: 226 VLIQRETGGNLAELLESIAGLIRERFKLFDKVRVLSAEGRLSA-WILGLLP 275
>gi|153834070|ref|ZP_01986737.1| Flp pilus assembly protein TadB [Vibrio harveyi HY01]
gi|148869625|gb|EDL68615.1| Flp pilus assembly protein TadB [Vibrio harveyi HY01]
Length = 322
Score = 88.0 bits (217), Expect = 2e-15, Method: Composition-based stats.
Identities = 40/234 (17%), Positives = 94/234 (40%), Gaps = 23/234 (9%)
Query: 96 ENIVNKLRAAGFRSEYSLNILL--VVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAV 153
+ + KL AG ++ + L + V +I + G +W
Sbjct: 78 DGLKKKLELAGISMGFTRFLFLSFLAGTAVGLIIFVFGQVWY----------------MC 121
Query: 154 ILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGG 213
+ + + A ++ ++ R + P+ALD++ +++G I QA V ++
Sbjct: 122 LGVTIACWVAIYFYLQKMIADRLMKFEEQLPEALDIIKRVLQAGQPITQAFGEVGREV-- 179
Query: 214 QSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLR 273
S PL E L T L++ + ++A RT + + A++ G ++ +++
Sbjct: 180 -SAPLGPEFLNTFNLLNYGYDLRLAIMQMSERTPTVSMLAFSSAVLLQKETGGNLVENIE 238
Query: 274 VLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVI--IGPAILSIIDT 325
L R+ + + K S +++ +++ L ++I + P + ++ T
Sbjct: 239 KLSRILRARFKLARKIKTISAESRMSAWVLVLAPFGLYIIISLVRPDYIELLHT 292
>gi|300692335|ref|YP_003753330.1| Tad secretion system, pilus assembly protein [Ralstonia
solanacearum PSI07]
gi|299079395|emb|CBJ52066.1| Tad secretion system, pilus assembly protein [Ralstonia
solanacearum PSI07]
Length = 325
Score = 88.0 bits (217), Expect = 2e-15, Method: Composition-based stats.
Identities = 53/316 (16%), Positives = 128/316 (40%), Gaps = 27/316 (8%)
Query: 14 LAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLR 73
A ++ AV + ++ + + + KR+ + L + KD+ +S L+
Sbjct: 8 FAASLFIAVVLGAIGFYL-WWNSRHSPTAKRL------NQRLEMALFSLSGKDAQTSILK 60
Query: 74 TRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGII 133
R + + L+ I + L +G ++S++ L + L +P++ + +
Sbjct: 61 QRVLAESTDIAR--LLQRIPHVNALDMTLLQSGL--DWSVSRFLTLTLALPVVACTVAAL 116
Query: 134 WIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLIC 193
+ P L +G L G P+++++ +R ++ P+A DLL
Sbjct: 117 FA--------PPLVLLLGIAALAGA----LPTLYLARCRARRLRKLEAQLPEATDLLARA 164
Query: 194 VESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRN 253
+ +G S AL ++ P++ E L +E+++ A F R ++ +R
Sbjct: 165 LRAGHSFPSALDMAGSEL---PAPIASEFALVFSEINYGVPMGEALAAFSRRVPIEDLRF 221
Query: 254 ATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILV 313
A++ G ++ + L + + R + + + S +L I+ +P ++ V
Sbjct: 222 LVIAVLIQRESGGNLAEILDNIGTLIRKRLQLLDKIRVLSAEGRL-GGWILSLMPPVLGV 280
Query: 314 IIGPAILSIIDTMKDH 329
++ +++ ++ H
Sbjct: 281 LMYFLNPTLVSSLWTH 296
>gi|78186532|ref|YP_374575.1| TadB protein [Chlorobium luteolum DSM 273]
gi|78166434|gb|ABB23532.1| TadB protein [Chlorobium luteolum DSM 273]
Length = 322
Score = 88.0 bits (217), Expect = 2e-15, Method: Composition-based stats.
Identities = 50/270 (18%), Positives = 100/270 (37%), Gaps = 13/270 (4%)
Query: 62 SLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRL 121
S + RL+T + + ++ D I LR G Y LV+R
Sbjct: 30 SAGSKTKKQRLQTVRDAVHSDGKRSGGMQNAQKDSAIEKWLR--GRFKAYVQLENLVLRA 87
Query: 122 VVPI----IFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQS 177
P+ I +++ ++ L + V+ G P +W+ L +R
Sbjct: 88 HGPLTTRRIMILMSTLFTGVMALGLLRHTHPLLTLVVAAAVAGM--PVLWLMQLADRRLR 145
Query: 178 SIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQV 237
+ + P+ALD + + +G S+ A+ V ++ G P+ E + E+ F +
Sbjct: 146 AFEDKLPEALDHISRALRAGHSLAPAMGMVGQEFGE---PIGYEFKIVFDEIGFGIPFKE 202
Query: 238 AFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPK 297
A R Q + +L G ++ + L R + + + S +
Sbjct: 203 AIGRLAERMQSTDLNFFVISLTIQHETGGNLTELFDGLARTIRHRIKLRGKIRTLSSEGR 262
Query: 298 LTVPMIIFFLPVLILV--IIGPAILSIIDT 325
+ ++ VL++V +I P +S++ T
Sbjct: 263 ASGWVLGSMPFVLMMVLSLINPEYISLLWT 292
>gi|281356957|ref|ZP_06243447.1| Type II secretion system F domain protein [Victivallis vadensis
ATCC BAA-548]
gi|281316515|gb|EFB00539.1| Type II secretion system F domain protein [Victivallis vadensis
ATCC BAA-548]
Length = 294
Score = 88.0 bits (217), Expect = 2e-15, Method: Composition-based stats.
Identities = 43/205 (20%), Positives = 85/205 (41%), Gaps = 5/205 (2%)
Query: 110 EYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWIS 169
+ +L + L + +I+ II + + Y ++ + + G V F P + +
Sbjct: 52 QMPARRVLDLSLALATSGIIISIILMSTL--VEGYSWKWGIFVALFFGVVLFLLPRLVLR 109
Query: 170 NLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAEL 229
L +R DAL ++ +++G SI+QAL VAE P+S E L I E+
Sbjct: 110 QLKVRRLEKFNFQLEDALGVISSSLKAGFSINQALEEVAEQ---NIHPISVEFRLLIQEI 166
Query: 230 SFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEK 289
+ A EN R + + A++ + + G + +L + S R + +
Sbjct: 167 RLGVPVEQALENMNRRLRSEDFELVATAILTARQTGGELTGTLERVASLIRERVRISNKV 226
Query: 290 KAASLGPKLTVPMIIFFLPVLILVI 314
+A + +L +I L++ +
Sbjct: 227 RALTALGRLQAILIALTPVALLIGL 251
>gi|269966899|ref|ZP_06180972.1| putative tight adherence TadB-related transmembrane protein [Vibrio
alginolyticus 40B]
gi|269828566|gb|EEZ82827.1| putative tight adherence TadB-related transmembrane protein [Vibrio
alginolyticus 40B]
Length = 322
Score = 88.0 bits (217), Expect = 2e-15, Method: Composition-based stats.
Identities = 50/301 (16%), Positives = 121/301 (40%), Gaps = 35/301 (11%)
Query: 30 AVVIPSLGSGELEKRM-KSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLN 88
A+++PS G K++ K + + + ++ I+ L+++S ++ L ++ + +
Sbjct: 22 ALILPSAGKKVKHKQLIKRIHESHKHIDQESISLLRENSL------KNLSPLERWLVRFS 75
Query: 89 LKAILVDENIVNKLRAAGFRSEYSLNILLVV--RLVVPIIFLILGIIWIFGYDKLLEYPF 146
L ++ KL AG +S I L V + + G +W
Sbjct: 76 LF-----DSFKKKLELAGIHMGFSRFIFLTFLGGTAVGLFLFLFGQVWYL---------- 120
Query: 147 QLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRR 206
+ + + + +I + R + P+ALD++ +++G I Q
Sbjct: 121 ------CAGVAFACWVSVYFYIQKRIADRLMKFEEQLPEALDIIKRVLQAGQPITQGFGE 174
Query: 207 VAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGT 266
V ++ S PL E + T L++ + ++A RT + + A++ G
Sbjct: 175 VGREV---SAPLGPEFMNTFNLLNYGYDLRLAIMQMSERTPTVSMLAFSSAVLLQKETGG 231
Query: 267 SIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVI--IGPAILSIID 324
++ +++ L R+ + + K S +++ +++ L ++I + P + ++
Sbjct: 232 NLVENIEKLSHILRARFKLARKIKTISAESRMSAWVLVLAPFGLYVIISLVRPEYIELLH 291
Query: 325 T 325
T
Sbjct: 292 T 292
>gi|317154601|ref|YP_004122649.1| type II secretion system F domain-containing protein [Desulfovibrio
aespoeensis Aspo-2]
gi|316944852|gb|ADU63903.1| Type II secretion system F domain protein [Desulfovibrio
aespoeensis Aspo-2]
Length = 324
Score = 87.6 bits (216), Expect = 2e-15, Method: Composition-based stats.
Identities = 46/317 (14%), Positives = 113/317 (35%), Gaps = 26/317 (8%)
Query: 11 ATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASS 70
L +A+ V +F L+ V L + ++ A ER R ++ ++ +
Sbjct: 2 PVSLLIALGGGVIVFLLLTGVAS-------LTRAGQAAARERVQHRLRRFALTGSEAGAI 54
Query: 71 RLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLIL 130
L + S L + + + + A R + +L
Sbjct: 55 DLVLKQSAMSSMPWFNRMLSGMRLAAGLKRTISQANARGTAGVYLLACG----------- 103
Query: 131 GIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLL 190
+ R+ +++ ++ P + L +R + P+ALDL+
Sbjct: 104 ---LLGLLGAYAGLAMADRLWVGMVLAWLLGSMPVWHLRRLKARRMGRFQAQLPEALDLM 160
Query: 191 LICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDC 250
+++G + +R VA + P+ E T+ E+++ + A N R ++
Sbjct: 161 SRALKAGHTFGGGMRMVANEFAD---PIGGEFGKTLDEINYGMDVDRALANLQLRVDVED 217
Query: 251 VRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMI--IFFLP 308
++ ++ G ++ + + + R + + + S +++ ++ + F
Sbjct: 218 LKFFVVSVNIQRETGGNLAEIIANIARLVRERFALFGKVRVLSAEGRISALLLSALPFFI 277
Query: 309 VLILVIIGPAILSIIDT 325
+L I P +S++ T
Sbjct: 278 AGVLYFINPDYISLLWT 294
>gi|170734861|ref|YP_001773975.1| type II secretion system protein [Burkholderia cenocepacia MC0-3]
gi|169820899|gb|ACA95480.1| type II secretion system protein [Burkholderia cenocepacia MC0-3]
Length = 325
Score = 87.6 bits (216), Expect = 2e-15, Method: Composition-based stats.
Identities = 48/291 (16%), Positives = 94/291 (32%), Gaps = 25/291 (8%)
Query: 18 ITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDS 77
I T V++ I + R +R + S L+ R
Sbjct: 10 ILTFVAVVLSIEGIYQWWNARHGAAARR-----IESRIRAMSAGGNVQQERLSILKKRML 64
Query: 78 KSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFG 137
+ F +L L+ V + ++ +G I L + W
Sbjct: 65 DESKPF-DRLLLRLPRV-HALDLVIQQSGLDWTLPKLITLSATFA--------ALAWFVA 114
Query: 138 YDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESG 197
+ A + + V P ++ KR ++R PD D++ + SG
Sbjct: 115 SFARMPQ------LAAVPVALVAGWLPMTYVLRCRAKRMRKLERQLPDICDMIARALRSG 168
Query: 198 ISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQA 257
S L V ++ P+ E +T E+++ + A N R + +R A
Sbjct: 169 HSFTSTLGMVGDEF---PEPMGGEFRVTFDEVNYGVSLHDALTNLATRVPVQDLRYFVIA 225
Query: 258 LIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP 308
++ G ++ + L + R + + + S +L+ I+ LP
Sbjct: 226 VLIQRETGGNLAELLESIAGLIRERFKLFDKVRVLSAEGRLSA-WILGLLP 275
>gi|328952511|ref|YP_004369845.1| Type II secretion system F domain protein [Desulfobacca acetoxidans
DSM 11109]
gi|328452835|gb|AEB08664.1| Type II secretion system F domain protein [Desulfobacca acetoxidans
DSM 11109]
Length = 317
Score = 87.6 bits (216), Expect = 2e-15, Method: Composition-based stats.
Identities = 54/313 (17%), Positives = 109/313 (34%), Gaps = 31/313 (9%)
Query: 16 VAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTR 75
+ A +F ++ +V+ E K+ + + R + ++ + + R TR
Sbjct: 1 MTALIAGLVFLTVFGLVLAFYFGYEDLKQARKDQLIRSLTVGRRRGDRMPEEEAVRQETR 60
Query: 76 DSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWI 135
L V L+ ++ AG SL +V + +F++L ++
Sbjct: 61 FLTMLLTRVDLSGLETLIQS-------AWAGL----SLERFFLVSVCCGFVFMLLPLLLF 109
Query: 136 FGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVE 195
L G C P + +R+ + PDA+D ++ ++
Sbjct: 110 ------------GNAVLSFLAFAAGLCLPLGVLMIRRARREEKLVAQLPDAIDTIVRSLK 157
Query: 196 SGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQ-MDCVRNA 254
G S+D A VA G P+ + E++ + +NF R + VR
Sbjct: 158 VGQSVDAATLEVA---RGFPPPIGADFRAINEEMAMGLPFETVIKNFQRRYPRLPDVRIL 214
Query: 255 TQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP---VLI 311
+ G + D L L S R+ + +A++ + T I+ LP +
Sbjct: 215 CATFVIQRETGGKLTDILAGLASTIRARLHFQRRVRASTAEGRTTA-FILGILPLGFAAV 273
Query: 312 LVIIGPAILSIID 324
++ P + +
Sbjct: 274 TWLLRPEYMRVFR 286
>gi|197295160|ref|YP_002153701.1| flp type pilus assembly protein [Burkholderia cenocepacia J2315]
gi|195944639|emb|CAR57243.1| flp type pilus assembly protein [Burkholderia cenocepacia J2315]
Length = 325
Score = 87.6 bits (216), Expect = 2e-15, Method: Composition-based stats.
Identities = 51/292 (17%), Positives = 102/292 (34%), Gaps = 27/292 (9%)
Query: 18 ITTAVSIFSLIYAVVIPSLGS-GELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRD 76
I T V++ I + G +R++S +R + S L+ R
Sbjct: 10 ILTFVAVVLSIEGIYQWWNARHGTAARRIES------RIRAMSAGGNVQQERLSILKKRM 63
Query: 77 SKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIF 136
+ F +L L+ V + ++ +G I L F+
Sbjct: 64 LDESKPF-DRLLLRLPRV-HTLDLVIQQSGLDWTLPKLITLSATFAALTWFVA------- 114
Query: 137 GYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVES 196
+ P + V + G P +++ +R ++R PD D++ + S
Sbjct: 115 ---SFMRLPQLVAVPLALFAG----WLPMLYVLRCRARRMRKLERQLPDICDMIARALRS 167
Query: 197 GISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQ 256
G S L V ++ S P+ E +T E+++ + A N R + +R
Sbjct: 168 GHSFTSTLGMVGDEF---SEPMGGEFRVTFDEVNYGVSLHDALMNLATRVPVQDLRYFVI 224
Query: 257 ALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP 308
A++ G ++ + L + R + + + S +L+ I+ LP
Sbjct: 225 AVLIQRETGGNLAELLDSIAGLIRERFKLFDKVRVLSAEGRLSA-WILGLLP 275
>gi|46201039|ref|ZP_00055942.2| COG4965: Flp pilus assembly protein TadB [Magnetospirillum
magnetotacticum MS-1]
Length = 331
Score = 87.6 bits (216), Expect = 2e-15, Method: Composition-based stats.
Identities = 57/330 (17%), Positives = 122/330 (36%), Gaps = 38/330 (11%)
Query: 5 FFDLFDATELAVAITTAVSIFSLIYAVVIPSLG------SGELEKRMKSVAVEREILRKQ 58
FDL + +A+ V++ + AV+ SL L++R+ +VA ++
Sbjct: 1 MFDLLERMPAEIAVL--VAVMLVTLAVLGWSLFTLLHGPRARLKRRLAAVAGGSHGAERR 58
Query: 59 QITSL-QKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILL 117
+ Q+ S +RL+ + RNF +L +L AG+ E + L
Sbjct: 59 LAGRMPQRKSVQARLKAVEGARARNFGWRL-----------REQLLQAGWNLE--VWHYL 105
Query: 118 VVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQS 177
+ + LG + V + + +G P + + KR
Sbjct: 106 AGSGGLTLAVFALGQVLGLAM-----------VWSGLAALCLGVGVPKLVLGVAAGKRLK 154
Query: 178 SIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQV 237
+ + DALD+++ + SG+ + + + + ++ P+ E
Sbjct: 155 AFTAQFADALDVVVRGIRSGLPLGECIAIIGREMPD---PVGAEFRQITEGTRIGLTLHE 211
Query: 238 AFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPK 297
A R M +R L + G ++ ++L L R+ + M + + + +
Sbjct: 212 AMTRAVERMPMAEMRYFAIVLAIQQQTGGNLAETLAKLSEVLRARKRMRDKVLSYAAEAR 271
Query: 298 LTVPMI--IFFLPVLILVIIGPAILSIIDT 325
+ +I + L V +L ++ P + ++ T
Sbjct: 272 ASAAIIGSLPLLVVAMLGMLAPQYIGVLFT 301
>gi|284048523|ref|YP_003398862.1| Type II secretion system F domain protein [Acidaminococcus
fermentans DSM 20731]
gi|283952744|gb|ADB47547.1| Type II secretion system F domain protein [Acidaminococcus
fermentans DSM 20731]
Length = 321
Score = 87.6 bits (216), Expect = 3e-15, Method: Composition-based stats.
Identities = 38/273 (13%), Positives = 91/273 (33%), Gaps = 19/273 (6%)
Query: 43 KRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKL 102
+R + V+ + Q +++K LR R + ++ + + +
Sbjct: 26 QRRREVSQRIQQYAGYQPAAVRKTPFWEILRNRFHELFAERNRR--PGRPWNRKKLDLMM 83
Query: 103 RAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFC 162
AG L+ + V I + ++++ L G + L G V
Sbjct: 84 IQAGLP--------LLGKEYVAIAGGLAVLVFLVTAVAGRSLVTGLLGGILTLFGAV--- 132
Query: 163 APSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEM 222
+++ + +R+ + +R D L L+ + +G S Q + ++ ++ P+S E
Sbjct: 133 ---IFLQRRISRRKEAFERQLADCLTLVSNSLRAGFSFLQTMEIISREMQ---PPMSTEF 186
Query: 223 LLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSE 282
+ S + A + R + A++ + G ++ L +
Sbjct: 187 ANVMRNTSLGRTMEDALQEMDQRVGNEDFSLVITAVLIQQQVGGNLATILDTIRETISER 246
Query: 283 RLMEAEKKAASLGPKLTVPMIIFFLPVLILVII 315
+ E + K + ++ L L
Sbjct: 247 IRLRREVGTLTAQGKFSGLVLTCIPVALGLFFA 279
>gi|113866737|ref|YP_725226.1| flp pilus assembly protein TadB [Ralstonia eutropha H16]
gi|113525513|emb|CAJ91858.1| flp pilus assembly protein TadB [Ralstonia eutropha H16]
Length = 325
Score = 87.2 bits (215), Expect = 3e-15, Method: Composition-based stats.
Identities = 46/318 (14%), Positives = 115/318 (36%), Gaps = 38/318 (11%)
Query: 15 AVAITTAVSIFSLIYAVVIPSL-----GSGELEKRMKSVAVEREILRKQQITSLQKDSAS 69
A I V++ + + + + +E R+++++ + +Q++ L+K +
Sbjct: 7 AFGILLFVAVVLCVEGIYLWWSNAHGPAAKRIEARLRALSAG-GHVSAEQLSILKKRMLA 65
Query: 70 SRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLI 129
R + V L+ L +G S +S+ LL +
Sbjct: 66 GSPRLQKWLMSVPRVGALD-----------RWLEQSG--STWSVAQLLG--YCAMVALCT 110
Query: 130 LGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDL 189
+ +I + L + ++ + KR ++ DA+D+
Sbjct: 111 VALIPLLPIPVPLVLAGAALAALLPVLHVM----------RQRAKRIKRMEAQLADAVDM 160
Query: 190 LLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMD 249
+ + +G S AL V +++ P+ E T E+++ A N R +
Sbjct: 161 ISRALRAGHSFSGALGMVGQEMKA---PIGPEFRTTFEEINYGVALDEAMTNLAIRVPVG 217
Query: 250 CVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP- 308
+R A++ G ++ + L + + R + + + S K++ ++ LP
Sbjct: 218 DLRYFVIAVLIQRESGGNLAEILDTIGTMVRERLKLFDKIRVLSAEGKMSA-WVLGLLPF 276
Query: 309 --VLILVIIGPAILSIID 324
+++++ P + ++
Sbjct: 277 GTAGLILVVNPGFMKVLW 294
>gi|87199541|ref|YP_496798.1| type II secretion system protein [Novosphingobium aromaticivorans
DSM 12444]
gi|87135222|gb|ABD25964.1| type II secretion system protein [Novosphingobium aromaticivorans
DSM 12444]
Length = 328
Score = 87.2 bits (215), Expect = 3e-15, Method: Composition-based stats.
Identities = 34/260 (13%), Positives = 93/260 (35%), Gaps = 7/260 (2%)
Query: 58 QQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILL 117
+Q + L + + + K+N IV +LR R+ S+
Sbjct: 32 RQRNRNAVNKRLKLLASGMDREAVTNLLKVNHAGSFRRRGIVVRLRRMLARTGMSITPDR 91
Query: 118 VVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQS 177
++ + + + ++ + + + ++ G P V ++ +KR+
Sbjct: 92 ILAGMAIATAVAIILLSLLAFSLGTTITLGTILLICVVGLGFGAGIPYVVLNRSAEKRRK 151
Query: 178 SIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQV 237
+++ + A+D+ + +G + A+ ++ ++ P+ E L E+++ N
Sbjct: 152 RMEQQFAPAVDIFTRALRAGHPVASAISLLSTEMAD---PIGTEFGLVADEIAYGANLND 208
Query: 238 AFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKA----AS 293
+ R +++ + L G ++ + L L S R + + +A
Sbjct: 209 SLVALAERWELEDLHMFAVCLSVQSETGGNLAEILGNLASVIRDRASLYQKVRALSSEGR 268
Query: 294 LGPKLTVPMIIFFLPVLILV 313
+ + + VL ++
Sbjct: 269 ASAWMLSVLPALTMLVLFMI 288
>gi|291526238|emb|CBK91825.1| hypothetical protein EUR_28800 [Eubacterium rectale DSM 17629]
Length = 408
Score = 87.2 bits (215), Expect = 3e-15, Method: Composition-based stats.
Identities = 29/135 (21%), Positives = 62/135 (45%), Gaps = 8/135 (5%)
Query: 173 QKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSV-------PLSEEMLLT 225
++R ++ +P+ + + + + SG++++QA R+ + P EEML+T
Sbjct: 250 KERNIQLQLEYPEIVSKMAVLMGSGMTVEQAWNRITARYLDKRKNNDENIMPAYEEMLVT 309
Query: 226 IAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGT-SIGDSLRVLVSETRSERL 284
E+S + A+ F R ++ C + + ++QS G+ + + L+ + ER
Sbjct: 310 EREISDGVTGRKAYAGFAERVKLPCYQKLVRIILQSIHKGSKGVCEMLKKESEDAFDERR 369
Query: 285 MEAEKKAASLGPKLT 299
+ A K G K+
Sbjct: 370 LLALKLGEEAGTKML 384
>gi|78486065|ref|YP_391990.1| type II secretion system protein [Thiomicrospira crunogena XCL-2]
gi|78364351|gb|ABB42316.1| Flp (type IV) pilus assembly protein, TadC homolog [Thiomicrospira
crunogena XCL-2]
Length = 315
Score = 87.2 bits (215), Expect = 3e-15, Method: Composition-based stats.
Identities = 54/283 (19%), Positives = 108/283 (38%), Gaps = 31/283 (10%)
Query: 18 ITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDS 77
+ ++I + R K A++ + R +S +++ ++ +
Sbjct: 7 LIVVLAIMMPFLVLAAGFYFKSN---RQKKEALDTLMQRVGIESSQKQNYRAAYHTIQQK 63
Query: 78 KSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFG 137
S+ + L KA L D IV +L L++ + +F
Sbjct: 64 DSILRWGASLLKKAGLQDTKIVIRL-------------------------LVIQSLLLFF 98
Query: 138 YDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESG 197
LL F G +LI + PS +I ++RQ+ +++ +P+ LD ++ ++SG
Sbjct: 99 SAYLLSTRFNHLDGKAVLIAILLPLLPSFFILFKKKQRQNRLRQQFPEMLDAIVRALQSG 158
Query: 198 ISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQA 257
ID AL +AE+ PL +E+ +L+ + + +F R ++ +
Sbjct: 159 YGIDGALSMIAEEFRA---PLGKEVKEVNRQLTLGISMRDILRDFQTRIEIPEAQFFVVT 215
Query: 258 LIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV 300
LI G + L L R + +A+ K + + T
Sbjct: 216 LIIQRETGGQLAPILEELSRLMRRREMFQAKLKTLTAESRFTA 258
>gi|328474277|gb|EGF45082.1| putative tight adherence TadB-like transmembrane protein [Vibrio
parahaemolyticus 10329]
Length = 322
Score = 87.2 bits (215), Expect = 3e-15, Method: Composition-based stats.
Identities = 49/299 (16%), Positives = 121/299 (40%), Gaps = 31/299 (10%)
Query: 30 AVVIPSLGSGELEKRM-KSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLN 88
A+++PS G K++ K + + + ++ I+ L+++S ++ L ++ + +
Sbjct: 22 ALILPSAGKKVKHKQLIKRIHESHKHIDQESISLLRENS------LKNLSPLERWLVRFS 75
Query: 89 LKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQL 148
L E+ KL AG +S I + + +G++ +
Sbjct: 76 LF-----ESFKKKLELAGISMGFSRVIFFTF-----LSGVAVGLLLYL---------WGQ 116
Query: 149 RVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVA 208
+ + + ++ + R + P+ALD++ +++G I QA V
Sbjct: 117 VWYLCAGVAVACWASAYFYLQKKIADRLMKFEEQLPEALDIIKRVLQAGQPITQAFGEVG 176
Query: 209 EDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSI 268
++ S PL E L T L++ + ++A RT + + A++ G ++
Sbjct: 177 REV---SAPLGPEFLNTFNLLNYGYDLRLAIMQMSERTPTVSMLAFSSAVLLQKETGGNL 233
Query: 269 GDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVI--IGPAILSIIDT 325
+++ L R+ + + K S +++ +++ L ++I + P + ++ T
Sbjct: 234 VENIEKLSHILRARFKLARKIKTISAESRMSAWVLVLAPFALYVIISLVRPEYIELLHT 292
>gi|229816457|ref|ZP_04446758.1| hypothetical protein COLINT_03511 [Collinsella intestinalis DSM
13280]
gi|229807999|gb|EEP43800.1| hypothetical protein COLINT_03511 [Collinsella intestinalis DSM
13280]
Length = 222
Score = 87.2 bits (215), Expect = 3e-15, Method: Composition-based stats.
Identities = 37/203 (18%), Positives = 75/203 (36%), Gaps = 4/203 (1%)
Query: 118 VVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQS 177
V+ L W+ D LE ++ G ++ + L + +
Sbjct: 17 AAIAVIGPGVLCGLAAWLGSEDGALEMARACCAHVRVVGGLAFRKMRALALEMLRPRSRG 76
Query: 178 SIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLP-NRQ 236
+ D++ + + +G+S D +L E G+S L++ M + +R
Sbjct: 77 IGMGEVAEMTDIVRLGLSAGLSFDASLSLYCE---GRSGELAQLMEKALFCWQVGVTSRD 133
Query: 237 VAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGP 296
A + + + + A+ Q+ G + ++L E R+ E++
Sbjct: 134 EALDRVAQDAGVRALGSFAAAVSQALELGAPLAETLEGQGREMRAAHRAHVEREIERAPV 193
Query: 297 KLTVPMIIFFLPVLILVIIGPAI 319
KL +P LP L+L I+GP +
Sbjct: 194 KLLIPTGTLILPALLLSIVGPLL 216
>gi|15679697|ref|NP_276815.1| hypothetical protein MTH1703 [Methanothermobacter
thermautotrophicus str. Delta H]
gi|2622834|gb|AAB86175.1| unknown [Methanothermobacter thermautotrophicus str. Delta H]
Length = 359
Score = 87.2 bits (215), Expect = 3e-15, Method: Composition-based stats.
Identities = 39/203 (19%), Positives = 89/203 (43%), Gaps = 4/203 (1%)
Query: 125 IIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQ-KRQSSIKRAW 183
+I ++ G ++ F + +G +++ + +++ NL + KR S R
Sbjct: 128 LIMILGGGSGAVLLVVMVLLGFGIEIGLAMMLAVLFMAIIIIFLPNLQRGKRSSEASREL 187
Query: 184 PDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFY 243
P AL + ++SG+ + ++R VA LSEE T+ E+ + + A
Sbjct: 188 PFALRQMATELKSGLGLHDSMRSVA---MSGYGALSEEFARTLEEIKYGETTENALIEMS 244
Query: 244 NRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMI 303
NR + D ++ A + ++ G + +L V+ + E M+ + + L + M
Sbjct: 245 NRIESDGLKRAVYQITRTLNSGGDLSKTLNVIADDIAYEMRMKLKDYSQKLNSFTMIYMF 304
Query: 304 IFFLPVLILVIIGPAILSIIDTM 326
+ L +I +++ A +++ ++
Sbjct: 305 LAILGPVIFLVMLLAAATVMGSV 327
>gi|167624198|ref|YP_001674492.1| type II secretion system protein [Shewanella halifaxensis HAW-EB4]
gi|167354220|gb|ABZ76833.1| type II secretion system protein [Shewanella halifaxensis HAW-EB4]
Length = 325
Score = 86.9 bits (214), Expect = 4e-15, Method: Composition-based stats.
Identities = 58/306 (18%), Positives = 119/306 (38%), Gaps = 24/306 (7%)
Query: 9 FDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSA 68
+ ++ V++ L A+ +P A+ R+ L+K S
Sbjct: 1 MFSNQVIFLGLVFVAVLFLSQALFLPVYSPQRANS-----ALVRKRLKKLSEASGDITYE 55
Query: 69 SSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFL 128
+S LR L + L ++ EN+ +L A +Y L + L + +
Sbjct: 56 TSLLRKSRLGKLGPIGRWLERFQLI--ENLSYRLELA----DYKLMGHQFIFLALFSASI 109
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
+ ++W + +++ A + V + ++ KR I+ ++PDALD
Sbjct: 110 VASVVWFYLGEQI----------AAGFMFVVTLFIFNFKLNRDTAKRMEKIEESFPDALD 159
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
+L +++G S A++ V E++ G PL++E L A +++ + + A F R
Sbjct: 160 VLRRALQAGYSFSDAIKLVTEEMEG---PLAKEFSLMFANINYSKDTKRALLGFIERVPS 216
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP 308
A++ G ++ +++ L R + S +L+ ++I
Sbjct: 217 VSAMAFASAVMVQKETGGNLAENINNLARVIRLRFTFRRRVRTLSAEGRLSAWILILLPF 276
Query: 309 VLILVI 314
VL VI
Sbjct: 277 VLFAVI 282
>gi|322434107|ref|YP_004216319.1| Type II secretion system F domain protein [Acidobacterium sp.
MP5ACTX9]
gi|321161834|gb|ADW67539.1| Type II secretion system F domain protein [Acidobacterium sp.
MP5ACTX9]
Length = 320
Score = 86.9 bits (214), Expect = 4e-15, Method: Composition-based stats.
Identities = 52/301 (17%), Positives = 110/301 (36%), Gaps = 27/301 (8%)
Query: 18 ITTAVSIFSLI--YAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTR 75
+ + I +LI + +V+ L + EK + ++++ + D+ + T
Sbjct: 1 MLVTIFIGALILSFGLVLFLLRPDDAEKAL-----------ERKLRVISSDARKEQAETE 49
Query: 76 DSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWI 135
+ + + + E + L L++ + ++GI +
Sbjct: 50 GYALTVKKAEGILFEIGEMVER---------YHFSQDLQQLILHSGTETTVGSVIGISAV 100
Query: 136 FGYDKLLEYPFQLRVGAV-ILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICV 194
L L + V + VG A + + R + A PDA+DL+ +
Sbjct: 101 LAVAAALLAHIFLGIYIVDAVAFVVGGSARWMQLKWKKSSRLGKFEEALPDAIDLMARAL 160
Query: 195 ESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNA 254
+G ++ A+ VAE+ + PL+ E + + F + A +R +
Sbjct: 161 RAGHAMSSAIEVVAEE---SAEPLAGEFAIVFQQQKFGLQFRDALLQLGDRVPSKDLSFL 217
Query: 255 TQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVI 314
A++ G + D L R ++ E + + +LT I+ LPV++L +
Sbjct: 218 ITAILVQKETGGDLTDVLDRTTRVIRERIRIQGEIRTYTAQGRLTG-WILSALPVVMLCL 276
Query: 315 I 315
I
Sbjct: 277 I 277
>gi|119717341|ref|YP_924306.1| type II secretion system protein [Nocardioides sp. JS614]
gi|119538002|gb|ABL82619.1| type II secretion system protein [Nocardioides sp. JS614]
Length = 326
Score = 86.9 bits (214), Expect = 4e-15, Method: Composition-based stats.
Identities = 41/244 (16%), Positives = 85/244 (34%), Gaps = 17/244 (6%)
Query: 69 SSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFL 128
S+ R ++ +++ I ++L AG E + L
Sbjct: 54 SAGHRPDALAQASGAAARVLRSNRGLEDRIRHRLEGAGSHLESAEW-------------L 100
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
+L + V +L VG P +++ +R+ + A P+ L
Sbjct: 101 LLHTAVFVLTGLVGLLLGTGNVVLFVLFLVVGAVGPWLYLGVRRGRRRKAFSAAVPETLQ 160
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
L+ + +G+S+ Q+ V + P++ E + E + A E +R
Sbjct: 161 LMSGSLSAGLSLAQSAETVTREGAD---PVAAEFRRALVETRLGVPLEDALEGVADRFDS 217
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP 308
+ A A+ + G ++ + L + R + + A S +L+ ++ LP
Sbjct: 218 ADLAWAVMAIRIQRQVGGNLAELLDTVAETMREREYVRRQVAALSAEGRLSA-WVLGSLP 276
Query: 309 VLIL 312
V L
Sbjct: 277 VAFL 280
>gi|149911402|ref|ZP_01900020.1| hypothetical Flp pilus assembly protein TadB [Moritella sp. PE36]
gi|149805510|gb|EDM65515.1| hypothetical Flp pilus assembly protein TadB [Moritella sp. PE36]
Length = 321
Score = 86.9 bits (214), Expect = 4e-15, Method: Composition-based stats.
Identities = 34/188 (18%), Positives = 79/188 (42%), Gaps = 4/188 (2%)
Query: 127 FLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDA 186
+LIL ++ + + L + + + F + ++ + KR I++ +P+A
Sbjct: 95 YLILTLVLSLMV-AITSWFISLDLVFTVFCVLIMFTLMHLILNRNINKRMERIEQQFPEA 153
Query: 187 LDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRT 246
LD+L +++G + +++ V E++ G LS+E L ++F + A +F R
Sbjct: 154 LDILKRGLQAGYAFSDSIKLVYEELEG---ELSDEFKLMFNRINFGNDVHTALLSFVKRV 210
Query: 247 QMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFF 306
++ G ++ +++ L R + K S +L+ +++
Sbjct: 211 PSTSAMAFCSSVSIHKETGGNLAENIDNLSRIIRQRFTFKRRVKTLSAEGRLSGWVLVLT 270
Query: 307 LPVLILVI 314
VL V+
Sbjct: 271 PFVLFAVL 278
>gi|229825135|ref|ZP_04451204.1| hypothetical protein GCWU000182_00486 [Abiotrophia defectiva ATCC
49176]
gi|229790507|gb|EEP26621.1| hypothetical protein GCWU000182_00486 [Abiotrophia defectiva ATCC
49176]
Length = 404
Score = 86.9 bits (214), Expect = 4e-15, Method: Composition-based stats.
Identities = 34/155 (21%), Positives = 72/155 (46%), Gaps = 3/155 (1%)
Query: 169 SNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAE 228
++ R+ +K + + + +I + +G+S+ +++ E + LSEE+ LT+ E
Sbjct: 252 KKKIKDREEELKNGYTEFVGRFVILLGAGLSVSAIWKKL-EAGFASNKSLSEEIRLTLWE 310
Query: 229 LSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTS-IGDSLRVLVSETRSERLMEA 287
+ + A+ENF R + QS + G+ + L ER A
Sbjct: 311 TANGKTEREAYENFGKRIGGTQYAKFVSVINQSLKLGSGQLLARLEAESEAAMFERRNRA 370
Query: 288 EKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
+ KL +PM++ L +++L+I+ PA++++
Sbjct: 371 KVMGEVADTKLLLPMML-QLVLIMLIIMVPALMAV 404
>gi|308050052|ref|YP_003913618.1| Type II secretion system F domain protein [Ferrimonas balearica DSM
9799]
gi|307632242|gb|ADN76544.1| Type II secretion system F domain protein [Ferrimonas balearica DSM
9799]
Length = 324
Score = 86.9 bits (214), Expect = 4e-15, Method: Composition-based stats.
Identities = 50/289 (17%), Positives = 116/289 (40%), Gaps = 20/289 (6%)
Query: 23 SIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRN 82
+F + + KR + V+ + R Q +K + S L R K+
Sbjct: 10 CVFLAVILLSQALFIPVYRPKRGDTKVVKERLNRLAQEWGDEKAAVSIALENRLKKA-SP 68
Query: 83 FVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLL 142
K + + D + KL+ +G + LL + ++ +F L ++ + +
Sbjct: 69 LGKAMEQSQFVSD--LTFKLQQSG-------SRLLGYQFLLIALFSAL-VVAVAVWLWRS 118
Query: 143 EYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQ 202
E+ L ++L + ++ ++ KR I+ +P+ALD+L +++G +
Sbjct: 119 EWFLALTAAIIVLALF------NLKLNRDFNKRMEKIEEQFPEALDILRRGIQAGYAFPD 172
Query: 203 ALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSD 262
A++ E++ G P++ E + AE+++ + + A +F R + A+
Sbjct: 173 AIKLTYEEMDG---PIAYEFKVMFAEINYGKDTRRALLHFIERVPSVSAMAFSTAVQVQK 229
Query: 263 RYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLI 311
G ++ ++L L R + + K S +++ +++ L
Sbjct: 230 ETGGNLAENLENLTRIIRKRFRFQRQVKTFSAQGRMSAWVLVCVPLALF 278
>gi|319943384|ref|ZP_08017666.1| type II secretion system protein F domain protein [Lautropia
mirabilis ATCC 51599]
gi|319743199|gb|EFV95604.1| type II secretion system protein F domain protein [Lautropia
mirabilis ATCC 51599]
Length = 291
Score = 86.5 bits (213), Expect = 5e-15, Method: Composition-based stats.
Identities = 39/166 (23%), Positives = 73/166 (43%), Gaps = 7/166 (4%)
Query: 141 LLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISI 200
LL L V ++ +G PS+ I +L +R+ R PDA+ L+ V +G S+
Sbjct: 82 LLTGSLFLVVAVIVALGA----LPSLLIRHLGAQRRKLFARQLPDAMMLIAGAVRAGASM 137
Query: 201 DQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQ 260
ALR++A ++ P +E L + EL A N R D +R A+
Sbjct: 138 TLALRQMASEL---PAPGGQEFELMLRELRLGVTLDDALLNLERRMGCDDLRLFGAAVRI 194
Query: 261 SDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFF 306
++ G ++ ++L L R + +E + A + ++ +++
Sbjct: 195 ANESGGNLAETLERLADTIRKKMALEDKIMALTAQGRMQGWVMVLL 240
>gi|323491539|ref|ZP_08096718.1| Flp pilus assembly protein TadB [Vibrio brasiliensis LMG 20546]
gi|323314115|gb|EGA67200.1| Flp pilus assembly protein TadB [Vibrio brasiliensis LMG 20546]
Length = 322
Score = 86.5 bits (213), Expect = 5e-15, Method: Composition-based stats.
Identities = 47/300 (15%), Positives = 123/300 (41%), Gaps = 27/300 (9%)
Query: 15 AVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRT 74
+ ++ + A+++P+ GS K + R ++ S + A S L+
Sbjct: 7 LFFVLLFFAVVFISQALILPAAGSKAKHKELSE--------RLKESQSKLDEEARSLLQE 58
Query: 75 RDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIW 134
KSL + ++L I ++ + +G+ ++SL L++ + + ++
Sbjct: 59 HYLKSLTPWDRRL--VKIEALSSLKKMIELSGY--DWSLTQTLMITSFASVCGFFIALL- 113
Query: 135 IFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICV 194
+ P + + A++ + + W+ + R ++ + P+ALD++ +
Sbjct: 114 -------IGQPIYVGIAAIVAVWVCLYF----WLGKKISDRLAAFEEQLPEALDIMRRML 162
Query: 195 ESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNA 254
++G + QA V ++ P+ E T L++ + ++A RT +
Sbjct: 163 QAGQPVTQAFNEVGVEM---PAPIGIEFKNTFNLLNYGYDMRMAIMQMAERTPTVSMLAF 219
Query: 255 TQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVI 314
+ A++ G ++ ++L + R+ ++ + K S +L+ +++ VL + +
Sbjct: 220 SSAVLLQKETGGNLSENLEKVSRVLRARFKLQRKIKTLSAESRLSAWILVLSPFVLFIFL 279
>gi|238922470|ref|YP_002935983.1| hypothetical protein EUBREC_0044 [Eubacterium rectale ATCC 33656]
gi|238874142|gb|ACR73849.1| Hypothetical protein EUBREC_0044 [Eubacterium rectale ATCC 33656]
Length = 408
Score = 86.5 bits (213), Expect = 5e-15, Method: Composition-based stats.
Identities = 29/135 (21%), Positives = 61/135 (45%), Gaps = 8/135 (5%)
Query: 173 QKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSV-------PLSEEMLLT 225
++R ++ +P+ + + + + SG++++QA R+ + P EEML+T
Sbjct: 250 KERNIQLQLEYPEIVSKMAVLMGSGMTVEQAWNRITARYLDERKNNDKNIMPAYEEMLVT 309
Query: 226 IAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGT-SIGDSLRVLVSETRSERL 284
E+S + A+ F R ++ C + + ++QS G+ + + L + ER
Sbjct: 310 EREISDGVTGRKAYAGFAERVKLPCYQKLVRIILQSIHKGSKGVCEMLEKESEDAFDERR 369
Query: 285 MEAEKKAASLGPKLT 299
+ A K G K+
Sbjct: 370 LLALKLGEEAGTKML 384
>gi|295094185|emb|CBK83276.1| Bacterial type II secretion system protein F domain. [Coprococcus
sp. ART55/1]
Length = 443
Score = 86.5 bits (213), Expect = 5e-15, Method: Composition-based stats.
Identities = 35/173 (20%), Positives = 71/173 (41%), Gaps = 18/173 (10%)
Query: 145 PFQLRVGAVILIGYVGFCAPSVW------ISNLVQKRQSSIKRAWPDALDLLLICVESGI 198
P ++++ GF A +W I + +KR + +P+ +D L + + +G+
Sbjct: 253 PTSGGGSGLMILFLGGFAAICIWGGNRSKIQGMEKKRSDELMSEYPELVDKLTLYLGAGV 312
Query: 199 SIDQALRRVAEDIGGQSV-------PLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCV 251
++ A R+ + L+ E++ T+ E+ + A+ N +R +
Sbjct: 313 TVRGAFARIVKSGREDCAGTDQGGSVLTRELIYTLNEIQAGVSESEAYYNMGHRINLPMY 372
Query: 252 RNATQALIQSDRYGTSIGDSLRVLVSETR---SERLMEAEKKAASLGPKLTVP 301
L Q+ + GT D L ++ E + R A++K G KL +P
Sbjct: 373 IKLMSLLSQNVKKGTR--DILIMMAGEEQNAMQTRKEMAKRKGEEAGTKLLLP 423
>gi|147677787|ref|YP_001212002.1| flp pilus assembly protein TadC [Pelotomaculum thermopropionicum
SI]
gi|146273884|dbj|BAF59633.1| flp pilus assembly protein TadC [Pelotomaculum thermopropionicum
SI]
Length = 323
Score = 86.5 bits (213), Expect = 6e-15, Method: Composition-based stats.
Identities = 38/196 (19%), Positives = 80/196 (40%), Gaps = 12/196 (6%)
Query: 121 LVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIK 180
L + +I I G ++IF A + +G P + KR
Sbjct: 98 LGLVMILSIGGGLFIFAVTG--------SPVAGSIAAVLGVYLPCFILRLAKTKRLVKFN 149
Query: 181 RAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFE 240
DAL ++ + SG S QA+ V +++ G P+++E + E+++ + A
Sbjct: 150 GQIGDALIIMANSLRSGFSFLQAMDMVRKEMPG---PIAKEFGAALQEMNWGTPTEEALL 206
Query: 241 NFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV 300
N +R + + A++ + G ++ + L + R ++ E K + +++
Sbjct: 207 NMVSRVNSEDLELVVTAVLIQRQVGGNLAEVLDKIAFTIRERVRIKREIKTLTAQGRISG 266
Query: 301 PMIIFFLPVLILVIIG 316
+II LP+ + + I
Sbjct: 267 -LIIGLLPIFLSIAIF 281
>gi|149175457|ref|ZP_01854078.1| putative tight adherence tadb-related transmembrane protein
[Planctomyces maris DSM 8797]
gi|148845725|gb|EDL60067.1| putative tight adherence tadb-related transmembrane protein
[Planctomyces maris DSM 8797]
Length = 285
Score = 86.5 bits (213), Expect = 6e-15, Method: Composition-based stats.
Identities = 39/178 (21%), Positives = 66/178 (37%), Gaps = 4/178 (2%)
Query: 124 PIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAW 183
P + L L ++ L+ + Q + + VG AP ++ +RQ+ I
Sbjct: 54 PGVILFLCLMTATLAGGLI-FILQENFLSTSIAFMVGGMAPIGYLIFSRSRRQNKINDQL 112
Query: 184 PDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFY 243
D +D L ++G S+ VAE PL +E+ L + + A + Y
Sbjct: 113 SDMIDELARAAKTGRSLTHCFINVAEK---TPAPLGDELKEASRRLQMGVSMKAALDGLY 169
Query: 244 NRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVP 301
RT + + + ALI G + L L R L + A+ G + T
Sbjct: 170 ERTGVASLNILSMALIVHQETGGDLVKVLERLARTIRDRVLFLGRLRTATAGSRATAV 227
>gi|116671472|ref|YP_832405.1| type II secretion system protein [Arthrobacter sp. FB24]
gi|116611581|gb|ABK04305.1| type II secretion system protein [Arthrobacter sp. FB24]
Length = 316
Score = 86.5 bits (213), Expect = 6e-15, Method: Composition-based stats.
Identities = 47/228 (20%), Positives = 94/228 (41%), Gaps = 19/228 (8%)
Query: 102 LRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGF 161
L AG + + +V+ ++ +G+I Q V AV+ G
Sbjct: 79 LDQAGL--KIARTDFIVLVGATAVVAGFVGLI------------LQGPVFAVLFAGLTPI 124
Query: 162 CAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEE 221
A ++++S L Q+R++ + D L ++ + +G S+ +A+ VA++ S P + E
Sbjct: 125 LA-AMYLSFLTQRRRARFEAQLGDTLTMVSGGLRAGHSVLRAIDAVAQE---ASEPTATE 180
Query: 222 MLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRS 281
+ E + Q + + R + + QA+ + G + + + R
Sbjct: 181 FSRVVNETRLGRDLQDSLNDVSLRMKSEDFNWMAQAIEINREVGGDLAEVFDQVGETIRE 240
Query: 282 ERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMKDH 329
++ KA S KL+ +I+ LPVL+ ++IG A + H
Sbjct: 241 RSQIKGMVKALSAEGKLSA-IILMALPVLLFILIGLANPKYSGQLTGH 287
>gi|330811032|ref|YP_004355494.1| type II secretion system protein; membrane protein [Pseudomonas
brassicacearum subsp. brassicacearum NFM421]
gi|327379140|gb|AEA70490.1| putative type II secretion system protein; putative membrane
protein [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
Length = 328
Score = 86.5 bits (213), Expect = 6e-15, Method: Composition-based stats.
Identities = 52/317 (16%), Positives = 118/317 (37%), Gaps = 37/317 (11%)
Query: 14 LAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLR 73
L +++F L VV+P G E +RK+ L ++ L
Sbjct: 10 LIFLGMVFIAVFLLSQGVVVPVFG-------------EAGKMRKRIRGRLHVLEKANHLP 56
Query: 74 TRDSKSLRNFVKKLNLKAILVDE-----NIVNKLRAAGFRSEYSLNILLVVRLVVPIIFL 128
+ + ++ +L+ +++ N+ + AG +LL + I+
Sbjct: 57 NMQTVLRQKYLTRLSPLEARLEQLPFMANLTQLIEQAGHEYRAYRVMLLGL-----ILGG 111
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
G + + P + I KR ++ + PDALD
Sbjct: 112 AAGALVLMLSQVWWLALLAAFALTW---------LPVLKILRDRNKRFAAFEEGLPDALD 162
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
+ + +G ++ LR VAE+ G P+++E +T +++++ + + A R
Sbjct: 163 AMCRALRAGHPFNETLRLVAEEHKG---PVAQEFGMTFSDINYGNDVRRAMLGLLERMPS 219
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLT--VPMIIFF 306
V +++ G ++ + L L R + + + S +++ V + I F
Sbjct: 220 MTVMMLVTSILIHRETGGNLTEVLERLSRLIRGRFRFQRKIRTLSAEGRMSAWVLVAIPF 279
Query: 307 LPVLILVIIGPAILSII 323
+ + +V+ P+ + ++
Sbjct: 280 VLAIAIVLTSPSYMPVL 296
>gi|114797844|ref|YP_759873.1| putative Flp pilus assembly protein TadB [Hyphomonas neptunium ATCC
15444]
gi|114738018|gb|ABI76143.1| putative Flp pilus assembly protein TadB [Hyphomonas neptunium ATCC
15444]
Length = 316
Score = 86.1 bits (212), Expect = 6e-15, Method: Composition-based stats.
Identities = 36/192 (18%), Positives = 76/192 (39%), Gaps = 4/192 (2%)
Query: 124 PIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAW 183
P + + + A+ + V AP + I +L R +
Sbjct: 86 PAKWAAMSLAGAAVAGVAAFIYLGGLFAAIPVFFVVLVAAPILVIRHLAGARAKKLAAQL 145
Query: 184 PDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFY 243
PDAL ++ +E+G + A+ VA ++ P+ E +T E+S+ + A +
Sbjct: 146 PDALQIVCRSLEAGHPVATAVSLVAREMPD---PIGTEFGMTADEVSYGMSLTNAVQRMA 202
Query: 244 NRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMI 303
R V + ++ G ++ + L+ + R + M + +AAS +++ MI
Sbjct: 203 ERAGDPDVELFAATVRLQEKTGGNLTELLKSNTNTIRERQTMRLKVRAASSEGRVSA-MI 261
Query: 304 IFFLPVLILVII 315
+ P +++ I
Sbjct: 262 LTSAPFIVMTAI 273
>gi|167566942|ref|ZP_02359858.1| Flp pilus assembly protein TadB [Burkholderia oklahomensis EO147]
gi|167574011|ref|ZP_02366885.1| Flp pilus assembly protein TadB [Burkholderia oklahomensis C6786]
Length = 325
Score = 86.1 bits (212), Expect = 6e-15, Method: Composition-based stats.
Identities = 55/320 (17%), Positives = 113/320 (35%), Gaps = 30/320 (9%)
Query: 9 FDATELAVAITTAVSIFSLIYAVVIPSLGS-GELEKRMKSVAVEREILRKQQITSLQKDS 67
D + V++ V G +R++ +R +
Sbjct: 1 MDPIFYGFIVLLFVAVVLAFEGVYQWWNARHGPAARRIE------GRIRAMSAGGQVQKE 54
Query: 68 ASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIF 127
S L+ R R F +L L + + ++ +G +S+ L + L P
Sbjct: 55 RLSILKERMLNDARPF-DRL-LMRVPRMRMLDLLIQQSGL--TWSVAKLACISLATPFAA 110
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
I L P L A + + P++++ +R ++R PDA
Sbjct: 111 FIA----------LSFAPLPLWTSAAVAVTTAC--LPTLFVRRCRMRRLRKLERQLPDAC 158
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQ 247
D++ + +G + A+ V + P+ E +T E+++ Q A N R
Sbjct: 159 DMIARALRAGHAFSSAISMVGGEFAE---PMGGEFRITFDEINYGVPLQEALLNLATRVP 215
Query: 248 MDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFL 307
+ +R A++ G ++ + L + R + + + S KL+ I+ L
Sbjct: 216 VSDLRYFVIAVLIQRETGGNLAELLDGIALLIRERFKLFDKVRVLSAEGKLSA-WILTLL 274
Query: 308 P---VLILVIIGPAILSIID 324
P +L I+ P ++++
Sbjct: 275 PFGTAALLAIMNPDFIAVLW 294
>gi|222479461|ref|YP_002565698.1| type II secretion system protein [Halorubrum lacusprofundi ATCC
49239]
gi|222452363|gb|ACM56628.1| type II secretion system protein [Halorubrum lacusprofundi ATCC
49239]
Length = 715
Score = 86.1 bits (212), Expect = 7e-15, Method: Composition-based stats.
Identities = 38/175 (21%), Positives = 75/175 (42%), Gaps = 7/175 (4%)
Query: 154 ILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGG 213
I+ V A + ++R I+ A PD LD L E+G S+ ++RRVA+
Sbjct: 460 IVAATVVVLASYAVVYEAHKRRVRRIESAVPDFLDRLASVNEAGTSVVGSVRRVAD---S 516
Query: 214 QSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLR 273
L++++ T ++ + + A R + A + + R +G LR
Sbjct: 517 NLEALTDDLQRTRRDIDWGADVGTALRRLERRVRSPMTSRAVALITNAMRASGDVGPVLR 576
Query: 274 VLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMKD 328
+ E+R+ + E++ LT ++I+ ++ L II +S I +++
Sbjct: 577 IAADESRATWSLRRERR----QVMLTYLIVIYISFLVFLGIIASLSVSFIPAIEE 627
Score = 62.2 bits (150), Expect = 1e-07, Method: Composition-based stats.
Identities = 48/317 (15%), Positives = 108/317 (34%), Gaps = 23/317 (7%)
Query: 15 AVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAV--------EREILRKQQITSLQKD 66
+A ++ F A+++P++ + + VA+ E R++Q ++
Sbjct: 1 MIAYLPLLAAFGCCLALLLPAVD-DGADLVVTRVALSLFGDYVGEDGPRRQRQRDLMRAA 59
Query: 67 SASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPII 126
+ RT +K+L L + V +++ AAG S ++ + + +
Sbjct: 60 HVAGTHRTYAAKTL------LYAGVLGVAGSVIGVYAAAGLLSVLDVSEAALRGTLPASL 113
Query: 127 FLILGIIWIFGYDKLLEYPFQLRVGAVILIG-YVGFCAPSV-WISNLVQKRQSSIKRAWP 184
+ G+ + + A + VG + R + I P
Sbjct: 114 GFVAGVTRLTELGLPKLFLLLTLASATLGAALAVGMYYGRWELLDQRAHARGAEIDATLP 173
Query: 185 DALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSF-LPNRQVAFENFY 243
+ + SG+ + + +AE+ + E+ + + +++ + A +
Sbjct: 174 RTVAFMYALSRSGMPFPRVMDTLAEN-EAVYGEAATELSVAVRDMNAFGTDALTALQRTS 232
Query: 244 NRTQMDCVRNATQALIQSDRYGTSIGDSLRVL----VSETRSERLMEAEKKAASLGPKLT 299
RT D + + + L G I L E S++ E + +T
Sbjct: 233 RRTPSDDLADFAENLASVLGTGQPISTFLSDQYELYQEEAESKQQQYLELLSTFAEAYVT 292
Query: 300 VPMIIFFLPVLILVIIG 316
+ + ILV+IG
Sbjct: 293 ALVAGPLFFITILVVIG 309
>gi|225872757|ref|YP_002754214.1| bacterial type II secretion system protein F domain protein
[Acidobacterium capsulatum ATCC 51196]
gi|225792618|gb|ACO32708.1| bacterial type II secretion system protein F domain protein
[Acidobacterium capsulatum ATCC 51196]
Length = 323
Score = 86.1 bits (212), Expect = 7e-15, Method: Composition-based stats.
Identities = 49/284 (17%), Positives = 94/284 (33%), Gaps = 38/284 (13%)
Query: 25 FSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSL----QKDSASSRLRTRDSKSL 80
F++I + PS ++ +R+ ++ + + T Q A S R
Sbjct: 15 FAMIAVLSRPSKQEKKVYQRLDALTSRGSVQENKAGTPETLLKQPLGAGSVARVDAFLDR 74
Query: 81 RNFVKKLNLKAILVDENI---VNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFG 137
+F +L + N L+ GF + + RL+ P
Sbjct: 75 FDFYPRLEKIILQAHRNTTPGRVLLQTGGF----CIGGFIAARLLYP------------- 117
Query: 138 YDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESG 197
++ I +G P V ++ +R A PD++DLL + +G
Sbjct: 118 -----------QLIVEIGAPVIGLVFPFVALNFQRAQRLKKFNAALPDSIDLLGRALRAG 166
Query: 198 ISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQA 257
S+ A+ V+E P++ E +F + A R +R A
Sbjct: 167 HSVASAIEVVSEQGQE---PVASEFGEVFRAQNFGLPFRDAMLQLAERVPSSDLRFLVTA 223
Query: 258 LIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVP 301
++ G ++ + L R ++ E K + +LT
Sbjct: 224 MMVQKETGGNLTEILDRTTYVIRERLRIQGEVKTKTAQGRLTGV 267
>gi|323341959|ref|ZP_08082192.1| flp pilus assembly protein [Erysipelothrix rhusiopathiae ATCC
19414]
gi|322464384|gb|EFY09577.1| flp pilus assembly protein [Erysipelothrix rhusiopathiae ATCC
19414]
Length = 311
Score = 85.7 bits (211), Expect = 8e-15, Method: Composition-based stats.
Identities = 40/225 (17%), Positives = 86/225 (38%), Gaps = 18/225 (8%)
Query: 91 AILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRV 150
+I V E + L AG + + + L + + + + +
Sbjct: 62 SIEVPEKLKENLLMAGINLRPDEFLKMWLGLAAFAVVICVAL--------------DKGM 107
Query: 151 GAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAED 210
+ P ++I ++R + DAL +L + +G + +QAL +A+D
Sbjct: 108 IVTLFAFAAALIGPPMYIKIKRKQRIGKFSQQLGDALLILSNSLRAGFTFEQALASIAKD 167
Query: 211 IGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGD 270
+ P+ E L E+ N + + R + + ++ A+ + G ++ D
Sbjct: 168 LPD---PIGPEFLKVCREVELGENIEKSLAAVSTRMESEEMKLMNTAVSIQRQVGGNLAD 224
Query: 271 SLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVII 315
L + R ++ KA + ++ +I LPV++LV+I
Sbjct: 225 VLDNIGEAIRERITIQKNIKALTAQGDVSAKVIAG-LPVVVLVLI 268
>gi|257388762|ref|YP_003178535.1| type II secretion system protein [Halomicrobium mukohataei DSM
12286]
gi|257171069|gb|ACV48828.1| type II secretion system protein [Halomicrobium mukohataei DSM
12286]
Length = 807
Score = 85.7 bits (211), Expect = 9e-15, Method: Composition-based stats.
Identities = 45/209 (21%), Positives = 89/209 (42%), Gaps = 8/209 (3%)
Query: 109 SEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWI 168
S + R++ + + + + + LRV +LI + F + I
Sbjct: 404 SPVQTFLWNPSRVLYVTVPIAVLAVALRAPAAFETGTVNLRVLDDVLIQSLLFVLATFAI 463
Query: 169 SN-LVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIA 227
+ L +R I+ + P+ L+ L E+G+++ ++L RV G LSEE+ A
Sbjct: 464 ARELYTRRIRRIEASTPELLERLASLNEAGMTVVESLERVR---GTDVGALSEEVDRIWA 520
Query: 228 ELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEA 287
+++ N + A F R + + LI + R +G LR+ + RS+ +
Sbjct: 521 DVTMGANVEDALTRFGRRIRTTSMSRVVTLLINAMRSSGKMGPILRIAADQARSDYRLRR 580
Query: 288 EKKAASLGPKLTVPMIIFFLPVLILVIIG 316
+++ LT ++I+ ++ LVII
Sbjct: 581 QRRQE----MLTYLVVIYISFLVFLVIIA 605
Score = 58.4 bits (140), Expect = 1e-06, Method: Composition-based stats.
Identities = 39/206 (18%), Positives = 73/206 (35%), Gaps = 9/206 (4%)
Query: 126 IFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPD 185
I G + ++L V + + + + RQ +I
Sbjct: 115 ALGIRGFELVLTPREILWILIGGGVITGVTAAGLTYWLRWEMPRSRAAVRQRAIDEGQGR 174
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELS-FLPNRQVAFENFYN 244
L L G+S ALR ++++ +EE+ + + ++ F + A
Sbjct: 175 TLAFLYALSRGGVSFPAALRTLSDN-REIYGASAEEVSVAVRQMDLFGQDMITAVRGMAG 233
Query: 245 RTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRS--ERLME--AEKKAASLGPKLTV 300
RT + + + L + G S+ LR T+ ER E E A +TV
Sbjct: 234 RTPSEDFQTFAENLASVLQSGRSLSTFLREQYERTKDESERRQEEILEHLATVAEAYVTV 293
Query: 301 PMIIFFLPVLILVIIGPAILSIIDTM 326
+ + IL++ G L++ DT+
Sbjct: 294 LVAAVLFFITILLVFG---LTLADTL 316
>gi|260587079|ref|ZP_05852992.1| putative bacterial type II secretion system protein F domain
protein [Blautia hansenii DSM 20583]
gi|260542569|gb|EEX23138.1| putative bacterial type II secretion system protein F domain
protein [Blautia hansenii DSM 20583]
Length = 402
Score = 85.7 bits (211), Expect = 9e-15, Method: Composition-based stats.
Identities = 34/156 (21%), Positives = 74/156 (47%), Gaps = 9/156 (5%)
Query: 176 QSSIKRAWPDALDLLLICVESGISIDQALRRVA-------EDIGGQSVPLSEEMLLTIAE 228
+ ++R +PD + L++ + +G +I +A+ ++A E + EE++ T E
Sbjct: 248 RKEMQRDYPDIVQKLVLFLRAGFTIRKAMEKIADGYLRSREKYHAKERSAYEEIVRTCKE 307
Query: 229 LSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGT-SIGDSLRVLVSETRSERLMEA 287
+ A+E F R + + + L+Q+ + G ++ + L + ER A
Sbjct: 308 MQGGIYEAEAYERFGTRCGISQYKILSVLLVQNLKKGNQNLLELLEREEAVAEDERKRSA 367
Query: 288 EKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSII 323
+ + KL +PM++ + VL++++I PA S +
Sbjct: 368 KVRGEEASTKLLLPMVLQLIVVLMILMI-PAFFSFL 402
>gi|319782177|ref|YP_004141653.1| type II secretion system F domain [Mesorhizobium ciceri biovar
biserrulae WSM1271]
gi|317168065|gb|ADV11603.1| Type II secretion system F domain [Mesorhizobium ciceri biovar
biserrulae WSM1271]
Length = 322
Score = 85.7 bits (211), Expect = 1e-14, Method: Composition-based stats.
Identities = 35/192 (18%), Positives = 81/192 (42%), Gaps = 4/192 (2%)
Query: 124 PIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAW 183
P+ F ++ LL + + ++++ +G P + + KR +
Sbjct: 92 PLTFAATFLLAGLAMALLLVFFNFSALASLLIFLVIGLVLPLLVLRRARNKRIRKFAKQL 151
Query: 184 PDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFY 243
PDALD+++ + +G A+ VA ++ PL E + E++F + + A
Sbjct: 152 PDALDMIVRSLRAGHPASVAIGLVAREMPD---PLGTEFGIVSDEITFGLSIEQAVRKLS 208
Query: 244 NRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMI 303
R + ++ + +L + G ++ + L L S R + + + +A S +++ I
Sbjct: 209 QRVGFEGLQLLSVSLSIQSKTGGNLTEILANLSSVMRERQKLRMKIRALSAEGRVSA-WI 267
Query: 304 IFFLPVLILVII 315
I P+++ +
Sbjct: 268 ISLFPIVMFFTL 279
>gi|83749634|ref|ZP_00946617.1| TRANSMEMBRANE TIGHT ADHERENCE TADB-RELATED PROTEIN; tadB1
[Ralstonia solanacearum UW551]
gi|207744162|ref|YP_002260554.1| pilus assembly protein tadb [Ralstonia solanacearum IPO1609]
gi|83723695|gb|EAP70890.1| TRANSMEMBRANE TIGHT ADHERENCE TADB-RELATED PROTEIN; tadB1
[Ralstonia solanacearum UW551]
gi|206595566|emb|CAQ62493.1| pilus assembly protein tadb [Ralstonia solanacearum IPO1609]
Length = 325
Score = 85.7 bits (211), Expect = 1e-14, Method: Composition-based stats.
Identities = 47/319 (14%), Positives = 118/319 (36%), Gaps = 27/319 (8%)
Query: 9 FDATELAVAITTAVSIFSLIYAVVIPSLGS-GELEKRMKSVAVEREILRKQQITSLQKDS 67
D + ++ V+I + + + + KR+ L+ ++S +
Sbjct: 1 MDTLAIGFVLSVFVAIALGVSGLYLWWDSRHSQTAKRLSQ------RLKMALLSSARHGG 54
Query: 68 ASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIF 127
S L+ R + L + +++ L +G +S L + L +P++
Sbjct: 55 DESILKQRVLAESQEVAAMLGQLPRIHQLDLI--LLQSGL--NWSAGRFLALTLGLPVVV 110
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
++ P A + + PS ++ +R ++ P+A
Sbjct: 111 IVG------------VSPLAPPWMATLALAVAAGSLPSFYVMYRRTRRLLRLETQLPEAT 158
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQ 247
DL+ + +G S+ AL +++ P+ E+ + ++++ + A +R
Sbjct: 159 DLISRALRAGHSLPSALEMAGDEL---PQPIGPELAIVFGQINYGVSMNDALAGLIDRVP 215
Query: 248 MDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFL 307
+D +R A++ G ++ + L + + R + + + S +L I+ L
Sbjct: 216 VDDLRYLVIAILIQRESGGNLAEILDNVGTLIRKRLQLLDKVRVLSAEGRL-GGWILTAL 274
Query: 308 PVLILVIIGPAILSIIDTM 326
P + V++ ++ T+
Sbjct: 275 PPAMAVVVYQLNPELMSTL 293
>gi|116623252|ref|YP_825408.1| type II secretion system protein [Candidatus Solibacter usitatus
Ellin6076]
gi|116226414|gb|ABJ85123.1| type II secretion system protein [Candidatus Solibacter usitatus
Ellin6076]
Length = 321
Score = 85.3 bits (210), Expect = 1e-14, Method: Composition-based stats.
Identities = 42/284 (14%), Positives = 99/284 (34%), Gaps = 21/284 (7%)
Query: 16 VAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTR 75
+ + V+ +++ + +G LE+R ++AV R L + RL
Sbjct: 1 MPVLFLVAAATVVLTYRLLWMG---LERRDAALAVRR--LSARPAGREDAGRGRPRLIEG 55
Query: 76 DSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWI 135
++ +L L+ + + + + L A ++ LL + + + + +
Sbjct: 56 AGEARGVLTSRL-LEGLRLRDAAAHLLETAAL--KWGPAGLLQRSVAMFLGGFVAATVAT 112
Query: 136 FGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVE 195
L +G C P ++ + R ++ + +PD L+ + +
Sbjct: 113 ANQAPLAALAAGAVLG----------CGPLWYVRRKARMRVAAFEDQFPDCLEFVSRSMR 162
Query: 196 SGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNAT 255
+G + A+ + PL+ E+ E + ++ R V+
Sbjct: 163 AGHAFSVAIEMAHREFSD---PLAGELRRAFEEQNLGQPLEIVLRKLSQRVPSMDVQFFV 219
Query: 256 QALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLT 299
A++ R G ++ + L L R + A +A S ++
Sbjct: 220 SAVLLQKRTGGNLAELLDKLAQLMRERFKLRARIRAVSAQGLMS 263
>gi|290957845|ref|YP_003489027.1| type II secretion system F protein [Streptomyces scabiei 87.22]
gi|260647371|emb|CBG70476.1| putative type II secretion system F protein [Streptomyces scabiei
87.22]
Length = 341
Score = 85.3 bits (210), Expect = 1e-14, Method: Composition-based stats.
Identities = 33/177 (18%), Positives = 67/177 (37%), Gaps = 8/177 (4%)
Query: 127 FLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDA 186
+++L ++ ++ PF + G +G A +++++ QKR + PD
Sbjct: 119 YVVLAVVALWLIAAATLAPFFGPI-----AGAIGVWAAAIFLNWQRQKRIEAFINQLPDV 173
Query: 187 LDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRT 246
LL +G+++ AL AE++ P EE+ +L+ + A R
Sbjct: 174 ARLLANATAAGLALRTALAMAAEELEA---PAGEELARVADQLALGRSVDDALGELAERL 230
Query: 247 QMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMI 303
+ L+ S++ G ++ SLR L + E + T +
Sbjct: 231 PSRELIVLVTTLVLSNKAGGTVVSSLRNLTQTLEDRKETRREVRTMLSEVNATAFTV 287
>gi|295107881|emb|CBL21834.1| Bacterial type II secretion system protein F domain. [Ruminococcus
obeum A2-162]
Length = 341
Score = 85.3 bits (210), Expect = 1e-14, Method: Composition-based stats.
Identities = 37/180 (20%), Positives = 72/180 (40%), Gaps = 13/180 (7%)
Query: 155 LIGYVGFCAPSVWISNLVQ-------KRQSSIKRAWPDALDLLLICVESGISIDQALRRV 207
L+ + F A V + + KR + +P + + +++G++ + +++
Sbjct: 161 LLASLAFFAAFVVMLKKAKEQQEEMAKRAEQLLMDYPSLIMKFTLLIQAGMTARKVFQKM 220
Query: 208 AEDI----GGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDR 263
+ D E + + E+ A+ F R + + LIQ+ +
Sbjct: 221 SADYMRNRSKTGRYAYEAITIMCHEMDSGVAEMEAYRRFGERCGQMKYKTFSTILIQNLQ 280
Query: 264 YGT-SIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
G+ + D L E ER +A + KL VPMI+ L V++ +I+ PA LS
Sbjct: 281 KGSHRMADLLEKEALEAWDERKRKARVLGETAATKLLVPMIM-MLAVVMAIIMIPAFLSF 339
>gi|163751751|ref|ZP_02158969.1| hypothetical Flp pilus assembly protein TadB [Shewanella benthica
KT99]
gi|161328403|gb|EDP99562.1| hypothetical Flp pilus assembly protein TadB [Shewanella benthica
KT99]
Length = 325
Score = 85.3 bits (210), Expect = 1e-14, Method: Composition-based stats.
Identities = 52/306 (16%), Positives = 118/306 (38%), Gaps = 24/306 (7%)
Query: 9 FDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSA 68
+ EL +++ L A+ +P A+ R+ L++ +
Sbjct: 1 MFSNELIFFGLIFLAVILLSQALFLPVYSPQRANT-----ALIRKRLKQLSAHAGDTSFE 55
Query: 69 SSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFL 128
S LR + L N + L+ I EN+ +L A ++ + L + +
Sbjct: 56 VSLLRKSKLEKLTNLGR--MLERIEFIENLSYRLELADYKMMGHQFLFLGI-----FTSM 108
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
I+ ++ + ++ F + + + ++ ++ KR +I+ ++PD LD
Sbjct: 109 IMAMLAWYYINEPFMTAFIFVITSFLF---------NMKLNRDTNKRMDTIEASFPDGLD 159
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
++ +++G S A++ E++ G PL++E L +++ + ++A F R
Sbjct: 160 VIRRALQAGYSFTDAIKLATEELEG---PLAKEFKLMFVNINYTKDIKLALLGFIQRVPS 216
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP 308
A++ G ++ +++ L R K S +L+ ++I
Sbjct: 217 VSALAFASAVMVQRETGGNLAENIENLTRVIRQRFKFRRRVKTLSAEGRLSAWILILLPF 276
Query: 309 VLILVI 314
L VI
Sbjct: 277 ALFAVI 282
>gi|296122168|ref|YP_003629946.1| type II secretion system protein [Planctomyces limnophilus DSM
3776]
gi|296014508|gb|ADG67747.1| type II secretion system protein [Planctomyces limnophilus DSM
3776]
Length = 321
Score = 84.9 bits (209), Expect = 2e-14, Method: Composition-based stats.
Identities = 51/318 (16%), Positives = 114/318 (35%), Gaps = 32/318 (10%)
Query: 12 TELAVAITTAVSIFSLIYAVVIPSLGSG--ELEKRMKSVAVEREILRKQQITSLQKDSAS 69
+ L +++T V + + + A+ +G E R+ +A + + +IT + S
Sbjct: 2 SPLMISLTVFVGVSAFVGAIASLLMGGNSKRAEDRLDVLAGLKTSEEQTKITKDELVKLS 61
Query: 70 SRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLI 129
S+ L + + L D I G RS L++ + I+
Sbjct: 62 SQTIDGALGLLMERFRGIGLFFEQADSPI-------GLRS------FLLISVSCGIVGAA 108
Query: 130 LGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDL 189
LG+I + L G + P +W+S +KR + PDA++L
Sbjct: 109 LGLI------------GNAPTPLLPLFGLLTSTFPFIWLSFRRKKRFKQFAKQLPDAMEL 156
Query: 190 LLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMD 249
+ + SG S+ L V +++ P+S+ + + A + +
Sbjct: 157 MGRALRSGHSLASGLHLVCDEM---PPPISQVFRSAYETQNLGVPVESALKESLKKMPNL 213
Query: 250 CVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPV 309
+ A+ + G + + L + R + +A + +L+ +++
Sbjct: 214 DYKFFVTAVAIQRQTGGDLAEILDKISEVIRERFKILGTVQALTGEGRLSGAVLMAMPIA 273
Query: 310 LI--LVIIGPAILSIIDT 325
+ + + P + ++ T
Sbjct: 274 IFFAVYYLNPNYVMVLFT 291
>gi|127511577|ref|YP_001092774.1| type II secretion system protein [Shewanella loihica PV-4]
gi|126636872|gb|ABO22515.1| type II secretion system protein [Shewanella loihica PV-4]
Length = 283
Score = 84.9 bits (209), Expect = 2e-14, Method: Composition-based stats.
Identities = 40/202 (19%), Positives = 88/202 (43%), Gaps = 5/202 (2%)
Query: 114 NILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQ 173
N+ + + P ++ ++ + L+ F V ++L + P L +
Sbjct: 44 NLFDMFLFIEPRQLFVINMLTLLAVPFLVRLFFGSWVLGILLSIAL-ALLPRFAYQFLHK 102
Query: 174 KRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLP 233
+R+ PDAL+++ ++SG ++ A+ +AE++ P+ +E L + E
Sbjct: 103 RRRRKFVHQLPDALNMIASSMQSGANVSNAIEFMAEEMEA---PIKQEFQLFLREQRLGV 159
Query: 234 NRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAAS 293
A +N + R + + T + S G ++ + L+ L + R + ME + A +
Sbjct: 160 EFNTALDNMFKRIPEEEFQLVTAGMQISREVGGNLAEVLQRLSATLRKKIEMEGKIDALT 219
Query: 294 LGPKLTVPMIIFFLPVLILVII 315
K+ +++ LPV I V++
Sbjct: 220 SQGKMQG-IVMTLLPVFIGVVL 240
>gi|222834143|gb|EEE72620.1| predicted protein [Populus trichocarpa]
Length = 194
Score = 84.9 bits (209), Expect = 2e-14, Method: Composition-based stats.
Identities = 30/154 (19%), Positives = 62/154 (40%), Gaps = 7/154 (4%)
Query: 125 IIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWP 184
+ L ++ L+ P + +G + + + P + + L KR ++ P
Sbjct: 31 FGYCGLVVLCAVALIPLVPVPLPIILGCMAFV----WLLPFLHVMRLRTKRLKQMEVQLP 86
Query: 185 DALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYN 244
DA+D++ + +G S AL V ++I PL E T E+++ A N
Sbjct: 87 DAVDMISRALRAGHSFAGALGMVGQEIKA---PLGPEFRTTFEEINYGVALDEAMTNLAM 143
Query: 245 RTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSE 278
R + +R A++ G ++ + L + +
Sbjct: 144 RVPVGDLRYFVIAVLIQRESGGNLAEILDTIGTM 177
>gi|18977364|ref|NP_578721.1| hypothetical protein PF0992 [Pyrococcus furiosus DSM 3638]
gi|18893045|gb|AAL81116.1| hypothetical protein PF0992 [Pyrococcus furiosus DSM 3638]
Length = 309
Score = 84.9 bits (209), Expect = 2e-14, Method: Composition-based stats.
Identities = 43/203 (21%), Positives = 87/203 (42%), Gaps = 16/203 (7%)
Query: 125 IIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWP 184
+I L +GII L VG + G G+ P + + +R +++A P
Sbjct: 48 VISLFIGIILGIVIYIFSSSIPGLLVGILAGFGGFGYFYPYI----RITRRIEDMEKALP 103
Query: 185 DALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYN 244
DA L + +G+S +AL +A + L+ E T++E+ A F
Sbjct: 104 DAFFYLAGSLRAGVSFSEALEELAS---AKFGALTLEFRRTVSEIKRGRPTVEALRAFAL 160
Query: 245 RT-QMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMI 303
R + + +T +I++ G + D L + ++ R ++ E+KA++ + M+
Sbjct: 161 RNKRSPVIYRSTMIIIEALERGAPMADVLVAVANDVREIIRIQKERKAST-----GMQMM 215
Query: 304 IFFLPVLILVIIGPAILSIIDTM 326
F + + GP I++++ +
Sbjct: 216 FFLVSSGFV---GPFIVAVVSNI 235
>gi|148976657|ref|ZP_01813344.1| Flp pilus assembly protein TadB [Vibrionales bacterium SWAT-3]
gi|145964008|gb|EDK29266.1| Flp pilus assembly protein TadB [Vibrionales bacterium SWAT-3]
Length = 321
Score = 84.5 bits (208), Expect = 2e-14, Method: Composition-based stats.
Identities = 49/296 (16%), Positives = 113/296 (38%), Gaps = 28/296 (9%)
Query: 18 ITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDS 77
+ +++ + A+++P+ G K + R ++ + + S L+ +
Sbjct: 9 VLLFIAVLFISQALLLPAAG--------KKAKHKELTRRLKETQRNIDEESLSLLKEHYN 60
Query: 78 KSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFG 137
K L F +KL + L D + L AG + +L+ L V +
Sbjct: 61 KELSPFDRKLIVIPFLAD--LKRMLELAGL--KITLSRFLFVVFLCG------------T 104
Query: 138 YDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESG 197
L+ + + +++ N V R + + P+ALD++ +++G
Sbjct: 105 LLALVALVLNQVWFICVAAFVFAWVVAYLFVQNRVTYRMARFEEQLPEALDIIRRALQAG 164
Query: 198 ISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQA 257
I Q+ V E++ P+ E T L++ + ++A R + + A
Sbjct: 165 QPIVQSFNEVGEEM---PEPIGVEFKNTYNLLNYGYDLRLAIMQMTERVPTVSMLAFSSA 221
Query: 258 LIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILV 313
++ G ++ ++L+ + R+ +E + K S +L+ I+ P ++
Sbjct: 222 VMLQKETGGNLSENLQKVSEVLRARFKLERKIKTLSAESRLSA-WILTLSPFVLFF 276
>gi|258621454|ref|ZP_05716488.1| Flp pilus assembly protein TadB [Vibrio mimicus VM573]
gi|258586842|gb|EEW11557.1| Flp pilus assembly protein TadB [Vibrio mimicus VM573]
Length = 232
Score = 84.5 bits (208), Expect = 2e-14, Method: Composition-based stats.
Identities = 30/172 (17%), Positives = 69/172 (40%), Gaps = 3/172 (1%)
Query: 145 PFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQAL 204
F + G V + ++ + R S + PDALD++ +++G + QA
Sbjct: 23 TFGAGLVLSFSWGVVVWFVLQFFLQKRIADRLSRFEEQLPDALDIIRRMLQAGQPVTQAF 82
Query: 205 RRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRY 264
V +++ P+ E T L++ + ++A RT + A++
Sbjct: 83 NEVGKEMAA---PIGLEFKNTFNLLNYGYDMRLAIMQMAERTPTVSMLAFASAVMLQKET 139
Query: 265 GTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIG 316
G ++ ++L + R + + K S +L+ +++ VL + ++
Sbjct: 140 GGNLSENLEKVGKVLRQRFKLTRKIKTLSAESRLSAWILVLSPFVLFIGLMF 191
>gi|207728102|ref|YP_002256496.1| pilus assembly protein tadb [Ralstonia solanacearum MolK2]
gi|206591347|emb|CAQ56959.1| pilus assembly protein tadb [Ralstonia solanacearum MolK2]
Length = 325
Score = 84.5 bits (208), Expect = 2e-14, Method: Composition-based stats.
Identities = 48/319 (15%), Positives = 116/319 (36%), Gaps = 27/319 (8%)
Query: 9 FDATELAVAITTAVSIFSLIYAVVIPSLGS-GELEKRMKSVAVEREILRKQQITSLQKDS 67
D + ++ V+I + + + S + KR+ L+ ++S +
Sbjct: 1 MDTLVIGFVLSVFVAIALGVSGLYLWWDSSHSQTAKRLSQ------RLKMALLSSARHGG 54
Query: 68 ASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIF 127
S L+ R L + + L +G +S L + L +P++
Sbjct: 55 DESILKQRVLAESPEVAAMLG--RLPRIAQLDRILLQSGL--NWSAGRFLALSLGLPVVV 110
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
++ P A + + PS ++ +R ++ P+A
Sbjct: 111 IVG------------MSPLNPPWMATLALAVAAGSLPSFYVMYRRTRRLLRLEAQLPEAT 158
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQ 247
DL+ + +G S+ AL +++ P+ E+ + ++++ + A +R
Sbjct: 159 DLISRALRAGHSLPSALEMAGDEL---PQPIGPELAIVFGQINYGVSMNDALAGLIDRVP 215
Query: 248 MDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFL 307
+D +R A++ G ++ + L + + R + + + S +L I+ L
Sbjct: 216 VDDLRYLVIAILIQRESGGNLAEILDNVGTLIRKRLQLLDKVRVLSAEGRL-GGWILTAL 274
Query: 308 PVLILVIIGPAILSIIDTM 326
P + V++ ++ T+
Sbjct: 275 PPAMAVVVYQLNPELMSTL 293
>gi|29829794|ref|NP_824428.1| hypothetical protein SAV_3252 [Streptomyces avermitilis MA-4680]
gi|29606903|dbj|BAC70963.1| hypothetical protein [Streptomyces avermitilis MA-4680]
Length = 313
Score = 84.5 bits (208), Expect = 2e-14, Method: Composition-based stats.
Identities = 32/171 (18%), Positives = 59/171 (34%), Gaps = 3/171 (1%)
Query: 133 IWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLI 192
+ L L + VG +V+++ QKR + PD LL
Sbjct: 92 VAAVVVALWLIAATTLAPFFGPIAALVGIWGAAVFLNWQRQKRIEAFIGQLPDVARLLAN 151
Query: 193 CVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVR 252
+G+++ AL AE++ P EE+ +L+ + A + R +
Sbjct: 152 ATAAGLALRTALAMAAEELEA---PAGEELARVADQLTLGRSVDDALDELAERLPSRELI 208
Query: 253 NATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMI 303
L+ +++ G S+ SLR L + E + T +
Sbjct: 209 VLVTTLVLANKAGGSVVSSLRNLTQTLEDRKETRREVRTMLSEVNATAFTV 259
>gi|87308907|ref|ZP_01091045.1| putative membrane protein [Blastopirellula marina DSM 3645]
gi|87288250|gb|EAQ80146.1| putative membrane protein [Blastopirellula marina DSM 3645]
Length = 310
Score = 84.5 bits (208), Expect = 2e-14, Method: Composition-based stats.
Identities = 33/178 (18%), Positives = 71/178 (39%), Gaps = 6/178 (3%)
Query: 126 IFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPD 185
+ L++ + G + L G V ++G +WI N R + + +P
Sbjct: 85 VALMIAVGATCGVAAFVITEDPLVTGLVTVLGIFACLGVLIWIKNR---RLRAFQDQFPS 141
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
AL+L+ V +G S +QA++ V E P+ E +L + A E +R
Sbjct: 142 ALELIARAVRAGESFEQAIQLVGESSED---PIGVEFRRCAKQLDVGLSAPKAMEGMADR 198
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMI 303
++ V+ + G ++ ++L L + R + ++ + +++ +I
Sbjct: 199 VELMDVKIFATTISVHRESGGALPETLDRLAAVIRDRMAYHRQLRSITSSGRMSATII 256
>gi|160935909|ref|ZP_02083283.1| hypothetical protein CLOBOL_00802 [Clostridium bolteae ATCC
BAA-613]
gi|158441151|gb|EDP18868.1| hypothetical protein CLOBOL_00802 [Clostridium bolteae ATCC
BAA-613]
Length = 426
Score = 84.5 bits (208), Expect = 2e-14, Method: Composition-based stats.
Identities = 39/190 (20%), Positives = 76/190 (40%), Gaps = 16/190 (8%)
Query: 138 YDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESG 197
Y E F +G + + F N ++R+ + +P+ L L I + +G
Sbjct: 234 YSLPEESVFVPVMGLGVAGAVLCFFGDQARQQNRTEERKRQLALDYPEVLSRLTIFLGAG 293
Query: 198 ISIDQALRRVAEDI-------GGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDC 250
+SI A ++A + + + EEM T ++ AFE F R +
Sbjct: 294 MSIRTAWDKIALEYKMMVEQGRRRKRYVYEEMYETSCQMKGGVPEGKAFEEFGRRCGLQS 353
Query: 251 VRNATQALIQSDRYGT-SIGDSLRVLVSETRSERLMEAEKKAASLGPK--------LTVP 301
L Q+ + G+ ++ + LR +++ +R +A + G K L+V
Sbjct: 354 YMKLGGLLEQNRKNGSKNLRNLLRTEMTDAFEQRKHQARRLGEEAGTKLLLPLFILLSVV 413
Query: 302 MIIFFLPVLI 311
M++ +P L+
Sbjct: 414 MVMIAVPALM 423
>gi|89100215|ref|ZP_01173082.1| putative integral membrane protein [Bacillus sp. NRRL B-14911]
gi|89085065|gb|EAR64199.1| putative integral membrane protein [Bacillus sp. NRRL B-14911]
Length = 308
Score = 84.5 bits (208), Expect = 2e-14, Method: Composition-based stats.
Identities = 47/272 (17%), Positives = 96/272 (35%), Gaps = 24/272 (8%)
Query: 56 RKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNI 115
RK++ +K + + S + + + + + KL A
Sbjct: 25 RKEKKEIQKKYEELFKTENQRSSFIAKVGDRFDQTDYAL--ELKKKLVQANIP------- 75
Query: 116 LLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQ-K 174
++P F + I F LL F + + I +G A +I + + K
Sbjct: 76 ------ILPSEFYAILIFIGFLMSILLFGFFNIPLIISAGISAIGMIAAYWFIFFIRKNK 129
Query: 175 RQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPN 234
+ +A LL +SG++I Q L VA +I + P EE + L +
Sbjct: 130 YTEQLNNQLSEACRLLGNATKSGMTITQGLEVVASEI---NSPAREEFKVLTQNLRLGLD 186
Query: 235 RQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASL 294
+ A R + + AL+ R G ++ L + +++ K A+
Sbjct: 187 FERALAEMEKRIKTREYKLFISALMIQKRSGGNLTKVLYEMAQTLEERKILRQTIKTATA 246
Query: 295 GPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
+ + + LP + + ++ + +I+D
Sbjct: 247 EQR----FVSYILPAMPIFLLF-MLNNIMDGF 273
>gi|329935279|ref|ZP_08285245.1| type II secretion system F protein [Streptomyces griseoaurantiacus
M045]
gi|329305102|gb|EGG48961.1| type II secretion system F protein [Streptomyces griseoaurantiacus
M045]
Length = 315
Score = 84.2 bits (207), Expect = 3e-14, Method: Composition-based stats.
Identities = 32/149 (21%), Positives = 54/149 (36%), Gaps = 3/149 (2%)
Query: 155 LIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQ 214
L VG + V+++ QKR + PD LL +G+++ AL AE++
Sbjct: 116 LAALVGLWSAVVFLNWQRQKRIEAFINQLPDVARLLANATAAGLALRTALAMAAEELEA- 174
Query: 215 SVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRV 274
P EE+ +L+ A R + L+ S++ G S+ SLR
Sbjct: 175 --PAGEELARVADQLNLGRTVDDALGELAERLPSRELIVLVTTLVLSNKAGGSVVSSLRN 232
Query: 275 LVSETRSERLMEAEKKAASLGPKLTVPMI 303
L + E + T +
Sbjct: 233 LTQTLEDRKETRREVRTMLSEVNATAFTV 261
>gi|331082850|ref|ZP_08331972.1| hypothetical protein HMPREF0992_00896 [Lachnospiraceae bacterium
6_1_63FAA]
gi|330400179|gb|EGG79828.1| hypothetical protein HMPREF0992_00896 [Lachnospiraceae bacterium
6_1_63FAA]
Length = 389
Score = 84.2 bits (207), Expect = 3e-14, Method: Composition-based stats.
Identities = 34/156 (21%), Positives = 74/156 (47%), Gaps = 9/156 (5%)
Query: 176 QSSIKRAWPDALDLLLICVESGISIDQALRRVA-------EDIGGQSVPLSEEMLLTIAE 228
+ ++R +PD + L++ + +G +I +A+ ++A E + EE++ T E
Sbjct: 235 RKEMQRDYPDIIQKLVLFLRAGFTIRKAMEKIADGYLRSREKYHEKERSAYEEIVRTCKE 294
Query: 229 LSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGT-SIGDSLRVLVSETRSERLMEA 287
+ A+E F R + + + L+Q+ + G ++ + L + ER A
Sbjct: 295 MQSGIYEAEAYERFGTRCGISQYKILSVLLVQNLKKGNQNLLELLEREEAVAEDERKRSA 354
Query: 288 EKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSII 323
+ + KL +PM++ + VL++++I PA S +
Sbjct: 355 KVRGEEASTKLLLPMVLQLIVVLMILMI-PAFFSFL 389
>gi|255020084|ref|ZP_05292155.1| type II secretion system protein [Acidithiobacillus caldus ATCC
51756]
gi|254970446|gb|EET27937.1| type II secretion system protein [Acidithiobacillus caldus ATCC
51756]
Length = 284
Score = 84.2 bits (207), Expect = 3e-14, Method: Composition-based stats.
Identities = 41/183 (22%), Positives = 80/183 (43%), Gaps = 4/183 (2%)
Query: 133 IWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLI 192
+ LL Y V V++ + AP + L ++R + PD L ++
Sbjct: 63 VAALFLVPLLVYLLVPSVPIVVVAALLVAIAPRYVLLYLKKRRFLRLHDQLPDTLLMMAS 122
Query: 193 CVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVR 252
+ G ++ Q L +A+D+ S P+++E+ L + E + A + R +
Sbjct: 123 ALRGGANLGQTLEGLAKDM---SPPMNQELSLVVREQRLGVPFEEAVSHLAERVRSQDFD 179
Query: 253 NATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLIL 312
AL + G ++ D+L+ L R +ME + +A + KL +++ LPVLI+
Sbjct: 180 LVVSALRINREVGGNLADTLQRLGETVRRRLMMEQKIRALTSQGKLQG-IVMTALPVLII 238
Query: 313 VII 315
+ +
Sbjct: 239 LAL 241
>gi|257053876|ref|YP_003131709.1| type II secretion system protein [Halorhabdus utahensis DSM 12940]
gi|256692639|gb|ACV12976.1| type II secretion system protein [Halorhabdus utahensis DSM 12940]
Length = 802
Score = 84.2 bits (207), Expect = 3e-14, Method: Composition-based stats.
Identities = 43/210 (20%), Positives = 87/210 (41%), Gaps = 5/210 (2%)
Query: 107 FRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSV 166
R I R+ + + L + + + Y F LR+ +L+ F +
Sbjct: 399 LRRPAQTIIWNPTRIFYLTVPIALVWVALRAPGTITGYGFNLRLADDLLVQTTLFLIGTF 458
Query: 167 -WISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLT 225
+ + +R I+ A P+ L+ L E+G+S ++L RV + L++E+
Sbjct: 459 AVVREIYSRRIDRIEAATPELLERLASLNEAGMSFVESLDRVRD---SDLGVLTDEVDRI 515
Query: 226 IAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLM 285
++S N A F R + + L+ + R +G LR+ S+ RS+ +
Sbjct: 516 WTDISMGANSPDALRRFGQRVRTASIARVVTLLMHAMRASGRLGPVLRIASSQARSDLEL 575
Query: 286 EAEKKAASLGPKLTVPMIIFFLPVLILVII 315
E++ + L V + FF+ ++I+ +
Sbjct: 576 RRERR-QQMFTYLVVIYVSFFVFLVIIFAV 604
Score = 38.3 bits (88), Expect = 1.6, Method: Composition-based stats.
Identities = 29/186 (15%), Positives = 59/186 (31%), Gaps = 8/186 (4%)
Query: 135 IFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICV 194
+ D++ V L V + A + + R+ I A P +
Sbjct: 122 VLPADQVFIVLTAGGVVLGALSAVVTYVARWQLPAGTAEVRRRGINEALPRTVAFTYALS 181
Query: 195 ESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELS-FLPNRQVAFENFYNRTQMDCVRN 253
G++ +R + + ++E+ + + E+ F + A +R+ D R
Sbjct: 182 RGGLAFPDVMRTLGRN-REIYGDAADEVSVAVREMDVFGTDMISAIRRTAHRSPSDTFRT 240
Query: 254 ATQALIQSDRYGTSIGDSLRVLVSETRSERL------MEAEKKAASLGPKLTVPMIIFFL 307
+ L G I L + E +E A V ++F L
Sbjct: 241 FGENLASVLASGQHIPAFLEDQYDRLQEEAEQRQEEVLELLATIAEAYVTTLVAGVLFLL 300
Query: 308 PVLILV 313
+L++
Sbjct: 301 TILLVF 306
>gi|156741692|ref|YP_001431821.1| type II secretion system protein [Roseiflexus castenholzii DSM
13941]
gi|156233020|gb|ABU57803.1| type II secretion system protein [Roseiflexus castenholzii DSM
13941]
Length = 318
Score = 84.2 bits (207), Expect = 3e-14, Method: Composition-based stats.
Identities = 47/307 (15%), Positives = 117/307 (38%), Gaps = 30/307 (9%)
Query: 9 FDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSA 68
+ + + A+ + IF L+ + ++++ +++ + + +
Sbjct: 1 MNPSGVEPAVLFGLCIFMLLVSGYHL----------VRALQAREQLIARAEDLGADPEVL 50
Query: 69 SSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFL 128
S LR + L + + + + +++ +LR A + + +R+ V I +
Sbjct: 51 SDPLRRQ--SFLVRWADRYDRSPQV--QHLREQLRRAAV--PWKPSDYYAIRVGVSFIVV 104
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
I+ + +L+ P GA ++ F P ++ + + +
Sbjct: 105 IICWM-------MLDLPV---FGAALVGAAAYFIVPRIFFFLRQNAYVRAFNKQLVEVTQ 154
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
LL + +G+SI QA+ V+E + P E T EL N +A + R
Sbjct: 155 LLANALRAGMSIQQAIGEVSERV---PEPARSEFRQTHHELLLGDNLPLALHDMRRRVCS 211
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP 308
+ A++ + G ++ L + + + +E E + + + + +++ LP
Sbjct: 212 RDLDVLINAIVVQHQAGGNLVRVLNGMANTLNERQRLEREIDSLTSEARFSA-LVVMVLP 270
Query: 309 VLILVII 315
+ L++I
Sbjct: 271 IFFLLMI 277
>gi|218710399|ref|YP_002418020.1| Flp pilus assembly protein TadB [Vibrio splendidus LGP32]
gi|218323418|emb|CAV19595.1| Flp pilus assembly protein TadB [Vibrio splendidus LGP32]
Length = 321
Score = 83.8 bits (206), Expect = 3e-14, Method: Composition-based stats.
Identities = 48/282 (17%), Positives = 114/282 (40%), Gaps = 27/282 (9%)
Query: 19 TTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSK 78
+++ + A+++P+ G K + R ++ + + S L+ +K
Sbjct: 10 LLFIAVLFISQALLLPAAG--------KKAKHKELSRRLKETQRNIDEESLSLLKEHYNK 61
Query: 79 SLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGY 138
L +KL + + L AG R SL+ L++ + + ++ I
Sbjct: 62 DLSPLDRKLIVIPYFA--GLKRMLELAGIR--VSLSRFLLIVALCGVSLTLISI------ 111
Query: 139 DKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGI 198
+ + + + + A I + V + ++ N V R + + P+ALD++ +++G
Sbjct: 112 --MTQQEWFISLTAFIAVWVVAYL----YVQNRVSYRMARFEEQLPEALDIIRRALQAGQ 165
Query: 199 SIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQAL 258
+ Q+ V E++ P+ E T L++ + ++A R + + A+
Sbjct: 166 PLIQSFNEVGEELPD---PIGAEFKNTYNLLNYGYDLRLAILQMAERVPTVSMLAFSSAV 222
Query: 259 IQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV 300
+ G ++ ++L+ + RS +E + K S +L+
Sbjct: 223 MLQKETGGNLSENLQKVSEVLRSRFKLERKIKTLSAESRLSA 264
>gi|197106492|ref|YP_002131869.1| Flp pilus assembly protein [Phenylobacterium zucineum HLK1]
gi|196479912|gb|ACG79440.1| Flp pilus assembly protein [Phenylobacterium zucineum HLK1]
Length = 319
Score = 83.8 bits (206), Expect = 3e-14, Method: Composition-based stats.
Identities = 33/154 (21%), Positives = 68/154 (44%), Gaps = 7/154 (4%)
Query: 169 SNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAE 228
+ +R +++ P AL++++ +E+G + A+ V ++ P+ E + E
Sbjct: 134 KFVAGRRAAALGFQLPQALEIIVRSLEAGHPVPTAIALVGREMSD---PVGTEFGMAADE 190
Query: 229 LSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAE 288
+++ N + A E R Q V + +R G ++ L++ S R M +
Sbjct: 191 IAYGANLEQAIERMAERCQHPDVDLFAATVRLQERTGGNLTGLLKLNASTIRERHKMRLK 250
Query: 289 KKAASLGPKLTVPMIIFFLPVL---ILVIIGPAI 319
KAAS + + MI+ P + +++II P
Sbjct: 251 IKAASAEGRASA-MILSAAPFIAVGMIMIISPKF 283
>gi|86147460|ref|ZP_01065772.1| Flp pilus assembly protein TadB [Vibrio sp. MED222]
gi|85834753|gb|EAQ52899.1| Flp pilus assembly protein TadB [Vibrio sp. MED222]
Length = 321
Score = 83.8 bits (206), Expect = 3e-14, Method: Composition-based stats.
Identities = 45/296 (15%), Positives = 115/296 (38%), Gaps = 28/296 (9%)
Query: 18 ITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDS 77
+ V++ + A+++P+ G K + R ++ + + S L+ +
Sbjct: 9 VLLFVAVLFISQALLLPAAG--------KKAKHKELTRRLKETQRNIDEESLSLLKDHYN 60
Query: 78 KSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFG 137
K L +KL + D + L AG + +L+ L++ + + ++ ++
Sbjct: 61 KELSPLDRKLIVIPFFAD--LKRMLELAGL--KITLSRFLLIVFLCATLLALVALV---- 112
Query: 138 YDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESG 197
+ + +++ N V R + + P+ALD++ +++G
Sbjct: 113 --------SNQVWFICVAAFVFAWVVAYLFVQNRVTYRMARFEEQLPEALDIIRRALQAG 164
Query: 198 ISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQA 257
+ Q+ V E++ P+ E T L++ + ++A R + + A
Sbjct: 165 QPLVQSFNEVGEEM---PEPIGVEFKNTYNLLNYGYDLRLAIMQMTERAPTVSMLAFSSA 221
Query: 258 LIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILV 313
++ G ++ ++L+ + R+ +E + K S +L+ I+ P ++
Sbjct: 222 VMLQKETGGNLSENLQKVSEVLRARFKLERKIKTLSAESRLSA-WILTLSPFVLFF 276
>gi|222445846|ref|ZP_03608361.1| hypothetical protein METSMIALI_01490 [Methanobrevibacter smithii
DSM 2375]
gi|222435411|gb|EEE42576.1| hypothetical protein METSMIALI_01490 [Methanobrevibacter smithii
DSM 2375]
Length = 305
Score = 83.8 bits (206), Expect = 3e-14, Method: Composition-based stats.
Identities = 39/242 (16%), Positives = 90/242 (37%), Gaps = 22/242 (9%)
Query: 82 NFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKL 141
KLN + ++ NKL + L L + + I + L + I G++
Sbjct: 43 KLFTKLNFSEVKKQKDTQNKLFNK--LRKIFLKYFLGKKTIATEILMFLVLFAIAGFEI- 99
Query: 142 LEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISID 201
+ + ++++I P + + + + P AL + +++G +
Sbjct: 100 ----AGIYLTSIVMIYIFMLYFPKI----SQKHQYDDLNFELPYALRHMATELKAGKGLH 151
Query: 202 QALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQS 261
L V+ LS E + E+ + + + A R + + A ++ +
Sbjct: 152 DTLLTVSI---ANYGSLSGEFKRVLKEIKYGKSSEDALMEMSLRVSSEGLSRAVHQIVGT 208
Query: 262 DRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILS 321
R G ++ +SL V+ + + ++ ++ + L F L + I+ P I+
Sbjct: 209 LRVGGNLANSLNVIAEDISFDMQIKLKEYSQKLNG--------FILIYTFIAILAPVIIL 260
Query: 322 II 323
I+
Sbjct: 261 IM 262
>gi|148642656|ref|YP_001273169.1| type II secretion system protein, GspF [Methanobrevibacter smithii
ATCC 35061]
gi|148551673|gb|ABQ86801.1| type II secretion system protein, GspF [Methanobrevibacter smithii
ATCC 35061]
Length = 305
Score = 83.8 bits (206), Expect = 4e-14, Method: Composition-based stats.
Identities = 40/242 (16%), Positives = 91/242 (37%), Gaps = 22/242 (9%)
Query: 82 NFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKL 141
KLN + ++I NKL + L L + + I + L + I G++
Sbjct: 43 KLFTKLNFSEVKKQKDIQNKLFNK--LRKIFLKYFLGKKTIATEILMFLVLFAIAGFEI- 99
Query: 142 LEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISID 201
+ + ++++I P + + + + P AL + +++G +
Sbjct: 100 ----AGIYLTSIVMIYIFMLYFPKI----SQKHQYDDLNFELPYALRHMATELKAGKGLH 151
Query: 202 QALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQS 261
L V+ LS E + E+ + + + A R + + A ++ +
Sbjct: 152 DTLLTVSI---ANYGSLSGEFKRVLKEIKYGKSSEDALMEMSLRVSSEGLSRAVHQIVGT 208
Query: 262 DRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILS 321
R G ++ +SL V+ + + ++ ++ + L F L + I+ P I+
Sbjct: 209 LRVGGNLANSLNVIAEDISFDMQIKLKEYSQKLNG--------FILIYTFIAILAPVIIL 260
Query: 322 II 323
I+
Sbjct: 261 IM 262
>gi|84489944|ref|YP_448176.1| hypothetical protein Msp_1152 [Methanosphaera stadtmanae DSM 3091]
gi|84373263|gb|ABC57533.1| conserved hypothetical membrane-spanning protein [Methanosphaera
stadtmanae DSM 3091]
Length = 307
Score = 83.8 bits (206), Expect = 4e-14, Method: Composition-based stats.
Identities = 33/156 (21%), Positives = 72/156 (46%), Gaps = 10/156 (6%)
Query: 154 ILIGYVGFCAPS----VWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAE 209
I+I + PS ++IS + R+ +I+ PD L+ + + G+ + AL +++
Sbjct: 67 IIISVLFLFLPSVIMIIYISYNREHRKENIEEQLPDYLNQIASLLNVGLGFESALEELSK 126
Query: 210 DIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIG 269
G PL+ E+ + E F + + NR +D +R Q +I + G ++
Sbjct: 127 TSKG---PLNNEIKQLLIETQFKKPFNESLMDIANRNDLDNLRYIFQIIIHTRESGGNLA 183
Query: 270 DSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
+ L + + + L++ +++A ++V +II
Sbjct: 184 EVLEDISHDLKEIILLKKQRRA---SVMMSVMLIII 216
>gi|261349609|ref|ZP_05975026.1| putative bacterial type II secretion system protein F domain
protein [Methanobrevibacter smithii DSM 2374]
gi|288861567|gb|EFC93865.1| putative bacterial type II secretion system protein F domain
protein [Methanobrevibacter smithii DSM 2374]
Length = 305
Score = 83.8 bits (206), Expect = 4e-14, Method: Composition-based stats.
Identities = 39/242 (16%), Positives = 90/242 (37%), Gaps = 22/242 (9%)
Query: 82 NFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKL 141
KLN + ++ NKL + L L + + I + L + I G++
Sbjct: 43 KLFTKLNFSEVKKQKDTQNKLFNK--LRKIFLKYFLGKKTIATEILMFLVLFAIAGFEI- 99
Query: 142 LEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISID 201
+ + ++++I P + + + + P AL + +++G +
Sbjct: 100 ----AGIYLTSIVMIYIFMLYFPKI----SQKHQYDDLNFELPYALRHMATELKAGKGLH 151
Query: 202 QALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQS 261
L V+ LS E + E+ + + + A R + + A ++ +
Sbjct: 152 DTLLTVSI---ANYGSLSGEFKRVLKEIKYGKSSEDALMEMSLRVSSEGLSRAVHQIVGT 208
Query: 262 DRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILS 321
R G ++ +SL V+ + + ++ ++ + L F L + I+ P I+
Sbjct: 209 LRVGGNLANSLNVIAEDISFDMQIKLKEYSQKLNG--------FILIYTFIAILAPVIIL 260
Query: 322 II 323
I+
Sbjct: 261 IM 262
>gi|212635450|ref|YP_002311975.1| Tight adherence TadB-like transmembrane protein [Shewanella
piezotolerans WP3]
gi|212556934|gb|ACJ29388.1| Tight adherence TadB-like transmembrane protein, putative
[Shewanella piezotolerans WP3]
Length = 325
Score = 83.8 bits (206), Expect = 4e-14, Method: Composition-based stats.
Identities = 54/306 (17%), Positives = 117/306 (38%), Gaps = 24/306 (7%)
Query: 9 FDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSA 68
+ E+ +++ L A+ +P + A+ R+ L+ S
Sbjct: 1 MFSNEVIFLGLIFIAVIFLSQALFLPVYSPQRVNT-----ALVRKRLKSLSEDSENTTYE 55
Query: 69 SSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFL 128
+S LR L + L + D + +L A + + + L + L+ I
Sbjct: 56 TSLLRKSRLAKLGTIGRYLESFQFIED--LSYRLELADY--KLLGHQYLFLALITATILA 111
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
+ +++ + A + + + + + KR I+ ++PDALD
Sbjct: 112 VGAWLYL------------AEIIAGMFVFGLVLFLFNFKLVRDTNKRMDKIEESFPDALD 159
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
+L +++G S A++ V E++ G PL++E L A +++ + + A +F R
Sbjct: 160 VLRRALQAGYSFSDAVKLVTEEMEG---PLAKEFSLMFANINYSKDTKRALLSFIERVPS 216
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP 308
A++ G ++ ++++ L R + S +L+ ++I
Sbjct: 217 VSAMAFASAVMVQKETGGNLAENIQNLSRVIRLRFTFRRRVRTLSAEGRLSAWILILLPF 276
Query: 309 VLILVI 314
VL VI
Sbjct: 277 VLFAVI 282
>gi|84685157|ref|ZP_01013056.1| Putative Flp pilus assembly protein TadB [Maritimibacter
alkaliphilus HTCC2654]
gi|84666889|gb|EAQ13360.1| Putative Flp pilus assembly protein TadB [Rhodobacterales bacterium
HTCC2654]
Length = 316
Score = 83.8 bits (206), Expect = 4e-14, Method: Composition-based stats.
Identities = 55/298 (18%), Positives = 111/298 (37%), Gaps = 33/298 (11%)
Query: 16 VAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTR 75
A+ +++ +L + +V+ + +R+ Q
Sbjct: 7 TALLIGLAVLALCLIGAAVWQVRRPADD-----SVQLDRMRRMQAGGDAGTGDR------ 55
Query: 76 DSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWI 135
LR V++ L + + I ++R AG + + L+LG +
Sbjct: 56 ----LRKLVERTALDGLPILGTIPVRMRRAG--------------MTLSPNVLVLGSALV 97
Query: 136 FGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVE 195
L+ A ++ VG P++ IS KR ++ R PDALDL+ +
Sbjct: 98 TSLLFLVLQGVIGAGLAFVVAVGVGVLVPTLVISTAALKRADALTRQLPDALDLMKRGLS 157
Query: 196 SGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNAT 255
G ++ +R VA + P++ E + ++++ + A ++ R ++ +
Sbjct: 158 VGHPLNVTIRNVATTLPD---PIAAEFRILADQVAYGDSLTDAVDDLARRIDIEDFHYLS 214
Query: 256 QALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILV 313
A+ G ++G L L R M A S ++T +I+ +PVL+ V
Sbjct: 215 AAVQIQHATGGNLGAMLETLARVIRGRFAMRRRVSAVSSEGRITA-IILSAMPVLMYV 271
>gi|282863647|ref|ZP_06272705.1| type II secretion system protein [Streptomyces sp. ACTE]
gi|282561348|gb|EFB66892.1| type II secretion system protein [Streptomyces sp. ACTE]
Length = 272
Score = 83.4 bits (205), Expect = 4e-14, Method: Composition-based stats.
Identities = 34/149 (22%), Positives = 62/149 (41%), Gaps = 6/149 (4%)
Query: 178 SIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQV 237
++ P DLL C+ +G A V E +GG P+ + ++ T AE+
Sbjct: 126 AVTAQLPLVADLLAACLSAGAGPRDAAEAVGESLGG---PVGDRLVRTAAEIRLGGEPSE 182
Query: 238 AFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPK 297
A+ F + + L ++ G D + + E R+ER A +A G
Sbjct: 183 AWGRFGE---IPGAARLARCLERAGATGAPAADPVSRVADEMRAERASAAVARAQRAGVL 239
Query: 298 LTVPMIIFFLPVLILVIIGPAILSIIDTM 326
+T P+ + FLP + V + P ++ + +
Sbjct: 240 ITAPVGLCFLPAFLAVGVAPVVIGLATGL 268
>gi|302343415|ref|YP_003807944.1| Type II secretion system F domain protein [Desulfarculus baarsii
DSM 2075]
gi|301640028|gb|ADK85350.1| Type II secretion system F domain protein [Desulfarculus baarsii
DSM 2075]
Length = 322
Score = 83.4 bits (205), Expect = 4e-14, Method: Composition-based stats.
Identities = 31/149 (20%), Positives = 66/149 (44%), Gaps = 3/149 (2%)
Query: 166 VWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLT 225
+ +S + KR S + +P+A++L+ + +G S LR V E++G P++ E T
Sbjct: 134 MAVSKIKAKRLSVFESQFPEAVELVGRALRAGHSFSAGLRMVGEELGE---PVASEFNKT 190
Query: 226 IAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLM 285
+ SF + A R +++ V+ A+ G ++ + L + R +
Sbjct: 191 FEDYSFGKTMEEALTGLVRRVELEDVKFFASAVSLQRETGGNLTEILDNIAYIIRERFRL 250
Query: 286 EAEKKAASLGPKLTVPMIIFFLPVLILVI 314
+ +A S +L+ ++ P L ++
Sbjct: 251 QRTVRALSAEGRLSGWILSLMPPALFAML 279
>gi|304311187|ref|YP_003810785.1| type II secretion system protein F [gamma proteobacterium HdN1]
gi|301796920|emb|CBL45133.1| type II secretion system protein F [gamma proteobacterium HdN1]
Length = 295
Score = 83.4 bits (205), Expect = 4e-14, Method: Composition-based stats.
Identities = 35/199 (17%), Positives = 79/199 (39%), Gaps = 5/199 (2%)
Query: 98 IVNKLRAAGFRSEYSLNILLVVRLVVPII--FLILGIIWIFGYDKLLEYPFQLRVGAVIL 155
+V ++ A +R ++ + +R V +I + + G F + + ++
Sbjct: 37 VVARISFALYRRQFYSQVDQGLRDVFMLIDPGQVFAVTIGLGILICPLLFFFVSPFSAVV 96
Query: 156 IGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQS 215
G + AP + + + R + PDAL + ++SG+++ ++L++V Q
Sbjct: 97 GGMLIMFAPRYVLLEMKKNRSDKFVKQMPDALAAMSTALKSGLNLVKSLQQVV---RNQP 153
Query: 216 VPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVL 275
PL++E + E + +F + R V A+ + G ++ + L
Sbjct: 154 EPLAQEFAQVLVEYRIGTDLNDSFGDLAKRIDRPEVVLMNSAIRINRSVGGNLAATFENL 213
Query: 276 VSETRSERLMEAEKKAASL 294
R +E + KA +
Sbjct: 214 ADSLRETSKVEGKIKAMTA 232
>gi|186473166|ref|YP_001860508.1| type II secretion system protein [Burkholderia phymatum STM815]
gi|184195498|gb|ACC73462.1| type II secretion system protein [Burkholderia phymatum STM815]
Length = 275
Score = 83.4 bits (205), Expect = 4e-14, Method: Composition-based stats.
Identities = 36/187 (19%), Positives = 78/187 (41%), Gaps = 4/187 (2%)
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
+ +I + L + A+ + V + P +S + +R +++R PD L
Sbjct: 50 AAVTLIAMVALPVLSLLLSGSVLVALASLPLV-WFVPRRVLSWMRTRRIETLERQLPDML 108
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQ 247
++ + +G S AL ++ P+S+E L + E+ + VA N R
Sbjct: 109 LMIAGGLRAGASFPIALESAVQE---SVPPISQEFDLLLREIRLGIDLDVAMRNIEQRIP 165
Query: 248 MDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFL 307
+ T A++ S G ++ +L + S R + ME + +A + ++ ++
Sbjct: 166 VPDFMMVTAAVMISREVGGNLAQALESVASTLRDKLQMEGKIRALTSQGRMQGIVMTCLP 225
Query: 308 PVLILVI 314
L++V+
Sbjct: 226 LFLMMVL 232
>gi|292491526|ref|YP_003526965.1| type II secretion system protein [Nitrosococcus halophilus Nc4]
gi|291580121|gb|ADE14578.1| type II secretion system protein [Nitrosococcus halophilus Nc4]
Length = 323
Score = 83.4 bits (205), Expect = 4e-14, Method: Composition-based stats.
Identities = 52/299 (17%), Positives = 119/299 (39%), Gaps = 27/299 (9%)
Query: 13 ELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRL 72
+L I +++F L A+++P+ G+ + A + R Q +A S L
Sbjct: 5 QLIFLIMVFLAVFLLATAIIVPTFGTS-------AQAAKNLRRRIQGAIEELDPAAISLL 57
Query: 73 RTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGI 132
R + L + + +V + ++ +G + +L L + + L+
Sbjct: 58 REKSFHKLSPLERWIEGLPGMV--RLSLLIKQSGRETAAYRVVLFAFSLGMGLGLLV--- 112
Query: 133 IWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLI 192
W+ LL + L+ +V F P + I KR + P+ALD++
Sbjct: 113 -WVLARSPLLGF----------LVAFVSFIFPILRIRIERDKRIGKFEEQLPEALDIMSR 161
Query: 193 CVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVR 252
+++G + L +E++ PL++E T A++++ N + AF + R +
Sbjct: 162 AMKAGYPFVETLHVASEEMRD---PLAKEFRTTFADINYGMNIKTAFLSLLQRVPSMSLM 218
Query: 253 NATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLI 311
++ G ++ + L + + R + + + + +L+ I+ +P ++
Sbjct: 219 AVVTGVLVQRDTGGNLAEILEKIAAVVRGRFRFQRKVRTFTAEGRLSA-WILTLVPFVL 276
>gi|325964125|ref|YP_004242031.1| Flp pilus assembly protein TadB [Arthrobacter phenanthrenivorans
Sphe3]
gi|323470212|gb|ADX73897.1| Flp pilus assembly protein TadB [Arthrobacter phenanthrenivorans
Sphe3]
Length = 310
Score = 83.4 bits (205), Expect = 4e-14, Method: Composition-based stats.
Identities = 63/312 (20%), Positives = 114/312 (36%), Gaps = 41/312 (13%)
Query: 17 AITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRD 76
A+ V++ L V++PS L++R E E + + RL T
Sbjct: 7 AVILLVAVSLLGVTVLLPSAPRVPLDRRR---PFESEPPSSLSRLAGSAVRSFERLLTGR 63
Query: 77 SKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIF 136
L + + L AG R + L+V I + ++ I
Sbjct: 64 DVKLFSRAE----------------LENAGLRLSQAE-----FFLLVGIGGSVGMLVGIV 102
Query: 137 GYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVES 196
L + + ++ +VG + + L KR+++ D L LL + +
Sbjct: 103 TVGPL------VGLLLTVVAPFVG----KLVLGFLAGKRRAAFDSQLGDTLQLLSGGLRA 152
Query: 197 GISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQ 256
G SI +A+ A + P SEEM I E S + A + R Q + +Q
Sbjct: 153 GHSILRAIDAAAAE---SQKPTSEEMRRVITETSLGRDLLAALNDTAERMQNEDFVWISQ 209
Query: 257 ALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP---VLILV 313
A+ + G ++ D L R ++ KA + K + I+ +P V +LV
Sbjct: 210 AIQINREVGGNLADVLDQTGETIRERSEIKGHIKALAAEGKFSA-YILIAMPFGIVAMLV 268
Query: 314 IIGPAILSIIDT 325
+ P ++ + +
Sbjct: 269 AMSPTYMNSMFS 280
>gi|84496011|ref|ZP_00994865.1| putative integral membrane protein [Janibacter sp. HTCC2649]
gi|84382779|gb|EAP98660.1| putative integral membrane protein [Janibacter sp. HTCC2649]
Length = 302
Score = 83.4 bits (205), Expect = 5e-14, Method: Composition-based stats.
Identities = 35/216 (16%), Positives = 83/216 (38%), Gaps = 6/216 (2%)
Query: 110 EYSLNILLVVRLVVPIIFLILGIIWIFGYD-KLLEYPFQLRVGAVILIGYVGFCAPSVWI 168
++ +++ ++ L + + + PF + V A I F P +
Sbjct: 87 RKPVSRFYGEKILFAMVGLAIPPLLTAVFTLGGANLPFVIPVVATIGFAAAMFFLPDYNV 146
Query: 169 SNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGG-QSVPLSEEMLLTIA 227
+ ++ ++ R+ +DL+ + +G QA+ A LSEE+ T
Sbjct: 147 RDDAKRARAEFSRSLGAYIDLVALERNNGAGPRQAMEAAAAGGDSWVFRRLSEELARTRW 206
Query: 228 ELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEA 287
A + + + + + S G + LR + R+ L
Sbjct: 207 ---SGLTPWEALRALGDELGLPELDDLADIMRLSGEEGAQVYAQLRARSAGMRTAMLNTE 263
Query: 288 EKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSII 323
+ KA +G ++++PM + + + + +++ PA+L ++
Sbjct: 264 KAKANEIGERMSIPMSLLGV-IFLAILVAPALLRVM 298
>gi|126725974|ref|ZP_01741816.1| Putative Flp pilus assembly protein TadB [Rhodobacterales bacterium
HTCC2150]
gi|126705178|gb|EBA04269.1| Putative Flp pilus assembly protein TadB [Rhodobacterales bacterium
HTCC2150]
Length = 323
Score = 83.4 bits (205), Expect = 5e-14, Method: Composition-based stats.
Identities = 32/175 (18%), Positives = 68/175 (38%), Gaps = 6/175 (3%)
Query: 123 VPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRA 182
+ +I +L ++ F F +R+ L+G W++ +KR ++
Sbjct: 95 LVMIMGVLSVVVYFSMTIGTGASFPIRLIVSPLMGMGAVY---FWVNGKAKKRLGMMEEQ 151
Query: 183 WPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENF 242
PDA++L++ ++ G A+ VA + P+ E + E ++ + +
Sbjct: 152 LPDAIELMVRSLKVGHPFSSAIAAVAAE---SPDPIGTEFGVIADEAAYGGEITDSLQEM 208
Query: 243 YNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPK 297
R M +R + + G ++ + L L S RS + + A + K
Sbjct: 209 AERLDMQDLRFLAVVVGIQAKSGGNLAEILEGLASVIRSRFRLFRKVAAITAEAK 263
>gi|15789974|ref|NP_279798.1| hypothetical protein VNG0822C [Halobacterium sp. NRC-1]
gi|10580392|gb|AAG19278.1| conserved hypothetical protein [Halobacterium sp. NRC-1]
Length = 535
Score = 83.0 bits (204), Expect = 6e-14, Method: Composition-based stats.
Identities = 41/223 (18%), Positives = 84/223 (37%), Gaps = 10/223 (4%)
Query: 97 NIVNKLRAAGFRSEYSLNILL-----VVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVG 151
I +LR +R L ++L + + PI + LG W + P
Sbjct: 225 AISERLRPVLYRLRNPLTVVLETPTLLFWVSCPIAAVYLGSQWWAPLSTGVFAPAAYDDA 284
Query: 152 AVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDI 211
V +V + ++R+ +I+ PD LD E+G+ A+ +
Sbjct: 285 LVHATVFVVGTFAVAY--ETARRRRKAIEAEVPDFLDRFASTNEAGM---AAVESFGRTV 339
Query: 212 GGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDS 271
G L++E+ T A++ + + A F +R V + ++G
Sbjct: 340 DGDLGALTQELERTWADIQWGARIEHALTRFRDRVNTPAVSRVVALTTNAMAASGNLGPV 399
Query: 272 LRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVI 314
LR+ +E + R +E +++ L + + + F +I+ +
Sbjct: 400 LRIAANEATASRRLERDRRNELLTYVVVIYVSFFVFIAIIVAL 442
>gi|319779647|ref|YP_004130560.1| Flp pilus assembly protein TadB [Taylorella equigenitalis MCE9]
gi|317109671|gb|ADU92417.1| Flp pilus assembly protein TadB [Taylorella equigenitalis MCE9]
Length = 281
Score = 83.0 bits (204), Expect = 6e-14, Method: Composition-based stats.
Identities = 34/190 (17%), Positives = 78/190 (41%), Gaps = 4/190 (2%)
Query: 140 KLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGIS 199
L Y I+ V P + L++KRQ + + +PD L L ++SG
Sbjct: 66 GLFIYLLTRSWMFSIVFAVVILILPPLGAKWLIKKRQKKLIQQFPDFLLSLSNALKSGAG 125
Query: 200 IDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALI 259
+ +++ + E P+S+E L + ++ + + + R + +
Sbjct: 126 LQHSIKLINE---TSEKPISQEFALFLHQIRLGSSVEESLTVLLQRNPSMNMSQFVTLVK 182
Query: 260 QSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAI 319
S + G ++ + L VL + R L+ + A + ++ I+ LP+ +L+++
Sbjct: 183 VSYKTGGNLANMLEVLSTNMRENNLLIKKIDALTSQSRMQS-WIMTLLPIFLLMVLSVVA 241
Query: 320 LSIIDTMKDH 329
++ + +H
Sbjct: 242 PNLTNYFWEH 251
>gi|258627497|ref|ZP_05722278.1| Flp pilus assembly protein TadB [Vibrio mimicus VM603]
gi|262165915|ref|ZP_06033652.1| flp pilus assembly protein TadB [Vibrio mimicus VM223]
gi|262171239|ref|ZP_06038917.1| flp pilus assembly protein TadB [Vibrio mimicus MB-451]
gi|258580303|gb|EEW05271.1| Flp pilus assembly protein TadB [Vibrio mimicus VM603]
gi|261892315|gb|EEY38301.1| flp pilus assembly protein TadB [Vibrio mimicus MB-451]
gi|262025631|gb|EEY44299.1| flp pilus assembly protein TadB [Vibrio mimicus VM223]
Length = 321
Score = 82.6 bits (203), Expect = 7e-14, Method: Composition-based stats.
Identities = 52/299 (17%), Positives = 116/299 (38%), Gaps = 27/299 (9%)
Query: 18 ITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDS 77
I ++ + A+++P+ GS K + E ++ Q+ SL ++ L +D
Sbjct: 9 ILLFFAVVFISQALILPAAGSKAKHKELAQRLKETQMNLDQEARSLLQEHYLKSLSPQD- 67
Query: 78 KSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFG 137
+SL F +LK + + L +L + ++ + + +LG W
Sbjct: 68 RSLVKFAVFASLKKSIELSGLDWSLTQ-------TLTVCSIISVSIMSTLALLGQAWFL- 119
Query: 138 YDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESG 197
V+ G V + ++ + R S + PDALD++ +++G
Sbjct: 120 ---------------VLAGGVVVWFVLQFFLQKRIADRLSRFEEQLPDALDIIRRMLQAG 164
Query: 198 ISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQA 257
+ QA V +++ P+ E T L++ + ++A RT + A
Sbjct: 165 QPVTQAFNEVGKEMAA---PIGLEFKNTFNLLNYGYDMRLAIMQMAERTPTVSMLAFASA 221
Query: 258 LIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIG 316
++ G ++ ++L + R + + K S +L+ +++ VL + ++
Sbjct: 222 VMLQKETGGNLSENLEKVGKVLRQRFKLTRKIKTLSAESRLSAWILVLSPFVLFIGLMF 280
>gi|289643196|ref|ZP_06475323.1| type II secretion system protein [Frankia symbiont of Datisca
glomerata]
gi|289506967|gb|EFD27939.1| type II secretion system protein [Frankia symbiont of Datisca
glomerata]
Length = 349
Score = 82.6 bits (203), Expect = 7e-14, Method: Composition-based stats.
Identities = 44/228 (19%), Positives = 76/228 (33%), Gaps = 34/228 (14%)
Query: 130 LGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDL 189
G + P + V I++G + + Q+RQ+ + P ALDL
Sbjct: 122 AAFSAAAGLGPAVILPVPVGVTVGIIVGMIAARLLASIPDQDAQRRQARLVEDLPLALDL 181
Query: 190 LLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENF------- 242
+ C+ +G I AL VA G PL E+ + L + A
Sbjct: 182 IAACLTAGAPIVAALDIVA---GAVGGPLGTELGMVSRSLRLGASMAEACGRLLGPEPSS 238
Query: 243 ----YNR--------------------TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSE 278
R + + +AL +S+ G + +L L +
Sbjct: 239 SRPAAKRWTRLVPVGPAPGGLGRPTATAEAHEIAAFARALHRSEESGARLAAALGRLADQ 298
Query: 279 TRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
TR+ R A A G P+ + FLP + + + P ++ +
Sbjct: 299 TRARRQERALTAARRAGVTAVAPLGLCFLPAFVALGVVPVVMGAGSAL 346
>gi|317489756|ref|ZP_07948255.1| hypothetical protein HMPREF1023_01954 [Eggerthella sp. 1_3_56FAA]
gi|316911102|gb|EFV32712.1| hypothetical protein HMPREF1023_01954 [Eggerthella sp. 1_3_56FAA]
Length = 312
Score = 82.6 bits (203), Expect = 7e-14, Method: Composition-based stats.
Identities = 43/282 (15%), Positives = 91/282 (32%), Gaps = 30/282 (10%)
Query: 44 RMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVN--- 100
R + RE LRK ++ S R L + L+ + L ++
Sbjct: 30 RRRDATARRERLRKAADVRDAREGFDSGSR------LVRYATALSQRIALGATEALSRRL 83
Query: 101 -----------KLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLR 149
+ + AG S + + + G + L +
Sbjct: 84 RLSRARAWFCARAKRAGLEQAVSPEGFCEASMRLACAGGLAGALVGSVLSTELAVLGAVA 143
Query: 150 VGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAE 209
A P + ++R ++ + L+++ + + SG+S D+
Sbjct: 144 GVAGGAAAM-----PRA-VKRAQRERADGLESDLSEMLEVVALGLRSGLSFDRGFALYGS 197
Query: 210 DIGGQSVPLSEEMLLTIAELSFL-PNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSI 268
L+ + S NR+ A + +++++S R+G+S+
Sbjct: 198 HF---DSDLARACVGAQHAWSLGLTNREDALRDLAASYDSPLFARVVESMVRSLRFGSSL 254
Query: 269 GDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVL 310
+ L +E R+ + E++ A K+ VP LP +
Sbjct: 255 AEGLESAAAEARAVHRAQVEERVAKAPVKMMVPTGTLILPAM 296
>gi|209545601|ref|YP_002277830.1| type II secretion system protein [Gluconacetobacter diazotrophicus
PAl 5]
gi|209533278|gb|ACI53215.1| type II secretion system protein [Gluconacetobacter diazotrophicus
PAl 5]
Length = 317
Score = 82.6 bits (203), Expect = 8e-14, Method: Composition-based stats.
Identities = 53/309 (17%), Positives = 113/309 (36%), Gaps = 25/309 (8%)
Query: 19 TTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSK 78
+ + SL+ + L +R S+A ER R + + A L S
Sbjct: 1 MLGIVLLSLLMTIFSLVTSVVLLYRR--SMATERREGRFEAELGAYRLRA---LPVTASG 55
Query: 79 SLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGY 138
L + LNL A+ R GFR E ++ ++ VV ++ + + G
Sbjct: 56 RLDHLRAALNLSAVTA--------RVFGFRPESYAHMQAGMKRVVGFSAILPVVGLVPGL 107
Query: 139 DKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGI 198
+ L + +++G + F ++ + + + PDAL +++ + GI
Sbjct: 108 LLIGPASPALLLVLWVILGRLAFRIVD-------RRYAAKLFQQLPDALGMIVRSLRVGI 160
Query: 199 SIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQAL 258
+ +AL V ++ P ++E + +++ + N RT + R +
Sbjct: 161 PLSRALIIVGQEAE---YPTADEFRMISQDVAVGKSLGDTLHNLAERTGLQEYRFFATIM 217
Query: 259 IQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVL--ILVIIG 316
+ G ++ D L R A + +++ ++ + I+ II
Sbjct: 218 ALQAQTGGTLADVLASFADMIRQRIAARKRGHALASEARMSCYVLGGIPFAIGGIMSIIN 277
Query: 317 PAILSIIDT 325
P +++ T
Sbjct: 278 PDYMAVFLT 286
>gi|282865304|ref|ZP_06274356.1| type II secretion system protein [Streptomyces sp. ACTE]
gi|282559777|gb|EFB65327.1| type II secretion system protein [Streptomyces sp. ACTE]
Length = 312
Score = 82.2 bits (202), Expect = 9e-14, Method: Composition-based stats.
Identities = 32/191 (16%), Positives = 70/191 (36%), Gaps = 8/191 (4%)
Query: 126 IFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPD 185
++++ ++ ++ + PF +L +G + +++ KR + P+
Sbjct: 89 VYVVAALLALYFVVGSVFAPFF-----GLLAALIGLWGGNAFLNWQRGKRTEAFINQLPE 143
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
+L ++G+++ A+ E++ + EE+ L+ + A R
Sbjct: 144 LTRVLANATQAGLALRTAIGMAVEELDNPAQ---EELRRVADRLAVGHSLDDALNELVER 200
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
+ LI S+R G +I SLR L + E K+T +
Sbjct: 201 LPSRELTVLVSTLILSNRAGGTIVSSLRNLTETLEERKETRREVTTLLSQVKVTAVAVPI 260
Query: 306 FLPVLILVIIG 316
+L+I G
Sbjct: 261 LGLGFLLIING 271
>gi|162147494|ref|YP_001601955.1| type II secretion system protein [Gluconacetobacter diazotrophicus
PAl 5]
gi|161786071|emb|CAP55653.1| putative type II secretion system protein [Gluconacetobacter
diazotrophicus PAl 5]
Length = 319
Score = 82.2 bits (202), Expect = 9e-14, Method: Composition-based stats.
Identities = 54/309 (17%), Positives = 113/309 (36%), Gaps = 25/309 (8%)
Query: 19 TTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSK 78
+ + SL+ + L +R S+A ER R + + A L S
Sbjct: 3 MLGIVLLSLLMTIFSLVTSVVLLYRR--SMATERREGRFEAELGAYRLRA---LPVTASG 57
Query: 79 SLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGY 138
L + LNL A+ R GFR E ++ ++ VV ++ + + G
Sbjct: 58 RLDHLRAALNLSAVTA--------RVFGFRPESYAHMQAGMKRVVGFSAILPVVGLVPGL 109
Query: 139 DKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGI 198
+ L + +++G + F ++ + + + PDAL +++ + GI
Sbjct: 110 LLIGPASPALLLVLWVILGRLAFRIVD-------RRYAAKLFQQLPDALGMIVRSLRVGI 162
Query: 199 SIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQAL 258
+ +AL V ++ P ++E + +++ N N RT + R +
Sbjct: 163 PLSRALIIVGQEAE---YPTADEFRMISQDVAVGKNLGDTLHNLAERTGLQEYRFFATIM 219
Query: 259 IQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVL--ILVIIG 316
+ G ++ D L R A + +++ ++ + I+ II
Sbjct: 220 ALQAQTGGTLADVLASFADMIRQRIAARKRGHALASEARMSCYVLGGIPFAIGGIMSIIN 279
Query: 317 PAILSIIDT 325
P +++ T
Sbjct: 280 PDYMAVFLT 288
>gi|283769335|ref|ZP_06342234.1| type II secretion system F domain protein [Bulleidia extructa
W1219]
gi|283103992|gb|EFC05376.1| type II secretion system F domain protein [Bulleidia extructa
W1219]
Length = 294
Score = 82.2 bits (202), Expect = 1e-13, Method: Composition-based stats.
Identities = 44/227 (19%), Positives = 90/227 (39%), Gaps = 18/227 (7%)
Query: 89 LKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQL 148
L I + EN+ L G +++ +I ++ I G +
Sbjct: 43 LSFINISENLRRYLLTTGL--PLKPEEFILLWGATALILPLITFILNLGLSTM------- 93
Query: 149 RVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVA 208
+L VG + +KR + + P+AL ++ C+ SG + AL RV+
Sbjct: 94 -----VLFFIVGLLLFPLMAEIAKKKRLALFNKQLPEALVIIGNCLRSGFTFRHALARVS 148
Query: 209 EDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSI 268
ED+ P+SEE+ I E+++ + + +RT + A+ R G ++
Sbjct: 149 EDLPN---PISEELKRVIREVNYGRKLEESLGELASRTNSAELEMINSAVTIQQRSGGNL 205
Query: 269 GDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVII 315
+ + + + + + + + + M+I LPV +L+I+
Sbjct: 206 AEIVEKVTETINDRINIRNQIRVLTTQGRYSG-MLIGLLPVFLLIIL 251
>gi|148657457|ref|YP_001277662.1| type II secretion system protein [Roseiflexus sp. RS-1]
gi|148569567|gb|ABQ91712.1| type II secretion system protein [Roseiflexus sp. RS-1]
Length = 335
Score = 82.2 bits (202), Expect = 1e-13, Method: Composition-based stats.
Identities = 48/244 (19%), Positives = 94/244 (38%), Gaps = 21/244 (8%)
Query: 81 RNFVKKLN--LKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGY 138
+ ++LN +K I + L AA ++ +++R+ VP+I L ++
Sbjct: 74 QRIAERLNDVIKRQSFAARIEHDLAAASL--PLTVPEYMLMRIAVPLIITALALL----- 126
Query: 139 DKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGI 198
+V V G S W+ Q+R+ P+ LDL+ + G
Sbjct: 127 -------IWRQVIVVPAALIAGHLGCSFWMRMRRQRRKQEFNDQLPETLDLITASMRGGF 179
Query: 199 SIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQAL 258
S+ Q+L VA D+ + E+ E+ + A +N R + + A+
Sbjct: 180 SLVQSLASVASDVQEPTRT---ELRRVFQEVQLGLSVTQALDNLVQRMESADLDLVVTAI 236
Query: 259 IQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMI--IFFLPVLILVIIG 316
R G ++G L + + R + E + + +++ +I + F LI+ I
Sbjct: 237 KIHARVGGNLGQILENISTTMRERAKLRREVRVITSMQRISSYVIGALPFALALIIFTIN 296
Query: 317 PAIL 320
P +
Sbjct: 297 PTYM 300
>gi|307726379|ref|YP_003909592.1| type II secretion system F domain-containing protein [Burkholderia
sp. CCGE1003]
gi|307586904|gb|ADN60301.1| Type II secretion system F domain protein [Burkholderia sp.
CCGE1003]
Length = 327
Score = 82.2 bits (202), Expect = 1e-13, Method: Composition-based stats.
Identities = 32/195 (16%), Positives = 73/195 (37%), Gaps = 5/195 (2%)
Query: 132 IIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLL 191
+ + P L + +L F P++ + KR ++R P+A D++
Sbjct: 105 VAGVAVLLAASFSPVPLPMLVTVLAAAGAFAFPTLRMLRARSKRLRVLERQLPEAADMIS 164
Query: 192 ICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCV 251
+ +G S A+ + + P E + E+++ A N R + +
Sbjct: 165 RALRAGHSFSSAIGMLGNEFAE---PTGGEFRIVFDEINYGVTLNEALLNLATRVPVSDL 221
Query: 252 RNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVL- 310
R A++ G ++ + L + S R + + + S +L+ +I
Sbjct: 222 RYFVIAVLIQRETGGNLAEILDGIASLVRERLRLFDQVRVLSAEGRLSAWIIGLLPFAAA 281
Query: 311 -ILVIIGPAILSIID 324
+ ++ P+ LS++
Sbjct: 282 GAMNLLNPSFLSVLW 296
>gi|325518834|gb|EGC98408.1| flp type pilus assembly protein [Burkholderia sp. TJI49]
Length = 325
Score = 81.8 bits (201), Expect = 1e-13, Method: Composition-based stats.
Identities = 53/292 (18%), Positives = 106/292 (36%), Gaps = 27/292 (9%)
Query: 18 ITTAVSIFSLIYAVVIPSLGS-GELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRD 76
I T V++ I G +R++S +R + S L+ R
Sbjct: 10 ILTFVAVVLAIEGAYQWWSARHGTAARRIES------RIRAMSAGGQVQQERLSILKQRM 63
Query: 77 SKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIF 136
+ F +L L+ V I L+ +G ++S+ L+ + +++P + ++ F
Sbjct: 64 LDESKPF-DRLLLRMPRVKS-IDLLLQQSGL--DWSVAKLIALSVMLP---PLAWLVLSF 116
Query: 137 GYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVES 196
L A P + + R ++R PD D++ + S
Sbjct: 117 TALPLPAVLLLALPSAC---------LPVLRVMRRRAARMRKLQRQLPDVCDMIARALRS 167
Query: 197 GISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQ 256
G + AL V E+ P+ E +T E+++ + A N R + +R
Sbjct: 168 GHAFTGALGMVGEEF---PEPMGGEFRITFDEINYGVSLHDALMNLATRVPVQDLRYFVI 224
Query: 257 ALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP 308
A++ G ++ + L + R + + + S +L+ I+ LP
Sbjct: 225 AVLIQRETGGNLAELLDSIAGLIRERFKLFDKVRVLSAEGRLSA-WILGLLP 275
>gi|251789650|ref|YP_003004371.1| type II secretion system protein [Dickeya zeae Ech1591]
gi|247538271|gb|ACT06892.1| type II secretion system protein [Dickeya zeae Ech1591]
Length = 325
Score = 81.8 bits (201), Expect = 1e-13, Method: Composition-based stats.
Identities = 31/183 (16%), Positives = 70/183 (38%), Gaps = 4/183 (2%)
Query: 126 IFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPD 185
+ ++ + + G P L G ++ + ++ + +QK ++ + PD
Sbjct: 98 VMMLFALCLVVGMAIGRRTPMPLTSG-LLFSFALTVAIGAMLFRSTLQKHLHQLRESLPD 156
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
A+D + +G+ + +VA + G PL+ E L L + + R
Sbjct: 157 AIDAITRSCRAGVPVANTFGQVAAHLSG---PLANEFRLIDHWLKLGVPLRQVIQTSAGR 213
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
M R LI + G +G++L L + R R + + ++ + + + ++
Sbjct: 214 VPMAEYRFFVVILIINQEAGGRLGETLERLSATLRQRRELALKVQSKTSEARASAKIVAA 273
Query: 306 FLP 308
P
Sbjct: 274 LFP 276
>gi|148261009|ref|YP_001235136.1| type II secretion system protein [Acidiphilium cryptum JF-5]
gi|326404409|ref|YP_004284491.1| putative type II secretion system protein [Acidiphilium multivorum
AIU301]
gi|146402690|gb|ABQ31217.1| type II secretion system protein [Acidiphilium cryptum JF-5]
gi|325051271|dbj|BAJ81609.1| putative type II secretion system protein [Acidiphilium multivorum
AIU301]
Length = 319
Score = 81.8 bits (201), Expect = 1e-13, Method: Composition-based stats.
Identities = 55/315 (17%), Positives = 124/315 (39%), Gaps = 33/315 (10%)
Query: 12 TELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSR 71
T L I ++ + ++ + ++ K++ + +++ +D+A++
Sbjct: 2 TGLLSLILPLSAVMASALVLLGLNFVR--ADRMQKALDARLARVSGRRLVVSSQDAAAA- 58
Query: 72 LRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILG 131
S L F + LN +L+ ++V + + ++ + I +L+
Sbjct: 59 -----SDPLARFRRPLNSALLLLGVDLVRAPD---YPMPWWAIVIAAAVISRGIAYLVGA 110
Query: 132 IIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLL 191
+I G+ I+ + A + + +R +++ +PDAL ++
Sbjct: 111 LIPGLGW---------------IVWPPLFLLASRLAFGAVHARRATALLNQFPDALATIV 155
Query: 192 ICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCV 251
CV GI + +ALR V++D+ P S E +++ ++A +R +
Sbjct: 156 RCVRVGIPVQEALRVVSQDM---PAPTSREFGRIADQVAIGTPLELALRQMADRAHLAEY 212
Query: 252 RNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP--- 308
A+ RYG + +L L R M+A A + + + +I+ +P
Sbjct: 213 GFFATAISLQARYGGGLAQTLEGLAEVIRKRVAMKARGYALASEARTSA-LILGIIPLVA 271
Query: 309 VLILVIIGPAILSII 323
L + +I PA L ++
Sbjct: 272 ALAIEVIQPAYLRVL 286
>gi|326797331|ref|YP_004315151.1| type II secretion system F domain protein [Marinomonas mediterranea
MMB-1]
gi|326548095|gb|ADZ93315.1| Type II secretion system F domain protein [Marinomonas mediterranea
MMB-1]
Length = 327
Score = 81.8 bits (201), Expect = 1e-13, Method: Composition-based stats.
Identities = 36/174 (20%), Positives = 73/174 (41%), Gaps = 4/174 (2%)
Query: 136 FGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWI-SNLVQKRQSSIKRAWPDALDLLLICV 194
L Q +GA +L+ F A V + N + K K+ P A+D ++ V
Sbjct: 107 LLLGFTLGKSSQFPIGASVLLSLGFFFALIVLLYRNAMGKHLKEFKQNLPQAIDSIVRVV 166
Query: 195 ESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNA 254
++G+ A +A ++ G PL++E+ L LS + + A ++ R ++ R
Sbjct: 167 KAGVPATNAFGLIANNLPG---PLAKELALIDKWLSLGLSLRQAMQDSAIRVPLNEYRFF 223
Query: 255 TQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP 308
L+ + G + D+L L R + + + +A + + + ++ P
Sbjct: 224 AVILVINQEAGGRLSDTLERLSETLRERQELALKIRAKTSEVRASAVIVAMLAP 277
>gi|157961841|ref|YP_001501875.1| type II secretion system protein [Shewanella pealeana ATCC 700345]
gi|157846841|gb|ABV87340.1| type II secretion system protein [Shewanella pealeana ATCC 700345]
Length = 325
Score = 81.8 bits (201), Expect = 1e-13, Method: Composition-based stats.
Identities = 55/306 (17%), Positives = 119/306 (38%), Gaps = 24/306 (7%)
Query: 9 FDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSA 68
+ ++ +++ L A+ +P A+ R+ L+K S
Sbjct: 1 MFSNQVIFLGLVFIAVLFLSQALFLPVYSPQRANS-----ALVRKRLKKLSEESGDITYE 55
Query: 69 SSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFL 128
+S LR L + L + EN+ +L A ++ L+ + ++ +F
Sbjct: 56 TSLLRKSRLGKLGPIGRWLEHFQFI--ENLSYRLELADYK-------LMGHQYIMLALFS 106
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
+ ++ + + + A + +V + ++ KR I+ ++PDALD
Sbjct: 107 ASAV-------AVMGWLYLGELVAAAFMFFVMLFLFNFKLNRDTSKRMDKIEESFPDALD 159
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
+L +++G S A++ V E++ G PL++E L A +++ + + A F R
Sbjct: 160 VLRRALQAGYSFSDAIKLVTEEMDG---PLAKEFSLMFANINYSKDTKRALLGFIERVPS 216
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP 308
A++ G ++ +++ L R + S +L+ ++I
Sbjct: 217 VSAMAFASAVMVQKETGGNLAENINNLARVIRLRFTFRRRVRTLSAEGRLSAWILILLPF 276
Query: 309 VLILVI 314
VL VI
Sbjct: 277 VLFAVI 282
>gi|291333378|gb|ADD93083.1| hypothetical protein [uncultured archaeon MedDCM-OCT-S05-C205]
Length = 529
Score = 81.8 bits (201), Expect = 1e-13, Method: Composition-based stats.
Identities = 34/160 (21%), Positives = 72/160 (45%), Gaps = 6/160 (3%)
Query: 163 APSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEM 222
P+ + V+ ++ ++ +PD L L + G+S+ A++ +A + L++E+
Sbjct: 264 YPASYYWERVENAKNEVEEKFPDFLRDLAEYWKGGLSMTVAIQTLAT---SEYGALNDEV 320
Query: 223 LLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSE 282
+LS+ + F +R V+ A + ++DR G I D L +++R
Sbjct: 321 KKMSDQLSWGIKFSDVIKQFADRVGTPLVQRAIALIAEADRAGGKISDILVTAANDSREL 380
Query: 283 RLMEAEKK---AASLGPKLTVPMIIFFLPVLILVIIGPAI 319
+ +E E+K + + T + + V + V+ PAI
Sbjct: 381 KFLEGERKRAIGSYIAVIWTSYFVFLGVIVTLAVVFIPAI 420
>gi|320009994|gb|ADW04844.1| Type II secretion system F domain protein [Streptomyces
flavogriseus ATCC 33331]
Length = 270
Score = 81.8 bits (201), Expect = 1e-13, Method: Composition-based stats.
Identities = 34/149 (22%), Positives = 60/149 (40%), Gaps = 6/149 (4%)
Query: 179 IKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVA 238
I R P DLL C+ +G +A V E + G P+ E + T A + A
Sbjct: 125 IARQLPITADLLASCLSAGAGPREAAEAVGESVAG---PVGERLARTAAVILLGGEPDEA 181
Query: 239 FENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKL 298
+ F + + + ++ G + + L E R+ER A +A G +
Sbjct: 182 WRRFGE---LPGAAPLARCMARASSTGAPAAEPVSGLADEIRAERASAAVARAQRAGVLI 238
Query: 299 TVPMIIFFLPVLILVIIGPAILSIIDTMK 327
T P+ + FLP + V + P ++ + +
Sbjct: 239 TAPVGLCFLPAFLAVGVAPVVIGLATGLS 267
>gi|296133932|ref|YP_003641179.1| Type II secretion system F domain protein [Thermincola sp. JR]
gi|296032510|gb|ADG83278.1| Type II secretion system F domain protein [Thermincola potens JR]
Length = 278
Score = 81.8 bits (201), Expect = 1e-13, Method: Composition-based stats.
Identities = 30/214 (14%), Positives = 84/214 (39%), Gaps = 25/214 (11%)
Query: 121 LVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIK 180
++ I+ ++G+I+ + + GF P + +L+ KR++ ++
Sbjct: 50 IIAAIVLFVIGLIFFSN------------LIIAFIFSLGGFFYPKYKVQDLITKRKAELQ 97
Query: 181 RAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVP----LSEEMLLTIAELSFLPNRQ 236
+ DAL L + G S++ A + D+ + +E ++ +
Sbjct: 98 LQFKDALYSLTSSLGVGRSLESAFKTALNDLRVLYPDENTYIIKEFGYICRKIELNEPVE 157
Query: 237 VAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLR----VLVSETRSERLMEAEKKAA 292
A +F R+ ++ ++N + ++ R G ++ ++ +L + + +E
Sbjct: 158 TALLDFAERSGLEDIKNFAEVMVICKRTGGNLVQVVKNTSAILSDKIEISQEIELLLTKQ 217
Query: 293 SLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
K I+ +P++ + ++ +D++
Sbjct: 218 KYEQK-----ILNIMPIVFIGLVKFGGSGYMDSL 246
>gi|325964117|ref|YP_004242023.1| Flp pilus assembly protein TadB [Arthrobacter phenanthrenivorans
Sphe3]
gi|323470204|gb|ADX73889.1| Flp pilus assembly protein TadB [Arthrobacter phenanthrenivorans
Sphe3]
Length = 309
Score = 81.8 bits (201), Expect = 1e-13, Method: Composition-based stats.
Identities = 37/195 (18%), Positives = 83/195 (42%), Gaps = 6/195 (3%)
Query: 122 VVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKR 181
+ P F + +I F +G +L G V ++ L +R++ +
Sbjct: 79 MAPADFTVAVVIASFLAGAFTALLTHPVLG--LLAGAATPFLAKVVLAILRDRRRAKFEG 136
Query: 182 AWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFEN 241
D + +L+ + G S+ +++ A++ VP SEE+L + E + ++AFE+
Sbjct: 137 QLTDTIQMLIGGLRVGHSVLRSVEAAAQE---ADVPTSEELLRIVNETRIGKDSRLAFED 193
Query: 242 FYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVP 301
R + R +QA+ + G + + L + R ++ + ++ S K++
Sbjct: 194 VAERMDSEDFRWISQAIQINREVGGDLAEVLEQVAGTIRERSEIKGQIRSLSAEGKMSA- 252
Query: 302 MIIFFLPVLILVIIG 316
++ +PV + I+
Sbjct: 253 YVLMAMPVGVAFILA 267
>gi|258405284|ref|YP_003198026.1| Type II secretion system F domain-containing protein
[Desulfohalobium retbaense DSM 5692]
gi|257797511|gb|ACV68448.1| Type II secretion system F domain protein [Desulfohalobium
retbaense DSM 5692]
Length = 323
Score = 81.8 bits (201), Expect = 1e-13, Method: Composition-based stats.
Identities = 42/258 (16%), Positives = 97/258 (37%), Gaps = 4/258 (1%)
Query: 58 QQITSLQKDSASSRLRT-RDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNIL 116
+ I + + +LR + L + + + K + + I++ + ++ +L
Sbjct: 26 RTIKNPDRSQIRKKLRKVTYNPKLDDAPQDIERKIVFSEIKILDAILRRISITDRLHRLL 85
Query: 117 LVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQ 176
P+ F I+ + +L F V + +G +G P ++ KR
Sbjct: 86 YQANAQYPVGFYIILSPLLGLALVMLLEFFGYAVYVSLPVGLLGALTPFFYLKRKKLKRM 145
Query: 177 SSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQ 236
P+ LDLL +++G + ++ AE+ G PL E + + E++F
Sbjct: 146 RKFMAQLPEGLDLLARSLKAGHAFTTGMKLAAEEFGD---PLGPEFDVALDEINFGVPVP 202
Query: 237 VAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGP 296
A R + A+I G ++ + + + + R + KA +
Sbjct: 203 DALRKMTYRVDCPDLNFFVVAVIMQRETGGNLAEIIESIATLIRERFKFFGKVKALAAEG 262
Query: 297 KLTVPMIIFFLPVLILVI 314
L++ ++I ++ ++
Sbjct: 263 VLSMWVLIGLPFAIVGIL 280
>gi|220922535|ref|YP_002497837.1| type II secretion system protein [Methylobacterium nodulans ORS
2060]
gi|219947142|gb|ACL57534.1| type II secretion system protein [Methylobacterium nodulans ORS
2060]
Length = 314
Score = 81.8 bits (201), Expect = 1e-13, Method: Composition-based stats.
Identities = 29/185 (15%), Positives = 68/185 (36%), Gaps = 7/185 (3%)
Query: 131 GIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLL 190
+ L + + +L G ++ R ++ P+ L+++
Sbjct: 94 AFALCWAGSYALVRSVPVGMLLALLGASTGGIGTMYYLRRR---RVAAFGEQLPELLEIM 150
Query: 191 LICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDC 250
+ + +G + A A+ + P E+ +T E+ + + A N Y R +
Sbjct: 151 VRSLRAGHPLVVAFTLAAKQMPD---PAGSEIGITADEIGYGRDVGAALYNLYRRVGFED 207
Query: 251 VRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVL 310
+R A+ + G ++ + L L + R + +A S +L+ + + P L
Sbjct: 208 LRFFATAVTIQAQTGGNLAEILARLATLLRERARLRQRVRALSAEGRLSA-LALSLFPFL 266
Query: 311 ILVII 315
+ +I
Sbjct: 267 LAGLI 271
>gi|257790307|ref|YP_003180913.1| type II secretion system protein [Eggerthella lenta DSM 2243]
gi|325830125|ref|ZP_08163582.1| type II secretion system protein F domain protein [Eggerthella sp.
HGA1]
gi|257474204|gb|ACV54524.1| type II secretion system protein [Eggerthella lenta DSM 2243]
gi|325487592|gb|EGC90030.1| type II secretion system protein F domain protein [Eggerthella sp.
HGA1]
Length = 312
Score = 81.5 bits (200), Expect = 1e-13, Method: Composition-based stats.
Identities = 42/282 (14%), Positives = 90/282 (31%), Gaps = 30/282 (10%)
Query: 44 RMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVN--- 100
R + RE LRK ++ + R L + L+ + L ++
Sbjct: 30 RRRDATARRERLRKAADVRDAQEGFDAGSR------LVRYATALSQRIALGATEALSRRL 83
Query: 101 -----------KLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLR 149
+ + AG S + + + G + L +
Sbjct: 84 RLSRARAWFCARAKRAGLEQAVSPEGFCEASMRLACAGGLAGALVGSVLSTELAVLGAVA 143
Query: 150 VGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAE 209
A P + ++R ++ + L+++ + + SG+S D+
Sbjct: 144 GVAGGAAAM-----PRA-VKRAQRERADGLESDLSEMLEVVALGLRSGLSFDRGFALYGS 197
Query: 210 DIGGQSVPLSEEMLLTIAELSFL-PNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSI 268
L+ + S NR+ A + + +++S R+G+S+
Sbjct: 198 HF---DSDLARACVGAQHAWSLGLTNREDALRDLAASYDSPLFARVVENMVRSLRFGSSL 254
Query: 269 GDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVL 310
+ L +E R+ + E++ A K+ VP LP +
Sbjct: 255 AEGLESAAAEARAVHRAQVEERVAKAPVKMMVPTGTLILPAM 296
>gi|169235695|ref|YP_001688895.1| hypothetical protein OE2212R [Halobacterium salinarum R1]
gi|167726761|emb|CAP13547.1| conserved hypothetical protein [Halobacterium salinarum R1]
Length = 692
Score = 81.5 bits (200), Expect = 2e-13, Method: Composition-based stats.
Identities = 41/223 (18%), Positives = 84/223 (37%), Gaps = 10/223 (4%)
Query: 97 NIVNKLRAAGFRSEYSLNILL-----VVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVG 151
I +LR +R L ++L + + PI + LG W + P
Sbjct: 382 AISERLRPVLYRLRNPLTVVLETPTLLFWVSCPIAAVYLGSQWWAPLSTGVFAPAAYDDA 441
Query: 152 AVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDI 211
V +V + ++R+ +I+ PD LD E+G+ A+ +
Sbjct: 442 LVHATVFVVGTFAVAY--ETARRRRKAIEAEVPDFLDRFASTNEAGM---AAVESFGRTV 496
Query: 212 GGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDS 271
G L++E+ T A++ + + A F +R V + ++G
Sbjct: 497 DGDLGALTQELERTWADIQWGARIEHALTRFRDRVNTPAVSRVVALTTNAMAASGNLGPV 556
Query: 272 LRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVI 314
LR+ +E + R +E +++ L + + + F +I+ +
Sbjct: 557 LRIAANEATASRRLERDRRNELLTYVVVIYVSFFVFIAIIVAL 599
Score = 39.5 bits (91), Expect = 0.81, Method: Composition-based stats.
Identities = 33/201 (16%), Positives = 67/201 (33%), Gaps = 4/201 (1%)
Query: 120 RLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSI 179
+ P+ L + + F L ++ Y + A + +R I
Sbjct: 95 QFPGPVRGLFVDSVAAFSPGVLFGAFVLSGATVGVVAAYGTYTARWLRPRYAAGERARRI 154
Query: 180 KRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAF 239
+ + + SG+ + + LR +A + E + ++ + A
Sbjct: 155 DASMERTVAFMYALSRSGMPLAEVLRILARNQPVYGAAAEEMAVAVTDIDNYGADIITAL 214
Query: 240 ENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRV----LVSETRSERLMEAEKKAASLG 295
E +RT D + T+ L + G+ + L+ E + + E A
Sbjct: 215 ERVGSRTPSDDLAEFTENLGSILQSGSDLPAFLKQEYEYYAEEAEATQSQFLELLATLAE 274
Query: 296 PKLTVPMIIFFLPVLILVIIG 316
+TV + + ILV+IG
Sbjct: 275 AYVTVLVAGPLFLITILVVIG 295
>gi|86159246|ref|YP_466031.1| type II secretion system protein [Anaeromyxobacter dehalogenans
2CP-C]
gi|85775757|gb|ABC82594.1| type II secretion system protein [Anaeromyxobacter dehalogenans
2CP-C]
Length = 320
Score = 81.5 bits (200), Expect = 2e-13, Method: Composition-based stats.
Identities = 41/271 (15%), Positives = 97/271 (35%), Gaps = 19/271 (7%)
Query: 46 KSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAA 105
+ +A R ++++ ++ + SA R + + V + L+ + + L A
Sbjct: 25 RYLADRRSAELRRRLHTIGRGSALDADLLRRGRLAKGPVLQEALQHVPGARRLERLLEQA 84
Query: 106 GFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPS 165
S +++ L + L + +LG+ G V + G P
Sbjct: 85 --DSSWTVARLGALTLAGGAVAALLGVSLASGG------------LGVAGLAIGGAALPI 130
Query: 166 VWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLT 225
+ + + KR + + P+ALD++ + +G ++ A + VA ++ P+ E
Sbjct: 131 LGVLSARAKRSAKLSEQLPEALDMMARSLRAGHAVTSAFQVVASEM---PEPICVEFARA 187
Query: 226 IAELSFLPNRQVAFENFYNRT-QMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERL 284
E + A R ++ + + G ++ + L + R
Sbjct: 188 YEEQRLGLTLERAVVQMSERCPGNGDMKIFAVSAVIQRETGGNLAEILDQIGETIRQRYR 247
Query: 285 MEAEKKAASLGPKLTVPMIIFFLPVLILVII 315
+ +A + + + I+ LP + V +
Sbjct: 248 FYGKLRALTGEGRASAV-ILGALPFAVAVAL 277
>gi|84489955|ref|YP_448187.1| type II secretion protein F [Methanosphaera stadtmanae DSM 3091]
gi|84373274|gb|ABC57544.1| predicted type II secretion protein F [Methanosphaera stadtmanae
DSM 3091]
Length = 277
Score = 81.5 bits (200), Expect = 2e-13, Method: Composition-based stats.
Identities = 33/149 (22%), Positives = 68/149 (45%), Gaps = 11/149 (7%)
Query: 179 IKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVA 238
I + P L L I +++GI + A+ V+ G LS+E +T+ E+ + N A
Sbjct: 101 ILKVIPYVLRELSIELKAGIGLFDAIEEVSN---GNYGQLSKEFKITLNEIKYGTNYIEA 157
Query: 239 FENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKL 298
FEN R + + + ++ G ++ D+L +L +E ++ ++ + L +
Sbjct: 158 FENLSKRINLPIMEKIVSHMNRTIINGGNLADTLNILANENSRNMQIKYKEYSEKLNSLM 217
Query: 299 --------TVPMIIFFLPVLILVIIGPAI 319
+P+I+F + + +IGP +
Sbjct: 218 ILYMFTTVVIPVILFIMIIAATTVIGPIV 246
>gi|325108940|ref|YP_004270008.1| type II secretion system F domain protein [Planctomyces
brasiliensis DSM 5305]
gi|324969208|gb|ADY59986.1| Type II secretion system F domain protein [Planctomyces
brasiliensis DSM 5305]
Length = 323
Score = 81.1 bits (199), Expect = 2e-13, Method: Composition-based stats.
Identities = 50/296 (16%), Positives = 112/296 (37%), Gaps = 28/296 (9%)
Query: 32 VIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKA 91
V+ G ++E R++ + ++ +++ L+++ + R LNL
Sbjct: 24 VMEDFGPSKVEDRLQMLTNKKGAEAEEERKILKREMLKEGVGGMSQAFNRFASGSLNLPR 83
Query: 92 ILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVG 151
+ S + + ++ L I ++LGII Q
Sbjct: 84 FFEQAD-----------SPIGIELFALISLGCAGIGVVLGIIA------------QAPPP 120
Query: 152 AVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDI 211
+ G P +W+S ++R S PDAL+L+ + SG S+ L+ V +++
Sbjct: 121 MYPVCGLCTAALPFMWLSFRRKRRFSRFASQLPDALELVARALRSGHSLASGLQVVVQEM 180
Query: 212 GGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDS 271
P+S E + E + A +N ++R + A+ + G + +
Sbjct: 181 PD---PISREFGMAYEEQNLGVPIDQALKNVFHRVPNLDFKFFATAVAIQRQSGGDLAEI 237
Query: 272 LRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVI--IGPAILSIIDT 325
L + R + + +A + +++ +++ VL V+ + P + ++ T
Sbjct: 238 LDKIGHIIRERFRIMGQVQALTGEGRISGIVLMALPIVLFFVMYYLNPEYMMLLFT 293
>gi|260771471|ref|ZP_05880396.1| flp pilus assembly protein TadB [Vibrio furnissii CIP 102972]
gi|260613597|gb|EEX38791.1| flp pilus assembly protein TadB [Vibrio furnissii CIP 102972]
Length = 321
Score = 81.1 bits (199), Expect = 2e-13, Method: Composition-based stats.
Identities = 36/196 (18%), Positives = 83/196 (42%), Gaps = 6/196 (3%)
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
L + + G LL Q+ + + +V C + + + R S + PDAL
Sbjct: 96 LGVTTVLSLGLGLLLLILGQVWYLCLASVAFVWVCL-HMTLQKKISDRLSKFEEQLPDAL 154
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQ 247
D++ +++G + Q+ V ++ P+ E T L++ + ++A +RT
Sbjct: 155 DIIRRMLQAGQPLTQSFNEVGNEM---PAPIGVEFKNTFNLLNYGYDLRLAIMQMADRTP 211
Query: 248 MDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFL 307
+ + A++ G ++ ++L + R+ + + K S +++ +++
Sbjct: 212 TVSMLAFSSAVLLQKETGGNLSENLDKVSKVLRARFKLARKIKTISAESRMSAWILVLSP 271
Query: 308 PVLILV--IIGPAILS 321
VL +V +I P +S
Sbjct: 272 FVLFIVMSLIHPGYVS 287
>gi|260776711|ref|ZP_05885606.1| flp pilus assembly protein TadB [Vibrio coralliilyticus ATCC
BAA-450]
gi|260607934|gb|EEX34199.1| flp pilus assembly protein TadB [Vibrio coralliilyticus ATCC
BAA-450]
Length = 322
Score = 81.1 bits (199), Expect = 2e-13, Method: Composition-based stats.
Identities = 54/297 (18%), Positives = 118/297 (39%), Gaps = 27/297 (9%)
Query: 18 ITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDS 77
I ++ + A+++P+ GS K + R ++ S + A S L+
Sbjct: 10 ILLFFAVVFISQALILPAAGSKAKHKELSE--------RLKESQSKLDEEALSLLQEHYL 61
Query: 78 KSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFG 137
KSL +KL V ++ + +G+ + L L V I + G +
Sbjct: 62 KSLTPLDRKL--VRFEVFSSLKKMIELSGY------DWSLTQTLTVTSILSVCGFFIVLL 113
Query: 138 YDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESG 197
+ + + V + + W+S + R S+ + P+ALD++ +++G
Sbjct: 114 ISQPVYVALAVVVAIWAFLYF--------WLSKKISDRLSAFEGQLPEALDIMRRMLQAG 165
Query: 198 ISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQA 257
+ QA V E++ P+ E T L++ + ++A RT + + A
Sbjct: 166 QPVTQAFSEVGEEM---PAPIGVEFKNTFNLLNYGYDMRMAIMQMAERTPTVSMLAFSSA 222
Query: 258 LIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVI 314
++ G ++ ++L + R+ ++ + K S +L+ +++ VL L +
Sbjct: 223 VLLQKETGGNLSENLEKVSRVLRARFKLQRKIKTLSAESRLSAWILVLSPFVLFLFL 279
>gi|14521587|ref|NP_127063.1| hypothetical protein PAB1459 [Pyrococcus abyssi GE5]
gi|5458806|emb|CAB50293.1| Bacterial type II secretion system protein F domain, putative
[Pyrococcus abyssi GE5]
Length = 308
Score = 81.1 bits (199), Expect = 2e-13, Method: Composition-based stats.
Identities = 42/215 (19%), Positives = 89/215 (41%), Gaps = 17/215 (7%)
Query: 102 LRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGF 161
L +AG ++ + + + +++ +I + I L L ++GF
Sbjct: 34 LYSAGI--DFKASEYITISIIMGVIGGAVAFILFGTLSSAL---------IAFLGVFLGF 82
Query: 162 CAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEE 221
V+ + + KR +++A PDA L + +G+S +AL +A + L+ E
Sbjct: 83 LY--VYPNFRIAKRIEEMEKALPDAFFYLAGSLRAGVSFSEALEELAT---AKFGALTAE 137
Query: 222 MLLTIAELSFLPNRQVAFENFYNRT-QMDCVRNATQALIQSDRYGTSIGDSLRVLVSETR 280
T+AE+ A F R + V + +I++ G + D L + ++ R
Sbjct: 138 FRRTVAEMKRGRPTVDALRAFALRNKKSPIVYRSMMIVIEALERGAPMADVLVSVGNDVR 197
Query: 281 SERLMEAEKKAASLGPKLTVPMIIFFLPVLILVII 315
++ E+KA++ + F+ +I+ I+
Sbjct: 198 EILRIKKERKASTGMQMMFFLTSGGFVGPMIVAIV 232
>gi|27365113|ref|NP_760641.1| Flp pilus assembly protein TadB [Vibrio vulnificus CMCP6]
gi|37680836|ref|NP_935445.1| Flp pilus assembly protein TadB [Vibrio vulnificus YJ016]
gi|320155496|ref|YP_004187875.1| flp pilus assembly protein TadB [Vibrio vulnificus MO6-24/O]
gi|27361259|gb|AAO10168.1| Flp pilus assembly protein TadB [Vibrio vulnificus CMCP6]
gi|37199585|dbj|BAC95416.1| Flp pilus assembly protein TadB [Vibrio vulnificus YJ016]
gi|319930808|gb|ADV85672.1| flp pilus assembly protein TadB [Vibrio vulnificus MO6-24/O]
Length = 321
Score = 81.1 bits (199), Expect = 2e-13, Method: Composition-based stats.
Identities = 28/165 (16%), Positives = 68/165 (41%), Gaps = 3/165 (1%)
Query: 152 AVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDI 211
+ G + A ++ + R + + PDALD++ +++G + QA V ++
Sbjct: 119 LAVAGGSAIWFALQFFLQKRITDRLNRFEEQLPDALDIIRRMLQAGQPVTQAFNEVGNEM 178
Query: 212 GGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDS 271
P+ E T L++ + ++A RT + + A++ G ++ ++
Sbjct: 179 A---PPIGIEFKNTFNLLNYGYDMRLAIMQMAERTPTVSMLAFSSAVLLQKETGGNLSEN 235
Query: 272 LRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIG 316
L + R + + K S +L+ +++ VL + ++
Sbjct: 236 LEKVGKVLRQRFKLTRKIKTISAESRLSAWILVLSPFVLFVGLMF 280
>gi|50119738|ref|YP_048905.1| putative type IV pilus protein [Pectobacterium atrosepticum
SCRI1043]
gi|49610264|emb|CAG73707.1| putative type IV pilus protein [Pectobacterium atrosepticum
SCRI1043]
Length = 326
Score = 81.1 bits (199), Expect = 2e-13, Method: Composition-based stats.
Identities = 31/198 (15%), Positives = 73/198 (36%), Gaps = 3/198 (1%)
Query: 111 YSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISN 170
++ + + + L LG + + L + +I + + +
Sbjct: 83 WAQMTFIGWKKNLLQRSLSLGAVSLILGMVLGQRTLLPLTMGLIFTLLLFVSIGMMLFRS 142
Query: 171 LVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELS 230
+QK +++ + P+A+D + +G+ + VAE + G PL+ E L
Sbjct: 143 TLQKHLKALRESLPEAIDAITRSCRAGVPVANTFSIVAEHLAG---PLANEFKTIDHWLK 199
Query: 231 FLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKK 290
+ + R M R LI + G +G++L L + R R ++ + +
Sbjct: 200 LGIPLRQVIQASATRVPMAEYRFFVVILIINQEAGGRLGETLERLSATLRDRRELQLKVQ 259
Query: 291 AASLGPKLTVPMIIFFLP 308
+ + + + ++ P
Sbjct: 260 SKTSEARASAKIVAMLFP 277
>gi|297192378|ref|ZP_06909776.1| integral membrane protein [Streptomyces pristinaespiralis ATCC
25486]
gi|197723021|gb|EDY66929.1| integral membrane protein [Streptomyces pristinaespiralis ATCC
25486]
Length = 312
Score = 80.7 bits (198), Expect = 3e-13, Method: Composition-based stats.
Identities = 33/191 (17%), Positives = 72/191 (37%), Gaps = 8/191 (4%)
Query: 126 IFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPD 185
++++ ++ ++ + PF +L +G + +++ KR + P+
Sbjct: 89 VYVVAALLALYFVVGSVFAPFF-----GLLAVLIGVWGANGFLNWQRAKRTEAFISQLPE 143
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
+L ++G+++ A+ E++ + EE+ +L+ + A + R
Sbjct: 144 LTRVLANATQAGLALRTAIGMAVEELDDPAR---EELRRVADQLALGRSLDDALGDLVER 200
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
+ LI S+R G +I SLR L + E K+T +
Sbjct: 201 LPSRELTVLVSTLILSNRAGGTIVTSLRNLTETLEERKETRREVTTLLSQVKVTAVAVPV 260
Query: 306 FLPVLILVIIG 316
+LVI G
Sbjct: 261 LGLGFLLVING 271
>gi|288956973|ref|YP_003447314.1| type II secretion system [Azospirillum sp. B510]
gi|288909281|dbj|BAI70770.1| type II secretion system [Azospirillum sp. B510]
Length = 319
Score = 80.7 bits (198), Expect = 3e-13, Method: Composition-based stats.
Identities = 27/152 (17%), Positives = 59/152 (38%), Gaps = 3/152 (1%)
Query: 152 AVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDI 211
A+ + VG A + L +R PDA+DL++ +G+ + +A+ +
Sbjct: 117 ALAIAVLVGLGAGRQILGMLTHRRTIRFLDRLPDAIDLVVRASRAGVPVSEAIIAAGRET 176
Query: 212 GGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDS 271
P+ E ++S + + A R ++ AL+ G + ++
Sbjct: 177 EE---PVRSEFRRVADQVSIGVDLKDALRQSSARVRLPDFDFFVVALVVQRETGGQLAET 233
Query: 272 LRVLVSETRSERLMEAEKKAASLGPKLTVPMI 303
L L R + M + KA + +++ ++
Sbjct: 234 LGNLSDILRKRKDMRLKVKALTAEGRMSANIV 265
>gi|227326305|ref|ZP_03830329.1| putative type IV pilus protein [Pectobacterium carotovorum subsp.
carotovorum WPP14]
Length = 326
Score = 80.7 bits (198), Expect = 3e-13, Method: Composition-based stats.
Identities = 30/198 (15%), Positives = 72/198 (36%), Gaps = 3/198 (1%)
Query: 111 YSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISN 170
++ + + + L L + + L + +I + + +
Sbjct: 83 WAQMTFIGWKKNLLQRSLALAAVSLILGMILGQRTLLPLTMGLIFTLVLFISIGMLLFRS 142
Query: 171 LVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELS 230
+QK +++ + P+A+D + +G+ + VAE + G PL+ E L
Sbjct: 143 TLQKHLKALRESLPEAIDAITRSCRAGVPVANTFSIVAEHLTG---PLANEFKTIDHWLR 199
Query: 231 FLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKK 290
+ + R M R LI + G +G++L L + R R ++ + +
Sbjct: 200 LGIPLRQVIQASATRVPMSEYRFFVVILIINQEAGGRLGETLERLSATLRERRELQLKVQ 259
Query: 291 AASLGPKLTVPMIIFFLP 308
+ + + + ++ P
Sbjct: 260 SKTSEARASAKIVAALFP 277
>gi|253687072|ref|YP_003016262.1| type II secretion system protein [Pectobacterium carotovorum subsp.
carotovorum PC1]
gi|251753650|gb|ACT11726.1| type II secretion system protein [Pectobacterium carotovorum subsp.
carotovorum PC1]
Length = 326
Score = 80.7 bits (198), Expect = 3e-13, Method: Composition-based stats.
Identities = 30/198 (15%), Positives = 72/198 (36%), Gaps = 3/198 (1%)
Query: 111 YSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISN 170
++ + + + L L + + L + +I + + +
Sbjct: 83 WAQMTFIGWKKNLLQRSLALAAVSLILGMILGQRTLLPLTMGLIFTLVLFVSIGMLLFRS 142
Query: 171 LVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELS 230
+QK +++ + P+A+D + +G+ + VAE + G PL+ E L
Sbjct: 143 TLQKHLKALRESLPEAIDAITRSCRAGVPVANTFSIVAEHLTG---PLANEFKTIDHWLR 199
Query: 231 FLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKK 290
+ + R M R LI + G +G++L L + R R ++ + +
Sbjct: 200 LGIPLRQVIQASATRVPMSEYRFFVVILIINQEAGGRLGETLERLSATLRERRELQLKVQ 259
Query: 291 AASLGPKLTVPMIIFFLP 308
+ + + + ++ P
Sbjct: 260 SKTSEARASAKIVAALFP 277
>gi|84387238|ref|ZP_00990259.1| Flp pilus assembly protein TadB [Vibrio splendidus 12B01]
gi|84377885|gb|EAP94747.1| Flp pilus assembly protein TadB [Vibrio splendidus 12B01]
Length = 321
Score = 80.7 bits (198), Expect = 3e-13, Method: Composition-based stats.
Identities = 50/280 (17%), Positives = 117/280 (41%), Gaps = 20/280 (7%)
Query: 22 VSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSAS-SRLRTRDSKSL 80
VS+ + + + + L A +E+ R+ + T D+ S S L+ +K L
Sbjct: 4 VSVSLALLFIAVLFISQALLLPAAGKKAKHKELSRRLKETQRNIDAESLSLLKEHYNKEL 63
Query: 81 RNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDK 140
+KL + + + L AG + +L+ L++ + ++ ++ I
Sbjct: 64 SPLDRKLIVISFFG--GLKKMLELAGM--KVALSRFLLIVSLCAVLLSLISI-------- 111
Query: 141 LLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISI 200
+ + + VGA I + + + ++ N V R + + P+ALD++ +++G +
Sbjct: 112 MTNQVWFISVGAFIFVWVIAYL----FVQNRVTYRMARFEEQLPEALDIIRRALQAGQPL 167
Query: 201 DQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQ 260
Q+ V E++ P+ E T L++ + ++A R + + A++
Sbjct: 168 VQSFNEVGEELPD---PIGVEFKNTYNLLNYGYDLRLAILQMTERVPTVSMLAFSSAVML 224
Query: 261 SDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV 300
G ++ ++L+ + R+ +E + K S +L+
Sbjct: 225 QKETGGNLSENLQKVSEVLRARFKLERKIKTLSAESRLSA 264
>gi|87312289|ref|ZP_01094387.1| secretion system protein TadB [Blastopirellula marina DSM 3645]
gi|87284993|gb|EAQ76929.1| secretion system protein TadB [Blastopirellula marina DSM 3645]
Length = 320
Score = 80.7 bits (198), Expect = 3e-13, Method: Composition-based stats.
Identities = 28/207 (13%), Positives = 75/207 (36%), Gaps = 5/207 (2%)
Query: 121 LVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIK 180
+ + + L++ + +L + + + P + + R +
Sbjct: 87 MSMSVANLVMISGGLAAAGAILPIAIGMPFYVAPITAGLLGVIPFAMVHFKRKARLAKFG 146
Query: 181 RAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFE 240
+ PDAL+L+ + +G S+ R V+E+ P+ E + + + A
Sbjct: 147 KQLPDALELISRALRAGHSLGAGFRLVSEE---SDDPIGREFAKVFEAQNLGVSLEDAIT 203
Query: 241 NFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV 300
+ R ++ A+I + G + + L + R + +A + +++
Sbjct: 204 DMTERVPNLDLKFFGTAIILQRQTGGDLAEILDKIGRLVRQRLELFGTIQALTGEGRISG 263
Query: 301 PMIIFFLPVLILVI--IGPAILSIIDT 325
+++ P L + + + P + + T
Sbjct: 264 IVLLGLPPALFVALWRLNPGYVMTLFT 290
>gi|331086801|ref|ZP_08335878.1| hypothetical protein HMPREF0987_02181 [Lachnospiraceae bacterium
9_1_43BFAA]
gi|330409967|gb|EGG89402.1| hypothetical protein HMPREF0987_02181 [Lachnospiraceae bacterium
9_1_43BFAA]
Length = 431
Score = 80.7 bits (198), Expect = 3e-13, Method: Composition-based stats.
Identities = 38/147 (25%), Positives = 73/147 (49%), Gaps = 7/147 (4%)
Query: 182 AWPDALDLLLICVESGISIDQALRRVAEDIG-----GQSVPLSEEMLLTIAELSFLPNRQ 236
+P+ L+ ++ + +G+++ A ++++ D G+ EEM T+ E+ + +
Sbjct: 284 DYPEILNKFVLFLGAGMTVKAAWQKISSDYEKGKIMGKERFAYEEMAYTLREMQAGGSEK 343
Query: 237 VAFENFYNRTQMDCVRNATQALIQSDRYGT-SIGDSLRVLVSETRSERLMEAEKKAASLG 295
+E+F R + C L Q+ + G+ + D LR+ ER A+K +G
Sbjct: 344 ECYEHFGKRCEAVCYMRFGALLSQNLKRGSKGLADLLRLEAVNAFEERKRAAKKAGEEVG 403
Query: 296 PKLTVPMIIFFLPVLILVIIGPAILSI 322
KL PM F L V+++++I PA LS+
Sbjct: 404 TKLLAPM-FFMLTVVLVIVIVPAFLSM 429
>gi|153006802|ref|YP_001381127.1| type II secretion system protein [Anaeromyxobacter sp. Fw109-5]
gi|152030375|gb|ABS28143.1| type II secretion system protein [Anaeromyxobacter sp. Fw109-5]
Length = 320
Score = 80.7 bits (198), Expect = 3e-13, Method: Composition-based stats.
Identities = 27/179 (15%), Positives = 71/179 (39%), Gaps = 5/179 (2%)
Query: 152 AVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDI 211
IL+G + AP + + + +R I P+AL+++ + +G ++ A + VA ++
Sbjct: 117 ITILLGLMVGAAPFLSVLSARSRRSQKISEQLPEALEMMARSLRAGHALTSAFQVVAGEM 176
Query: 212 GGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRT-QMDCVRNATQALIQSDRYGTSIGD 270
P+ E + E + + A + R V+ + + G ++ +
Sbjct: 177 ---PEPVCVEFARSYDEQRLGLSLEQAVLHMAERCPGNSDVKIFAVSAVIQRETGGNLAE 233
Query: 271 SLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMKDH 329
L + R + +A + + + ++ LP ++ + + + T+ ++
Sbjct: 234 ILEKISDTIRQRYRFYGKLRALTGEGRASA-WVLGLLPFIVALAVSVMNPGYLRTLAEN 291
>gi|227114880|ref|ZP_03828536.1| putative type IV pilus protein [Pectobacterium carotovorum subsp.
brasiliensis PBR1692]
Length = 326
Score = 80.7 bits (198), Expect = 3e-13, Method: Composition-based stats.
Identities = 30/198 (15%), Positives = 72/198 (36%), Gaps = 3/198 (1%)
Query: 111 YSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISN 170
++ + + + L L + + L + +I + + +
Sbjct: 83 WAQMTFIGWKKNLLQRSLSLAAVSLILGMILGQRTLLPLTMGLIFTLVLFISIGMLLFRS 142
Query: 171 LVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELS 230
+QK +++ + P+A+D + +G+ + VAE + G PL+ E L
Sbjct: 143 TLQKHLKALRESLPEAIDAITRSCRAGVPVANTFSIVAEHLTG---PLANEFKTIDHWLR 199
Query: 231 FLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKK 290
+ + R M R LI + G +G++L L + R R ++ + +
Sbjct: 200 LGIPLRQVIQASATRVPMSEYRFFVVILIINQEAGGRLGETLERLSATLRERRELQLKVQ 259
Query: 291 AASLGPKLTVPMIIFFLP 308
+ + + + ++ P
Sbjct: 260 SKTSEARASAKIVAALFP 277
>gi|225026644|ref|ZP_03715836.1| hypothetical protein EUBHAL_00895 [Eubacterium hallii DSM 3353]
gi|224956014|gb|EEG37223.1| hypothetical protein EUBHAL_00895 [Eubacterium hallii DSM 3353]
Length = 445
Score = 80.3 bits (197), Expect = 3e-13, Method: Composition-based stats.
Identities = 39/184 (21%), Positives = 85/184 (46%), Gaps = 15/184 (8%)
Query: 151 GAVILIGYVGFCAP---SVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRV 207
G +IL V P + + +K Q +R +P + LL + + +G+S A++R+
Sbjct: 262 GILILFVTVCIFIPLHNYLKLQEEGKKCQEQAERDFPVIVHLLTLYMGAGLSFFSAVKRI 321
Query: 208 AE------DIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQS 261
++ ++ E+M+ ++S +++ A +++ + + D + + LIQS
Sbjct: 322 SQNYQKQRELDDSKKYAFEKMMRMEQQMSNGVSQREACQDWGMQFRTDSYQKLSLILIQS 381
Query: 262 DRYGTSIGDSLRVLVSETRS---ERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPA 318
G+ L +E R +R+ A+K+ +L PMI+ L ++L+++ PA
Sbjct: 382 FTKGSKEAAMLME--AEEREAFHKRIDRAKKEGEEASTRLLFPMIL-LLCQVMLLVMYPA 438
Query: 319 ILSI 322
+
Sbjct: 439 LTRF 442
>gi|118581109|ref|YP_902359.1| type II secretion system protein [Pelobacter propionicus DSM 2379]
gi|118503819|gb|ABL00302.1| type II secretion system protein [Pelobacter propionicus DSM 2379]
Length = 321
Score = 80.3 bits (197), Expect = 4e-13, Method: Composition-based stats.
Identities = 50/307 (16%), Positives = 111/307 (36%), Gaps = 36/307 (11%)
Query: 14 LAVAITTAVSIFSLIYAVVIPSLG-----SGELEKRMKSVAVEREILRKQQITSLQKDSA 68
L ++F + A+ + EL++R++ ++++ + S+ +D
Sbjct: 2 LLAVFLAFFAVFVAVMAIYFWLTAVKESPAAELKRRLRRMSLD------ARYESIPEDLR 55
Query: 69 SSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFL 128
+ L+ ++ FV ++ L L GF + L+V ++ ++
Sbjct: 56 AELLK--EATPFETFVSRIPFMKRLD-----IYLDQCGF--KIQPLTFLLVIVLAVLLSF 106
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
++ I+ F V A +L+G V++SN+ +KR SS PDAL
Sbjct: 107 LVAFIF------RPSLLFAAFVAACVLVGAC------VYVSNVRKKRYSSFTEQLPDALT 154
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
++ + +G S+ A+ V + PL + A R
Sbjct: 155 MIARSLRAGHSLTSAVELVGSE---TPEPLGGLFRAAYEQQKLGLRITDALGGMLQRMDS 211
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP 308
+R + G ++ + L L + R + + + + +++ I+ LP
Sbjct: 212 LDLRFFVTVITIHAESGGNLSEILDKLAATIRERIKLRRQVQVYTAQGRMSG-YILVALP 270
Query: 309 VLILVII 315
+ +
Sbjct: 271 IFAFFFL 277
>gi|269128336|ref|YP_003301706.1| type II secretion system protein [Thermomonospora curvata DSM
43183]
gi|268313294|gb|ACY99668.1| type II secretion system protein [Thermomonospora curvata DSM
43183]
Length = 304
Score = 80.3 bits (197), Expect = 4e-13, Method: Composition-based stats.
Identities = 54/315 (17%), Positives = 109/315 (34%), Gaps = 14/315 (4%)
Query: 14 LAVAITTAVSIFSLIYAVVIPSL-GSGELEKRMKSVAVEREI-LRKQQITSLQKDSASSR 71
+ +A+ ++ +Y +V L + + R ++Q S
Sbjct: 1 MTMAMLAGATVGLGLYLLVRALFPARPGLAASLAAFDRARAQDTAERQRRVSPGMEEISG 60
Query: 72 LRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILG 131
LR R ++L F + + V ++ E S L + ++P LI
Sbjct: 61 LRARVGRALVRFYESRGWEQRSVRADLALL--------ERSYEGFLATKFLLPAAALIFM 112
Query: 132 -IIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLL 190
++ + L + +++ F P + + +R+ + LDL+
Sbjct: 113 PVLVGYAALVGLGDSLAVPAWMALIMAGFFFFLPDLQLRQEAAQRRRDFRHVVGAFLDLV 172
Query: 191 LICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDC 250
+ + G + +AL A+ G ++ E L A + A +
Sbjct: 173 AMNLAGGRGVPEALMTAAQVGDGWAMVRIRE-ALANARI-VGQTPWQALGRLGEEVNVAE 230
Query: 251 VRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVL 310
+R+ AL G I SL + RS L E E KA + + ++F
Sbjct: 231 LRDLAAALTLVADDGAKIRQSLAARAASMRSRELSELEGKAGERSQSMLIAQLLFCF-GF 289
Query: 311 ILVIIGPAILSIIDT 325
++ + PA++ I+ T
Sbjct: 290 LVFLGFPALIRILVT 304
>gi|332158911|ref|YP_004424190.1| hypothetical protein PNA2_1271 [Pyrococcus sp. NA2]
gi|331034374|gb|AEC52186.1| hypothetical protein PNA2_1271 [Pyrococcus sp. NA2]
Length = 305
Score = 80.3 bits (197), Expect = 4e-13, Method: Composition-based stats.
Identities = 43/238 (18%), Positives = 97/238 (40%), Gaps = 20/238 (8%)
Query: 79 SLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGY 138
+ ++++ K L +++ L +AG ++ + + + L + II I +
Sbjct: 10 KVTKAIERIVPKKYLKRYDLL--LYSAGI--DFKASEYIAISLALGIIGGATVFILVNSV 65
Query: 139 DKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGI 198
LL + +++ + P+ + KR ++RA PDA L + +G+
Sbjct: 66 KLLL-------ISFLVIFATFLYVYPNF----RIIKRIEEMERALPDAFFYLAGSLRAGV 114
Query: 199 SIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRT-QMDCVRNATQA 257
S +AL ++ + L+ E + T+AE+ A F R + + +
Sbjct: 115 SFSEALEELST---AKFGALTREFMRTVAEMKRGRPTVDALRAFALRNKRSPIIYRSMMI 171
Query: 258 LIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVII 315
+I++ G + D L + ++ R ++ E+KA S G ++ + +V +
Sbjct: 172 IIEALERGAPMADVLVAVGNDVREILRIKNERKA-STGMQMMFFLTSGGFVGPFIVAV 228
>gi|284991839|ref|YP_003410393.1| Type II secretion system F domain-containing protein
[Geodermatophilus obscurus DSM 43160]
gi|284065084|gb|ADB76022.1| Type II secretion system F domain protein [Geodermatophilus
obscurus DSM 43160]
Length = 310
Score = 80.3 bits (197), Expect = 4e-13, Method: Composition-based stats.
Identities = 34/192 (17%), Positives = 72/192 (37%), Gaps = 6/192 (3%)
Query: 123 VPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRA 182
+P + L++G+ + + L +G V + +RQ++
Sbjct: 82 LPDVVLLVGLATVVLGALGSLFGGLLLAVVFAAAAPLGT---KVLLGLKRGRRQAAFADQ 138
Query: 183 WPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENF 242
D+L L+ + +G S+ +A+ V+ + P SEE + E + A +
Sbjct: 139 LDDSLQLMASSLRAGHSLLRAVDAVSTEAAA---PTSEEFARIVNETRVGRDLGDALDEV 195
Query: 243 YNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPM 302
R D R QA+ G ++ + L + R + + KA S KL+ +
Sbjct: 196 AERMDSDDFRWVAQAIGIHREVGGNLAEVLDTVGHTIRERNAIRRQVKALSAEGKLSAVV 255
Query: 303 IIFFLPVLILVI 314
++ ++ +
Sbjct: 256 LMALPFGIVGFL 267
>gi|291303312|ref|YP_003514590.1| type II secretion system protein [Stackebrandtia nassauensis DSM
44728]
gi|290572532|gb|ADD45497.1| type II secretion system protein [Stackebrandtia nassauensis DSM
44728]
Length = 220
Score = 80.3 bits (197), Expect = 4e-13, Method: Composition-based stats.
Identities = 37/146 (25%), Positives = 61/146 (41%), Gaps = 6/146 (4%)
Query: 183 WPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENF 242
P ALD+ C+ SG +D+AL AE + L+ L+ A F
Sbjct: 79 LPFALDVFAACLHSGAPLDRALSTCAE---AVNPALANRFRRAARSLTLGATLAEALTEF 135
Query: 243 YNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPM 302
+ + Q + +S G + DSL +L E R +R A A G + +P+
Sbjct: 136 DS---LADGHRLVQTIGRSADTGARLADSLHLLAKELRFDREQAALSHAHRAGVWMVLPL 192
Query: 303 IIFFLPVLILVIIGPAILSIIDTMKD 328
+ FLP I + P ++S +D + +
Sbjct: 193 CLCFLPAFIAAGLLPVVISSLDGILN 218
>gi|148642531|ref|YP_001273044.1| type II secretion system protein F, GspF [Methanobrevibacter
smithii ATCC 35061]
gi|148551548|gb|ABQ86676.1| type II secretion system protein F, GspF [Methanobrevibacter
smithii ATCC 35061]
Length = 306
Score = 79.9 bits (196), Expect = 4e-13, Method: Composition-based stats.
Identities = 44/210 (20%), Positives = 90/210 (42%), Gaps = 15/210 (7%)
Query: 116 LLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKR 175
++ + + +IF IL + G + L + +LI + F A V+I +KR
Sbjct: 36 IVASKFLAILIFFILFADIVIGIFIVFFKISDLSLFLPLLI--IPFVATYVFIKQ--EKR 91
Query: 176 QSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNR 235
+ I+++ PD L L ++ G+S + A+ +++ G PL +E IAE+ N
Sbjct: 92 AAEIEKSAPDFLRQLSAMLKVGLSFENAMEDMSKYGEG---PLYDETRRAIAEIKVGRNF 148
Query: 236 QVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLG 295
A+ R + + ++ S + G+SI + + + + R ++ E+K
Sbjct: 149 DDAWMAMAQRLKSKELERIFTIILGSRKSGSSIANVIFDVSNNLRDMLALKRERK----- 203
Query: 296 PKLTVPMIIFFLPVLILVIIGPAILSIIDT 325
+ M+ ++ VI P L ++
Sbjct: 204 ---SSVMMAVMFLIISAVIASPFALGMVSV 230
>gi|116671480|ref|YP_832413.1| type II secretion system protein [Arthrobacter sp. FB24]
gi|116611589|gb|ABK04313.1| type II secretion system protein [Arthrobacter sp. FB24]
Length = 310
Score = 79.9 bits (196), Expect = 5e-13, Method: Composition-based stats.
Identities = 56/274 (20%), Positives = 107/274 (39%), Gaps = 27/274 (9%)
Query: 55 LRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLN 114
L +++ S +RL +L F+ NL+ L AG R +
Sbjct: 31 LSRRRPYDSDPPSRLTRLANITVGTLDRFLAARNLRLYN-----RETLETAGVRLSQAE- 84
Query: 115 ILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQK 174
+V+ + I+ ++G++ + + VIL +VG + + L K
Sbjct: 85 -FIVLVMAGAIVGALVGLVIGVPV---------VSILLVILAPFVG----HLVLGFLAGK 130
Query: 175 RQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPN 234
R++ + D L LL + +G SI +A+ A + P SEEM I E S +
Sbjct: 131 RRARFDQQLGDTLQLLAGGLRAGHSILRAIDAAAAESQS---PTSEEMRRVITETSLGRD 187
Query: 235 RQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASL 294
+ + R + + QA+ + G ++ + L + R ++ KA +
Sbjct: 188 LLASLTDTSERMKNEDFVWIAQAIQINREVGGNLAEVLDQVNETIRERSEIKGHIKALAA 247
Query: 295 GPKLTVPMIIFFLP---VLILVIIGPAILSIIDT 325
K + I+ +P VL+L+ + P + + T
Sbjct: 248 EGKFSA-YILIAMPIGIVLMLMAVNPGYMDAMFT 280
>gi|160878195|ref|YP_001557163.1| hypothetical protein Cphy_0034 [Clostridium phytofermentans ISDg]
gi|160426861|gb|ABX40424.1| hypothetical protein Cphy_0034 [Clostridium phytofermentans ISDg]
Length = 485
Score = 79.9 bits (196), Expect = 5e-13, Method: Composition-based stats.
Identities = 33/202 (16%), Positives = 82/202 (40%), Gaps = 26/202 (12%)
Query: 145 PFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQAL 204
L + ++++ + F Q++Q + +P+ + + + +G++ A
Sbjct: 284 SIPLLLIGILVMVCIPFFI-EQKKREREQQKQEQLLLDYPEIMMKYTLLLSAGMTTYGAW 342
Query: 205 RRVAEDIGGQ-SVPLS----------------------EEMLLTIAELSFLPNRQVAFEN 241
R+ +D + L EEM++T E+ + VA+E
Sbjct: 343 ERIVKDYNTRRERELGGTRRNKKKLSKSKSMKSMRYAYEEMIITKNEIDLGVSESVAYER 402
Query: 242 FYNRTQMDCVRNATQALIQSDRYGT-SIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV 300
F R ++ + ++Q+ + G + L + +R +A++ K+ +
Sbjct: 403 FGRRCKLLSYLRFSTIIVQNMKKGNKGMIPMLEAESVQALLDRKEQAKRLGERASTKMLM 462
Query: 301 PMIIFFLPVLILVIIGPAILSI 322
PM+ L ++I +++ PA++S+
Sbjct: 463 PMM-GMLCIVIAILMVPAMMSM 483
>gi|59713407|ref|YP_206182.1| TadB-like protein involved in pilus formation and/or protein
secretion [Vibrio fischeri ES114]
gi|59481655|gb|AAW87294.1| TadB-like protein involved in pilus formation and/or protein
secretion [Vibrio fischeri ES114]
Length = 307
Score = 79.5 bits (195), Expect = 5e-13, Method: Composition-based stats.
Identities = 41/223 (18%), Positives = 86/223 (38%), Gaps = 12/223 (5%)
Query: 93 LVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGA 152
L DE + KL + ++ L +++ + FL++ I+I L P +
Sbjct: 53 LSDETLKQKLLRFFNNTYQQVDSLANIKIPLYCAFLVVLGIYI-NKSFLQANPLMIVAIT 111
Query: 153 VILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIG 212
I G +W+ + R + ++PDAL+++ V +G I QA+ V +
Sbjct: 112 EISGLIFGV----MWLRKREKNR---FEESFPDALNMMSSAVSAGEGIMQAVVFVGRSLD 164
Query: 213 GQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSL 272
G+ + +E +L + F R + L S + G + + +
Sbjct: 165 GK---VGKEFKRMGEQLQLGESPDTVFRKSCERFPYPSFQFFIITLRTSMQRGGQLKEVM 221
Query: 273 RVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVII 315
+ L R +E +K A + + + ++ P + L ++
Sbjct: 222 KRLNRLMFGARAIEKKKLALTSEARASAKIVAAI-PFIFLFML 263
>gi|325663219|ref|ZP_08151669.1| hypothetical protein HMPREF0490_02410 [Lachnospiraceae bacterium
4_1_37FAA]
gi|325470673|gb|EGC73903.1| hypothetical protein HMPREF0490_02410 [Lachnospiraceae bacterium
4_1_37FAA]
Length = 394
Score = 79.5 bits (195), Expect = 6e-13, Method: Composition-based stats.
Identities = 38/147 (25%), Positives = 72/147 (48%), Gaps = 7/147 (4%)
Query: 182 AWPDALDLLLICVESGISIDQALRRVAEDIG-----GQSVPLSEEMLLTIAELSFLPNRQ 236
+P+ L+ ++ + +G++ A ++++ D G+ EEM T+ E+ + +
Sbjct: 247 DYPEILNKFVLFLGAGMTAKAAWQKISSDYEKGKIMGKERFAYEEMAYTLREMQAGGSEK 306
Query: 237 VAFENFYNRTQMDCVRNATQALIQSDRYGT-SIGDSLRVLVSETRSERLMEAEKKAASLG 295
+E+F R + C L Q+ + G+ + D LR+ ER A+K +G
Sbjct: 307 ECYEHFGKRCEAVCYMRFGALLSQNLKRGSKGLADLLRLEAVNAFEERKRAAKKAGEEVG 366
Query: 296 PKLTVPMIIFFLPVLILVIIGPAILSI 322
KL PM F L V+++++I PA LS+
Sbjct: 367 TKLLAPM-FFMLTVVLVIVIVPAFLSM 392
>gi|87310970|ref|ZP_01093095.1| hypothetical protein DSM3645_15370 [Blastopirellula marina DSM
3645]
gi|87286260|gb|EAQ78169.1| hypothetical protein DSM3645_15370 [Blastopirellula marina DSM
3645]
Length = 317
Score = 79.5 bits (195), Expect = 6e-13, Method: Composition-based stats.
Identities = 45/257 (17%), Positives = 92/257 (35%), Gaps = 24/257 (9%)
Query: 55 LRKQQITSLQKDSASSRLRTRDS-----KSLRNFVKKLNLKAILVDENIVNKLRAAGFRS 109
+R + L KD+ +R+R + + L N + + L +G S
Sbjct: 32 VRHRADDRL-KDAFYDEMRSRSNASPLLRELSNANAGFTFNSRSLTTRFKTWLEQSG--S 88
Query: 110 EYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWIS 169
+ + ++ L + + G + + P +G + P+ I
Sbjct: 89 QLTPRDFVLSSLCLAALG---GGGIFYVTNSFFLAP----------LGMIAGLLPAACIC 135
Query: 170 NLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAEL 229
+ +R + + P+A + + +G + A++ VA D PLSEE +
Sbjct: 136 HRRLQRTEMLTQQLPEAFSAISRALRAGQGLPTAIQMVANDF---PKPLSEEFTHYYEQQ 192
Query: 230 SFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEK 289
+VA + R + +R ALI R G ++ + L+ L R +
Sbjct: 193 HLGVANEVALRDMVRRVDVMELRIFAVALIVQQRAGGNLAELLKKLADLIRKRVKLRRRV 252
Query: 290 KAASLGPKLTVPMIIFF 306
KA + ++ ++I
Sbjct: 253 KALTGEGRMQAVVLIAM 269
>gi|220922783|ref|YP_002498085.1| type II secretion system protein [Methylobacterium nodulans ORS
2060]
gi|219947390|gb|ACL57782.1| type II secretion system protein [Methylobacterium nodulans ORS
2060]
Length = 322
Score = 79.5 bits (195), Expect = 6e-13, Method: Composition-based stats.
Identities = 44/290 (15%), Positives = 98/290 (33%), Gaps = 31/290 (10%)
Query: 40 ELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIV 99
KR +++A R + + Q + + A S +K+L K ++
Sbjct: 34 RAAKRQQAIAGRRPVAERIQAVNRRDQVAKS-------------LKELENKEKKARPSLD 80
Query: 100 NKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYV 159
+L +G F I + + +
Sbjct: 81 LRLTQSGLSITKPQ-------------FYAFSGIAAGLSAVTMLLLSGSLLLCLATAFVA 127
Query: 160 GFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLS 219
G P ++ L ++R + P+A+D+++ ++SG+ I LR +A + P+
Sbjct: 128 GLGLPQWLLAYLRKRRMARFVLELPNAMDVIVRGIKSGLPIGDCLRIIAREAPD---PVK 184
Query: 220 EEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSET 279
E + + A Y R + + + G ++ ++L L
Sbjct: 185 TEFRAIVESQAIGLPLPEAAAKLYERMPIPEANFFAIVIGIQSKSGGNLSEALGNLSRVL 244
Query: 280 RSERLMEAEKKAASLGPKLTVPMIIFFLPVLILV--IIGPAILSIIDTMK 327
R R M + A S+ + + +I + ++ + P +S++ T +
Sbjct: 245 RDRRRMADKVSAMSMEARASAAIIASLPFAVAILCYLSSPDYISLLWTTQ 294
>gi|91772317|ref|YP_565009.1| type II secretion system protein [Methanococcoides burtonii DSM
6242]
gi|91711332|gb|ABE51259.1| type II secretion system protein F domain [Methanococcoides
burtonii DSM 6242]
Length = 328
Score = 79.5 bits (195), Expect = 7e-13, Method: Composition-based stats.
Identities = 31/205 (15%), Positives = 82/205 (40%), Gaps = 13/205 (6%)
Query: 112 SLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNL 171
+ IIF+I G+ +G + V++ F P
Sbjct: 57 YPYYAMAFSGPAAIIFMIAGLYLTWGTPGIDN---------VLIFSSWIFILPPALTFYR 107
Query: 172 VQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSF 231
+ + ++ P+ L + +G+++ ++ VA+ G+ +++E+ + A LS+
Sbjct: 108 KARYINKVEEYLPNFLRDIAEMSRAGLTLPASVETVAK---GEYGEMTKEIRMMDASLSW 164
Query: 232 LPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKA 291
+ + ENF R + + + Q++R G + L + + +E E++
Sbjct: 165 GISFEDTLENFGKRMNTHLITRSVALITQANRAGGRVSFVLEAAARDASEIKTLERERRG 224
Query: 292 ASLGPKLTVPMIIFFLPVLILVIIG 316
+ + + + FF+ + +++++
Sbjct: 225 N-MAVYVVISYMSFFVFIFVILMLA 248
>gi|331092045|ref|ZP_08340876.1| hypothetical protein HMPREF9477_01519 [Lachnospiraceae bacterium
2_1_46FAA]
gi|330402246|gb|EGG81817.1| hypothetical protein HMPREF9477_01519 [Lachnospiraceae bacterium
2_1_46FAA]
Length = 403
Score = 79.5 bits (195), Expect = 7e-13, Method: Composition-based stats.
Identities = 25/132 (18%), Positives = 50/132 (37%), Gaps = 5/132 (3%)
Query: 179 IKRAWPDALDLLLICVESGISIDQALRRVA----EDIGGQSVPLSEEMLLTIAELSFLPN 234
+ +P+ + L + + SG++I A +++ + EE+ + E+
Sbjct: 254 MIIDYPEIISQLSLLIGSGMTIKNAWKKILFHYENRKKKEVRFAYEEIYCAMREMQGGMT 313
Query: 235 RQVAFENFYNRTQMDCVRNATQALIQSDRYGT-SIGDSLRVLVSETRSERLMEAEKKAAS 293
++E F R + L Q+ R G + + L E R A++
Sbjct: 314 ESESYERFGKRCGISSYMKLGTTLSQNVRKGAKGLTELLEKETKEALETRKQRAKQYGEK 373
Query: 294 LGPKLTVPMIIF 305
G KL +PM +
Sbjct: 374 AGTKLLLPMSMM 385
>gi|238917897|ref|YP_002931414.1| hypothetical protein EUBELI_01984 [Eubacterium eligens ATCC 27750]
gi|238873257|gb|ACR72967.1| Hypothetical protein EUBELI_01984 [Eubacterium eligens ATCC 27750]
Length = 417
Score = 79.2 bits (194), Expect = 8e-13, Method: Composition-based stats.
Identities = 32/152 (21%), Positives = 61/152 (40%), Gaps = 15/152 (9%)
Query: 182 AWPDALDLLLICVESGISIDQALRRVAEDIGGQS-------VPLSEEMLLTIAELSFLPN 234
+ + + L + + +G++ A ++ ED + P +EM + +
Sbjct: 268 DYSEIVSKLTLLLGAGMTTRMAWHKIVEDYNRKRQSGSIGVRPAYDEMYEADCNMQAGIS 327
Query: 235 RQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVS----ETRSERLMEAEKK 290
A+E F + L + + GTS LRVL+ E+ +R A+ K
Sbjct: 328 EAAAYERFGKKCDTREYMKLASLLQTNIKKGTS---QLRVLLEHEVNESFEKRKNIAKIK 384
Query: 291 AASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
KL PM + L V++ +I+ PA++
Sbjct: 385 GEEATTKLLFPM-LLMLGVVMAIIMIPAVMKF 415
>gi|315181053|gb|ADT87967.1| Flp pilus assembly protein TadB [Vibrio furnissii NCTC 11218]
Length = 321
Score = 79.2 bits (194), Expect = 9e-13, Method: Composition-based stats.
Identities = 36/196 (18%), Positives = 82/196 (41%), Gaps = 6/196 (3%)
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
L + + G LL Q+ + + +V C + + + R S + PDAL
Sbjct: 96 LGVTTVLSLGLGLLLLILGQVWYLCLASVAFVWVCL-HMTLQKKISDRLSKFEEQLPDAL 154
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQ 247
D++ +++G + Q+ V ++ P+ E T L++ + ++A +RT
Sbjct: 155 DIIRRMLQAGQPLTQSFNEVGNEM---PAPIGVEFKNTFNLLNYGYDLRLAIMQMADRTP 211
Query: 248 MDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFL 307
+ + A++ G ++ ++L + R+ + + K S +++ +++
Sbjct: 212 TVSMLAFSSAVLLQKETGGNLSENLDKVSKVLRARFKLARKIKTISAESRMSAWILVLSP 271
Query: 308 PVLILV--IIGPAILS 321
VL + II P +S
Sbjct: 272 FVLFIAMSIIHPGYVS 287
>gi|222445971|ref|ZP_03608486.1| hypothetical protein METSMIALI_01619 [Methanobrevibacter smithii
DSM 2375]
gi|222435536|gb|EEE42701.1| hypothetical protein METSMIALI_01619 [Methanobrevibacter smithii
DSM 2375]
Length = 306
Score = 79.2 bits (194), Expect = 9e-13, Method: Composition-based stats.
Identities = 43/210 (20%), Positives = 90/210 (42%), Gaps = 15/210 (7%)
Query: 116 LLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKR 175
++ + + +IF IL + G + L + +LI + F A V+I +KR
Sbjct: 36 IVASKFLAILIFFILFADIVIGIFIVFFKISDLSLFLPLLI--IPFVATYVFIKQ--EKR 91
Query: 176 QSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNR 235
+ I+++ PD L L ++ G+S + A+ +++ G PL +E IAE+ N
Sbjct: 92 AAEIEKSAPDFLRQLSAMLKVGLSFENAMEDMSKYGEG---PLYDETRRAIAEIKVGRNF 148
Query: 236 QVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLG 295
A+ R + + ++ S + G+SI + + + + R ++ E+K
Sbjct: 149 DDAWMAMAQRLKSKELGRIFTIILGSRKSGSSIANVIFDVSNNLRDMLALKRERK----- 203
Query: 296 PKLTVPMIIFFLPVLILVIIGPAILSIIDT 325
+ M+ ++ V+ P L ++
Sbjct: 204 ---SSVMMAVMFLIISAVVASPFALGMVSV 230
>gi|302521144|ref|ZP_07273486.1| integral membrane protein [Streptomyces sp. SPB78]
gi|318062248|ref|ZP_07980969.1| integral membrane protein [Streptomyces sp. SA3_actG]
gi|318080604|ref|ZP_07987936.1| integral membrane protein [Streptomyces sp. SA3_actF]
gi|302430039|gb|EFL01855.1| integral membrane protein [Streptomyces sp. SPB78]
Length = 312
Score = 78.8 bits (193), Expect = 1e-12, Method: Composition-based stats.
Identities = 44/319 (13%), Positives = 104/319 (32%), Gaps = 12/319 (3%)
Query: 11 ATELAVAITTAVSIFSLIYAVVIPSL--GSGELEKRMKSVAVEREILRKQQITSLQKDSA 68
++ + + +Y +V L L+ + A+ + + K
Sbjct: 2 NSQWIGPVVAGAVVGLGMYVLVRALLPGARSPLQTVARVDALRARGAYEPPVHRGGKHEE 61
Query: 69 SSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFL 128
SL + + ++ L + S L ++++ + L
Sbjct: 62 DDGRFATARASLGLRLAAFYRQQGWELRSLRADLA----VLDRSWERFLATKVLLGVAGL 117
Query: 129 ILG-IIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
+ G ++ + + V +L G + F P + I Q ++ ++R L
Sbjct: 118 VFGPAVFAIVAVLGIGRSPLIPVWLALLCGILFFFLPDLEIRRDAQDKRRDLRRVIGAYL 177
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSF-LPNRQVAFENFYNRT 246
DL+ + + G + +AL AE G + S + + + + A
Sbjct: 178 DLVAMSLAGGRGLPEALLAAAEVSDGWA---SRRIRDALQDARITGHTQWYALGRLGEEL 234
Query: 247 QMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFF 306
++ ++ + +L G + +SL R L E E A + + ++
Sbjct: 235 GIEELKELSSSLALVADDGAKVRESLASRAETMRHRELAEIEGSAGEKSQSMLIAQLLLC 294
Query: 307 LPVLILVIIGPAILSIIDT 325
++ +I PA + +
Sbjct: 295 A-GFLVFLIFPAAMRVFQM 312
>gi|313126950|ref|YP_004037220.1| archaeal flagella assembly protein j [Halogeometricum borinquense
DSM 11551]
gi|312293315|gb|ADQ67775.1| archaeal flagella assembly protein J [Halogeometricum borinquense
DSM 11551]
Length = 719
Score = 78.8 bits (193), Expect = 1e-12, Method: Composition-based stats.
Identities = 34/157 (21%), Positives = 73/157 (46%), Gaps = 7/157 (4%)
Query: 171 LVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELS 230
L ++R +I+R PD LD + E+G+++ ++L R+A+ P+SEE+ T ++
Sbjct: 490 LRKRRLKAIEREMPDFLDRMASVNEAGVTVVKSLHRLAQ---SDLGPISEELRRTWRDIQ 546
Query: 231 FLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKK 290
+ + + A F R Q+ V A ++ + + LR+ +E + R +
Sbjct: 547 WGASLRNALRGFDRRAQVPMVSRAVTLIMNAVAASGEVAPVLRIAANEAQDSRRLLR--- 603
Query: 291 AASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
+T ++I+ + L I+ L+ I +++
Sbjct: 604 -ERRQEMMTYLVVIYISFFVFLGIVVALTLAFIPSVE 639
Score = 58.7 bits (141), Expect = 1e-06, Method: Composition-based stats.
Identities = 33/220 (15%), Positives = 71/220 (32%), Gaps = 8/220 (3%)
Query: 104 AAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCA 163
AA +++ + + P + + + + + L A +
Sbjct: 92 AALIVQTFAVPASALREALPPALGFLAAVASMPNLSVYELFGLVLVSSATVGATLAAGTY 151
Query: 164 PSVW--ISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEE 221
W + + R+ I A P + + SG+ + L + E+ + E
Sbjct: 152 VVRWEYLDQRARARRVQIDAALPQTIAFIYALSRSGMPFQKVLATLTEN-QHVYGEAARE 210
Query: 222 MLLTIAELS-FLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETR 280
+ + ++ F + A RT + + T+ L G S+ L +
Sbjct: 211 FGVAVNDVQTFGTDLPTALRRMAERTPSQRLDDFTENLTSVLTSGQSLSAFLHEQYDRFQ 270
Query: 281 SERLME----AEKKAASLGPKLTVPMIIFFLPVLILVIIG 316
+E + E A +TV + + ILV++G
Sbjct: 271 AESEAQQQQYLELLATFAEVYVTVLVAGPLFLITILVVVG 310
>gi|237653360|ref|YP_002889674.1| type II secretion system protein [Thauera sp. MZ1T]
gi|237624607|gb|ACR01297.1| type II secretion system protein [Thauera sp. MZ1T]
Length = 289
Score = 78.8 bits (193), Expect = 1e-12, Method: Composition-based stats.
Identities = 33/171 (19%), Positives = 70/171 (40%), Gaps = 3/171 (1%)
Query: 133 IWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLI 192
+ + + V + P + L Q+R I++ PDAL ++
Sbjct: 68 LLAVTVGGIGSWLASGEVLIALASAGALALLPRLAFGLLRQRRLDLIEQQLPDALQVIAG 127
Query: 193 CVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVR 252
+ +G+S+ AL+++ + P+++E LT+ E A ++ R +M +
Sbjct: 128 GLRAGVSMTVALQQLVREGR---PPIAQEFDLTLREHRLGIPLDEALDHLAARVRMPSLT 184
Query: 253 NATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMI 303
A+ ++ G S+ ++L RS+ ME + A + KL ++
Sbjct: 185 LVIAAMRIANETGGSLAEALERAALTVRSQLAMEGKIGALTAQGKLQAVVV 235
>gi|304405042|ref|ZP_07386702.1| Type II secretion system F domain protein [Paenibacillus
curdlanolyticus YK9]
gi|304345921|gb|EFM11755.1| Type II secretion system F domain protein [Paenibacillus
curdlanolyticus YK9]
Length = 268
Score = 78.8 bits (193), Expect = 1e-12, Method: Composition-based stats.
Identities = 41/214 (19%), Positives = 78/214 (36%), Gaps = 21/214 (9%)
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAP---SVWISNLVQKRQSSIKRAWPD 185
+G+ W+ + + L +G P ++ +++R+ + A PD
Sbjct: 55 AIGLGWMAWTCSAILAALAQEGALLALGAMIGVMLPLAKYREVAQQMERRRQDMVLALPD 114
Query: 186 ALDLLLICVESGISIDQALRRVA---EDIGGQS-------------VPLSEEMLLTIAEL 229
L L++ V +G ++ +A+ R A ED+ G S PL E I L
Sbjct: 115 VLGKLMLLVGAGETVQRAIIRCADGREDVTGSSINKGKKRKKAKLEHPLHVEWTRMIRSL 174
Query: 230 SFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTS-IGDSLRVLVSETRSERLMEAE 288
+ + E F R + ++ R G +L+ L +R A
Sbjct: 175 ENGQSFAQSIEAFSRRCAVQEASMFATVVLLHYRKGGDRFVLALKELSFSLWEKRKATAR 234
Query: 289 KKAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
+ KL P+ +L++ + PA+L +
Sbjct: 235 MRGEEASSKLVFPL-AGIFFLLLIAVAAPAVLMM 267
>gi|10334986|gb|AAD38173.2|AF152598_2 TadB [Aggregatibacter actinomycetemcomitans]
gi|26000716|gb|AAN75212.1| TadB [Aggregatibacter actinomycetemcomitans]
Length = 295
Score = 78.8 bits (193), Expect = 1e-12, Method: Composition-based stats.
Identities = 43/215 (20%), Positives = 81/215 (37%), Gaps = 16/215 (7%)
Query: 107 FRSEYSLNILLVVR-----LVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGF 161
+S+ SL + L+ I+ + F + + +L + L+G+V F
Sbjct: 48 LKSKISLWYYHFTKGDKRNLIRNIVISCFILFAFFVINVAYIHIDRLVFCLIFLVGFVLF 107
Query: 162 CAPSVWISNLVQKR-QSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSE 220
I L Q R + + +P+ + +L SG + QAL R +D+ GQ L E
Sbjct: 108 ------IWKLGQYRNKKTFNAMFPEVIQILNAAATSGAGLLQALERCGKDLTGQ---LGE 158
Query: 221 EMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETR 280
E ++ + FE+ Y+R + + G I + + L
Sbjct: 159 EFKSIHKRIAIGEDPVSVFEDSYDRYPYKEFYFFITIVRTNLSKGGQIREVISRLGRVIA 218
Query: 281 SERLMEAEKKAASLGPKLTVPMIIFFLPVLILVII 315
ME +KKA + +++ ++ PV +
Sbjct: 219 DSNKMEKKKKAMTSEARMSAIIVAC-FPVGFFFFM 252
>gi|210629926|ref|ZP_03296173.1| hypothetical protein COLSTE_00056 [Collinsella stercoris DSM 13279]
gi|210160743|gb|EEA91714.1| hypothetical protein COLSTE_00056 [Collinsella stercoris DSM 13279]
Length = 218
Score = 78.8 bits (193), Expect = 1e-12, Method: Composition-based stats.
Identities = 27/129 (20%), Positives = 53/129 (41%), Gaps = 4/129 (3%)
Query: 182 AWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLT-IAELSFLPNRQVAFE 240
+ +D++ + + +G+S D AL + G+S PL+ + ++ S L R+
Sbjct: 77 EVSEMVDIVRLGLSAGLSFDAALELYCD---GRSGPLAVRLARAHVSWQSGLSTREDELR 133
Query: 241 NFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV 300
T + + A+ Q+ G + ++L E R+ E E++ KL +
Sbjct: 134 LVARETGVRALETFAIAVSQALELGAPLAETLEGQGREMRAAHRAEVERRIERAPVKLII 193
Query: 301 PMIIFFLPV 309
P LP
Sbjct: 194 PTGTLILPA 202
>gi|295837158|ref|ZP_06824091.1| type II secretion system protein [Streptomyces sp. SPB74]
gi|197699510|gb|EDY46443.1| type II secretion system protein [Streptomyces sp. SPB74]
Length = 312
Score = 78.4 bits (192), Expect = 1e-12, Method: Composition-based stats.
Identities = 43/319 (13%), Positives = 102/319 (31%), Gaps = 12/319 (3%)
Query: 11 ATELAVAITTAVSIFSLIYAVVIPSL--GSGELEKRMKSVAVEREILRKQQITSLQKDSA 68
+ + + +Y +V L L+ + A+ + + +
Sbjct: 2 NGQWIGPVIAGAVVGLGLYVLVRALLPGARSPLQTVARVDALRARGAYEPPVHRGGEHEE 61
Query: 69 SSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFL 128
SL + + ++ L + S L ++++ + L
Sbjct: 62 DDGRFASARASLGVRLAAFYRQQGWELRSLRADLA----VLDRSWERFLATKVLLGVAGL 117
Query: 129 ILG-IIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
+ G ++ L + V + G + F P + I Q ++ ++R L
Sbjct: 118 VFGPAVFAIVVVLGLGRSPLVPVWLALACGVLFFFLPDLEIRRDAQDKRRDLRRVIGAYL 177
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSF-LPNRQVAFENFYNRT 246
DL+ + + G + +AL AE G + S + + + + A
Sbjct: 178 DLVAMSLAGGRGLPEALLAAAEVSDGWA---SRRIRDALHDARITGHTQWYALGRLGEEL 234
Query: 247 QMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFF 306
++ ++ + +L G + +SL R L E E A + + ++
Sbjct: 235 GIEELKELSSSLALVADDGAKVRESLASRAETMRHRELAEIEGSAGEKSQSMLIAQLLLC 294
Query: 307 LPVLILVIIGPAILSIIDT 325
++ +I PA + +
Sbjct: 295 A-GFLVFLIFPAAMRVFQM 312
>gi|254780722|ref|YP_003065135.1| pilus assembly protein [Candidatus Liberibacter asiaticus str.
psy62]
gi|254040399|gb|ACT57195.1| pilus assembly protein [Candidatus Liberibacter asiaticus str.
psy62]
Length = 187
Score = 78.4 bits (192), Expect = 1e-12, Method: Composition-based stats.
Identities = 28/157 (17%), Positives = 67/157 (42%), Gaps = 5/157 (3%)
Query: 169 SNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAE 228
+L++KR + +P+ALD+++ V +G+ + A+ + G S P+ E I
Sbjct: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIV---GQSSDPVRSEFRRVIET 58
Query: 229 LSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAE 288
+ + + V + + + G ++ ++L L R + M+A+
Sbjct: 59 QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
Query: 289 KKAASLGPKLTVPMI--IFFLPVLILVIIGPAILSII 323
+A S+ K + +I + F ++ P ++++
Sbjct: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
>gi|319783870|ref|YP_004143346.1| type II secretion system F domain [Mesorhizobium ciceri biovar
biserrulae WSM1271]
gi|317169758|gb|ADV13296.1| Type II secretion system F domain [Mesorhizobium ciceri biovar
biserrulae WSM1271]
Length = 321
Score = 78.4 bits (192), Expect = 1e-12, Method: Composition-based stats.
Identities = 44/265 (16%), Positives = 107/265 (40%), Gaps = 15/265 (5%)
Query: 67 SASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPII 126
+ S RT ++ ++ K++ + +LV L AG +S + +R +I
Sbjct: 31 AGRSDKRTAINRRMKLQENKISQEQVLVQLRKERGLD-AGTPL-FSADRFRALRTQSGMI 88
Query: 127 FLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGF-----CAPSVWISNLVQKRQSSIKR 181
+ + I + + G L+G+V F P + + ++R
Sbjct: 89 MPLSKFLMITCGVAMAMALVAIWYGLPPLMGFVLFVVLMPLLPVLTLRFKRKRRLKRFGM 148
Query: 182 AWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFEN 241
P+AL+L+ +++G + A+ VA ++ P+ E + E+++ + A +
Sbjct: 149 QLPEALELITRGLKAGHPVPVAIAMVAREMPD---PIGSEFGVIADEVTYGSDLVSALNS 205
Query: 242 FYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVP 301
++R + + A+ G ++ + L L + R + + +A + +++
Sbjct: 206 LFDRVGQEDLPLFVTAVSIQTSSGGNLREILDGLATTIRERGKLRRKVRAIATEGRMSA- 264
Query: 302 MIIFFLPVLILVIIGPAILSIIDTM 326
I+ +P L + AI++++
Sbjct: 265 YILTAVPAL----LFAAIMALMPGF 285
>gi|307548791|dbj|BAJ19113.1| TadB [Aggregatibacter actinomycetemcomitans]
gi|307548806|dbj|BAJ19127.1| TadB [Aggregatibacter actinomycetemcomitans]
Length = 295
Score = 78.4 bits (192), Expect = 1e-12, Method: Composition-based stats.
Identities = 43/215 (20%), Positives = 80/215 (37%), Gaps = 16/215 (7%)
Query: 107 FRSEYSLNILLVVR-----LVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGF 161
+S+ SL + L+ I+ F + + +L + L+G+V F
Sbjct: 48 LKSKISLWYYHFTKGDKRNLIRNIVISCFIFFAFFVINVAYIHIDRLVFCLIFLVGFVLF 107
Query: 162 CAPSVWISNLVQKR-QSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSE 220
I L Q R + + +P+ + +L SG + QAL R +D+ GQ L E
Sbjct: 108 ------IWKLGQYRNKKTFNAMFPEVIQILNAAATSGAGLLQALERCGKDLTGQ---LGE 158
Query: 221 EMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETR 280
E ++ + FE+ Y+R + + G I + + L
Sbjct: 159 EFKSIHKRIAIGEDPVSVFEDSYDRYPYKEFYFFITIVRTNLSKGGQIREVISRLGRVIA 218
Query: 281 SERLMEAEKKAASLGPKLTVPMIIFFLPVLILVII 315
ME +KKA + +++ ++ PV +
Sbjct: 219 DSNKMEKKKKAMTSEARMSAIIVAC-FPVGFFFFM 252
>gi|190149861|ref|YP_001968386.1| tight adherence protein B [Actinobacillus pleuropneumoniae serovar
7 str. AP76]
gi|303251576|ref|ZP_07337750.1| Flp pilus assembly protein [Actinobacillus pleuropneumoniae serovar
6 str. Femo]
gi|307249755|ref|ZP_07531733.1| Tight adherence protein B [Actinobacillus pleuropneumoniae serovar
4 str. M62]
gi|307252111|ref|ZP_07534010.1| Tight adherence protein B [Actinobacillus pleuropneumoniae serovar
6 str. Femo]
gi|307263185|ref|ZP_07544806.1| Tight adherence protein B [Actinobacillus pleuropneumoniae serovar
13 str. N273]
gi|189914992|gb|ACE61244.1| tight adherence protein B [Actinobacillus pleuropneumoniae serovar
7 str. AP76]
gi|302649574|gb|EFL79756.1| Flp pilus assembly protein [Actinobacillus pleuropneumoniae serovar
6 str. Femo]
gi|306858170|gb|EFM90248.1| Tight adherence protein B [Actinobacillus pleuropneumoniae serovar
4 str. M62]
gi|306860411|gb|EFM92425.1| Tight adherence protein B [Actinobacillus pleuropneumoniae serovar
6 str. Femo]
gi|306871547|gb|EFN03270.1| Tight adherence protein B [Actinobacillus pleuropneumoniae serovar
13 str. N273]
Length = 295
Score = 78.4 bits (192), Expect = 1e-12, Method: Composition-based stats.
Identities = 38/188 (20%), Positives = 74/188 (39%), Gaps = 7/188 (3%)
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRA-WPDA 186
+I+ + G L + A ++ +GF I L Q+R + +P+
Sbjct: 71 IIIHFLIFIGLYYLNANYIRFPNQAFMIAEVIGFI---FVIWKLGQRRNRKLFNEKFPEV 127
Query: 187 LDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRT 246
+ +L SG+S+ QAL R +DI G P+ EE + L+ + F++ Y+R
Sbjct: 128 IQVLNSATSSGVSLLQALERCGKDITG---PIGEEFTIIYKRLARGEDVMAVFQDSYSRY 184
Query: 247 QMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFF 306
+ + G + + + L ME +KKA + +++ ++ F
Sbjct: 185 PYKEFYFFISIIRTNLSRGGQMREVISRLGRAIADSNKMEQKKKAMTSEARMSAAIVACF 244
Query: 307 LPVLILVI 314
L +
Sbjct: 245 PVGFFLFM 252
>gi|307245408|ref|ZP_07527496.1| Tight adherence protein B [Actinobacillus pleuropneumoniae serovar
1 str. 4074]
gi|307254363|ref|ZP_07536201.1| Tight adherence protein B [Actinobacillus pleuropneumoniae serovar
9 str. CVJ13261]
gi|307258821|ref|ZP_07540553.1| Tight adherence protein B [Actinobacillus pleuropneumoniae serovar
11 str. 56153]
gi|306853749|gb|EFM85966.1| Tight adherence protein B [Actinobacillus pleuropneumoniae serovar
1 str. 4074]
gi|306862662|gb|EFM94618.1| Tight adherence protein B [Actinobacillus pleuropneumoniae serovar
9 str. CVJ13261]
gi|306867172|gb|EFM99028.1| Tight adherence protein B [Actinobacillus pleuropneumoniae serovar
11 str. 56153]
Length = 295
Score = 78.4 bits (192), Expect = 2e-12, Method: Composition-based stats.
Identities = 38/188 (20%), Positives = 74/188 (39%), Gaps = 7/188 (3%)
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRA-WPDA 186
+I+ + G L + A ++ +GF I L Q+R + +P+
Sbjct: 71 IIIHFLIFIGLYYLNANYIRFPNQAFMIAEVIGFI---FVIWKLGQRRNRKLFNEKFPEV 127
Query: 187 LDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRT 246
+ +L SG+S+ QAL R +DI G P+ EE + L+ + F++ Y+R
Sbjct: 128 IQVLNSATSSGVSLLQALERCGKDITG---PIGEEFTIIYKRLARGEDVMAVFQDSYSRY 184
Query: 247 QMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFF 306
+ + G + + + L ME +KKA + +++ ++ F
Sbjct: 185 PYKEFYFFISIIRTNLSRGGQMREVISRLGRAIADSNKMEQKKKAMTSEARMSAAIVACF 244
Query: 307 LPVLILVI 314
L +
Sbjct: 245 PVGFFLFM 252
>gi|294102186|ref|YP_003554044.1| Type II secretion system F domain protein [Aminobacterium
colombiense DSM 12261]
gi|293617166|gb|ADE57320.1| Type II secretion system F domain protein [Aminobacterium
colombiense DSM 12261]
Length = 309
Score = 78.4 bits (192), Expect = 2e-12, Method: Composition-based stats.
Identities = 32/147 (21%), Positives = 62/147 (42%), Gaps = 4/147 (2%)
Query: 169 SNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAE 228
Q+R +R P LD++ + +G S Q+L+ I PL + + +AE
Sbjct: 124 RVRKQRRLQRFERQIPPMLDMVSSGLRAGFSFLQSLQNAGAQIEA---PLGDTLQQVVAE 180
Query: 229 LSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAE 288
+S + + + R + A +++ G ++ L + R + + A+
Sbjct: 181 ISLGLDLEDVLNRWVERVGSLDLELAVTSILIQREIGGNLAKILENIARVMRDRQDVAAQ 240
Query: 289 KKAASLGPKLTVPMIIFFLPVLILVII 315
KA + +L +I+ LPV + VII
Sbjct: 241 MKALTSQGRLEG-LIVSLLPVAMAVII 266
>gi|46143338|ref|ZP_00204445.1| COG4965: Flp pilus assembly protein TadB [Actinobacillus
pleuropneumoniae serovar 1 str. 4074]
gi|126208033|ref|YP_001053258.1| tight adherence protein B [Actinobacillus pleuropneumoniae L20]
gi|165975970|ref|YP_001651563.1| Flp pilus assembly protein [Actinobacillus pleuropneumoniae serovar
3 str. JL03]
gi|303252183|ref|ZP_07338351.1| tight adherence protein B [Actinobacillus pleuropneumoniae serovar
2 str. 4226]
gi|307247523|ref|ZP_07529568.1| Tight adherence protein B [Actinobacillus pleuropneumoniae serovar
2 str. S1536]
gi|126096825|gb|ABN73653.1| tight adherence protein B [Actinobacillus pleuropneumoniae serovar
5b str. L20]
gi|165876071|gb|ABY69119.1| Flp pilus assembly protein [Actinobacillus pleuropneumoniae serovar
3 str. JL03]
gi|302648966|gb|EFL79154.1| tight adherence protein B [Actinobacillus pleuropneumoniae serovar
2 str. 4226]
gi|306856026|gb|EFM88184.1| Tight adherence protein B [Actinobacillus pleuropneumoniae serovar
2 str. S1536]
Length = 295
Score = 78.4 bits (192), Expect = 2e-12, Method: Composition-based stats.
Identities = 38/188 (20%), Positives = 74/188 (39%), Gaps = 7/188 (3%)
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRA-WPDA 186
+I+ + G L + A ++ +GF I L Q+R + +P+
Sbjct: 71 IIIHFLIFIGLYYLNANYIRFPNQAFMIAEVIGFI---FVIWKLGQRRNRKLFNEKFPEV 127
Query: 187 LDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRT 246
+ +L SG+S+ QAL R +DI G P+ EE + L+ + F++ Y+R
Sbjct: 128 IQVLNSATSSGVSLLQALERCGKDITG---PIGEEFAIIYKRLARGEDVMAVFQDSYSRY 184
Query: 247 QMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFF 306
+ + G + + + L ME +KKA + +++ ++ F
Sbjct: 185 PYKEFYFFISIIRTNLSRGGQMREVISRLGRAIADSNKMEQKKKAMTSEARMSAAIVACF 244
Query: 307 LPVLILVI 314
L +
Sbjct: 245 PVGFFLFM 252
>gi|302870515|ref|YP_003839152.1| Type II secretion system F domain-containing protein
[Micromonospora aurantiaca ATCC 27029]
gi|302573374|gb|ADL49576.1| Type II secretion system F domain [Micromonospora aurantiaca ATCC
27029]
Length = 290
Score = 78.0 bits (191), Expect = 2e-12, Method: Composition-based stats.
Identities = 49/305 (16%), Positives = 111/305 (36%), Gaps = 19/305 (6%)
Query: 19 TTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSK 78
A + + A + L L S+A + LR+ + A +RL +
Sbjct: 1 MAAFVVACGVIAGLGLVLAGTGLHPARPSLAQALDALRRTPTAPEEPVGARTRLLAAPLR 60
Query: 79 SLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGY 138
+L +++ ++ L +L L+ P+ +L
Sbjct: 61 ALGLPRQRMRTDLAVLGRPTATHLA-------DQALAVLAGLLLPPVAMSVLA------- 106
Query: 139 DKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGI 198
+ + + + A + G+ + Q+R+ ++ A LDL++I + G
Sbjct: 107 SGGVSFAAGMPLWASLAGAAGGWWLAETTVHAEAQRRRDELRYALSAVLDLVVISLAGGA 166
Query: 199 SIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLP-NRQVAFENFYNRTQMDCVRNATQA 257
++QAL D G + + + +A L A T + ++
Sbjct: 167 GLEQALDDACADTHGWA---AGRLNRAVATARLLRIPPWQALGQLGEDTGVVELQELAAT 223
Query: 258 LIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGP 317
+ + G I DSL + + R+ + E +A S ++++P+++ +L ++ P
Sbjct: 224 MSLAGTEGARIRDSLTIRAATLRAHQAAALEARANSATERMSMPVML-LAAAYMLFLLYP 282
Query: 318 AILSI 322
A+ ++
Sbjct: 283 AVTAV 287
>gi|307256570|ref|ZP_07538351.1| Tight adherence protein B [Actinobacillus pleuropneumoniae serovar
10 str. D13039]
gi|306864980|gb|EFM96882.1| Tight adherence protein B [Actinobacillus pleuropneumoniae serovar
10 str. D13039]
Length = 295
Score = 78.0 bits (191), Expect = 2e-12, Method: Composition-based stats.
Identities = 38/188 (20%), Positives = 74/188 (39%), Gaps = 7/188 (3%)
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRA-WPDA 186
+I+ + G L + A ++ +GF I L Q+R + +P+
Sbjct: 71 IIIHFLIFIGLYYLNANYIRFPNQAFMIAEVIGFI---FVIWKLGQRRNRKLFNEKFPEV 127
Query: 187 LDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRT 246
+ +L SG+S+ QAL R +DI G P+ EE + L+ + F++ Y+R
Sbjct: 128 IQVLNSATSSGVSLLQALERCGKDITG---PIGEEFAIIYKRLARGEDVMAVFQDSYSRY 184
Query: 247 QMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFF 306
+ + G + + + L ME +KKA + +++ ++ F
Sbjct: 185 PYKEFYFFISIIRTNLSRGGQMREVISRLGRAIADSNKMEQKKKAMTSEARMSAAIVACF 244
Query: 307 LPVLILVI 314
L +
Sbjct: 245 PVGFFLFM 252
>gi|85711970|ref|ZP_01043024.1| Flp pilus assembly protein TadB [Idiomarina baltica OS145]
gi|85694156|gb|EAQ32100.1| Flp pilus assembly protein TadB [Idiomarina baltica OS145]
Length = 281
Score = 78.0 bits (191), Expect = 2e-12, Method: Composition-based stats.
Identities = 46/235 (19%), Positives = 95/235 (40%), Gaps = 13/235 (5%)
Query: 80 LRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYD 139
++++LN I E + + ++ SL V +P+ +LI G ++
Sbjct: 16 WLAWMRQLNKNRIQAFEGTLAQ------HTQRSLQEFFVF---LPVKWLIRGYLFACASL 66
Query: 140 KLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGIS 199
LL A++ + V +P V + KR +++R P L L ++SG+S
Sbjct: 67 PLLAGLVWGGKAALVTL-LVCVVSPPVLYRRMRNKRYRALQRQLPMLLMNLSNQLKSGMS 125
Query: 200 IDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALI 259
+ A+ + ++ PL +E+ I ++ + A ++ R + + QAL
Sbjct: 126 MVNAVTSLFDEFEA---PLGQEVNELIRQVRLGDDLPTALTDWQRRVPIFSITLVVQALT 182
Query: 260 QSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVI 314
R G LR L ++ + ++A S ++ ++I L L++
Sbjct: 183 LGYRNGGQQSQVLRRLAENLGQQQKVRDRQQALSAQGRMQAWVLICMPLALFLLL 237
>gi|323529409|ref|YP_004231561.1| Type II secretion system F domain-containing protein [Burkholderia
sp. CCGE1001]
gi|323386411|gb|ADX58501.1| Type II secretion system F domain protein [Burkholderia sp.
CCGE1001]
Length = 327
Score = 78.0 bits (191), Expect = 2e-12, Method: Composition-based stats.
Identities = 33/182 (18%), Positives = 72/182 (39%), Gaps = 5/182 (2%)
Query: 145 PFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQAL 204
P QL L+ + F P++ + KR ++R P+A D++ + +G S A+
Sbjct: 118 PVQLPTLITALVAFAAFAFPTLRMLRARSKRLRLLERQLPEAADMISRALRAGHSFSSAI 177
Query: 205 RRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRY 264
+ + P E + E+++ A N R + +R A++
Sbjct: 178 GMLGNEFAE---PTGGEFRIVFDEINYGVTLNEALLNLATRVPVRDLRFFVIAVLIQRET 234
Query: 265 GTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLI--LVIIGPAILSI 322
G ++ + L + S R + + + S +L+ +I + ++ P+ LS+
Sbjct: 235 GGNLAEILDGIASLVRERLRLFDQVRVLSAEGRLSAWIIGLLPFAAAGGMNLLNPSFLSV 294
Query: 323 ID 324
+
Sbjct: 295 LW 296
>gi|307133500|dbj|BAJ19012.1| TadB [Aggregatibacter actinomycetemcomitans]
Length = 295
Score = 78.0 bits (191), Expect = 2e-12, Method: Composition-based stats.
Identities = 38/189 (20%), Positives = 71/189 (37%), Gaps = 8/189 (4%)
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKR-QSSIKRAWPDA 186
+++ F + + + LI VGF +I L Q R + + +P+
Sbjct: 71 IVISCFIFFAFFVINVAYIHIDRLVFCLIFLVGFVL---FIWKLGQYRNKKTFNAMFPEV 127
Query: 187 LDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRT 246
+ +L SG + QAL R +D+ GQ L EE ++ + FE+ Y+R
Sbjct: 128 IQILNAAATSGAGLLQALERCGKDLTGQ---LGEEFKSIHKRIAIGEDPVSVFEDSYDRY 184
Query: 247 QMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFF 306
+ + G I + + L ME +KKA + +++ ++
Sbjct: 185 PYKEFYFFITIVRTNLSKGGQIREVISRLGRVIADSNKMEKKKKAMTSEARMSAIIVAC- 243
Query: 307 LPVLILVII 315
PV +
Sbjct: 244 FPVGFFFFM 252
>gi|284028546|ref|YP_003378477.1| type II secretion system protein [Kribbella flavida DSM 17836]
gi|283807839|gb|ADB29678.1| type II secretion system protein [Kribbella flavida DSM 17836]
Length = 189
Score = 78.0 bits (191), Expect = 2e-12, Method: Composition-based stats.
Identities = 35/173 (20%), Positives = 69/173 (39%), Gaps = 11/173 (6%)
Query: 147 QLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRR 206
+ + + +G P+ V+KR + I P A+DLL C+ +G A+
Sbjct: 15 PTVLAYLAIPAVLGRLEPAA-----VRKRNARISADLPLAVDLLAACLRAGRPPQAAIAT 69
Query: 207 VAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGT 266
V + G PL+ + L + A+ +A ++ R G
Sbjct: 70 VGHALDG---PLAGLLAEVERRLDLGADAIDAWSVLRAE---PTCATFARATQRALRSGA 123
Query: 267 SIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAI 319
+ +L ++ R R AE++ ++ + +P+ + FLP +L+ + P I
Sbjct: 124 PLAKTLESQSADLRQSRRWTAEQQTRAVETRSVLPLGLCFLPAFVLLGVVPTI 176
>gi|14590541|ref|NP_142609.1| hypothetical protein PH0654 [Pyrococcus horikoshii OT3]
gi|3257062|dbj|BAA29745.1| 308aa long hypothetical protein [Pyrococcus horikoshii OT3]
Length = 308
Score = 78.0 bits (191), Expect = 2e-12, Method: Composition-based stats.
Identities = 45/240 (18%), Positives = 101/240 (42%), Gaps = 19/240 (7%)
Query: 77 SKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIF 136
S L ++ + K L +++ L +AG ++ + +V+ L+ +I +L I+
Sbjct: 11 SSRLAKVIESVVPKKYLKRYDLL--LYSAGI--DFKASEYIVISLIFGVIGGVLAFIF-- 64
Query: 137 GYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVES 196
+ L + +I+ + P+ + +R ++RA PDA L + +
Sbjct: 65 -----TDSLKILTISFLIVFLTFLYLYPNF----RIVRRIEEMERALPDAFFYLAGSLRA 115
Query: 197 GISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRT-QMDCVRNAT 255
G+S +AL ++ + L+ E + T+AE+ A F R + + +
Sbjct: 116 GVSFSEALEELST---AKFGALTREFMRTVAEMKRGRPTVDALRAFALRNKKSLVIYRSM 172
Query: 256 QALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVII 315
+I++ G + D L + ++ R ++ E+KA++ + F+ I+ I+
Sbjct: 173 MIVIEALERGAPMADVLIAVGNDVREILRIKKERKASTGMQMMFFLTSGGFVGPFIVAIV 232
>gi|57641786|ref|YP_184264.1| hypothetical protein TK1851 [Thermococcus kodakarensis KOD1]
gi|57160110|dbj|BAD86040.1| hypothetical membrane protein, conserved [Thermococcus kodakarensis
KOD1]
Length = 305
Score = 78.0 bits (191), Expect = 2e-12, Method: Composition-based stats.
Identities = 42/233 (18%), Positives = 93/233 (39%), Gaps = 10/233 (4%)
Query: 97 NIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILI 156
++ +L + Y L + + +L++ ++ L +
Sbjct: 15 QLIERLLPGRYLKRYELFLYSANINFLAAEYLVISLLMGLILGLAFSIFSFLYGAIAFIA 74
Query: 157 GYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSV 216
G++G ++ + KR I+++ PDA L + +GIS +AL + +
Sbjct: 75 GFIGMAF--LYPYWRLTKRIDEIEKSLPDAFFYLASSLRAGISFSEALEELTT---AKFG 129
Query: 217 PLSEEMLLTIAELSFLPNRQVAFENFYNRT-QMDCVRNATQALIQSDRYGTSIGDSLRVL 275
L+EE T+AE++ A F R + + + +I++ G + D L +
Sbjct: 130 ALTEEFKRTVAEINKGRPTADALRAFALRNKRSQVLYRSMMIVIEALERGAPMSDVLMYV 189
Query: 276 VSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMKD 328
++ R ++ E+KA++ + + F+ LIL I + ++ +M
Sbjct: 190 ANDVREILRIQQERKASTGMQIMFFTITSGFVGPLILGI----VTQVMSSMSS 238
>gi|46204164|ref|ZP_00050408.2| COG4965: Flp pilus assembly protein TadB [Magnetospirillum
magnetotacticum MS-1]
Length = 188
Score = 78.0 bits (191), Expect = 2e-12, Method: Composition-based stats.
Identities = 30/160 (18%), Positives = 66/160 (41%), Gaps = 5/160 (3%)
Query: 168 ISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIA 227
+S L ++R ++ P+A+D+++ + SGI + LR ++ + PL E + +
Sbjct: 2 LSRLQKRRVAAFVEELPNAMDVIVRGLRSGIPLGDCLRMISREAKE---PLRSEFRIAME 58
Query: 228 ELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEA 287
+ A R + V + + G ++ ++L L R + M
Sbjct: 59 AQALGLAMPDAILRMCERVPVTEVNFFAVVIGIQQKSGGNLSEALGNLSRVLRERKKMAG 118
Query: 288 EKKAASLGPKLTVPMI--IFFLPVLILVIIGPAILSIIDT 325
+ +A S+ K + +I + F L + P +++ T
Sbjct: 119 KIQAMSMEAKASAVIIGALPFFVALATYLSSPDYTALLWT 158
>gi|261867451|ref|YP_003255373.1| TadB [Aggregatibacter actinomycetemcomitans D11S-1]
gi|261412783|gb|ACX82154.1| TadB [Aggregatibacter actinomycetemcomitans D11S-1]
Length = 295
Score = 77.6 bits (190), Expect = 2e-12, Method: Composition-based stats.
Identities = 38/189 (20%), Positives = 70/189 (37%), Gaps = 8/189 (4%)
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKR-QSSIKRAWPDA 186
+ + F + + + LI VGF +I L Q R + + +P+
Sbjct: 71 IAISCFIFFAFFVINVAYIHIDRLVFCLIFLVGFVL---FIWKLGQYRNKKTFNAMFPEV 127
Query: 187 LDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRT 246
+ +L SG + QAL R +D+ GQ L EE ++ + FE+ Y+R
Sbjct: 128 IQILNAAATSGAGLLQALERCGKDLTGQ---LGEEFKSIHKRIAIGEDPVSVFEDSYDRY 184
Query: 247 QMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFF 306
+ + G I + + L ME +KKA + +++ ++
Sbjct: 185 PYKEFYFFITIVRTNLSKGGQIREVISRLGRVIADSNKMEKKKKAMTSEARMSAIIVAC- 243
Query: 307 LPVLILVII 315
PV +
Sbjct: 244 FPVGFFFFM 252
>gi|261349491|ref|ZP_05974908.1| conserved hypothetical membrane-spanning protein
[Methanobrevibacter smithii DSM 2374]
gi|288861855|gb|EFC94153.1| conserved hypothetical membrane-spanning protein
[Methanobrevibacter smithii DSM 2374]
Length = 306
Score = 77.6 bits (190), Expect = 2e-12, Method: Composition-based stats.
Identities = 44/210 (20%), Positives = 90/210 (42%), Gaps = 15/210 (7%)
Query: 116 LLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKR 175
++ + + +IF IL + G + L + +LI + F A V+I +KR
Sbjct: 36 IVASKFLAILIFFILFADIVIGIFIVFFKISDLSLFLPLLI--IPFVATYVFIKQ--EKR 91
Query: 176 QSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNR 235
+ I+++ PD L L ++ G+S + A+ +++ G PL +E IAE+ N
Sbjct: 92 AAEIEKSAPDFLRQLSAMLKVGLSFENAMEDMSKYGEG---PLYDETRRAIAEIKVGRNF 148
Query: 236 QVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLG 295
A+ R + + ++ S + G+SI + + + + R ++ E+K
Sbjct: 149 DDAWMATAQRLKSKELGRIFTIILGSRKSGSSIANVIFDVSNNLRDMLALKRERK----- 203
Query: 296 PKLTVPMIIFFLPVLILVIIGPAILSIIDT 325
+ M+ ++ VI P L ++
Sbjct: 204 ---SSVMMAVMFLIISAVIASPFALGMVSV 230
>gi|256785971|ref|ZP_05524402.1| integral membrane protein [Streptomyces lividans TK24]
gi|289769863|ref|ZP_06529241.1| integral membrane protein [Streptomyces lividans TK24]
gi|289700062|gb|EFD67491.1| integral membrane protein [Streptomyces lividans TK24]
Length = 306
Score = 77.6 bits (190), Expect = 2e-12, Method: Composition-based stats.
Identities = 45/315 (14%), Positives = 107/315 (33%), Gaps = 12/315 (3%)
Query: 13 ELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRL 72
L + + IYA+V + S ++ VA + + + + +
Sbjct: 2 NLTMPVLVGAVTGLGIYALVRALMPS--RRSPIQQVARIDAMRARGAAYESSRAAKDTSR 59
Query: 73 RTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILG- 131
+ V +L L+ ++ L + S L + ++ + L G
Sbjct: 60 LGSLRAQVGARVAELYLQQGWEQRSLRADLA----VLDRSWEKFLATKALLAVGGLFFGP 115
Query: 132 IIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLL 191
++ + + V +L + F P + + ++ ++R LDL+
Sbjct: 116 FLFAIVWQLGFGDSPIIPVWLALLCAALFFFLPDLEVRRDAADKRRDLRRVIGAYLDLVS 175
Query: 192 ICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSF-LPNRQVAFENFYNRTQMDC 250
+ + G + +AL AE G + + + +A+ ++ A ++
Sbjct: 176 MSLAGGRGLPEALMAAAEVSDGWA---THRIRNALADARITGISQWQALGQLGEDLGVEE 232
Query: 251 VRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVL 310
+++ + +L G + +SL R L E E A + V ++
Sbjct: 233 LKDLSASLALVADDGAKVRESLASRAETMRHRELSEIEGSAGEKSQSMLVAQLLLCA-GF 291
Query: 311 ILVIIGPAILSIIDT 325
++ +I PA + +
Sbjct: 292 LVFLIYPAAMRVFQV 306
>gi|327401124|ref|YP_004341963.1| Type II secretion system F domain-containing protein [Archaeoglobus
veneficus SNP6]
gi|327316632|gb|AEA47248.1| Type II secretion system F domain protein [Archaeoglobus veneficus
SNP6]
Length = 647
Score = 77.6 bits (190), Expect = 2e-12, Method: Composition-based stats.
Identities = 48/307 (15%), Positives = 106/307 (34%), Gaps = 39/307 (12%)
Query: 25 FSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQ---QITSLQKDSASSRLRTRDSKSLR 81
F+++ ++ P+ + R K + R++ ++ QI L+K S + R L
Sbjct: 304 FAMVIKLLTPTEEGEPPKLREKYTYLRRKVEEREFSDQIKELRKRINSWKFRKALRHPLD 363
Query: 82 NFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKL 141
+ + + L Y
Sbjct: 364 PI-------------------------KRRPMYVFIF----SIPAGLAFMFYGFSRYQFS 394
Query: 142 LEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISID 201
+ + +V I + V AP V +K+ R P L+ L ESG+ I
Sbjct: 395 PDIQWLFKVDDYIFLSLVIILAPFVVFYEAGRKKAKRTLRLTPIFLNKLASANESGMPIY 454
Query: 202 QALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQS 261
+A+ +A+ + PL +E+ ++L + + A F NR ++ + L ++
Sbjct: 455 RAIAMIAK---TDTTPLKKEIQKIKSDLDWGISLNDALIRFANRLRVFELSRTITLLNEA 511
Query: 262 DRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILS 321
+ ++ + L + + + L+ E L +II+ + + I+ +
Sbjct: 512 LKSTGNVTEVLMISAKDASNAELLRRE----RLSNMFMYVIIIYISFFVFIGIVYIITTT 567
Query: 322 IIDTMKD 328
+ T+ +
Sbjct: 568 FLSTLAE 574
Score = 54.9 bits (131), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/218 (14%), Positives = 77/218 (35%), Gaps = 10/218 (4%)
Query: 106 GFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPS 165
G Y + + + V+ I L I + + + L + + + G+ +
Sbjct: 65 GLIISYIVIFFIGLPEVIFPIALPEPIYSFWMNFRAFVFAALLCAMITVALYFAGYFMFT 124
Query: 166 VWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLT 225
++ S ++ R+S I RA P A+ + G+++ + R ++ + +S E
Sbjct: 125 IYPSTVISDRKSKIDRALPHAITFMYSLSRGGMNLIEIFRALS-EYYEVYSEVSREAARI 183
Query: 226 IAELS-FLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVS----ETR 280
+ ++ + + A + + + + LI G I L R
Sbjct: 184 LRDMEVLGKDLRTALADAVELSPSENFKEFLHGLITIIDSGGDITKYLEDRADFYLERAR 243
Query: 281 SERLMEAEKKAASLGPKLTV----PMIIFFLPVLILVI 314
++ E +T P+ + + +++V+
Sbjct: 244 QDQKNFLEFLGLMAESYITAFVAGPLFLIIIQTVMVVM 281
>gi|290559840|gb|EFD93163.1| type II secretion system protein [Candidatus Parvarchaeum
acidophilus ARMAN-5]
Length = 298
Score = 77.6 bits (190), Expect = 2e-12, Method: Composition-based stats.
Identities = 47/244 (19%), Positives = 99/244 (40%), Gaps = 16/244 (6%)
Query: 84 VKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLE 143
KKL + + +L A +Y I + + + ++ L+ G+ + + +
Sbjct: 22 FKKLAFNFKGIVPTLKQELIQASMSIDYLDYIAAGIVVALVLVGLMAGVSGLIILIAIKK 81
Query: 144 YPFQLRVGAVILIGYVGFCAPSVWI-------SNLVQKRQSSIKRAWPDALDLLLICVES 196
+++ A++ + F P+V+ KR I+ A+ ++I V S
Sbjct: 82 NLLTIKIEAIL--PVLIFVVPAVYFFYFLNFPKLQAVKRTKLIEEQVVFAIREIMIKVGS 139
Query: 197 GISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQ 256
G+ I AL VA G +S+E L + E+ + A ++ R +R A
Sbjct: 140 GVPIFNALLDVAN---GNYGIISDEFKLAVEEIESGVPQNDALDHLARRVPSQSLRRAID 196
Query: 257 ALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPK-LTVPMIIFFLPVL---IL 312
++ + + G+ I +L ++ ++ + + A L P + +I +P L +
Sbjct: 197 IILNAIKSGSDIAGTLELINDMLIKKQQSDMKSYAGELTPMSMAYMLISVVVPSLGMSVF 256
Query: 313 VIIG 316
VI+G
Sbjct: 257 VILG 260
>gi|319940444|ref|ZP_08014789.1| hypothetical protein HMPREF9464_00008 [Sutterella wadsworthensis
3_1_45B]
gi|319806070|gb|EFW02819.1| hypothetical protein HMPREF9464_00008 [Sutterella wadsworthensis
3_1_45B]
Length = 326
Score = 77.6 bits (190), Expect = 2e-12, Method: Composition-based stats.
Identities = 28/185 (15%), Positives = 70/185 (37%), Gaps = 3/185 (1%)
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
L+LG + + + A + A ++ + + + ++ P+A+
Sbjct: 100 LVLGALSFTAAALVGRMTDYPFLIAFFGGAALFASAAALLYLRAMGEWTEELGKSLPEAI 159
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQ 247
D + +G+ A A+++ G LSEE+ L + + +R
Sbjct: 160 DSIARICRAGVPAQTAFGLAAQNLRG---ALSEELRTIDRWLRLGVPLKQVLQESAHRVP 216
Query: 248 MDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFL 307
+ R +I S G + D+L L + R + + +A + + ++ ++ +
Sbjct: 217 LPEYRFFAVIVIISQESGGRLADTLERLAATLRERAELALKVQAKTSEARASIKIVACLV 276
Query: 308 PVLIL 312
P +++
Sbjct: 277 PGVLI 281
>gi|302559125|ref|ZP_07311467.1| integral membrane protein [Streptomyces griseoflavus Tu4000]
gi|302476743|gb|EFL39836.1| integral membrane protein [Streptomyces griseoflavus Tu4000]
Length = 308
Score = 77.6 bits (190), Expect = 2e-12, Method: Composition-based stats.
Identities = 42/315 (13%), Positives = 107/315 (33%), Gaps = 12/315 (3%)
Query: 13 ELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRL 72
+L + + + +Y +V + + + VA + + + + +
Sbjct: 4 QLTMPVVIGAVLGLGVYVLVRALMPTKR--SAVSQVARIDAMRARGTAYESARTTQDTGR 61
Query: 73 RTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILG- 131
+ V + L+ ++ L E S L ++++ + L G
Sbjct: 62 LGTLRAEMGVRVAEFYLQQGWEQRSLRADLA----VLERSWEKFLATKVLLSVAGLFFGP 117
Query: 132 IIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLL 191
++ + + V +L + F P + + ++ ++R LDL+
Sbjct: 118 FLFAIVWTLGFGDSPIIPVWLALLCAALFFFLPDLEVRRDAADKRRDLRRVIGAYLDLVS 177
Query: 192 ICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSF-LPNRQVAFENFYNRTQMDC 250
+ + G + +AL AE G + + + +A+ ++ A ++
Sbjct: 178 MSLAGGRGLPEALMAAAEVSDGWA---THRIRNALADARITGISQWQALGQLGEELGVEE 234
Query: 251 VRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVL 310
+++ + +L G + +SL R L E E A + V ++
Sbjct: 235 LKDLSASLALVADDGAKVRESLASRAETMRHRELSEIEGSAGEKSQSMLVAQLLLCA-GF 293
Query: 311 ILVIIGPAILSIIDT 325
++ +I PA + +
Sbjct: 294 LVFLIFPAAMRVFQV 308
>gi|261820218|ref|YP_003258324.1| type II secretion system F domain protein [Pectobacterium wasabiae
WPP163]
gi|261604231|gb|ACX86717.1| Type II secretion system F domain protein [Pectobacterium wasabiae
WPP163]
Length = 326
Score = 77.6 bits (190), Expect = 2e-12, Method: Composition-based stats.
Identities = 30/198 (15%), Positives = 71/198 (35%), Gaps = 3/198 (1%)
Query: 111 YSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISN 170
++ + + + L L + L + +I + + +
Sbjct: 83 WAQMAFIGWKKNLLQRSLSLAAASLILGMILGQRTLLPLTMGLIFTLLLFVSIGMLMFRS 142
Query: 171 LVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELS 230
+QK +++ + P+A+D + +G+ + VAE + G PL+ E L
Sbjct: 143 TLQKHLKALRESLPEAIDAITRSCRAGVPVANTFSIVAEHLTG---PLANEFKTIDHWLR 199
Query: 231 FLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKK 290
+ + R M R LI + G +G++L L + R R ++ + +
Sbjct: 200 LGIPLRQVIQASATRVPMAEYRFFVVILIINQEAGGRLGETLERLSATLRDRRELQLKVQ 259
Query: 291 AASLGPKLTVPMIIFFLP 308
+ + + + ++ P
Sbjct: 260 SKTSEARASAKIVAALFP 277
>gi|119962927|ref|YP_948622.1| type II secretion system protein F [Arthrobacter aurescens TC1]
gi|119949786|gb|ABM08697.1| putative bacterial type II secretion system protein F domain
[Arthrobacter aurescens TC1]
Length = 316
Score = 77.6 bits (190), Expect = 2e-12, Method: Composition-based stats.
Identities = 37/223 (16%), Positives = 84/223 (37%), Gaps = 25/223 (11%)
Query: 96 ENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVIL 155
L AG R + +++ + ++G I +G +++
Sbjct: 73 SGTRLLLEQAGSRMRPA--DYVLLVICATFTGAVVGFI----------------LGGLLV 114
Query: 156 IGYVGFCAP---SVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIG 212
G P + +S + +R++ + D L +L + +G S+ +A+ VA +
Sbjct: 115 AILFGILVPIGARMVLSVMTSRRRAQFEAQLGDTLQMLSGSMRAGHSLLRAVDAVALEAQ 174
Query: 213 GQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSL 272
+ EE + E+ + + A + NR + ATQA+ G + + L
Sbjct: 175 SPTK---EEFARIVGEVRLGRDLRDALLDAANRLHSEDFLWATQAIEIHREVGGDLAEVL 231
Query: 273 RVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVII 315
+ R ++ + +A S +L+ ++ LP + + +
Sbjct: 232 DHVAETIRERSQIKGQVRALSAEGRLSA-YVLIALPTGMFLYL 273
>gi|171921005|gb|ACB59188.1| TadB [Actinobacillus suis ATCC 33415]
Length = 295
Score = 77.6 bits (190), Expect = 3e-12, Method: Composition-based stats.
Identities = 35/187 (18%), Positives = 69/187 (36%), Gaps = 5/187 (2%)
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
+I+ + G L + +++ +GF + K +P+ +
Sbjct: 71 IIIHFLIFTGLYYLNAQFIRFNNQLFMVVELIGFIVAVWKLGQRRNK--KLFNEKFPEVI 128
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQ 247
+L SGIS+ QAL R +DI G P+ EE + L+ + F + Y+R
Sbjct: 129 QVLNSATSSGISLLQALERCGKDITG---PIGEEFSIIYKRLARGEDAMAVFHDSYSRYP 185
Query: 248 MDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFL 307
+ + G + + + L ME +KKA + +++ ++ F
Sbjct: 186 YKEFYFFISIIRTNLSRGGQMREVISRLGRAIADSNKMEQKKKAMTSEARMSAAIVACFP 245
Query: 308 PVLILVI 314
L +
Sbjct: 246 VAFFLFM 252
>gi|293391328|ref|ZP_06635662.1| Flp pilus assembly protein TadB [Aggregatibacter
actinomycetemcomitans D7S-1]
gi|32452627|gb|AAP43989.1| TadB [Aggregatibacter actinomycetemcomitans]
gi|290951862|gb|EFE01981.1| Flp pilus assembly protein TadB [Aggregatibacter
actinomycetemcomitans D7S-1]
Length = 295
Score = 77.6 bits (190), Expect = 3e-12, Method: Composition-based stats.
Identities = 37/189 (19%), Positives = 71/189 (37%), Gaps = 8/189 (4%)
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKR-QSSIKRAWPDA 186
+++ F + + + LI VGF +I L Q R + + +P+
Sbjct: 71 IVISCFVFFAFFVINVAYIHIDRLVFCLIFLVGFVL---FIWKLGQYRNKKTFNAMFPEV 127
Query: 187 LDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRT 246
+ +L S + + QAL R +D+ GQ L +E LS + F++ Y+R
Sbjct: 128 IQILNAAATSSVGLLQALERCGKDLTGQ---LGQEFKSIHRRLSIGEDPATVFDDSYDRY 184
Query: 247 QMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFF 306
+ + G I + + L ME +KKA + +++ ++
Sbjct: 185 PYKEFYFFITIIRNNLNKGGQIREVISRLGRVIADSNKMEKKKKAMTSEARMSAIIVAC- 243
Query: 307 LPVLILVII 315
PV +
Sbjct: 244 FPVGFFFFM 252
>gi|320008844|gb|ADW03694.1| Type II secretion system F domain protein [Streptomyces
flavogriseus ATCC 33331]
Length = 311
Score = 77.6 bits (190), Expect = 3e-12, Method: Composition-based stats.
Identities = 34/195 (17%), Positives = 62/195 (31%), Gaps = 18/195 (9%)
Query: 96 ENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVIL 155
+ I KL A G L VV V + ++ F L
Sbjct: 68 KRIELKLAATGLDITPGEYFLYVVGSVAAFWLIAASLLASFFGP---------------L 112
Query: 156 IGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQS 215
G + +++ KR + P+ +L +G+S+ ++ A+++
Sbjct: 113 AGLAALWGANTFLNWHRTKRTEAFISQLPEISRVLANATHAGLSLRTSIAMAADELES-- 170
Query: 216 VPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVL 275
P +E+ + +L A R + LI S+R G + SLR L
Sbjct: 171 -PAGDELRVVADQLGVGRTLDDALGELAERLPSRELVVLVSTLILSNRAGGQVVSSLRNL 229
Query: 276 VSETRSERLMEAEKK 290
+ E +
Sbjct: 230 TVTLEERKETRREVR 244
>gi|332970973|gb|EGK09947.1| integral membrane protein [Desmospora sp. 8437]
Length = 315
Score = 77.6 bits (190), Expect = 3e-12, Method: Composition-based stats.
Identities = 33/192 (17%), Positives = 76/192 (39%), Gaps = 10/192 (5%)
Query: 125 IIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWP 184
I+FL + I++I + L +++ VG ++++ + +
Sbjct: 90 ILFLGVVILFIGLHLMAGIESVWLSAIISLVVVPVG---SNLFLRSRQHIYAQRMDSQLS 146
Query: 185 DALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYN 244
+ LL +G+SI Q LR V +++ P+ E+ + E+ + + A +
Sbjct: 147 EVCRLLSSAASAGLSIPQGLRLVVQEM---PAPVKIELGRVVREIELGRDLEGALNDLLE 203
Query: 245 RTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMII 304
R ++ ALI R G + + + + +++ KA + + +
Sbjct: 204 RIHTQDMKVFINALIIQRRAGGDLAKVMSQMAATMEERKIIHQTIKAVTSQARTSA---- 259
Query: 305 FFLPVLILVIIG 316
+ LP++ L+I
Sbjct: 260 YALPIISLLIAF 271
>gi|300704934|ref|YP_003746537.1| tad secretion system, pilus assembly protein [Ralstonia
solanacearum CFBP2957]
gi|299072598|emb|CBJ43948.1| Tad secretion system, pilus assembly protein [Ralstonia
solanacearum CFBP2957]
Length = 325
Score = 77.2 bits (189), Expect = 3e-12, Method: Composition-based stats.
Identities = 49/319 (15%), Positives = 117/319 (36%), Gaps = 27/319 (8%)
Query: 9 FDATELAVAITTAVSIFSLIYAVVIPSLGS-GELEKRMKSVAVEREILRKQQITSLQKDS 67
D + ++ V+I + + + S + KR L+ ++S +
Sbjct: 1 MDTLVIGFVLSVFVAIVLGVSGLYLWWDSSHSQTAKRFSQ------RLKMALLSSARHGG 54
Query: 68 ASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIF 127
S L+ R L + + L +G +S L + L +P++
Sbjct: 55 DESILKQRVLAESPEVAAMLG--RLPRIAQLDRILLQSGLS--WSAGRFLALTLGLPVVV 110
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
++ L P+ + + G PS ++ +R ++ P+A
Sbjct: 111 IVG--------VSPLNPPWMATLALALAAGS----LPSFYVMYRRTRRLLRLEAQLPEAT 158
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQ 247
DL+ + +G S+ AL +++ P+ E+ + ++++ + A +R
Sbjct: 159 DLISRALRAGHSLPSALEMAGDEL---PQPVGPELAIVFGQINYGVSMNDALAGLIDRVP 215
Query: 248 MDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFL 307
+D +R A++ G ++ + L + + R + + + S +L I+ L
Sbjct: 216 VDDLRYLVIAILIQRESGGNLAEILDNVGTLIRKRLQLLDKVRVLSAEGRL-GGWILTAL 274
Query: 308 PVLILVIIGPAILSIIDTM 326
P + V++ ++ T+
Sbjct: 275 PPAMAVVVYQLNPELMSTL 293
>gi|149175287|ref|ZP_01853909.1| secretion system protein TadB [Planctomyces maris DSM 8797]
gi|148845896|gb|EDL60237.1| secretion system protein TadB [Planctomyces maris DSM 8797]
Length = 323
Score = 77.2 bits (189), Expect = 3e-12, Method: Composition-based stats.
Identities = 50/314 (15%), Positives = 110/314 (35%), Gaps = 29/314 (9%)
Query: 14 LAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLR 73
+++A + F+ VI S + E R+ + +++ ++ SL K+
Sbjct: 7 ISIAAFLGMMAFAGAVIFVIKDFSSSKAEDRLAVITGKKK--SSEESASLLKEEFVKGGL 64
Query: 74 TRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGII 133
S + + K NI L A + + + L++ V +
Sbjct: 65 NSLSDQVAHLFDKFG--------NIKLLLEQA--EAPFKADTFLLMTAVTGSMGFAAAWF 114
Query: 134 WIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLIC 193
P A + G P +W+ +R + PDAL+L+
Sbjct: 115 --------TNAPGPFCPVAALGTGV----LPFMWLLFRRNRRFKKFGQQLPDALELVGRA 162
Query: 194 VESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRN 253
+ SG S+ L V +++ P+S E L E + A +N R ++
Sbjct: 163 LRSGHSLSSGLSVVVQEM---PPPISTEFALAYEEQNLGIPIGEALKNMLTRMPNLDLKF 219
Query: 254 ATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLI-- 311
A++ + G + + L + R + + +A + +++ +++ L
Sbjct: 220 FVTAVVIQRQAGGDLAEILDKIGYIIRQRFKIMGQVQALTGEGRISGVVLMALPIALFFA 279
Query: 312 LVIIGPAILSIIDT 325
+ + P + ++ T
Sbjct: 280 VYYLNPDYVMLLFT 293
>gi|21222913|ref|NP_628692.1| integral membrane protein [Streptomyces coelicolor A3(2)]
gi|7242745|emb|CAB77319.1| putative integral membrane protein [Streptomyces coelicolor A3(2)]
Length = 302
Score = 77.2 bits (189), Expect = 3e-12, Method: Composition-based stats.
Identities = 44/312 (14%), Positives = 106/312 (33%), Gaps = 12/312 (3%)
Query: 16 VAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTR 75
+ + IYA+V + S ++ VA + + + + +
Sbjct: 1 MPVLVGAVTGLGIYALVRALMPS--RRSPIQQVARIDAMRARGAAYESSRAAKDTSRLGS 58
Query: 76 DSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILG-IIW 134
+ V +L L+ ++ L + S L + ++ + L G ++
Sbjct: 59 LRAQVGARVAELYLQQGWEQRSLRADLA----VLDRSWEKFLATKALLAVGGLFFGPFLF 114
Query: 135 IFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICV 194
+ + V +L + F P + + ++ ++R LDL+ + +
Sbjct: 115 AIVWQLGFGDSPIIPVWLALLCAALFFFLPDLEVRRDAADKRRDLRRVIGAYLDLVSMSL 174
Query: 195 ESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSF-LPNRQVAFENFYNRTQMDCVRN 253
G + +AL AE G + + + +A+ ++ A ++ +++
Sbjct: 175 AGGRGLPEALMAAAEVSDGWA---THRIRNALADARITGISQWQALGQLGEDLGVEELKD 231
Query: 254 ATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILV 313
+ +L G + +SL R L E E A + V ++ ++
Sbjct: 232 LSASLALVADDGAKVRESLASRAETMRHRELSEIEGSAGEKSQSMLVAQLLLCA-GFLVF 290
Query: 314 IIGPAILSIIDT 325
+I PA + +
Sbjct: 291 LIYPAAMRVFQV 302
>gi|239929199|ref|ZP_04686152.1| integral membrane protein [Streptomyces ghanaensis ATCC 14672]
Length = 314
Score = 77.2 bits (189), Expect = 3e-12, Method: Composition-based stats.
Identities = 45/289 (15%), Positives = 98/289 (33%), Gaps = 34/289 (11%)
Query: 11 ATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASS 70
+ + +TT +++ + + AVV + +R V ++T+ +
Sbjct: 2 DLQNLITLTTGIALLTCVLAVVGVHSYATGRAQRQALVD---------RLTATGQIPIVG 52
Query: 71 RLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLIL 130
R R + R L+ + +L A G + + + +
Sbjct: 53 RRRHFPTLDRR-------LRRTTFGRKLELRLAATGL--DVTPGEFFAA------MLAAV 97
Query: 131 GIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLL 190
+W+ G L + + G +G A +++ QKR P+ +L
Sbjct: 98 AGLWLVGQATLAPFFGP-------IAGLLGIWAALQFLNWQRQKRIEKFINQLPELARIL 150
Query: 191 LICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDC 250
++G+++ A+ AE++ P EE+ +L+ + A +R
Sbjct: 151 ANATQAGLALRTAIGMAAEELEA---PAGEELSKVANQLAVGASMDDALGELADRLPSRE 207
Query: 251 VRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLT 299
+ L+ S+R G + +LR L + E + +T
Sbjct: 208 LVVLVTTLVLSNRAGGQVVSALRNLTETLEERKETRREVRTQLSQVSMT 256
>gi|254168637|ref|ZP_04875480.1| Bacterial type II secretion system protein F domain
[Aciduliprofundum boonei T469]
gi|289595686|ref|YP_003482382.1| Type II secretion system F domain protein [Aciduliprofundum boonei
T469]
gi|197622471|gb|EDY35043.1| Bacterial type II secretion system protein F domain
[Aciduliprofundum boonei T469]
gi|289533473|gb|ADD07820.1| Type II secretion system F domain protein [Aciduliprofundum boonei
T469]
Length = 290
Score = 77.2 bits (189), Expect = 3e-12, Method: Composition-based stats.
Identities = 35/213 (16%), Positives = 84/213 (39%), Gaps = 11/213 (5%)
Query: 122 VVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKR 181
V I I I I Y K + + +++ P ++ L ++ ++
Sbjct: 10 VSAFIAAIFISIGIMLYLKKTNIFGLIPLDFIVIGTSAFLFGPGIY-DMLHTRKIKKMEE 68
Query: 182 AWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFEN 241
+PD L + G+++ ++ + G+ L++E+ +++S+ + A +
Sbjct: 69 RFPDFLRDVAESSRFGMTLADSIVVASS---GKYGALTDEIKRMASKISWGVPVKDALLS 125
Query: 242 FYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVP 301
F R + + T +I+S+ G +I D L ++ R +L E+ +
Sbjct: 126 FNERVKTPLIDRITAIIIKSNEAGGNIADVLSMVARNARESQLAAKERNIEMFTYGFVLL 185
Query: 302 MIIFFLPVLILVI-------IGPAILSIIDTMK 327
F I+++ +G A +++ ++ K
Sbjct: 186 TSFFVFLATIIILNNSFLPEMGKAGMAVEESFK 218
>gi|302553402|ref|ZP_07305744.1| integral membrane protein [Streptomyces viridochromogenes DSM
40736]
gi|302471020|gb|EFL34113.1| integral membrane protein [Streptomyces viridochromogenes DSM
40736]
Length = 307
Score = 77.2 bits (189), Expect = 3e-12, Method: Composition-based stats.
Identities = 44/312 (14%), Positives = 112/312 (35%), Gaps = 13/312 (4%)
Query: 19 TTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSK 78
T + I + I +L + + +++ I + +S + + + R + R
Sbjct: 3 LTMPLVVGAIIGLGIYALVRALMPSKRSAISQVARIDAMRARSSAYESARAEREKGRLGA 62
Query: 79 SLRNF---VKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILG-IIW 134
V + L+ ++ L E S L ++++ + L G ++
Sbjct: 63 LRAEVGLRVSEFYLQQGWEQRSLRADLA----VLERSWEKFLATKVLLGVAGLFFGPFLF 118
Query: 135 IFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICV 194
+ + + V +L + F P + + +++ ++R LDL+ + +
Sbjct: 119 AIVWTLGVGRSPIIPVWLALLFAAIFFFLPDLEVRRDAAEKRRDLRRVIGAYLDLVSMSL 178
Query: 195 ESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSF-LPNRQVAFENFYNRTQMDCVRN 253
G + +AL AE G + ++ + +++ ++ A ++ +++
Sbjct: 179 AGGRGLPEALMAAAEVSDGWA---NQRIRNALSDARITGVSQWQALGALGEELGVEELKD 235
Query: 254 ATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILV 313
+ +L G + +SL R L E E A + V ++ ++
Sbjct: 236 LSASLALVADDGAKVRESLASRAETMRHRELAEIEGSAGEKSQSMLVAQLLLCA-GFLVF 294
Query: 314 IIGPAILSIIDT 325
+I PA + +
Sbjct: 295 LIFPAAMRVFQV 306
>gi|295395664|ref|ZP_06805856.1| possible integral membrane protein [Brevibacterium mcbrellneri ATCC
49030]
gi|294971480|gb|EFG47363.1| possible integral membrane protein [Brevibacterium mcbrellneri ATCC
49030]
Length = 308
Score = 76.8 bits (188), Expect = 4e-12, Method: Composition-based stats.
Identities = 40/195 (20%), Positives = 73/195 (37%), Gaps = 17/195 (8%)
Query: 96 ENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVIL 155
+ + +L A RS S+ LL+ L+ ++F+IL Y L +
Sbjct: 64 DKLSQQLIQANLRSITSIEYLLIALLITAVVFIIL-----------NRYIAILYAFLLSA 112
Query: 156 IGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQS 215
+ GF + L +++++ + P+ ++ +G+SI AL A ++
Sbjct: 113 LLLFGFW---KVLDVLKERQRAKFFQQLPEFARIMANSTGAGLSIHTALGVAASELPD-- 167
Query: 216 VPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVL 275
P S E EL +A E R + L+ + R G S+ SLR +
Sbjct: 168 -PASREFSALKRELEIGTPLDIALERMSERISGRDLDVLVSTLVIAQRSGGSLISSLRNM 226
Query: 276 VSETRSERLMEAEKK 290
+ + E K
Sbjct: 227 SDTLEFRKETKREVK 241
>gi|153833200|ref|ZP_01985867.1| TadB [Vibrio harveyi HY01]
gi|156977405|ref|YP_001448311.1| Flp pilus assembly protein TadB [Vibrio harveyi ATCC BAA-1116]
gi|148870471|gb|EDL69386.1| TadB [Vibrio harveyi HY01]
gi|156528999|gb|ABU74084.1| hypothetical protein VIBHAR_06192 [Vibrio harveyi ATCC BAA-1116]
Length = 300
Score = 76.8 bits (188), Expect = 4e-12, Method: Composition-based stats.
Identities = 42/202 (20%), Positives = 80/202 (39%), Gaps = 14/202 (6%)
Query: 117 LVVRLVVPIIFLILGII---WIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQ 173
L R + I I G + W F LL L +G +L+ G+ LV
Sbjct: 66 LGPRSSLYIALYITGSLIVSWYFVVKLLLMSSIWLTLGLSVLLTLFGY-------RYLVT 118
Query: 174 KRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLP 233
+R+ + +PDAL++L+ V +G S+ QA+ V + + + E L L
Sbjct: 119 RRRRDFENTFPDALNILMSAVTAGDSLMQAISYVGDVMDNS---IGREFKLMGDRLKLGE 175
Query: 234 NRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAAS 293
+ +V + T L + G + L L+ R +E +K A +
Sbjct: 176 SPEVVLQRSCKNYPYPEFLFFTVTLRANIARGGQLKGVLARLIRVLVDARTLEKKKMAMT 235
Query: 294 LGPKLTVPMIIFFLPVLILVII 315
+++ ++ P++ ++I+
Sbjct: 236 SEARISAKIVAAI-PLIFMIIL 256
>gi|226325182|ref|ZP_03800700.1| hypothetical protein COPCOM_02974 [Coprococcus comes ATCC 27758]
gi|225206530|gb|EEG88884.1| hypothetical protein COPCOM_02974 [Coprococcus comes ATCC 27758]
Length = 301
Score = 76.8 bits (188), Expect = 4e-12, Method: Composition-based stats.
Identities = 33/173 (19%), Positives = 68/173 (39%), Gaps = 7/173 (4%)
Query: 146 FQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALR 205
F I +G +W+ + + R++ +L ++ + +G SI++ALR
Sbjct: 92 FMALGLIGIGFALIGPLIAELWVRSRGKSRKARFDEQLARSLPMVAENMRAGSSIERALR 151
Query: 206 RVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYG 265
V E+ PL E+L + + A ++ RT + A+ G
Sbjct: 152 SVGEN---SDDPLKSELLACAGAMQIDGDIVAALDDMAKRTGSKDLVLLQAAVASHKEVG 208
Query: 266 TSIGDSLRVLVSETRS----ERLMEAEKKAASLGPKLTVPMIIFFLPVLILVI 314
S+ DSL + + R +E+E + K + M++ ++++ I
Sbjct: 209 GSLADSLERIGDTIDARLSLRRHIESETSSVIASMKALIVMLLILFAIIMVGI 261
>gi|291437533|ref|ZP_06576923.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672]
gi|291340428|gb|EFE67384.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672]
Length = 312
Score = 76.8 bits (188), Expect = 4e-12, Method: Composition-based stats.
Identities = 45/287 (15%), Positives = 98/287 (34%), Gaps = 34/287 (11%)
Query: 13 ELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRL 72
+ + +TT +++ + + AVV + +R V ++T+ + R
Sbjct: 2 QNLITLTTGIALLTCVLAVVGVHSYATGRAQRQALVD---------RLTATGQIPIVGRR 52
Query: 73 RTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGI 132
R + R L+ + +L A G + + + +
Sbjct: 53 RHFPTLDRR-------LRRTTFGRKLELRLAATGL--DVTPGEFFAA------MLAAVAG 97
Query: 133 IWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLI 192
+W+ G L + + G +G A +++ QKR P+ +L
Sbjct: 98 LWLVGQATLAPFFGP-------IAGLLGIWAALQFLNWQRQKRIEKFINQLPELARILAN 150
Query: 193 CVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVR 252
++G+++ A+ AE++ P EE+ +L+ + A +R +
Sbjct: 151 ATQAGLALRTAIGMAAEELEA---PAGEELSKVANQLAVGASMDDALGELADRLPSRELV 207
Query: 253 NATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLT 299
L+ S+R G + +LR L + E + +T
Sbjct: 208 VLVTTLVLSNRAGGQVVSALRNLTETLEERKETRREVRTQLSQVSMT 254
>gi|170692560|ref|ZP_02883722.1| type II secretion system protein [Burkholderia graminis C4D1M]
gi|170142216|gb|EDT10382.1| type II secretion system protein [Burkholderia graminis C4D1M]
Length = 327
Score = 76.8 bits (188), Expect = 5e-12, Method: Composition-based stats.
Identities = 28/155 (18%), Positives = 63/155 (40%), Gaps = 3/155 (1%)
Query: 145 PFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQAL 204
P Q+ +L P++ + +KR ++R P+A D++ + +G S AL
Sbjct: 118 PVQVPTLVTVLAAVAALAFPTLRMLRARRKRLRVLERQLPEAADMISRALRAGHSFSSAL 177
Query: 205 RRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRY 264
+ + P++ E + E+++ A N R + +R A++
Sbjct: 178 GMLGSEFAE---PMAGEFRIVFDEINYGVTLNEALLNLATRVPVGDLRYFVIAVLIQRET 234
Query: 265 GTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLT 299
G ++ + L + S R+ + + + S +L+
Sbjct: 235 GGNLAEILDSIASLVRARLQLFDKVRVLSAEGRLS 269
>gi|91775992|ref|YP_545748.1| type II secretion system protein [Methylobacillus flagellatus KT]
gi|91709979|gb|ABE49907.1| type II secretion system protein [Methylobacillus flagellatus KT]
Length = 303
Score = 76.8 bits (188), Expect = 5e-12, Method: Composition-based stats.
Identities = 39/201 (19%), Positives = 80/201 (39%), Gaps = 11/201 (5%)
Query: 126 IFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPD 185
+ G++ +F + +Q + V+L P + +Q+RQ I P
Sbjct: 80 VAFGAGLLLLFAFANSYMEAWQAGLCIVVLTAIFLVVIPYI----RLQRRQRIIVTQIPL 135
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
+D + + +G S++ A+R V ED+ +PL + + A +
Sbjct: 136 FIDQVSRALSTGKSVEGAVRSVTEDMQ---MPLRAVLDRVVRATDLGAGFADAMQKAAEL 192
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
+ + A+ S YG+S + L+ +V R + + E A + K+T ++
Sbjct: 193 HHIKELGLIALAIRISSNYGSSPQEMLKSIVQMIRQQEQAQRELAAMTGETKMTA-WVLS 251
Query: 306 FLPVLIL---VIIGPAILSII 323
P+LI+ I P + ++
Sbjct: 252 LTPLLIVGYMFIANPGYIDMM 272
>gi|291459838|ref|ZP_06599228.1| putative bacterial type II secretion system protein F domain
protein [Oribacterium sp. oral taxon 078 str. F0262]
gi|291417628|gb|EFE91347.1| putative bacterial type II secretion system protein F domain
protein [Oribacterium sp. oral taxon 078 str. F0262]
Length = 285
Score = 76.5 bits (187), Expect = 5e-12, Method: Composition-based stats.
Identities = 39/207 (18%), Positives = 70/207 (33%), Gaps = 6/207 (2%)
Query: 99 VNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGY 158
K +AA + ++ + I + L Y +G I +
Sbjct: 65 RLKKQAALIYGPQYADYYANLQWAMGITLVHLISAVTCIYAAWQNSGTTFLIGMFIALLA 124
Query: 159 VGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPL 218
+ ++ N + KR + + P+ + + I V SG+ + A R + E G L
Sbjct: 125 GVYAVENM--HNELSKRTADCELELPEVVSTMAILVNSGMVLRDAWRMIGESSEGAIYKL 182
Query: 219 SEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTS-IGDSLRVLVS 277
E + + A F T + T AL+QS G S + L S
Sbjct: 183 MRE---AGENMQNGYSDADAILLFGRATDSPEIIKFTSALLQSMEKGGSELPLFLAKESS 239
Query: 278 ETRSERLMEAEKKAASLGPKLTVPMII 304
E S + + + KL P+++
Sbjct: 240 ELWSSKRQKTLQLGEKASAKLLAPIML 266
>gi|328884728|emb|CCA57967.1| putative integral membrane protein [Streptomyces venezuelae ATCC
10712]
Length = 315
Score = 76.5 bits (187), Expect = 5e-12, Method: Composition-based stats.
Identities = 28/175 (16%), Positives = 61/175 (34%), Gaps = 8/175 (4%)
Query: 126 IFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPD 185
+ L + ++ + PF + G +G ++ QKR P+
Sbjct: 92 VALAATVAVLWVVGQAALSPFFGPI-----CGLLGIWVAMGYLGWQRQKRIEKFINQLPE 146
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
+L ++G+++ AL A+++ P +E+ +L+ + A R
Sbjct: 147 LSRILANATQAGLALRMALSLAADEMEA---PAGDELEKVAQQLAVGTSLDDALGELAER 203
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV 300
+ L+ ++R G ++ SLR L + E + +T
Sbjct: 204 LPSRELVVLVTTLVLANRAGGTVVSSLRNLTETLEERKETRREVRTQLSQVSMTA 258
>gi|238793625|ref|ZP_04637248.1| Type II secretion system protein F domain protein [Yersinia
intermedia ATCC 29909]
gi|238727040|gb|EEQ18571.1| Type II secretion system protein F domain protein [Yersinia
intermedia ATCC 29909]
Length = 293
Score = 76.5 bits (187), Expect = 5e-12, Method: Composition-based stats.
Identities = 34/198 (17%), Positives = 79/198 (39%), Gaps = 5/198 (2%)
Query: 130 LGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDL 189
+ + + + + ++++ ++ F I + + KR +P+ L +
Sbjct: 69 IAVPIGYAICIYIINKTWFGINILVILPFILFSIIFFQIRFPRKNNHTIFKRDFPEVLLM 128
Query: 190 LLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMD 249
+ + SG SI+Q L R +++GG PL +E+ L L+ + + F + Y R
Sbjct: 129 INMAASSGTSINQVLERCGKEVGG---PLGDELSLICRRLNVGESPETVFYDAYQRFHYP 185
Query: 250 CVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPM--IIFFL 307
++ + + G + + L + E +K + +++V + II F+
Sbjct: 186 EFYFLITIILLNLQQGGQLRELTSRLSQVITKNKTSEQKKAVMTAQTRMSVNILSIIPFV 245
Query: 308 PVLILVIIGPAILSIIDT 325
L L + P + +
Sbjct: 246 FSLFLYFMDPTAIESMWN 263
>gi|297202076|ref|ZP_06919473.1| integral membrane protein [Streptomyces sviceus ATCC 29083]
gi|297148029|gb|EDY58318.2| integral membrane protein [Streptomyces sviceus ATCC 29083]
Length = 314
Score = 76.5 bits (187), Expect = 5e-12, Method: Composition-based stats.
Identities = 32/171 (18%), Positives = 62/171 (36%), Gaps = 10/171 (5%)
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
++G +W+ G L + L G G A +++ QKR P+
Sbjct: 96 LVGGLWLIGQAALAPFFGP-------LAGLAGVWAAVQFLNWQRQKRIEKFINQLPELAR 148
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
+L +G+++ A+ AE++ P EE+ +L+ + A + R
Sbjct: 149 ILANATHAGLALRTAIGMAAEELEA---PAGEELANVANQLAVGVPMEDALDEMAKRLPS 205
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLT 299
+ L+ S+R G + +LR L + E + +T
Sbjct: 206 RELVVLVTTLVLSNRAGGQVVSALRNLTETLEERKETRREVRTQLSQVNMT 256
>gi|296131924|ref|YP_003639171.1| Type II secretion system F domain protein [Thermincola sp. JR]
gi|296030502|gb|ADG81270.1| Type II secretion system F domain protein [Thermincola potens JR]
Length = 313
Score = 76.5 bits (187), Expect = 5e-12, Method: Composition-based stats.
Identities = 60/319 (18%), Positives = 114/319 (35%), Gaps = 44/319 (13%)
Query: 13 ELAVAITTAVSIFSLIYAVV---IPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSAS 69
+ + +A ++F LI+ + + + L K +K + VE +K++ +SL
Sbjct: 4 SWLLLVVSAGAVFCLIWGLYCLGVYYTNNQRLWKTLKPIMVE----KKRERSSL------ 53
Query: 70 SRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLI 129
N + L L+ AG + S + ++F
Sbjct: 54 -------FLWFGNRYDRTESGRRLA-----ALLKNAGIGIKPSEY------FALLVVFFG 95
Query: 130 LGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDL 189
L + L+ F + + L+ VG + ++ QK ++ R PD L
Sbjct: 96 LS---YYLAHNFLDLFFPIDIICAYLLVRVG---STKFLKVKQQKLVDALNRQLPDICRL 149
Query: 190 LLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMD 249
L V++G++I Q + VA + Q P +L + AF +
Sbjct: 150 LSSSVKAGLNIQQGIELVARE---QKPPAQTVFTELAHQLQLGNTLENAFSHIMEELPSK 206
Query: 250 CVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPV 309
+R +I + G ++ L + + + E K + K V MI+ F+P+
Sbjct: 207 ELRLMGSTIIVQRKAGGNMARVLEEMSQTLENRDRVNQELKGKTAETKF-VAMILPFMPI 265
Query: 310 ---LILVIIGPAILSIIDT 325
L+L I P + T
Sbjct: 266 VAGLVLNISFPGFFRPLFT 284
>gi|308176985|ref|YP_003916391.1| type II secretion system protein F [Arthrobacter arilaitensis
Re117]
gi|307744448|emb|CBT75420.1| putative type II secretion system protein F [Arthrobacter
arilaitensis Re117]
Length = 283
Score = 76.5 bits (187), Expect = 5e-12, Method: Composition-based stats.
Identities = 45/228 (19%), Positives = 89/228 (39%), Gaps = 18/228 (7%)
Query: 90 KAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLR 149
K+ I N L AG + + +V+ +V I F ++ +
Sbjct: 27 KSRNRSSAIKNALLHAGM-GNLAPSKFIVICVVCGITFTLITLA------------LTAS 73
Query: 150 VGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAE 209
++ G AP V++ + KRQ++++ WP+ +D L + +G+S+ +AL ++A
Sbjct: 74 WLFALVFCIFGSFAPWVYLRHQAAKRQAALQEQWPEVVDHLRSAIRAGLSLPEALSQLAM 133
Query: 210 DIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRY-GTSI 268
PL + L + N VA + R L + GT +
Sbjct: 134 VGPQILRPLFRDFAL---DYRATANFAVALDQLGERLADPVADKILTTLRITREVGGTDL 190
Query: 269 GDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIG 316
G +L L + R + + AA ++ + P ++L+++G
Sbjct: 191 GHTLTTLSAFLRDDVRTRG-ELAARQSWIVSAARLAVAAPWILLLVLG 237
>gi|269216231|ref|ZP_06160085.1| putative TadC protein [Slackia exigua ATCC 700122]
gi|269130490|gb|EEZ61568.1| putative TadC protein [Slackia exigua ATCC 700122]
Length = 212
Score = 76.5 bits (187), Expect = 5e-12, Method: Composition-based stats.
Identities = 25/145 (17%), Positives = 62/145 (42%), Gaps = 2/145 (1%)
Query: 178 SIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQV 237
I+R + D + + + +G+S D A + + + + + + R
Sbjct: 69 RIERHASELFDAVSLGMRAGLSFDAAFALYCTRFDDELAGVCRDAHRAWS--TGVLTRAE 126
Query: 238 AFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPK 297
A + ++ + + + ++ R+G+ +G L L E+ + E++ A +
Sbjct: 127 ALASIASKARSPTLERFAANVERNVRFGSPMGRMLDALSRESSGAYRTKIEERVAKAPIE 186
Query: 298 LTVPMIIFFLPVLILVIIGPAILSI 322
+ +P LP +++VI+GP +L +
Sbjct: 187 MLIPTATLILPAMLIVILGPVLLDL 211
>gi|119773847|ref|YP_926587.1| putative type II secretion system protein F [Shewanella amazonensis
SB2B]
gi|119766347|gb|ABL98917.1| putative type II secretion system protein F [Shewanella amazonensis
SB2B]
Length = 283
Score = 76.5 bits (187), Expect = 6e-12, Method: Composition-based stats.
Identities = 41/213 (19%), Positives = 84/213 (39%), Gaps = 9/213 (4%)
Query: 108 RSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVG-----AVILIGYVGFC 162
R + L +F+ G +++ L+ PF R+ IL+ +
Sbjct: 32 RYRETFTTSASTNLADMFLFIEPGQLFLLNVLTLVSVPFFGRLFFGSWVVGILLSVLLAL 91
Query: 163 APSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEM 222
P L Q+R+ PDAL+++ +++G ++ A+ +A+++ P+ +E
Sbjct: 92 LPRYLYRYLHQRRRRRFVHQLPDALNMIAASMQAGANVTNAIEFMADEM---DAPIKQEF 148
Query: 223 LLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSE 282
L + E A +N Y R + + S G ++ + L L R +
Sbjct: 149 QLFLREQRLGVEFNTALDNVYKRIPESEFQLVVAGMQISRDVGGNLAEVLVRLSETLRKK 208
Query: 283 RLMEAEKKAASLGPKLTVPMIIFFLPVLILVII 315
ME + + + K+ +++ LPV I +
Sbjct: 209 IEMEGKITSLTSQGKMQG-IVMTLLPVAIGFTL 240
>gi|154151443|ref|YP_001405061.1| type II secretion system protein [Candidatus Methanoregula boonei
6A8]
gi|153999995|gb|ABS56418.1| type II secretion system protein [Methanoregula boonei 6A8]
Length = 349
Score = 76.5 bits (187), Expect = 6e-12, Method: Composition-based stats.
Identities = 36/216 (16%), Positives = 78/216 (36%), Gaps = 7/216 (3%)
Query: 111 YSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISN 170
+L+V + + +I + G I + + + + + P +
Sbjct: 67 EKPENILIVCVPLSLIVFVGGFISMVKMYGISVLFNSTVIDDFAVAAVLISIIPVAVLDF 126
Query: 171 LVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELS 230
Q R +++ A P+ L +SG+++ A+ VA G + LS + E+S
Sbjct: 127 REQSRMRNLETALPNFFRDLAGMNDSGMTLPNAVHLVA---GAEYGTLSPHIRKLDNEMS 183
Query: 231 FLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKK 290
+ A F + + ++ + G I + LR ++T + E++
Sbjct: 184 WGVGFVEALYRFGKSLGTPLADRSVDLIAKASKAGGDISEVLRAAANDTFEVVNLAQERR 243
Query: 291 AASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
L +I+ + L +I + S + TM
Sbjct: 244 NN----MLIYVIIVIVSFTVFLFVIAVLVSSFLSTM 275
>gi|149909543|ref|ZP_01898197.1| TadB-like protein involved in pilus formation and/or
proteinsecretion [Moritella sp. PE36]
gi|149807448|gb|EDM67399.1| TadB-like protein involved in pilus formation and/or
proteinsecretion [Moritella sp. PE36]
Length = 305
Score = 76.5 bits (187), Expect = 6e-12, Method: Composition-based stats.
Identities = 37/195 (18%), Positives = 73/195 (37%), Gaps = 7/195 (3%)
Query: 121 LVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIK 180
+ + L I+ IF + + ++ GF W+ +K +
Sbjct: 75 FALAKVILFAFILAIFAMNINSSFIRGSLPIVIVSFEIFGFIFGYFWLQRREKK---QFE 131
Query: 181 RAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFE 240
A+P+AL++L V SG SI A+ V + G + +E L L + F+
Sbjct: 132 EAFPEALNMLTSAVSSGESIMHAIIFVGTALDG---EVGKEFKLMGDRLRLGDSPDSVFK 188
Query: 241 NFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV 300
NR + L + R+G + + + L R +E +K A + + +
Sbjct: 189 KSCNRFPYPAFQFFVITLRANMRHGGQLKEIMTRLNRLMFDARAIEKKKFALTSEARASA 248
Query: 301 PMIIFFLPVLILVII 315
++ P + L ++
Sbjct: 249 KIVGAI-PFVFLFLL 262
>gi|255505483|ref|ZP_05346368.3| putative bacterial type II secretion system protein F domain
protein [Bryantella formatexigens DSM 14469]
gi|255267486|gb|EET60691.1| putative bacterial type II secretion system protein F domain
protein [Bryantella formatexigens DSM 14469]
Length = 490
Score = 76.1 bits (186), Expect = 6e-12, Method: Composition-based stats.
Identities = 30/153 (19%), Positives = 60/153 (39%), Gaps = 5/153 (3%)
Query: 150 VGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAE 209
+G +L + A + + R+ + +PD L L + + +G+++ A ++A
Sbjct: 314 LGITVLAAVCVWIARNQERQQAQEHRRRQMLMDYPDLLFKLSMLLNAGLTMQNAFFKIAL 373
Query: 210 DIGGQSVP----LSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYG 265
+ + P EEML + E+ ++ENF R + L + + G
Sbjct: 374 EYRDRETPEVRFAYEEMLTSYYEMQSGVPEARSYENFGRRCGVGSYNKLGTMLSANLQKG 433
Query: 266 T-SIGDSLRVLVSETRSERLMEAEKKAASLGPK 297
+ + L+ + + ER A K G K
Sbjct: 434 SQGLAKLLQEEAAFSMEERSQMARKLGEEAGTK 466
>gi|27378606|ref|NP_770135.1| hypothetical protein blr3495 [Bradyrhizobium japonicum USDA 110]
gi|27351754|dbj|BAC48760.1| blr3495 [Bradyrhizobium japonicum USDA 110]
Length = 338
Score = 76.1 bits (186), Expect = 7e-12, Method: Composition-based stats.
Identities = 35/178 (19%), Positives = 64/178 (35%), Gaps = 15/178 (8%)
Query: 108 RSEYSLNILLVVRLVVPIIFLILGIIWI---FGYDKLLEYPFQLRVGAVILIGYVGFCAP 164
S NI ++V F ++ GY L ++ G G+
Sbjct: 96 YSPEIPNIWHPAYVLVAGAFAGAATLYAISQLGYSILYGGIAAAIAAISVMRGLFGW--- 152
Query: 165 SVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLL 224
++ + R PDA+ L+ V SG+ + +A R +A ++ P + + +
Sbjct: 153 ------QQRRVALQLFRQLPDAIQLVTSTVRSGLPVHEAFRALAREM---PQPTAGQFAI 203
Query: 225 TIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSE 282
E++ A E Y RTQ+ L + G S+ ++L+ L R
Sbjct: 204 VCNEVNLGRPPAEAVEGVYRRTQVAEYAMFAVTLAVQLKSGGSLAETLQNLGDTVRQR 261
>gi|254486637|ref|ZP_05099842.1| type II secretion system protein [Roseobacter sp. GAI101]
gi|214043506|gb|EEB84144.1| type II secretion system protein [Roseobacter sp. GAI101]
Length = 317
Score = 76.1 bits (186), Expect = 7e-12, Method: Composition-based stats.
Identities = 39/257 (15%), Positives = 87/257 (33%), Gaps = 6/257 (2%)
Query: 60 ITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVV 119
+ Q+ SRL D+ + L + V + R F L
Sbjct: 25 LADRQRHRHISRLLRADTTEQPPLAQSLKPRKRAVAQPTNPLERVIAFIERQLDQTSLGF 84
Query: 120 RLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSI 179
+ ++ + ++ ++ L L + + V +S + +++
Sbjct: 85 GVGEVLVQAGITLLGLYAVAVLAVGIHPLAALPLAAMLTVALLLS--ILSIAQSRYKATF 142
Query: 180 KRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAF 239
P+ALD+ + +G + ++ V ++ G P+ E E+
Sbjct: 143 AADLPEALDIFARGLRAGRPVTDSMAIVVDNAKG---PILREFTRCHDEVRMGNTLPETL 199
Query: 240 ENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLT 299
E R + V A G ++ +++ L ++ R R + + +A S + +
Sbjct: 200 ERLSARLPLPEVTFFAVATALQAETGGNLIETMENLATQLRERRKLRKKARALSSEARAS 259
Query: 300 VPMIIFFLPVLILVIIG 316
I+ LP + V+I
Sbjct: 260 AV-ILAALPFAVAVLIA 275
>gi|217978830|ref|YP_002362977.1| type II secretion system protein [Methylocella silvestris BL2]
gi|217504206|gb|ACK51615.1| type II secretion system protein [Methylocella silvestris BL2]
Length = 319
Score = 76.1 bits (186), Expect = 7e-12, Method: Composition-based stats.
Identities = 29/151 (19%), Positives = 61/151 (40%), Gaps = 3/151 (1%)
Query: 150 VGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAE 209
+ AV + + + P + + +K + +PDA+D + + +G+ I A+R +A
Sbjct: 113 LPAVGISIFASYFGPRLVLVRRQRKTERQFMDLFPDAVDTVARMIRAGLPITAAVRTIAS 172
Query: 210 DIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIG 269
+ G P+S + EL + + + + R A+ G ++
Sbjct: 173 EAGA---PISTVFAMIADELKIGVPIEQTLDASSKQIGLADFRFFAVAVALQYSTGGNLM 229
Query: 270 DSLRVLVSETRSERLMEAEKKAASLGPKLTV 300
+L L R R + + KAA+ ++T
Sbjct: 230 ATLEALSQIVRKRRALRLKAKAATGEIRITA 260
>gi|254173284|ref|ZP_04879957.1| Bacterial type II secretion system protein F domain [Thermococcus
sp. AM4]
gi|214032693|gb|EEB73522.1| Bacterial type II secretion system protein F domain [Thermococcus
sp. AM4]
Length = 303
Score = 76.1 bits (186), Expect = 7e-12, Method: Composition-based stats.
Identities = 42/221 (19%), Positives = 89/221 (40%), Gaps = 7/221 (3%)
Query: 98 IVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIW-IFGYDKLLEYPFQLRVGAVILI 156
I+ ++ A + Y L I + I +LI+ I+ + +L L A ++
Sbjct: 15 ILERILPAKWVKRYELFIYSAGIEFLAIEYLIISILLSVIFAVVVLILSNALYAVATLVA 74
Query: 157 GYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSV 216
+VG + + KR +++ PDA L + +GIS +AL + +
Sbjct: 75 VFVGMAF--AYPYWRISKRLEEMEKNLPDAFFYLASSLRAGISFSEALEDLTT---AKFG 129
Query: 217 PLSEEMLLTIAELSFLPNRQVAFENFYNRTQ-MDCVRNATQALIQSDRYGTSIGDSLRVL 275
L+EE + E+ + A R + + + +I++ G + D L +
Sbjct: 130 ALTEEFKRVVGEIRKGRSTVEALRVMALRNRKSPVIYRSLMIIIEALERGAPMSDVLVYV 189
Query: 276 VSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIG 316
++ R ++ E+KA++ + + F+ I+ +G
Sbjct: 190 ANDVREILRIKQERKASTGMQMMFFIITSGFVGPAIIGTVG 230
>gi|297159257|gb|ADI08969.1| hypothetical protein SBI_05849 [Streptomyces bingchenggensis BCW-1]
Length = 268
Score = 76.1 bits (186), Expect = 7e-12, Method: Composition-based stats.
Identities = 38/194 (19%), Positives = 72/194 (37%), Gaps = 14/194 (7%)
Query: 134 WIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNL--------VQKRQSSIKRAWPD 185
W + L+ + ++G W + ++ R P
Sbjct: 70 WAWAAGALIGCLVLVGGPLGCVLGLAAGYGARRWRRHRQASGGRRSGKRANDGAARQLPL 129
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
A DLL C+E+G +A V +GG P+ E + AEL A+
Sbjct: 130 AADLLTACLEAGAGPYKAAEAVGRSLGG---PIGERLAQAAAELRLGGEPSAAWGRMGA- 185
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
+ +AL ++ G +S+ L ++ R+E+ +A+K+ T P+
Sbjct: 186 --LPGAHGLARALERAGTTGAPAVESMSRLAADCRAEQGRQADKRVERATVLATAPLGAC 243
Query: 306 FLPVLILVIIGPAI 319
+LP +L+ + P +
Sbjct: 244 YLPAFLLIGVAPVM 257
>gi|319951072|ref|ZP_08024925.1| type II secretion system integral membrane subunit [Dietzia
cinnamea P4]
gi|319435232|gb|EFV90499.1| type II secretion system integral membrane subunit [Dietzia
cinnamea P4]
Length = 314
Score = 76.1 bits (186), Expect = 8e-12, Method: Composition-based stats.
Identities = 47/225 (20%), Positives = 87/225 (38%), Gaps = 20/225 (8%)
Query: 101 KLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVG 160
+L AG R L + + +V I+ LG+I I + V +L G
Sbjct: 76 QLERAGVRMG--LQDYVFLVVVATIVAFALGLILI---------GPLMGVFLALLAPAGG 124
Query: 161 FCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSE 220
+ + L +R+++ D+L L+ + +G S+ QAL VA + P SE
Sbjct: 125 YVL----LQVLAARRRAAFADQLDDSLQLMASSLRAGHSLLQALASVAREAE---QPTSE 177
Query: 221 EMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETR 280
E I E A E NR TQA+ + G ++ + L + R
Sbjct: 178 EFARIINETRVGRELAPALEETANRMGSQDFVWVTQAIAINREVGGNLAEVLDGVGHTIR 237
Query: 281 SERLMEAEKKAASLGPKLTVPMIIFFLPVL--ILVIIGPAILSII 323
+ + +A + KL+ +++ + L + P+ + ++
Sbjct: 238 ERNQIRRQVQALAAEGKLSAYVLMALPFGIGGFLFVSNPSYIGVL 282
>gi|307353960|ref|YP_003895011.1| type II secretion system F domain-containing protein [Methanoplanus
petrolearius DSM 11571]
gi|307157193|gb|ADN36573.1| Type II secretion system F domain protein [Methanoplanus
petrolearius DSM 11571]
Length = 336
Score = 75.7 bits (185), Expect = 8e-12, Method: Composition-based stats.
Identities = 32/213 (15%), Positives = 84/213 (39%), Gaps = 4/213 (1%)
Query: 111 YSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISN 170
+L+V + ++F + G I + + + + +I + P ++
Sbjct: 51 EKPENILIVSAPIALLFFVFGFISVISNYGIYSLLNSTLIDDIFVITILIMLIPLAFLDT 110
Query: 171 LVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELS 230
R +I+ A P+ + ESG+++ A+ V++ G L+ + E+S
Sbjct: 111 KESMRTRNIEVALPNFFRDVAGMNESGMTLPNAIHTVSD---GDYGTLTPYIKKLDNEVS 167
Query: 231 FLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKK 290
+ A F R + + + ++ + G + + LR +++ + E++
Sbjct: 168 WNIPFINAIHRFGERLGTPLAKRSVDLIAKASQAGGDVSEVLRAAANDSYEFVSLATERR 227
Query: 291 AASLGPKLTVPMIIFFLPVLILVIIGPAILSII 323
L + + ++ F + +L++ I+ L +
Sbjct: 228 NNML-IYIVIVLVSFLVFLLVIAIMTSTFLDTM 259
>gi|333025169|ref|ZP_08453233.1| putative integral membrane protein [Streptomyces sp. Tu6071]
gi|332745021|gb|EGJ75462.1| putative integral membrane protein [Streptomyces sp. Tu6071]
Length = 294
Score = 75.7 bits (185), Expect = 9e-12, Method: Composition-based stats.
Identities = 35/218 (16%), Positives = 80/218 (36%), Gaps = 6/218 (2%)
Query: 110 EYSLNILLVVRLVVPIIFLILG-IIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWI 168
+ S L ++++ + L+ G ++ + + V +L G + F P + I
Sbjct: 81 DRSWERFLATKVLLGVAGLVFGPAVFAIVAVLGIGRSPLIPVWLALLCGILFFFLPDLEI 140
Query: 169 SNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAE 228
Q ++ ++R LDL+ + + G + +AL AE G + S + + +
Sbjct: 141 RRDAQDKRRDLRRVIGAYLDLVAMSLAGGRGLPEALLAAAEVSDGWA---SRRIRDALQD 197
Query: 229 LSF-LPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEA 287
+ A ++ ++ + +L G + +SL R L E
Sbjct: 198 ARITGHTQWYALGRLGEELGIEELKELSSSLALVADDGAKVRESLASRAETMRHRELAEI 257
Query: 288 EKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDT 325
E A + + ++ ++ +I PA + +
Sbjct: 258 EGSAGEKSQSMLIAQLLLCA-GFLVFLIFPAAMRVFQM 294
>gi|251791987|ref|YP_003006707.1| TadB [Aggregatibacter aphrophilus NJ8700]
gi|247533374|gb|ACS96620.1| TadB [Aggregatibacter aphrophilus NJ8700]
Length = 294
Score = 75.7 bits (185), Expect = 9e-12, Method: Composition-based stats.
Identities = 42/216 (19%), Positives = 83/216 (38%), Gaps = 16/216 (7%)
Query: 106 GFRSEYSLNILLVV-----RLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVG 160
G ++ +L + L+ I+ L +F + + +L + + ++
Sbjct: 46 GIKNRVTLWYYYFIGGNKKNLIRNIVISCLAFFALFIVNVAYVHVDRLVFCLLFGVAFI- 104
Query: 161 FCAPSVWISNLVQKR-QSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLS 219
+++ L Q R + + +P+ + ++ SG + QAL R +D+ GQ L
Sbjct: 105 -----LFVWKLGQHRNKKTFNAMFPEVIQIMNAAATSGAGLLQALERCGKDLTGQ---LG 156
Query: 220 EEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSET 279
EE LS + FE+ Y+R + + G I + + L
Sbjct: 157 EEFKSIHKRLSIGEDPMAVFEDSYSRYPYKEFYFFITIVRTNLNKGGQIREVISRLGRLI 216
Query: 280 RSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVII 315
ME +KKA + +++ MI+ LPV +
Sbjct: 217 ADSNKMEKKKKAMTSEARMSA-MIVACLPVGFFFFM 251
>gi|289424541|ref|ZP_06426324.1| type II secretion system F domain protein [Propionibacterium acnes
SK187]
gi|289428815|ref|ZP_06430495.1| type II secretion system F domain protein [Propionibacterium acnes
J165]
gi|295129802|ref|YP_003580465.1| type II secretion system F domain protein [Propionibacterium acnes
SK137]
gi|289155238|gb|EFD03920.1| type II secretion system F domain protein [Propionibacterium acnes
SK187]
gi|289157816|gb|EFD06039.1| type II secretion system F domain protein [Propionibacterium acnes
J165]
gi|291377230|gb|ADE01085.1| type II secretion system F domain protein [Propionibacterium acnes
SK137]
gi|313814294|gb|EFS52008.1| type II secretion system F domain protein [Propionibacterium acnes
HL025PA1]
gi|313834346|gb|EFS72060.1| type II secretion system F domain protein [Propionibacterium acnes
HL056PA1]
gi|314974780|gb|EFT18875.1| type II secretion system F domain protein [Propionibacterium acnes
HL053PA1]
gi|314980264|gb|EFT24358.1| type II secretion system F domain protein [Propionibacterium acnes
HL072PA2]
gi|314985439|gb|EFT29531.1| type II secretion system F domain protein [Propionibacterium acnes
HL005PA1]
gi|314987403|gb|EFT31494.1| type II secretion system F domain protein [Propionibacterium acnes
HL005PA2]
gi|315082165|gb|EFT54141.1| type II secretion system F domain protein [Propionibacterium acnes
HL078PA1]
gi|315086398|gb|EFT58374.1| type II secretion system F domain protein [Propionibacterium acnes
HL002PA3]
gi|315097273|gb|EFT69249.1| type II secretion system F domain protein [Propionibacterium acnes
HL038PA1]
gi|315106264|gb|EFT78240.1| type II secretion system F domain protein [Propionibacterium acnes
HL030PA1]
gi|327445234|gb|EGE91888.1| type II secretion system F domain protein [Propionibacterium acnes
HL013PA2]
gi|327447319|gb|EGE93973.1| type II secretion system F domain protein [Propionibacterium acnes
HL043PA1]
gi|328758434|gb|EGF72050.1| type II secretion system F domain protein [Propionibacterium acnes
HL020PA1]
gi|332674641|gb|AEE71457.1| hypothetical protein PAZ_c02540 [Propionibacterium acnes 266]
Length = 249
Score = 75.7 bits (185), Expect = 9e-12, Method: Composition-based stats.
Identities = 40/196 (20%), Positives = 86/196 (43%), Gaps = 6/196 (3%)
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
++ G++ + +PF G +L+G V + S+ ++ + P+AL
Sbjct: 56 VLAGLVAACAVLIGVPWPFPAAAGLSVLVGTVMWWGSGRLESSGHRRMEQHRAAQLPEAL 115
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQ 247
+L +E+G+ + A+ VAE + G P +E++ + L+ A+ + +
Sbjct: 116 LMLSSAMEAGLPLRSAVTTVAESLEG---PCAEDLRRLASSLAAGVPDSRAWNDLAS--- 169
Query: 248 MDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFL 307
++ R+ Q + ++ G I + L ++ + + EKKA G P++ L
Sbjct: 170 VEVWRDPAQDVSRAVDSGEGISELLSAHAAQLQVAAAEKTEKKARKAGVDAIGPLVCCHL 229
Query: 308 PVLILVIIGPAILSII 323
P +LV + P I ++
Sbjct: 230 PAFLLVGVVPIIAGMV 245
>gi|269986708|gb|EEZ92988.1| type II secretion system protein [Candidatus Parvarchaeum
acidiphilum ARMAN-4]
Length = 298
Score = 75.7 bits (185), Expect = 1e-11, Method: Composition-based stats.
Identities = 40/231 (17%), Positives = 92/231 (39%), Gaps = 16/231 (6%)
Query: 97 NIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILI 156
+ L A +Y I + + + ++ L++G+ + + + +++ A++
Sbjct: 35 TLKQDLLQAAMDIDYLDYIAAGIVVALVLVGLMVGVSALVLLIAIKKNLLTIKIEAIL-- 92
Query: 157 GYVGFCAPSVWI-------SNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAE 209
+ F P V+ KR I+ A ++I V SG+ + AL VA
Sbjct: 93 PVLIFIVPGVYFFYFLNYPKLQAVKRTKLIEEQVVFATREIMIKVGSGVPVFNALLDVAN 152
Query: 210 DIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIG 269
G +S+E I E+ ++ A ++ R +R ++ + + G+ +
Sbjct: 153 ---GNYGVVSDEFKEAIEEIESGVPQEDALDHLARRVPSQSLRRTIDIMLNAIKSGSDVA 209
Query: 270 DSLRVLVSETRSERLMEAEKKAASLGPK-LTVPMIIFFLPVL---ILVIIG 316
+L ++ ++ + + A L P + +I +P L + +I+G
Sbjct: 210 GTLSLINDMLIKKQQSDMKSYAGELTPMSMAYMLISVVMPSLGMSVFIILG 260
>gi|313793203|gb|EFS41270.1| type II secretion system F domain protein [Propionibacterium acnes
HL110PA1]
gi|313802708|gb|EFS43926.1| type II secretion system F domain protein [Propionibacterium acnes
HL110PA2]
gi|314964615|gb|EFT08715.1| type II secretion system F domain protein [Propionibacterium acnes
HL082PA1]
gi|315078730|gb|EFT50756.1| type II secretion system F domain protein [Propionibacterium acnes
HL053PA2]
gi|327457152|gb|EGF03807.1| type II secretion system F domain protein [Propionibacterium acnes
HL092PA1]
Length = 249
Score = 75.7 bits (185), Expect = 1e-11, Method: Composition-based stats.
Identities = 40/196 (20%), Positives = 86/196 (43%), Gaps = 6/196 (3%)
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
++ G++ + +PF G +L+G V + S+ ++ + P+AL
Sbjct: 56 VLAGLVAACAVLIGVPWPFPAAAGLSVLVGTVMWWGSGRLESSGHRRMEQHRAAQLPEAL 115
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQ 247
+L +E+G+ + A+ VAE + G P +E++ + L+ A+ + +
Sbjct: 116 LMLSSAMEAGLPLRSAVTTVAESLEG---PCAEDLRRLASSLAAGVPDSRAWNDLAS--- 169
Query: 248 MDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFL 307
++ R+ Q + ++ G I + L ++ + + EKKA G P++ L
Sbjct: 170 VEVWRDPAQDVSRAVDSGEGISELLSAHAAQLQVAAAEKTEKKARKAGVDAIGPLVCCHL 229
Query: 308 PVLILVIIGPAILSII 323
P +LV + P I ++
Sbjct: 230 PAFLLVGVVPIIAGMV 245
>gi|323495641|ref|ZP_08100712.1| flp pilus assembly protein tadb [Vibrio sinaloensis DSM 21326]
gi|323319276|gb|EGA72216.1| flp pilus assembly protein tadb [Vibrio sinaloensis DSM 21326]
Length = 306
Score = 75.7 bits (185), Expect = 1e-11, Method: Composition-based stats.
Identities = 41/200 (20%), Positives = 79/200 (39%), Gaps = 10/200 (5%)
Query: 115 ILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQK 174
+L + + + +F L ++ + + + A+I+ +G W+ Q+
Sbjct: 70 MLQLGKFALLKVFAFLVVVAFVSFYANDTFIRVNSIYALIIGELIGVAVGMSWLE---QR 126
Query: 175 RQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPN 234
+Q + A+PDAL++L V SG S+ ++ V + + G + EE L +
Sbjct: 127 QQKEFEMAFPDALNMLASAVSSGESLMHSIMFVGKTLEGS---VGEEFKRMGERLQLGES 183
Query: 235 RQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKA--- 291
F+ NR + L + + G + D + L R +E +K A
Sbjct: 184 PDSVFKKSCNRFPYRSFQFFVITLRANMQRGGQLKDVITRLNRLMFDARAIEKKKYALTS 243
Query: 292 -ASLGPKLTVPMIIFFLPVL 310
A K+ + FFL +L
Sbjct: 244 EARTSAKIVAAIPFFFLFIL 263
>gi|148975966|ref|ZP_01812755.1| hypothetical Flp pilus assembly protein TadB [Vibrionales bacterium
SWAT-3]
gi|145964711|gb|EDK29964.1| hypothetical Flp pilus assembly protein TadB [Vibrionales bacterium
SWAT-3]
Length = 300
Score = 75.3 bits (184), Expect = 1e-11, Method: Composition-based stats.
Identities = 40/204 (19%), Positives = 79/204 (38%), Gaps = 14/204 (6%)
Query: 115 ILLVVRLVVPIIFLILGII---WIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNL 171
++L R + I I G + W D L ++ + G+ L
Sbjct: 64 MVLGPRSTLYIALYITGSLIASWYIVIDLLSMTNSWWVPVLAVIFSFFGY-------RFL 116
Query: 172 VQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSF 231
V +R+ + +PDAL++L+ V +G S+ QA+ V E + P+ E L L
Sbjct: 117 VTRRRRDFENTFPDALNILMSAVTAGDSLMQAISYVGEVMDN---PIGREFKLMGDRLKL 173
Query: 232 LPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKA 291
+ +V + T L + G + L L+ R +E +K A
Sbjct: 174 GESPEVVLKRSCKNYPYPEFLFFTVTLRANIARGGQLKGVLARLIRVLVDSRTLEKKKMA 233
Query: 292 ASLGPKLTVPMIIFFLPVLILVII 315
+ +++ ++ P++ ++I+
Sbjct: 234 MTSEARISAKIVAAI-PLVFMIIL 256
>gi|239943898|ref|ZP_04695835.1| putative integral membrane protein [Streptomyces roseosporus NRRL
15998]
gi|239990352|ref|ZP_04711016.1| putative integral membrane protein [Streptomyces roseosporus NRRL
11379]
gi|291447361|ref|ZP_06586751.1| integral membrane protein [Streptomyces roseosporus NRRL 15998]
gi|291350308|gb|EFE77212.1| integral membrane protein [Streptomyces roseosporus NRRL 15998]
Length = 314
Score = 74.9 bits (183), Expect = 1e-11, Method: Composition-based stats.
Identities = 30/169 (17%), Positives = 62/169 (36%), Gaps = 5/169 (2%)
Query: 122 VVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKR 181
+ P FL+ ++ + G + L + +G + +++ KR
Sbjct: 84 ITPGEFLVYAVVAMAGL--WMIASSMLAAFFGPVAALIGLWGTNAFLNWQRIKRTERFIN 141
Query: 182 AWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFEN 241
P+ +L ++G+++ +L AE++ P EE+ L+ + A
Sbjct: 142 QLPELSRILANATQAGLALRTSLSMAAEELEN---PAGEELARVARRLAVGEPLEDALSE 198
Query: 242 FYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKK 290
+R + L+ S+R G ++ SLR L + E K
Sbjct: 199 LTDRLPSRELVVLVTTLVLSNRAGGTVVSSLRNLTETLEERKETRREVK 247
>gi|310830508|ref|YP_003965609.1| hypothetical protein PPSC2_p0148 [Paenibacillus polymyxa SC2]
gi|309249975|gb|ADO59541.1| Putative uncharacterized protein [Paenibacillus polymyxa SC2]
Length = 292
Score = 74.9 bits (183), Expect = 1e-11, Method: Composition-based stats.
Identities = 41/299 (13%), Positives = 110/299 (36%), Gaps = 24/299 (8%)
Query: 24 IFSLIYAVVIPSLGSGELE--KRMKSVAVEREILRKQQITSLQKDSASSRL-RTRDSKSL 80
+F+ I+ V++ L M++ +V R+ L++ ++D+ S L T +
Sbjct: 4 VFAGIFLVLLFFFAKNILMMIFSMENYSVHRKRLKQLDFKRKKEDADVSELIDTVTKPVI 63
Query: 81 RNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDK 140
R+ K + + I ++L+ A + ++ + L++ ++ ++ ++ +
Sbjct: 64 RHVFSHFKPKRL---DQIESQLKMAKWDKHFTAIQYRALSLLLKVVGIVCFLVLV----- 115
Query: 141 LLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISI 200
+ + ++ V N R++ + +PD + + + + +
Sbjct: 116 ------KASLAIALIWAIVLIFGMDFLFMNSTNNRKAKLIADFPDFIRITEGYLTANVPF 169
Query: 201 DQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQ 260
+A+ + +G + P+ + ++ L + A + M +R +
Sbjct: 170 AKAVSECVKYVGDEWKPILQRFVVDCE----LKSLNEALDGLKRDVDMFEIREFVALVKL 225
Query: 261 SDRYGTSIGDSLRVLVSETRSERLMEAEKKAAS---LGPKLTVPMIIFFLPVLILVIIG 316
+ G D + R ++ K +G L P+++ L V L +G
Sbjct: 226 TLEQGGDAKDGFTAQADKIRELQMDMIAIKIGKRQTMGIILQGPLLLCNLMVFGLPTVG 284
>gi|238762412|ref|ZP_04623383.1| Type II secretion system protein F domain protein [Yersinia
kristensenii ATCC 33638]
gi|238699397|gb|EEP92143.1| Type II secretion system protein F domain protein [Yersinia
kristensenii ATCC 33638]
Length = 284
Score = 74.9 bits (183), Expect = 2e-11, Method: Composition-based stats.
Identities = 43/218 (19%), Positives = 90/218 (41%), Gaps = 9/218 (4%)
Query: 112 SLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNL 171
L+ +L R + I+ ++ I I+ + L + I+I + F +
Sbjct: 47 YLSTILKERNTLHILIPVIYSIGIYAVNYFWLNFNTLIILFFIMISVIYFQ-----LRLS 101
Query: 172 VQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSF 231
++ + K+ +P+AL ++ + SG SI+Q L R ++I G PL E L L+
Sbjct: 102 RKRHHTLFKKDFPEALLMINMAASSGASINQVLERCGQEISG---PLGNEFSLICRRLNV 158
Query: 232 LPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKA 291
+ + F + Y R + + + + G + + L + E +K
Sbjct: 159 GESPEAVFYDSYQRFKHPEFYFLITITLLNLQQGGQLRELTSRLSEVINKNKTTEQKKAV 218
Query: 292 ASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMKDH 329
+ +++V II +P+ ++ + I++M DH
Sbjct: 219 MTAQVRMSV-NIISIMPIAFSFLLYFLDPTTIESMWDH 255
>gi|84385680|ref|ZP_00988711.1| hypothetical Flp pilus assembly protein TadB [Vibrio splendidus
12B01]
gi|84379660|gb|EAP96512.1| hypothetical Flp pilus assembly protein TadB [Vibrio splendidus
12B01]
Length = 300
Score = 74.9 bits (183), Expect = 2e-11, Method: Composition-based stats.
Identities = 39/204 (19%), Positives = 82/204 (40%), Gaps = 14/204 (6%)
Query: 115 ILLVVRLVVPIIFLILGII---WIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNL 171
++L R + I I G I W + L L +G+ ++ G+ L
Sbjct: 64 MVLGPRSSLYIALYITGSIIASWYIVVELLSITNTWLVLGSSMVFTLCGY-------RFL 116
Query: 172 VQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSF 231
V +R+ + +PDAL++L+ V +G S+ QA+ V + + P+ E L L
Sbjct: 117 VTRRRREFENTFPDALNILMSAVTAGDSLMQAISYVGDVMHN---PIGREFKLMGDRLKL 173
Query: 232 LPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKA 291
+ +V + T + + G + + L+ R +E +K A
Sbjct: 174 GESPEVVLQRSCKNYPYPEFLFFTVTIRANIARGGQLKGVMARLIRVLVDSRTLEKKKMA 233
Query: 292 ASLGPKLTVPMIIFFLPVLILVII 315
+ +++ ++ P++ ++I+
Sbjct: 234 MTSEARISAKIVAAI-PLIFMLIL 256
>gi|238750901|ref|ZP_04612398.1| Type II secretion system protein F domain protein [Yersinia rohdei
ATCC 43380]
gi|238710815|gb|EEQ03036.1| Type II secretion system protein F domain protein [Yersinia rohdei
ATCC 43380]
Length = 272
Score = 74.9 bits (183), Expect = 2e-11, Method: Composition-based stats.
Identities = 42/205 (20%), Positives = 84/205 (40%), Gaps = 9/205 (4%)
Query: 125 IIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWP 184
I + I I IF + + + + I+ + F I +K S K+ +P
Sbjct: 48 ITYPIAYSICIFSVNLFYFHLNTVLIFIFIVTSIIYFQ-----IKAARKKHYSLFKQDFP 102
Query: 185 DALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYN 244
+ L ++ + SG SI+Q L R ++I G PL E+ L L+ + + F + Y
Sbjct: 103 EVLLMINMASSSGASINQVLERCGQEITG---PLGSELRLICRRLNLGESPESVFHDAYQ 159
Query: 245 RTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMII 304
R ++ + + G + D L + E +K + +++V II
Sbjct: 160 RFNFPEFYFLITIILLNLQQGGQLKDLTNRLSQIISKNKTAEQKKATMTAETRMSV-NII 218
Query: 305 FFLPVLILVIIGPAILSIIDTMKDH 329
+P+ +++ + I++M +H
Sbjct: 219 SVMPIAFSLLLYFIDSTSIESMWNH 243
>gi|197123314|ref|YP_002135265.1| type II secretion system protein [Anaeromyxobacter sp. K]
gi|196173163|gb|ACG74136.1| type II secretion system protein [Anaeromyxobacter sp. K]
Length = 320
Score = 74.9 bits (183), Expect = 2e-11, Method: Composition-based stats.
Identities = 39/268 (14%), Positives = 96/268 (35%), Gaps = 19/268 (7%)
Query: 49 AVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFR 108
A R ++++ ++ + SA R + + + L+ + + L A
Sbjct: 28 ADRRSAELRRRLHAIGRGSALDADLLRRGRLAKAPALQQVLEQVPGARRLERLLEQA--D 85
Query: 109 SEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWI 168
S +++ L + L ++ ++G+ + + + G P V +
Sbjct: 86 SSWTVARLGALTLAGGLVAALIGV------------SLRSGAVGIGGLAAGGAALPIVGV 133
Query: 169 SNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAE 228
+ KR + + P+ALD++ + +G ++ A + VA ++ P+S E E
Sbjct: 134 LSARAKRSAKLSEQLPEALDMMARSLRAGHAVTAAFQVVASEM---PEPVSVEFARAYEE 190
Query: 229 LSFLPNRQVAFENFYNRT-QMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEA 287
+ A R ++ + + G ++ + L + R
Sbjct: 191 QRLGLTLERAVVQMSERCPGNGDMKIFAVSAVIQRETGGNLAEILDQIGETIRQRYRFYG 250
Query: 288 EKKAASLGPKLTVPMIIFFLPVLILVII 315
+ +A + + + I+ LP + V +
Sbjct: 251 KLRALTGEGRASAV-ILGALPFAVAVAL 277
>gi|55377349|ref|YP_135199.1| hypothetical protein rrnAC0464 [Haloarcula marismortui ATCC 43049]
gi|55230074|gb|AAV45493.1| unknown [Haloarcula marismortui ATCC 43049]
Length = 815
Score = 74.9 bits (183), Expect = 2e-11, Method: Composition-based stats.
Identities = 36/163 (22%), Positives = 69/163 (42%), Gaps = 4/163 (2%)
Query: 153 VILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIG 212
+++ + P + + +R S I+ A PD L+ L E+G+++ ++LRRV G
Sbjct: 452 LVIQSVLLILGPFALVRFIYTQRLSRIEDATPDLLERLASLNEAGMTVVESLRRVR---G 508
Query: 213 GQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSL 272
L+EEM A++ N A F R Q V L + +G
Sbjct: 509 SDIGVLTEEMHRIWADIRMGANVDDALVRFGRRVQTTAVTRIVTLLTHAMHASGQLGPVF 568
Query: 273 RVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVII 315
R+ +++ L ++ + L V + F + ++I+V +
Sbjct: 569 RIAATQS-RADLRLKRRRRQQMLTYLVVIYVAFLVFLVIIVAV 610
Score = 66.8 bits (162), Expect = 5e-09, Method: Composition-based stats.
Identities = 32/198 (16%), Positives = 64/198 (32%), Gaps = 6/198 (3%)
Query: 123 VPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVW----ISNLVQKRQSS 178
+P + + F + +G +L G ++ + N R +
Sbjct: 108 LPSTMVTAFGLRTFELVLTPTQTLYILIGGGVLSGAATAGLTYLYRWERLKNQADVRSRN 167
Query: 179 IKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELS-FLPNRQV 237
I + + G+S +R +A + + E+ + + E+ F +
Sbjct: 168 IDEGMARTIAFMYALSRGGMSFSDVMRVLARN-QEIYGDTAREVGVAVREMDLFGRDMIT 226
Query: 238 AFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPK 297
A E+ RT + + + L + G S+ LR + E E L
Sbjct: 227 ALEHVSRRTPSEQFKTFIENLSSVLQSGQSLAPFLREQYERHQEEAAERQEDLLERLATV 286
Query: 298 LTVPMIIFFLPVLILVII 315
+ +F VL L+ I
Sbjct: 287 AEAYVTVFVAAVLFLMTI 304
>gi|163801673|ref|ZP_02195571.1| hypothetical Flp pilus assembly protein TadB [Vibrio sp. AND4]
gi|159174590|gb|EDP59392.1| hypothetical Flp pilus assembly protein TadB [Vibrio sp. AND4]
Length = 300
Score = 74.5 bits (182), Expect = 2e-11, Method: Composition-based stats.
Identities = 40/202 (19%), Positives = 82/202 (40%), Gaps = 14/202 (6%)
Query: 117 LVVRLVVPIIFLILGII---WIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQ 173
L R + I I G W + LL + V +L+ +G+ LV+
Sbjct: 66 LGPRSSLYIALYITGSFIASWYIVFKLLLFSNIFIVVALSVLLTVLGY-------RYLVK 118
Query: 174 KRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLP 233
KR+++ + +PDAL++L+ + +G S+ QA+ V + + + P+ E L L
Sbjct: 119 KRRTNFENTFPDALNILMSAITAGDSLMQAISYVGDVM---NDPIGVEFKLMGDRLKLGE 175
Query: 234 NRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAAS 293
+V + L + G + L L+ R ++ +K A +
Sbjct: 176 TPEVVLQRSCKNYPYPEFLFFAVTLRANIARGGQLKGVLARLIRVLVDARTLDKKKMAMT 235
Query: 294 LGPKLTVPMIIFFLPVLILVII 315
+++ ++ PV+ ++I+
Sbjct: 236 SEARISAKIVAAI-PVIFMIIL 256
>gi|20094142|ref|NP_613989.1| hypothetical protein MK0705 [Methanopyrus kandleri AV19]
gi|19887149|gb|AAM01919.1| Predicted membrane protein [Methanopyrus kandleri AV19]
Length = 325
Score = 74.5 bits (182), Expect = 2e-11, Method: Composition-based stats.
Identities = 34/166 (20%), Positives = 71/166 (42%), Gaps = 4/166 (2%)
Query: 126 IFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPD 185
I+L +I++ + P ++G+ + V + + R I+ PD
Sbjct: 54 IYLSASLIYVL-IGMSISGPLIPKLGSTAFLLAVMPLYLLIHPRIVQSLRIKDIEENLPD 112
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
AL ++ + +G+SI + +R VAE LS E + + ++ + A + R
Sbjct: 113 ALRQMVEELRAGLSIFETIRNVAE---SDYGELSREFRIVVRDMDTGKTFEEAILDMAER 169
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKA 291
+ + A + ++ G ++ D L + ++ R R +E E+KA
Sbjct: 170 VNSELLTRAVRLTVRISMSGGALADVLEAVENDIREVRRIELERKA 215
>gi|254483273|ref|ZP_05096505.1| Bacterial type II secretion system protein F domain [marine gamma
proteobacterium HTCC2148]
gi|214036496|gb|EEB77171.1| Bacterial type II secretion system protein F domain [marine gamma
proteobacterium HTCC2148]
Length = 283
Score = 74.5 bits (182), Expect = 2e-11, Method: Composition-based stats.
Identities = 46/239 (19%), Positives = 93/239 (38%), Gaps = 20/239 (8%)
Query: 79 SLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGY 138
L++FV + E I +KL+ F + L+++ + +G+
Sbjct: 21 GLQSFVPVAVTRWRSDQEEIDDKLQNI-FYTSSEARTFLILKYGGTLAAFFIGL------ 73
Query: 139 DKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGI 198
F + I +G V + P V + N++++R+ ++ D + L ++SG+
Sbjct: 74 ------WFMNSLVFGIFLGIVIYLLPEVLLDNILRRRRERLEAQTADVMTALSASIKSGM 127
Query: 199 SIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQAL 258
+I+QA + +++ P+SEE L + A ++ R Q+ + Q +
Sbjct: 128 TIEQAFSEMVDNM---YPPISEEFALIRERIDAGQPVIAAVKSADERLQVPRLSLIFQTI 184
Query: 259 IQSDRYGTSIGDSLRVLVSETRS----ERLMEAEKKAASLGPKLTVPMIIFFLPVLILV 313
S G + + L TR E + E L ++ M F +L L+
Sbjct: 185 CISLERGGRLASLMDRLAESTREIERVEERVRTETAGLRLSARIMFLMPFFICGLLYLI 243
>gi|254393102|ref|ZP_05008262.1| integral membrane protein [Streptomyces clavuligerus ATCC 27064]
gi|294814749|ref|ZP_06773392.1| integral membrane protein [Streptomyces clavuligerus ATCC 27064]
gi|326443128|ref|ZP_08217862.1| hypothetical protein SclaA2_18783 [Streptomyces clavuligerus ATCC
27064]
gi|197706749|gb|EDY52561.1| integral membrane protein [Streptomyces clavuligerus ATCC 27064]
gi|294327348|gb|EFG08991.1| integral membrane protein [Streptomyces clavuligerus ATCC 27064]
Length = 313
Score = 74.5 bits (182), Expect = 2e-11, Method: Composition-based stats.
Identities = 31/163 (19%), Positives = 57/163 (34%), Gaps = 3/163 (1%)
Query: 154 ILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGG 213
+L V ++ KR + P+ +L ++G+S+ AL AE++
Sbjct: 113 VLAALVALWGARNFLEWQRVKRTEAFIAQLPELTRVLANATQAGLSLRTALAMAAEELDD 172
Query: 214 QSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLR 273
P E+ + +L+ + A R + LI ++R G + SLR
Sbjct: 173 ---PAGHELGIVADQLAVGQSLDDALGTLAERLPSRELIVLVTTLILANRAGGQVVTSLR 229
Query: 274 VLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIG 316
L + E K+T + +L+I G
Sbjct: 230 NLTQSLEERKETRREVTTTLSQIKVTALAVPLLGLGFLLMING 272
>gi|240102253|ref|YP_002958561.1| type II secretion system protein F [Thermococcus gammatolerans EJ3]
gi|239909806|gb|ACS32697.1| Bacterial type II secretion system protein F [Thermococcus
gammatolerans EJ3]
Length = 303
Score = 74.5 bits (182), Expect = 2e-11, Method: Composition-based stats.
Identities = 35/183 (19%), Positives = 71/183 (38%), Gaps = 8/183 (4%)
Query: 135 IFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICV 194
+L F V V + + F P V KR +++ PDA L +
Sbjct: 55 FAAVVLILSNTFYALVTLVAVFVGMAFAYPYW----RVSKRIEEMEKHLPDAFFYLASSL 110
Query: 195 ESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQ-MDCVRN 253
+GIS +AL + + L++E + E+ + A + R + V
Sbjct: 111 RAGISFSEALEDLTT---AKFGALTDEFKRVVGEIRKGRSTVEALKVMAVRNRKSPVVYR 167
Query: 254 ATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILV 313
+ +I++ G + D L + ++ R ++ E+KA++ + + F+ I+
Sbjct: 168 SLMIIIEALERGAPMSDVLVYVANDVREILRIKQERKASTGMQMMFFIITSGFVGPAIIG 227
Query: 314 IIG 316
+G
Sbjct: 228 TVG 230
>gi|260463898|ref|ZP_05812094.1| type II secretion system protein [Mesorhizobium opportunistum
WSM2075]
gi|259030273|gb|EEW31553.1| type II secretion system protein [Mesorhizobium opportunistum
WSM2075]
Length = 321
Score = 74.5 bits (182), Expect = 2e-11, Method: Composition-based stats.
Identities = 25/158 (15%), Positives = 66/158 (41%), Gaps = 8/158 (5%)
Query: 169 SNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAE 228
+ ++R P+AL+L+ +++G + A+ V+ ++ P+ E + E
Sbjct: 136 RFMRKRRLKRFGMQLPEALELITRGLKAGHPVPVAIAMVSREMPD---PIGTEFGVIADE 192
Query: 229 LSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAE 288
+++ + A + ++R + + A+ G ++ + L L R + +
Sbjct: 193 VTYGSDLVSALNSLFDRVGHEDLPLFMTAVSIQSSSGGNLREILDGLALTIRERGKLRRK 252
Query: 289 KKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
+A S +L+ I+ +P L + I++++
Sbjct: 253 VRAISTEGRLSA-YILTAIPAL----LFAGIMAMMPGF 285
>gi|149188842|ref|ZP_01867132.1| hypothetical Flp pilus assembly protein TadB [Vibrio shilonii AK1]
gi|148837262|gb|EDL54209.1| hypothetical Flp pilus assembly protein TadB [Vibrio shilonii AK1]
Length = 301
Score = 74.5 bits (182), Expect = 2e-11, Method: Composition-based stats.
Identities = 38/195 (19%), Positives = 80/195 (41%), Gaps = 11/195 (5%)
Query: 121 LVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIK 180
+V + + W ++ L + V A+++ ++G+ W+SN R+ +
Sbjct: 74 MVGLFVVASVVAAWYIAFEVLSANQIVVFVVALLVFWFLGY----QWLSNR---RRVQFQ 126
Query: 181 RAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFE 240
+ +PDAL++L+ V +G S+ QA+ V +++ + E L + +
Sbjct: 127 QTFPDALNVLMSAVTAGESLMQAVSFVGQNLDN---EVGREFKNMGDRLKLGESPDQVLQ 183
Query: 241 NFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV 300
R T A+ + G + L L+ R ME +K A + +++
Sbjct: 184 RAAKRFPYPEFIFFTIAIRANMSRGGQLRGVLARLIRVLVDARTMETKKMAMTSEARISA 243
Query: 301 PMIIFFLPVLILVII 315
++ PV+ VI+
Sbjct: 244 KVVAAI-PVIFAVIL 257
>gi|298674469|ref|YP_003726219.1| type II secretion system F domain-containing protein
[Methanohalobium evestigatum Z-7303]
gi|298287457|gb|ADI73423.1| Type II secretion system F domain protein [Methanohalobium
evestigatum Z-7303]
Length = 750
Score = 74.1 bits (181), Expect = 2e-11, Method: Composition-based stats.
Identities = 37/178 (20%), Positives = 72/178 (40%), Gaps = 6/178 (3%)
Query: 114 NILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVG--AVILIGYVGFCAPSVWISNL 171
N LL V + P+ ++L I D + +++ Y+ P
Sbjct: 469 NPLLSVAVTSPVAVILLLIFVATNMDTFTTMSETIDFLDDRLVIATYI-IIVPLAIFHET 527
Query: 172 VQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSF 231
KRQ + +PD L L VE+G+++ +++ + + + LS+E ++S+
Sbjct: 528 KSKRQKKLDGNFPDFLKKLASTVETGMTLQDSIKLMVK---TDNEGLSDETRKIWKDISW 584
Query: 232 LPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEK 289
A F NR + V + + +++ IG+ L V + SE M+ E+
Sbjct: 585 GMELNDALVRFANRLKTQVVSRSMTLITKANESSGDIGEVLMVAARDASSEEEMKRER 642
Score = 58.7 bits (141), Expect = 1e-06, Method: Composition-based stats.
Identities = 44/303 (14%), Positives = 101/303 (33%), Gaps = 29/303 (9%)
Query: 50 VEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRS 109
ER + K D + T K + + + + +L+ A +
Sbjct: 63 NERGLSDKISSRINNLDRQARLFLTIFKKIPFALLGEKMKEKKKKYARLQLQLKQARIPT 122
Query: 110 --EYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYP---------------------- 145
E ++ + +V + ILGI + ++ P
Sbjct: 123 SYEMYISNAIFYSVVSGLTGAILGIFAAYMLIAVIGLPDNLTNLTFGPSTAWLLNFKEIF 182
Query: 146 --FQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQA 203
+ V I +G + + V+ +R+ +I P A+ + + G++I
Sbjct: 183 LSLFIVVFTTITLGGMTYALFLVYPGFQASERKRNIDSHLPYAVTFMYALSKGGMNIINV 242
Query: 204 LRRVAEDIGGQSVPLSEEMLLTIAELS-FLPNRQVAFENFYNRTQMDCVRNATQALIQSD 262
++ S+E+ I E+ F + + A N T D ++ L+
Sbjct: 243 FDSLSRS-SNTYGEASKEVETIIREMDYFGHDLRTAISNVSEMTPSDRFQDLLHNLLTVI 301
Query: 263 RYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
G SI + + + + + + +LG + F L ++I+G ++++
Sbjct: 302 DSGGSISKYFQDKSDQYLKKAIDDQKGFLETLGLLAESYVTAFVAGPLFIIIMG-IMMTV 360
Query: 323 IDT 325
+ +
Sbjct: 361 MGS 363
>gi|302553854|ref|ZP_07306196.1| integral membrane protein [Streptomyces viridochromogenes DSM
40736]
gi|302471472|gb|EFL34565.1| integral membrane protein [Streptomyces viridochromogenes DSM
40736]
Length = 314
Score = 74.1 bits (181), Expect = 2e-11, Method: Composition-based stats.
Identities = 28/175 (16%), Positives = 65/175 (37%), Gaps = 8/175 (4%)
Query: 125 IIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWP 184
++++ + ++ + PF + ++ IG +++ QKR P
Sbjct: 90 FVYMLATVAGLWLIGQAALAPFFGPLAGLLGIGIA-----VQFLNWQRQKRIEKFINQLP 144
Query: 185 DALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYN 244
+ +L ++G+++ A+ AE++ P EE+ +L+ + A +
Sbjct: 145 EMARILANATQAGLALRTAIGMAAEEMEA---PAGEELGKVSDQLAVGASMDDALGELAD 201
Query: 245 RTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLT 299
R + L+ S+R G + +LR L + E + +T
Sbjct: 202 RLPSRELVVLVTTLVLSNRAGGQVVSALRNLTETLEERKETRREVRTQLSQVTMT 256
>gi|218708111|ref|YP_002415732.1| putative bacterial type II secretion system protein F [Vibrio
splendidus LGP32]
gi|218321130|emb|CAV17080.1| putative bacterial type II secretion system,protein F, TadB [Vibrio
splendidus LGP32]
Length = 306
Score = 74.1 bits (181), Expect = 2e-11, Method: Composition-based stats.
Identities = 38/213 (17%), Positives = 85/213 (39%), Gaps = 11/213 (5%)
Query: 91 AILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRV 150
A L D N KLR + L + + ++V+ + +L I + L + F++
Sbjct: 51 ASLSDRNFKQKLRVRWDNLQRQLGKMALGKVVIFSVVALLAIGILNQMSLRLPW-FEILP 109
Query: 151 GAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAED 210
+I+ + G+ +L ++ + + +PDAL++L + +G SI + + V +
Sbjct: 110 LTLIIAWFFGYL-------HLQKREKKRFEETFPDALNMLASSLSAGESIGRGIGYVGKK 162
Query: 211 IGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGD 270
+ G + +E L L+ F R L + + G + +
Sbjct: 163 LEG---EVGKEFKLMSERLNLGEPIDDVFRKSCRRFPYPSFHFFVITLRANMQRGGQLKE 219
Query: 271 SLRVLVSETRSERLMEAEKKAASLGPKLTVPMI 303
+ L + R +E +K A + +++ ++
Sbjct: 220 VMSRLNRQMFEARAVERKKFALTSEARISAKIV 252
>gi|182436319|ref|YP_001824038.1| putative integral membrane protein [Streptomyces griseus subsp.
griseus NBRC 13350]
gi|326776949|ref|ZP_08236214.1| Type II secretion system F domain protein [Streptomyces cf. griseus
XylebKG-1]
gi|178464835|dbj|BAG19355.1| putative integral membrane protein [Streptomyces griseus subsp.
griseus NBRC 13350]
gi|326657282|gb|EGE42128.1| Type II secretion system F domain protein [Streptomyces cf. griseus
XylebKG-1]
Length = 314
Score = 74.1 bits (181), Expect = 2e-11, Method: Composition-based stats.
Identities = 30/169 (17%), Positives = 61/169 (36%), Gaps = 5/169 (2%)
Query: 122 VVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKR 181
V P F + ++ + G + L + +G + +++ KR
Sbjct: 84 VTPGEFFVYALVAMAGL--WMVASSLLAAFFGPVAALIGLWGTNAFLNWQRIKRTERFIN 141
Query: 182 AWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFEN 241
P+ +L ++G+++ +L AE++ P EE+ L+ + A
Sbjct: 142 QLPELSRILANATQAGLALRTSLSMAAEELED---PAGEELARVARRLAVGEPLEDALSE 198
Query: 242 FYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKK 290
+R + L+ S+R G ++ SLR L + E K
Sbjct: 199 LTDRLPSRELVVLVTTLVLSNRAGGTVVSSLRNLTETLEERKETRREVK 247
>gi|294631143|ref|ZP_06709703.1| integral membrane protein [Streptomyces sp. e14]
gi|292834476|gb|EFF92825.1| integral membrane protein [Streptomyces sp. e14]
Length = 313
Score = 74.1 bits (181), Expect = 2e-11, Method: Composition-based stats.
Identities = 30/174 (17%), Positives = 64/174 (36%), Gaps = 10/174 (5%)
Query: 126 IFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPD 185
+ ++ +W+ G L + + G +G A ++S QKR P+
Sbjct: 92 MLAVVAALWLIGQAALAPFFGP-------IAGLLGIWAALQFLSWQRQKRIEKFINQLPE 144
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
+L ++G+++ A+ AE++ P EE+ +L+ + A +R
Sbjct: 145 LARILANATQAGLALRTAVGMAAEELEA---PAGEELGKVSHQLALGASMDDALGELADR 201
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLT 299
+ L+ ++R G + +LR L + E + +T
Sbjct: 202 LPSRELVVLVTTLVLANRAGGQVVSALRNLTETLEERKETRREVRTQLSQVNMT 255
>gi|297543560|ref|YP_003675862.1| Type II secretion system F domain-containing protein
[Thermoanaerobacter mathranii subsp. mathranii str. A3]
gi|296841335|gb|ADH59851.1| Type II secretion system F domain protein [Thermoanaerobacter
mathranii subsp. mathranii str. A3]
Length = 274
Score = 74.1 bits (181), Expect = 3e-11, Method: Composition-based stats.
Identities = 44/255 (17%), Positives = 102/255 (40%), Gaps = 18/255 (7%)
Query: 73 RTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGI 132
R + + + V K K IL + I +KL+AAG + ++ R + +
Sbjct: 35 RIKPADEISKIVGKTVRKDIL--QKINDKLKAAGNPLGLTAETYILARA--GLFLFSIAY 90
Query: 133 IWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLI 192
++ G + +L+ +GF ++IS++ + RQ +R P+ +DL +
Sbjct: 91 AYLTGMSGIQ----------AVLLVMLGFFGLDIYISSVKKDRQEKFRREMPEIVDLFEL 140
Query: 193 CVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVR 252
+ + ++ A+ Q+ + + AE ++ + F N +
Sbjct: 141 GAAADVPLEDIFLITAQ--SAQAKEVRNALTKLAAEYIMTREKEGCLKRFCNEVNLPEAN 198
Query: 253 NATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLIL 312
AL+Q +R G ++ + L VL S + + ++ ++ K+ F + ++
Sbjct: 199 ILAMALLQGERTGRTL-EILSVLSSSLFNTAAAKIARQDKAMEYKVLAAT-FFLMASIVT 256
Query: 313 VIIGPAILSIIDTMK 327
+ + P +I ++
Sbjct: 257 LYMYPYFTNIQGGLR 271
>gi|260587080|ref|ZP_05852993.1| putative bacterial type II secretion system protein F domain
protein [Blautia hansenii DSM 20583]
gi|260542570|gb|EEX23139.1| putative bacterial type II secretion system protein F domain
protein [Blautia hansenii DSM 20583]
Length = 248
Score = 74.1 bits (181), Expect = 3e-11, Method: Composition-based stats.
Identities = 33/178 (18%), Positives = 74/178 (41%), Gaps = 9/178 (5%)
Query: 155 LIGYVGFCAPSVWISNLVQK----RQSSIKRAWPDALDLLLICVESGISIDQALRRVAED 210
+ + P +I ++ R+ + + DAL+ + + + +G S+D +R +D
Sbjct: 39 AVFFFMLPLPFWYIHQRKKQQIRLRKKRLNYQFKDALNAMQVGISAGYSLDNTIREARKD 98
Query: 211 IG---GQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTS 267
+ G+ ++ E +L + + R++++ + N T LIQ+ + G +
Sbjct: 99 LERLYGEKAEMAREFAYIERQLGHSIPLEELLYDLGIRSRVEDILNFTDVLIQAKKMGGN 158
Query: 268 IGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILV--IIGPAILSII 323
+ L +S ++ E A K+ ++ F +IL I P LS++
Sbjct: 159 MRGILNRCISSIEERIQVKKEIDAVLASRKMEQKIMSFIPLGIILYMQITSPEFLSVL 216
>gi|331082851|ref|ZP_08331973.1| hypothetical protein HMPREF0992_00897 [Lachnospiraceae bacterium
6_1_63FAA]
gi|330400180|gb|EGG79829.1| hypothetical protein HMPREF0992_00897 [Lachnospiraceae bacterium
6_1_63FAA]
Length = 248
Score = 74.1 bits (181), Expect = 3e-11, Method: Composition-based stats.
Identities = 33/178 (18%), Positives = 74/178 (41%), Gaps = 9/178 (5%)
Query: 155 LIGYVGFCAPSVWISNLVQK----RQSSIKRAWPDALDLLLICVESGISIDQALRRVAED 210
+ + P +I ++ R+ + + DAL+ + + + +G S+D +R +D
Sbjct: 39 AVFFFMLPLPFWYIHQRKKQQIRLRKKRLNYQFKDALNAMQVGISAGYSLDNTIREARKD 98
Query: 211 IG---GQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTS 267
+ G+ ++ E +L + + R++++ + N T LIQ+ + G +
Sbjct: 99 LERLYGEKAEMAREFAYIERQLGHSIPLEELLYDLGIRSRVEDILNFTDVLIQAKKMGGN 158
Query: 268 IGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILV--IIGPAILSII 323
+ L +S ++ E A K+ ++ F +IL I P LS++
Sbjct: 159 MRGILNRCISSIEERIQVKKEIDAVLASRKMEQKIMSFIPLGIILYMQITSPEFLSVL 216
>gi|86147188|ref|ZP_01065504.1| TadB-like protein involved in pilus formation and/or protein
secretion [Vibrio sp. MED222]
gi|85835072|gb|EAQ53214.1| TadB-like protein involved in pilus formation and/or protein
secretion [Vibrio sp. MED222]
Length = 306
Score = 74.1 bits (181), Expect = 3e-11, Method: Composition-based stats.
Identities = 38/213 (17%), Positives = 85/213 (39%), Gaps = 11/213 (5%)
Query: 91 AILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRV 150
A L D N KLR + L + + ++V+ + +L I + L + F++
Sbjct: 51 ASLSDRNFKQKLRVRWDNLQRQLGKMALGKVVIFSVVALLAIGILNQMSLRLPW-FEILP 109
Query: 151 GAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAED 210
+I+ + G+ +L ++ + + +PDAL++L + +G SI + + V +
Sbjct: 110 LTLIIAWFFGYL-------HLQKREKKRFEETFPDALNMLASSLSAGESIGRGIGYVGKK 162
Query: 211 IGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGD 270
+ G + +E L L+ F R L + + G + +
Sbjct: 163 LEG---EVGKEFKLMSERLNLGEPIDDVFRKSCRRFPYPSFHFFVITLRANMQRGGQLKE 219
Query: 271 SLRVLVSETRSERLMEAEKKAASLGPKLTVPMI 303
+ L + R +E +K A + +++ ++
Sbjct: 220 VMSRLNRQMFEARAVERKKFALTSEARISAKIV 252
>gi|326390769|ref|ZP_08212322.1| Type II secretion system F domain [Thermoanaerobacter ethanolicus
JW 200]
gi|325993163|gb|EGD51602.1| Type II secretion system F domain [Thermoanaerobacter ethanolicus
JW 200]
Length = 255
Score = 74.1 bits (181), Expect = 3e-11, Method: Composition-based stats.
Identities = 44/255 (17%), Positives = 102/255 (40%), Gaps = 18/255 (7%)
Query: 73 RTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGI 132
R + + + V K K +L + I +KL+AAG + ++ R + +
Sbjct: 16 RIKPADEISKIVGKTVKKDVL--QKINDKLKAAGNPLGLTAETYILARA--GLFLFSIAY 71
Query: 133 IWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLI 192
++ G + L+ +GF ++IS++ + RQ +R P+ +DL +
Sbjct: 72 AYLTGMSGIQ----------AALLIILGFFGLDIYISSVKKDRQEKFRREMPEIVDLFEL 121
Query: 193 CVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVR 252
+ + ++ A+ Q+ + + AE ++VA + F N +
Sbjct: 122 GAAADVPLEDIFLITAQ--SAQAKEVRNALTKLAAEYIMTKEKEVALKRFINEVNLPEAN 179
Query: 253 NATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLIL 312
AL+Q +R G ++ + L L + + + ++ S+ K+ + F + ++
Sbjct: 180 VLAMALLQGERTGRTL-EILSTLSTSLFNTAASKIARQDKSMEYKVLAA-VFFLMASIVT 237
Query: 313 VIIGPAILSIIDTMK 327
+ I +I ++
Sbjct: 238 LYIYSYFTNIQGGLR 252
>gi|311743552|ref|ZP_07717358.1| type II secretion system protein [Aeromicrobium marinum DSM 15272]
gi|311312682|gb|EFQ82593.1| type II secretion system protein [Aeromicrobium marinum DSM 15272]
Length = 314
Score = 74.1 bits (181), Expect = 3e-11, Method: Composition-based stats.
Identities = 37/222 (16%), Positives = 81/222 (36%), Gaps = 8/222 (3%)
Query: 102 LRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGF 161
LR++G++ + + L + + VP L+ + L + V + +
Sbjct: 63 LRSSGWK-PFRTSELELADIKVPAAQLVAWVFLGSAAGFLAGLVLRQNVWLGLAAAVIAP 121
Query: 162 CAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEE 221
+W+ KR+ L +L + +G S QA+ A D P+ +E
Sbjct: 122 VGAKMWVKMRTAKRRREFNAQLDGMLQMLASSMRAGQSFQQAMGSCARD---ADSPMQDE 178
Query: 222 MLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRS 281
+ + E + + + R + + +A+ + G ++ + + + R
Sbjct: 179 LTRILNENRLGRDIIASMNDTAERMECEDFVWLAEAVELTRESGGNLNEIIDRVAQMIRD 238
Query: 282 ERLMEAEKKAASLGPKLTVPMIIFFLPVLILVI---IGPAIL 320
+ + A + + + I+ LP+LI V I P L
Sbjct: 239 RSEIREKVHAYASEGRFSS-YILMSLPLLIAVAYSFITPGYL 279
>gi|262275465|ref|ZP_06053275.1| flp pilus assembly protein TadB [Grimontia hollisae CIP 101886]
gi|262220710|gb|EEY72025.1| flp pilus assembly protein TadB [Grimontia hollisae CIP 101886]
Length = 308
Score = 74.1 bits (181), Expect = 3e-11, Method: Composition-based stats.
Identities = 39/250 (15%), Positives = 91/250 (36%), Gaps = 13/250 (5%)
Query: 65 KDSASSRLRTRDSKSLRNFVK-KLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVV 123
K S LR + F++ ++ L + + K R + V++++
Sbjct: 25 KSRRESMLRDNNPLPETRFLEHQVVDMEALTETTLWQKTRRFANNLLNDIGDFAVLKII- 83
Query: 124 PIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAW 183
+ L ++ P V A+ + ++G + + Q++ +R +
Sbjct: 84 AFLGLACSVMAYMLISLFKFGPIISVVIALPSVTFLGIRYMDI-------RTQNAFERNF 136
Query: 184 PDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFY 243
PDAL+++ V +G S+ A++ V + + E L+ + F
Sbjct: 137 PDALNMVASSVTAGESLLHAIQYVGSHLDNI---VGREFKRMGERLNIGESTDAVFRKAC 193
Query: 244 NRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMI 303
R + A+ + G + + L + R +E +K+A + +++ I
Sbjct: 194 QRFPTPAFQFFVIAMRVNVNRGGQLRHVIGRLNRVLFNARSIEMKKRAMTAEARMSS-YI 252
Query: 304 IFFLPVLILV 313
+ +P + L
Sbjct: 253 VCAIPFIFLF 262
>gi|302558696|ref|ZP_07311038.1| integral membrane protein [Streptomyces griseoflavus Tu4000]
gi|302476314|gb|EFL39407.1| integral membrane protein [Streptomyces griseoflavus Tu4000]
Length = 314
Score = 73.8 bits (180), Expect = 3e-11, Method: Composition-based stats.
Identities = 28/175 (16%), Positives = 62/175 (35%), Gaps = 8/175 (4%)
Query: 125 IIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWP 184
+ + ++ + PF + ++ IG +++ QKR P
Sbjct: 90 FACMTATVAGLWLVGQATLAPFFGPIAGLLGIGAA-----LQFLNWQRQKRIERFINQLP 144
Query: 185 DALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYN 244
+ +L ++G+++ A+ AE++ P EE+ +L+ + A +
Sbjct: 145 ELARILANATQAGLALRTAVGMAAEEMEA---PAGEELAKVANQLAVGASMDDALGELAD 201
Query: 245 RTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLT 299
R + L+ S+R G + +LR L + E + +T
Sbjct: 202 RLPSRELVVLVTTLVLSNRAGGQVVSALRNLTETLEERKETRREVRTQLSQVSMT 256
>gi|283777929|ref|YP_003368684.1| type II secretion system protein [Pirellula staleyi DSM 6068]
gi|283436382|gb|ADB14824.1| type II secretion system protein [Pirellula staleyi DSM 6068]
Length = 318
Score = 73.8 bits (180), Expect = 3e-11, Method: Composition-based stats.
Identities = 32/153 (20%), Positives = 66/153 (43%), Gaps = 4/153 (2%)
Query: 163 APSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEM 222
P + L ++R+ ++ R PDA D++ + +G ++ A + +A D + PL EE
Sbjct: 130 LPLWVVLKLRRRRRDTLARQLPDAFDVMSRALRAGQTVPAAFQVIATDF---NSPLKEEF 186
Query: 223 LLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSE 282
+ R VA + RT + ++ ALI + G ++ + L L R
Sbjct: 187 AHCYEQQHLGIERDVALRDLARRTSVMELQIFVVALIMHGKTGGNLAELLGNLALLLRKR 246
Query: 283 RLMEAEKKAASLGPKLTVPMIIFFLPVLILVII 315
+ +A + ++ ++ LP +I ++
Sbjct: 247 GKLHDRIRALTGEGRMQAV-VLIALPAVIFGVM 278
>gi|147919599|ref|YP_686661.1| putative type II secretion system protein [uncultured methanogenic
archaeon RC-I]
gi|110622057|emb|CAJ37335.1| putative bacterial type II secretion system protein [uncultured
methanogenic archaeon RC-I]
Length = 683
Score = 73.8 bits (180), Expect = 3e-11, Method: Composition-based stats.
Identities = 47/309 (15%), Positives = 107/309 (34%), Gaps = 38/309 (12%)
Query: 23 SIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRN 82
IF ++ +++ P ++ ++ + + +K + + R++ +
Sbjct: 297 VIFIVMISMMTPQDDETPRPFEVQVISQYDMLPENAADANTEKKRTAELQKARENLKFKQ 356
Query: 83 FVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGI-------IWI 135
F + N + + I + ++++ + + V+ +I L G +
Sbjct: 357 FTR--NPLEWVKKDPI----------NALAISVPVAIIFVLLLIGLTFGNMTQAFADVAT 404
Query: 136 FGYDKLLEYPFQLRVGAVILIGYVGFC------------APSVWISNLVQKRQSSIKRAW 183
F D + +I +G+ P R+ I
Sbjct: 405 FQKDLAMGKAEWTTDPLIIYGPIIGYFDDLIVYFLIISLTPLALFHESKNMRERKIASEM 464
Query: 184 PDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFY 243
PD L L E+G+++ Q++ +A G LS+E+ +L + + A + F
Sbjct: 465 PDFLKKLASTNETGMTLTQSINLIANSNFGT---LSKEVQKIHKDLQWGTDVSTALKRFA 521
Query: 244 NRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMI 303
N + + ++ I D L + ++ R+ LM E+ L +I
Sbjct: 522 NSLRTSSSTRVITLITKASESSGDIKDVLNIAANDARANELMRKERFDG----MLIYVVI 577
Query: 304 IFFLPVLIL 312
IF ++ L
Sbjct: 578 IFISFLVFL 586
>gi|50841725|ref|YP_054952.1| hypothetical protein PPA0232 [Propionibacterium acnes KPA171202]
gi|50839327|gb|AAT81994.1| hypothetical protein PPA0232 [Propionibacterium acnes KPA171202]
Length = 236
Score = 73.8 bits (180), Expect = 3e-11, Method: Composition-based stats.
Identities = 40/196 (20%), Positives = 86/196 (43%), Gaps = 6/196 (3%)
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
++ G++ + +PF G +L+G V + S+ ++ + P+AL
Sbjct: 43 VLAGLVAACAVLIGVPWPFPAAAGLSVLVGTVMWWGSGRLESSGHRRMEQHRAAQLPEAL 102
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQ 247
+L +E+G+ + A+ VAE + G P +E++ + L+ A+ + +
Sbjct: 103 LMLSSAMEAGLPLRSAVTTVAESLEG---PCAEDLRRLASSLAAGVPDSRAWNDLAS--- 156
Query: 248 MDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFL 307
++ R+ Q + ++ G I + L ++ + + EKKA G P++ L
Sbjct: 157 VEVWRDPAQDVSRAVDSGEGISELLSAHAAQLQVAAAEKTEKKARKAGVDAIGPLVCCHL 216
Query: 308 PVLILVIIGPAILSII 323
P +LV + P I ++
Sbjct: 217 PAFLLVGVVPIIAGMV 232
>gi|315650392|ref|ZP_07903463.1| conserved hypothetical protein [Eubacterium saburreum DSM 3986]
gi|315487319|gb|EFU77630.1| conserved hypothetical protein [Eubacterium saburreum DSM 3986]
Length = 409
Score = 73.8 bits (180), Expect = 3e-11, Method: Composition-based stats.
Identities = 35/223 (15%), Positives = 85/223 (38%), Gaps = 14/223 (6%)
Query: 83 FVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLL 142
++ K + DE+++ + + + S + +P F +++
Sbjct: 168 IPARVLPKPLSADESLIKRFKD--YISSADKKAVGEAGFYLPESFEGKKLVYHL----ED 221
Query: 143 EYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQ 202
F L I++ + + ++KR+ + + +PD + L++ + +G+S+ Q
Sbjct: 222 SMNFHLIWIMGIIVAILLYLREKNGDRQKLEKRKRELLKDYPDIVSKLIVFIGAGLSVRQ 281
Query: 203 ALRRVAEDIGGQSVP-------LSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNAT 255
+ + +D ++ EEM ++A L + +++F +
Sbjct: 282 SWEGIVKDYESENKEKRYAKRYAYEEMSKSLARLKTGTQENIVYKDFGRSCLLRQYMKLA 341
Query: 256 QALIQSDRYGTS-IGDSLRVLVSETRSERLMEAEKKAASLGPK 297
L Q+ + G S + L + ERL A+++ L K
Sbjct: 342 SLLEQNRKSGISGLSTLLNMEAQSAWEERLNLAKREGEELNTK 384
>gi|91772494|ref|YP_565186.1| type II secretion system protein [Methanococcoides burtonii DSM
6242]
gi|91711509|gb|ABE51436.1| type II secretion system protein F domain [Methanococcoides
burtonii DSM 6242]
Length = 716
Score = 73.8 bits (180), Expect = 3e-11, Method: Composition-based stats.
Identities = 40/217 (18%), Positives = 99/217 (45%), Gaps = 5/217 (2%)
Query: 114 NILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQL-RVGAVILIGYVGFCAPSVWISNLV 172
N L + + +PI L+L I + L+ ++ + I++ P ++
Sbjct: 436 NPLYSLAVTIPIAILVLVIPFWSNIGSLVTTAQKIGFIDDYIVLALFIAIVPMALFHEIM 495
Query: 173 QKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFL 232
+++ ++R +PD L L E+G+++ +++ +A+ +S L E+ + A++S+
Sbjct: 496 SRKKKHLERNFPDFLKKLASTNETGMTLRDSIKLMAK---SKSGHLGNEIRMIWADISWG 552
Query: 233 PNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAA 292
N + F NR + + + + +++ +G+ L V + SE+ M+ ++A
Sbjct: 553 MNVNDSLIRFANRLRTQVIARSLTLITKANESSGDVGEVLLVAARDAASEQSMK-RERAM 611
Query: 293 SLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMKDH 329
S+ + + I F + V ++ +I L+ + +
Sbjct: 612 SMMIYIVIIYISFLVFVGVIYVISTTFLAEMAAAGEK 648
Score = 56.8 bits (136), Expect = 4e-06, Method: Composition-based stats.
Identities = 52/314 (16%), Positives = 107/314 (34%), Gaps = 41/314 (13%)
Query: 49 AVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNL--------KAILVDENIVN 100
E+ L + + S + + + N +KKL + EN+
Sbjct: 21 NAEKSSLLTRLKSKFSVSSNGTSYSKEKASTYLNILKKLPFTLLGDYVQERKDKYENLQL 80
Query: 101 KLRAAGFR--SEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYP------------- 145
KL A E ++ + L+ + LI+GI + ++ P
Sbjct: 81 KLFQARIPLSYEMYVSNAIFYSLLSCVFGLIIGIFVAYISIYVVGLPEAITKLEFSESSA 140
Query: 146 -------------FQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLI 192
L A + G G ++ +R+ I R P A+ +
Sbjct: 141 WILQFKGIFVGFLIMLFFAASLGGGIYGMFM--LYPKFQASERKGDIDRQLPYAVTFMYA 198
Query: 193 CVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELS-FLPNRQVAFENFYNRTQMDCV 251
+ G++I + R ++ G +S+E+ I E+ F + + A N R+ D
Sbjct: 199 LSKGGMNIIEVFRLLSRS-GSTYGEVSKEINAIIREMDYFGYDMKTAISNISERSPSDRF 257
Query: 252 RNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLI 311
LI G SI + + + ++ + +LG + F L
Sbjct: 258 NELMDNLITIIDSGGSIPRYFQDKAEQYLQKTSIDEKGFLETLGLLAESYVTAFVAGPLF 317
Query: 312 LVIIGPAILSIIDT 325
++I+G +++++ +
Sbjct: 318 IIIMG-VMMAVMGS 330
>gi|220913394|ref|YP_002488703.1| type II secretion system protein [Arthrobacter chlorophenolicus A6]
gi|219860272|gb|ACL40614.1| type II secretion system protein [Arthrobacter chlorophenolicus A6]
Length = 310
Score = 73.8 bits (180), Expect = 3e-11, Method: Composition-based stats.
Identities = 47/228 (20%), Positives = 91/228 (39%), Gaps = 22/228 (9%)
Query: 101 KLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVG 160
+L AG R + L+V + + L+ + + + +L +VG
Sbjct: 72 QLENAGLRLSQA-EFFLLVGIGSGLGMLVGTV----------TINPLVGLLLALLAPFVG 120
Query: 161 FCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSE 220
+ + L KR+++ D L LL + +G SI +A+ A + P SE
Sbjct: 121 ----KLVVGFLAGKRRAAFDGQLGDTLQLLSGGLRAGHSILRAIDAAAAE---SQKPTSE 173
Query: 221 EMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETR 280
EM I E S + A + +R + + +QA+ + G ++ D L + R
Sbjct: 174 EMRRVITETSLGRDLLAALNDTADRMKNEDFVWISQAIQINREVGGNLADVLDQVNETIR 233
Query: 281 SERLMEAEKKAASLGPKLTVPMIIFFLP---VLILVIIGPAILSIIDT 325
++ KA + K + I+ +P V +L+ + P ++ + T
Sbjct: 234 ERAEIKGHIKALAAEGKFSA-YILIAMPFGIVAMLLAVSPTYMNSMFT 280
>gi|313822020|gb|EFS59734.1| type II secretion system F domain protein [Propionibacterium acnes
HL036PA1]
gi|314926542|gb|EFS90373.1| type II secretion system F domain protein [Propionibacterium acnes
HL036PA3]
Length = 249
Score = 73.8 bits (180), Expect = 4e-11, Method: Composition-based stats.
Identities = 40/196 (20%), Positives = 85/196 (43%), Gaps = 6/196 (3%)
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
++ G++ + +PF G +L+G V + S+ ++ + P+AL
Sbjct: 56 VLAGLVAACAVLIGVPWPFPAAAGLSVLVGTVMWWGSGRLESSGHRRMEQHRAAQLPEAL 115
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQ 247
+L +E+G+ + A+ VAE + G P +E++ + L+ A+ + +
Sbjct: 116 LMLSSAMEAGLPLRSAVTTVAESLEG---PCAEDLRRLASSLAAGVPDSRAWNDLAS--- 169
Query: 248 MDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFL 307
++ R+ Q + ++ G I + L ++ + + EKKA G P++ L
Sbjct: 170 VEVWRDPAQDVSRAVDSGEGISELLSAHAAQLQVAAAEKTEKKARKAGVDAIGPLVCCHL 229
Query: 308 PVLILVIIGPAILSII 323
P LV + P I ++
Sbjct: 230 PAFSLVGVVPIIAGMV 245
>gi|326330148|ref|ZP_08196459.1| putative integral membrane protein [Nocardioidaceae bacterium
Broad-1]
gi|325951961|gb|EGD43990.1| putative integral membrane protein [Nocardioidaceae bacterium
Broad-1]
Length = 298
Score = 73.8 bits (180), Expect = 4e-11, Method: Composition-based stats.
Identities = 37/214 (17%), Positives = 89/214 (41%), Gaps = 6/214 (2%)
Query: 112 SLNILLVVRLVVPIIFLILG-IIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISN 170
SL +L+ I+ L++ ++ +F + P+ + + I + V F P+ +
Sbjct: 87 SLARFYGDKLLYGIVGLLIPPMLTMFFRVLGFDLPYAIPLIGSIGLAVVMFFLPNYNAVD 146
Query: 171 LVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGG-QSVPLSEEMLLTIAEL 229
++ + RA +DL+ + +G + QA+ AE L+EE+ +
Sbjct: 147 DAKRARLEFTRALGAYIDLVALERNNGSGVRQAMEAAAEVGDSWVFTRLTEELARSRW-- 204
Query: 230 SFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEK 289
A + + + + S G S+ +LR R+ L +
Sbjct: 205 -SGVPPWEALRTLAEELGLPDLEDFADIMRLSGEEGASVYTNLRARSQAMRTAMLNDELT 263
Query: 290 KAASLGPKLTVPMIIFFLPVLILVIIGPAILSII 323
+A ++G ++++P + + V + +++ P++L ++
Sbjct: 264 EANAVGERMSIPASLLGV-VFMALLLAPSLLRMV 296
>gi|315231663|ref|YP_004072099.1| hypothetical protein TERMP_01901 [Thermococcus barophilus MP]
gi|315184691|gb|ADT84876.1| hypothetical protein TERMP_01901 [Thermococcus barophilus MP]
Length = 302
Score = 73.8 bits (180), Expect = 4e-11, Method: Composition-based stats.
Identities = 34/187 (18%), Positives = 79/187 (42%), Gaps = 6/187 (3%)
Query: 132 IIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWIS--NLVQKRQSSIKRAWPDALDL 189
++ F ++ + ++ ++ ++W+ + KR +++ PDA
Sbjct: 43 LLMSFLISIIIGTVLSMLNSIYGVVAFIVTLISTIWVYPYWRIVKRIEDMEQMLPDAFFY 102
Query: 190 LLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRT-QM 248
L + +GIS +AL + + L+EE T+AE+ A + F R +
Sbjct: 103 LASSLRAGISFSEALEELTT---AKFGALTEEFRKTVAEIKKGRPTVEALKAFALRNKKS 159
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP 308
+ + +I++ G + D L + ++ R ++ E+KA++ + + F+
Sbjct: 160 PVIYRSMMIIIEALERGAPMADVLVSVGNDVREILRIKKERKASTGMQTMFFIIASGFVG 219
Query: 309 VLILVII 315
LIL ++
Sbjct: 220 PLILGVV 226
>gi|295836765|ref|ZP_06823698.1| integral membrane protein [Streptomyces sp. SPB74]
gi|295826196|gb|EFG64731.1| integral membrane protein [Streptomyces sp. SPB74]
Length = 314
Score = 73.4 bits (179), Expect = 4e-11, Method: Composition-based stats.
Identities = 31/156 (19%), Positives = 56/156 (35%), Gaps = 7/156 (4%)
Query: 155 LIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQ 214
+ VG + +++ KR + PD LL +G+++ AL AE++
Sbjct: 115 IAALVGAWSAYAFLNWQRAKRIEAFISQLPDVARLLANATAAGLALRTALAMAAEELEN- 173
Query: 215 SVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRV 274
P EE+ +L+ + A + R + L S++ G ++ SLR
Sbjct: 174 --PAGEELSNVADQLALGRSVDEALDELQRRLPSRELVVLVTTLALSNKAGGTVVGSLRN 231
Query: 275 LVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVL 310
L + E + T F +P L
Sbjct: 232 LTVTLEERKETRREVRTMLSEVNATA----FTVPAL 263
>gi|13471028|ref|NP_102597.1| integral membrane protein [Mesorhizobium loti MAFF303099]
gi|14021772|dbj|BAB48383.1| probable integral membrane protein [Mesorhizobium loti MAFF303099]
Length = 301
Score = 73.4 bits (179), Expect = 4e-11, Method: Composition-based stats.
Identities = 41/265 (15%), Positives = 107/265 (40%), Gaps = 15/265 (5%)
Query: 67 SASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPII 126
+ S RT ++ ++ K++ + +L+ L AG S +S + +R +I
Sbjct: 11 AGRSDKRTAINRRMKLQESKISQEQVLIQLRKERGLD-AG-TSLFSPDRFRALRTQSGMI 68
Query: 127 -----FLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKR 181
FL++ + + + ++L + P + + + ++R
Sbjct: 69 MPLSKFLMITSGVAMAMTLVAIWHGLPLLMGLLLFVVLMPLVPVMVMRSKRKRRLKRFGM 128
Query: 182 AWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFEN 241
P+AL+L+ +++G + A+ V+ ++ P+ E + E+++ + A +
Sbjct: 129 QLPEALELITRGLKAGHPVPVAIAMVSREMPD---PIGTEFGVIADEVTYGSDLVSALNS 185
Query: 242 FYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVP 301
++R + + A+ G ++ + L L R + + +A S +++
Sbjct: 186 LFDRVGHEDLPLFITAVSIQSSSGGNLREILDGLALTIRERGKLRRKVRAISTEGRMSA- 244
Query: 302 MIIFFLPVLILVIIGPAILSIIDTM 326
I+ +P L + AI++++
Sbjct: 245 YILTAIPAL----LFAAIMALMPGF 265
>gi|149188859|ref|ZP_01867149.1| hypothetical Flp pilus assembly protein TadB [Vibrio shilonii AK1]
gi|148837279|gb|EDL54226.1| hypothetical Flp pilus assembly protein TadB [Vibrio shilonii AK1]
Length = 300
Score = 73.4 bits (179), Expect = 4e-11, Method: Composition-based stats.
Identities = 41/204 (20%), Positives = 78/204 (38%), Gaps = 14/204 (6%)
Query: 115 ILLVVRLVVPIIFLILGII---WIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNL 171
+L R + I I G I W + L L + ++ G+ L
Sbjct: 64 TILGPRSSLYIALYITGSIIASWYIVIELLSMTNSWLVLSLSLIFTVFGY-------RFL 116
Query: 172 VQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSF 231
V +R+ + +PDAL++L+ V +G S+ QA+ V E + P+ E L L
Sbjct: 117 VGRRRRDFENTFPDALNILMSAVTAGDSLMQAISYVGE---AMNNPIGREFKLMGDRLKL 173
Query: 232 LPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKA 291
+ +V + T + + G + L L+ R +E +K A
Sbjct: 174 GESPEVVLQRSCKNYPYPEFLFFTVTIRANIARGGQLKGVLARLIRVLVDSRTLEKKKMA 233
Query: 292 ASLGPKLTVPMIIFFLPVLILVII 315
+ +++ ++ P++ VI+
Sbjct: 234 MTSEARISAKIVAAI-PLIFTVIL 256
>gi|237733161|ref|ZP_04563642.1| predicted protein [Mollicutes bacterium D7]
gi|229383705|gb|EEO33796.1| predicted protein [Coprobacillus sp. D7]
Length = 283
Score = 73.4 bits (179), Expect = 4e-11, Method: Composition-based stats.
Identities = 28/209 (13%), Positives = 73/209 (34%), Gaps = 12/209 (5%)
Query: 114 NILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQ 173
+I ++V+ F ++ IF + ++ IG + P + +
Sbjct: 84 SIYKYRKIVLICTFAAFILVLIFV--------GFIPSILILAIGGLCSYVPDFRLKQDLS 135
Query: 174 KRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLP 233
+ PD + + + + +G+++ QA+ + G + +E + +A+
Sbjct: 136 MKYQIFDNTLPDYISRVSLAMNAGMNLSQAMIIATRALDG---DIKKEFVRFLADTERNQ 192
Query: 234 -NRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAA 292
+ + N R +I + G + + L + E L++ E++
Sbjct: 193 DDIAKPYINLRQRFPTKSCERFCSVVITGIKNGNKMSEILEKETNYINDETLIKMEEQGK 252
Query: 293 SLGPKLTVPMIIFFLPVLILVIIGPAILS 321
T F + ++I P +++
Sbjct: 253 KNEIVSTAISTGFIFIPITALLIAPIMMT 281
>gi|11498600|ref|NP_069828.1| hypothetical protein AF0995 [Archaeoglobus fulgidus DSM 4304]
gi|2649600|gb|AAB90246.1| conserved hypothetical protein [Archaeoglobus fulgidus DSM 4304]
Length = 651
Score = 73.4 bits (179), Expect = 5e-11, Method: Composition-based stats.
Identities = 34/212 (16%), Positives = 79/212 (37%), Gaps = 7/212 (3%)
Query: 117 LVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQ 176
+ ++ LI G++ + + I I + P L ++
Sbjct: 370 FAFSIPAALVILIYGLVVNPYIPGMDLKNWFFSYDDYIFISLMVVLGPFALFYELGRRGV 429
Query: 177 SSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQ 236
+ R P L L ESG+ I +A+ +A+ + PL +E+ A+L + +
Sbjct: 430 KTYMRLTPIFLSKLASANESGMPIYRAITMIAK---TDTSPLRKEIAKIKADLDWGISLS 486
Query: 237 VAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGP 296
A F NR ++ + L ++ + ++ + L + + S L+ E +
Sbjct: 487 DALVRFANRLKIFEISRTMTLLNEALKSTGNVTEVLMISAKDATSAELLRRE----RMTN 542
Query: 297 KLTVPMIIFFLPVLILVIIGPAILSIIDTMKD 328
+I++ + + I+ + + T+ +
Sbjct: 543 MFMYVIIVYIAFFVFIGIVYIISSTFLSTLAE 574
Score = 50.6 bits (120), Expect = 3e-04, Method: Composition-based stats.
Identities = 41/208 (19%), Positives = 76/208 (36%), Gaps = 17/208 (8%)
Query: 113 LNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLV 172
+ +RL PI W+F + Y L +G + + Y+G +++ S ++
Sbjct: 78 VPPFFNIRLPEPI-----ATYWLFYRPFV--YAGILAIGITLALYYLGNLIFAIYPSTVI 130
Query: 173 QKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSF- 231
R+S I R P A+ + + G+S+ Q L+ +A++ +S+E + E+
Sbjct: 131 SDRKSKINRILPHAIIFMYSLSKGGMSLVQILKALADN-HEVYGEVSKEASRILWEVEGL 189
Query: 232 LPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLV----SETRSERLMEA 287
+ + A + T D + LI G I R ++
Sbjct: 190 GKDLRTALAEAVDTTPSDNFKEFLHGLITIIDSGGDITRYFEERAEFYFERARQDQKSFL 249
Query: 288 EKKAASLGPKLTVPMIIFFLPVLILVII 315
E +T F L L+II
Sbjct: 250 EFLGLMAETYITA----FVAGPLFLIII 273
>gi|307261000|ref|ZP_07542682.1| Tight adherence protein B [Actinobacillus pleuropneumoniae serovar
12 str. 1096]
gi|306869302|gb|EFN01097.1| Tight adherence protein B [Actinobacillus pleuropneumoniae serovar
12 str. 1096]
Length = 199
Score = 73.4 bits (179), Expect = 5e-11, Method: Composition-based stats.
Identities = 34/162 (20%), Positives = 66/162 (40%), Gaps = 7/162 (4%)
Query: 154 ILIGYVGFCAPSVWISNLVQKRQSSIKRA-WPDALDLLLICVESGISIDQALRRVAEDIG 212
++ +GF I L Q+R + +P+ + +L SG+S+ QAL R +DI
Sbjct: 1 MIAEVIGFI---FVIWKLGQRRNRKLFNEKFPEVIQVLNSATSSGVSLLQALERCGKDIT 57
Query: 213 GQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSL 272
G P+ EE + L+ + F++ Y+R + + G + + +
Sbjct: 58 G---PIGEEFTIIYKRLARGEDVMAVFQDSYSRYPYKEFYFFISIIRTNLSRGGQMREVI 114
Query: 273 RVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVI 314
L ME +KKA + +++ ++ F L +
Sbjct: 115 SRLGRAIADSNKMEQKKKAMTSEARMSAAIVACFPVGFFLFM 156
>gi|197337544|ref|YP_002157816.1| Flp pilus assembly protein TadB [Vibrio fischeri MJ11]
gi|197314796|gb|ACH64245.1| Flp pilus assembly protein TadB [Vibrio fischeri MJ11]
Length = 307
Score = 73.4 bits (179), Expect = 5e-11, Method: Composition-based stats.
Identities = 41/223 (18%), Positives = 86/223 (38%), Gaps = 12/223 (5%)
Query: 93 LVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGA 152
L DE + L F + I + + +P+ L ++ I+ L+ + V
Sbjct: 53 LSDETLKQALLR--FFNNTYQQIDSLANIKIPVYCAFLIVLGIYINKSFLQANPIIIVTI 110
Query: 153 VILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIG 212
+IG + VW+ + R + ++PDAL+++ V +G I QA+ V +
Sbjct: 111 TEIIGLIFGV---VWLRKREKNR---FEESFPDALNMMSSAVSAGEGIMQAVVFVGRSLD 164
Query: 213 GQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSL 272
G+ + +E +L + F R + L S + G + + +
Sbjct: 165 GK---VGKEFKRMGEQLQLGESPDTVFRKSCERFPYPSFQFFIITLRTSMQRGGQLKEVM 221
Query: 273 RVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVII 315
+ L R +E +K A + + + ++ P + L ++
Sbjct: 222 KRLNRLMFGARAIEKKKLALTSEARASAKIVAAI-PFIFLFML 263
>gi|149927030|ref|ZP_01915288.1| type II secretion system protein [Limnobacter sp. MED105]
gi|149824251|gb|EDM83471.1| type II secretion system protein [Limnobacter sp. MED105]
Length = 302
Score = 73.4 bits (179), Expect = 5e-11, Method: Composition-based stats.
Identities = 38/244 (15%), Positives = 81/244 (33%), Gaps = 21/244 (8%)
Query: 84 VKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLE 143
++K L+ + + I + L +AG +++ L +R+ + + L G
Sbjct: 49 LEKDPLRKKYIPQWITDSLISAGL----TIDRTLGIRVAMFTLIPALAAFVFRG------ 98
Query: 144 YPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQA 203
+++ +G A ++ +KR+ + P+ LD ++ G S+ +
Sbjct: 99 ---AASAAGALILAILGIAA---YVLYRQRKRRLQMLGQLPNFLDGVVRVSAVGYSLTVS 152
Query: 204 LRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDR 263
+ PL E + L + A + + + +
Sbjct: 153 FNTA---LENAEQPLKEALGLAVQMQYAGLELDQAMHRLARVYGLSEFKLIASVVALALN 209
Query: 264 YGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVL--ILVIIGPAILS 321
YG L L R E A S +++ + P L I++ + PA L
Sbjct: 210 YGGKSDILLGRLAQYLRDREQHHQEMLAMSSEARMSAVFMCCLTPALAGIILTLNPAYLG 269
Query: 322 IIDT 325
+
Sbjct: 270 TMWN 273
>gi|302384578|ref|YP_003820400.1| hypothetical protein Closa_0134 [Clostridium saccharolyticum WM1]
gi|302195206|gb|ADL02777.1| conserved hypothetical protein [Clostridium saccharolyticum WM1]
Length = 420
Score = 73.4 bits (179), Expect = 5e-11, Method: Composition-based stats.
Identities = 36/208 (17%), Positives = 78/208 (37%), Gaps = 20/208 (9%)
Query: 120 RLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSI 179
RL +P +++ + + + L + L+ G N + R+ +
Sbjct: 214 RLSLPPVYMGERLTYFQPEETDYRILPVLGILLAALLPLKG----EFDRKNQARVRERQL 269
Query: 180 KRAWPDALDLLLICVESGISIDQALRRV-------AEDIGGQSVPLSEEMLLTIAELSFL 232
+ + + L++ + +G+++ A R+ + P EEM+ T A+L
Sbjct: 270 LFDYSEVVSKLVVYMGAGLTVRGAWERITAGYKDGVKQGKRSVRPAYEEMVKTAAQLGSG 329
Query: 233 PNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTS-IGDSLRVLVSETRSERLMEAEKKA 291
+ A+ F R + + L QS + G+ + +L + + +R A+K
Sbjct: 330 LSEGKAYSEFGRRCGVQVYIKLSALLEQSQKNGSRQLRPALELEMVSAFEQRKNLAKKLG 389
Query: 292 ASLGPKLT--------VPMIIFFLPVLI 311
G KL V M++ +P +
Sbjct: 390 EEAGTKLLLPLLMMLGVVMVMIVVPAFL 417
>gi|269105135|ref|ZP_06157829.1| flp pilus assembly protein TadB [Photobacterium damselae subsp.
damselae CIP 102761]
gi|312621085|ref|YP_003993813.1| flp pilus assembly protein tadb [Photobacterium damselae subsp.
damselae]
gi|268160585|gb|EEZ39084.1| flp pilus assembly protein TadB [Photobacterium damselae subsp.
damselae CIP 102761]
gi|311872806|emb|CBX86897.1| Flp pilus assembly protein TadB [Photobacterium damselae subsp.
damselae]
Length = 306
Score = 73.0 bits (178), Expect = 5e-11, Method: Composition-based stats.
Identities = 46/225 (20%), Positives = 88/225 (39%), Gaps = 12/225 (5%)
Query: 91 AILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRV 150
L DE+ + KL+ A + L V+L++ L+L +I + + E F +
Sbjct: 51 TSLSDESFIQKLKRASNNTYNQLGDYPAVKLLIYFTLLLLFSFYI-NQNFIRENIFVVAF 109
Query: 151 GAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAED 210
I+ G IS L ++ + + ++PDAL++L + SG SI A+ V +
Sbjct: 110 IIEIVGILWG-------ISWLQKRERKKFEESFPDALNILTSAISSGESIIHAIVFVGKT 162
Query: 211 IGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGD 270
+ G + E L L + F R + L + G + D
Sbjct: 163 LDG---AVGNEFSLMGERLQLGESPDNVFRKSCMRFPYPSFQFFVITLRANMHRGGQLKD 219
Query: 271 SLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVII 315
+ L R +E +K A + +++ ++ P + L ++
Sbjct: 220 VMSRLNRIMFDARAIEKKKYALTSEARISAKIVAAI-PFIFLFML 263
>gi|327334809|gb|EGE76520.1| putative bacterial type II secretion system protein F domain
protein [Propionibacterium acnes HL097PA1]
Length = 249
Score = 73.0 bits (178), Expect = 5e-11, Method: Composition-based stats.
Identities = 39/196 (19%), Positives = 86/196 (43%), Gaps = 6/196 (3%)
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
++ G++ + +PF G +L+G V + S+ ++ + P+AL
Sbjct: 56 VLAGLVAACAVLIGVPWPFPAAAGLSVLVGTVMWWGFGRLESSGHRRMEQHRAAQLPEAL 115
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQ 247
+L +E+G+ + A+ VAE + G P +E++ + L+ A+ + +
Sbjct: 116 LMLSSAMEAGLPLRSAVTTVAESLEG---PCAEDLRRLASSLAAGVPDSRAWNDLAS--- 169
Query: 248 MDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFL 307
++ R+ Q + ++ G I + L ++ + + EK+A G P++ L
Sbjct: 170 VEVWRDPAQDVSRAVDSGEGISELLSAHAAQLQVAAAEKTEKRARKAGVDAIGPLVCCHL 229
Query: 308 PVLILVIIGPAILSII 323
P +LV + P I ++
Sbjct: 230 PAFLLVGVVPIIAGMV 245
>gi|293604634|ref|ZP_06687036.1| type II secretion system protein [Achromobacter piechaudii ATCC
43553]
gi|292816965|gb|EFF76044.1| type II secretion system protein [Achromobacter piechaudii ATCC
43553]
Length = 272
Score = 73.0 bits (178), Expect = 5e-11, Method: Composition-based stats.
Identities = 31/136 (22%), Positives = 61/136 (44%), Gaps = 3/136 (2%)
Query: 163 APSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEM 222
P + +S L ++R ++ P AL +L + +G+++ LR V E G PL++E
Sbjct: 81 IPRLLVSQLRRRRAHRFEQQLPMALLMLAAAMRAGVALTTGLRHVVEQSGA---PLAQEF 137
Query: 223 LLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSE 282
L + E A EN R D A+ + + G ++ ++L + R+
Sbjct: 138 GLMLREQRLGVPWDAALENLQTRMPGDSTSLVVAAMRIASQTGGNLAEALESIAQTLRAR 197
Query: 283 RLMEAEKKAASLGPKL 298
++A+ +A + +L
Sbjct: 198 LQLQAKLQALTSQGRL 213
>gi|59711124|ref|YP_203900.1| TadB-like protein involved in pilus formation and/or protein
secretion [Vibrio fischeri ES114]
gi|59479225|gb|AAW85012.1| TadB-like protein involved in pilus formation and/or protein
secretion [Vibrio fischeri ES114]
Length = 305
Score = 73.0 bits (178), Expect = 6e-11, Method: Composition-based stats.
Identities = 34/186 (18%), Positives = 69/186 (37%), Gaps = 9/186 (4%)
Query: 118 VVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQS 177
L + + +I + ++ + V I+IG + VW+ +K +
Sbjct: 75 GAALKLVFSICVFALIGLLINRSMIHASPYIVVFIAIVIGLIWGY---VWLQ---EKEKK 128
Query: 178 SIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQV 237
+PDAL++L V +G SI A+ V + + G + +E + L +
Sbjct: 129 QFNERFPDALNMLSSAVSAGESITHAIAFVGKKLEG---DVGKEFKIMGERLQLGESPDE 185
Query: 238 AFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPK 297
F+ R R L + G + D + L R +E +K A + +
Sbjct: 186 VFKKSCVRFPYPAFRFFVITLRANMNRGGQLRDVISRLNRLMFDARAVERKKYALTSEAR 245
Query: 298 LTVPMI 303
++ ++
Sbjct: 246 ISAKIV 251
>gi|212224828|ref|YP_002308064.1| hypothetical protein TON_1677 [Thermococcus onnurineus NA1]
gi|212009785|gb|ACJ17167.1| conserved hypothetical membrane protein [Thermococcus onnurineus
NA1]
Length = 304
Score = 73.0 bits (178), Expect = 6e-11, Method: Composition-based stats.
Identities = 43/201 (21%), Positives = 84/201 (41%), Gaps = 17/201 (8%)
Query: 125 IIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWP 184
++ ++GII D L + L + +G F P + KR +++ P
Sbjct: 46 VVSFLVGIIGALVVDLFLTKLYALAAFLALFLGMA-FGYPYW----KITKRIEEMEKMLP 100
Query: 185 DALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYN 244
DA L + +GIS +AL + + L+EE T+AE+ + A F
Sbjct: 101 DAFFYLASSLRAGISFSEALEELTT---AKFGALTEEFKKTVAEIKKGRSTVEALRAFAI 157
Query: 245 RTQ-MDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMI 303
R + + + +I++ G + D L + ++ R ++ E+KA++ + ++
Sbjct: 158 RNRKSTVIYRSMMIIIEAIERGAPMSDILVFVGNDVREILRIKKERKAST-----GMQVM 212
Query: 304 IFFLPVLILVIIGPAILSIID 324
F + + GP IL I+
Sbjct: 213 FFIVTSGFI---GPLILGIVS 230
>gi|330862290|emb|CBX72451.1| hypothetical protein YEW_HH31830 [Yersinia enterocolitica W22703]
Length = 293
Score = 73.0 bits (178), Expect = 6e-11, Method: Composition-based stats.
Identities = 37/205 (18%), Positives = 85/205 (41%), Gaps = 9/205 (4%)
Query: 125 IIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWP 184
I+ I+ + I+ + L + + I++ + F + ++ K+ +P
Sbjct: 69 ILMPIVYSVSIYSVNYFLFHFNNIIALLFIMVSVICFQ-----LRLSRKRYYRFFKQNFP 123
Query: 185 DALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYN 244
++L ++ + SG SI+Q L R ++I G PL E L L+ + + F + Y
Sbjct: 124 ESLLMINMAASSGASINQILERCGQEISG---PLGVEFNLVCRRLNVGESPESVFYDSYQ 180
Query: 245 RTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMII 304
R + ++ + + G + + L + E +K + +++V II
Sbjct: 181 RFKYPEFYFLITIILLNLQQGGQLRELTSRLSEVVNKNKATEQKKAVMTAQIRMSV-NII 239
Query: 305 FFLPVLILVIIGPAILSIIDTMKDH 329
+P+ +++ + I++M H
Sbjct: 240 SIMPIAFSLLLYFLDPTTIESMWHH 264
>gi|307332438|ref|ZP_07611502.1| Type II secretion system F domain protein [Streptomyces
violaceusniger Tu 4113]
gi|306881907|gb|EFN13029.1| Type II secretion system F domain protein [Streptomyces
violaceusniger Tu 4113]
Length = 312
Score = 73.0 bits (178), Expect = 7e-11, Method: Composition-based stats.
Identities = 38/259 (14%), Positives = 83/259 (32%), Gaps = 19/259 (7%)
Query: 56 RKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNI 115
++QQ + + S + L V + L+ + + +L A G
Sbjct: 30 KEQQRALIDRLSETGPLPGTGRARRFAGVDR-RLRTTSLGRKLELRLAATGLEITPGEFF 88
Query: 116 LLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKR 175
+ + + + F + + ++ QKR
Sbjct: 89 VYTAGAAAGLWLIAASFLAAFFGP---------------IAAVIAVWGAFAFLGWQRQKR 133
Query: 176 QSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNR 235
P+ +L ++G+++ AL A+++ P EE+ A+L+ +
Sbjct: 134 IERFINQLPELSRILANATQAGLALRTALGMAADEMEA---PAGEELAKVAAKLAVGHSI 190
Query: 236 QVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLG 295
A E R + L+ S+R G ++ SLR L + E +
Sbjct: 191 DDALEELAERLPSRELVVLVTTLVLSNRAGGTVVSSLRNLTQTLEERKETRREVRTQLSQ 250
Query: 296 PKLTVPMIIFFLPVLILVI 314
+T ++ +L++
Sbjct: 251 VTVTAYVVPLLGIGTLLLM 269
>gi|126179944|ref|YP_001047909.1| type II secretion system protein [Methanoculleus marisnigri JR1]
gi|125862738|gb|ABN57927.1| type II secretion system protein [Methanoculleus marisnigri JR1]
Length = 349
Score = 72.6 bits (177), Expect = 7e-11, Method: Composition-based stats.
Identities = 32/213 (15%), Positives = 77/213 (36%), Gaps = 3/213 (1%)
Query: 113 LNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLV 172
+L V + V ++ I G + + + + V + + P +
Sbjct: 67 PYTVLFVSVPVALLLFIGGFVSMVTSYGIGALFTTTMIDDVFVFALLIAIVPLGLLDFKE 126
Query: 173 QKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFL 232
R SS++ + P+ + +SG+++ A+ V+E G+ L+ + E+S+
Sbjct: 127 AWRVSSVEASLPNFFRDVAGMNDSGMTLPHAIHIVSE---GEYGALTPHIRKLDTEMSWG 183
Query: 233 PNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAA 292
A F + + + G + + LR + ++ E+K
Sbjct: 184 VPFVEAIRRFGKTVNTPLAERSVDLIAHASSAGGDVSEVLRAAAHDAYEFFNLKTERKNG 243
Query: 293 SLGPKLTVPMIIFFLPVLILVIIGPAILSIIDT 325
+ + + M F +I V+ G + ++ +
Sbjct: 244 MMIYMIIILMSFFVFLFVIGVLSGTFLTTMAEA 276
>gi|256397305|ref|YP_003118869.1| type II secretion system protein [Catenulispora acidiphila DSM
44928]
gi|256363531|gb|ACU77028.1| type II secretion system protein [Catenulispora acidiphila DSM
44928]
Length = 304
Score = 72.6 bits (177), Expect = 7e-11, Method: Composition-based stats.
Identities = 53/309 (17%), Positives = 116/309 (37%), Gaps = 10/309 (3%)
Query: 19 TTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSK 78
A ++ L ++I +L G + M ++A + LR+ Q+D A + + +
Sbjct: 5 VLAGALVGLGLFLLIRALIPGRPDP-MAAIA-RIDALRQHTSLGPQQDQAPPKGLAKLRE 62
Query: 79 SLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILG-IIWIFG 137
L + ++ ++ L + S+ L +L++ + +I G ++
Sbjct: 63 DLGASMNDFYIRQGWQIRSLRADLA----ILDRSVEQFLAAKLLLAALGIIFGPFVFAAV 118
Query: 138 YDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESG 197
Y L + V +L G V F P + + +++ +R LDL+ + + G
Sbjct: 119 YVLGLHLTPTIPVWLALLFGGVFFLLPDLEVKGQAAEKRRDFRRVLGAYLDLVAMNLAGG 178
Query: 198 ISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQA 257
+ +AL AE G L ++ A + +D +++ A
Sbjct: 179 RGLPEALMAAAEVSDGW--ALRRIRDALTDARVTGISQWNALSQLGDALDVDELKDLGAA 236
Query: 258 LIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGP 317
L G + +SL R L E E A + + V ++ ++ ++ P
Sbjct: 237 LALVAEDGAKVRESLAARAETMRHRELSEIEGAAGAKSQSMLVAQMLLCA-GFMVFLLYP 295
Query: 318 AILSIIDTM 326
A+ ++ ++
Sbjct: 296 AMARVMGSI 304
>gi|294495979|ref|YP_003542472.1| type II secretion system F domain protein [Methanohalophilus mahii
DSM 5219]
gi|292666978|gb|ADE36827.1| Type II secretion system F domain protein [Methanohalophilus mahii
DSM 5219]
Length = 741
Score = 72.6 bits (177), Expect = 7e-11, Method: Composition-based stats.
Identities = 32/167 (19%), Positives = 68/167 (40%), Gaps = 4/167 (2%)
Query: 124 PIIFLILGIIWIFGY-DKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRA 182
PI I+ I + D L + ++ G+ P +R+ +++
Sbjct: 471 PIGACIIIIPLLLNMNDGGLPSGIIDFIDDYLVFGFFATVVPLTIFYEKKNRRKKKLEQN 530
Query: 183 WPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENF 242
PD L L E+G+++ +++ ++ LS+E+ ++S+ N + F
Sbjct: 531 IPDLLKKLASTNETGMTLQDSIKLMSRKETDT---LSKEIKKVWRDISWGVNINDSLVRF 587
Query: 243 YNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEK 289
NR + V + + +++ IG L V + SE+ M+ E+
Sbjct: 588 ANRLRTQVVARSFTLITKANESSGDIGQVLLVASRDASSEQDMKRER 634
Score = 57.6 bits (138), Expect = 3e-06, Method: Composition-based stats.
Identities = 28/216 (12%), Positives = 76/216 (35%), Gaps = 28/216 (12%)
Query: 96 ENIVNKLRAAGFR--SEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLR---- 149
N+ +L+ A E ++ + +V I +LG ++ + ++ P QL
Sbjct: 101 SNLQLQLKQARIPVSYEMYVSAGIFYSVVAGIFGALLGFLFAYLIFTIIGLPDQLTGIQV 160
Query: 150 --------------------VGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDL 189
+ +++G + + + + +R+++I + P A+
Sbjct: 161 NSSFAWLLAYRDIIIGFFIVIFLTLMLGGITYVLFMFYPAFQAGERKNNIDQQLPYAVTF 220
Query: 190 LLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELS-FLPNRQVAFENFYNRTQM 248
+ G++I + +A ++ E+ + ++ F + + A N + T
Sbjct: 221 MYALTRGGMNILDVFKSLA-KAEDTYGEVAVEVDTIVKDMEYFGHDIRTALANISSTTPS 279
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERL 284
D ++ L+ G I + + + +
Sbjct: 280 DRFQDLIYNLVTIIDSGGDIAKYFQDKSDQYLQKSM 315
>gi|255658707|ref|ZP_05404116.1| type II secretion system protein F domain protein [Mitsuokella
multacida DSM 20544]
gi|260849094|gb|EEX69101.1| type II secretion system protein F domain protein [Mitsuokella
multacida DSM 20544]
Length = 319
Score = 72.6 bits (177), Expect = 8e-11, Method: Composition-based stats.
Identities = 26/173 (15%), Positives = 63/173 (36%), Gaps = 4/173 (2%)
Query: 143 EYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQ 202
+ L+ + +VG + +++R+ D L ++ + +G S Q
Sbjct: 108 TFLVTLKGAMFFVGAFVGILMGFALLGLRIRRRRKKFTNQLGDMLTMVANALRAGFSFMQ 167
Query: 203 ALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSD 262
A ++ ++ P+ E+ L + E++ + A +N R A++
Sbjct: 168 AFELISREM---DAPMGREVQLVVNEVNLGNTLESALDNMQRRVASPDFELVVTAVLIQR 224
Query: 263 RYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVII 315
+ G + L + M E + +L+ +++ LP + I+
Sbjct: 225 QVGGDLASILDTISETIAERVRMRREVMTLTAQGRLSG-IVLAILPFAMAGIL 276
>gi|197336186|ref|YP_002155273.1| Flp pilus assembly protein TadB [Vibrio fischeri MJ11]
gi|197317676|gb|ACH67123.1| Flp pilus assembly protein TadB [Vibrio fischeri MJ11]
Length = 305
Score = 72.6 bits (177), Expect = 8e-11, Method: Composition-based stats.
Identities = 33/186 (17%), Positives = 67/186 (36%), Gaps = 9/186 (4%)
Query: 118 VVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQS 177
L + + +I + ++ + V I+ G + VW+ +K
Sbjct: 75 GAALKLVFSVCVFALIGLLINRSMIHASPYIVVLISIVAGLIWGY---VWLQEREKK--- 128
Query: 178 SIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQV 237
+PDAL++L V +G SI A+ V + + G + +E + L +
Sbjct: 129 QFNERFPDALNMLSSAVSAGESITHAIAFVGKKLEG---DVGKEFKIMGERLQLGESPDE 185
Query: 238 AFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPK 297
F+ R R L + G + D + L R +E +K A + +
Sbjct: 186 VFKKSCVRFPYPAFRFFVITLRANMNRGGQLRDVISRLNRLMFDARAVERKKYALTSEAR 245
Query: 298 LTVPMI 303
++ ++
Sbjct: 246 ISAKIV 251
>gi|318604218|emb|CBY25716.1| flp pilus assembly protein TadB [Yersinia enterocolitica subsp.
palearctica Y11]
Length = 293
Score = 72.6 bits (177), Expect = 8e-11, Method: Composition-based stats.
Identities = 37/205 (18%), Positives = 85/205 (41%), Gaps = 9/205 (4%)
Query: 125 IIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWP 184
I+ I+ + I+ + L + + I++ + F + ++ K+ +P
Sbjct: 69 ILMPIVYSVSIYSVNYFLFHFNNIIALLFIMVSVICFQ-----LRLSRKRYYRFFKQNFP 123
Query: 185 DALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYN 244
++L ++ + SG SI+Q L R ++I G PL E L L+ + + F + Y
Sbjct: 124 ESLLMINMAASSGASINQILERCGQEISG---PLGVEFNLVCRRLNVGESPESVFYDSYR 180
Query: 245 RTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMII 304
R + ++ + + G + + L + E +K + +++V II
Sbjct: 181 RFKYPEFYFLITIILLNLQQGGQLRELTSRLSEVVNKNKATEQKKAVMTAQIRMSV-NII 239
Query: 305 FFLPVLILVIIGPAILSIIDTMKDH 329
+P+ +++ + I++M H
Sbjct: 240 SIMPIAFSLLLYFLDPTTIESMWHH 264
>gi|225386976|ref|ZP_03756740.1| hypothetical protein CLOSTASPAR_00726 [Clostridium asparagiforme
DSM 15981]
gi|225046988|gb|EEG57234.1| hypothetical protein CLOSTASPAR_00726 [Clostridium asparagiforme
DSM 15981]
Length = 416
Score = 72.6 bits (177), Expect = 8e-11, Method: Composition-based stats.
Identities = 26/136 (19%), Positives = 56/136 (41%), Gaps = 8/136 (5%)
Query: 170 NLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQ-------SVPLSEEM 222
++R++ + +P+ + L+I + +G+++ A R+A D + EEM
Sbjct: 256 KAAKQRENQLLMDYPEVVSKLMIFLGAGMTVRTAWERIAGDYRDMLGSGRRTPRHVYEEM 315
Query: 223 LLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGT-SIGDSLRVLVSETRS 281
T ++S A+ F R + L Q+ + G+ ++ + LR ++E
Sbjct: 316 YETCCQMSRGVPEGQAYGEFGRRCGLLPYMKLCSLLEQNRKNGSRNVRELLRAEMTEAFE 375
Query: 282 ERLMEAEKKAASLGPK 297
R A + G +
Sbjct: 376 LRKHGARRMGEEAGTR 391
>gi|21223383|ref|NP_629162.1| integral membrane protein [Streptomyces coelicolor A3(2)]
gi|8218172|emb|CAB92603.1| putative integral membrane protein [Streptomyces coelicolor A3(2)]
Length = 316
Score = 72.6 bits (177), Expect = 8e-11, Method: Composition-based stats.
Identities = 28/175 (16%), Positives = 63/175 (36%), Gaps = 8/175 (4%)
Query: 125 IIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWP 184
+++ + ++ + PF + ++ IG +++ QKR P
Sbjct: 92 FAYMLATVAGLWLIGQAALAPFFGPLAGLLGIGVA-----IQFLNWQRQKRIEKFINQLP 146
Query: 185 DALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYN 244
+ +L ++G+++ A+ AE++ P EE+ +L+ + A
Sbjct: 147 ELARILANATQAGLALRTAIGMAAEELEA---PAGEELGKVADQLAIGASMDDALGELAG 203
Query: 245 RTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLT 299
R + L+ S+R G + +LR L + E + +T
Sbjct: 204 RLPSRELVVLVTTLVLSNRAGGQVVGALRNLTETLEERKETRREVRTQLSQVTMT 258
>gi|256393178|ref|YP_003114742.1| type II secretion system protein [Catenulispora acidiphila DSM
44928]
gi|256359404|gb|ACU72901.1| type II secretion system protein [Catenulispora acidiphila DSM
44928]
Length = 297
Score = 72.6 bits (177), Expect = 8e-11, Method: Composition-based stats.
Identities = 35/173 (20%), Positives = 74/173 (42%), Gaps = 3/173 (1%)
Query: 154 ILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGG 213
+ GF AP I +R+ + RA LDL+ + + +G ++ AL+ A +G
Sbjct: 128 VAFAAAGFLAPDYVIRAEAAERRKDMVRALSAFLDLVTLSLAAGGGVEAALKE-ASLVGD 186
Query: 214 QSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLR 273
+ L AE+S + + + +L + G + SL
Sbjct: 187 GWAFTALRKALATAEISRVAPW-QTLGQLGAELDVPALGELAASLALAGSEGAKVRASLS 245
Query: 274 VLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
+ R+ L EA+ +A + ++++P+++ L +L+I PA+ +++ +
Sbjct: 246 AKAATLRANGLAEAQGEANAASERMSLPVVVMGL-GFMLLIGYPAMAHVMNGL 297
>gi|168699470|ref|ZP_02731747.1| hypothetical protein GobsU_08112 [Gemmata obscuriglobus UQM 2246]
Length = 330
Score = 72.6 bits (177), Expect = 9e-11, Method: Composition-based stats.
Identities = 24/137 (17%), Positives = 55/137 (40%), Gaps = 9/137 (6%)
Query: 177 SSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQ 236
R A +L+ + +G S+ +A R G PL+EE + ++ +
Sbjct: 156 EKYLRQIAGAFELMARVIRTGQSVTEAFRAAV---GAFDDPLAEEFGRCVHQIEHGIRPE 212
Query: 237 VAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGP 296
AF +R + +R A+ + G ++ + L L R+ + + +A +
Sbjct: 213 AAFREMSDRADVLELRIFVVAMTIQRQTGGNLSEVLDRLAGVVRARLRVRQKIRALTAEG 272
Query: 297 KL------TVPMIIFFL 307
++ +P+++F +
Sbjct: 273 RMQSRTLTVLPVVVFAM 289
>gi|256785514|ref|ZP_05523945.1| integral membrane protein [Streptomyces lividans TK24]
gi|289769410|ref|ZP_06528788.1| integral membrane protein [Streptomyces lividans TK24]
gi|289699609|gb|EFD67038.1| integral membrane protein [Streptomyces lividans TK24]
Length = 316
Score = 72.6 bits (177), Expect = 9e-11, Method: Composition-based stats.
Identities = 28/175 (16%), Positives = 63/175 (36%), Gaps = 8/175 (4%)
Query: 125 IIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWP 184
+++ + ++ + PF + ++ IG +++ QKR P
Sbjct: 92 FAYMLATVAGLWLIGQAALAPFFGPLAGLLGIGVA-----IQFLNWQRQKRIEKFINQLP 146
Query: 185 DALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYN 244
+ +L ++G+++ A+ AE++ P EE+ +L+ + A
Sbjct: 147 ELARILANATQAGLALRTAIGMAAEELEA---PAGEELGKVADQLAIGASMDDALGELAG 203
Query: 245 RTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLT 299
R + L+ S+R G + +LR L + E + +T
Sbjct: 204 RLPSRELVVLVTTLVLSNRAGGQVVGALRNLTETLEERKETRREVRTQLSQVTMT 258
>gi|326331491|ref|ZP_08197781.1| putative integral membrane protein [Nocardioidaceae bacterium
Broad-1]
gi|325950747|gb|EGD42797.1| putative integral membrane protein [Nocardioidaceae bacterium
Broad-1]
Length = 300
Score = 72.2 bits (176), Expect = 9e-11, Method: Composition-based stats.
Identities = 36/214 (16%), Positives = 89/214 (41%), Gaps = 6/214 (2%)
Query: 112 SLNILLVVRLVVPIIFLILG-IIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISN 170
SL +L+ ++ L + ++ +F +E P+ + + A I + + F P+ +
Sbjct: 88 SLARFYGEKLLFALLGLTIPPLLTVFFGVIGIELPWTIPIVASIGLAVLMFFLPNYNAVD 147
Query: 171 LVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGG-QSVPLSEEMLLTIAEL 229
+K + RA ++++ + +G + Q++ A LSEE+ +
Sbjct: 148 DAKKARLEFTRALGAYIEMVALERNTGSGVRQSMEAAANVCTSWVFTRLSEELTRSRW-- 205
Query: 230 SFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEK 289
A + + + + S G S+ +LR + R+ L +
Sbjct: 206 -SGLPPWDALHALGVELGLPELDDFADIMRLSGEEGASVYATLRARSNAMRTAMLNDELT 264
Query: 290 KAASLGPKLTVPMIIFFLPVLILVIIGPAILSII 323
+A + G ++++P + + V + +++ PA+L ++
Sbjct: 265 EANATGERMSIPSSLLGV-VFMGLLLAPALLRMV 297
>gi|159039934|ref|YP_001539187.1| type II secretion system protein [Salinispora arenicola CNS-205]
gi|157918769|gb|ABW00197.1| type II secretion system protein [Salinispora arenicola CNS-205]
Length = 255
Score = 72.2 bits (176), Expect = 9e-11, Method: Composition-based stats.
Identities = 37/142 (26%), Positives = 66/142 (46%), Gaps = 6/142 (4%)
Query: 182 AWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFEN 241
+ P A DLL + +G +D+++ VAE + G PL+E + L L A+
Sbjct: 116 SLPLAADLLASVMRAGAPVDRSVLAVAEALDG---PLAERLALVGRLLRLGAEPAEAWST 172
Query: 242 FYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVP 301
+ A ++S G ++ +L L + R++R E E KA G + +P
Sbjct: 173 LAA---VPGAERLIAAALRSAASGATLAGALTRLADDLRADRATEVEAKARRSGVLIVLP 229
Query: 302 MIIFFLPVLILVIIGPAILSII 323
+ + FLP IL + P I++++
Sbjct: 230 LGLCFLPAFILAGLMPVIVAVL 251
>gi|197106462|ref|YP_002131839.1| Flp pilus assembly protein TadB [Phenylobacterium zucineum HLK1]
gi|196479882|gb|ACG79410.1| Flp pilus assembly protein TadB [Phenylobacterium zucineum HLK1]
Length = 305
Score = 72.2 bits (176), Expect = 1e-10, Method: Composition-based stats.
Identities = 30/155 (19%), Positives = 62/155 (40%), Gaps = 7/155 (4%)
Query: 174 KRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLP 233
+R+ + + +A+ L++ + +G+ + + + V +I G P+ EE E+
Sbjct: 125 RRRGRFLKTFAEAIALIVRGLRAGLPVTETVGVVGREIEG---PVGEEFRRVADEVRLGA 181
Query: 234 NRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAAS 293
+ A R + L G ++ +SL L R + M + KA S
Sbjct: 182 PIEGAMGEAARRIGLPEFDFLAICLAVQRETGGNLAESLENLEHILRRRQQMRLKIKAMS 241
Query: 294 LGPKLTVPMIIFFLP---VLILVIIGPAILSIIDT 325
+ +II LP +++ I P + ++ T
Sbjct: 242 SEATASA-LIIGVLPFAMAVLMSIASPDYMRVLFT 275
>gi|134298674|ref|YP_001112170.1| hypothetical protein Dred_0807 [Desulfotomaculum reducens MI-1]
gi|134051374|gb|ABO49345.1| hypothetical protein Dred_0807 [Desulfotomaculum reducens MI-1]
Length = 290
Score = 72.2 bits (176), Expect = 1e-10, Method: Composition-based stats.
Identities = 47/273 (17%), Positives = 99/273 (36%), Gaps = 26/273 (9%)
Query: 61 TSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVR 120
L SK L ++K L + +L + I N L AG + + +
Sbjct: 34 ERLSGQKNKLTFLQLFSKKLPEYLKALGI--VLDFKKINNWLVLAGRPFKLNAEEFVGAY 91
Query: 121 LVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVW----ISNLVQKRQ 176
+V+ ++ Y LIG++ F PSV I + QK +
Sbjct: 92 IVLVAGTGVVA------------YTMINLGLVSKLIGFLFFAVPSVVPYFHIESEAQKAR 139
Query: 177 SSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQ 236
I + + + + V +G+ ++ L + A + G L+ + ++ E+
Sbjct: 140 DKINTELINLIYSMDLGVSNGLD-EKLLIQWAAEGKGL---LASMLRESLKEVDLGGEEY 195
Query: 237 VAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGP 296
+ F + + +++ G I SL L + R R + +K
Sbjct: 196 LIFYRLAEDYNVPDAEEVGMLIKHAEKNGVDISQSLYDLARDFRYRRDSDLDKNIGK--V 253
Query: 297 KLTVPM--IIFFLPVLILVIIGPAILSIIDTMK 327
KLT+ + ++ ++ + +I GP ++ + +
Sbjct: 254 KLTIGVYVVLAYMVMTFALIAGPIMVEYLPYLS 286
>gi|297193033|ref|ZP_06910431.1| integral membrane protein [Streptomyces pristinaespiralis ATCC
25486]
gi|197719837|gb|EDY63745.1| integral membrane protein [Streptomyces pristinaespiralis ATCC
25486]
Length = 262
Score = 72.2 bits (176), Expect = 1e-10, Method: Composition-based stats.
Identities = 34/151 (22%), Positives = 60/151 (39%), Gaps = 6/151 (3%)
Query: 176 QSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNR 235
+ R P A DL+ C+ +G S +A V E +GG P+ + T A+L
Sbjct: 114 RKEAARQLPLAADLMAACISAGASPREAAEAVGESLGG---PVGAGLARTAAQLRLGAEP 170
Query: 236 QVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLG 295
A+ F + + L ++D G D + L R+ER +
Sbjct: 171 SPAWGCFGE---IPGAEPLARCLERADSAGAPAADPVSRLAGRLRAERARAVAGRGRRAQ 227
Query: 296 PKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
+T P+ + FLP + V + P ++ + +
Sbjct: 228 VLITAPVGLCFLPAFLAVGVAPVVIGLAGGL 258
>gi|313835700|gb|EFS73414.1| type II secretion system F domain protein [Propionibacterium acnes
HL037PA2]
gi|314928371|gb|EFS92202.1| type II secretion system F domain protein [Propionibacterium acnes
HL044PA1]
gi|314970223|gb|EFT14321.1| type II secretion system F domain protein [Propionibacterium acnes
HL037PA3]
gi|328908048|gb|EGG27807.1| LOW QUALITY PROTEIN: Type II secretion system F domain protein
[Propionibacterium sp. P08]
Length = 307
Score = 71.8 bits (175), Expect = 1e-10, Method: Composition-based stats.
Identities = 29/165 (17%), Positives = 57/165 (34%), Gaps = 6/165 (3%)
Query: 124 PIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAW 183
++ + ++ I +L+G G + Q+R +
Sbjct: 80 AVVAAVTILVSILVAVVFYNMLAPALAVVGVLLGLAGLWES---VRRSQQRRTAKFVNQL 136
Query: 184 PDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFY 243
P+ LL +G+S+ A+ V++++G + E L F + Q A +
Sbjct: 137 PELARLLANASHAGLSLPTAIAMVSDELGEPAR---SEFAQVENRLRFGASLQTALDELA 193
Query: 244 NRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAE 288
+ + V LI S R G S+ +LR + + E
Sbjct: 194 SHVRSREVTVLMSTLIVSARSGGSLVTALRGIADSLEERKETRRE 238
>gi|33152382|ref|NP_873735.1| tight adherence protein B [Haemophilus ducreyi 35000HP]
gi|21326711|gb|AAL92471.1| TadB [Haemophilus ducreyi]
gi|33148605|gb|AAP96124.1| tight adherence protein B [Haemophilus ducreyi 35000HP]
Length = 295
Score = 71.8 bits (175), Expect = 1e-10, Method: Composition-based stats.
Identities = 34/179 (18%), Positives = 71/179 (39%), Gaps = 7/179 (3%)
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRA-WPDA 186
L++ G + + ++ +GF + + + Q+R + +P+
Sbjct: 71 LMIHFAIFVGLYHANAALIRFDNQSFMIAELIGFV---MLVWKMGQRRNKKMFDETFPEV 127
Query: 187 LDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRT 246
+ +L SG+S+ QA+ R +DI G PL +E L L+ + F++ Y+R
Sbjct: 128 IQILNAATSSGVSLLQAMERCGKDIRG---PLGQEFTLIYKRLARGEDAMAVFQDSYSRY 184
Query: 247 QMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
+ + G I + + L ME +KKA + +++V ++
Sbjct: 185 PYKSFYFFICIIRTNLSRGGQIREVVSRLGRAIADANKMEQKKKAMTAEARMSVMIVAC 243
>gi|20808465|ref|NP_623636.1| hypothetical protein TTE2066 [Thermoanaerobacter tengcongensis MB4]
gi|20517083|gb|AAM25240.1| hypothetical protein TTE2066 [Thermoanaerobacter tengcongensis MB4]
Length = 248
Score = 71.4 bits (174), Expect = 2e-10, Method: Composition-based stats.
Identities = 38/215 (17%), Positives = 92/215 (42%), Gaps = 12/215 (5%)
Query: 117 LVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQ 176
L+ + + F ++ +++ F + +L PF + + +I Y+ + + V K +
Sbjct: 44 LLSTFSLVLGFSLILLLFSFIFVPVLMKPFLVLALGIPVIMYLSY-------KDTVSKYK 96
Query: 177 SSIK--RAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPN 234
+ P L+ + + G+ ++ +R + E+ G + +E + +
Sbjct: 97 KRLMADNELPAILETFISGLSVGMPVENIMRYIVENKKGYMKEIIQE---ALHKADAGIP 153
Query: 235 RQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASL 294
++ E ++ + A + LI++ + + L L+ + +R+ E KA+ L
Sbjct: 154 LSLSLEEAAEKSLNKYFQRAVKILIKTSETSQGLAEQLDELLRDIEEDRINEKTAKASVL 213
Query: 295 GPKLTVPMIIFFLPVLILVIIGPAILSIIDTMKDH 329
+ +P++I F LI+ +I P I+S + H
Sbjct: 214 DNVIAIPVLIGFFIPLIVFVIFPFIVSFSNIFGTH 248
>gi|209515955|ref|ZP_03264816.1| type II secretion system protein [Burkholderia sp. H160]
gi|209503613|gb|EEA03608.1| type II secretion system protein [Burkholderia sp. H160]
Length = 325
Score = 71.4 bits (174), Expect = 2e-10, Method: Composition-based stats.
Identities = 42/288 (14%), Positives = 99/288 (34%), Gaps = 18/288 (6%)
Query: 30 AVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNL 89
+ + +G L ++ + R R Q+ + +R R+ + ++ ++
Sbjct: 10 GAFLAIVLTGMLVSSLRDLVRNRPRRRIQERMKELQKVRVARQRSAAADTIGALFER--P 67
Query: 90 KAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLR 149
K + + +++ +RLV I G + F +L P
Sbjct: 68 KDYGAFQRWFQQHVQ----RIRAVSGGGGIRLVCASG--IAGAVIAFIVVRLAPLPGWSH 121
Query: 150 VGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAE 209
+ + A L+ + ++ +PD LDL++ V +GI + QA+ +
Sbjct: 122 LLIYCGLPLA---ATRFTYRFLIARFRAQFLLVFPDTLDLIIRAVRAGIPVVQAISTAGK 178
Query: 210 DIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIG 269
+ P+ L + + + R Q+ L+ G ++G
Sbjct: 179 EAEE---PVRSTFRTMGDSLRLGADLKEVLDKAVARLQIADFSFFAVCLLLQRETGGNLG 235
Query: 270 DSLRVLVSETRSERLMEAEKKA----ASLGPKLTVPMIIFFLPVLILV 313
++L L R+ R + + +A + K+ + + L ++
Sbjct: 236 ETLENLSGIIRTRRDIRLKTRALTAEGRIASKIISAVPFAIMGFLYVI 283
>gi|229588192|ref|YP_002870311.1| hypothetical protein PFLU0644 [Pseudomonas fluorescens SBW25]
gi|229360058|emb|CAY46912.1| putative membrane protein [Pseudomonas fluorescens SBW25]
Length = 294
Score = 71.4 bits (174), Expect = 2e-10, Method: Composition-based stats.
Identities = 40/197 (20%), Positives = 76/197 (38%), Gaps = 10/197 (5%)
Query: 131 GIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLL 190
W+ G L + A+I+ + V+I+ Q+R + P LD
Sbjct: 75 ASAWVIGALLGWLLADGLGLIAMIVGPPLAL---RVFIAWRYQQRVQRMVEQLPQLLDHS 131
Query: 191 LICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDC 250
+ ++SG ++ A+ E I PL + M + + + +F + D
Sbjct: 132 VRSLKSGRTLADAVLGGVESIEN---PLRDAMGRVQRNVRMGVSLPDSVSDFAEFYEQDE 188
Query: 251 VRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVL 310
R L + RYG + + L L+ R + KA + ++T ++ LPVL
Sbjct: 189 FRLFALGLKVNHRYGGNASELLENLIKMIREREQGARQLKAMTGETRMTA-YVLGGLPVL 247
Query: 311 IL---VIIGPAILSIID 324
I+ +++ P L +
Sbjct: 248 IVGYFLVVNPGYLMNMW 264
>gi|257790637|ref|YP_003181243.1| type II secretion system protein [Eggerthella lenta DSM 2243]
gi|257474534|gb|ACV54854.1| type II secretion system protein [Eggerthella lenta DSM 2243]
Length = 296
Score = 71.4 bits (174), Expect = 2e-10, Method: Composition-based stats.
Identities = 30/193 (15%), Positives = 72/193 (37%), Gaps = 13/193 (6%)
Query: 125 IIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWP 184
I++ + L P L + V G+ +++ + +
Sbjct: 73 IVWAATATLPALTALALGVGPLSLLLLPVCAAGF------PLYLKVRRDSGKKKFEEQLG 126
Query: 185 DALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYN 244
A+ L+ + +G S+ QA+ VAE++ P+ E +++ A + +
Sbjct: 127 QAMPLIASNLRAGSSVAQAIGPVAENMSD---PIKSEFRRLTSDIRAGTPVPEALDKVAD 183
Query: 245 RTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETR----SERLMEAEKKAASLGPKLTV 300
RT +R A+ S + G S+ D + R + + + ++ + ++ V
Sbjct: 184 RTGSRDLRLFATAVDISQQTGGSLADITENVGQTVRARVEARKAIRSKTSLNRIESQIMV 243
Query: 301 PMIIFFLPVLILV 313
+ +F + L+ +
Sbjct: 244 GLPVFMMAALLAI 256
>gi|291526749|emb|CBK92335.1| Bacterial type II secretion system protein F domain [Eubacterium
rectale M104/1]
Length = 142
Score = 71.4 bits (174), Expect = 2e-10, Method: Composition-based stats.
Identities = 27/118 (22%), Positives = 52/118 (44%), Gaps = 8/118 (6%)
Query: 190 LLICVESGISIDQALRRVAEDIGGQSV-------PLSEEMLLTIAELSFLPNRQVAFENF 242
+ + + SG++++QA R+ + P EEML+T E+S + A+ F
Sbjct: 1 MAVLMGSGMTVEQAWNRITARYLDERKNNDKNIMPAYEEMLVTEREISDGVTGRKAYAGF 60
Query: 243 YNRTQMDCVRNATQALIQSDRYGT-SIGDSLRVLVSETRSERLMEAEKKAASLGPKLT 299
R ++ C + + ++QS G+ + + L + ER + A K G K+
Sbjct: 61 AERVKLPCYQKLVRIILQSIHKGSKGVCEMLEKESEDAFDERRLLALKLGEEAGTKML 118
>gi|303238718|ref|ZP_07325251.1| Type II secretion system F domain protein [Acetivibrio
cellulolyticus CD2]
gi|302593837|gb|EFL63552.1| Type II secretion system F domain protein [Acetivibrio
cellulolyticus CD2]
Length = 264
Score = 71.4 bits (174), Expect = 2e-10, Method: Composition-based stats.
Identities = 33/194 (17%), Positives = 82/194 (42%), Gaps = 16/194 (8%)
Query: 125 IIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWP 184
+ + +L + ++ L+ Y F +++ +V P + +++KR++ + +
Sbjct: 32 VGYTLLAAVAVY----LIAYIFYQNCIISLVVSFVALLYPKIRNKEIIEKRKNELNLQFR 87
Query: 185 DALDLLLICVESGISIDQALRRVAEDIGGQSVP----LSEEMLLTIAELSFLPNRQVAFE 240
D L L + +G SI+ + + V +D+ + +E+ + ++ + A E
Sbjct: 88 DMLYSLSSSLSAGKSIESSFKEVLKDLSIIYPDSNSFIIKEVEYIVRKIEMNETIESALE 147
Query: 241 NFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSE--------RLMEAEKKAA 292
+F R+ ++ + N L S R G +I D ++ + + L+ + K
Sbjct: 148 DFAARSHLEDIENFVDVLQTSKRTGGNIVDIIKNSSNIISDKIEVKEEIDTLLASRKFEQ 207
Query: 293 SLGPKLTVPMIIFF 306
+ + V +I+F
Sbjct: 208 KILALMPVMLILFL 221
>gi|291546645|emb|CBL19753.1| Bacterial type II secretion system protein F domain [Ruminococcus
sp. SR1/5]
Length = 151
Score = 71.4 bits (174), Expect = 2e-10, Method: Composition-based stats.
Identities = 25/124 (20%), Positives = 51/124 (41%), Gaps = 5/124 (4%)
Query: 179 IKRAWPDALDLLLICVESGISIDQALRRVAEDIG----GQSVPLSEEMLLTIAELSFLPN 234
+ +P + + V++G++ +A +++A D G G+ EE+ + E+ +
Sbjct: 1 MLMDYPGLIMKFTLLVQAGLTARKAFQKIALDYGKREDGKKREAYEEIRVACYEMDSGIS 60
Query: 235 RQVAFENFYNRTQMDCVRNATQALIQSDRYGTS-IGDSLRVLVSETRSERLMEAEKKAAS 293
A+ F R + + LIQ+ + G+ + D L E ER +A +
Sbjct: 61 EAEAYRRFGERCGQVKYKTLSTLLIQNLQKGSRYLADLLEKESVEAWEERKRKARVLGDT 120
Query: 294 LGPK 297
K
Sbjct: 121 AATK 124
>gi|76802194|ref|YP_327202.1| transmembrane protein (type II secretion system proteins TadC)
[Natronomonas pharaonis DSM 2160]
gi|76558059|emb|CAI49645.1| transmembrane protein (homolog 1 to type II secretion system
proteins TadC) [Natronomonas pharaonis DSM 2160]
Length = 672
Score = 71.4 bits (174), Expect = 2e-10, Method: Composition-based stats.
Identities = 31/163 (19%), Positives = 70/163 (42%), Gaps = 4/163 (2%)
Query: 153 VILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIG 212
+++ + + + + R +++A PD LD L E+GIS+ +L RV +
Sbjct: 431 ILIQAAIFLMGTFAVVYEVSKYRLRRLEQAVPDFLDRLASLNEAGISVVSSLDRVRD--- 487
Query: 213 GQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSL 272
L +E+ ++ + + + F +R + V + S R IG L
Sbjct: 488 SDVGALDDEVNRIWRDIEWGATVEQSLNRFESRVKTPSVTRVVTLITNSMRASNEIGPVL 547
Query: 273 RVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVII 315
R+ + RS+ + +++ L L V + F + +++++ +
Sbjct: 548 RIAAEQARSDLRLRRQRRQEML-TYLVVIYVSFLVFLIVILAL 589
Score = 61.4 bits (148), Expect = 2e-07, Method: Composition-based stats.
Identities = 38/199 (19%), Positives = 72/199 (36%), Gaps = 7/199 (3%)
Query: 135 IFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWI-SNLVQKRQSSIKRAWPDALDLLLIC 193
+FG D L G V + G A + S RQ I + P +
Sbjct: 109 VFGLDGTRLALLLLTSGLVGSLAAGGAYAARWRLPSIRADARQRQIDASLPRMVAFTYAL 168
Query: 194 VESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELS-FLPNRQVAFENFYNRTQMDCVR 252
G+S LR ++++ + E+ + + + F + A ++ +T +
Sbjct: 169 TRGGMSFPDVLRTLSQN-EDVFGEGAAEIGVVVRRMDLFNVDLVTAVQDISQQTPSEQFA 227
Query: 253 NATQALIQSDRYGTSIGDSLRVLVSETRSE----RLMEAEKKAASLGPKLTVPMIIFFLP 308
++ L+ + G ++ LR R E + E A + +TV +
Sbjct: 228 QFSENLVSVLQSGQNVSTFLREQYERYRDEAEEQQKEILELLATAAEVYVTVIVAGMLFL 287
Query: 309 VLILVIIGPAILSIIDTMK 327
V IL+IIG + + M+
Sbjct: 288 VTILLIIGLTVGETLFIMQ 306
>gi|257790323|ref|YP_003180929.1| type II secretion system protein [Eggerthella lenta DSM 2243]
gi|317489772|ref|ZP_07948271.1| hypothetical protein HMPREF1023_01970 [Eggerthella sp. 1_3_56FAA]
gi|325830267|ref|ZP_08163724.1| type II secretion system protein F domain protein [Eggerthella sp.
HGA1]
gi|257474220|gb|ACV54540.1| type II secretion system protein [Eggerthella lenta DSM 2243]
gi|316911118|gb|EFV32728.1| hypothetical protein HMPREF1023_01970 [Eggerthella sp. 1_3_56FAA]
gi|325487734|gb|EGC90172.1| type II secretion system protein F domain protein [Eggerthella sp.
HGA1]
Length = 306
Score = 71.4 bits (174), Expect = 2e-10, Method: Composition-based stats.
Identities = 32/132 (24%), Positives = 58/132 (43%), Gaps = 10/132 (7%)
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
AL + V S +++++ALR A + PL EE+ +A+ ++ +AFE R
Sbjct: 135 ALPQIAASVRSSLTLERALRTAASHVED---PLREELARVLADTAYGTTLAMAFERMARR 191
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVL----VSETRSERLMEAEKKAASLG---PKL 298
T VR+ A+ R+G ++ L ++ + R+ R ++ E L L
Sbjct: 192 TDSPDVRSLAAAVRIQQRFGGAVAPVLDLIAAHAAARLRTSRELKTELAGTRLAKWFVAL 251
Query: 299 TVPMIIFFLPVL 310
+P I F +
Sbjct: 252 AMPAIFFIMFAT 263
>gi|227872976|ref|ZP_03991275.1| conserved hypothetical protein [Oribacterium sinus F0268]
gi|227841192|gb|EEJ51523.1| conserved hypothetical protein [Oribacterium sinus F0268]
Length = 286
Score = 71.4 bits (174), Expect = 2e-10, Method: Composition-based stats.
Identities = 38/195 (19%), Positives = 63/195 (32%), Gaps = 10/195 (5%)
Query: 108 RSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVW 167
+EY N+ + L L G + D + I + VG
Sbjct: 79 YAEYYANVYYAMALSFFHFILCFGCLLAGWQDSRNFFYLG------IFLAIVGLIYGCDS 132
Query: 168 ISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIA 227
+ + KR + + P+ + + I V SG+ + A V G L M
Sbjct: 133 MRQKLVKRTENCETELPEVVSTMAILVNSGMILRDAWNMVGGRGEGDIYAL---MRDASE 189
Query: 228 ELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYG-TSIGDSLRVLVSETRSERLME 286
++ A F T + T AL+QS G + L S+ +E+
Sbjct: 190 DIRNGHADSEAIAKFGRATNSPEIIKFTSALMQSMGKGAGELPLFLARQSSDLWNEKKQR 249
Query: 287 AEKKAASLGPKLTVP 301
+K KL +P
Sbjct: 250 LLQKGEQASAKLLMP 264
>gi|197118216|ref|YP_002138643.1| Flp pilus assembly protein [Geobacter bemidjiensis Bem]
gi|197087576|gb|ACH38847.1| Flp pilus assembly protein, putative [Geobacter bemidjiensis Bem]
Length = 316
Score = 71.4 bits (174), Expect = 2e-10, Method: Composition-based stats.
Identities = 45/316 (14%), Positives = 108/316 (34%), Gaps = 33/316 (10%)
Query: 15 AVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRT 74
A + V++F + + L R + + R LRK + + + + S +
Sbjct: 3 ATLLLIFVAVFLGTFPLFS-------LFTRARHSYLLRHRLRKMEGGATRGTAESEHVLL 55
Query: 75 RDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIW 134
+ + + +L L A + L V + L G I
Sbjct: 56 PEPTTAERVLARLPLAAFFKRQ-----------------VALSGVNISTLGFLLFTGSIS 98
Query: 135 IFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICV 194
G+ L + + + + + F P +++ +KR+ PDA+ ++ +
Sbjct: 99 ALGFIVLFAWKENVFLALLAAMALGAF--PFAYLNYHRKKRRRLFAEQLPDAMVMMARSL 156
Query: 195 ESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNA 254
+G S+ A+ + ++ P+ L + + + R +
Sbjct: 157 RAGHSLAAAVELIGLEL---PEPIGGLFKLAYEQQKLGVRIADSLISLRERVESQDFNFF 213
Query: 255 TQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLI--- 311
+ G ++ + L L RS + + + + +++ ++ LPV++
Sbjct: 214 LTVTRINSESGGNLSEILDKLAETLRSRLQIRRQVEVITAEGRISG-YVLVALPVVMFAG 272
Query: 312 LVIIGPAILSIIDTMK 327
L ++ P L + T +
Sbjct: 273 LYLLRPGYLDVFFTQR 288
>gi|167748319|ref|ZP_02420446.1| hypothetical protein ANACAC_03063 [Anaerostipes caccae DSM 14662]
gi|167652311|gb|EDR96440.1| hypothetical protein ANACAC_03063 [Anaerostipes caccae DSM 14662]
Length = 445
Score = 71.4 bits (174), Expect = 2e-10, Method: Composition-based stats.
Identities = 30/145 (20%), Positives = 60/145 (41%), Gaps = 3/145 (2%)
Query: 180 KRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPL-SEEMLLTIAELSFLPNRQVA 238
+P + ++ + +G++I A+ + + +++ ++ A
Sbjct: 301 MEEYPMIISRFVLLLGAGMTIQGAVHSIGSSFDRDHPKFVYRQFQQADKKIALGMSQAQA 360
Query: 239 FENFYNRTQMDCVRNATQALIQSDRYGT-SIGDSLRVLVSETRSERLMEAEKKAASLGPK 297
+ Q+ C + + L QS GT + L +E SER A +K K
Sbjct: 361 LRELGSSIQLPCYKKLSVLLSQSLLRGTRDLLSRLEEEETEAFSERKETARRKGEEASTK 420
Query: 298 LTVPMIIFFLPVLILVIIGPAILSI 322
L +PMI+ L V++ +++ PA LS
Sbjct: 421 LLMPMIL-MLIVILTLLMVPAFLSF 444
>gi|284029667|ref|YP_003379598.1| type II secretion system protein [Kribbella flavida DSM 17836]
gi|283808960|gb|ADB30799.1| type II secretion system protein [Kribbella flavida DSM 17836]
Length = 286
Score = 71.1 bits (173), Expect = 2e-10, Method: Composition-based stats.
Identities = 35/191 (18%), Positives = 68/191 (35%), Gaps = 17/191 (8%)
Query: 99 VNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGY 158
+ L AG + + L+ + +L + + ++ G
Sbjct: 39 RDLLARAGVEG-VTPGAFIGACLITGFVAFVLMFL------------VSAALPVGVVFGL 85
Query: 159 VGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPL 218
+ P + + +KR + + WPD +D + V +G+S+ +AL +V E +PL
Sbjct: 86 MAGGVPVAVLKSRARKRLAEFRELWPDVVDNIASAVRAGLSLSEALAQVGER---GPLPL 142
Query: 219 SEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTS-IGDSLRVLVS 277
E A+ + + + R +AL + G +G LR L S
Sbjct: 143 REPFRRFGADYASTGRFAESLDRLKARLADPVGDRVVEALRIAREVGGGDLGRLLRSLSS 202
Query: 278 ETRSERLMEAE 288
R + +E
Sbjct: 203 FLRDDARTRSE 213
>gi|226325871|ref|ZP_03801389.1| hypothetical protein COPCOM_03684 [Coprococcus comes ATCC 27758]
gi|225205995|gb|EEG88349.1| hypothetical protein COPCOM_03684 [Coprococcus comes ATCC 27758]
Length = 281
Score = 71.1 bits (173), Expect = 2e-10, Method: Composition-based stats.
Identities = 26/136 (19%), Positives = 52/136 (38%), Gaps = 7/136 (5%)
Query: 169 SNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIG------GQSVPLSEEM 222
+N + R+ + +P+ + + +G++ +R+AED G G+ EE+
Sbjct: 120 NNQKKTRKEQMMLDYPEIITEFTMLTGAGMTAKNVWKRIAEDYGITRGKTGRKREAYEEI 179
Query: 223 LLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGT-SIGDSLRVLVSETRS 281
T E+ +E F R + L Q+ + G I + LR+ +
Sbjct: 180 WKTWQEMKSGIPEMECYERFARRCDLIPYMKMGALLSQNLKKGAKGISEMLRMEAVQALE 239
Query: 282 ERLMEAEKKAASLGPK 297
+R A + G +
Sbjct: 240 DRKSRARQLGEEAGTR 255
>gi|294139874|ref|YP_003555852.1| Flp pilus assembly protein TadB [Shewanella violacea DSS12]
gi|293326343|dbj|BAJ01074.1| Flp pilus assembly protein TadB, putative [Shewanella violacea
DSS12]
Length = 311
Score = 71.1 bits (173), Expect = 2e-10, Method: Composition-based stats.
Identities = 43/197 (21%), Positives = 80/197 (40%), Gaps = 10/197 (5%)
Query: 120 RLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSI 179
+ ++ + + I F L Y V V +G++GF W+ +Q
Sbjct: 83 KSLLYMGLMASAITSWFMSGFLPTYVRLTLVLLVPTMGFLGFF----WLMRSMQ--MKQF 136
Query: 180 KRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAF 239
A+P L + V +GIS+ QA+ +V+E G L E L L+ + +
Sbjct: 137 DHAFPQVLGQISRAVAAGISVPQAIAQVSEYQQGF---LGREFELIRDRLAIGISLKQTL 193
Query: 240 ENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLT 299
E R T ALI + G + + L L ++ + K+ + P++T
Sbjct: 194 EQACYRLPYASFHFFTVALILNQENGGQLREVLHSLGRTLHDNGAIKMKIKSLTAEPRMT 253
Query: 300 VPMIIFFLPVLILVIIG 316
+I+ LP++++ I+
Sbjct: 254 A-LILASLPLILISIMF 269
>gi|291521740|emb|CBK80033.1| Bacterial type II secretion system protein F domain [Coprococcus
catus GD/7]
Length = 491
Score = 71.1 bits (173), Expect = 2e-10, Method: Composition-based stats.
Identities = 39/210 (18%), Positives = 94/210 (44%), Gaps = 10/210 (4%)
Query: 120 RLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSI 179
+L + + + G + Y K + L + + L G + + + +++R +
Sbjct: 285 KLTLHLPDSVGGRAVEWKYQKQSQAGTILFIVFLFLAGCIWYQ--DNNLKKRLEERNEQL 342
Query: 180 KRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSV------PLSEEMLLTIAELSFLP 233
A+P + +++ + +G+++ ++ R+ +D L EM T ++
Sbjct: 343 LYAYPGFVHRMILMLGAGMTVRRSWNRLLDDNERLDSGHLEEDWLYREMKYTRIQMESGV 402
Query: 234 NRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVL-VSETRSERLMEAEKKAA 292
A+ F R ++ + +Q LIQ + G+ +L +E +R A++
Sbjct: 403 PEIQAYLEFGQRMELQQYKKFSQLLIQYIKRGSKGMQALMQQEAAEAEKQRRDLAKQLGE 462
Query: 293 SLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
+ G KL +PM++ + +++L+++ PA LS+
Sbjct: 463 TAGTKLLMPMMLLLI-IVLLIVMVPAFLSM 491
>gi|329928965|ref|ZP_08282775.1| type II secretion system protein F domain protein [Paenibacillus
sp. HGF5]
gi|328937217|gb|EGG33644.1| type II secretion system protein F domain protein [Paenibacillus
sp. HGF5]
Length = 285
Score = 71.1 bits (173), Expect = 2e-10, Method: Composition-based stats.
Identities = 28/154 (18%), Positives = 60/154 (38%), Gaps = 4/154 (2%)
Query: 130 LGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDL 189
+I + Y F + +L G G P +W ++++R+ ++ + AL
Sbjct: 55 ACVILGGLLFCFIGYLFYHNLILSLLPGAGGLMIPKLWRQFMLERRRKTLNLHFKQALYS 114
Query: 190 LLICVESGISIDQALRRVAEDIGGQSV----PLSEEMLLTIAELSFLPNRQVAFENFYNR 245
L + +G S++ R +D+ L E+ + ++ L + + A ++F R
Sbjct: 115 LSSSLSAGRSVENGFRDAVQDLLLLDPGGSSDLIFELKVIVSRLEYGEPIEAALQDFARR 174
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSET 279
M+ + N R G + + +R S
Sbjct: 175 AGMEDLTNFADVFSTCKRTGGDLVEVVRRTSSVI 208
>gi|238796993|ref|ZP_04640497.1| Type II secretion system protein F domain protein [Yersinia
mollaretii ATCC 43969]
gi|238719253|gb|EEQ11065.1| Type II secretion system protein F domain protein [Yersinia
mollaretii ATCC 43969]
Length = 279
Score = 71.1 bits (173), Expect = 2e-10, Method: Composition-based stats.
Identities = 34/203 (16%), Positives = 78/203 (38%), Gaps = 10/203 (4%)
Query: 125 IIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWP 184
++ +L I + + + + + IL + F + + + KR P
Sbjct: 55 MVIPVLYSIGAYSANIYWLHFNSIIILIFILTSIIFFQ-----LKISRKTHHTLFKRDLP 109
Query: 185 DALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYN 244
+ + ++ + SG SI+Q L R +I G PL +E+ L L+ + + F + Y
Sbjct: 110 EVILMINMAASSGASINQVLERCGNEISG---PLGDELDLICRRLNLGESPEAVFNDAYQ 166
Query: 245 RTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMII 304
R ++ + + G + + + L + E +K + +++V +I
Sbjct: 167 RFLYPEFYFLITIILLNLQQGGQLRELISRLSQVINKNKTSEQKKAVMTAQTRMSVNIIS 226
Query: 305 FF--LPVLILVIIGPAILSIIDT 325
+ +L + PA + +
Sbjct: 227 LMPLVFSTLLYFLDPATMESMWN 249
>gi|227871818|ref|ZP_03990220.1| conserved hypothetical protein [Oribacterium sinus F0268]
gi|227842319|gb|EEJ52547.1| conserved hypothetical protein [Oribacterium sinus F0268]
Length = 473
Score = 71.1 bits (173), Expect = 2e-10, Method: Composition-based stats.
Identities = 37/184 (20%), Positives = 81/184 (44%), Gaps = 12/184 (6%)
Query: 150 VGAVILIGYVGFCAPSVWI---SNLVQKRQSSIKRAWPDALDLLLICVESGISIDQAL-- 204
+ +L + F P + + R SS+ + + + L++ + +G++I +
Sbjct: 290 LLIPLLGLFACFLLPLQALEQQKTRQKTRLSSLTLDYAELVSKLVVYLGAGLAIRNSFSE 349
Query: 205 -----RRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALI 259
+ ++ +S PL EE+ + +L+ A+ NF R + +
Sbjct: 350 IAKHYNYLVKNCHQESHPLYEELNTLLNQLASNVGEGEAYLNFSKRIALKPYGKLISLIE 409
Query: 260 QSDRYGT-SIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPA 318
Q+ + G+ + L + + E S R A++ G KL +P+I+ V++L+I+ PA
Sbjct: 410 QNRKNGSKDLSRQLHMEMEEAFSVRKHMAKRLGEEAGTKLLLPLILQLF-VIMLMILYPA 468
Query: 319 ILSI 322
+ S+
Sbjct: 469 MQSL 472
>gi|160893700|ref|ZP_02074484.1| hypothetical protein CLOL250_01254 [Clostridium sp. L2-50]
gi|156864685|gb|EDO58116.1| hypothetical protein CLOL250_01254 [Clostridium sp. L2-50]
Length = 301
Score = 71.1 bits (173), Expect = 2e-10, Method: Composition-based stats.
Identities = 30/199 (15%), Positives = 78/199 (39%), Gaps = 9/199 (4%)
Query: 116 LLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKR 175
+ RL +P + + +I G ++ + + +++ G A V+ S ++KR
Sbjct: 59 YRIYRLSLPEV--AVCLILYLGLVGIISFLYYNSPLPILIAAPGGVAALRVFRSRCIEKR 116
Query: 176 QSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVP---LSEEMLLTIAELSFL 232
Q + + D + L + +G + + A E++ + +E+ I L
Sbjct: 117 QRQLYVEFKDMVQSLAASMGAGYAFENAFTAAYEEMRKLYGDSGLIVKELKWVIRGLRMH 176
Query: 233 PNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKK-- 290
+ + ++ R+ + + Q + + R G ++ ++ ++ + +E E +
Sbjct: 177 EDIEYLLQDMGERSGVREISEFAQVVGVAKRTGGNMVHIMKATAADISRKMEVELEIQTM 236
Query: 291 --AASLGPKLTVPMIIFFL 307
A K+ + + F L
Sbjct: 237 IAAKKYEQKIMLIVPFFIL 255
>gi|116671218|ref|YP_832151.1| type II secretion system protein [Arthrobacter sp. FB24]
gi|116611327|gb|ABK04051.1| type II secretion system protein [Arthrobacter sp. FB24]
Length = 284
Score = 71.1 bits (173), Expect = 2e-10, Method: Composition-based stats.
Identities = 37/214 (17%), Positives = 71/214 (33%), Gaps = 17/214 (7%)
Query: 79 SLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGY 138
+ + K + + LRAAG + V + L+ + + +
Sbjct: 17 WWSAWEQPQAAKRRPQSSRLQDLLRAAGIEN-------------VSGLGLVSTCVGVAAF 63
Query: 139 DKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGI 198
++ + G G P + +KR +++++ WPD +D L + +G+
Sbjct: 64 VSIVFFAVTRSWPISACFGLFGGWLPMAVVRWRARKRTATLRQLWPDVVDHLRSAIRAGL 123
Query: 199 SIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQAL 258
S+ +AL ++ E L A+ A R +AL
Sbjct: 124 SLPEALIQLGEK---GPEELRHVFRDFGADYRAGGQFDPALNRLKERLADPVADRIVEAL 180
Query: 259 IQSDRYGTS-IGDSLRVLVSETRSERLMEAEKKA 291
+ G S +G L L R +E +A
Sbjct: 181 RLTREVGGSDLGRLLGTLGEFLRESARTRSELEA 214
>gi|52425831|ref|YP_088968.1| MaoC protein [Mannheimia succiniciproducens MBEL55E]
gi|52307883|gb|AAU38383.1| MaoC protein [Mannheimia succiniciproducens MBEL55E]
Length = 293
Score = 71.1 bits (173), Expect = 2e-10, Method: Composition-based stats.
Identities = 38/189 (20%), Positives = 76/189 (40%), Gaps = 8/189 (4%)
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKR-QSSIKRAWPDA 186
++L +I F + L ++ + + V F + + L Q+R + + +P+
Sbjct: 69 VLLTLIIFFFFHTLNYLYIKVDKFIFLGVFLVLFF---IIVWKLGQRRNRKEFEEMFPEV 125
Query: 187 LDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRT 246
+ +L SG + QAL R +DI GQ + EE L+ + FE+ Y+R
Sbjct: 126 IQILNSATSSGAGLLQALERCGKDISGQ---IGEEFTAIHKRLAIGEDANSVFEDSYSRY 182
Query: 247 QMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFF 306
+ + G + + + L + ME +K A + +++ MI+
Sbjct: 183 PYKEYYFFITIIRVNLDKGGQMREVILRLGRVIADSKKMEKKKSAMTSEARMSA-MIVAS 241
Query: 307 LPVLILVII 315
PV + +
Sbjct: 242 FPVAFFIFM 250
>gi|218675030|ref|ZP_03524699.1| putative tadC pilus assembly protein [Rhizobium etli GR56]
Length = 76
Score = 71.1 bits (173), Expect = 2e-10, Method: Composition-based stats.
Identities = 21/67 (31%), Positives = 41/67 (61%)
Query: 260 QSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAI 319
QS+ GTS+ +LRV R R++ AE+KA +L K+ +P+ F PV +++++ P +
Sbjct: 3 QSEELGTSVTQTLRVYSKGMRDLRIVRAEEKANALPVKMLLPLGAFLFPVSLIIVLVPIV 62
Query: 320 LSIIDTM 326
+ ++ +
Sbjct: 63 IRVVSLL 69
>gi|317124420|ref|YP_004098532.1| type II secretion system F domain [Intrasporangium calvum DSM
43043]
gi|315588508|gb|ADU47805.1| Type II secretion system F domain [Intrasporangium calvum DSM
43043]
Length = 291
Score = 71.1 bits (173), Expect = 2e-10, Method: Composition-based stats.
Identities = 38/197 (19%), Positives = 75/197 (38%), Gaps = 17/197 (8%)
Query: 96 ENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVIL 155
E++ + LR AG+ + N+ ++G + +F LL V +
Sbjct: 41 EDLRDHLRQAGYPTVTPTNV-------------LVGSVVLFVLAFLLFMLLTAVVPIALC 87
Query: 156 IGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQS 215
G + +P I +KR+ ++ WPDA+D + V +G+++ +AL ++A +
Sbjct: 88 FGAIAAASPISLIRMRARKRRGKLRDLWPDAVDNITSGVRAGLALPEALAQLAVRGPEEL 147
Query: 216 VPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTS-IGDSLRV 274
P + + + ++L + G S +G LR
Sbjct: 148 RP---PFARFAEDYRATGRFHDCLDRLKDAMSDPVADRLIESLRIAREVGGSDLGRLLRT 204
Query: 275 LVSETRSERLMEAEKKA 291
L + R + AE +A
Sbjct: 205 LSAFLREDARTRAELEA 221
>gi|260892678|ref|YP_003238775.1| Type II secretion system F domain protein [Ammonifex degensii KC4]
gi|260864819|gb|ACX51925.1| Type II secretion system F domain protein [Ammonifex degensii KC4]
Length = 297
Score = 71.1 bits (173), Expect = 2e-10, Method: Composition-based stats.
Identities = 41/222 (18%), Positives = 79/222 (35%), Gaps = 15/222 (6%)
Query: 109 SEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWI 168
S S L + LVV F ++ L +P A +L PSV++
Sbjct: 87 SPLSAEALCALHLVVTAFFGSCALVSWLVGSGQLVFPTLALTLASLLA-------PSVFL 139
Query: 169 SNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAE 228
+ KR++ + R + + V +G++ AL+ A+ G PL E+ + E
Sbjct: 140 GHARAKRRARMARETLALAEFTAVGVAAGLTPWAALKEAAQ---GGDGPLYREVKRALEE 196
Query: 229 ---LSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGT-SIGDSLRVLVSETRSERL 284
+ R + + + + Q+ YG ++ V R R
Sbjct: 197 GEAQARSGPRTAVLGALAEELGVPEFSSFAELVCQAIEYGAEGFVSAIEDAVRHMREVRR 256
Query: 285 MEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
+ E A K+ VP+ + + ++ ++GP +
Sbjct: 257 AKLEAAAQKAQSKMLVPL-LVLVGAMMCFLLGPLFARVGAAF 297
>gi|260914308|ref|ZP_05920777.1| Flp pilus assembly protein TadB [Pasteurella dagmatis ATCC 43325]
gi|260631409|gb|EEX49591.1| Flp pilus assembly protein TadB [Pasteurella dagmatis ATCC 43325]
Length = 294
Score = 71.1 bits (173), Expect = 2e-10, Method: Composition-based stats.
Identities = 37/192 (19%), Positives = 76/192 (39%), Gaps = 13/192 (6%)
Query: 125 IIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRA-W 183
I FL+ I++ + +Q + ++L ++ + ++R + A +
Sbjct: 72 ISFLVFLILFYVNLFYIRLDRWQFILIFLVLFIFL--------VWKFGERRNHKMFNAMF 123
Query: 184 PDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFY 243
P+ + +L SG + QAL R +D+ GQ L +E L+ + FE+ Y
Sbjct: 124 PEVIQILTAAASSGAGLLQALERCGKDLTGQ---LGDEFKNIHKRLAIGEDPVTVFEDSY 180
Query: 244 NRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMI 303
+R + + G I + + L + ME +KKA + +++ MI
Sbjct: 181 SRYPYKEFYFFITIIRTNLSKGGQIREVISRLGRIIADAKKMEQKKKAMTSEARMSA-MI 239
Query: 304 IFFLPVLILVII 315
+ P+ +
Sbjct: 240 VASFPIAFFFFM 251
>gi|260778158|ref|ZP_05887051.1| flp pilus assembly protein TadB [Vibrio coralliilyticus ATCC
BAA-450]
gi|260606171|gb|EEX32456.1| flp pilus assembly protein TadB [Vibrio coralliilyticus ATCC
BAA-450]
Length = 301
Score = 71.1 bits (173), Expect = 2e-10, Method: Composition-based stats.
Identities = 35/180 (19%), Positives = 68/180 (37%), Gaps = 6/180 (3%)
Query: 137 GYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVES 196
G L+ AV+L+ + + +K+ L L+ V +
Sbjct: 84 GTIFWLQALAWYWQTAVVLVCFGVLFCALFVVRR--KKQIEEFDTNIVQVLGLVSRAVSA 141
Query: 197 GISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQ 256
G+S+ QA+ +VA G L E L L+ + + + R R +
Sbjct: 142 GLSVPQAIEQVANSQTGL---LGREFALITDNLALGISLRQTLDEACTRLPYRTFRYFSV 198
Query: 257 ALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIG 316
ALI + G + + L L R M + K+ + P++T + LP++++ ++
Sbjct: 199 ALILNQSNGGQLREILHNLSRTMHDNRAMLKKVKSMTAEPRMTAK-FLSLLPLILVAVVA 257
>gi|317472141|ref|ZP_07931473.1| type II secretion system protein [Anaerostipes sp. 3_2_56FAA]
gi|316900545|gb|EFV22527.1| type II secretion system protein [Anaerostipes sp. 3_2_56FAA]
Length = 374
Score = 71.1 bits (173), Expect = 3e-10, Method: Composition-based stats.
Identities = 30/145 (20%), Positives = 60/145 (41%), Gaps = 3/145 (2%)
Query: 180 KRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPL-SEEMLLTIAELSFLPNRQVA 238
+P + ++ + +G++I A+ + + +++ ++ A
Sbjct: 230 MEEYPIIISRFVLLLGAGMTIQGAVHSIGSSFDRDHPKFVYRQFQQADKKIALGMSQAQA 289
Query: 239 FENFYNRTQMDCVRNATQALIQSDRYGT-SIGDSLRVLVSETRSERLMEAEKKAASLGPK 297
+ Q+ C + + L QS GT + L +E SER A +K K
Sbjct: 290 LRELGSSIQLPCYKKLSVLLSQSLLRGTRDLLSRLEEEETEAFSERKETARRKGEEASTK 349
Query: 298 LTVPMIIFFLPVLILVIIGPAILSI 322
L +PMI+ L V++ +++ PA LS
Sbjct: 350 LLMPMIL-MLIVILTLLMVPAFLSF 373
>gi|288559781|ref|YP_003423267.1| type II secretion system protein F GspF1 [Methanobrevibacter
ruminantium M1]
gi|288542491|gb|ADC46375.1| type II secretion system protein F GspF1 [Methanobrevibacter
ruminantium M1]
Length = 201
Score = 70.7 bits (172), Expect = 3e-10, Method: Composition-based stats.
Identities = 31/165 (18%), Positives = 64/165 (38%), Gaps = 7/165 (4%)
Query: 151 GAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAED 210
IL P + + SSI + P AL L + +G S+ AL + +
Sbjct: 1 MFFILFALFILYLPKI----RHENDYSSISKELPYALRQLSTELRAGKSLFDALDSIVD- 55
Query: 211 IGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGD 270
LS E + E+ + + AF N R + ++ S R G+++
Sbjct: 56 --SDYGVLSREFSRVLEEIKYGETSENAFLNLEKRVNSKALSRVIYEILASLRIGSNLSH 113
Query: 271 SLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVII 315
SL ++ + + M+ ++ + L + + + L +I++ +
Sbjct: 114 SLNIIAEDVNFDMRMKLKEYSEKLNAFIMIYTFLAILAPVIILTM 158
>gi|123443824|ref|YP_001007795.1| putative tight adherance operon protein [Yersinia enterocolitica
subsp. enterocolitica 8081]
gi|122090785|emb|CAL13667.1| putative tight adherance operon protein [Yersinia enterocolitica
subsp. enterocolitica 8081]
Length = 280
Score = 70.7 bits (172), Expect = 3e-10, Method: Composition-based stats.
Identities = 34/191 (17%), Positives = 78/191 (40%), Gaps = 9/191 (4%)
Query: 125 IIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWP 184
I+ I+ I+ + L + + I++ + F + ++ K+ +P
Sbjct: 56 ILMPIVYSASIYLVNYFLFHFNNVIALLFIMVSVICFQ-----LRLSRKRYHRFFKQNFP 110
Query: 185 DALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYN 244
++L ++ + SG SI+Q L R ++I G PL E L L+ + + F + Y
Sbjct: 111 ESLLMINMAASSGASINQILERCGQEISG---PLGIEFNLVCRRLNVGESPESVFYDSYQ 167
Query: 245 RTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMII 304
R + ++ + + G + + L + E +K + +++V II
Sbjct: 168 RFKYPEFYFLITIILLNLQQGGQLRELTSRLSEVVNKNKATEQKKAVMTAQIRMSV-NII 226
Query: 305 FFLPVLILVII 315
+P+ +++
Sbjct: 227 SIMPIAFSLLL 237
>gi|327400021|ref|YP_004340860.1| Type II secretion system F domain-containing protein [Archaeoglobus
veneficus SNP6]
gi|327315529|gb|AEA46145.1| Type II secretion system F domain protein [Archaeoglobus veneficus
SNP6]
Length = 627
Score = 70.7 bits (172), Expect = 3e-10, Method: Composition-based stats.
Identities = 37/230 (16%), Positives = 81/230 (35%), Gaps = 13/230 (5%)
Query: 107 FRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVG---------AVILIG 157
+ S L V R + +I + I+ Y P + + +
Sbjct: 334 YPSPLKRYYLRVSRAIKMLIGDLGIFIYRPEYSFYFTLPIFGLMLPFIYTWEPETIFVTF 393
Query: 158 YVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVP 217
+ P + + +R I+ PD L L ESG++I A+R ++
Sbjct: 394 LLVTVTPYAILVEIRNRRVRKIEEHIPDFLKQLASLNESGLNIVSAIRILST---SNLGV 450
Query: 218 LSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVS 277
L+ E++ +L + A + F R V T L+++ +I D+L +
Sbjct: 451 LTSEIIKIRKDLEWGMLLSDALKRFERRIGSMTVTKVTSILLRAMEAAGTIKDALFTAAT 510
Query: 278 ETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
+ + ++ + + + V + F + + + ++ + I M
Sbjct: 511 DAQLYLELKKRVR-NEMFVYIVVIYMTFGVFLFTIFVLSNNFMQIFSKMS 559
Score = 40.2 bits (93), Expect = 0.40, Method: Composition-based stats.
Identities = 29/230 (12%), Positives = 75/230 (32%), Gaps = 21/230 (9%)
Query: 109 SEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWI 168
+ + +L + + ++ L I Y+ P ++
Sbjct: 62 ATFYPLLLAPFYFAMGYAIGVPISLYFGFEGLNWIIAALLTAVLTIATRYLILVYPKLY- 120
Query: 169 SNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAE 228
R+ I+ +P ++++L GIS+ + R +AE++ + + +E + +
Sbjct: 121 ---ASHRRKQIEVVFPHVVNMMLGMSRGGISVLEMCRVIAEEV-SVTGEVGKEFAVIVNG 176
Query: 229 LSFL-PNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLM-- 285
+ + A + + T + + + + L ER
Sbjct: 177 VEMFHKDLISAMKYVASTTPSQRFADFLDDFVSVIEGSGRLSEFLDFKSKHLMDEREKYQ 236
Query: 286 ---------EAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
AE A+L +IIF +++ ++G + ++ +
Sbjct: 237 DLFLNSLGILAEVYVAALVVAPLFMLIIF----VVMGMLGSTTMHLMQLL 282
>gi|302384577|ref|YP_003820399.1| Type II secretion system F domain protein [Clostridium
saccharolyticum WM1]
gi|302195205|gb|ADL02776.1| Type II secretion system F domain protein [Clostridium
saccharolyticum WM1]
Length = 245
Score = 70.7 bits (172), Expect = 3e-10, Method: Composition-based stats.
Identities = 34/193 (17%), Positives = 77/193 (39%), Gaps = 5/193 (2%)
Query: 136 FGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVE 195
+ Y F V + +L + F P + S L +KR + + + + LL +
Sbjct: 21 LAAAGIFSYVFYRSVASFLLFLPMIFIFPHIKKSELKKKRLQQLNLEFKEGILLLASFLS 80
Query: 196 SGISIDQALRRVAEDI---GGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVR 252
+G S++ A +++ G+ +S E ++++ + + A F R+ +D V+
Sbjct: 81 AGYSVENAFSASVKELVILYGEEGMVSMEFGHIVSQIRINRSVEQALSEFAGRSGLDDVK 140
Query: 253 NATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKL--TVPMIIFFLPVL 310
N + + R G + + + R + + E + + + +I F VL
Sbjct: 141 NFAEVFAAAKRSGGELVSIISHTAAVIRDKMQVRQEILTMTASKQFEQKIMTMIPFFIVL 200
Query: 311 ILVIIGPAILSII 323
+ + P +I+
Sbjct: 201 YIDMTSPGFFNIM 213
>gi|242399928|ref|YP_002995353.1| Bacterial type II secretion system protein F domain, putative
[Thermococcus sibiricus MM 739]
gi|242266322|gb|ACS91004.1| Bacterial type II secretion system protein F domain, putative
[Thermococcus sibiricus MM 739]
Length = 308
Score = 70.7 bits (172), Expect = 3e-10, Method: Composition-based stats.
Identities = 38/229 (16%), Positives = 95/229 (41%), Gaps = 12/229 (5%)
Query: 99 VNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGY 158
+ K+ + Y+L + + + FL++ ++ ++ +++ A+ +
Sbjct: 14 LEKIIPKRWTRRYNLFLYSAGISFLAVEFLLVSMLLGILTAIVVFLIPSVKLYALPVFFI 73
Query: 159 VGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPL 218
V V+ + K+ ++ PDA + + +G+S +AL + + L
Sbjct: 74 VFLGIAWVYPYWKLAKKIEDMENNIPDAFFYIASSLRAGVSFSEALEEAST---ARFGAL 130
Query: 219 SEEMLLTIAELSFLPNRQVAFENFYNRT-QMDCVRNATQALIQSDRYGTSIGDSLRVLVS 277
++E T++E+ + A + F R + + +T ++++ G + D L + +
Sbjct: 131 TDEFKRTVSEIKRGRSTYEALKAFALRNRRSIIIYRSTMIILEAYERGAPMADVLVAVAN 190
Query: 278 ETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
+ R ++ E+KA + + F + +GPAIL I+ +
Sbjct: 191 DVREILRIKKERKA---STGMQA--MFFIIASGF---LGPAILGIVSQL 231
>gi|257784835|ref|YP_003180052.1| type II secretion system protein [Atopobium parvulum DSM 20469]
gi|257473342|gb|ACV51461.1| type II secretion system protein [Atopobium parvulum DSM 20469]
Length = 272
Score = 70.7 bits (172), Expect = 3e-10, Method: Composition-based stats.
Identities = 28/189 (14%), Positives = 68/189 (35%), Gaps = 10/189 (5%)
Query: 107 FRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSV 166
+ L + + + ++ + +I G + + +L G
Sbjct: 24 YYVSMQLRNRFLYKYGITLVDDAFVLFFISGIAASILFGILFESVIGVLCGLFSLFLVPY 83
Query: 167 WISNLVQKRQS-SIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLT 225
++ + + + I P + + + SG+++ Q++ V++ G +SE +
Sbjct: 84 FLYEHAKHQSALEIAHMMPSIFRTIAVALGSGLTLSQSIEYVSKHTEG---VVSESFCIA 140
Query: 226 IAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLM 285
++ + A E+ R V AL+ S R G+ + + L+ L+
Sbjct: 141 DMQIKCGFPIEEAIEDLAERLDAPGVNLLASALVISHRTGSPLKNLLQKTAE------LV 194
Query: 286 EAEKKAASL 294
E ++K L
Sbjct: 195 ELQEKNQRL 203
>gi|253701803|ref|YP_003022992.1| type II secretion system protein [Geobacter sp. M21]
gi|251776653|gb|ACT19234.1| type II secretion system protein [Geobacter sp. M21]
Length = 320
Score = 70.3 bits (171), Expect = 4e-10, Method: Composition-based stats.
Identities = 40/305 (13%), Positives = 101/305 (33%), Gaps = 38/305 (12%)
Query: 16 VAITTAVSIFSLIYAVVIPSL-----GSGELEKRMKSVAVERE-ILRKQQITSLQKDSAS 69
+ T ++ F + A + G L++R++++A ER+ + ++ ++ + +++
Sbjct: 5 IVALTFLAAFGVFLAAFLHLAQRQASGRTVLKRRLQTMAGERQGEIPEELLSVISREAER 64
Query: 70 SRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLI 129
+ + +R + +L AG + +P+ L+
Sbjct: 65 ASELLTRAPQMR---------------TLGKRLEQAGIQ--------------LPVPLLL 95
Query: 130 LGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDL 189
+ LL +L G V + + ++R + +PDAL +
Sbjct: 96 GSTMAAALGLALLLGLKTQSPLIGLLAGVVVLLVAELMLRVKTERRTTRFTEQFPDALSI 155
Query: 190 LLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMD 249
+ +G S A++ V ++ PL + A R
Sbjct: 156 AARSLRAGHSFPTAIQLVGQEAPSPVGPL---FRTAYEQQQLGLRMVDALMRMNERIDSL 212
Query: 250 CVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPV 309
+R T + + G ++ + L L R + + + + +L+ ++
Sbjct: 213 DLRFFTTLVAINSDIGGNLSELLDKLAMTIRERLKIRRQVQVYTAQGRLSGYVLAALPIA 272
Query: 310 LILVI 314
+
Sbjct: 273 TFGIF 277
>gi|332284567|ref|YP_004416478.1| type II secretion system protein [Pusillimonas sp. T7-7]
gi|330428520|gb|AEC19854.1| type II secretion system protein [Pusillimonas sp. T7-7]
Length = 282
Score = 70.3 bits (171), Expect = 4e-10, Method: Composition-based stats.
Identities = 40/222 (18%), Positives = 81/222 (36%), Gaps = 8/222 (3%)
Query: 98 IVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGA----- 152
+ L A R + + RL +F+ +W+ + + V A
Sbjct: 21 LQKWLGKAYVRYQQAFKKQASERLDEFFLFVDPAQLWLANIALCMVLMAVVYVLAGSGVL 80
Query: 153 VILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIG 212
+ G G P I + + R PD L L + +G + AL+ +
Sbjct: 81 LAFSGVTGLLVPQYVIGRIRKLRLQRFDEQLPDLLQALAGALRAGAGLQSALKHIV---A 137
Query: 213 GQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSL 272
PLS+E L + + + A + Y R + AL + + G ++ ++L
Sbjct: 138 QSPAPLSQEFGLMLRQQRMGIGFEQALADLYRRMPFEGTGLVVSALTIAAQSGGNLAETL 197
Query: 273 RVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVI 314
+ + R+ + + +A + +L ++ PVL +V+
Sbjct: 198 ESIAATLRARLRLLSRVQALTSQGRLQAWIMAGLPPVLAIVL 239
>gi|266621095|ref|ZP_06114030.1| conserved hypothetical protein [Clostridium hathewayi DSM 13479]
gi|288867251|gb|EFC99549.1| conserved hypothetical protein [Clostridium hathewayi DSM 13479]
Length = 411
Score = 70.3 bits (171), Expect = 4e-10, Method: Composition-based stats.
Identities = 33/182 (18%), Positives = 73/182 (40%), Gaps = 23/182 (12%)
Query: 155 LIGYVGFCAPSVWISNLV-------QKRQSSIKRAWPDALDLLLICVESGISIDQALRRV 207
+I +G +W + + ++R+ + + + + ++ + +G++I A R+
Sbjct: 229 VIPVLGLLLAFLWAARVKMNEQNVKKQREQLLLLDYSEIVSKFMVFISAGMTIRTAWERI 288
Query: 208 A-------EDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQ 260
A + ++ P EEM TI++L A+ F R + L Q
Sbjct: 289 AAGYEKTVQTGNRKARPAYEEMCHTISQLKSGMAEGRAYGEFGRRCGLQPYVKLAALLEQ 348
Query: 261 SDRYGT-SIGDSLRVLVSETRSERLMEAEKKAASLGPKLT--------VPMIIFFLPVLI 311
+ + G+ ++ +L + + +R A+K G KL V MI+ +P +
Sbjct: 349 NRKTGSKNLKSALELEMVSAFEQRKNLAKKLGEEAGTKLLLPLFLMLGVVMIMIVVPAFL 408
Query: 312 LV 313
+
Sbjct: 409 AI 410
>gi|288930650|ref|YP_003434710.1| type II secretion system F domain protein [Ferroglobus placidus DSM
10642]
gi|288892898|gb|ADC64435.1| Type II secretion system F domain protein [Ferroglobus placidus DSM
10642]
Length = 633
Score = 70.3 bits (171), Expect = 4e-10, Method: Composition-based stats.
Identities = 41/225 (18%), Positives = 88/225 (39%), Gaps = 18/225 (8%)
Query: 107 FRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAV------ILIGYVG 160
FR EY I L+ + I+ + IF L PF + + + +
Sbjct: 343 FRREYLNPIRLLKKYPEAILLFSVPAGMIFVVLGFLNNPFYPSIDWFFKFDDYLFVALII 402
Query: 161 FCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSE 220
+P + +++ ++ + P L+ L ESG+ I +A+ +A+ ++ L +
Sbjct: 403 MLSPYAVFYEIKKRQLNTALKLTPVFLNKLASANESGMPIHKAIAMIAK---TETSALKK 459
Query: 221 EMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETR 280
E+ +L + + + A F NR ++ + L+++ R ++ + LR+ +
Sbjct: 460 EIEKIKLDLDWKISLEDALIRFANRIRVFELTRTITLLVEALRSTGNVTEVLRISAKDAS 519
Query: 281 SERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDT 325
+ L+ E+ +I + I I+ II T
Sbjct: 520 NAELLRRERLGN------MFMYVIIIYISFFVFI---GIVYIIST 555
Score = 53.7 bits (128), Expect = 3e-05, Method: Composition-based stats.
Identities = 28/185 (15%), Positives = 61/185 (32%), Gaps = 2/185 (1%)
Query: 132 IIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLL 191
I+ + + + L + + ++G ++ ++ R+S I R P A+ +
Sbjct: 89 ILSYWLKYRKFFWASVLAALITLAMYFLGKFLFKIYPGFIISDRKSKINRLLPHAVMFMY 148
Query: 192 ICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFL-PNRQVAFENFYNRTQMDC 250
G+ I + +A +S+E + ++ L + + A T +
Sbjct: 149 SLSRGGMGIIDIFKSIAA-YEDVYSEVSKEFAKIVRDIEILSKDLRTALTEAIENTPSEN 207
Query: 251 VRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVL 310
+++ LI G + L E + L + F L
Sbjct: 208 LKDLLHGLITVIDSGGDVTSYLEERAEFYLERARQEQKSFLDFLSLMAESYITAFVAGPL 267
Query: 311 ILVII 315
L+II
Sbjct: 268 FLIII 272
>gi|90406746|ref|ZP_01214939.1| MaoC protein [Psychromonas sp. CNPT3]
gi|90312199|gb|EAS40291.1| MaoC protein [Psychromonas sp. CNPT3]
Length = 308
Score = 70.3 bits (171), Expect = 4e-10, Method: Composition-based stats.
Identities = 33/185 (17%), Positives = 71/185 (38%), Gaps = 10/185 (5%)
Query: 130 LGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDL 189
G+ W F + L V ++ + + + ++ + ++P ++
Sbjct: 90 CGVTWYFSASFNIYSRLLLLVVVPVIAFLISYW-------FIRAQQIKEFEHSFPQVIEQ 142
Query: 190 LLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMD 249
+ V +GIS+ QA+ +V E G L+ E L L + + A + R
Sbjct: 143 ISRAVAAGISVPQAIAQVPEYQQGL---LAHEFSLLRDRLEIGISLKQALQQSTYRLPYS 199
Query: 250 CVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPV 309
+ ALI + G + + L L + ++ + K+ + P++T ++
Sbjct: 200 GFHFFSVALILNQENGGQLREVLHSLSRTLHNNHAIKMKIKSLTAEPRMTALVLACLPLC 259
Query: 310 LILVI 314
LI V+
Sbjct: 260 LISVM 264
>gi|163840097|ref|YP_001624502.1| tyrosine phenol-lyase [Renibacterium salmoninarum ATCC 33209]
gi|162953573|gb|ABY23088.1| tyrosine phenol-lyase [Renibacterium salmoninarum ATCC 33209]
Length = 161
Score = 70.3 bits (171), Expect = 4e-10, Method: Composition-based stats.
Identities = 21/102 (20%), Positives = 40/102 (39%), Gaps = 3/102 (2%)
Query: 170 NLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAEL 229
+ +R++ + +P +L+ + V +G S AL RV G L++E + +
Sbjct: 1 MKITRREARMLAEFPSLAELMALAVRAGESATGALERVCRTSQG---DLAQEFARILGQT 57
Query: 230 SFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDS 271
A F RT++ + T L + GT +
Sbjct: 58 RSGVPLTEALAAFSRRTKIAPLVRFTDGLTVAVERGTPLAGV 99
>gi|284161834|ref|YP_003400457.1| type II secretion system protein [Archaeoglobus profundus DSM 5631]
gi|284011831|gb|ADB57784.1| type II secretion system protein [Archaeoglobus profundus DSM 5631]
Length = 617
Score = 69.9 bits (170), Expect = 5e-10, Method: Composition-based stats.
Identities = 33/199 (16%), Positives = 75/199 (37%), Gaps = 8/199 (4%)
Query: 116 LLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKR 175
V L +P+ ++ I + + + + + P V + + +
Sbjct: 348 YYVFVLSIPL-GILFAIYGLSVVGFYPSIGWFFSFDDYLFVSIILTLLPFVILHEIRVRS 406
Query: 176 QSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNR 235
R P + L ESG+ I +A+ +A+ + PL +E+ ++ + +
Sbjct: 407 VGRYLRYIPIFFNRLATINESGVPIYRAISILAK---TDTSPLRDEIRKIKTDIDWGLDL 463
Query: 236 QVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLG 295
AF F NR ++ V L ++ + ++ + L + E L++ E+
Sbjct: 464 SRAFVRFANRIRVFDVTRVVTMLNEAMKTTGNLTEVLVISAKEASRSELIKRERY----Y 519
Query: 296 PKLTVPMIIFFLPVLILVI 314
+T +II+ + + I
Sbjct: 520 SMMTYTIIIYVAFFVFIGI 538
>gi|291561781|emb|CBL40581.1| hypothetical protein CK3_08150 [butyrate-producing bacterium SS3/4]
Length = 408
Score = 69.9 bits (170), Expect = 5e-10, Method: Composition-based stats.
Identities = 34/181 (18%), Positives = 65/181 (35%), Gaps = 10/181 (5%)
Query: 149 RVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVA 208
+ I F ++ + + +P+ L ++ +G + QA ++
Sbjct: 231 LIFLGIAAALCLFLKEKSDAKEAKKQWEDRMILDYPELLSDFVVLTGAGYPVRQAWKKQV 290
Query: 209 EDIGGQSVPL----SEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRY 264
D ++ L EM + ++ A+ F R + C L S
Sbjct: 291 VDAESKNTVLIHPVYREMRTALNQMETGTPEIRAYGEFGRRIGLGCYIKFASLLGNSVST 350
Query: 265 GTSIGDSLRVLVSETRSERLMEAE---KKAASLGPKLTVPMIIFFLPVLILVIIGPAILS 321
G D R+L E + E +K KL +PM L V++++++ PA LS
Sbjct: 351 GGK--DLRRLLEEEMETAFRQRKELALRKGEEASTKLLIPM-FLMLGVVMVMVVAPAFLS 407
Query: 322 I 322
+
Sbjct: 408 L 408
>gi|307328261|ref|ZP_07607439.1| Type II secretion system F domain protein [Streptomyces
violaceusniger Tu 4113]
gi|306886095|gb|EFN17103.1| Type II secretion system F domain protein [Streptomyces
violaceusniger Tu 4113]
Length = 272
Score = 69.9 bits (170), Expect = 5e-10, Method: Composition-based stats.
Identities = 37/154 (24%), Positives = 67/154 (43%), Gaps = 6/154 (3%)
Query: 173 QKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFL 232
++ ++ R P A DLL C+ +G +A V +GG P+ E + T AEL
Sbjct: 120 RRLEALAARQIPLAADLLTACLAAGAGPRKAAEAVGGSLGG---PVGERLAQTAAELRLG 176
Query: 233 PNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAA 292
A+ + + +AL ++ G + + L +E R+E+ A K+A
Sbjct: 177 AEPAHAWGRIGA---LPGAQGLARALERAGTTGAPAVEPVSRLAAECRAEQGRAAMKRAD 233
Query: 293 SLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
G + P+ FLP +LV + P ++ + +
Sbjct: 234 RTGVLVNAPLAGCFLPAFLLVGLAPVMIGLARGL 267
>gi|331092046|ref|ZP_08340877.1| hypothetical protein HMPREF9477_01520 [Lachnospiraceae bacterium
2_1_46FAA]
gi|330402247|gb|EGG81818.1| hypothetical protein HMPREF9477_01520 [Lachnospiraceae bacterium
2_1_46FAA]
Length = 251
Score = 69.9 bits (170), Expect = 5e-10, Method: Composition-based stats.
Identities = 31/149 (20%), Positives = 62/149 (41%), Gaps = 3/149 (2%)
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
+L I+ G +L Y F + + F W ++R+ ++ + +AL
Sbjct: 20 LLVIVKGLGGVGILAYLFYHSWIGYAALLPLLFLYYRTWKKEYAKRRKEKFQKQFKEALQ 79
Query: 189 LLLICVESGISIDQALRRVAEDIG---GQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
L + G SI+ A+R V +++ G+ +++E + +L + A++ F +R
Sbjct: 80 SLRTVLNVGYSIENAIREVKKEMTTLYGEDALITKEFSYLVRQLEMNIPVEQAWKTFADR 139
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRV 274
+M V + L R G + LR
Sbjct: 140 VEMSEVTHFVTILSTIKRSGGDMIAVLRQ 168
>gi|302521639|ref|ZP_07273981.1| integral membrane protein [Streptomyces sp. SPB78]
gi|302430534|gb|EFL02350.1| integral membrane protein [Streptomyces sp. SPB78]
Length = 242
Score = 69.9 bits (170), Expect = 5e-10, Method: Composition-based stats.
Identities = 31/156 (19%), Positives = 57/156 (36%), Gaps = 7/156 (4%)
Query: 155 LIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQ 214
+ VG + +++ KR + PD LL +G+++ AL AE++
Sbjct: 43 IAALVGAWSAYAFLNWQRAKRIEAFISQLPDVARLLANATAAGLALRTALAMAAEELEN- 101
Query: 215 SVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRV 274
P EE+ +L+ + A + R + L+ S++ G ++ SLR
Sbjct: 102 --PAGEELSNVADQLALGRSIDEALDELSRRLPSRELVVLVTTLVLSNKAGGTVVGSLRN 159
Query: 275 LVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVL 310
L + E + T F +P L
Sbjct: 160 LTVTLEERKETRREVRTMLSEVNATA----FTVPAL 191
>gi|312882148|ref|ZP_07741897.1| Flp pilus assembly protein TadB [Vibrio caribbenthicus ATCC
BAA-2122]
gi|309370194|gb|EFP97697.1| Flp pilus assembly protein TadB [Vibrio caribbenthicus ATCC
BAA-2122]
Length = 300
Score = 69.9 bits (170), Expect = 5e-10, Method: Composition-based stats.
Identities = 34/190 (17%), Positives = 71/190 (37%), Gaps = 11/190 (5%)
Query: 126 IFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPD 185
+ L + W L+ L VG + + G+ +LV KR+ + +PD
Sbjct: 78 VVLSVAASWYIVITLLMIENKALVVGLSCVFIFAGY-------RSLVTKRRRDFENTFPD 130
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
AL++L+ V +G S+ QA+ V + + + E + V
Sbjct: 131 ALNILMSAVSAGDSLMQAIIYVGDVMDN---AIGREFKRMGDRFKLGESPDVILHRACKT 187
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
T + + G + L L+ R +E +K A + +++ ++
Sbjct: 188 YPYPEFLFFTVTIRANIARGGQLKGVLARLIRVLVESRTLEKKKMAMTSEARISAKIVAM 247
Query: 306 FLPVLILVII 315
PV+ ++++
Sbjct: 248 I-PVIFMLLL 256
>gi|302542848|ref|ZP_07295190.1| putative integral membrane protein [Streptomyces hygroscopicus ATCC
53653]
gi|302460466|gb|EFL23559.1| putative integral membrane protein [Streptomyces himastatinicus
ATCC 53653]
Length = 312
Score = 69.9 bits (170), Expect = 5e-10, Method: Composition-based stats.
Identities = 34/207 (16%), Positives = 71/207 (34%), Gaps = 7/207 (3%)
Query: 112 SLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSV----W 167
SL L +RL + + G +++ G + +
Sbjct: 66 SLGRRLELRLAATGLDITPGEFFVYTAAAAAGLWAVAASLLASFFGPIAAVIAVWSAFGY 125
Query: 168 ISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIA 227
++ QKR P+ +L ++G+++ AL A+++ P EE+ A
Sbjct: 126 LNWQRQKRIERFINQLPELSRILANATQAGLALRTALSMAADEMEA---PAGEELSKVSA 182
Query: 228 ELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEA 287
+L+ + A R + L+ S+R G ++ SLR L +
Sbjct: 183 KLAVGHSVDDALGELAERLPSRELVVLVTTLVLSNRAGGTVVSSLRNLTHTLEERKETRR 242
Query: 288 EKKAASLGPKLTVPMIIFFLPVLILVI 314
E + +T ++ +L++
Sbjct: 243 EVRTQLSQVTVTAYVVPLMGIGTLLLM 269
>gi|253580449|ref|ZP_04857714.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
gi|251848179|gb|EES76144.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
Length = 257
Score = 69.9 bits (170), Expect = 5e-10, Method: Composition-based stats.
Identities = 35/189 (18%), Positives = 85/189 (44%), Gaps = 7/189 (3%)
Query: 141 LLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISI 200
+ +Y F ++L+ V + ++++R+ ++ + DAL L + V++G S+
Sbjct: 38 MADYLFYKSKWVLLLMLPVPVFYLKWQKNRMIRERRKNLNYQFKDALTSLSVAVQAGYSV 97
Query: 201 DQALRRVAEDIG---GQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQA 257
+ A++ D+ G+ + EE ++ + F + R+Q++ + N
Sbjct: 98 ESAVKTCVRDLERLYGKGTDIVEEFRYIESQQHISVPLEELFLDLGERSQIEDIENFASV 157
Query: 258 LIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVII-- 315
+ R G + ++ + + ++ E +A +L K + MI+ +PV I++ +
Sbjct: 158 FYTAKRTGGDMNRVIQKVSRMLGDKIDVKKEIEA-TLAAKKSEQMIMSLMPVGIILYLQM 216
Query: 316 -GPAILSII 323
P LS++
Sbjct: 217 TSPGFLSVL 225
>gi|219853241|ref|YP_002467673.1| type II secretion system protein [Methanosphaerula palustris E1-9c]
gi|219547500|gb|ACL17950.1| type II secretion system protein [Methanosphaerula palustris E1-9c]
Length = 644
Score = 69.9 bits (170), Expect = 6e-10, Method: Composition-based stats.
Identities = 28/215 (13%), Positives = 85/215 (39%), Gaps = 6/215 (2%)
Query: 113 LNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLV 172
+ +L + + + II++++ ++ + G L Y + VI + + P
Sbjct: 365 PSRILYISVPIGIIYVLVHLLMVQGAPDLETYLDLVDDHIVIAVLII--LVPYSVFFEGW 422
Query: 173 QKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFL 232
++ I+ + P+ LD + + G+++ QA+ + L E+ ++ +
Sbjct: 423 NRKLGGIESSIPEFLDRMAGINQVGLTMAQAISIMVN---ANLGVLGYEIKRIKRDMEWG 479
Query: 233 PNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAA 292
N A F R + + ++ I + L + S+ R +++ +++
Sbjct: 480 ANFSEALMRFERRITTPIIARMVVLITKASEMSGQINEVLNIAASDARMSDVLK-KERLG 538
Query: 293 SLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
+ + + F + + ++ ++ L ++ ++
Sbjct: 539 EMFIYTAIVYLSFMVFIFVVGVLSSQFLPVLGGIQ 573
>gi|290558836|gb|EFD92228.1| hypothetical protein BJBARM5_1029 [Candidatus Parvarchaeum
acidophilus ARMAN-5]
Length = 233
Score = 69.5 bits (169), Expect = 6e-10, Method: Composition-based stats.
Identities = 38/203 (18%), Positives = 80/203 (39%), Gaps = 12/203 (5%)
Query: 84 VKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLE 143
KKL + + L A +Y I + + + ++ L+ G+ + + +
Sbjct: 22 FKKLAFNFKGIVPTLKQDLIQASMSIDYLDYIAAGIVVALVLVGLMAGVSGLIILIAIKK 81
Query: 144 YPFQLRVGAVILIGYVGFCAPSVWI-------SNLVQKRQSSIKRAWPDALDLLLICVES 196
+++ A++ + F P+V+ KR I+ A+ ++I V S
Sbjct: 82 NLLTIKIEAIL--PVLIFVVPAVYFFYFLNFPKLQAVKRTKLIEEQVVFAIREIMIKVGS 139
Query: 197 GISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQ 256
G+ I AL VA G +S+E L + E+ + A ++ R +R A
Sbjct: 140 GVPIFNALLDVAN---GNYGIISDEFKLAVEEIESGVPQNDALDHLARRVPSQSLRRAID 196
Query: 257 ALIQSDRYGTSIGDSLRVLVSET 279
++ + + G+ I +L ++
Sbjct: 197 IILYAIKSGSDIAGTLELIHDML 219
>gi|119963307|ref|YP_949041.1| type II secretion system protein F [Arthrobacter aurescens TC1]
gi|119950166|gb|ABM09077.1| putative bacterial type II secretion system protein F domain
[Arthrobacter aurescens TC1]
Length = 305
Score = 69.5 bits (169), Expect = 6e-10, Method: Composition-based stats.
Identities = 37/146 (25%), Positives = 67/146 (45%), Gaps = 5/146 (3%)
Query: 180 KRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAF 239
R L+L+ +++G I +AL +A+ S P+ + + +A L+ + + A+
Sbjct: 164 LRDTAMMLELVASMLDAGAGIGRALELIAK---CASPPIRQSLRPVVAALAIGADWETAW 220
Query: 240 ENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLT 299
Q V AL + G L + R E+ AEK+AA+LG KL
Sbjct: 221 RTPTR--QPPEVVRLKDALAFAALTGAPSASILYAQAARERREQFRAAEKRAAALGVKLV 278
Query: 300 VPMIIFFLPVLILVIIGPAILSIIDT 325
VP+ + LP I + I P +++++ +
Sbjct: 279 VPLGLCSLPAFICLGIVPVLIAMLPS 304
>gi|239979682|ref|ZP_04702206.1| hypothetical protein SalbJ_09607 [Streptomyces albus J1074]
gi|291451547|ref|ZP_06590937.1| conserved hypothetical protein [Streptomyces albus J1074]
gi|291354496|gb|EFE81398.1| conserved hypothetical protein [Streptomyces albus J1074]
Length = 311
Score = 69.5 bits (169), Expect = 7e-10, Method: Composition-based stats.
Identities = 28/138 (20%), Positives = 52/138 (37%), Gaps = 3/138 (2%)
Query: 166 VWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLT 225
V+++ QKR + PD LL +G+++ AL AE++ P EE+
Sbjct: 123 VFLNWQRQKRIEAFINQLPDVARLLANATAAGLALRTALAMAAEELEA---PAGEELCRV 179
Query: 226 IAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLM 285
+L+ + A R + L+ S++ G ++ SLR L + +
Sbjct: 180 ADQLALGRSVDAALGELAERLPSRELVVLVTTLVLSNQAGGTVVSSLRNLTATLEERKET 239
Query: 286 EAEKKAASLGPKLTVPMI 303
E + T +
Sbjct: 240 RREVRTMLSEVHATALTV 257
>gi|303241928|ref|ZP_07328421.1| Flp pilus assembly protein TadB-like protein [Acetivibrio
cellulolyticus CD2]
gi|302590483|gb|EFL60238.1| Flp pilus assembly protein TadB-like protein [Acetivibrio
cellulolyticus CD2]
Length = 305
Score = 69.5 bits (169), Expect = 7e-10, Method: Composition-based stats.
Identities = 30/164 (18%), Positives = 66/164 (40%), Gaps = 17/164 (10%)
Query: 96 ENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVIL 155
E I N++ AG+ ++S I +V ++V ++ +G +++ + +
Sbjct: 54 EGIRNRIGMAGY--KFSPEIYIVFKVVSILLTFFIGQLFL------------KDIVFSLP 99
Query: 156 IGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQS 215
+ VGF P++ + + KR+ + + LD + +G ++ AL E
Sbjct: 100 VAVVGFFIPNLLLKQRISKRKDLMTEQLIEWLDYMSSMGTAGKALLTALDYSIEKSRD-- 157
Query: 216 VPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALI 259
PL + A + + AFEN + + + + A+
Sbjct: 158 -PLKSVLEKVSANIKKSQSLSEAFENVTKQIPIPEFKMVSMAIS 200
>gi|125973853|ref|YP_001037763.1| Flp pilus assembly protein TadB-like protein [Clostridium
thermocellum ATCC 27405]
gi|256004307|ref|ZP_05429289.1| Flp pilus assembly protein TadB-like protein [Clostridium
thermocellum DSM 2360]
gi|281418015|ref|ZP_06249035.1| Type II secretion system F domain protein [Clostridium thermocellum
JW20]
gi|125714078|gb|ABN52570.1| Flp pilus assembly protein TadB-like protein [Clostridium
thermocellum ATCC 27405]
gi|255991741|gb|EEU01841.1| Flp pilus assembly protein TadB-like protein [Clostridium
thermocellum DSM 2360]
gi|281409417|gb|EFB39675.1| Type II secretion system F domain protein [Clostridium thermocellum
JW20]
gi|316939949|gb|ADU73983.1| Type II secretion system F domain [Clostridium thermocellum DSM
1313]
Length = 268
Score = 69.5 bits (169), Expect = 7e-10, Method: Composition-based stats.
Identities = 30/203 (14%), Positives = 83/203 (40%), Gaps = 11/203 (5%)
Query: 117 LVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQ 176
+ + V + L +++ GY F + +++ + P ++++KR+
Sbjct: 30 MSAKEKVFYVLLAASVLFAIGY------IFYHHIIGALILTPLALLYPKRKTKDIIEKRK 83
Query: 177 SSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVP----LSEEMLLTIAELSFL 232
S + + D L + + +G S++ A + D+ + E+ + L
Sbjct: 84 SELNLQFKDLLYSISASLTAGKSVETAFKEALNDLCILYPDPDTYIIREVEYIVRRLEMN 143
Query: 233 PNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAA 292
+ A E+ R+ ++ ++N T R G ++ + +R + ++++ E+
Sbjct: 144 ETIEDALEDLAKRSHLEDIQNFTDVFKTCKRTGGNLVNVIRN-STNIINDKIEIKEEINT 202
Query: 293 SLGPKLTVPMIIFFLPVLILVII 315
L K ++ +P ++++I+
Sbjct: 203 LLAAKKFEQKVLSVMPFIMILIL 225
>gi|154151893|ref|YP_001405511.1| type II secretion system protein [Candidatus Methanoregula boonei
6A8]
gi|154000445|gb|ABS56868.1| type II secretion system protein [Methanoregula boonei 6A8]
Length = 652
Score = 69.5 bits (169), Expect = 7e-10, Method: Composition-based stats.
Identities = 29/176 (16%), Positives = 63/176 (35%), Gaps = 3/176 (1%)
Query: 117 LVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQ 176
+ + VPI L + ++ + F + A ++I + P + +
Sbjct: 365 HTLYITVPIAILYIVLVLLNIPYYADPEIFMEVMNAHLVIALLIVLIPYAIFYEIWSHKV 424
Query: 177 SSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQ 236
I+ PD L+ + G++I QA+ + LS E+ ++ + N
Sbjct: 425 KGIQSMIPDFLERMAGINRVGLTIAQAIGIMVN---TNLGLLSYEIRRIKRDMDWGANFS 481
Query: 237 VAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAA 292
A F R + + ++ IG+ L + S+ + ++ E+ A
Sbjct: 482 EALMRFEQRISTASIARTVTLITKASEMTGQIGEVLAIAASDAKMSETLKKERLAE 537
Score = 42.6 bits (99), Expect = 0.082, Method: Composition-based stats.
Identities = 26/181 (14%), Positives = 61/181 (33%), Gaps = 16/181 (8%)
Query: 154 ILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESG---ISIDQALRRVAED 210
Y+ + R I +A+ + G +SI AL +
Sbjct: 104 AFGAYIAYLLLLRLPHIEKNNRSIKINLTLHNAVAYMYAMRRGGAELMSIFYAL----SE 159
Query: 211 IGGQSVPLSEEMLLTIAELS-FLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIG 269
++ E ++ F + A + + T +++ + L+ G +
Sbjct: 160 NAPIYGEVALEFRQITRDVDYFGSDMLTAMRHLSSTTPSAKLKDFLEDLLSVIESGGDLS 219
Query: 270 DSL----RVLVSETRSERLMEAEKKAASLGPKLTV----PMIIFFLPVLILVIIGPAILS 321
+ L R+ E R E+ + +T+ P+ + + V++ ++ G A+L
Sbjct: 220 EFLASRVRLYQEEARFEQKQFLTLLSMVAESYVTLFVAGPLFLIIIMVVMGMMGGSAVLQ 279
Query: 322 I 322
+
Sbjct: 280 L 280
>gi|300741823|ref|ZP_07071844.1| putative bacterial type II secretion system protein F domain
protein [Rothia dentocariosa M567]
gi|300381008|gb|EFJ77570.1| putative bacterial type II secretion system protein F domain
protein [Rothia dentocariosa M567]
Length = 284
Score = 69.5 bits (169), Expect = 7e-10, Method: Composition-based stats.
Identities = 46/237 (19%), Positives = 91/237 (38%), Gaps = 20/237 (8%)
Query: 95 DENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVI 154
+ IV LR AG + + V ++ +L + +F L + F
Sbjct: 33 EPKIVVTLRKAGMH-TVTPSAFTGVSILSG----VLAGVLLFALTGLWSFAF-------- 79
Query: 155 LIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQ 214
L GF P V +++ + R+ + + WPDA+D L + +G+S+ +AL +++
Sbjct: 80 LGTGGGFIMPRVVVNHRAKVREGKLWQLWPDAVDHLRSAIRAGLSLPEALIQLS---YRG 136
Query: 215 SVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTS-IGDSLR 273
L E ++ + + N +AL + G S +G L
Sbjct: 137 PYELREAFARFGSDYRATGDFVASLNRLKEYVADPVADNIVEALKIAREVGGSDLGRLLG 196
Query: 274 VLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIG--PAILSIIDTMKD 328
L + R AE +A + + P ++L+++ PA+ +I ++
Sbjct: 197 TLSNFLRENARTRAELQARQSWT-VNAARLACVAPWVVLMLMATQPAVRNIYNSFAG 252
>gi|167463710|ref|ZP_02328799.1| Flp pilus assembly protein TadB-like protein [Paenibacillus larvae
subsp. larvae BRL-230010]
gi|322384398|ref|ZP_08058084.1| hypothetical protein PL1_0930 [Paenibacillus larvae subsp. larvae
B-3650]
gi|321150756|gb|EFX44216.1| hypothetical protein PL1_0930 [Paenibacillus larvae subsp. larvae
B-3650]
Length = 304
Score = 69.5 bits (169), Expect = 7e-10, Method: Composition-based stats.
Identities = 34/199 (17%), Positives = 72/199 (36%), Gaps = 14/199 (7%)
Query: 121 LVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIK 180
L + + ILGI+ Y++ + L G P L+++R+ +
Sbjct: 74 LTILVAGTILGIVGFIFYNQ---------IIMAFLFAAGGCLTPKYRNITLMRRRKEEMN 124
Query: 181 RAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVP----LSEEMLLTIAELSFLPNRQ 236
+ + AL L + +G S++ A R +D+ + +E + + L +
Sbjct: 125 QQFKQALQCLSTSLSAGKSVENAFRDTLQDLELLYPDPSAMIVQEFGVMVRRLDNGEPIE 184
Query: 237 VAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGP 296
F R ++ + N I R G ++ + +R + + E
Sbjct: 185 ACILGFAERAGLEDITNFADVFITCKRTGGNLIEVIRRTSHLISEKLQIVQEISVMVAQK 244
Query: 297 KLTVPMIIFFLPVLILVII 315
K +++ PV I+ I+
Sbjct: 245 KFESKIMLT-APVAIIGIL 262
>gi|167836685|ref|ZP_02463568.1| pilus assembly protein, putative [Burkholderia thailandensis
MSMB43]
Length = 328
Score = 69.5 bits (169), Expect = 7e-10, Method: Composition-based stats.
Identities = 45/293 (15%), Positives = 98/293 (33%), Gaps = 15/293 (5%)
Query: 22 VSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLR 81
V+ S A+V+ L + +L + R ++ + ++ S S L R + +
Sbjct: 6 VAAASAFLAIVVGGLIAAQLF------NLVRHRPARRILQRVKAASGSEPLPRRPVDADK 59
Query: 82 NFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKL 141
+ D + L + + L + + ++ + +
Sbjct: 60 RHQLFSGEQGYGGDNAFLTWLSQ---HLQRVRAVSGPGGLRLIAVATLVSLALSIVATSV 116
Query: 142 LEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISID 201
P LRV I + L+ + + +PDA+DL++ V +GI +
Sbjct: 117 AGLPAWLRVLIDIGVPLA---TARAVYRMLIVRFRLRFLAVFPDAIDLMVRAVRAGIPVV 173
Query: 202 QALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQS 261
A+ + P+ L + + E R Q+ L+
Sbjct: 174 HAIVTAGVE---SQEPVRSTFHTIGDGLRVGADLKEVLEQACERLQIADFSFFAVCLMLQ 230
Query: 262 DRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVI 314
G S+ ++L L R+ R + + KA + K++ +I ++ +
Sbjct: 231 RETGGSLTETLENLSGIIRARRDVRLKTKALTAEGKISAKIIAAVPFAIMGFL 283
>gi|311111714|ref|YP_003982936.1| type II secretion system protein [Rothia dentocariosa ATCC 17931]
gi|310943208|gb|ADP39502.1| type II secretion system protein [Rothia dentocariosa ATCC 17931]
Length = 284
Score = 69.5 bits (169), Expect = 7e-10, Method: Composition-based stats.
Identities = 45/237 (18%), Positives = 90/237 (37%), Gaps = 20/237 (8%)
Query: 95 DENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVI 154
+ I LR AG + + V ++ +L + +F L + F
Sbjct: 33 EPKIAVTLRKAGMH-TITPSAFTGVSILSG----VLAGVLLFALTGLWSFAF-------- 79
Query: 155 LIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQ 214
L GF P V +++ + R+ + + WPDA+D L + +G+S+ +AL +++
Sbjct: 80 LGTGSGFIMPRVVVNHRAKVREGKLWQLWPDAVDHLRSAIRAGLSLPEALIQLS---YRG 136
Query: 215 SVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTS-IGDSLR 273
L E ++ + + N +AL + G S +G L
Sbjct: 137 PYELREAFARFGSDYRATGDFVASLNRLKEYVADPVADNIVEALKIAREVGGSDLGRLLG 196
Query: 274 VLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIG--PAILSIIDTMKD 328
L + R AE +A + + P ++L+++ PA+ +I ++
Sbjct: 197 TLSNFLRENARTRAELQARQSWT-VNAARLACVAPWVVLMLMATQPAVRNIYNSFAG 252
>gi|294146461|ref|YP_003559127.1| Flp pilus assembly protein TadB [Sphingobium japonicum UT26S]
gi|292676878|dbj|BAI98395.1| Flp pilus assembly protein TadB [Sphingobium japonicum UT26S]
Length = 297
Score = 69.5 bits (169), Expect = 7e-10, Method: Composition-based stats.
Identities = 32/150 (21%), Positives = 58/150 (38%), Gaps = 3/150 (2%)
Query: 167 WISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTI 226
W+ Q+R ++ A P +D + G S+ QAL R + + +
Sbjct: 110 WVRRRAQRRVEALIEALPYYIDAVRQMQAVGNSLAQALDRA---LADAPAVVRSYIAPVA 166
Query: 227 AELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLME 286
L A + R ++ + A+ + RYG SI L L + R ++
Sbjct: 167 RRLELGAPVADAMQVLAERLRVPEISMLAAAIRTNMRYGGSISAVLLNLANILRERIRIK 226
Query: 287 AEKKAASLGPKLTVPMIIFFLPVLILVIIG 316
E KAA K++ ++I V + V++
Sbjct: 227 RELKAAISEAKISGRVLIVMPLVAMAVLVA 256
>gi|148976303|ref|ZP_01813027.1| TadB-like protein involved in pilus formation and/or protein
secretion [Vibrionales bacterium SWAT-3]
gi|145964397|gb|EDK29652.1| TadB-like protein involved in pilus formation and/or protein
secretion [Vibrionales bacterium SWAT-3]
Length = 302
Score = 69.1 bits (168), Expect = 7e-10, Method: Composition-based stats.
Identities = 40/193 (20%), Positives = 76/193 (39%), Gaps = 7/193 (3%)
Query: 124 PIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAW 183
I L I + L + +V AV + F A + + + +++
Sbjct: 72 GFIILTAIGFPIASHAFLPKVALYYQVIAVAGLWLTCFFA---LVFYRRKLQVEEFEKSI 128
Query: 184 PDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFY 243
L L+ V +G+S+ QA+ +VA++ G L E L+ + + E+
Sbjct: 129 ISVLGLISRAVSAGLSVPQAIDQVAQNEQGL---LGREFSYIRDNLALGLSLRDTLEDAC 185
Query: 244 NRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMI 303
R R + ALI + G + D L+ L R M + K+ + P++T +
Sbjct: 186 IRLPYHSFRYFSVALILNQSNGGQLRDILQGLSRTMHDNRAMRKKVKSLTSEPRMTA-LF 244
Query: 304 IFFLPVLILVIIG 316
+ LP+ ++ I
Sbjct: 245 LSLLPIGLIGSIA 257
>gi|72162674|ref|YP_290331.1| integral membrane protein [Thermobifida fusca YX]
gi|71916406|gb|AAZ56308.1| putative integral membrane protein [Thermobifida fusca YX]
Length = 310
Score = 69.1 bits (168), Expect = 8e-10, Method: Composition-based stats.
Identities = 20/145 (13%), Positives = 53/145 (36%), Gaps = 4/145 (2%)
Query: 146 FQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALR 205
+ + VG+ +++ +KR+ + P+ +L ++G+++ A+
Sbjct: 103 VLAPLLGLCAAALVGYLF-LAYLNRQEEKRREAFTAQLPELARVLSNATQAGLALPTAID 161
Query: 206 RVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYG 265
A+++ P E+ + + A + R + L+ S R G
Sbjct: 162 MAADELAD---PAGAELRHVAESIKVGQPFEEALNDLRKRMPSREIGVLISTLLVSARSG 218
Query: 266 TSIGDSLRVLVSETRSERLMEAEKK 290
++ +LR + + + E +
Sbjct: 219 GALVTALRNISETLENRKETRREVR 243
>gi|332162958|ref|YP_004299535.1| type II secretion system protein F domain protein [Yersinia
enterocolitica subsp. palearctica 105.5R(r)]
gi|325667188|gb|ADZ43832.1| Type II secretion system protein F domain protein [Yersinia
enterocolitica subsp. palearctica 105.5R(r)]
Length = 223
Score = 69.1 bits (168), Expect = 8e-10, Method: Composition-based stats.
Identities = 36/203 (17%), Positives = 83/203 (40%), Gaps = 9/203 (4%)
Query: 127 FLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDA 186
I+ + I+ + L + + I++ + F + ++ K+ +P++
Sbjct: 1 MPIVYSVSIYSVNYFLFHFNNIIALLFIMVSVICFQ-----LRLSRKRYYRFFKQNFPES 55
Query: 187 LDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRT 246
L ++ + SG SI+Q L R ++I G PL E L L+ + + F + Y R
Sbjct: 56 LLMINMAASSGASINQILERCGQEISG---PLGVEFNLVCRRLNVGESPESVFYDSYQRF 112
Query: 247 QMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFF 306
+ ++ + + G + + L + E +K + +++V II
Sbjct: 113 KYPEFYFLITIILLNLQQGGQLRELTSRLSEVVNKNKATEQKKAVMTAQIRMSV-NIISI 171
Query: 307 LPVLILVIIGPAILSIIDTMKDH 329
+P+ +++ + I++M H
Sbjct: 172 MPIAFSLLLYFLDPTTIESMWHH 194
>gi|218516697|ref|ZP_03513537.1| pilus component protein [Rhizobium etli 8C-3]
Length = 108
Score = 69.1 bits (168), Expect = 8e-10, Method: Composition-based stats.
Identities = 22/81 (27%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Query: 1 MPHYFFDLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQI 60
M + +A+ A+++F+ Y + IP G+L KRMK+V+ ERE +R ++
Sbjct: 1 MSQDLAATLTNPGMLIAVFVAIAVFATFYTIAIPFFERGDLTKRMKAVSTEREQIRARER 60
Query: 61 TSLQKD--SASSRLRTRDSKS 79
+ D + + LR+++++S
Sbjct: 61 ARMNADPGAGKASLRSQNNRS 81
>gi|297157607|gb|ADI07319.1| putative integral membrane protein [Streptomyces bingchenggensis
BCW-1]
Length = 312
Score = 69.1 bits (168), Expect = 8e-10, Method: Composition-based stats.
Identities = 31/190 (16%), Positives = 68/190 (35%), Gaps = 8/190 (4%)
Query: 125 IIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWP 184
++ I ++ L F + AV+ + +++ QKR P
Sbjct: 88 FVYTAGAAIGLWAVAASLLAAFFGPIAAVVAVWSAF-----AFLNWQRQKRIEKFISQLP 142
Query: 185 DALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYN 244
+ +L ++G+++ AL A+++ P EE+ +L+ + A
Sbjct: 143 ELSRILANATQAGLALRTALGMAADEMEA---PAGEELAKVADKLAVGHSIDDALGELAE 199
Query: 245 RTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMII 304
R + L+ S+R G ++ SLR L + E + +T ++
Sbjct: 200 RLPSRELVVLVTTLVLSNRAGGTVVSSLRNLTQTLEERKETRREVRTQLSQVTVTAYVVP 259
Query: 305 FFLPVLILVI 314
+L++
Sbjct: 260 LMGIGTLLLM 269
>gi|319941898|ref|ZP_08016219.1| hypothetical protein HMPREF9464_01438 [Sutterella wadsworthensis
3_1_45B]
gi|319804551|gb|EFW01421.1| hypothetical protein HMPREF9464_01438 [Sutterella wadsworthensis
3_1_45B]
Length = 292
Score = 69.1 bits (168), Expect = 9e-10, Method: Composition-based stats.
Identities = 33/186 (17%), Positives = 74/186 (39%), Gaps = 7/186 (3%)
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
IL ++ L+ V ++++G + + + + + + +P+A+D
Sbjct: 69 ILVMMGALLLGWFLKLSIAAEVLLLVMVGAASWI---IVRRWRLDRARRAFLSRFPEAVD 125
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
+++GI +D+AL+ + E +L E+ + A NF +
Sbjct: 126 NFTRSIQAGIPVDRALKILGE---AYDDEFGRRVLKLCREMKVGLPFREALGNFADELDD 182
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP 308
V + L + G+++ L L R R ++ + KA + + + ++ LP
Sbjct: 183 PDVDFFCEVLALNRETGSALSPMLASLSMMLRERRAIDRKLKALTSESRASA-RVLCLLP 241
Query: 309 VLILVI 314
V IL +
Sbjct: 242 VFILGL 247
>gi|307352385|ref|YP_003893436.1| type II secretion system F domain-containing protein [Methanoplanus
petrolearius DSM 11571]
gi|307155618|gb|ADN34998.1| Type II secretion system F domain protein [Methanoplanus
petrolearius DSM 11571]
Length = 646
Score = 69.1 bits (168), Expect = 9e-10, Method: Composition-based stats.
Identities = 25/172 (14%), Positives = 63/172 (36%), Gaps = 3/172 (1%)
Query: 121 LVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIK 180
VP+ + + +++ + V ++I + P +++ SI+
Sbjct: 368 FTVPLALIYIIAVYLVTPQYSDTELYIAVVDDHVIIAMLIVILPYAVFFEFWRRKLKSIE 427
Query: 181 RAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFE 240
+ PD L+ L G++I A+ + + +S E+ +L + + A
Sbjct: 428 SSIPDFLERLSGINRVGLTIAGAINVLVK---ANLGLISYEIRRIKRDLEWGASVNDALI 484
Query: 241 NFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAA 292
F R + + ++ IG+ L + ++ R ++ E++
Sbjct: 485 RFEERVNTAAIARTVTLITKASEMTGDIGEVLGIASADARMSETLKKERQGE 536
Score = 46.0 bits (108), Expect = 0.009, Method: Composition-based stats.
Identities = 34/223 (15%), Positives = 78/223 (34%), Gaps = 12/223 (5%)
Query: 105 AGFRSEYSLNILLVVRLVVPIIFLILGII------WIFGYDKLLEYPFQLRVGAVILIGY 158
AGF + + + + + + I + + + IL+ +
Sbjct: 48 AGFSAGIAAALFASLIYIPRVSIQIYNVFNLQLPSYYIPQLNQTNFAILAFFVIFILLSF 107
Query: 159 VGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPL 218
+ + + S R + I + +A+ + G + R ++E+ +
Sbjct: 108 ISYHVMIRYPSIKKASRTTKINLSLHNAVSYMFAMRRGGAEMLDIFRSMSEN-AVVYGEV 166
Query: 219 SEEMLLTIAELS-FLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSL----R 273
+ E + + F + A EN T + +++ + L+ G +I + L R
Sbjct: 167 AIEFRQVLRDAEYFGHDLISALENLSMTTPSEKLKDFLEDLVSVTGSGGNISEYLEGRVR 226
Query: 274 VLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIG 316
+ E R E+L +TV + V+I+V++G
Sbjct: 227 MYQEEARFEQLQFLSTLQIVAEAYVTVFVAGPLFLVIIMVVMG 269
>gi|291460201|ref|ZP_06599591.1| putative type II secretion system protein F [Oribacterium sp. oral
taxon 078 str. F0262]
gi|291417148|gb|EFE90867.1| putative type II secretion system protein F [Oribacterium sp. oral
taxon 078 str. F0262]
Length = 483
Score = 69.1 bits (168), Expect = 9e-10, Method: Composition-based stats.
Identities = 26/151 (17%), Positives = 64/151 (42%), Gaps = 8/151 (5%)
Query: 155 LIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAE----- 209
+ + S+ + +KR+ S+ + D + LL+ + +G+S+ A +++E
Sbjct: 306 FSAVLLYLRESLRLRERAKKRELSLLLDYSDLVSKLLLYLGAGLSLRNAFEKISEHYEAL 365
Query: 210 --DIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGT- 266
+ G+ LS E+ + +L + A+ +F R + + Q R G+
Sbjct: 366 PREGPGEERALSGELRTMLLQLKSNVSESEAYRSFARRISLKPYARLIALIEQKRRNGSR 425
Query: 267 SIGDSLRVLVSETRSERLMEAEKKAASLGPK 297
++ ++L++ + + R A++ K
Sbjct: 426 NLREALKLEMEDAFECRKNTAKRLGEEASTK 456
>gi|210614118|ref|ZP_03290054.1| hypothetical protein CLONEX_02267 [Clostridium nexile DSM 1787]
gi|210150819|gb|EEA81827.1| hypothetical protein CLONEX_02267 [Clostridium nexile DSM 1787]
Length = 220
Score = 68.8 bits (167), Expect = 1e-09, Method: Composition-based stats.
Identities = 28/179 (15%), Positives = 68/179 (37%), Gaps = 6/179 (3%)
Query: 150 VGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAE 209
+ A++L Y+ + W ++KR++ + + +A+ L + G S++ A+R +
Sbjct: 11 LCAILLAPYLVYFL-KSWEKQWIEKRKNVFQLQFKEAVQSLATALNVGYSVENAMREALK 69
Query: 210 DIGGQSVP---LSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGT 266
D+ + E + +L + + F RT + V+ + + R G
Sbjct: 70 DLQIIYKKDELIVREFRYMVRQLDVNVTMEKVLQEFSQRTGEEDVQTFVTVFVMAKRSGG 129
Query: 267 SIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVI--IGPAILSII 323
+ +R V + + + E KL ++ +I + P + ++
Sbjct: 130 DMIAIIRNTVQQMSEKADIRREIGTIIASKKLEFKVMSAIPFGMICYMKFSFPEFMGVL 188
>gi|76802097|ref|YP_327105.1| transmembrane protein (type II secretion system proteins TadC)
[Natronomonas pharaonis DSM 2160]
gi|76557962|emb|CAI49546.1| transmembrane protein (homolog 3 to type II secretion system
proteins TadC) [Natronomonas pharaonis DSM 2160]
Length = 672
Score = 68.8 bits (167), Expect = 1e-09, Method: Composition-based stats.
Identities = 30/170 (17%), Positives = 72/170 (42%), Gaps = 5/170 (2%)
Query: 136 FGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVE 195
LL+ P + +L V P + + ++R+ I +PD L++L +
Sbjct: 412 LSVAGLLDAPIRSTTLLFVLPFLVATV-PLMVLYERERRREQKINERFPDTLNILSSANQ 470
Query: 196 SGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNAT 255
GI + +AL V+ G L +E+ + ++ + + + + F NR + V
Sbjct: 471 MGIPLVEALNLVSRWSEG---VLGKELRMVRNDIRWNHDVERSLLKFANRLDVPQVTRTM 527
Query: 256 QALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
+ L + + + + + + +TR+ +E +++ + + + +I F
Sbjct: 528 KLLAKGNHASSDLSKIISIAAEDTRNRYEIERKRR-NEMNAYMAIVIIGF 576
Score = 54.9 bits (131), Expect = 2e-05, Method: Composition-based stats.
Identities = 40/260 (15%), Positives = 87/260 (33%), Gaps = 21/260 (8%)
Query: 73 RTRDSKSLRNFVKKLNLKAILVDENIVNKLRAA--GFRSEYSLNILLVVRLVVPIIFLIL 130
R RD +N + L A G + L +++ +V +I L++
Sbjct: 34 RLRDQHGYVRTWFLMNPDRF---RQLQRWLNQARMGHTYDIYLTKVVLYTVVAAVIGLLV 90
Query: 131 GIIWIFGYDK--------LLEYPFQLRVGAVILIGYVGFCAPS------VWISNLVQKRQ 176
G L P + ++I++G VG A + R+
Sbjct: 91 GGTLAVALSAGGIWAGLGLSAGPVTTLLNSLIVVGTVGLFAGGTLMAGYYYPWFRKDTRK 150
Query: 177 SSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELS-FLPNR 235
+I P A+ + G++ + + +A + +S+E + + ++ F +
Sbjct: 151 RNIDVMLPHAIVYMYALSHGGMNTFEVMEELA-EADEVYGAVSDEFDMIVRDVELFGNDL 209
Query: 236 QVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLG 295
A + N T + + I G+ L E E E ++L
Sbjct: 210 FAALRDARNLTPSENLEQFLDDTISVVDSGSDFSAFLEDEAETYMEEAREEQENFLSTLS 269
Query: 296 PKLTVPMIIFFLPVLILVII 315
+ +++F L ++++
Sbjct: 270 ILSEIYIVVFVAAPLFVIVM 289
>gi|317403409|gb|EFV83922.1| hypothetical protein HMPREF0005_02048 [Achromobacter xylosoxidans
C54]
Length = 281
Score = 68.8 bits (167), Expect = 1e-09, Method: Composition-based stats.
Identities = 39/221 (17%), Positives = 83/221 (37%), Gaps = 9/221 (4%)
Query: 100 NKLRAAGFRSEYSLNILLVVRLVVPIIF-----LILGIIWIFGYDKLLEYPFQLRVGAVI 154
+L A R +R +F L + + + + A +
Sbjct: 22 RRLAPALRRYRERYTRDAGLRFTELFLFVEPTRLWACAVTLALLAAMSAFALTASGMAAV 81
Query: 155 LIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQ 214
G AP++ L ++R ++ P AL +L + +G+++ ALR+V G
Sbjct: 82 GTGVAALRAPAMLAGLLRRRRVRRFEQQLPMALLMLASALRAGVALMPALRQVVAQGGA- 140
Query: 215 SVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRV 274
PL++E L + E A R + A+ + + G ++ ++L
Sbjct: 141 --PLAQEFGLMLREQRLGVPWDEALARLNTRMTAESTTLMVAAMRTAVQTGGNLAEALDS 198
Query: 275 LVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVII 315
+ + ++A + + ++ I+ LPVL+L+ +
Sbjct: 199 IAQTLFARLQLQARLRTLTAQGRMQA-WIVGALPVLLLIAL 238
>gi|149909166|ref|ZP_01897823.1| TadB-like protein involved in pilus formation and/or
proteinsecretion [Moritella sp. PE36]
gi|149807690|gb|EDM67636.1| TadB-like protein involved in pilus formation and/or
proteinsecretion [Moritella sp. PE36]
Length = 311
Score = 68.8 bits (167), Expect = 1e-09, Method: Composition-based stats.
Identities = 40/207 (19%), Positives = 82/207 (39%), Gaps = 10/207 (4%)
Query: 127 FLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDA 186
LI+ + + G + + L +I I + S W+ Q R A+
Sbjct: 86 LLIILAVVVLGIWFFIPFFSSLVRMMIIAIAFPVVLGGSYWLMRTRQHR--EFDAAFTQV 143
Query: 187 LDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRT 246
L + V +GIS+ QA+ ++A+ G L E L +L + A R
Sbjct: 144 LGQMSRAVSAGISVPQAIAQIADYQQGM---LGREFSLIRDKLEIGIGLKQALNQASIRL 200
Query: 247 QMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFF 306
+ ALI ++ G + + L L ++ + ++ + P++T I+
Sbjct: 201 PYVSFHFFSVALILNEENGGQLREVLHSLSRTVHDNAAIKMKIRSLTAEPRMTAA-ILAS 259
Query: 307 LPVLILVIIG----PAILSIIDTMKDH 329
LP+L++ ++ A +++ + + H
Sbjct: 260 LPILLIGVMYFKNPSAFITLTQSPRGH 286
>gi|84386793|ref|ZP_00989818.1| TadB-like protein involved in pilus formation and/or protein
secretion [Vibrio splendidus 12B01]
gi|84378321|gb|EAP95179.1| TadB-like protein involved in pilus formation and/or protein
secretion [Vibrio splendidus 12B01]
Length = 304
Score = 68.4 bits (166), Expect = 1e-09, Method: Composition-based stats.
Identities = 37/197 (18%), Positives = 79/197 (40%), Gaps = 8/197 (4%)
Query: 127 FLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDA 186
F+ L I +L + +G + F + + + ++ +
Sbjct: 75 FIALSAIGFPASGHMLFPQLAMHHQLFAAVG-LWFVCTCALVMYRRKMQVEEFEQGIINV 133
Query: 187 LDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRT 246
L L+ V +G+S+ QA+ +V+E Q L E L+ + + + ++ R
Sbjct: 134 LGLISRAVAAGLSVPQAIEQVSE---TQPGLLGREFSYIRDNLTLGLSLRQSLDDACVRL 190
Query: 247 QMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFF 306
R + ALI + G + D L+ L R M + K+ + P++T + +
Sbjct: 191 PYSSFRYFSVALILNQSNGGQLRDILQSLSRTMHDNRAMRKKVKSLTSEPRMTA-LFLSI 249
Query: 307 LPVLI---LVIIGPAIL 320
LP+ + + ++ PA++
Sbjct: 250 LPLGLLGGIYLMEPAMI 266
>gi|255514159|gb|EET90421.1| type II secretion system protein [Candidatus Micrarchaeum
acidiphilum ARMAN-2]
Length = 344
Score = 68.4 bits (166), Expect = 1e-09, Method: Composition-based stats.
Identities = 33/203 (16%), Positives = 84/203 (41%), Gaps = 11/203 (5%)
Query: 124 PIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAW 183
+ +I + +L+Y F L + I+ G + A + I+ + R++ ++
Sbjct: 37 GVFGFFAILIILPIALSILKYVFILAIILGIVGGVMYLVAIYMVINYKIDDRKTKMEGML 96
Query: 184 PDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFY 243
D + + SGI++D++L A + ++++ ++ + +
Sbjct: 97 SDYFQIASANLRSGIAMDRSLLLAA---RPEFKFFADDIKEMNRQIFSGQTMESGLKYLA 153
Query: 244 NRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMI 303
R + + +A + +I++ RYG ++ D L L + R+++LM+ ++ A L +
Sbjct: 154 GRYKSFTLDHAIRMMIEAQRYGGAMADLLDQLSKDIRNQQLMQ-KEVAGQL-------FM 205
Query: 304 IFFLPVLILVIIGPAILSIIDTM 326
++ P + + M
Sbjct: 206 YSIFIAFAGLVAAPVLYGLTSQM 228
>gi|90412172|ref|ZP_01220178.1| hypothetical Flp pilus assembly protein TadB [Photobacterium
profundum 3TCK]
gi|90326896|gb|EAS43281.1| hypothetical Flp pilus assembly protein TadB [Photobacterium
profundum 3TCK]
Length = 302
Score = 68.4 bits (166), Expect = 1e-09, Method: Composition-based stats.
Identities = 36/195 (18%), Positives = 80/195 (41%), Gaps = 10/195 (5%)
Query: 121 LVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIK 180
L + I ++L I ++ + LL L+ +GF W+ ++KRQ+ +
Sbjct: 75 LKLSIFMMLLTSIGVYINNYLL---LLNSYWLPFLMPALGFLWGWAWL---IKKRQNEFE 128
Query: 181 RAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFE 240
+A+PDAL++++ V +G S+ Q++ V + + + L L + F+
Sbjct: 129 QAFPDALNIMMSAVTAGESVMQSISYVGKTLDNKVGDL---FQDMGERLKLGEPPEQVFK 185
Query: 241 NFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV 300
+ + G + + L+ R ++ +K A + +L+
Sbjct: 186 RASKHYPYPTFLFFVVTIRANMSRGGQLKAVMARLIRVLVDSRTLDKKKSAMTSEARLSA 245
Query: 301 PMIIFFLPVLILVII 315
++ LP + +VI+
Sbjct: 246 KIVAS-LPFIFMVIL 259
>gi|318057611|ref|ZP_07976334.1| hypothetical protein SSA3_06719 [Streptomyces sp. SA3_actG]
gi|318080453|ref|ZP_07987785.1| hypothetical protein SSA3_28141 [Streptomyces sp. SA3_actF]
gi|333024717|ref|ZP_08452781.1| putative integral membrane protein [Streptomyces sp. Tu6071]
gi|332744569|gb|EGJ75010.1| putative integral membrane protein [Streptomyces sp. Tu6071]
Length = 314
Score = 68.4 bits (166), Expect = 1e-09, Method: Composition-based stats.
Identities = 31/156 (19%), Positives = 57/156 (36%), Gaps = 7/156 (4%)
Query: 155 LIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQ 214
+ VG + +++ KR + PD LL +G+++ AL AE++
Sbjct: 115 IAALVGAWSAYAFLNWQRAKRIEAFISQLPDVARLLANATAAGLALRTALAMAAEELEN- 173
Query: 215 SVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRV 274
P EE+ +L+ + A + R + L+ S++ G ++ SLR
Sbjct: 174 --PAGEELSNVADQLALGRSIDEALDELSRRLPSRELVVLVTTLVLSNKAGGTVVGSLRN 231
Query: 275 LVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVL 310
L + E + T F +P L
Sbjct: 232 LTVTLEERKETRREVRTMLSEVNATA----FTVPAL 263
>gi|320158387|ref|YP_004190765.1| flp pilus assembly protein TadB [Vibrio vulnificus MO6-24/O]
gi|319933699|gb|ADV88562.1| flp pilus assembly protein TadB [Vibrio vulnificus MO6-24/O]
Length = 305
Score = 68.4 bits (166), Expect = 1e-09, Method: Composition-based stats.
Identities = 34/193 (17%), Positives = 69/193 (35%), Gaps = 10/193 (5%)
Query: 123 VPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRA 182
+ + L+ I F D +L+ F + +V F L Q + + K
Sbjct: 79 IGLFLLVTAIALYFINDFVLQMDFLTLLMYAQPPLFVVFVI------KLQQAKAAKFKED 132
Query: 183 WPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENF 242
+PDAL++L + SG SI A V + + ++ L L +
Sbjct: 133 FPDALNILSGALSSGQSIVHAFEYVGNQLQN---EVGKQFKLMAERLLMGEDPDDVLSRS 189
Query: 243 YNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPM 302
+ + G + + + + R ++ +K A + +++ +
Sbjct: 190 AASFPYVEYFFFAATIRINLSRGGQLKEVISRINRIMFEARAIDKKKNALTSEARMSAKI 249
Query: 303 IIFFLPVLILVII 315
I LPV+ L+I+
Sbjct: 250 IAC-LPVVFLLIL 261
>gi|323493930|ref|ZP_08099047.1| putative Flp pilus assembly protein TadB [Vibrio brasiliensis LMG
20546]
gi|323311871|gb|EGA65018.1| putative Flp pilus assembly protein TadB [Vibrio brasiliensis LMG
20546]
Length = 304
Score = 68.4 bits (166), Expect = 1e-09, Method: Composition-based stats.
Identities = 35/196 (17%), Positives = 71/196 (36%), Gaps = 12/196 (6%)
Query: 123 VPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSS---I 179
+P+ L+ + + E+ F+ ++I P +++ ++ +Q
Sbjct: 75 MPLKLLVFFSVSSIAIYTINEFFFRQDFVTCLVI-----LEPILFVMFFIKLKQRQEEKF 129
Query: 180 KRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAF 239
K +PDAL++L + SG SI A V + + + E L +
Sbjct: 130 KNNFPDALNILSGAISSGQSIVHAFEYVGKQLDN---EVGNEFKFMAERLLIGEDPDDVL 186
Query: 240 ENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLT 299
E + + G + D + + R +E +K A + + +
Sbjct: 187 ERSATTFPYLEYFFFASTIRINLSRGGQLKDVINRINRLMFDSRAVEKKKNALTSEARAS 246
Query: 300 VPMIIFFLPVLILVII 315
+I LPV+ LVI+
Sbjct: 247 AKIIAC-LPVIFLVIL 261
>gi|254506141|ref|ZP_05118285.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus 16]
gi|219550959|gb|EED27940.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus 16]
Length = 306
Score = 68.4 bits (166), Expect = 1e-09, Method: Composition-based stats.
Identities = 42/222 (18%), Positives = 83/222 (37%), Gaps = 15/222 (6%)
Query: 93 LVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGA 152
L E K++ + L +++++ + + L + + + L +G
Sbjct: 53 LTGETFRQKIQRRVRNIKMQLGAFALLKVLAYCLVVALVSFYANNTFIRVNPLYALVIGQ 112
Query: 153 VILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIG 212
++ I ++ L ++Q + A+PDAL++L V SG S+ ++ V + +
Sbjct: 113 MVGIFSG--------LTILESRQQKEFEMAFPDALNMLASAVSSGESLMHSIIFVGKSLE 164
Query: 213 GQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSL 272
G + EE L + F NR + L + + G + D +
Sbjct: 165 GS---VGEEFKRMGERLQMGESPDTVFRKSCNRFPYRSFQFFVITLRANMQRGGQLKDVI 221
Query: 273 RVLVSETRSERLMEAEKKA----ASLGPKLTVPMIIFFLPVL 310
L R +E +K A A K+ + FFL +L
Sbjct: 222 TRLNRLMFDARAIEKKKYALTSEARTSAKIVAAIPFFFLFML 263
>gi|302536566|ref|ZP_07288908.1| integral membrane protein [Streptomyces sp. C]
gi|302445461|gb|EFL17277.1| integral membrane protein [Streptomyces sp. C]
Length = 312
Score = 68.4 bits (166), Expect = 1e-09, Method: Composition-based stats.
Identities = 37/198 (18%), Positives = 75/198 (37%), Gaps = 10/198 (5%)
Query: 125 IIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWP 184
++++ + ++ L PF V G +G A + +++ +R P
Sbjct: 88 FAYVLMAVAGVWLVSASLLAPFFGPV-----AGLIGLWAANAFLNWQRARRTERFINQLP 142
Query: 185 DALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYN 244
+ +L ++G+++ A+ AE++ P EE+ L+ + + A
Sbjct: 143 ELARILANATQAGLALRTAIGIAAEELEA---PAGEELSRVADRLAVGHSIEEALGEIVE 199
Query: 245 RTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMII 304
R + L+ S R G +I SLR L + E + +T ++
Sbjct: 200 RLPSRELVVLVSTLVLSARAGGAIVGSLRNLTVTLEQRKETRREIRTQLSQVTVTAYLVP 259
Query: 305 FF-LPVLILV-IIGPAIL 320
L L+LV ++ P L
Sbjct: 260 AIGLGSLLLVDLMMPGAL 277
>gi|296132332|ref|YP_003639579.1| hypothetical protein TherJR_0811 [Thermincola sp. JR]
gi|296030910|gb|ADG81678.1| hypothetical protein TherJR_0811 [Thermincola potens JR]
Length = 303
Score = 68.4 bits (166), Expect = 1e-09, Method: Composition-based stats.
Identities = 44/288 (15%), Positives = 104/288 (36%), Gaps = 19/288 (6%)
Query: 14 LAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLR 73
+ + ++ F L + K ++++ +I + +KD +L
Sbjct: 6 IIWSYILPIAAFLLTIWLGSLLFAKDR--KVVRAILKAGDITLSEYELQRRKDG---KLV 60
Query: 74 TRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGII 133
+ + L K L+L+ + + + N L+ G + + LL +V ++ + ++
Sbjct: 61 SLVADFLPKIEKALDLQKLFGYD-LRNMLKMMGEKKK--PERLLADHIVTAVLAGSVMLV 117
Query: 134 WIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLIC 193
L + +I++G + + Q+ + + P+ +D + I
Sbjct: 118 LPLVTGFELYFLLYPVAIILIMVGQA------QMVKKRFKAWQNEVVKDIPELIDKMRIS 171
Query: 194 VESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRN 253
+ SG AL++V E+ G LS+ + I ++ + A + F + +
Sbjct: 172 LASGKDYLSALKKVQENSG---PRLSKIVERLINDMQIMRP-TQALDEFAQAFGLPVMVK 227
Query: 254 ATQALIQSDRYGTSIGDS-LRVLVSETRSERLMEAEKKAASLGPKLTV 300
AL G +S + + R R + E+ + K+
Sbjct: 228 FVAALKVGMEVGYEQAESYFANIEDDIRDLRKLSLEELTKNKPEKVVF 275
>gi|269216232|ref|ZP_06160086.1| putative bacterial type II secretion system protein F domain
protein [Slackia exigua ATCC 700122]
gi|269130491|gb|EEZ61569.1| putative bacterial type II secretion system protein F domain
protein [Slackia exigua ATCC 700122]
Length = 335
Score = 68.4 bits (166), Expect = 2e-09, Method: Composition-based stats.
Identities = 33/197 (16%), Positives = 70/197 (35%), Gaps = 12/197 (6%)
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
L ++ + G L+ + + + A + S ++ PDAL
Sbjct: 111 AFLLLLCMLGTVSLIAARSVIFTACLCALAVACTFAAA---SRRRDAELQRMRELVPDAL 167
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQ 247
+ C +G+++ QA VA + PL + + ++ + A E F +
Sbjct: 168 RCMEACFHAGLTVPQAFAEVARETK---PPLRDAFSMVSHDMELGRSVDEALERFRRASS 224
Query: 248 MDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEK--KAASLGPKLTVPMIIF 305
+ + AL G V ++ ER +E + + + KL+ ++
Sbjct: 225 LPELSFVAMALDVQHACGGDASRI--VQSAQESVERGIELRRSLRVQTAQAKLSAQVVSI 282
Query: 306 FLPVLILVIIG--PAIL 320
L++V+ G P +
Sbjct: 283 MPIALLVVLSGIDPGFM 299
>gi|221070077|ref|ZP_03546182.1| type II secretion system protein [Comamonas testosteroni KF-1]
gi|220715100|gb|EED70468.1| type II secretion system protein [Comamonas testosteroni KF-1]
Length = 322
Score = 68.4 bits (166), Expect = 2e-09, Method: Composition-based stats.
Identities = 43/223 (19%), Positives = 81/223 (36%), Gaps = 12/223 (5%)
Query: 93 LVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGA 152
V + ++ K + AG+ L RL + LI G L A
Sbjct: 66 SVADALLGKEKKAGWPVPAILLGTASARLFYGGLVLIAATFLAVGL-----AVGWLVASA 120
Query: 153 VILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIG 212
+++ +GF + QK ++ + + P LD + V G S+ A + A
Sbjct: 121 ALVLLGIGFF---FLLYARAQKFRARLTQQLPGFLDNTVRLVTIGNSVQAAFQMAAASTK 177
Query: 213 GQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSL 272
PL M + + + A + +T++D + L S RYG + L
Sbjct: 178 D---PLQSVMEKAASLARAGMDLENAVAHVARQTRLDELHLLAAILRISVRYGGRVDLLL 234
Query: 273 RVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVII 315
+ + R E + A + +++ ++ LPV + +I
Sbjct: 235 ERVANFMRDREQAEQDLSAMTAEIRMSA-WVLSLLPVAVCCLI 276
>gi|251795273|ref|YP_003010004.1| type II secretion system protein [Paenibacillus sp. JDR-2]
gi|247542899|gb|ACS99917.1| type II secretion system protein [Paenibacillus sp. JDR-2]
Length = 287
Score = 68.4 bits (166), Expect = 2e-09, Method: Composition-based stats.
Identities = 29/165 (17%), Positives = 62/165 (37%), Gaps = 8/165 (4%)
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
+G + IF L+ + F + L G AP ++ S L+ +R+ ++ + +AL
Sbjct: 59 AAVGFVIIFAAVYLIYHSFIVSG----LFAAGGLAAPRMYKSFLLVRRKERLQLQFKEAL 114
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVP----LSEEMLLTIAELSFLPNRQVAFENFY 243
L + +G S++ A +D+ L E + L + A +
Sbjct: 115 YSLASSLAAGRSVENAFLATIDDLKLLYPDPNTELLLEFRIVKYRLDNGEPLEQALRSLA 174
Query: 244 NRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAE 288
RT +D + + R G + + ++ + ++ E
Sbjct: 175 KRTHLDDITQFSDVFAVCKRSGGDLVEVMKRTSQTIGEKLEVKQE 219
>gi|167767551|ref|ZP_02439604.1| hypothetical protein CLOSS21_02070 [Clostridium sp. SS2/1]
gi|167710843|gb|EDS21422.1| hypothetical protein CLOSS21_02070 [Clostridium sp. SS2/1]
Length = 445
Score = 68.0 bits (165), Expect = 2e-09, Method: Composition-based stats.
Identities = 32/177 (18%), Positives = 70/177 (39%), Gaps = 16/177 (9%)
Query: 139 DKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKR------AWPDALDLLLI 192
+LL + ++ A++ +G W + ++ I+ +P ++ L++
Sbjct: 250 GRLLPAENESQIPAILFLGIAVIIF--FWYHENEKYKEQRIQTLEQSMVEYPQIIEHLIL 307
Query: 193 CVESGISIDQALRRVAEDIGGQSVP-------LSEEMLLTIAELSFLPNRQVAFENFYNR 245
+ +G+S+ AL VA + + + E++ T ++SF + AF +
Sbjct: 308 FLGTGMSVVAALEAVATEYEKEQRRGNKKEIFVYEQIKKTCRQISFGVPQTKAFGEMGKK 367
Query: 246 TQMDCVRNATQALIQSDRYG-TSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVP 301
+ + + L+QS G T + L+ E+ A++K KL P
Sbjct: 368 IGLSSYQKLSVLLVQSITRGSTDLFLRLKEEEEGAFFEKKEHAKRKGEQASTKLLAP 424
>gi|209546005|ref|YP_002277895.1| type II secretion system protein [Rhizobium leguminosarum bv.
trifolii WSM2304]
gi|209538862|gb|ACI58795.1| type II secretion system protein [Rhizobium leguminosarum bv.
trifolii WSM2304]
Length = 287
Score = 68.0 bits (165), Expect = 2e-09, Method: Composition-based stats.
Identities = 35/206 (16%), Positives = 71/206 (34%), Gaps = 5/206 (2%)
Query: 117 LVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQ 176
+ R VP +IL L+ + +++ V F P I +Q+R
Sbjct: 50 VFGRDAVPPYTMILAYGITAIVVFLVVSLIFGPIFGIVIAIPVAFFLPKAVIRYFLQRRW 109
Query: 177 SSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQ 236
I+ P A+D ++ V +G + A+ VA+ +P S E E
Sbjct: 110 LQIESQLPYAVDQIVSAVRTGKPLAVAVNAVAD---TGQMPASREFERIAREQKLGIGLV 166
Query: 237 VAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGP 296
A + + AL R G I + L + + ++ + +S
Sbjct: 167 EALDRHGRTVPSLHFKMVDAALGLFARQGGDISEPLTEMSKSFKEIWKLDQKITTSSSQA 226
Query: 297 KLTVPMIIF--FLPVLILVIIGPAIL 320
++ ++ +L++ P ++
Sbjct: 227 RMNFRVVNGGALFMILMIFFGQPELI 252
>gi|296268209|ref|YP_003650841.1| type II secretion system protein [Thermobispora bispora DSM 43833]
gi|296090996|gb|ADG86948.1| type II secretion system protein [Thermobispora bispora DSM 43833]
Length = 260
Score = 68.0 bits (165), Expect = 2e-09, Method: Composition-based stats.
Identities = 36/142 (25%), Positives = 64/142 (45%), Gaps = 6/142 (4%)
Query: 182 AWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFEN 241
P A+DLL+ C+ +G +D+A+ A+ IGG PL+E M +L + A+
Sbjct: 119 DLPFAIDLLVACLRAGQPVDRAVEVTADAIGG---PLAERMSWVAVQLRLGADPGTAWAG 175
Query: 242 FYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVP 301
+ +I++ + G + D L L + R + A +G ++ P
Sbjct: 176 LA---DEPPAAPFARTMIRAAKGGAPVADVLVRLADDARQAARAASSAAARKVGVQVVAP 232
Query: 302 MIIFFLPVLILVIIGPAILSII 323
+ + FLP +L+ I P I +I
Sbjct: 233 LGLCFLPAFVLLGIIPMIAGLI 254
>gi|308068033|ref|YP_003869638.1| Flp pilus assembly protein TadB [Paenibacillus polymyxa E681]
gi|305857312|gb|ADM69100.1| Flp pilus assembly protein TadB [Paenibacillus polymyxa E681]
Length = 291
Score = 68.0 bits (165), Expect = 2e-09, Method: Composition-based stats.
Identities = 37/190 (19%), Positives = 72/190 (37%), Gaps = 5/190 (2%)
Query: 130 LGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDL 189
L I++ ++ Y F + +L P + L+Q+R+S++ + AL
Sbjct: 61 LCILFSGVLFAMIGYLFYHQWILSLLCAAGAVVTPRYFRKFLLQRRRSALSIQFKQALYS 120
Query: 190 LLICVESGISIDQALRRVAEDIGGQSVP----LSEEMLLTIAELSFLPNRQVAFENFYNR 245
L + +G S++ R ED+ S L E + A L + A + R
Sbjct: 121 LSSSLSAGRSVENGFREAVEDLRLLSPDGDHDLIFEFNIITACLEIGQPVEAALQELARR 180
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
QM+ + N R G + + +R S + L ++ + K ++F
Sbjct: 181 AQMEDITNFADVFAACKRTGGDLVEVVRRASSVIGEK-LEIQQEIGVMIAQKRFESRVMF 239
Query: 306 FLPVLILVII 315
P L ++ +
Sbjct: 240 AAPFLFVLFM 249
>gi|317498623|ref|ZP_07956916.1| bacterial type II secretion system protein F domain-containing
protein [Lachnospiraceae bacterium 5_1_63FAA]
gi|316894110|gb|EFV16299.1| bacterial type II secretion system protein F domain-containing
protein [Lachnospiraceae bacterium 5_1_63FAA]
Length = 434
Score = 67.6 bits (164), Expect = 2e-09, Method: Composition-based stats.
Identities = 32/177 (18%), Positives = 70/177 (39%), Gaps = 16/177 (9%)
Query: 139 DKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKR------AWPDALDLLLI 192
+LL + ++ A++ +G W + ++ I+ +P ++ L++
Sbjct: 239 GRLLPAENESQIPAILFLGIAVIIF--FWYHENEKYKEQRIQTLEQSMVEYPQIIEHLIL 296
Query: 193 CVESGISIDQALRRVAEDIGGQSVP-------LSEEMLLTIAELSFLPNRQVAFENFYNR 245
+ +G+S+ AL VA + + + E++ T ++SF + AF +
Sbjct: 297 FLGTGMSVVAALEAVATEYEKEQRRGNKKEIFVYEQIKKTCRQISFGVPQTKAFGEMGKK 356
Query: 246 TQMDCVRNATQALIQSDRYG-TSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVP 301
+ + + L+QS G T + L+ E+ A++K KL P
Sbjct: 357 IGLSSYQKLSVLLVQSITRGSTDLFLRLKEEEEGAFFEKKEHAKRKGEQASTKLLAP 413
>gi|170720031|ref|YP_001747719.1| type II secretion system protein [Pseudomonas putida W619]
gi|169758034|gb|ACA71350.1| type II secretion system protein [Pseudomonas putida W619]
Length = 293
Score = 67.6 bits (164), Expect = 2e-09, Method: Composition-based stats.
Identities = 31/167 (18%), Positives = 64/167 (38%), Gaps = 8/167 (4%)
Query: 146 FQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALR 205
+ + ++ + +G+ +S L ++R + P LD + +++G +++ A
Sbjct: 90 WVAGLMVLVGLPLLGYF----TLSWLCRRRVHQLVEQLPALLDYSVRSLKAGRTLNDA-- 143
Query: 206 RVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYG 265
V I G PL M + A D +R L + RYG
Sbjct: 144 -VLGGIDGSREPLRSTMTRVRRNVQLGVPLDDAVNELAELYNQDELRLFAMGLRINQRYG 202
Query: 266 TSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLIL 312
+ + + L+ R + KA + ++T MI+ LP+ ++
Sbjct: 203 GNTSELMENLIKLIREREQGSRQLKAMTGETRITA-MILGALPLCMV 248
>gi|295107880|emb|CBL21833.1| hypothetical protein [Ruminococcus obeum A2-162]
Length = 247
Score = 67.6 bits (164), Expect = 3e-09, Method: Composition-based stats.
Identities = 36/216 (16%), Positives = 84/216 (38%), Gaps = 25/216 (11%)
Query: 118 VVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQS 177
+++ +V + L + ++F + L + + + F L+++R+
Sbjct: 15 ILKYLVQGLLLCGAVDYLFYQNPWLMF---------LALPVTVFFL-KWKKKGLIRERKK 64
Query: 178 SIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSV---PLSEEMLLTIAELSFLPN 234
++ + DAL+ L + V++G S++ A+ + D+ + E +L
Sbjct: 65 NLNYQFKDALNALSVAVQAGYSVENAVMACSRDLERLYPQETDIVREFHYMETQLKVSVP 124
Query: 235 RQVAFENFYNRTQMDCVRNATQALIQSDRYGTS----IGDSLRVLVSETRSERLMEAEKK 290
+ +F +R+ ++ + N + R G I S R+L + R +E
Sbjct: 125 VEELLMSFGDRSGIEDIENFAAVFYTAKRTGGDMNRIIQTSSRMLGDKIDVRREIETTLA 184
Query: 291 AASLGPKLTVPMIIFFLPVLILVII---GPAILSII 323
A MI+ +P I++ + P L ++
Sbjct: 185 AKKAEQ-----MIMSLMPAGIILYLKMTSPGFLEVL 215
>gi|315650391|ref|ZP_07903462.1| conserved hypothetical protein [Eubacterium saburreum DSM 3986]
gi|315487318|gb|EFU77629.1| conserved hypothetical protein [Eubacterium saburreum DSM 3986]
Length = 269
Score = 67.6 bits (164), Expect = 3e-09, Method: Composition-based stats.
Identities = 34/203 (16%), Positives = 83/203 (40%), Gaps = 15/203 (7%)
Query: 133 IWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLI 192
+ G L+ Y F V ++ F P + L+ +++ + + +A+ +L
Sbjct: 42 FYAVGILSLISYVFYKSVIIFFVLLPFCFLYPKLKKKELIVEKKRRLLIEFKEAVMILSS 101
Query: 193 CVESGISIDQALRRVAEDIGGQSVP---LSEEMLLTIAELSFLPNRQVAFENFYNRTQMD 249
+ +G S++ +++ ++ V + +E + + + AF++ R+ +
Sbjct: 102 LLNAGYSLENSVKEALVELRLLYVKDNLIIKEFEYICQLIYMNISVERAFDDLAYRSHCE 161
Query: 250 CVRNATQALIQSDRYGTS----IGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
+R+ + L + R G I ++ V+ + R + E+ K ++
Sbjct: 162 DIRSFAKVLRIAKRSGGELESIIAHTVSVIGDKVRIK-----EEIITMTAAKRFEQKVMN 216
Query: 306 FLPVLILVII---GPAILSIIDT 325
LP+LI++ I P +I+ T
Sbjct: 217 ILPLLIVLYIDFSSPGFFNIMYT 239
>gi|114321308|ref|YP_742991.1| type II secretion system protein [Alkalilimnicola ehrlichii MLHE-1]
gi|114227702|gb|ABI57501.1| type II secretion system protein [Alkalilimnicola ehrlichii MLHE-1]
Length = 294
Score = 67.6 bits (164), Expect = 3e-09, Method: Composition-based stats.
Identities = 23/143 (16%), Positives = 61/143 (42%), Gaps = 4/143 (2%)
Query: 167 WISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTI 226
+ Q+R +++ P ++ ++ +++G ++ A+ ++ P++E M
Sbjct: 108 VVYWRGQRRLRAMEAQLPGFVEHIIRSLQAGRTLSVAVAAATREMR---PPVAEVMQRVQ 164
Query: 227 AELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLME 286
E+ + A + + ++D ++ + + RYG S + +V+ R
Sbjct: 165 REVDMGASLSDALQGAADIYRVDALQLVAIGVRINLRYGGSAIQLMEQVVTLLRQRERAR 224
Query: 287 AEKKAASLGPKLTVPMIIFFLPV 309
E KA + +++ ++ LPV
Sbjct: 225 RELKAMTGETRISAG-VLAILPV 246
>gi|15602713|ref|NP_245785.1| hypothetical protein PM0848 [Pasteurella multocida subsp. multocida
str. Pm70]
gi|12721157|gb|AAK02932.1| TadB [Pasteurella multocida subsp. multocida str. Pm70]
Length = 291
Score = 67.2 bits (163), Expect = 3e-09, Method: Composition-based stats.
Identities = 44/210 (20%), Positives = 79/210 (37%), Gaps = 20/210 (9%)
Query: 106 GFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPS 165
G R + + NI + IFLIL +I LE + + + I
Sbjct: 58 GDRKKLARNIF-----ISGAIFLIL--FFINVAYVRLERWLFVLIFVCLFI--------- 101
Query: 166 VWISNLVQKRQSSIKRA-WPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLL 224
V + L Q R + A +P+ + ++ G + Q+L R +D+ GQ L EE
Sbjct: 102 VLVWKLGQYRNQKMFNAMFPEVIQIMNAAATGGAGLLQSLERCGKDLTGQ---LGEEFKA 158
Query: 225 TIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERL 284
L+ + FE+ Y+R + + G I + + L +
Sbjct: 159 IHKRLALGEDPMSVFEDSYSRYPYKEFYFFITIIRTNLSKGGQIREVITRLGRVIADSKK 218
Query: 285 MEAEKKAASLGPKLTVPMIIFFLPVLILVI 314
ME +KKA + +++ ++ F L +
Sbjct: 219 MEQKKKAMTSEARMSAFIVASFPIAFFLFM 248
>gi|148253056|ref|YP_001237641.1| putative Type II secretion system protein [Bradyrhizobium sp.
BTAi1]
gi|146405229|gb|ABQ33735.1| putative Type II secretion system protein precursor [Bradyrhizobium
sp. BTAi1]
Length = 329
Score = 67.2 bits (163), Expect = 3e-09, Method: Composition-based stats.
Identities = 47/261 (18%), Positives = 85/261 (32%), Gaps = 36/261 (13%)
Query: 19 TTAVSIFSLIYAVVIPSLGSGELE--KRMKSVAVEREILRKQQITSLQKDSASSRLRTRD 76
+ I ++ + LE KR+ VA +RE T D L+TR
Sbjct: 21 LVLLLIGGVVLTAALLMGRRTRLEIEKRVNLVAGKRE-------TPGFADGLGELLKTRK 73
Query: 77 SKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIF 136
+ + + +K Y+ + ++ I L G +W
Sbjct: 74 FDARVRRIFTIGIK--------------------YTWAMRSGALKLLLIAALSAGGMWFL 113
Query: 137 GYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVES 196
L + + AP + +S ++ + +PDA+D + + +
Sbjct: 114 TQQLLGLSSLLAVAASAAASFF----APRLLLSREQKQTERMFVDLFPDAVDTVARMLRA 169
Query: 197 GISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQ 256
G+ I A+R VA D S P+S L EL + A + + R
Sbjct: 170 GLPITVAMRTVAVD---GSPPVSRVFGLIADELRIGVPLEEALDTNSREIGLPDFRFFAV 226
Query: 257 ALIQSDRYGTSIGDSLRVLVS 277
A+ G ++ +L L
Sbjct: 227 AMTLQFATGGNLTATLESLSD 247
>gi|264680615|ref|YP_003280525.1| type II secretion system protein [Comamonas testosteroni CNB-2]
gi|262211131|gb|ACY35229.1| type II secretion system protein [Comamonas testosteroni CNB-2]
Length = 321
Score = 67.2 bits (163), Expect = 3e-09, Method: Composition-based stats.
Identities = 37/208 (17%), Positives = 78/208 (37%), Gaps = 8/208 (3%)
Query: 108 RSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVW 167
R+ + + +L+ + + L +I + + A++++G F
Sbjct: 76 RTGWPVPAILLGTASAGLFYGGLVLIAVAFLIVGFAVGWLAGSAALVVLGIGFFFL---- 131
Query: 168 ISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIA 227
+ QK ++ + + P LD + V G S+ A + A PL M +
Sbjct: 132 LYTRAQKYRARLTQQLPGFLDNTVRLVTIGNSVQAAFQMAAASTKD---PLQSVMEKAAS 188
Query: 228 ELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEA 287
+ + A + +T++D + L S RYG + L + + R E
Sbjct: 189 LARAGMDLENAVAHVARQTRLDELHLLAAILRISVRYGGRVDLLLERVANFMRDREQAEQ 248
Query: 288 EKKAASLGPKLTVPMIIFFLPVLILVII 315
+ A + +L+ ++ LPV + +I
Sbjct: 249 DLSAMTAETRLSA-WVLSLLPVAVCCLI 275
>gi|261251277|ref|ZP_05943851.1| flp pilus assembly protein TadB [Vibrio orientalis CIP 102891]
gi|260938150|gb|EEX94138.1| flp pilus assembly protein TadB [Vibrio orientalis CIP 102891]
Length = 304
Score = 67.2 bits (163), Expect = 3e-09, Method: Composition-based stats.
Identities = 31/187 (16%), Positives = 66/187 (35%), Gaps = 7/187 (3%)
Query: 132 IIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKR---AWPDALD 188
++ F + Y + + P +++ ++ +Q ++ +PDAL+
Sbjct: 79 LLVFFSVSSIAIYTINAFFFRQDFVTCLVILEPILFVMFFIKLKQRQEEKFKTNFPDALN 138
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
+L + SG SI A V + + + + E L + E
Sbjct: 139 ILSGAISSGQSIVHAFEYVGKQL---NNEVGNEFKFMAERLLIGEDPDDVLERSATTFPY 195
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP 308
+ + G + D + + R +E +K A + + + +I LP
Sbjct: 196 LEYFFFASTIRINLSRGGQLKDVINRINRLMFDSRAVEKKKNALTSEARASAKIIAC-LP 254
Query: 309 VLILVII 315
V+ LVI+
Sbjct: 255 VIFLVIL 261
>gi|152981651|ref|YP_001355003.1| Flp pilus assembly protein TadB [Janthinobacterium sp. Marseille]
gi|151281728|gb|ABR90138.1| Flp pilus assembly protein TadB [Janthinobacterium sp. Marseille]
Length = 311
Score = 67.2 bits (163), Expect = 4e-09, Method: Composition-based stats.
Identities = 46/298 (15%), Positives = 103/298 (34%), Gaps = 35/298 (11%)
Query: 19 TTAVSIFSLIYAVVIPSLGSGELEKRMKSVAV-EREILRKQQITSLQKDSASSRLRTRDS 77
V++ L+ A I + +L ++ + + + +R + L + + +
Sbjct: 6 LWMVAVAILLLAGGIVLWQNAQLHQQQDATSAFVDQQIRSIEQPQLTSNGELEQPTMQKP 65
Query: 78 KSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFG 137
+S N K L+A +V + I + LV I+ +L ++
Sbjct: 66 RSEANRWGKFCLRAGIV-----------------TTPIFYMTLLVPGIVLTLLAAVFGGV 108
Query: 138 YDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESG 197
+G + L G + + +W+ +R + R P LD ++ G
Sbjct: 109 LS---------AIGTIFLYGTLSYF--RLWL--KATRRHQKMVRQLPAFLDTMVRLTIVG 155
Query: 198 ISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQA 257
S++ A + PL E + + + + + A ++ +
Sbjct: 156 NSLESAFQATV---LTTEEPLRELLDRSNRLVQAGMDLEHALVQKARVFRLQELELIAAV 212
Query: 258 LIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVII 315
+ + R+G L + + R + E A S +L+ I+ LP+ + V +
Sbjct: 213 IGVALRFGGRADTVLERMAAFMRDREYSQNELVALSSETRLSA-WILGLLPIGLGVFM 269
>gi|20091915|ref|NP_617990.1| hypothetical protein MA3097 [Methanosarcina acetivorans C2A]
gi|19917113|gb|AAM06470.1| conserved hypothetical protein [Methanosarcina acetivorans C2A]
Length = 383
Score = 67.2 bits (163), Expect = 4e-09, Method: Composition-based stats.
Identities = 31/185 (16%), Positives = 64/185 (34%), Gaps = 8/185 (4%)
Query: 113 LNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLV 172
+++ ++ L V + ++ + +G Y F L + + GF + N V
Sbjct: 139 ISLAIITSLFVAVFMFVISTVLFYGMPNAFVYVFSLTFL-TLGLSLGGF---PFALYNKV 194
Query: 173 QKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSF- 231
+ +I+ P AL + + G S +RRVA + +S E+ + +
Sbjct: 195 SNKNMNIQHEIPFALSYMSVLASGGSSPLDVIRRVAAE---DYGEISRELSKVMYRIDAL 251
Query: 232 LPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKA 291
+ A T + +R + + + G + L + E R +
Sbjct: 252 GEDGNTAMSYLIQNTSSEHLRAVCIDISNAMQAGGGLQAYLELKSKELMEMRRQAQKAFV 311
Query: 292 ASLGP 296
SL
Sbjct: 312 DSLSI 316
>gi|171320622|ref|ZP_02909642.1| type II secretion system protein [Burkholderia ambifaria MEX-5]
gi|171094135|gb|EDT39222.1| type II secretion system protein [Burkholderia ambifaria MEX-5]
Length = 325
Score = 66.8 bits (162), Expect = 4e-09, Method: Composition-based stats.
Identities = 38/193 (19%), Positives = 76/193 (39%), Gaps = 10/193 (5%)
Query: 125 IIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWP 184
+ I+G I +L+ P L + + + A + V++ + A+P
Sbjct: 97 VASAIVGAIAAIVAMRLVALPGVLHPVIYVGLPLLAMRASYRAL---VERFRLRFLEAFP 153
Query: 185 DALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYN 244
DA+DL++ V +GI + QA+ V + + P+ L + + + +
Sbjct: 154 DAIDLIVRAVRAGIPVTQAISTVGD---SAAEPVRSTFRTMGDSLRVGADLKDVLTHASD 210
Query: 245 RTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKA----ASLGPKLTV 300
R + T L+ G S+G++L L S R+ R + + +A + K+
Sbjct: 211 RLMIADFSFFTVYLLLQRETGGSLGETLDELSSIIRTRRDIRLKTRALTAEGRITTKIIS 270
Query: 301 PMIIFFLPVLILV 313
+ + L LV
Sbjct: 271 AVPFVMIGALFLV 283
>gi|86360425|ref|YP_472313.1| hypothetical protein RHE_PE00149 [Rhizobium etli CFN 42]
gi|86284527|gb|ABC93586.1| hypothetical conserved protein [Rhizobium etli CFN 42]
Length = 321
Score = 66.8 bits (162), Expect = 4e-09, Method: Composition-based stats.
Identities = 34/206 (16%), Positives = 69/206 (33%), Gaps = 5/206 (2%)
Query: 117 LVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQ 176
+ R VP +IL L + +++ V P I +Q+R
Sbjct: 84 VFGRDAVPPYTMILAYAITAIIVFSLISLIFGPIVGIVVAIPVAVFLPKATIRYFLQRRW 143
Query: 177 SSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQ 236
I+ P A+D ++ V +G + A+ VA+ +P S E E
Sbjct: 144 LQIESQLPYAVDQIVSAVRTGKPLAVAVNAVAD---TGQMPASREFERIAREQKLGIGLV 200
Query: 237 VAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGP 296
A + + AL R G I + L + + ++ + +S
Sbjct: 201 EALDRHGRTVPSLHFKMVDAALGLFARQGGDISEPLTEMSKSFKEIWKLDQKISTSSSQA 260
Query: 297 KLTVPMIIF--FLPVLILVIIGPAIL 320
++ ++ +L++ P ++
Sbjct: 261 RMNFRVVNGGALFMILMIFFGQPELI 286
>gi|170022930|ref|YP_001719435.1| type II secretion system protein [Yersinia pseudotuberculosis
YPIII]
gi|169749464|gb|ACA66982.1| type II secretion system protein [Yersinia pseudotuberculosis
YPIII]
Length = 291
Score = 66.8 bits (162), Expect = 4e-09, Method: Composition-based stats.
Identities = 37/206 (17%), Positives = 84/206 (40%), Gaps = 14/206 (6%)
Query: 121 LVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIK 180
+++P+ L++ + +I + Y F V + +I + K K
Sbjct: 67 ILLPLCLLVI-VYYINSTWINVNYSFVFIVNMIFIIVLQ--------LKYSRSKHYLLFK 117
Query: 181 RAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFE 240
+ +P+ L ++ + SG SI+Q L R ++I G PL +E+ L L+ + F
Sbjct: 118 QDFPEVLLMINMAASSGASINQVLERCGKEIRG---PLGQELGLICRRLNLGETPETVFY 174
Query: 241 NFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV 300
+ Y R ++ + + G + + + L ++ E +K + +++V
Sbjct: 175 DAYERFHYPEFYFLVTIILLNIQQGGQLKELITRLSQIITKKKTTEQKKAVMTAQIRMSV 234
Query: 301 PM--IIFFLPVLILVIIGPAILSIID 324
+ I+ L +L ++ P + +
Sbjct: 235 NIISIMPILFSFLLYLLDPTTIEFVW 260
>gi|37676257|ref|NP_936653.1| Flp pilus assembly protein TadB [Vibrio vulnificus YJ016]
gi|37200798|dbj|BAC96623.1| Flp pilus assembly protein TadB [Vibrio vulnificus YJ016]
Length = 305
Score = 66.8 bits (162), Expect = 4e-09, Method: Composition-based stats.
Identities = 33/193 (17%), Positives = 68/193 (35%), Gaps = 10/193 (5%)
Query: 123 VPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRA 182
+ + L+ I D +L+ F + +V F L Q + + K
Sbjct: 79 IGLFLLVTAIALYLTNDFVLQMNFLTLLMYAQPPLFVVFVI------KLQQAKAAKFKED 132
Query: 183 WPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENF 242
+PDAL++L + SG SI A V + + ++ L L +
Sbjct: 133 FPDALNILSGALSSGQSIVHAFEYVGNQLQN---EVGKQFKLMAERLLMGEDPDDVLSRS 189
Query: 243 YNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPM 302
+ + G + + + + R ++ +K A + +++ +
Sbjct: 190 AASFPYVEYFFFAATIRINLSRGGQLKEVISRINRIMFEARAIDKKKNALTSEARMSAKI 249
Query: 303 IIFFLPVLILVII 315
I LPV+ L+I+
Sbjct: 250 IAC-LPVVFLLIL 261
>gi|326424176|ref|NP_762075.2| Flp pilus assembly protein TadB [Vibrio vulnificus CMCP6]
gi|319999559|gb|AAO07065.2| Flp pilus assembly protein TadB [Vibrio vulnificus CMCP6]
Length = 305
Score = 66.8 bits (162), Expect = 4e-09, Method: Composition-based stats.
Identities = 33/193 (17%), Positives = 68/193 (35%), Gaps = 10/193 (5%)
Query: 123 VPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRA 182
+ + L+ I D +L+ F + +V F L Q + + K
Sbjct: 79 IGLFLLVTAIALYLTNDFVLQMNFLTLLMYAQPPLFVVFVI------KLQQAKAAKFKED 132
Query: 183 WPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENF 242
+PDAL++L + SG SI A V + + ++ L L +
Sbjct: 133 FPDALNILSGALSSGQSIVHAFEYVGNQLQN---EVGKQFKLMAERLLMGEDPDDVLSRS 189
Query: 243 YNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPM 302
+ + G + + + + R ++ +K A + +++ +
Sbjct: 190 AASFPYVEYFFFAATIRINLSRGGQLKEVISRINRIMFEARAIDKKKNALTSEARMSAKI 249
Query: 303 IIFFLPVLILVII 315
I LPV+ L+I+
Sbjct: 250 IAC-LPVVFLLIL 261
>gi|317489755|ref|ZP_07948254.1| hypothetical protein HMPREF1023_01953 [Eggerthella sp. 1_3_56FAA]
gi|316911101|gb|EFV32711.1| hypothetical protein HMPREF1023_01953 [Eggerthella sp. 1_3_56FAA]
Length = 322
Score = 66.8 bits (162), Expect = 4e-09, Method: Composition-based stats.
Identities = 32/148 (21%), Positives = 61/148 (41%), Gaps = 3/148 (2%)
Query: 167 WISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTI 226
W+ + KR+ +++ PDAL + +C ++G+S+ Q ++VA ++ G PL
Sbjct: 134 WLRTVQDKRRDALREGIPDALRSMAVCFQAGLSLLQTFQQVASEVQG---PLGTLFARAA 190
Query: 227 AELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLME 286
+L A E + + + AL + G S+ L +SE +
Sbjct: 191 HQLETGEGAGRALEVLRRGSSVAELAFVAVALDVQHQAGGSMKQVLDAARDTVQSEIELR 250
Query: 287 AEKKAASLGPKLTVPMIIFFLPVLILVI 314
+ + KL+ ++ VLI V
Sbjct: 251 RALRVQTAQAKLSARVVSVLPFVLIAVF 278
>gi|257790306|ref|YP_003180912.1| type II secretion system protein [Eggerthella lenta DSM 2243]
gi|325830204|ref|ZP_08163661.1| type II secretion system protein F domain protein [Eggerthella sp.
HGA1]
gi|257474203|gb|ACV54523.1| type II secretion system protein [Eggerthella lenta DSM 2243]
gi|325487671|gb|EGC90109.1| type II secretion system protein F domain protein [Eggerthella sp.
HGA1]
Length = 322
Score = 66.8 bits (162), Expect = 4e-09, Method: Composition-based stats.
Identities = 32/148 (21%), Positives = 61/148 (41%), Gaps = 3/148 (2%)
Query: 167 WISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTI 226
W+ + KR+ +++ PDAL + +C ++G+S+ Q ++VA ++ G PL
Sbjct: 134 WLRTVQDKRRDALREGIPDALRSMAVCFQAGLSLLQTFQQVASEVQG---PLGTLFARAA 190
Query: 227 AELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLME 286
+L A E + + + AL + G S+ L +SE +
Sbjct: 191 HQLETGEGAGRALEVLRRGSSVAELAFVAVALDVQHQAGGSMKQVLDAARDTVQSEIELR 250
Query: 287 AEKKAASLGPKLTVPMIIFFLPVLILVI 314
+ + KL+ ++ VLI V
Sbjct: 251 RALRVQTAQAKLSARVVSVLPFVLIAVF 278
>gi|220918107|ref|YP_002493411.1| type II secretion system protein [Anaeromyxobacter dehalogenans
2CP-1]
gi|219955961|gb|ACL66345.1| type II secretion system protein [Anaeromyxobacter dehalogenans
2CP-1]
Length = 321
Score = 66.8 bits (162), Expect = 4e-09, Method: Composition-based stats.
Identities = 25/161 (15%), Positives = 61/161 (37%), Gaps = 6/161 (3%)
Query: 164 PSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEML 223
P++ + +R + + P+ALD++ + +G + A VA ++ P++ E
Sbjct: 130 PTLLLVVARDRRSNRLSEQLPEALDMMARSLRAGHAFTSAFEVVATEM---PEPVAVEFA 186
Query: 224 LTIAELSFLPNRQVAFENFYNRT-QMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSE 282
+ A R +R + + G ++ + L + R+
Sbjct: 187 RAFESQRLGLPVEQAIVQMTERAPGNRDLRIFAVSALIQKETGGNLAEILGSIAETIRAR 246
Query: 283 RLMEAEKKAASLGPKLTVPM--IIFFLPVLILVIIGPAILS 321
++ A + + + + ++ L L+L I+ PA +
Sbjct: 247 YRFYSKLSALTAEGRASGAILGMLPILMALVLRIMNPAYMG 287
>gi|311112132|ref|YP_003983354.1| type II secretion system protein [Rothia dentocariosa ATCC 17931]
gi|310943626|gb|ADP39920.1| type II secretion system protein [Rothia dentocariosa ATCC 17931]
Length = 474
Score = 66.8 bits (162), Expect = 4e-09, Method: Composition-based stats.
Identities = 30/141 (21%), Positives = 60/141 (42%), Gaps = 4/141 (2%)
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
L+LL + +G+ + AL+ + + + +S+ + L+ + Q A++
Sbjct: 336 MLELLAAQLRAGLGLTGALQALGRALAHEERAISDALEHITLTLTVSADWQAAWDG---- 391
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
+R + L + GT LR + R E AE+ +A L L +P+ +
Sbjct: 392 YDHPLLRELARILAPAYSAGTPSSALLRHCAATYRLEERRAAERASAKLAVALVLPLGLC 451
Query: 306 FLPVLILVIIGPAILSIIDTM 326
LP I I P ++S++ +
Sbjct: 452 SLPAFICCGIIPIVISLLPGL 472
>gi|15895249|ref|NP_348598.1| hypothetical protein CA_C1978 [Clostridium acetobutylicum ATCC 824]
gi|15024959|gb|AAK79938.1|AE007702_5 Predicted membrane protein [Clostridium acetobutylicum ATCC 824]
gi|325509395|gb|ADZ21031.1| membrane protein [Clostridium acetobutylicum EA 2018]
Length = 279
Score = 66.8 bits (162), Expect = 4e-09, Method: Composition-based stats.
Identities = 44/213 (20%), Positives = 82/213 (38%), Gaps = 15/213 (7%)
Query: 67 SASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPII 126
+SR + +L K NL + + I +KL +G + + + V+ V I
Sbjct: 27 KFNSRYKKAKGSNLVIKHKTYNLIKLFNRKLIEDKLIKSGNPFKLNFKTYIFVKFVTSTI 86
Query: 127 FLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSV--WISNLVQKRQSSIKRAWP 184
I + +I + I +GF + ++SN K + I+
Sbjct: 87 AAIASLQYIGLS--------FIGCLFGITASILGFFLVDILNYLSNKDDK--NKIRLDLA 136
Query: 185 DALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYN 244
D DL+ I +G+SI AL V + +S L + ++ A+++ N + A + F
Sbjct: 137 DVYDLITIQTIAGVSIGHALLEV--NTVCKSKRLKKSLIRLAAKINLSKNIEKALDEFNQ 194
Query: 245 RTQMDCVRNATQALIQSDRYGTSIGDSLRVLVS 277
M + + +S G S ++L S
Sbjct: 195 EYDMHEIDAFVAVIKESITSGVS-EEALDDQSS 226
>gi|161524902|ref|YP_001579914.1| type II secretion system protein [Burkholderia multivorans ATCC
17616]
gi|189350348|ref|YP_001945976.1| Flp pilus assembly protein [Burkholderia multivorans ATCC 17616]
gi|160342331|gb|ABX15417.1| type II secretion system protein [Burkholderia multivorans ATCC
17616]
gi|189334370|dbj|BAG43440.1| Flp pilus assembly protein [Burkholderia multivorans ATCC 17616]
Length = 330
Score = 66.8 bits (162), Expect = 4e-09, Method: Composition-based stats.
Identities = 55/313 (17%), Positives = 96/313 (30%), Gaps = 28/313 (8%)
Query: 22 VSIFSLIYAVVIPSLGSGELEKRMKSVAVE----REILRKQQITSLQKDSASSRLRTRDS 77
V + +++ A L +R+++ A R + T + ASS RT
Sbjct: 8 VLVVAMLCAASALMLWRHAETRRVRTDAKRFIDSRLEPGARMATPAARPVASSGARTAPP 67
Query: 78 KSLRNFVKKLNLKAILVD---ENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIW 134
R V + L E + N + AG +++ +
Sbjct: 68 SGDRWNVASKEFRTHLYAVAWEYLDNLVSRAGIEGARGKSVVAL---------------- 111
Query: 135 IFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICV 194
+ V A G VW+++ +Q+R+ I R P LD ++ V
Sbjct: 112 VALIAIAAIAGAHGGVLACFAALACGSAIFGVWLASRIQRRRLKIVRQIPSFLDGIVRLV 171
Query: 195 ESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNA 254
G S+ A + + PL + L A + +
Sbjct: 172 TLGNSVPAAFQSA---LQTTEEPLRGCLDHVSRMLRTGVEIDRAMLHIAKIYRTKEFELL 228
Query: 255 TQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLT--VPMIIFFLPVLIL 312
L S +YG L + R E E A S +L+ V M++ +
Sbjct: 229 GSVLRLSVKYGGRADVMLERMAIFMRDLEQAERELTAMSAETRLSAFVLMMLPIAIGSFV 288
Query: 313 VIIGPAILSIIDT 325
V+ P L +
Sbjct: 289 VMTNPKYLQGMWN 301
>gi|297627214|ref|YP_003688977.1| hypothetical protein PFREUD_20690 [Propionibacterium freudenreichii
subsp. shermanii CIRM-BIA1]
gi|296922979|emb|CBL57561.1| Hypothetical membrane protein [Propionibacterium freudenreichii
subsp. shermanii CIRM-BIA1]
Length = 247
Score = 66.8 bits (162), Expect = 5e-09, Method: Composition-based stats.
Identities = 34/150 (22%), Positives = 63/150 (42%), Gaps = 6/150 (4%)
Query: 173 QKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFL 232
+ R+ ++ P+ LDL+ E+G + +A VA P + + A L
Sbjct: 98 RARREALLGQQPEVLDLIAAAQEAGSPLRRAAGEVA---ALAPEPSASVLREVDAHLRVG 154
Query: 233 PNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAA 292
+ A+++ + + L +S R G ++ D++ + + TR KKA
Sbjct: 155 FSEAEAWQSLA---DDPVWGSTARDLARSARTGEAVADTIHLHATRTREAHRDHLNKKAR 211
Query: 293 SLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
++ K PM+ FLP IL + P + I
Sbjct: 212 TVAVKSVGPMMACFLPAFILAGVVPIFVGI 241
>gi|75992384|dbj|BAE45050.1| putative integral membrane protein [Terrabacter sp. DBF63]
Length = 300
Score = 66.8 bits (162), Expect = 5e-09, Method: Composition-based stats.
Identities = 41/216 (18%), Positives = 92/216 (42%), Gaps = 11/216 (5%)
Query: 114 NILLVVRLVVPII-FLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLV 172
+L+VP++ F++L ++ + L PF + G +LI V + AP + + +
Sbjct: 92 RRFWAQKLLVPLLGFVVLAMLGVLLSALNLGLPFAVPFGVGLLIAGVLWFAPDLVVRDQA 151
Query: 173 QKRQSSIKRAWPDALDLLLICVESGISIDQAL---RRVAEDIGGQSVPLSEEMLLTIAEL 229
++R+ A L L+ I + A+ R++++ + E + A+
Sbjct: 152 KERREEFAFATISYLRLVAIRRLGHEGVVSAMSGAARISDEW--MFTRIRETLQR--AQW 207
Query: 230 SFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEK 289
S +P A + + Q+ + + + G SI DSL + R L + +
Sbjct: 208 SNVPPW-DALDELADDLQVPELHEIAD-ITRLTSSGGSITDSLMSRAASMRDRLLSKEQV 265
Query: 290 KAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDT 325
+A+ L+ P+ + + + + ++ P +S+I +
Sbjct: 266 RASDATTSLSAPLAVLIM-LFMASLLFPMGISLIGS 300
>gi|197117443|ref|YP_002137870.1| Flp pilus assembly protein [Geobacter bemidjiensis Bem]
gi|197086803|gb|ACH38074.1| Flp pilus assembly protein, putative [Geobacter bemidjiensis Bem]
Length = 320
Score = 66.4 bits (161), Expect = 5e-09, Method: Composition-based stats.
Identities = 36/305 (11%), Positives = 96/305 (31%), Gaps = 38/305 (12%)
Query: 16 VAITTAVSIFSLIYAVVIPSL-----GSGELEKRMKSVAVERE-ILRKQQITSLQKDSAS 69
+ ++ F + A + G L++R++++A ER+ + ++ ++ + +++
Sbjct: 5 IVALIFLAAFGVFLAAFLYLAQRQTSGRTVLKRRLQTMAGERQGEIPEEFLSVISREAER 64
Query: 70 SRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLI 129
+ + +R + +L AG + + L+
Sbjct: 65 ASELLTRAPQMR---------------TLGKRLEQAGIQ--------------LSASLLL 95
Query: 130 LGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDL 189
+ +L L V + + ++R +PDAL +
Sbjct: 96 GSTMAAALGLAILLGLKTQSPLVGFLAAVVVLLVAELMLRVKTERRSIKFTEQFPDALSI 155
Query: 190 LLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMD 249
+ +G S A++ V +++ PL + A R
Sbjct: 156 AARSLRAGHSFPTAIQLVGQEVPSPVGPL---FKTAYEQQQLGLRMVDALMRMNERIDSL 212
Query: 250 CVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPV 309
+R T + + G ++ + L L R + + + + +L+ ++
Sbjct: 213 DLRFFTTLVAINSDIGGNLSELLDKLAMTIRERLKIRRQVQVYTAQGRLSGYVLAALPIA 272
Query: 310 LILVI 314
+
Sbjct: 273 TFGIF 277
>gi|139438670|ref|ZP_01772154.1| Hypothetical protein COLAER_01155 [Collinsella aerofaciens ATCC
25986]
gi|133775750|gb|EBA39570.1| Hypothetical protein COLAER_01155 [Collinsella aerofaciens ATCC
25986]
Length = 213
Score = 66.4 bits (161), Expect = 5e-09, Method: Composition-based stats.
Identities = 21/132 (15%), Positives = 45/132 (34%), Gaps = 4/132 (3%)
Query: 182 AWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLP-NRQVAFE 240
+ +D++ + + +G+S D AL + L+ + R+
Sbjct: 72 EVSEMIDVVRLGLSAGLSFDAALEIFC---ANRRSVLALRLERACMAWQVGVGTREDELL 128
Query: 241 NFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV 300
+ + + Q+ G + ++L E R+ E++ KL +
Sbjct: 129 AAARDLDVRALETFAITVGQALALGAPLAETLAAQSREIRAAHRAAVEREIERAPIKLLI 188
Query: 301 PMIIFFLPVLIL 312
P LP L+L
Sbjct: 189 PTGTLILPALLL 200
>gi|254381955|ref|ZP_04997318.1| integral membrane protein [Streptomyces sp. Mg1]
gi|194340863|gb|EDX21829.1| integral membrane protein [Streptomyces sp. Mg1]
Length = 312
Score = 66.4 bits (161), Expect = 5e-09, Method: Composition-based stats.
Identities = 30/179 (16%), Positives = 68/179 (37%), Gaps = 8/179 (4%)
Query: 125 IIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWP 184
+++++ ++ ++ PF V AVI G A + +++ +R P
Sbjct: 88 LVYVLAAVVGVWLVSASFLAPFFGPVAAVI-----GLWAANAFLNWQRSRRNERFINQLP 142
Query: 185 DALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYN 244
+ +L ++G+++ A+ A+++ P EE+ L+ + + +
Sbjct: 143 ELARILANATQAGLALRTAIGMAADELEA---PAGEELARVADRLAIGHSIEESLGEITE 199
Query: 245 RTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMI 303
R + L+ S R G +I SLR L + E + +T ++
Sbjct: 200 RLPSRELVVLVSTLVLSARAGGAIVGSLRNLTVTLEQRKETRREIRTQLSQVTVTAYLV 258
>gi|222479408|ref|YP_002565645.1| type II secretion system protein [Halorubrum lacusprofundi ATCC
49239]
gi|222452310|gb|ACM56575.1| type II secretion system protein [Halorubrum lacusprofundi ATCC
49239]
Length = 680
Score = 66.4 bits (161), Expect = 5e-09, Method: Composition-based stats.
Identities = 46/271 (16%), Positives = 104/271 (38%), Gaps = 33/271 (12%)
Query: 63 LQKDSASSRLRTRDSKSL------RNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNIL 116
L+ D S RLR + L FV + + + + K + + ++
Sbjct: 332 LRPDGGSDRLRQTSKEGLLHFGLIEAFVGQFGVFDRIRNREGTYKTKQI----VSAPHLF 387
Query: 117 L------VVRLVVPIIFLILGIIWIFG-----YDKLLEYPFQLRVGAVILIGYVGFCAPS 165
L + L VP +I+G+ I G +D + P V + Y+ AP
Sbjct: 388 LRDNPLYTLALTVPAALVIVGVTVISGNAPTTFDGWVNRPVWATFVWVYVPAYL-VLAPL 446
Query: 166 VWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLT 225
Q+ + +I ++L L ++G ++ +++ V+E G+ L+EE +
Sbjct: 447 AVFHEWSQRSKRAITGKLSESLRKLSSANDTGQTLLESVETVSETSTGK---LAEEFEVV 503
Query: 226 IAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLV------SET 279
A++++ + + A F N+ + + + + ++ + I D L +
Sbjct: 504 HAKVNYGMSLRDALVEFNNKYAVPRLARTVKLISEAQEASSEITDVLTTAAQASENQDDI 563
Query: 280 RSERLMEAEKKAASLGPKLTVPMIIFFLPVL 310
R+ + + A + +T ++ + +L
Sbjct: 564 ERNRISQTRMQVAIIV--MTYVTLLGVMAIL 592
Score = 38.3 bits (88), Expect = 1.7, Method: Composition-based stats.
Identities = 32/188 (17%), Positives = 63/188 (33%), Gaps = 24/188 (12%)
Query: 106 GFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPS 165
G + + LVVP L+ G+++ F + G V+ I Y
Sbjct: 95 GMPAPTPAIKAFLRSLVVPTAVLVSGLVF-------GSIGFAIGFGGVVAIPY------- 140
Query: 166 VWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLT 225
+ R+ I D++ + G++ + LR +A +S+E
Sbjct: 141 ----SRASAREREINLLLADSVSFMYALSVGGLNQLEILRAMAT-AEDTYGEVSQEFQSI 195
Query: 226 IAELS-FLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRV----LVSETR 280
+ E F + + A T D + ++ G ++ L+ + ++
Sbjct: 196 VNETEYFGTDYRNAIRQQSMETPSDELSQFLADMLSIVNSGGNMESFLKDKKEKHLRTSK 255
Query: 281 SERLMEAE 288
ER M E
Sbjct: 256 QEREMTLE 263
>gi|172062963|ref|YP_001810614.1| type II secretion system protein [Burkholderia ambifaria MC40-6]
gi|171995480|gb|ACB66398.1| type II secretion system protein [Burkholderia ambifaria MC40-6]
Length = 325
Score = 66.4 bits (161), Expect = 5e-09, Method: Composition-based stats.
Identities = 50/296 (16%), Positives = 104/296 (35%), Gaps = 22/296 (7%)
Query: 22 VSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLR 81
+ +++ L L R + +R R +++ + T
Sbjct: 6 LFALGAFVVILVIGLMLSALLDRARQAPEQRIRERMRRLAPSLAGREAGAHATPGVALFN 65
Query: 82 NFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKL 141
++ ++A L + ++ +R+V I I+G I KL
Sbjct: 66 LPRRQGRVRAWLQRYVTRVR----------AVGGERGMRIV--IASAIVGEIAAIVAMKL 113
Query: 142 LEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISID 201
+ P L + + + A + V++ + A+PDA+DL++ V +GI +
Sbjct: 114 VALPSVLHPLIYVGLPLLAMRASYRAL---VERFRLRFLEAFPDAIDLIVRAVRAGIPVT 170
Query: 202 QALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQS 261
QA+ V + + P+ L + + +R + T L+
Sbjct: 171 QAISTVGD---SAAEPVRSTFRTMGDSLRVGVDLKDVLTQASDRLMIADFSFFTVYLLLQ 227
Query: 262 DRYGTSIGDSLRVLVSETRSERLMEAEKKA----ASLGPKLTVPMIIFFLPVLILV 313
G S+G++L L S R+ R + + +A + K+ + + L LV
Sbjct: 228 RETGGSLGETLDELSSIIRTRRDIRLKTRALTAEGRITTKIISAVPFVMIGALFLV 283
>gi|160935910|ref|ZP_02083284.1| hypothetical protein CLOBOL_00803 [Clostridium bolteae ATCC
BAA-613]
gi|158441152|gb|EDP18869.1| hypothetical protein CLOBOL_00803 [Clostridium bolteae ATCC
BAA-613]
Length = 245
Score = 66.4 bits (161), Expect = 5e-09, Method: Composition-based stats.
Identities = 41/201 (20%), Positives = 85/201 (42%), Gaps = 7/201 (3%)
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
+L G L Y F V +++ VG C P SNL ++R ++ + + +
Sbjct: 14 LLYGALGVGACGLASYVFYRSVVVFLILMPVGACYPLYRRSNLKKERARRLELQFKEGIQ 73
Query: 189 LLLICVESGISIDQALRRVAEDIG---GQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
+L + +G S++ L +++ G+ ++EE + + + F +F R
Sbjct: 74 VLSSFLSAGYSLENGLTLSIKELEILFGRREMITEEFRILSDGIRMNRPAEELFMDFGRR 133
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
+ ++ V N Q L + R G + + +R R + + E+ L ++ I+
Sbjct: 134 SGVEDVDNFAQVLSAAKRSGGELVEIIRQTAGIIRDK-VQVKEEIHTMLASRIFEQRIMN 192
Query: 306 FLPVLILVII---GPAILSII 323
+P LI++ I P S++
Sbjct: 193 LIPFLIVLYIDLTSPGFFSVM 213
>gi|258515695|ref|YP_003191917.1| type II secretion system protein [Desulfotomaculum acetoxidans DSM
771]
gi|257779400|gb|ACV63294.1| type II secretion system protein [Desulfotomaculum acetoxidans DSM
771]
Length = 306
Score = 66.4 bits (161), Expect = 5e-09, Method: Composition-based stats.
Identities = 31/191 (16%), Positives = 68/191 (35%), Gaps = 8/191 (4%)
Query: 125 IIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWP 184
+L FG K L + + + +G P ++ ++ KR + +
Sbjct: 80 FAMEVLCAAIAFGILKFLFTSTYVALIGIP----IGLYVPINILNAMISKRGELLAKQLH 135
Query: 185 DALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYN 244
L + + SG+S+ QA+ A IG + ++EE+ ++ + A E
Sbjct: 136 GCLIIWANSLRSGVSLAQAI---AGSIGRVAPQINEELKRIKYDIDLGFSSADALEKALV 192
Query: 245 RTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMII 304
R + + + G ++ + + KA + KL +
Sbjct: 193 RIPVAEFKMVVMTAKIHRQLGGNLAERFDNICLTIEERIATRDVLKAHTTQAKLGAV-VA 251
Query: 305 FFLPVLILVII 315
+P ++L+I+
Sbjct: 252 GLMPFIVLIIL 262
>gi|291546643|emb|CBL19751.1| Flp pilus assembly protein TadB [Ruminococcus sp. SR1/5]
Length = 260
Score = 66.4 bits (161), Expect = 5e-09, Method: Composition-based stats.
Identities = 28/171 (16%), Positives = 72/171 (42%), Gaps = 11/171 (6%)
Query: 163 APSVWISNLVQ----KRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQS--- 215
P +++ + ++Q + + DAL + + V++G S + A+R +D+G
Sbjct: 59 IPVLFLKMQRKKCTARQQRELNYQFRDALTAMNVAVQAGYSAENAVRASVKDLGRLYEKG 118
Query: 216 VPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVL 275
+ +E ++L + F + R+ ++ + N + R G + ++ +
Sbjct: 119 SDILDEFRYIESQLRLSVPVEELFLDLGKRSGVEDIENFAAVFYTAKRTGGDMTQVIQKV 178
Query: 276 VSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVII---GPAILSII 323
+ ++ E +A +L K + M++ +P I+ + P L ++
Sbjct: 179 ARMLSDKIEVKKEIEA-TLAAKKSEQMVMSIMPAGIICYLKLTSPGFLDVL 228
>gi|271962055|ref|YP_003336251.1| hypothetical protein Sros_0482 [Streptosporangium roseum DSM 43021]
gi|270505230|gb|ACZ83508.1| hypothetical protein Sros_0482 [Streptosporangium roseum DSM 43021]
Length = 193
Score = 66.4 bits (161), Expect = 6e-09, Method: Composition-based stats.
Identities = 34/189 (17%), Positives = 68/189 (35%), Gaps = 6/189 (3%)
Query: 134 WIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLIC 193
G L + + V A S ++ + + P A DL++ C
Sbjct: 4 AAIGLMVFLVVGGAPGIVIGVAGSAVALVAVQRRESPRARRERDRVVADLPLAADLMVAC 63
Query: 194 VESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRN 253
+ +G I A+ E +GG PL E + +L + A++ +
Sbjct: 64 LRAGQPITGAIDVTVEAVGG---PLGERLAWVSGQLRLGAAPESAWQALAAE---PPLAP 117
Query: 254 ATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILV 313
+ + ++ G + D L L ++R + A +G + P+ + FLP + +
Sbjct: 118 LARMMSRAALSGAPVADVLTRLSDDSRHALRAASAAAARRVGVQAVAPLGLCFLPAFVFL 177
Query: 314 IIGPAILSI 322
I P + +
Sbjct: 178 GIVPVVAGL 186
>gi|156975615|ref|YP_001446522.1| Flp pilus assembly protein TadB [Vibrio harveyi ATCC BAA-1116]
gi|156527209|gb|ABU72295.1| hypothetical protein VIBHAR_03348 [Vibrio harveyi ATCC BAA-1116]
Length = 301
Score = 66.4 bits (161), Expect = 6e-09, Method: Composition-based stats.
Identities = 33/195 (16%), Positives = 73/195 (37%), Gaps = 11/195 (5%)
Query: 121 LVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIK 180
++ I L + + Y+ L + +G G+ W+ N KR+ +
Sbjct: 74 IIFVFIVLSGYLSYYIIYELLNINSILISIGVFTFSVVWGYY----WLQN---KRRLDFE 126
Query: 181 RAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFE 240
+ +PDAL++L+ V +G S+ A V E++ G + E L N +
Sbjct: 127 KKFPDALNILMSAVTAGESLMHAFSFVGENMEG---EVGREFKEMGDRLKLGENAEKVLL 183
Query: 241 NFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV 300
T + + G + + L L+ R +E+++ A + +++
Sbjct: 184 RSCKAFPYPEYIFFTITIRANINRGGQLKNVLARLIRILVDARTLESKRMAMTSEARISA 243
Query: 301 PMIIFFLPVLILVII 315
++ P+ ++
Sbjct: 244 KVVAAI-PIAFAFMV 257
>gi|283778865|ref|YP_003369620.1| type II secretion system protein [Pirellula staleyi DSM 6068]
gi|283437318|gb|ADB15760.1| type II secretion system protein [Pirellula staleyi DSM 6068]
Length = 300
Score = 66.4 bits (161), Expect = 6e-09, Method: Composition-based stats.
Identities = 33/174 (18%), Positives = 67/174 (38%), Gaps = 5/174 (2%)
Query: 150 VGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAE 209
+ +G P V++S L R ++++ P AL + V SG ++ +A + V++
Sbjct: 96 LLGAAGGLILGITLPIVYLSVLRWWRVGTMQKQMPQALQAVADAVRSGQTLSEACQLVSK 155
Query: 210 DIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIG 269
+I G PL +E +L R + R A++ R G ++
Sbjct: 156 EIKG---PLGQEFAYAHQQLELGHAPVSVMNRMATRVPLTEFRVFATAVVVHRRAGGNLS 212
Query: 270 DSLRVLVSETRSERLMEAEKKAASLGPKLT-VPMII-FFLPVLILVIIGPAILS 321
+ R + + A + G +L+ M++ + V L + P +
Sbjct: 213 LLTERMSHSARDRQDVRNHLMAVTSGSRLSAFGMVLGGIIAVAFLTWLEPDYVR 266
>gi|229829728|ref|ZP_04455797.1| hypothetical protein GCWU000342_01825 [Shuttleworthia satelles DSM
14600]
gi|229791717|gb|EEP27831.1| hypothetical protein GCWU000342_01825 [Shuttleworthia satelles DSM
14600]
Length = 464
Score = 66.4 bits (161), Expect = 6e-09, Method: Composition-based stats.
Identities = 26/155 (16%), Positives = 66/155 (42%), Gaps = 8/155 (5%)
Query: 172 VQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVA------EDIGGQSVPLSEEMLLT 225
V++R+ + R +P + + + + +G+++ AL R++ G E + L
Sbjct: 307 VKRRRENADRDYPSIISEIALYLSAGVTVKNALERISAAYEERRKQGQTGHEGYEALSLL 366
Query: 226 IAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGT-SIGDSLRVLVSETRSERL 284
+ + + + A+E++ R + LIQ+ + G + +
Sbjct: 367 VRRMKEGISERQAYEDWPGLCPTASYRKLSMLLIQNLQRGNRRLAELFEEEKQRAEEAGR 426
Query: 285 MEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAI 319
+ +K +L +PM+ L V++++++ PA+
Sbjct: 427 LRCKKLGDEASTRLLIPMV-GLLAVVLMILLAPAL 460
>gi|116255774|ref|YP_771607.1| putative transmembrane pilus component protein [Rhizobium
leguminosarum bv. viciae 3841]
gi|115260422|emb|CAK03526.1| putative transmembrane pilus component protein [Rhizobium
leguminosarum bv. viciae 3841]
Length = 318
Score = 66.4 bits (161), Expect = 6e-09, Method: Composition-based stats.
Identities = 33/206 (16%), Positives = 69/206 (33%), Gaps = 5/206 (2%)
Query: 117 LVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQ 176
+ R VP +IL ++ + ++ V P I +Q+R
Sbjct: 81 VFGRDAVPPYTMILAYGITAIVVFIVISLIFGPIFGFVIAIPVAIFLPKGVIRYYLQRRW 140
Query: 177 SSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQ 236
I+ P A+D ++ V +G + A+ VA+ +P S E E
Sbjct: 141 LQIESQLPYAVDQIVSAVRTGKPLAIAVNAVAD---TGQMPASREFERIAREQKLGIGLV 197
Query: 237 VAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGP 296
A + + AL R G I + L + + ++ + +S
Sbjct: 198 EALDRHGRNVPSLHFKMVDAALGLFARQGGDISEPLTEMSKSFKEIWKLDQKITTSSSQA 257
Query: 297 KLTVPMIIF--FLPVLILVIIGPAIL 320
++ ++ +L++ P ++
Sbjct: 258 RMNFRVVNGGALFMILMIFFGQPELI 283
>gi|166033070|ref|ZP_02235899.1| hypothetical protein DORFOR_02792 [Dorea formicigenerans ATCC
27755]
gi|166027427|gb|EDR46184.1| hypothetical protein DORFOR_02792 [Dorea formicigenerans ATCC
27755]
Length = 230
Score = 66.1 bits (160), Expect = 6e-09, Method: Composition-based stats.
Identities = 25/212 (11%), Positives = 79/212 (37%), Gaps = 14/212 (6%)
Query: 121 LVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIK 180
+++ +I ++ G WI+ AVIL+ G + +++++
Sbjct: 1 MILKVIIIVTGTAWIYYRS----------WVAVILLIPAGVWYYIQLLDECIKRKEQEFL 50
Query: 181 RAWPDALDLLLICVESGISIDQALRRVAEDIG---GQSVPLSEEMLLTIAELSFLPNRQV 237
+ + + + +G S++ A++ +++ + E+ + + ++ +
Sbjct: 51 VQFKELIQTFSSLLNTGYSVENAVKESLKEMQIFYSDDAAILRELEIMVRQIRVQVPVEQ 110
Query: 238 AFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPK 297
A E RT++ V + + + R G ++ +R + + ++ E K
Sbjct: 111 AVEELSERTKLPDVESFAGVFVTAKRSGGNLMSIIRNTADQIGDKIDVKREIDTMLAAKK 170
Query: 298 LTVPMIIFFLPVLILVIIGPAILSIIDTMKDH 329
++ P I++ + + + + +
Sbjct: 171 YEFQVMSVI-PFGIVLYMTVSFPEFMGNLYGN 201
>gi|167589558|ref|ZP_02381946.1| type II secretion system protein [Burkholderia ubonensis Bu]
Length = 235
Score = 66.1 bits (160), Expect = 7e-09, Method: Composition-based stats.
Identities = 34/162 (20%), Positives = 70/162 (43%), Gaps = 6/162 (3%)
Query: 171 LVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELS 230
L+++ + A+PDA+DL++ V +GI + QA+ V + + P+ L
Sbjct: 50 LIRRFRLRFLEAFPDAIDLIVRAVRAGIPVTQAISTVGD---SAAEPVRSTFRTMGDSLR 106
Query: 231 FLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKK 290
+ + +R + T L+ G S+G++L L S RS R + + +
Sbjct: 107 VGADLKDVLTQAADRLMIADFSFFTVYLLLQRETGGSLGETLDELSSIIRSRRDIRLKSR 166
Query: 291 AASLGPKLT---VPMIIFFLPVLILVIIGPAILSIIDTMKDH 329
A + ++T + + F + + ++ P I+ + T H
Sbjct: 167 ALTAEGRITTNIISAVPFVMIGALFLVNRPYIMLLFTTHAGH 208
>gi|22127362|ref|NP_670785.1| hypothetical protein y3488 [Yersinia pestis KIM 10]
gi|21960447|gb|AAM87036.1|AE013952_3 hypothetical [Yersinia pestis KIM 10]
Length = 270
Score = 66.1 bits (160), Expect = 7e-09, Method: Composition-based stats.
Identities = 30/148 (20%), Positives = 63/148 (42%), Gaps = 4/148 (2%)
Query: 168 ISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIA 227
+ K K+ +P+ L ++ + SG SI+Q L R ++I G PL +E+ L
Sbjct: 84 LKYARSKHYLLFKQDFPEVLLMINMAASSGASINQVLERCGKEIRG---PLGQELGLICR 140
Query: 228 ELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEA 287
L+ + F + Y R ++ + + G + + + L ++ E
Sbjct: 141 RLNLGETPETVFYDAYERFHYPEFYFLVTIILLNIQQGGQLKELITRLSQIITKKKTTEQ 200
Query: 288 EKKAASLGPKLTVPMIIFFLPVLILVII 315
+K + +++V II +P+L ++
Sbjct: 201 KKAVMTAQIRMSV-NIISIMPMLFSFLL 227
>gi|55378047|ref|YP_135897.1| hypothetical protein rrnAC1249 [Haloarcula marismortui ATCC 43049]
gi|55230772|gb|AAV46191.1| unknown [Haloarcula marismortui ATCC 43049]
Length = 678
Score = 66.1 bits (160), Expect = 7e-09, Method: Composition-based stats.
Identities = 37/210 (17%), Positives = 87/210 (41%), Gaps = 8/210 (3%)
Query: 107 FRSEYSLNILLVVRLVVPIIFLILGIIWI-FGYDKLLEYPFQLRVGAVILIGYVGFCAPS 165
FR L + L V L + + + I W D ++ P + V + Y+ F P
Sbjct: 388 FRDHPLLVLWLTVPLSILAVVAAIVIGWAPLSLDGMIAVPVRSTFFWVYVPMYLNFI-PL 446
Query: 166 VWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLT 225
+ Q+ + +I + L L ++G+++ ++++ V+E S LS+E
Sbjct: 447 MIFYEWNQRSRKAIIGKLSENLRKLASANDTGMTLLESVKVVSE---TSSGKLSDEFETI 503
Query: 226 IAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLM 285
A++++ + + A F N+ + + + + ++ + I D L + ++ +
Sbjct: 504 HAKVNYGTSLKDALREFNNKYNVPRLARTVKLIAEAQEASSQIQDVLSTAAQASENQDDI 563
Query: 286 EAEKKAASLGPKLTVPMIIFFLPVLILVII 315
E E+ ++ +I+ L+ V+
Sbjct: 564 ERER---KSRTRMQTVIILMTYLTLLGVMA 590
>gi|300742222|ref|ZP_07072243.1| putative bacterial type II secretion system protein F domain
protein [Rothia dentocariosa M567]
gi|300381407|gb|EFJ77969.1| putative bacterial type II secretion system protein F domain
protein [Rothia dentocariosa M567]
Length = 474
Score = 66.1 bits (160), Expect = 7e-09, Method: Composition-based stats.
Identities = 30/141 (21%), Positives = 60/141 (42%), Gaps = 4/141 (2%)
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
L+LL + +G+ + AL+ + + + +S+ + L+ + Q A++
Sbjct: 336 MLELLAAQLRAGLGLTGALQALGRALAHEERAISDAIEHITLTLTVSADWQAAWDG---- 391
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
+R + L + GT LR + R E AE+ +A L L +P+ +
Sbjct: 392 YDHPLLRELARILAPAYSAGTPSSALLRHCAATYRLEERRAAERASAKLAVALVLPLGLC 451
Query: 306 FLPVLILVIIGPAILSIIDTM 326
LP I I P ++S++ +
Sbjct: 452 SLPAFICCGIIPIVISLLPGL 472
>gi|148556413|ref|YP_001263995.1| type II secretion system protein [Sphingomonas wittichii RW1]
gi|148501603|gb|ABQ69857.1| type II secretion system protein [Sphingomonas wittichii RW1]
Length = 302
Score = 66.1 bits (160), Expect = 7e-09, Method: Composition-based stats.
Identities = 31/193 (16%), Positives = 64/193 (33%), Gaps = 12/193 (6%)
Query: 125 IIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWP 184
++ + G + + LL + + I + ++ ++R + P
Sbjct: 77 LLLSVSGALALAVIGALLAFGTFAALVVAIALPAALLF----YLRRRARRRTEQLIEDLP 132
Query: 185 DALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYN 244
+D + + G S+ QAL R + S + + I + A +
Sbjct: 133 FFIDAVRQLIAVGNSLPQALARA---LPASSPAVHAYLGPAIRRIELGAPLGEALQQVAT 189
Query: 245 RTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASL----GPKLTV 300
R + + A+ + RYG + L + + R + E AA+ KL
Sbjct: 190 RLHLTEISMLASAIRVNIRYGGPLTHILSNIAALIRERGRVAREIAAATAEMRVSAKLLA 249
Query: 301 PMIIFFLPVLILV 313
M + L L+
Sbjct: 250 VMPL-ILAAFFLL 261
>gi|44004389|ref|NP_982057.1| hypothetical protein BCE_A0050 [Bacillus cereus ATCC 10987]
gi|42741455|gb|AAS44900.1| conserved hypothetical protein [Bacillus cereus ATCC 10987]
Length = 276
Score = 66.1 bits (160), Expect = 8e-09, Method: Composition-based stats.
Identities = 51/270 (18%), Positives = 107/270 (39%), Gaps = 28/270 (10%)
Query: 66 DSASSRLRTRDSKSLRNFVKKLNLKAILVD--ENIVNKLRAAGFRSEYSLNILLVVRLVV 123
++A + ++ + + L+ K + + E I KL AG + L +++
Sbjct: 24 ENAKRIEKKNLNQMMLAPFQSLSHKYLTEEKKEQIQKKLEEAGL--DTKPEEYLKMKVAY 81
Query: 124 PIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAW 183
PIIF + +I +D L +LI + + P + +++ + K
Sbjct: 82 PIIFTSVFLICTVFHDYYL-------FKVGVLISPLLYFYPDYLLKRRIKQAIEARKFEL 134
Query: 184 PDALDLLLICVESGISIDQ---ALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFE 240
P+ L +L +++ +++ A + L+ E+ E+ + F
Sbjct: 135 PEYLIPMLQLLKTHTTLEAVKKAQIYAGRHLRPYVSTLTAEL-----EMYAGSD--QPFR 187
Query: 241 NFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV 300
NF V T AL Q+ + T SLR++ ++ + R ++ E + K
Sbjct: 188 NFAAALNSPEVNTFTIALQQAQK--TDKVQSLRIMDAQIKMMRELKHENYNRLIQNK--- 242
Query: 301 PMII--FFLPVLILVIIGPAILSIIDTMKD 328
PM + F + V+ ++I P ++ I M+
Sbjct: 243 PMEMNKFNVAVIGCIVIYPMVIVIQSLMQG 272
>gi|153950598|ref|YP_001399591.1| type II secretion system protein F domain [Yersinia
pseudotuberculosis IP 31758]
gi|152962093|gb|ABS49554.1| type II secretion system protein F domain protein [Yersinia
pseudotuberculosis IP 31758]
Length = 291
Score = 66.1 bits (160), Expect = 8e-09, Method: Composition-based stats.
Identities = 30/159 (18%), Positives = 66/159 (41%), Gaps = 5/159 (3%)
Query: 168 ISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIA 227
+ K K+ +P+ L ++ + SG SI+Q L R ++I G PL +E+ L
Sbjct: 105 LKYARSKHYLLFKQDFPEVLLMINMAASSGASINQVLERCGKEIRG---PLGQELGLICR 161
Query: 228 ELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEA 287
L+ + F + Y R ++ + + G + + + L ++ E
Sbjct: 162 RLNLGETPETVFYDAYERFHYPEFYFLVTIILLNIQQGGQLKELITRLSQIITKKKTTEQ 221
Query: 288 EKKAASLGPKLTVPM--IIFFLPVLILVIIGPAILSIID 324
+K + +++V + I+ L +L ++ P + +
Sbjct: 222 KKAVMTAQIRMSVNIISIMPILFSFLLYLLDPTTIEFVW 260
>gi|328954942|ref|YP_004372275.1| Type II secretion system F domain protein [Coriobacterium glomerans
PW2]
gi|328455266|gb|AEB06460.1| Type II secretion system F domain protein [Coriobacterium glomerans
PW2]
Length = 221
Score = 66.1 bits (160), Expect = 8e-09, Method: Composition-based stats.
Identities = 25/132 (18%), Positives = 48/132 (36%), Gaps = 4/132 (3%)
Query: 182 AWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFL-PNRQVAFE 240
+ +D++ + + +G+S D AL ++ L+ M R+ A
Sbjct: 80 EVSEMIDIVRLGLSAGLSFDAALELFC---ANRATSLARRMAQASLAWRIGSATRETALA 136
Query: 241 NFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV 300
+ + A+ Q+ G + ++L E R+ E E+ KL +
Sbjct: 137 GAATDLGARSLESFAVAVSQALALGAPLTETLAGQSREIRAAHRAEVERDIERAPIKLLI 196
Query: 301 PMIIFFLPVLIL 312
P LP L+L
Sbjct: 197 PTSALILPALLL 208
>gi|269958190|ref|YP_003327978.1| type II secretion system protein [Xylanimonas cellulosilytica DSM
15894]
gi|269306871|gb|ACZ32420.1| type II secretion system protein [Xylanimonas cellulosilytica DSM
15894]
Length = 303
Score = 66.1 bits (160), Expect = 8e-09, Method: Composition-based stats.
Identities = 36/183 (19%), Positives = 70/183 (38%), Gaps = 6/183 (3%)
Query: 142 LEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISID 201
P + I + + P + + +K + RA DL+ + G
Sbjct: 123 FPLPVLIPTAGSIALAVGLWFLPDYNVRDDARKARVEFGRALGAYTDLVALERLGGSGTR 182
Query: 202 QALRRVAEDIGG-QSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQ 260
QA+ AE LSEE+ + S L A + + + + +
Sbjct: 183 QAMELAAEVGDNWVFRRLSEELAR--SRWSGLAPW-DAMHVLADELGLPELDDLADIMRL 239
Query: 261 SDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAIL 320
S G+ + LR RS L A K+ + G ++T+PM + + ++++I P++L
Sbjct: 240 SKE-GSQVYAQLRARSEGLRSAMLNAALGKSNAAGERMTIPMAL-LSIMFLVILITPSLL 297
Query: 321 SII 323
++
Sbjct: 298 RLM 300
>gi|209809174|ref|YP_002264712.1| bacterial type II secretion system protein F [Aliivibrio
salmonicida LFI1238]
gi|208010736|emb|CAQ81127.1| bacterial type II secretion system protein F [Aliivibrio
salmonicida LFI1238]
Length = 303
Score = 66.1 bits (160), Expect = 8e-09, Method: Composition-based stats.
Identities = 29/150 (19%), Positives = 58/150 (38%), Gaps = 7/150 (4%)
Query: 166 VWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLT 225
+W+ + R + ++PDAL++L V SG I A+ V + G+ + +E
Sbjct: 117 LWLGKREKNR---FEDSFPDALNMLSSAVSSGEGIMHAIIFVGASLDGK---VGKEFKRM 170
Query: 226 IAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLM 285
+L + F R + L S G + + +R L R +
Sbjct: 171 GEQLQLGESPDTVFRKSCARFPYPSFQFFIITLRTSMERGGQLKEIMRRLNRLMFGARSI 230
Query: 286 EAEKKAASLGPKLTVPMIIFFLPVLILVII 315
E +K A + + + ++ P + L ++
Sbjct: 231 EKKKYALTSEARTSAKIVASI-PFIFLFML 259
>gi|51891534|ref|YP_074225.1| hypothetical protein STH396 [Symbiobacterium thermophilum IAM
14863]
gi|51855223|dbj|BAD39381.1| conserved hypothetical protein [Symbiobacterium thermophilum IAM
14863]
Length = 273
Score = 66.1 bits (160), Expect = 8e-09, Method: Composition-based stats.
Identities = 54/267 (20%), Positives = 98/267 (36%), Gaps = 15/267 (5%)
Query: 62 SLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRL 121
++ + ++R +L IL + +L +G L +RL
Sbjct: 20 RGRQGGGEAPWPGPRWPAVRRLASRL--AGILASGRLARELAVSGLELTLEELALRKIRL 77
Query: 122 VVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKR 181
+ L F AP + ++ R+ +++R
Sbjct: 78 AGLA---------LACALLLALLGRPGLATLGFAGAVWAFQAPDLEVTRAAAARRRAVQR 128
Query: 182 AWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFEN 241
P L L + ESG+ + AL A + PL E+ +AE+ +A
Sbjct: 129 DLPYFLFTLAVLAESGMQLLPALDHYARNAAA---PLGREVRSALAEIRMGQPPGMALLE 185
Query: 242 FYNRTQMDCVRNATQALIQSDRYGT-SIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV 300
R + + A AL+Q+ GT + +LR +E R A++ A KL V
Sbjct: 186 MAQRLDVRDLTRAVGALVQTMEKGTEGLAAALRAQAAEAWDRRRRLAQEAGAQASVKLLV 245
Query: 301 PMIIFFLPVLILVIIGPAILSIIDTMK 327
P+++F LP ++ + GPAI + + +
Sbjct: 246 PLVLFVLPAVLAMAAGPAIYAFLTQLG 272
>gi|299532822|ref|ZP_07046209.1| type II secretion system protein [Comamonas testosteroni S44]
gi|298719046|gb|EFI60016.1| type II secretion system protein [Comamonas testosteroni S44]
Length = 327
Score = 66.1 bits (160), Expect = 8e-09, Method: Composition-based stats.
Identities = 37/204 (18%), Positives = 76/204 (37%), Gaps = 8/204 (3%)
Query: 108 RSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVW 167
R+ + + +L+ + I + L +I + A++++G F
Sbjct: 82 RTGWPVPAILLGTVGAGIFYGSLALIVAAFLIVGFAVGWLAGSAALVVLGIGFFFL---- 137
Query: 168 ISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIA 227
+ QK ++ + + P LD + V G S+ A + A PL M +
Sbjct: 138 LFTRAQKYRTRLTQQLPGFLDNTVRLVTIGNSVQAAFQMAAASTKD---PLQSVMEKAAS 194
Query: 228 ELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEA 287
+ + A + +T++D + L S RYG + L + + R E
Sbjct: 195 LARAGMDLENAVTHVARQTRLDELHLLAAILRISVRYGGRVDLLLERVANFMRDREQAEQ 254
Query: 288 EKKAASLGPKLTVPMIIFFLPVLI 311
+ A + +L+ ++ LPV +
Sbjct: 255 DLSAMTAETRLSA-WVLSLLPVAV 277
>gi|291459839|ref|ZP_06599229.1| putative bacterial type II secretion system protein F domain
protein [Oribacterium sp. oral taxon 078 str. F0262]
gi|291417629|gb|EFE91348.1| putative bacterial type II secretion system protein F domain
protein [Oribacterium sp. oral taxon 078 str. F0262]
Length = 285
Score = 66.1 bits (160), Expect = 8e-09, Method: Composition-based stats.
Identities = 36/208 (17%), Positives = 83/208 (39%), Gaps = 12/208 (5%)
Query: 119 VRLVVPIIFLILGIIWIFGYDKLLEYP--------FQLRVGAVILIGYVGFCAPSVWISN 170
+R + + L G+ +F ++ L+ V +++ G A S+
Sbjct: 37 LRTFLAALLLGGGVSLVFYGNQFLDSSGRPTGATATGNVVIFLVVGSIAGIFAQSIRSKM 96
Query: 171 LVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDI---GGQSVPLSEEMLLTIA 227
L +KR + + + L+ L + + SG++++ +L+ V +D+ + + +E I+
Sbjct: 97 LQKKRITELSIQFRGFLEALAVALSSGMNMNDSLQSVYKDLVLEYTRDSWIVKETEEMIS 156
Query: 228 ELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEA 287
+ + + R+ +RN S R G +I D +R + +
Sbjct: 157 GMRNNIPIEDMIRSLGERSDNRDIRNFATVFNVSYRAGGNIRDIVRRTADIIGEKIEISG 216
Query: 288 EKKAASLGPKLTVPMIIFFLPVLILVII 315
E A KL ++ PV +++++
Sbjct: 217 EIATAISSNKLQFNAMMVI-PVFLILML 243
>gi|225572861|ref|ZP_03781616.1| hypothetical protein RUMHYD_01052 [Blautia hydrogenotrophica DSM
10507]
gi|225039787|gb|EEG50033.1| hypothetical protein RUMHYD_01052 [Blautia hydrogenotrophica DSM
10507]
Length = 247
Score = 66.1 bits (160), Expect = 8e-09, Method: Composition-based stats.
Identities = 35/212 (16%), Positives = 80/212 (37%), Gaps = 19/212 (8%)
Query: 119 VRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSS 178
VR + L G+ W+F + + A + + + F + ++++Q
Sbjct: 16 VRYLAEATVLCAGVNWLFYQN----------IWAFLPLPAIVFIYFRLRKQQKIREQQRE 65
Query: 179 IKRAWPDALDLLLICVESGISIDQALRRVAEDIG---GQSVPLSEEMLLTIAELSFLPNR 235
+ + D LD L + +++G S++ A+ A ++ G+ L+ E+ +L
Sbjct: 66 LNYQFKDMLDSLNVTLQAGYSVENAISLCARELERLYGREADLTRELREMEDKLKLSVPV 125
Query: 236 QVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAA--- 292
+ F + +R+ + V N + R G + L + ++ E +A
Sbjct: 126 ERLFMDLGSRSHSEDVENFAVVFQTAKRSGGDMRKILEKSAQMLGDKIEVKKEIEAVLTA 185
Query: 293 -SLGPKLTVPMIIFFLPVLILVIIGPAILSII 323
+L M +L + + P L ++
Sbjct: 186 KKSEQRLMSVMPFGI--ILYMSLTSPGFLEVL 215
>gi|115358175|ref|YP_775313.1| type II secretion system protein [Burkholderia ambifaria AMMD]
gi|115283463|gb|ABI88979.1| type II secretion system protein [Burkholderia ambifaria AMMD]
Length = 325
Score = 66.1 bits (160), Expect = 8e-09, Method: Composition-based stats.
Identities = 45/260 (17%), Positives = 91/260 (35%), Gaps = 11/260 (4%)
Query: 62 SLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRL 121
+ + R+R R + + + + N R G + + VR
Sbjct: 27 DRARQAPEQRIRERMRRLAPSLAGREAGANATPGVALFNLPRRQGRVRAWLQRYVTRVRA 86
Query: 122 VVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWIS----NLVQKRQS 177
V + + I + +L +L + P + + LV++ +
Sbjct: 87 VGGERGMRIVIASAIVGEIAAIVAMKLVALPSVLHPLIYVGLPLLAMRTSYRALVERFRL 146
Query: 178 SIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQV 237
A+PDA+DL++ V +GI + QA+ V + + P+ L + +
Sbjct: 147 RFLEAFPDAIDLIVRAVRAGIPVTQAISTVGD---SAAEPVRSTFRTMGDSLRVGVDLKD 203
Query: 238 AFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKA----AS 293
+R + T L+ G S+G++L L S R+ R + + +A
Sbjct: 204 VLTQASDRLMIADFSFFTVYLLLQRETGGSLGETLDELSSIIRTRRDIRLKTRALTAEGR 263
Query: 294 LGPKLTVPMIIFFLPVLILV 313
+ K+ + + L LV
Sbjct: 264 ITTKIISAVPFVMIGALFLV 283
>gi|222530410|ref|YP_002574292.1| type II secretion system protein [Caldicellulosiruptor bescii DSM
6725]
gi|222457257|gb|ACM61519.1| type II secretion system protein [Caldicellulosiruptor bescii DSM
6725]
Length = 263
Score = 65.7 bits (159), Expect = 8e-09, Method: Composition-based stats.
Identities = 29/202 (14%), Positives = 79/202 (39%), Gaps = 5/202 (2%)
Query: 126 IFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFC--APSVWISNLVQKRQSSIKRAW 183
++ + I++ F L + R+ + + ++ P +S +K ++ K+
Sbjct: 59 VYDFISIVFTFFLISCLLFALYTRISILFGLIFLPSVTAMPIAVLSIRTKKFKNQFKQDL 118
Query: 184 PDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFY 243
D ++ ++ + G+ ++Q L ++E P E+ L + + + A
Sbjct: 119 LDTIETMIQGFKCGLVVEQVLEYISESQENLVTPFIREINLRLL---AGQSLKEASLKVS 175
Query: 244 NRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMI 303
+T + + I ++L +L E+ E E A L + T+ M+
Sbjct: 176 QKTLCSEFEKMCRIFNLRSVTISHISEALSMLAQNIYEEQKTEIETLADKLNVRFTLIML 235
Query: 304 IFFLPVLILVIIGPAILSIIDT 325
+ ++ ++++ P ++ +
Sbjct: 236 VGYVIPFLILVTYPLVMMMTKY 257
>gi|257053921|ref|YP_003131754.1| type II secretion system protein [Halorhabdus utahensis DSM 12940]
gi|256692684|gb|ACV13021.1| type II secretion system protein [Halorhabdus utahensis DSM 12940]
Length = 678
Score = 65.7 bits (159), Expect = 9e-09, Method: Composition-based stats.
Identities = 36/215 (16%), Positives = 81/215 (37%), Gaps = 22/215 (10%)
Query: 110 EYSLNILLVVRLVVPIIFLILGIIWIFG---YDKLLEYPFQLRVGAVILIGYVGFCAPSV 166
+ +L V + + ++ L+L ++ + D ++ P Q + + Y+ F P
Sbjct: 389 RDNPPYVLAVTIPITLVALVLAVLMGWAPTSLDGMIADPLQGTFFWLYVPAYINFI-PLA 447
Query: 167 WISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTI 226
+ + SI + L L E+G+++ ++L VA G+ L++E +
Sbjct: 448 IFHEWNVQYRHSIIGKLSENLRKLSSANETGMTLLESLNIVARTSSGR---LADEFSIMH 504
Query: 227 AELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLV------SETR 280
++ + N + A F N+ + + + + ++ I D L +
Sbjct: 505 RKVQYGTNLKQALREFNNKYHVPRLSRTVKLISEAQEASNQIQDVLSTAAQASENQDDID 564
Query: 281 SERLMEAEKKAASLGPKLTVPMIIFFLPVLILVII 315
+R ++ V +II L+ VI
Sbjct: 565 RDRKSR---------TRMQVVIIIMTFLTLLGVIA 590
Score = 37.6 bits (86), Expect = 3.0, Method: Composition-based stats.
Identities = 31/190 (16%), Positives = 65/190 (34%), Gaps = 8/190 (4%)
Query: 113 LNILLVVRLVVPIIFLILGIIW---IFGYDKLLEYPFQLRVGAVILI---GYVGFCAPSV 166
L LLV ++ + LG+ + + + L+ PF + V ++ VGF +
Sbjct: 78 LGYLLVATVLAGQVPSFLGLGFPKSVLPVIQALKLPFLMIVSGLLFGTIGFAVGFGSLVS 137
Query: 167 WISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTI 226
R+ I DA+ + G++ L +A +++E +
Sbjct: 138 IPYFRASARERQINVMLSDAVSFMYALSVGGLNQLDILEAIAA-ADDTYGEVAKEFQSIV 196
Query: 227 AELS-FLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLM 285
E + F + + A N +T D + ++ G + L ++
Sbjct: 197 LETTYFDTDYRTAIRNQAIQTPSDELSQFLTDMLSIVDSGGDMTSFLEDQKNKYMRTSKQ 256
Query: 286 EAEKKAASLG 295
E+ +L
Sbjct: 257 TQERMLETLE 266
>gi|33600814|ref|NP_888374.1| hypothetical protein BB1829 [Bordetella bronchiseptica RB50]
gi|33568414|emb|CAE32326.1| putative membrane protein [Bordetella bronchiseptica RB50]
Length = 308
Score = 65.7 bits (159), Expect = 1e-08, Method: Composition-based stats.
Identities = 35/266 (13%), Positives = 76/266 (28%), Gaps = 23/266 (8%)
Query: 53 EILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYS 112
R + +L R + + + + + L AG
Sbjct: 24 RQARDGARRQASEAFLERQLELRPGQPEASQAPAARRRLPISNGAWRQLLLRAGV---EP 80
Query: 113 LNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLV 172
L + + L ++ + +
Sbjct: 81 TPRFLAASVGAHVGVPALAWLFGGWISAAAALLLVALLWY-------------FHLWLKA 127
Query: 173 QKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFL 232
+R+ + P LD L+ + G S++ A + +G PL E + +++
Sbjct: 128 DRRRRRMVHQLPTFLDALVRLITIGNSVNAAFQ---NALGSVEQPLLEVLQRADSQVRSG 184
Query: 233 PNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAA 292
+ A + Q+ + + + + R+G L + + R E A
Sbjct: 185 KDLDAALHQVSRQYQLRELFLVSAVIALALRFGGRSDQVLERMAAFMRDLEQARDELTAL 244
Query: 293 SLGPKLTVPMIIFFLP---VLILVII 315
S +L+ I+ LP L ++I
Sbjct: 245 SAEVRLSA-WILALLPIGLALFIIIF 269
>gi|220913152|ref|YP_002488461.1| type II secretion system protein [Arthrobacter chlorophenolicus A6]
gi|219860030|gb|ACL40372.1| type II secretion system protein [Arthrobacter chlorophenolicus A6]
Length = 285
Score = 65.7 bits (159), Expect = 1e-08, Method: Composition-based stats.
Identities = 29/155 (18%), Positives = 57/155 (36%), Gaps = 4/155 (2%)
Query: 138 YDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESG 197
+ L+ Y + G P + +KR + +++ WPD +D L + +G
Sbjct: 64 FVVLVFYAVSRSWPIAVCFGLFAGWLPLTILRWRAKKRTALLRQLWPDVVDHLRSAIRAG 123
Query: 198 ISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQA 257
+ + +AL ++ + + P+ E A+ + + NR +A
Sbjct: 124 LPLPEALIQLGDKGPEELRPVFREFG---ADYRAGGQFDGSLDKLKNRLADPVADRIVEA 180
Query: 258 LIQSDRYGTS-IGDSLRVLVSETRSERLMEAEKKA 291
L + G S +G L L R +E +A
Sbjct: 181 LRLTREVGGSDLGKLLGTLAEFLRENARTRSELEA 215
>gi|153811266|ref|ZP_01963934.1| hypothetical protein RUMOBE_01658 [Ruminococcus obeum ATCC 29174]
gi|149832764|gb|EDM87848.1| hypothetical protein RUMOBE_01658 [Ruminococcus obeum ATCC 29174]
Length = 247
Score = 65.7 bits (159), Expect = 1e-08, Method: Composition-based stats.
Identities = 31/188 (16%), Positives = 76/188 (40%), Gaps = 7/188 (3%)
Query: 142 LEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISID 201
++Y F ++L V + L+++R+ + + DAL+ L + V++G S++
Sbjct: 29 MDYLFYQNWWLMLLTVPVTVLFMRLKKKGLIRERKRKLNYQFKDALNALSVAVQAGYSVE 88
Query: 202 QALRRVAEDIGGQSV---PLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQAL 258
A+ + D+ + +E +L + + +R+ ++ V N
Sbjct: 89 NAVAACSRDLERLYPKETDIVKEFHYIETQLRVSVPVEELLLSLGDRSGIEDVENFAAVF 148
Query: 259 IQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVII--- 315
+ R G + ++ + + ++ +L K MI+ +P I++ +
Sbjct: 149 YTAKRTGGDMNRIIQTSARMLGDKIDVR-KEIETTLAAKKAEQMIMSLMPAGIILYLKLT 207
Query: 316 GPAILSII 323
P LS++
Sbjct: 208 SPGFLSVL 215
>gi|302388992|ref|YP_003824813.1| Type II secretion system F domain protein [Thermosediminibacter
oceani DSM 16646]
gi|302199620|gb|ADL07190.1| Type II secretion system F domain protein [Thermosediminibacter
oceani DSM 16646]
Length = 274
Score = 65.7 bits (159), Expect = 1e-08, Method: Composition-based stats.
Identities = 45/274 (16%), Positives = 106/274 (38%), Gaps = 22/274 (8%)
Query: 54 ILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSL 113
+LR+ +I SL+K R SK + V++ + E I L+AAG +
Sbjct: 20 LLREYEIYSLKKRIYRIRSVHEISKLVGKTVRR------DILERINANLKAAGRPLGLTA 73
Query: 114 NILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQ 173
++ R + +I+++ + +++ ++G ++I +
Sbjct: 74 EAYILARA----GLFLFSLIYVYL--------THMEGIQAVMMLFLGLFGLDIYIHFAKK 121
Query: 174 KRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLP 233
+R + +R P+ +DL + + + ++ AE Q+ + + AE
Sbjct: 122 ERLEAFRREMPEIVDLFELGAAADVPLEDIFLITAE--SAQTKEVRNALTRLAAEYVMTR 179
Query: 234 NRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAAS 293
++ F N + AL+Q +R G ++ + L L S + + ++ +
Sbjct: 180 EKEGCLRRFCNEVNLPEANILAMALLQGERTGRTL-EILSTLSSSLFNTATAKIARQDKA 238
Query: 294 LGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
+ K+ F + ++ + + P +I +K
Sbjct: 239 MEYKVLAAT-FFLMASIVTLYMYPYFTNIQGGLK 271
>gi|218676253|ref|YP_002395072.1| putative Flp pilus assembly protein TadB [Vibrio splendidus LGP32]
gi|218324521|emb|CAV25998.1| putative Flp pilus assembly protein TadB [Vibrio splendidus LGP32]
Length = 304
Score = 65.7 bits (159), Expect = 1e-08, Method: Composition-based stats.
Identities = 38/199 (19%), Positives = 79/199 (39%), Gaps = 12/199 (6%)
Query: 117 LVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQ 176
+ ++L++ + +++ L + F + A ++ +V + S L Q++
Sbjct: 75 MSLKLIL-FASVTASVVYAVNEFFLRQDYFVCLLLAEPILFFVFY-------SKLKQRQM 126
Query: 177 SSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQ 236
+S K +PDAL++L + SG SI A V + + + +E L L +
Sbjct: 127 NSFKTNFPDALNILSGAISSGQSIIHAFEYVGKQLDN---DVGKEFKLMAERLLIGEDPD 183
Query: 237 VAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGP 296
E N + + G + D + + R +E +K A +
Sbjct: 184 DVLERSSNTFPYLEYFFFASTIRINLARGGQLKDVINKINRLMFDSRAVEKKKNALTSEA 243
Query: 297 KLTVPMIIFFLPVLILVII 315
+ + +I LPV+ L+I+
Sbjct: 244 RASAKIIAC-LPVIFLIIL 261
>gi|170704075|ref|ZP_02894707.1| type II secretion system protein [Burkholderia ambifaria IOP40-10]
gi|170131017|gb|EDS99712.1| type II secretion system protein [Burkholderia ambifaria IOP40-10]
Length = 325
Score = 65.7 bits (159), Expect = 1e-08, Method: Composition-based stats.
Identities = 46/260 (17%), Positives = 91/260 (35%), Gaps = 11/260 (4%)
Query: 62 SLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRL 121
+ + R+R R + + + + N R G + + VR
Sbjct: 27 DRARQAPEQRIRERMRRLAPSLAGREAGANATPGVALFNLPRRQGRMRAWLQRYVTRVRA 86
Query: 122 VVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWIS----NLVQKRQS 177
V + + I + +L IL + P + + LV++ +
Sbjct: 87 VGGERGMRIVIASAIVGEIAAIVAMKLVALPSILHPLIYVGLPLLAMRTSYRALVERFRL 146
Query: 178 SIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQV 237
A+PDA+DL++ V +GI + QA+ V + + P+ L + +
Sbjct: 147 RFLEAFPDAIDLIVRAVRAGIPVTQAISTVGD---SAAEPVRSTFRTMGDSLRVGVDLKD 203
Query: 238 AFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKA----AS 293
+R + T L+ G S+G++L L S R+ R + + +A
Sbjct: 204 VLTQASDRLMIADFSFFTVYLLLQRETGGSLGETLDELSSIIRTRRDIRLKTRALTAEGR 263
Query: 294 LGPKLTVPMIIFFLPVLILV 313
+ K+ + + L LV
Sbjct: 264 VTTKIISAVPFVMIGALFLV 283
>gi|284031223|ref|YP_003381154.1| type II secretion system protein [Kribbella flavida DSM 17836]
gi|283810516|gb|ADB32355.1| type II secretion system protein [Kribbella flavida DSM 17836]
Length = 306
Score = 65.3 bits (158), Expect = 1e-08, Method: Composition-based stats.
Identities = 34/225 (15%), Positives = 73/225 (32%), Gaps = 9/225 (4%)
Query: 107 FRSEYSLNILLVVRLVVPIIFLILGIIWIF------GYDKLLEYPFQLRVGAVILIGYVG 160
R + ++ ++ +F LG + L P +
Sbjct: 85 LRRDLAVMNQPFATMLATKVFFALGALIFIPLVLYGASVIGLPAPGATPAVVTLAAMAFA 144
Query: 161 FCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSE 220
F P + + ++R+ + LDL+ + + G + +AL + G ++
Sbjct: 145 FFLPDLALRQEAEERRRDFRHVVGSFLDLVAMNLAGGRGLPEALMTAST--IGDHWAMAR 202
Query: 221 EMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETR 280
A + ++ +R+ AL + G I SL + R
Sbjct: 203 IRQALANARLIGITPWDAMARLGDDLGVEELRDLASALALAGDEGAKIRASLLARAASLR 262
Query: 281 SERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDT 325
+ L + E KA + V ++ +L + PA +I+ +
Sbjct: 263 RKELADVEGKAGERSQSMLVAQLVMCA-AFMLFLGYPAGAAILGS 306
>gi|145596548|ref|YP_001160845.1| type II secretion system protein [Salinispora tropica CNB-440]
gi|145305885|gb|ABP56467.1| type II secretion system protein [Salinispora tropica CNB-440]
Length = 253
Score = 65.3 bits (158), Expect = 1e-08, Method: Composition-based stats.
Identities = 31/130 (23%), Positives = 58/130 (44%), Gaps = 6/130 (4%)
Query: 194 VESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRN 253
+ +G +D+++ VAE + G PL+E + L A+ +
Sbjct: 126 MRAGAPVDRSVLAVAEALDG---PLAERLARVGRLLRLGAEPAEAWSTLAA---VPGAER 179
Query: 254 ATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILV 313
A ++S G S+ +L L + R++R AE A G + +P+ + FLP IL
Sbjct: 180 LVGAALRSATSGASLAGALTRLADDLRADRTTAAEATAQRSGVLIVLPLGLCFLPAFILA 239
Query: 314 IIGPAILSII 323
+ P I++++
Sbjct: 240 GLVPVIVAVL 249
>gi|229073961|ref|ZP_04207037.1| hypothetical protein bcere0025_60470 [Bacillus cereus F65185]
gi|228709146|gb|EEL61244.1| hypothetical protein bcere0025_60470 [Bacillus cereus F65185]
Length = 288
Score = 65.3 bits (158), Expect = 1e-08, Method: Composition-based stats.
Identities = 59/317 (18%), Positives = 123/317 (38%), Gaps = 37/317 (11%)
Query: 16 VAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTR 75
++ AV +F ++Y + L S + + + ++A +
Sbjct: 1 MSTILAVVVFVVMYWIFSTFLQSKKDSG---------------SLLTNYVENAKRIEKKN 45
Query: 76 DSKSLRNFVKKLNLKAILVD--ENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGII 133
++ + + L+ K + + E I KL AG + L +++ PIIF + +I
Sbjct: 46 LNQMMLAPFQSLSHKYLTEEKKEQIQKKLEEAGL--DTKPEEYLKMKVAYPIIFTSVFLI 103
Query: 134 WIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLIC 193
+D L +LI + + P + +++ + K P+ L +L
Sbjct: 104 CTVFHDYYL-------FKVGVLISPLLYFYPDYLLKRRIKQAIEARKFELPEYLIPMLQL 156
Query: 194 VESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRN 253
+++ +++ + A+ G+ L + AEL F NF V
Sbjct: 157 LKTHTTLEA--VKKAQIYAGRH--LRPYVSTLTAELEMYAGSDQPFRNFAAALNSPEVNT 212
Query: 254 ATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMII--FFLPVLI 311
T AL Q+ + T SLR++ ++ + R ++ E + K PM + F + V+
Sbjct: 213 FTIALQQAQK--TDKVQSLRIMDAQIKMMRELKHENYNRLIQNK---PMEMNKFNVAVIG 267
Query: 312 LVIIGPAILSIIDTMKD 328
++I P ++ I M+
Sbjct: 268 CIVIYPMVIVIQSLMQG 284
>gi|146296451|ref|YP_001180222.1| type II secretion system protein [Caldicellulosiruptor
saccharolyticus DSM 8903]
gi|145410027|gb|ABP67031.1| type II secretion system protein [Caldicellulosiruptor
saccharolyticus DSM 8903]
Length = 265
Score = 65.3 bits (158), Expect = 1e-08, Method: Composition-based stats.
Identities = 29/201 (14%), Positives = 74/201 (36%), Gaps = 5/201 (2%)
Query: 125 IIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWP 184
I ++ I L + G ++L P ++ +K ++ K+
Sbjct: 64 FISVVFTFFLISCLLFALYAKISILFGLILLPSVTAM--PIAVLNIRTKKFKNQFKQDLL 121
Query: 185 DALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYN 244
D ++ ++ + G+ ++Q L +AE P +E+ L + + + A
Sbjct: 122 DTIETMIQGFKCGLVVEQILEYIAEAQNNLVTPFIKEINL---RIMAGQSLKDACREVSY 178
Query: 245 RTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMII 304
+T + + I ++L +L E+ E E A + T+ M++
Sbjct: 179 KTLSSDFEKMCRIFSLRSVTTSHITEALSILAQNIYEEQKTEIETLADKFNVRFTLIMLV 238
Query: 305 FFLPVLILVIIGPAILSIIDT 325
++ ++++ P ++ +
Sbjct: 239 GYVIPFLILVTYPLVMMMTKY 259
>gi|257388194|ref|YP_003177967.1| type II secretion system protein [Halomicrobium mukohataei DSM
12286]
gi|257170501|gb|ACV48260.1| type II secretion system protein [Halomicrobium mukohataei DSM
12286]
Length = 679
Score = 65.3 bits (158), Expect = 1e-08, Method: Composition-based stats.
Identities = 29/194 (14%), Positives = 85/194 (43%), Gaps = 7/194 (3%)
Query: 122 VVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKR 181
+V ++ +++ + D ++ P V + Y+ +++ V+ R +I
Sbjct: 405 IVALLLVVVFDLAPMSLDGMIARPVLGTFFWVYVPLYINLLPLAIFYEWNVRSR-KTIIG 463
Query: 182 AWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFEN 241
+ + L L ++G+++ ++++ V+ GG+ LSEE + A++++ + + A
Sbjct: 464 SLSENLRKLASANDTGMTLLESVQVVSTTSGGK---LSEEFEIMHAKVNYGTSLKDALRE 520
Query: 242 FYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVP 301
F N+ + + + + ++ + I + L ++ + ++ A ++ V
Sbjct: 521 FNNKYHVPRLARTVKLISEAQEASSQIQNVLST-AAQASENQDDIDRERIAR--TRMQVV 577
Query: 302 MIIFFLPVLILVII 315
+I+ L+ V+
Sbjct: 578 IILMTYLTLLGVMA 591
>gi|45442766|ref|NP_994305.1| hypothetical protein YP_3004 [Yersinia pestis biovar Microtus str.
91001]
gi|51597674|ref|YP_071865.1| integral membrane protein. [Yersinia pseudotuberculosis IP 32953]
gi|108809094|ref|YP_653010.1| hypothetical protein YPA_3103 [Yersinia pestis Antiqua]
gi|108810711|ref|YP_646478.1| hypothetical protein YPN_0546 [Yersinia pestis Nepal516]
gi|145597783|ref|YP_001161859.1| hypothetical protein YPDSF_0473 [Yersinia pestis Pestoides F]
gi|150260281|ref|ZP_01917009.1| putative type II secretion system integral membrane protein
[Yersinia pestis CA88-4125]
gi|162418856|ref|YP_001604879.1| type II secretion system protein F domain [Yersinia pestis Angola]
gi|165924990|ref|ZP_02220822.1| type II secretion system protein F domain protein [Yersinia pestis
biovar Orientalis str. F1991016]
gi|165939873|ref|ZP_02228412.1| type II secretion system protein F domain protein [Yersinia pestis
biovar Orientalis str. IP275]
gi|166008715|ref|ZP_02229613.1| type II secretion system protein F domain protein [Yersinia pestis
biovar Antiqua str. E1979001]
gi|166212189|ref|ZP_02238224.1| type II secretion system protein F domain protein [Yersinia pestis
biovar Antiqua str. B42003004]
gi|167399582|ref|ZP_02305106.1| type II secretion system protein F domain protein [Yersinia pestis
biovar Antiqua str. UG05-0454]
gi|167419108|ref|ZP_02310861.1| type II secretion system protein F domain protein [Yersinia pestis
biovar Orientalis str. MG05-1020]
gi|167425112|ref|ZP_02316865.1| type II secretion system protein F domain protein [Yersinia pestis
biovar Mediaevalis str. K1973002]
gi|167466379|ref|ZP_02331083.1| type II secretion system protein F domain protein [Yersinia pestis
FV-1]
gi|186896812|ref|YP_001873924.1| type II secretion system protein [Yersinia pseudotuberculosis
PB1/+]
gi|218927880|ref|YP_002345755.1| hypothetical protein YPO0689 [Yersinia pestis CO92]
gi|229837371|ref|ZP_04457534.1| Flp pilus assembly protein TadB [Yersinia pestis Pestoides A]
gi|229840583|ref|ZP_04460742.1| Flp pilus assembly protein TadB [Yersinia pestis biovar Orientalis
str. PEXU2]
gi|229842867|ref|ZP_04463019.1| Flp pilus assembly protein TadB [Yersinia pestis biovar Orientalis
str. India 195]
gi|229900908|ref|ZP_04516032.1| Flp pilus assembly protein TadB [Yersinia pestis Nepal516]
gi|294502755|ref|YP_003566817.1| hypothetical protein YPZ3_0645 [Yersinia pestis Z176003]
gi|45437632|gb|AAS63182.1| putative membrane protein [Yersinia pestis biovar Microtus str.
91001]
gi|51590956|emb|CAH22614.1| Putative integral membrane protein [Yersinia pseudotuberculosis IP
32953]
gi|108774359|gb|ABG16878.1| membrane protein [Yersinia pestis Nepal516]
gi|108781007|gb|ABG15065.1| putative membrane protein [Yersinia pestis Antiqua]
gi|115346491|emb|CAL19365.1| putative membrane protein [Yersinia pestis CO92]
gi|145209479|gb|ABP38886.1| membrane protein [Yersinia pestis Pestoides F]
gi|149289689|gb|EDM39766.1| putative type II secretion system integral membrane protein
[Yersinia pestis CA88-4125]
gi|162351671|gb|ABX85619.1| type II secretion system protein F domain protein [Yersinia pestis
Angola]
gi|165912184|gb|EDR30822.1| type II secretion system protein F domain protein [Yersinia pestis
biovar Orientalis str. IP275]
gi|165923190|gb|EDR40341.1| type II secretion system protein F domain protein [Yersinia pestis
biovar Orientalis str. F1991016]
gi|165992054|gb|EDR44355.1| type II secretion system protein F domain protein [Yersinia pestis
biovar Antiqua str. E1979001]
gi|166206935|gb|EDR51415.1| type II secretion system protein F domain protein [Yersinia pestis
biovar Antiqua str. B42003004]
gi|166963102|gb|EDR59123.1| type II secretion system protein F domain protein [Yersinia pestis
biovar Orientalis str. MG05-1020]
gi|167052086|gb|EDR63494.1| type II secretion system protein F domain protein [Yersinia pestis
biovar Antiqua str. UG05-0454]
gi|167055875|gb|EDR65656.1| type II secretion system protein F domain protein [Yersinia pestis
biovar Mediaevalis str. K1973002]
gi|186699838|gb|ACC90467.1| type II secretion system protein [Yersinia pseudotuberculosis
PB1/+]
gi|229682247|gb|EEO78339.1| Flp pilus assembly protein TadB [Yersinia pestis Nepal516]
gi|229690134|gb|EEO82191.1| Flp pilus assembly protein TadB [Yersinia pestis biovar Orientalis
str. India 195]
gi|229696949|gb|EEO86996.1| Flp pilus assembly protein TadB [Yersinia pestis biovar Orientalis
str. PEXU2]
gi|229705494|gb|EEO91504.1| Flp pilus assembly protein TadB [Yersinia pestis Pestoides A]
gi|262360787|gb|ACY57508.1| hypothetical protein YPD4_0599 [Yersinia pestis D106004]
gi|262364732|gb|ACY61289.1| hypothetical protein YPD8_0599 [Yersinia pestis D182038]
gi|294353214|gb|ADE63555.1| hypothetical protein YPZ3_0645 [Yersinia pestis Z176003]
gi|320016748|gb|ADW00320.1| Flp pilus assembly protein TadB [Yersinia pestis biovar Medievalis
str. Harbin 35]
Length = 291
Score = 65.3 bits (158), Expect = 1e-08, Method: Composition-based stats.
Identities = 30/148 (20%), Positives = 63/148 (42%), Gaps = 4/148 (2%)
Query: 168 ISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIA 227
+ K K+ +P+ L ++ + SG SI+Q L R ++I G PL +E+ L
Sbjct: 105 LKYARSKHYLLFKQDFPEVLLMINMAASSGASINQVLERCGKEIRG---PLGQELGLICR 161
Query: 228 ELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEA 287
L+ + F + Y R ++ + + G + + + L ++ E
Sbjct: 162 RLNLGETPETVFYDAYERFHYPEFYFLVTIILLNIQQGGQLKELITRLSQIITKKKTTEQ 221
Query: 288 EKKAASLGPKLTVPMIIFFLPVLILVII 315
+K + +++V II +P+L ++
Sbjct: 222 KKAVMTAQIRMSV-NIISIMPMLFSFLL 248
>gi|241667101|ref|YP_002985185.1| type II secretion system protein [Rhizobium leguminosarum bv.
trifolii WSM1325]
gi|240862558|gb|ACS60223.1| type II secretion system protein [Rhizobium leguminosarum bv.
trifolii WSM1325]
Length = 287
Score = 65.3 bits (158), Expect = 1e-08, Method: Composition-based stats.
Identities = 32/200 (16%), Positives = 68/200 (34%), Gaps = 7/200 (3%)
Query: 117 LVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQ 176
+ R VP +IL ++ + +++ V P I +Q+R
Sbjct: 50 VFGRDAVPPYTMILAYGITAIVVFIVISLIFGPIFGIVIAIPVAIFLPKGMIRYFLQRRW 109
Query: 177 SSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQ 236
I+ P A+D ++ V +G + A+ VA+ +P S E E
Sbjct: 110 LQIESQLPYAVDQIVSAVRTGKPLAIAVNAVAD---TGQMPASREFERIAREQKLGIGLV 166
Query: 237 VAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGP 296
A + + AL R G I + L + + ++ + +S
Sbjct: 167 EALDRHGRNVPSLHFKMVDAALGLFARQGGDISEPLTEMSKSFKEIWKLDQKITTSSSQA 226
Query: 297 KLTVPMI----IFFLPVLIL 312
++ ++ +F + ++
Sbjct: 227 RMNFRVVNGGALFMMLMIFF 246
>gi|70734196|ref|YP_257836.1| hypothetical protein PFL_0694 [Pseudomonas fluorescens Pf-5]
gi|68348495|gb|AAY96101.1| conserved hypothetical protein [Pseudomonas fluorescens Pf-5]
Length = 293
Score = 65.3 bits (158), Expect = 1e-08, Method: Composition-based stats.
Identities = 33/161 (20%), Positives = 64/161 (39%), Gaps = 7/161 (4%)
Query: 167 WISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTI 226
+I+ L Q+R + P LD + ++SG ++ A V I + PL M
Sbjct: 107 YIAWLYQRRLKRMIEQLPALLDHSVRSLKSGRTLADA---VLGAIEASNDPLKSAMGRIQ 163
Query: 227 AELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLME 286
+ N A +F + D +R L + RYG + + L L+ R
Sbjct: 164 RNVQLGVNLPDAVSDFAEFYEQDELRMFALGLKVNHRYGGNASELLENLIKLIREREQGA 223
Query: 287 AEKKAASLGPKLTVPMIIFFLPVLIL---VIIGPAILSIID 324
+ A + ++T ++ LP+L++ ++ P + +
Sbjct: 224 RQLSAMTGETRMTA-WVLGTLPLLLVGYFMLTNPGYMLGMW 263
>gi|229065597|ref|ZP_04200827.1| hypothetical protein bcere0026_56000 [Bacillus cereus AH603]
gi|228715666|gb|EEL67459.1| hypothetical protein bcere0026_56000 [Bacillus cereus AH603]
Length = 288
Score = 65.3 bits (158), Expect = 1e-08, Method: Composition-based stats.
Identities = 48/258 (18%), Positives = 99/258 (38%), Gaps = 23/258 (8%)
Query: 66 DSASSRLRTRDSKSLRNFVKKLNLKAILVD--ENIVNKLRAAGFRSEYSLNILLVVRLVV 123
++A + ++ + + L+ K + + E I KL AGF + L +++
Sbjct: 36 ENAKRIEKKNLNQMMLAPFQSLSHKYLTEEKKEQIQKKLEEAGF--DTKPEEYLKMKVAY 93
Query: 124 PIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAW 183
P+IF + +I +D L +LI + + P + +++ + K
Sbjct: 94 PVIFTSVFLICTVFHDYYL-------FKVGVLISPLLYFYPDYLLKRKIKQAIEARKFEL 146
Query: 184 PDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFY 243
P+ L LL +++ +++ + AE G+ L + AEL F NF
Sbjct: 147 PEYLIPLLQLLKTHTTLEA--VKKAEIYAGRH--LRSYVSTLTAELEMYAGSDQPFRNFA 202
Query: 244 NRTQMDCVRNATQALIQSDRYGTSIGDSLRV---LVSETRSERLMEAEKKAASLGPKL-- 298
V T AL Q+ + T SLR+ + R + + + ++
Sbjct: 203 ASLNSPEVNTFTIALQQAQK--TDKVQSLRIMDAQIKMMRELKHENYNRLIQNKPMEMNK 260
Query: 299 -TVPMIIFFLPVLILVII 315
V +I + ++++I
Sbjct: 261 FNVAVIGCIVIYPMVIVI 278
>gi|119714631|ref|YP_921596.1| type II secretion system protein [Nocardioides sp. JS614]
gi|119535292|gb|ABL79909.1| type II secretion system protein [Nocardioides sp. JS614]
Length = 240
Score = 65.3 bits (158), Expect = 1e-08, Method: Composition-based stats.
Identities = 23/145 (15%), Positives = 58/145 (40%), Gaps = 6/145 (4%)
Query: 182 AWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFEN 241
P +DL + G + + V + G P ++ + A L+ + +
Sbjct: 100 DLPHVVDLFAATLRGGAAPADGIALVCTALPG---PAADRLAGVAARLALGLDPGQVWSA 156
Query: 242 FYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVP 301
+ + L ++ G + ++ L + E E++A ++G K +P
Sbjct: 157 LA---DDPHLGRLGRTLARAHSSGAPVVAAVERLADDLARSARAETEERARAVGVKAALP 213
Query: 302 MIIFFLPVLILVIIGPAILSIIDTM 326
+ + LP +L+ I P +++++ ++
Sbjct: 214 LGLCLLPAFVLIGIVPLVVALLASL 238
>gi|258620799|ref|ZP_05715834.1| Flp pilus assembly protein TadB [Vibrio mimicus VM573]
gi|258586997|gb|EEW11711.1| Flp pilus assembly protein TadB [Vibrio mimicus VM573]
Length = 303
Score = 65.3 bits (158), Expect = 1e-08, Method: Composition-based stats.
Identities = 33/195 (16%), Positives = 69/195 (35%), Gaps = 10/195 (5%)
Query: 121 LVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIK 180
L + + FLI I F D L+ + + + + +V F L + + +
Sbjct: 76 LKLLMFFLISAIAVYFINDFFLQQTYWKVLLFLQPLLFVVFII------KLRAHKTAKFQ 129
Query: 181 RAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFE 240
+PDAL++L + +G SI A V + + + E L +
Sbjct: 130 SNFPDALNILSGALSAGQSIVHAFEYVGKQLDN---DVGYEFKFMAERLLIGEDPDEVLA 186
Query: 241 NFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV 300
+ + G + + + + R ++ +K A + + +
Sbjct: 187 RSAASFPYVEYFFFASTIRINLSRGGQLKEVINRINRIMFDARAVDKKKNALTSEARSSA 246
Query: 301 PMIIFFLPVLILVII 315
+I LPV+ L+I+
Sbjct: 247 KIIA-ALPVIFLLIL 260
>gi|326943572|gb|AEA19465.1| hypothetical protein CT43_P281123 [Bacillus thuringiensis serovar
chinensis CT-43]
Length = 288
Score = 65.3 bits (158), Expect = 1e-08, Method: Composition-based stats.
Identities = 54/267 (20%), Positives = 108/267 (40%), Gaps = 22/267 (8%)
Query: 66 DSASSRLRTRDSKSLRNFVKKLNLKAILVD--ENIVNKLRAAGFRSEYSLNILLVVRLVV 123
++A + ++ + + L+ K + + E I KL AG + L +++
Sbjct: 36 ENAKRIEKKNLNQMMLAPFQSLSHKYLTEEKKEQIQKKLEEAGL--DTKPEEYLKMKVAY 93
Query: 124 PIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAW 183
PIIF + +I +D L +LI + + P + +++ + K
Sbjct: 94 PIIFTSVFLICTVFHDYYL-------FKVGVLISPLLYFYPDYLLKRRIKQAIEARKFEL 146
Query: 184 PDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFY 243
P+ L +L +++ +++ + AE G+ L + AEL F NF
Sbjct: 147 PEYLIPMLQLLKTHTTLEA--VKKAEIYAGRH--LRPYVSTLTAELEMYAGSDQPFRNFA 202
Query: 244 NRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMI 303
V T AL Q+ + T SLR++ ++ + R ++ E + K PM
Sbjct: 203 AALNSPEVNTFTIALQQAQK--TDKVQSLRIMDAQIKMMRELKHENYNRLIQNK---PME 257
Query: 304 I--FFLPVLILVIIGPAILSIIDTMKD 328
+ F + V+ ++I P ++ I M+
Sbjct: 258 MNKFNVAVIGCIVIYPMVIVIQSLMQG 284
>gi|228912547|ref|ZP_04076212.1| hypothetical protein bthur0013_66060 [Bacillus thuringiensis IBL
200]
gi|228847117|gb|EEM92106.1| hypothetical protein bthur0013_66060 [Bacillus thuringiensis IBL
200]
Length = 288
Score = 65.3 bits (158), Expect = 1e-08, Method: Composition-based stats.
Identities = 59/320 (18%), Positives = 121/320 (37%), Gaps = 43/320 (13%)
Query: 16 VAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTR 75
+A AV +F ++Y V L S + + + ++A +
Sbjct: 1 MATILAVVVFIVMYWVFSTFLQSKKDSG---------------SLLTNYVENAKRIEKKN 45
Query: 76 DSKSLRNFVKKLNLKAILVD--ENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGII 133
+ + + L+ K + + E I KL AG + L +++ PIIF + +I
Sbjct: 46 LNGMMLAPFQSLSHKYLTEEKKEQIQKKLEEAGL--DTKPEEYLKMKVAYPIIFTSVFLI 103
Query: 134 WIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLIC 193
+D L +LI + + P + +++ + K P+ L +L
Sbjct: 104 CTVFHDYYL-------FKVGVLISPLLYFYPDYLLKRRIKQAIEARKFELPEYLIPMLQL 156
Query: 194 VESGISIDQ---ALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDC 250
+++ +++ A + L+ E+ E+ + F NF
Sbjct: 157 LKTHTTLEAVKKAQIYAGRHLHPYVSTLTAEL-----EMYAGSD--QPFRNFAAALNSPE 209
Query: 251 VRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMII--FFLP 308
V T AL Q+ + T SLR++ ++ + R ++ E + K PM + F +
Sbjct: 210 VNTFTIALQQAQK--TDKVQSLRIMDAQIKMMRELKHENYNRLIQNK---PMEMNKFNVA 264
Query: 309 VLILVIIGPAILSIIDTMKD 328
V+ ++I P ++ I M+
Sbjct: 265 VIGCIVIYPMVIVIQSLMQG 284
>gi|229020883|ref|ZP_04177582.1| hypothetical protein bcere0030_53420 [Bacillus cereus AH1273]
gi|229027757|ref|ZP_04183938.1| hypothetical protein bcere0029_59420 [Bacillus cereus AH1272]
gi|229035195|ref|ZP_04189131.1| hypothetical protein bcere0028_52130 [Bacillus cereus AH1271]
gi|228728087|gb|EEL79127.1| hypothetical protein bcere0028_52130 [Bacillus cereus AH1271]
gi|228733549|gb|EEL84352.1| hypothetical protein bcere0029_59420 [Bacillus cereus AH1272]
gi|228740415|gb|EEL90714.1| hypothetical protein bcere0030_53420 [Bacillus cereus AH1273]
Length = 288
Score = 65.3 bits (158), Expect = 1e-08, Method: Composition-based stats.
Identities = 60/317 (18%), Positives = 123/317 (38%), Gaps = 37/317 (11%)
Query: 16 VAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTR 75
+A A+ +F ++Y V L S + + + ++A +
Sbjct: 1 MATILALVVFVVMYWVFSTFLQSKKDSG---------------SLLTNYVENAKRIEKKN 45
Query: 76 DSKSLRNFVKKLNLKAILVD--ENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGII 133
++ + + L+ K + + E I KL AG + L +++ PIIF + +I
Sbjct: 46 LNQMMLAPFQSLSHKYLTEEKKEQIQKKLEEAGL--DTKPEEYLKMKVAYPIIFTSVFLI 103
Query: 134 WIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLIC 193
+D L +LI + + P + +++ + K P+ L +L
Sbjct: 104 CTVFHDYYL-------FKVGVLISPLLYFYPDYLLKRRIKQAIEARKFELPEYLIPMLQL 156
Query: 194 VESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRN 253
+++ +++ + A+ G+ L + AEL F NF V
Sbjct: 157 LKTHTTLEA--VKKAQIYAGRH--LRPYVSTLTAELEMYAGSDQPFRNFAAALNSPEVNT 212
Query: 254 ATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMII--FFLPVLI 311
T AL Q+ + T SLR++ ++ + R ++ E + K PM + F + V+
Sbjct: 213 FTIALQQAQK--TDKVQSLRIMDAQIKMMRELKHENYNRLIQNK---PMEMNKFNVAVIG 267
Query: 312 LVIIGPAILSIIDTMKD 328
++I P ++ I M+
Sbjct: 268 CIVIYPMVIVIQSLMQG 284
>gi|110833083|ref|YP_691942.1| hypothetical protein ABO_0222 [Alcanivorax borkumensis SK2]
gi|110646194|emb|CAL15670.1| conserved hypothetical protein [Alcanivorax borkumensis SK2]
Length = 268
Score = 65.3 bits (158), Expect = 1e-08, Method: Composition-based stats.
Identities = 38/199 (19%), Positives = 84/199 (42%), Gaps = 8/199 (4%)
Query: 130 LGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDL 189
+ + + L + + VIL+ + + QKR+ I + P+ +D
Sbjct: 42 IAVGLLLFLALLAIIQAFVGLMFVILLLVSAILFAVFYWNYRYQKRRRLIFESTPEVIDD 101
Query: 190 LLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMD 249
++ +++G S++QAL D PL + + + + ++F ++
Sbjct: 102 VIRGIDAGRSLEQALVNALNDAPKVFFPL---LFRLRSAVESGRDYTGLIDDFSKLYRIP 158
Query: 250 CVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPV 309
+ AL S YG+++ L+ + RS++ M E AA+ + T M LP
Sbjct: 159 PLTFVAVALRTSSHYGSAVRPVLKKVSRSLRSQQEMRREFLAATAETRFTA-MAFAVLP- 216
Query: 310 LILVIIGPAILSIIDTMKD 328
++IG +++ + ++ +D
Sbjct: 217 ---LVIGASLIGLNESFRD 232
>gi|116671912|ref|YP_832845.1| type II secretion system protein [Arthrobacter sp. FB24]
gi|116612021|gb|ABK04745.1| type II secretion system protein [Arthrobacter sp. FB24]
Length = 204
Score = 65.3 bits (158), Expect = 1e-08, Method: Composition-based stats.
Identities = 37/155 (23%), Positives = 68/155 (43%), Gaps = 5/155 (3%)
Query: 171 LVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELS 230
R R L+L+ +++G I +AL VA+ S + ++ L+
Sbjct: 53 RQALRAGEGLRDTAMMLELIGAMLDAGSGIGRALELVAD---SASPEYRHSLRPVVSALA 109
Query: 231 FLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKK 290
+ + A+ + RT + QAL + G L + R ER AEK+
Sbjct: 110 IGADWETAWRSSEVRT--PELLVLRQALGFAALTGAPSSAILYAQAARLRRERFRAAEKR 167
Query: 291 AASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDT 325
AA+LG +L VP+ + LP + + + P +L+++ +
Sbjct: 168 AAALGVRLVVPLGLCSLPAFVCLGVVPVLLAMLPS 202
>gi|262164952|ref|ZP_06032690.1| flp pilus assembly protein TadB [Vibrio mimicus VM223]
gi|262027332|gb|EEY45999.1| flp pilus assembly protein TadB [Vibrio mimicus VM223]
Length = 303
Score = 65.3 bits (158), Expect = 1e-08, Method: Composition-based stats.
Identities = 33/195 (16%), Positives = 69/195 (35%), Gaps = 10/195 (5%)
Query: 121 LVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIK 180
L + + FLI I F D L+ + + + + +V F L + + +
Sbjct: 76 LKLLMFFLISAIAVYFINDFFLQQTYWKVLLFLQPLLFVVFIV------KLRAHKTAKFQ 129
Query: 181 RAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFE 240
+PDAL++L + +G SI A V + + + E L +
Sbjct: 130 SNFPDALNILSGALSAGQSIVHAFEYVGKQLDN---DVGYEFKFMAERLLIGEDPDEVLA 186
Query: 241 NFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV 300
+ + G + + + + R ++ +K A + + +
Sbjct: 187 RSAASFPYVEYFFFASTIRINLSRGGQLKEVINRINRIMFDARAVDKKKNALTSEARSSA 246
Query: 301 PMIIFFLPVLILVII 315
+I LPV+ L+I+
Sbjct: 247 KIIA-ALPVIFLLIL 260
>gi|170724974|ref|YP_001759000.1| type II secretion system protein [Shewanella woodyi ATCC 51908]
gi|169810321|gb|ACA84905.1| type II secretion system protein [Shewanella woodyi ATCC 51908]
Length = 302
Score = 65.3 bits (158), Expect = 1e-08, Method: Composition-based stats.
Identities = 31/162 (19%), Positives = 67/162 (41%), Gaps = 7/162 (4%)
Query: 154 ILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGG 213
I + +GF + L++KR+++ +PDAL++++ V SG SI QA+ V + +
Sbjct: 105 IALPVLGFF---WGWNYLMRKRKNAFDETFPDALNIMMSAVSSGESIMQAIAYVGQSLDN 161
Query: 214 QSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLR 273
Q + E L + F+ R + + G + +
Sbjct: 162 Q---IGLEFRDMGERLKLGEPPEQVFKRACKRFPYPTFLFFIVTIRANMSRGGQLKSVMA 218
Query: 274 VLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVII 315
L+ R ++ +K A + +L+ ++ LP ++++
Sbjct: 219 RLIRVLMDARTLDKKKAAMTSEARLSAKIVAS-LPFFFMILL 259
>gi|218848410|ref|YP_002454972.1| hypothetical protein BCAH820_B0088 [Bacillus cereus AH820]
gi|218540461|gb|ACK92857.1| conserved hypothetical protein [Bacillus cereus AH820]
Length = 300
Score = 65.3 bits (158), Expect = 1e-08, Method: Composition-based stats.
Identities = 60/317 (18%), Positives = 123/317 (38%), Gaps = 37/317 (11%)
Query: 16 VAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTR 75
VA A+ +F ++Y V L S + + + ++A +
Sbjct: 13 VATILALVVFVVMYWVFSTFLQSKKDSG---------------SLLTNYVENAKRIEKKN 57
Query: 76 DSKSLRNFVKKLNLKAILVDEN--IVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGII 133
++ + + L+ K + ++ I KL AG + L +++ PIIF + +I
Sbjct: 58 LNQMMLAPFQSLSHKYLTEEKKELIQKKLEEAGL--DTKPEEYLKMKVAYPIIFTSVFLI 115
Query: 134 WIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLIC 193
+D L +LI + + P + +++ + K P+ L +L
Sbjct: 116 CTVFHDYYL-------FKVGVLISPLLYFYPDYLLKRRIKQAIEARKFELPEYLIPMLQL 168
Query: 194 VESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRN 253
+++ +++ + A+ G+ L + AEL F NF V
Sbjct: 169 LKTHTTLEA--VKKAQIYAGRH--LRPYVSTLTAELEMYAGSDQPFRNFAAALNSPEVNT 224
Query: 254 ATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMII--FFLPVLI 311
T AL Q+ + T SLR++ ++ + R ++ E + K PM + F + V+
Sbjct: 225 FTIALQQAQK--TDKVQSLRIMDAQIKMMRELKHENYNRLIQNK---PMEMNKFNVAVIG 279
Query: 312 LVIIGPAILSIIDTMKD 328
++I P ++ I M+
Sbjct: 280 CIVIYPMVIVIQSLMQG 296
>gi|254381325|ref|ZP_04996690.1| integral membrane protein [Streptomyces sp. Mg1]
gi|194340235|gb|EDX21201.1| integral membrane protein [Streptomyces sp. Mg1]
Length = 293
Score = 64.9 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 38/214 (17%), Positives = 90/214 (42%), Gaps = 4/214 (1%)
Query: 112 SLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNL 171
+ L+ ++ + + L+L + L + + ++ + + AP + + +
Sbjct: 84 TPARFLLTKVALAVGGLLLPPLSTIPLLLLGLPLYLPAIVGILAATVL-WFAPDLALRDK 142
Query: 172 VQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSF 231
++ ++ A LDL+ + +S +QA+ + A+ +G L + L + +
Sbjct: 143 AKRARAEFAHAMAAYLDLVALRRAGNVSAEQAMEQAAQ-VGRGWAFLRIQTALARSRVDK 201
Query: 232 LPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKA 291
+P+ + + + + + + QS G S+ +LR R+E L A
Sbjct: 202 VPHWE-SLTRLTAELDLPVLDDLAAIMRQSADDGASVYATLRSRAKNLRTELLAAQAADA 260
Query: 292 ASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDT 325
S K+T P +++L+I PAI+ +++T
Sbjct: 261 NSDSEKMTAP-GALLAVLVMLLIAFPAIIRMLNT 293
>gi|119714031|ref|YP_919173.1| integral membrane protein [Nocardioides sp. JS614]
gi|119525940|gb|ABL79310.1| integral membrane protein [Nocardioides sp. JS614]
Length = 302
Score = 64.9 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 47/243 (19%), Positives = 85/243 (34%), Gaps = 11/243 (4%)
Query: 77 SKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLN---ILLVVRLVVPIIFLILGII 133
++ F ++L + + L G E L + ++ L+ P+ ++LG
Sbjct: 60 KRAAEWFAEQLRTRRPDDMQTYERDLAVTGQPMEEWLAKLLVWFLIGLLGPVALVLLGNA 119
Query: 134 WIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLIC 193
G L+ L V ++G V + KR+ + A D LDL+++
Sbjct: 120 AGLGIPILVAPALGLVSAVVAVLGEV------RQLRETAGKRREELCDALSDFLDLVVMS 173
Query: 194 VESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRN 253
+E G S AL VA+ G A R + + +
Sbjct: 174 MEGGRSHADALPTVAQ--IGTGWAFHTIYDAIDNARPNGMTPWEALGEVGERFGVVELLD 231
Query: 254 ATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILV 313
+L + GTSI ++L R RL +A +A + +++ L V
Sbjct: 232 LRASLNLAQDEGTSIRNTLIARAQSMRDARLADAHARANKSTDAMRNNLMVMALVAAAYV 291
Query: 314 IIG 316
I+
Sbjct: 292 ILA 294
>gi|289706420|ref|ZP_06502778.1| type II secretion system F domain protein [Micrococcus luteus SK58]
gi|289556915|gb|EFD50248.1| type II secretion system F domain protein [Micrococcus luteus SK58]
Length = 285
Score = 64.9 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 33/205 (16%), Positives = 72/205 (35%), Gaps = 17/205 (8%)
Query: 88 NLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQ 147
+A D + + +G + ++ + + L++G+I +
Sbjct: 27 RPEAARTDSRLRVLIAQSGIQRLSPAGVVSA----MAVGGLVVGLIVL---------SLT 73
Query: 148 LRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRV 207
G P + +S ++R ++++ WPDA+D + +G+++ +AL ++
Sbjct: 74 GTWTIAACFAVFGAAVPWLLLSWQARRRSTALRELWPDAIDHARSAIRAGLTLPEALIQL 133
Query: 208 AEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTS 267
E L E + A + R +L + G +
Sbjct: 134 GE---TGPEGLREPFQHFARDYRAGARFVDALDRLKARMADPVADRLVVSLRLTREVGGA 190
Query: 268 -IGDSLRVLVSETRSERLMEAEKKA 291
IG L+ L R + + AE +A
Sbjct: 191 DIGRLLQTLSEFLRQDARIRAELEA 215
>gi|47568977|ref|ZP_00239668.1| conserved hypothetical protein protein [Bacillus cereus G9241]
gi|47554361|gb|EAL12721.1| conserved hypothetical protein protein [Bacillus cereus G9241]
Length = 276
Score = 64.9 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 49/270 (18%), Positives = 107/270 (39%), Gaps = 28/270 (10%)
Query: 66 DSASSRLRTRDSKSLRNFVKKLNLKAILVD--ENIVNKLRAAGFRSEYSLNILLVVRLVV 123
++A + ++ + + L+ K + + E I KL AG + L +++
Sbjct: 24 ENAKRIEKKNLNQMMLAPFQSLSHKYLTEEKKEQIQKKLEEAGL--DTKPEEYLKMKVAY 81
Query: 124 PIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAW 183
P+IF + +I +D L +LI + + P + +++ + K
Sbjct: 82 PVIFTSVFLICTVFHDYYL-------FKVGVLISPLLYFYPDYLLKKRIKQAIEARKFEL 134
Query: 184 PDALDLLLICVESGISIDQ---ALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFE 240
P+ L +L +++ +++ A + L+ E+ E+ + F
Sbjct: 135 PEYLIPMLQLLKTHTTLEAVKKAQIYAGRHLRPYVSTLTAEL-----EMYAGSD--QPFR 187
Query: 241 NFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV 300
NF V T AL Q+ + T SLR++ ++ + R ++ E + K
Sbjct: 188 NFAAALNSPEVNTFTIALQQAQK--TDKVQSLRIMDAQIKMMRELKHENYNRLIQNK--- 242
Query: 301 PMII--FFLPVLILVIIGPAILSIIDTMKD 328
PM + F + V+ +++ P ++ I M+
Sbjct: 243 PMEMNKFNVAVIGCIVMYPMVIVIQSLMQG 272
>gi|313835132|gb|EFS72846.1| type II secretion system F domain protein [Propionibacterium acnes
HL037PA2]
gi|314929110|gb|EFS92941.1| type II secretion system F domain protein [Propionibacterium acnes
HL044PA1]
gi|314970945|gb|EFT15043.1| type II secretion system F domain protein [Propionibacterium acnes
HL037PA3]
gi|328905820|gb|EGG25596.1| LOW QUALITY PROTEIN: type II secretion system F domain protein
[Propionibacterium sp. P08]
Length = 300
Score = 64.9 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 38/212 (17%), Positives = 83/212 (39%), Gaps = 7/212 (3%)
Query: 111 YSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISN 170
+ L+ + V+ + +++ + + VG +++ G+ P I +
Sbjct: 88 RTPGDLVAEKAVMALGGMLVPALARVVAAICGDTLPVTPVGLAVVLAVAGWFIPDTRIRS 147
Query: 171 LVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELS 230
L + + A +DL+ + + S +AL A+ L+ + T E S
Sbjct: 148 LSKAVRQDAAEAVLVYVDLVTLARLANQSAPRALVEAAQ--ISDHPVLAR--IRTTLERS 203
Query: 231 FLPNRQ--VAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAE 288
L + + + + + L D+ G S+ +LR V+E R L +
Sbjct: 204 RLEQQSPWAGLDGLSEELGLPELAELVEVLRLDDQ-GASLAGALRARVNEMRDAHLNREK 262
Query: 289 KKAASLGPKLTVPMIIFFLPVLILVIIGPAIL 320
+A + LT+ M+I L + +++I P ++
Sbjct: 263 VEAQTTSESLTIWMVIPVLVLGLVLITPPLLI 294
>gi|221197784|ref|ZP_03570830.1| type II secretion system protein [Burkholderia multivorans CGD2M]
gi|221204658|ref|ZP_03577675.1| type II secretion system protein [Burkholderia multivorans CGD2]
gi|221175515|gb|EEE07945.1| type II secretion system protein [Burkholderia multivorans CGD2]
gi|221181716|gb|EEE14117.1| type II secretion system protein [Burkholderia multivorans CGD2M]
Length = 337
Score = 64.9 bits (157), Expect = 2e-08, Method: Composition-based stats.
Identities = 33/177 (18%), Positives = 60/177 (33%), Gaps = 5/177 (2%)
Query: 151 GAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAED 210
A + G VW+++ +Q+R+ I R P LD ++ V G S+ A +
Sbjct: 135 LACLAALACGISVFGVWLASRIQRRRLKIVRQIPSFLDGIVRLVTLGNSVPAAFQAA--- 191
Query: 211 IGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGD 270
+ PL + L A + + + L S +YG
Sbjct: 192 LLTTEEPLRGCLDHVSRMLRGGVEIDRAMLHIAKIYRTEEFELVGSVLRLSVKYGGRADV 251
Query: 271 SLRVLVSETRSERLMEAEKKAASLGPKLT--VPMIIFFLPVLILVIIGPAILSIIDT 325
L + R E E A S +L+ V +++ +++ P L +
Sbjct: 252 MLERMAVFMRDLEQAERELTAMSAETRLSAFVLVMLPIAIASFVIMTNPQYLHGMWN 308
>gi|228925183|ref|ZP_04088293.1| hypothetical protein bthur0011_60550 [Bacillus thuringiensis
serovar huazhongensis BGSC 4BD1]
gi|228834522|gb|EEM80051.1| hypothetical protein bthur0011_60550 [Bacillus thuringiensis
serovar huazhongensis BGSC 4BD1]
Length = 288
Score = 64.9 bits (157), Expect = 2e-08, Method: Composition-based stats.
Identities = 51/270 (18%), Positives = 107/270 (39%), Gaps = 28/270 (10%)
Query: 66 DSASSRLRTRDSKSLRNFVKKLNLKAILVD--ENIVNKLRAAGFRSEYSLNILLVVRLVV 123
++A + ++ + + L+ K + + E I KL AG + L +++
Sbjct: 36 ENAKRIEKKNLNQMMLAPFQSLSHKYLTEEKKEQIQKKLEEAGL--DTKPEEYLKMKVAY 93
Query: 124 PIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAW 183
PIIF + +I +D L +LI + + P + +++ + K
Sbjct: 94 PIIFTSVFLICTVFHDYYL-------FKVGVLISPLLYFYPDYLLKRRIKQAIEARKFEL 146
Query: 184 PDALDLLLICVESGISIDQ---ALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFE 240
P+ L +L +++ +++ A + L+ E+ E+ + F
Sbjct: 147 PEYLIPMLQLLKTHTTLEAVKKAQIYAGRHLRPYVSTLTAEL-----EMYAGSD--QPFR 199
Query: 241 NFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV 300
NF V T AL Q+ + T SLR++ ++ + R ++ E + K
Sbjct: 200 NFAASLNSPEVNTFTIALQQAQK--TDKVQSLRIMDAQIKMMRELKHENYNRLIQNK--- 254
Query: 301 PMII--FFLPVLILVIIGPAILSIIDTMKD 328
PM + F + V+ ++I P ++ I M+
Sbjct: 255 PMEMNKFNVAVIGCIVIYPMVIVIQSLMQG 284
>gi|258624767|ref|ZP_05719698.1| Flp pilus assembly protein TadB [Vibrio mimicus VM603]
gi|262173890|ref|ZP_06041567.1| flp pilus assembly protein TadB [Vibrio mimicus MB-451]
gi|258582929|gb|EEW07747.1| Flp pilus assembly protein TadB [Vibrio mimicus VM603]
gi|261891248|gb|EEY37235.1| flp pilus assembly protein TadB [Vibrio mimicus MB-451]
Length = 303
Score = 64.9 bits (157), Expect = 2e-08, Method: Composition-based stats.
Identities = 33/195 (16%), Positives = 69/195 (35%), Gaps = 10/195 (5%)
Query: 121 LVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIK 180
L + + FLI I F D L+ + + + + +V F L + + +
Sbjct: 76 LKLLMFFLISAIAVYFINDFFLQQTYWKVLLFLQPLLFVVFIV------KLRAHKTAKFQ 129
Query: 181 RAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFE 240
+PDAL++L + +G SI A V + + + E L +
Sbjct: 130 SNFPDALNILSGALSAGQSIVHAFEYVGKQLDN---DVGYEFKFMAERLLIGEDPDEVLA 186
Query: 241 NFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV 300
+ + G + + + + R ++ +K A + + +
Sbjct: 187 RSAASFPYVEYFFFASTIRINLSRGGQLKEVINRINRIMFDARAVDKKKNALTSEARSSA 246
Query: 301 PMIIFFLPVLILVII 315
+I LPV+ L+I+
Sbjct: 247 KIIA-ALPVIFLLIL 260
>gi|221213136|ref|ZP_03586112.1| type II secretion system protein [Burkholderia multivorans CGD1]
gi|221167349|gb|EED99819.1| type II secretion system protein [Burkholderia multivorans CGD1]
Length = 337
Score = 64.9 bits (157), Expect = 2e-08, Method: Composition-based stats.
Identities = 33/177 (18%), Positives = 60/177 (33%), Gaps = 5/177 (2%)
Query: 151 GAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAED 210
A + G VW+++ +Q+R+ I R P LD ++ V G S+ A +
Sbjct: 135 LACLAALACGISVFGVWLASRIQRRRLKIVRQIPSFLDGIVRLVTLGNSVPAAFQAA--- 191
Query: 211 IGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGD 270
+ PL + L A + + + L S +YG
Sbjct: 192 LLTTEEPLRGCLDHVSRMLRGGVEIDRAMLHIAKIYRTEEFELVGSVLRLSVKYGGRADV 251
Query: 271 SLRVLVSETRSERLMEAEKKAASLGPKLT--VPMIIFFLPVLILVIIGPAILSIIDT 325
L + R E E A S +L+ V +++ +++ P L +
Sbjct: 252 MLERMAVFMRDLEQAERELTAMSAETRLSAFVLVMLPIAIASFVIMTNPQYLHGMWN 308
>gi|291537187|emb|CBL10299.1| hypothetical protein ROI_34750 [Roseburia intestinalis M50/1]
Length = 245
Score = 64.9 bits (157), Expect = 2e-08, Method: Composition-based stats.
Identities = 27/186 (14%), Positives = 71/186 (38%), Gaps = 7/186 (3%)
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
+ + + + F ++L+ V + S + + +R + + DA+
Sbjct: 14 LGCLAAGTAVAAAIAWLFYRSWYGMVLVIPVNYLIVSYYKNKKRDERAKKLMIEFRDAIQ 73
Query: 189 LLLICVESGISIDQALRRVAED---IGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
+ + +G SI+ A + + + G+ +++E++ AE+ N + + R
Sbjct: 74 TVAAALLAGYSIEHAWKEAEREIMDLYGKEAMITKELIQMNAEIKLNRNVEEILHDLAVR 133
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAE----KKAASLGPKLTVP 301
+ ++ +++ + + R G +R + ++ +E E L K+
Sbjct: 134 SGVEEIQSFAEIFGFAKRSGGDFPQIIRTTAARISAKIEVEREVDTVIAGKKLEGKIMSV 193
Query: 302 MIIFFL 307
M F L
Sbjct: 194 MPFFIL 199
>gi|257064724|ref|YP_003144396.1| Flp pilus assembly protein TadB [Slackia heliotrinireducens DSM
20476]
gi|256792377|gb|ACV23047.1| Flp pilus assembly protein TadB [Slackia heliotrinireducens DSM
20476]
Length = 332
Score = 64.9 bits (157), Expect = 2e-08, Method: Composition-based stats.
Identities = 29/181 (16%), Positives = 58/181 (32%), Gaps = 11/181 (6%)
Query: 123 VPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRA 182
+ + G L L G V + G S+ + Q+ ++
Sbjct: 108 LMCALAVFGFALGLAVSGSLVAALCLSGGCVFAVVAAG--------SHAADEEQNRLREL 159
Query: 183 WPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENF 242
PDAL + C ++G+S+ Q A + PLS+ ++ + A + F
Sbjct: 160 VPDALRCMESCFQAGLSLPQTFAETARETE---PPLSQTFAQVSHDIELGHSVDEALDRF 216
Query: 243 YNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPM 302
+ + + AL G LR+ + + + KL+ +
Sbjct: 217 RLGSGLPELAFVAVALDVQYVSGGDATSVLRIAQDSVDHALELRRTLRVQTAQAKLSAQI 276
Query: 303 I 303
+
Sbjct: 277 V 277
>gi|291540421|emb|CBL13532.1| hypothetical protein RO1_32050 [Roseburia intestinalis XB6B4]
Length = 245
Score = 64.9 bits (157), Expect = 2e-08, Method: Composition-based stats.
Identities = 27/186 (14%), Positives = 71/186 (38%), Gaps = 7/186 (3%)
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
+ + + + F ++L+ V + S + + +R + + DA+
Sbjct: 14 LGCLAAGTAVAAAIAWLFYRSWYGMVLVIPVNYLIVSYYKNKKRDERAKKLMIEFRDAIQ 73
Query: 189 LLLICVESGISIDQALRRVAED---IGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
+ + +G SI+ A + + + G+ +++E++ AE+ N + + R
Sbjct: 74 AVAAALLAGYSIEHAWKEAEREIMDLYGKEAMITKELIQMNAEIKLNRNVEEILHDLAVR 133
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAE----KKAASLGPKLTVP 301
+ ++ +++ + + R G +R + ++ +E E L K+
Sbjct: 134 SGVEEIQSFAEIFGFAKRSGGDFPQIIRTTAARISAKIEVEREVDTVIAGKKLEGKIMSV 193
Query: 302 MIIFFL 307
M F L
Sbjct: 194 MPFFIL 199
>gi|282853288|ref|ZP_06262625.1| type II secretion system F domain protein [Propionibacterium acnes
J139]
gi|282582741|gb|EFB88121.1| type II secretion system F domain protein [Propionibacterium acnes
J139]
Length = 249
Score = 64.5 bits (156), Expect = 2e-08, Method: Composition-based stats.
Identities = 40/196 (20%), Positives = 87/196 (44%), Gaps = 6/196 (3%)
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
++ G++ + +PF G +L+G V + ++ ++ + P+AL
Sbjct: 56 VLAGLVAACAVLVGVPWPFPAAAGLSVLVGAVMWWGSGRLEASGHRRMEQHRAAQLPEAL 115
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQ 247
+L +E+G+ + A+ VAE + G P +E++ + L+ A+ + +
Sbjct: 116 LMLSSAMEAGLPLRSAVTTVAESLEG---PCAEDLRRLASSLAAGVPDSRAWNDLAS--- 169
Query: 248 MDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFL 307
++ R+ Q + ++ G I + L ++ + +AEKKA G P++ L
Sbjct: 170 VEVWRDPAQDVSRAVNSGEGISELLSAHAAQLQVAAAEKAEKKARKAGVDAIGPLVCCHL 229
Query: 308 PVLILVIIGPAILSII 323
P +LV + P I ++
Sbjct: 230 PAFLLVGVVPIIAGMV 245
>gi|187478774|ref|YP_786798.1| pilus assembly protein [Bordetella avium 197N]
gi|115423360|emb|CAJ49894.1| putative pilus assembly protein [Bordetella avium 197N]
Length = 282
Score = 64.5 bits (156), Expect = 2e-08, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 59/138 (42%), Gaps = 3/138 (2%)
Query: 161 FCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSE 220
+ P++ + L Q+R ++ P L L + +G S+ ALR++A+ PL++
Sbjct: 89 WRLPAISLRRLRQRRLERLQAQLPAGLLSLASALRAGASLPAALRQLAD---LAQPPLAQ 145
Query: 221 EMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETR 280
E+ L + E + A R + VR T A + G ++ +L + R
Sbjct: 146 EIGLMLREQRLGVSFDDALHRLECRVDLPSVRLMTAAFRVAGSAGGNLAQTLEGIAQALR 205
Query: 281 SERLMEAEKKAASLGPKL 298
+ L E KA + ++
Sbjct: 206 GQLLAEGRLKALTAQGRM 223
>gi|154151943|ref|YP_001405561.1| type II secretion system protein [Candidatus Methanoregula boonei
6A8]
gi|154000495|gb|ABS56918.1| type II secretion system protein [Methanoregula boonei 6A8]
Length = 300
Score = 64.5 bits (156), Expect = 2e-08, Method: Composition-based stats.
Identities = 38/217 (17%), Positives = 78/217 (35%), Gaps = 12/217 (5%)
Query: 114 NILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQ---LRVGAVILIGYVGFCAPSVWISN 170
++ +V ++V + +++ I P + + A+I + P ++ N
Sbjct: 52 SLWIVSTILVGSVMVLVASIIFLVPQSPFAIPSPAPYILLFALIGSAAIAIGFP-FYLQN 110
Query: 171 LVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELS 230
++ ++ I P AL + I SG + +RR+A + GQ +S E + +
Sbjct: 111 QIENKKRDIDTQIPYALAFMSILASSGATPLDIIRRIAREDYGQ---ISNEFRKVLFRVD 167
Query: 231 -FLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEK 289
+ A T D R+ + G + L E + R ++
Sbjct: 168 ILGEDVVTAMNGLVQNTPSDLFRDICIDITNIIYGGGGLKSYLETKSKELMAIRRQTYKE 227
Query: 290 KAASLGP----KLTVPMIIFFLPVLILVIIGPAILSI 322
SL L ++ L +L +VI G + +
Sbjct: 228 FVESLAVFGEGYLGGVVMTITLAILGVVISGALGIQL 264
>gi|270487716|ref|ZP_06204790.1| type II secretion system F domain protein [Yersinia pestis KIM D27]
gi|270336220|gb|EFA46997.1| type II secretion system F domain protein [Yersinia pestis KIM D27]
Length = 217
Score = 64.5 bits (156), Expect = 2e-08, Method: Composition-based stats.
Identities = 30/148 (20%), Positives = 63/148 (42%), Gaps = 4/148 (2%)
Query: 168 ISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIA 227
+ K K+ +P+ L ++ + SG SI+Q L R ++I G PL +E+ L
Sbjct: 31 LKYARSKHYLLFKQDFPEVLLMINMAASSGASINQVLERCGKEIRG---PLGQELGLICR 87
Query: 228 ELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEA 287
L+ + F + Y R ++ + + G + + + L ++ E
Sbjct: 88 RLNLGETPETVFYDAYERFHYPEFYFLVTIILLNIQQGGQLKELITRLSQIITKKKTTEQ 147
Query: 288 EKKAASLGPKLTVPMIIFFLPVLILVII 315
+K + +++V II +P+L ++
Sbjct: 148 KKAVMTAQIRMSV-NIISIMPMLFSFLL 174
>gi|331003047|ref|ZP_08326559.1| hypothetical protein HMPREF0491_01421 [Lachnospiraceae oral taxon
107 str. F0167]
gi|330413091|gb|EGG92466.1| hypothetical protein HMPREF0491_01421 [Lachnospiraceae oral taxon
107 str. F0167]
Length = 409
Score = 64.5 bits (156), Expect = 2e-08, Method: Composition-based stats.
Identities = 44/242 (18%), Positives = 99/242 (40%), Gaps = 14/242 (5%)
Query: 86 KLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYP 145
++ K + +E I+ LR +++ ++P + +I+ F +
Sbjct: 172 RICPKTLSEEERILKGLREVIIQADKEQIEKDG--YILPETYSGRKLIYRFRENT----D 225
Query: 146 FQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALR 205
F L ++I + + ++K + + + +PD + L++ + +G+S+ Q+
Sbjct: 226 FNLIWIIGVIIALLLYLREKEREKFNLEKIKRELMKDYPDIVSKLIVFIGAGLSVRQSWE 285
Query: 206 RVAEDIGGQSVP------LSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALI 259
+ +D + EEM L + + +++F + L
Sbjct: 286 SIVKDYENEYRENNEKRYAYEEMAKAYERLKNGTHENIVYKDFGRSCSLRQYMKLASLLE 345
Query: 260 QSDRYG-TSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPA 318
Q+ R G +++ L + ERL A ++ L KL +P+ I L V++++I PA
Sbjct: 346 QNRRSGISNLHTLLSMESQSAWDERLNLARREGEELNTKLLLPLFIMLLIVMMMII-VPA 404
Query: 319 IL 320
+L
Sbjct: 405 LL 406
>gi|124486274|ref|YP_001030890.1| hypothetical protein Mlab_1458 [Methanocorpusculum labreanum Z]
gi|124363815|gb|ABN07623.1| type II secretion system protein [Methanocorpusculum labreanum Z]
Length = 625
Score = 64.5 bits (156), Expect = 2e-08, Method: Composition-based stats.
Identities = 48/318 (15%), Positives = 128/318 (40%), Gaps = 25/318 (7%)
Query: 10 DATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSAS 69
D LA+ + + I ++I+ +++ +LG + KR++ + Q+T ++ +
Sbjct: 254 DPMILAIVVYLMLPIGTVIFLLLLDALGQTYIIKRVQ--MPRSTVPLYPQLTIVEAEEDE 311
Query: 70 SRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLI 129
+ L + L+ + K+L + + + A LV +P+ +
Sbjct: 312 TPLFEK----LKKYDKRLKYMEFIRHPRLAIREEPA-----------LVFVFSIPLSLIT 356
Query: 130 LGIIWI----FGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPD 185
++++ ++ + Y + + V V+++ + P +R ++ A PD
Sbjct: 357 GVVLYVSTVKVFFNPYMIYQWGMAVDDVVVVMLLVALMPYAISYRNYVRRIDKVEGALPD 416
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
L V+ +++ A+ A++ + E++ + +L + A + F +R
Sbjct: 417 FCRQLSSLVKYNMTLTHAIELTAQEGKSY---IQEDIRILSRDLLWGEKLSSALKRFADR 473
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
+ V L Q++ + + ++ + E R ++ + +G + + + F
Sbjct: 474 MKNLSVDRLVILLSQTEHFTNDLSLTIDLQYHEA-KARESLKRERKSDMGVYVVIVFMAF 532
Query: 306 FLPVLILVIIGPAILSII 323
+ V + VI+ L+I+
Sbjct: 533 AVFVFVQVIMSEVFLNIM 550
>gi|190015135|ref|YP_001966620.1| conserved hypothetical protein [Bacillus cereus]
gi|190015401|ref|YP_001966946.1| hypothetical protein pPER272_0075 [Bacillus cereus]
gi|116584811|gb|ABK00926.1| conserved hypothetical protein [Bacillus cereus]
gi|116585082|gb|ABK01191.1| conserved hypothetical protein [Bacillus cereus]
Length = 276
Score = 64.5 bits (156), Expect = 2e-08, Method: Composition-based stats.
Identities = 50/270 (18%), Positives = 107/270 (39%), Gaps = 28/270 (10%)
Query: 66 DSASSRLRTRDSKSLRNFVKKLNLKAILVDEN--IVNKLRAAGFRSEYSLNILLVVRLVV 123
++A + ++ + + L+ K + ++ I KL AG + L +++
Sbjct: 24 ENAKRIEKKNLNQMMLAPFQSLSHKYLTEEKKELIQKKLEEAGL--DTKPEEYLKMKVAY 81
Query: 124 PIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAW 183
PIIF + +I +D L +LI + + P + +++ + K
Sbjct: 82 PIIFTSVFLICTVFHDYYL-------FKVGVLISPLLYFYPDYLLKRRIKQAIEARKFEL 134
Query: 184 PDALDLLLICVESGISIDQ---ALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFE 240
P+ L +L +++ +++ A + L+ E+ E+ + F
Sbjct: 135 PEYLIPMLQLLKTHTTLEAVKKAQIYAGRHLRPYVSTLTAEL-----EMYAGSD--QPFR 187
Query: 241 NFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV 300
NF V T AL Q+ + T SLR++ ++ + R ++ E + K
Sbjct: 188 NFAAALNSPEVNTFTIALQQAQK--TDKVQSLRIMDAQIKMMRELKHENYNRLIQNK--- 242
Query: 301 PMII--FFLPVLILVIIGPAILSIIDTMKD 328
PM + F + V+ ++I P ++ I M+
Sbjct: 243 PMEMNKFNVAVIGCIVIYPMVIVIQSLMQG 272
>gi|283457756|ref|YP_003362343.1| Flp pilus assembly protein TadB [Rothia mucilaginosa DY-18]
gi|283133758|dbj|BAI64523.1| Flp pilus assembly protein TadB [Rothia mucilaginosa DY-18]
Length = 315
Score = 64.5 bits (156), Expect = 2e-08, Method: Composition-based stats.
Identities = 39/214 (18%), Positives = 71/214 (33%), Gaps = 17/214 (7%)
Query: 79 SLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGY 138
L F D +V LR AG S + + V + + +L ++
Sbjct: 48 YLSCFPDNGKPPKPSNDPALVVALRKAGMHS-LTPRTFMWVSVASGVTASVLLLM----- 101
Query: 139 DKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGI 198
+ +L GF AP V +++ + + I + WPDA+D L + +G+
Sbjct: 102 -------VTQLLPLGLLGLIGGFVAPRVVVNHRARAADARIWQLWPDAVDHLRSAIRAGL 154
Query: 199 SIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQAL 258
S+ +AL +++ L + + + +AL
Sbjct: 155 SLPEALIQLS---YRGPEELRDAFAHFSRDYRASGEFVPSLNRLKEYLSDPVADTIIEAL 211
Query: 259 IQSDRYGTS-IGDSLRVLVSETRSERLMEAEKKA 291
+ G S +G L L R +E A
Sbjct: 212 KIAREVGGSDLGKLLGTLSDFLRDNARTRSELLA 245
>gi|225386975|ref|ZP_03756739.1| hypothetical protein CLOSTASPAR_00725 [Clostridium asparagiforme
DSM 15981]
gi|225046987|gb|EEG57233.1| hypothetical protein CLOSTASPAR_00725 [Clostridium asparagiforme
DSM 15981]
Length = 308
Score = 64.5 bits (156), Expect = 2e-08, Method: Composition-based stats.
Identities = 36/190 (18%), Positives = 71/190 (37%), Gaps = 7/190 (3%)
Query: 140 KLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGIS 199
L Y F A +++ VG P +L ++R + + D + +L + +G S
Sbjct: 88 ALAAYVFYRSAAAFLVMAPVGIVYPLYCREDLKRQRLCRLNLEFKDGILVLASFLSAGYS 147
Query: 200 IDQALRRVAEDIG---GQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQ 256
I+ A+ ++ G ++ E L + F + R+ ++ V N Q
Sbjct: 148 IENAVAASGRELTLLYGADGLMAGEFEEMARGLRLNRTVESVFLDLGGRSGLEDVNNFAQ 207
Query: 257 ALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVII- 315
+ R G + + + R + + E+ K I+ +PVLI++ I
Sbjct: 208 VFAAAKRSGGDLVEIISHTAGVIRDK-VQVQEEIHTMTASKAFEQKIMSLVPVLIVLYID 266
Query: 316 --GPAILSII 323
P I+
Sbjct: 267 LTSPGFFDIM 276
>gi|297568750|ref|YP_003690094.1| Type II secretion system F domain protein [Desulfurivibrio
alkaliphilus AHT2]
gi|296924665|gb|ADH85475.1| Type II secretion system F domain protein [Desulfurivibrio
alkaliphilus AHT2]
Length = 305
Score = 64.5 bits (156), Expect = 2e-08, Method: Composition-based stats.
Identities = 37/163 (22%), Positives = 64/163 (39%), Gaps = 4/163 (2%)
Query: 146 FQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALR 205
+L+ G A + Q+R+ + P +D LL V +G ++D AL
Sbjct: 98 LLFGPAGAVLLPVGGGAAAGGLLYYRSQRRRRLMVAQIPTFIDQLLRAVAAGHTLDAALL 157
Query: 206 RVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYG 265
D PL E + E+ A ++ +R A+ + RYG
Sbjct: 158 TATADSRL---PLGEVLEQVTREIKLGGEIDTALSEAIRLYDLEELRLLALAIRVNRRYG 214
Query: 266 TSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP 308
+SI + LR LV+ + E E +A + +LT ++ +P
Sbjct: 215 SSIQELLRSLVTLIQQEETSRQEFRALTGESRLTA-WVLGLMP 256
>gi|291520243|emb|CBK75464.1| Bacterial type II secretion system protein F domain [Butyrivibrio
fibrisolvens 16/4]
Length = 132
Score = 64.5 bits (156), Expect = 2e-08, Method: Composition-based stats.
Identities = 30/132 (22%), Positives = 57/132 (43%), Gaps = 8/132 (6%)
Query: 198 ISIDQALRRVAEDI------GGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCV 251
+S +AL R+ + G + P EE+L T ++ A E ++
Sbjct: 1 MSFRKALERIVKRYSDGVNNGQEKRPGFEEILKTYRKIVDGKGEIQALEELGKSSECKEY 60
Query: 252 RNATQALIQSDRYGT-SIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVL 310
R + L+Q+ + G+ + +SL S R A + KL +P+ L ++
Sbjct: 61 RKLSMLLVQNLKKGSKDLLESLEKEESAAFEMRKQRALRLGEEASTKLLIPL-AGMLFLV 119
Query: 311 ILVIIGPAILSI 322
I+V+I PA++ +
Sbjct: 120 IVVLIVPALMQV 131
>gi|329765281|ref|ZP_08256861.1| Flp pilus assembly protein TadC [Candidatus Nitrosoarchaeum limnia
SFB1]
gi|329138187|gb|EGG42443.1| Flp pilus assembly protein TadC [Candidatus Nitrosoarchaeum limnia
SFB1]
Length = 304
Score = 64.5 bits (156), Expect = 2e-08, Method: Composition-based stats.
Identities = 43/197 (21%), Positives = 81/197 (41%), Gaps = 4/197 (2%)
Query: 118 VVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQS 177
+ + ++ I + +I I L +R +I VG P +R+
Sbjct: 27 ITKTIMFSIIASVSVILISLEFSKLLESSMIRDVGIIFGIMVG-IIPLTIHQLREVQRRD 85
Query: 178 SIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQV 237
SI R P L LL V+SG ++ +A+ + AE L+ E+ A +S+ +
Sbjct: 86 SIDRNMPVFLLALLSSVQSGSNLIKAIEQAAER---NLGALTPELKNLKANISWGTPIED 142
Query: 238 AFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPK 297
AFENF RT R T L + + G + ++L ++ + +E +K+A
Sbjct: 143 AFENFAKRTGTRVSRRVTVLLEMAMKIGGDVSENLEMIQKHVSEMQNIEKSRKSALQPYT 202
Query: 298 LTVPMIIFFLPVLILVI 314
T+ + + +++
Sbjct: 203 YTIYISFAVFLAVSVLL 219
>gi|228950020|ref|ZP_04112208.1| hypothetical protein bthur0007_60920 [Bacillus thuringiensis
serovar monterrey BGSC 4AJ1]
gi|228809667|gb|EEM56100.1| hypothetical protein bthur0007_60920 [Bacillus thuringiensis
serovar monterrey BGSC 4AJ1]
Length = 288
Score = 64.5 bits (156), Expect = 2e-08, Method: Composition-based stats.
Identities = 50/270 (18%), Positives = 107/270 (39%), Gaps = 28/270 (10%)
Query: 66 DSASSRLRTRDSKSLRNFVKKLNLKAILVD--ENIVNKLRAAGFRSEYSLNILLVVRLVV 123
++A + ++ + + L+ K + + E I KL AG + L +++
Sbjct: 36 ENAKRIEKKNLNQMMLAPFQSLSHKYLTEEKKEQIQKKLEEAGL--DTKPEEYLKMKVAY 93
Query: 124 PIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAW 183
P+IF + +I +D L +LI + + P + +++ + K
Sbjct: 94 PVIFTSVFLICTVFHDYYL-------FKVGVLISPLLYFYPDYLLKKRIKQAIEARKFEL 146
Query: 184 PDALDLLLICVESGISIDQ---ALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFE 240
P+ L +L +++ +++ A + L+ E+ E+ + F
Sbjct: 147 PEYLIPMLQLLKTHTTLEAVKKAQIYAGRHLRPYVSTLTAEL-----EMYAGSD--QPFR 199
Query: 241 NFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV 300
NF V T AL Q+ + T SLR++ ++ + R ++ E + K
Sbjct: 200 NFAAALNSPEVNTFTIALQQAQK--TDKVQSLRIMDAQIKMMRELKHENYNRLIQNK--- 254
Query: 301 PMII--FFLPVLILVIIGPAILSIIDTMKD 328
PM + F + V+ ++I P ++ I M+
Sbjct: 255 PMEMNKFNVAVIGCIVIYPMVIVIQSLMQG 284
>gi|325963897|ref|YP_004241803.1| Flp pilus assembly protein TadB [Arthrobacter phenanthrenivorans
Sphe3]
gi|323469984|gb|ADX73669.1| Flp pilus assembly protein TadB [Arthrobacter phenanthrenivorans
Sphe3]
Length = 285
Score = 64.1 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 28/167 (16%), Positives = 55/167 (32%), Gaps = 4/167 (2%)
Query: 126 IFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPD 185
LI + + + L+ Y P + +KR + +++ WPD
Sbjct: 52 GGLIGTCLGLGLFVALVFYTVSRSWPIAGCFALFAAWLPISILRWRAKKRSALLRQLWPD 111
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
+D L + +G+ + +AL ++ + L A+ + +R
Sbjct: 112 VVDHLRSAIRAGLPLPEALIQLGDK---GPEELRHVFRDFGADYRAGGQFDASLNKLKHR 168
Query: 246 TQMDCVRNATQALIQSDRYGTS-IGDSLRVLVSETRSERLMEAEKKA 291
+AL + G S +G L L R +E +A
Sbjct: 169 LADPVADRIVEALRLTREVGGSDLGKLLGTLAEFLRESARTRSELEA 215
>gi|310640813|ref|YP_003945571.1| flp pilus assembly protein tadb-like protein [Paenibacillus
polymyxa SC2]
gi|309245763|gb|ADO55330.1| Flp pilus assembly protein TadB-like protein [Paenibacillus
polymyxa SC2]
Length = 263
Score = 64.1 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 35/190 (18%), Positives = 71/190 (37%), Gaps = 5/190 (2%)
Query: 130 LGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDL 189
+ I+ + Y F + +L P + L+Q+R+S++ + AL
Sbjct: 33 MCILSSGVLFATIGYLFYHQWILSLLCAAGAVVMPRYFRKFLLQRRRSALSIQFKQALYS 92
Query: 190 LLICVESGISIDQALRRVAEDIGGQSVP----LSEEMLLTIAELSFLPNRQVAFENFYNR 245
L + +G S++ R ED+ S L E + A L + A ++ R
Sbjct: 93 LSSSLSAGRSVENGFREAVEDLRLLSPDGDHDLIFEFNIITACLEIGQPVEAALQDLARR 152
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
Q++ + N R G + + +R S + L ++ + K ++F
Sbjct: 153 AQIEDITNFADVFAACKRTGGDLVEVVRRASSVIGEK-LEIQQEIGVMIAQKRFESRVMF 211
Query: 306 FLPVLILVII 315
P L ++ +
Sbjct: 212 AAPFLFVLFM 221
>gi|307295328|ref|ZP_07575167.1| Type II secretion system F domain protein [Sphingobium
chlorophenolicum L-1]
gi|306878831|gb|EFN10050.1| Type II secretion system F domain protein [Sphingobium
chlorophenolicum L-1]
Length = 297
Score = 64.1 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 36/195 (18%), Positives = 68/195 (34%), Gaps = 6/195 (3%)
Query: 122 VVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKR 181
V IL I L + A+++ +G W+ Q R ++
Sbjct: 68 VTARGLGILAGILALAAVFALLAAGPVAALALVVGVPLGLLG---WVRRRAQVRVEALIE 124
Query: 182 AWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFEN 241
A P +D + G S+ QAL R + + + L A +
Sbjct: 125 ALPYYIDAVRQMQAVGNSLAQALDRA---LADAPGVVWGFIAPVARRLELGAPVADAMQM 181
Query: 242 FYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVP 301
R ++ + A+ + RYG SI L L + R ++ E KAA +++
Sbjct: 182 LAERLRVPEISMLAAAIRTNMRYGGSISAVLLNLANILRERIRIKRELKAAISEARISGR 241
Query: 302 MIIFFLPVLILVIIG 316
++I + +++
Sbjct: 242 VLIVMPLAAMALLVA 256
>gi|239917279|ref|YP_002956837.1| Flp pilus assembly protein TadB [Micrococcus luteus NCTC 2665]
gi|281414243|ref|ZP_06245985.1| Flp pilus assembly protein TadB [Micrococcus luteus NCTC 2665]
gi|239838486|gb|ACS30283.1| Flp pilus assembly protein TadB [Micrococcus luteus NCTC 2665]
Length = 285
Score = 64.1 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 29/170 (17%), Positives = 59/170 (34%), Gaps = 4/170 (2%)
Query: 123 VPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRA 182
+ ++ + LL G P + +S ++R ++++
Sbjct: 49 LSPAGVVSAMAVGGLVVGLLVLSLTSTWTIAACFAVFGAAVPWLLLSWQARRRSTALREL 108
Query: 183 WPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENF 242
WPDA+D + +G+++ +AL ++ E L E + A +
Sbjct: 109 WPDAIDHARSAIRAGLTLPEALIQLGE---TGPEGLREPFQQFARDYRAGARFVDALDRL 165
Query: 243 YNRTQMDCVRNATQALIQSDRYGTS-IGDSLRVLVSETRSERLMEAEKKA 291
R +L + G + IG L+ L R + + AE +A
Sbjct: 166 KARMADPVADRLVVSLRLTREVGGADIGRLLQTLSEFLRQDARIRAELEA 215
>gi|269955643|ref|YP_003325432.1| type II secretion system protein [Xylanimonas cellulosilytica DSM
15894]
gi|269304324|gb|ACZ29874.1| type II secretion system protein [Xylanimonas cellulosilytica DSM
15894]
Length = 301
Score = 64.1 bits (155), Expect = 3e-08, Method: Composition-based stats.
Identities = 40/215 (18%), Positives = 84/215 (39%), Gaps = 6/215 (2%)
Query: 110 EYSLNILLVVRLVVPIIFLILGIIWIFGYDKL-LEYPFQLRVGAVILIGYVGFCAPSVWI 168
+ + +L+V + LI Y + L P + A + + + F P+ +
Sbjct: 87 QIPVTRFYADKLIVAGLGLIAVPAATALYAAMGLRLPVTIPAVASLALAALLFFTPNAAV 146
Query: 169 SNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGG-QSVPLSEEMLLTIA 227
+ ++ + +RA LDL+ + SG + A+ A+ L E + T
Sbjct: 147 ARDAKQARGQFRRALALYLDLVAVERRSGAGVRPAMEAAADVADSWVFRRLGEVLRRTQW 206
Query: 228 ELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEA 287
A E + + +++ + S G + D LR + RS L E
Sbjct: 207 ---SGQPPWDALEQMADELGLPELKDFADIVGLSATQGAAAYDHLRARSAALRSAILSED 263
Query: 288 EKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
A ++G ++ +P + + + + ++I PA+L +
Sbjct: 264 LTAANNIGERMAIPSSLLGV-IFMALLIAPAVLRM 297
>gi|167570102|ref|ZP_02362976.1| hypothetical protein BoklC_09676 [Burkholderia oklahomensis C6786]
Length = 268
Score = 64.1 bits (155), Expect = 3e-08, Method: Composition-based stats.
Identities = 41/208 (19%), Positives = 68/208 (32%), Gaps = 7/208 (3%)
Query: 120 RLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSI 179
R VP I L ++ + L + + A + G W+++ QKR+ I
Sbjct: 35 RAGVPEIRTPLILLAAATFVATLWTGLRGGMLAAVATLVAGATLALFWLASRTQKRRLQI 94
Query: 180 KRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAF 239
R P LD ++ V G S+ A + + PL + L A
Sbjct: 95 VRQLPSFLDGIVRLVTLGNSVPAAFQ---ATLQTTEAPLRGCLDHVSRMLRSGVEIDRAM 151
Query: 240 ENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLT 299
++ L S +YG L + R E E A S +L+
Sbjct: 152 VYIAELYRIKEFELVGSVLRLSVKYGGRADVMLDRMAVFMRDLEQAERELAAMSAETRLS 211
Query: 300 VPMIIFFLPV---LILVIIGPAILSIID 324
++ LPV ++ P S +
Sbjct: 212 A-WVLGALPVGIGSFVIATNPKYFSAMW 238
>gi|167562911|ref|ZP_02355827.1| hypothetical protein BoklE_10150 [Burkholderia oklahomensis EO147]
Length = 258
Score = 64.1 bits (155), Expect = 3e-08, Method: Composition-based stats.
Identities = 41/208 (19%), Positives = 68/208 (32%), Gaps = 7/208 (3%)
Query: 120 RLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSI 179
R VP I L ++ + L + + A + G W+++ QKR+ I
Sbjct: 25 RAGVPEIRTPLILLAAATFVATLWTGLRGGMLAAVATLVAGATLALFWLASRTQKRRLQI 84
Query: 180 KRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAF 239
R P LD ++ V G S+ A + + PL + L A
Sbjct: 85 VRQLPSFLDGIVRLVTLGNSVPAAFQ---ATLQTTEAPLRGCLDHVSRMLRSGVEIDRAM 141
Query: 240 ENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLT 299
++ L S +YG L + R E E A S +L+
Sbjct: 142 VYIAELYRIKEFELVGSVLRLSVKYGGRADVMLDRMAVFMRDLEQAERELAAMSAETRLS 201
Query: 300 VPMIIFFLPV---LILVIIGPAILSIID 324
++ LPV ++ P S +
Sbjct: 202 A-WVLGALPVGIGSFVIATNPKYFSAMW 228
>gi|167902782|ref|ZP_02489987.1| type II secretion system protein [Burkholderia pseudomallei NCTC
13177]
Length = 223
Score = 64.1 bits (155), Expect = 3e-08, Method: Composition-based stats.
Identities = 27/149 (18%), Positives = 54/149 (36%), Gaps = 7/149 (4%)
Query: 169 SNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAE 228
L+ + + +PDALDL++ V +GI + QA+ + P+
Sbjct: 36 RILIGRFKQRFLSVFPDALDLIIRAVRAGIPVAQAIGTAGRESEE---PVRATFRAMGDA 92
Query: 229 LSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAE 288
L + + E R Q+ L+ G ++ ++L L R+ R + +
Sbjct: 93 LRVGADLKDVLEQQAERLQLADFSFFGVCLVLQRETGGNLTETLENLSGIIRTRRDIRMK 152
Query: 289 KKA----ASLGPKLTVPMIIFFLPVLILV 313
+A + K+ + L +V
Sbjct: 153 TRALTAEGRIASKIIAAVPFAIAGFLFVV 181
>gi|329905443|ref|ZP_08274133.1| type II secretion system protein [Oxalobacteraceae bacterium
IMCC9480]
gi|327547600|gb|EGF32398.1| type II secretion system protein [Oxalobacteraceae bacterium
IMCC9480]
Length = 161
Score = 64.1 bits (155), Expect = 3e-08, Method: Composition-based stats.
Identities = 21/121 (17%), Positives = 46/121 (38%), Gaps = 3/121 (2%)
Query: 194 VESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRN 253
+ +G+ ++ A +++ + PL++E L + E + + N R
Sbjct: 1 MRAGVGLNAATQQLVAE---SQPPLAQEFSLMLREQRLGVTLEQSLTNLSRRIPTTTTTL 57
Query: 254 ATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILV 313
A+ + G + ++L RS ME + A + KL ++ L+ V
Sbjct: 58 VVSAMRIAAETGGGLAEALERTSHTVRSRLQMEGKIGALTAQGKLQAWVVGMLPLSLMAV 117
Query: 314 I 314
+
Sbjct: 118 L 118
>gi|228938212|ref|ZP_04100827.1| hypothetical protein bthur0008_8800 [Bacillus thuringiensis serovar
berliner ATCC 10792]
gi|228971090|ref|ZP_04131723.1| hypothetical protein bthur0003_8720 [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228788613|gb|EEM36559.1| hypothetical protein bthur0003_8720 [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228821445|gb|EEM67455.1| hypothetical protein bthur0008_8800 [Bacillus thuringiensis serovar
berliner ATCC 10792]
Length = 288
Score = 64.1 bits (155), Expect = 3e-08, Method: Composition-based stats.
Identities = 53/267 (19%), Positives = 108/267 (40%), Gaps = 22/267 (8%)
Query: 66 DSASSRLRTRDSKSLRNFVKKLNLKAILVD--ENIVNKLRAAGFRSEYSLNILLVVRLVV 123
++A + ++ + + L K ++ + E I KL AG + L +++
Sbjct: 36 ENAKRIEKKNLNQMMLAPFQSLAHKYLIEEKKEQIQKKLEEAGL--DTKPEEYLKMKVAY 93
Query: 124 PIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAW 183
PIIF + +I +D L +LI + + P + +++ + K
Sbjct: 94 PIIFTSVFLICTVFHDYYL-------FKVGVLISPLLYFYPDYLLKRRIKQAIEARKFEL 146
Query: 184 PDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFY 243
P+ L +L +++ +++ + A+ G+ L + AEL F NF
Sbjct: 147 PEYLIPMLQLLKTHTTLEA--VKKAQIYAGRH--LRPYVSTLTAELEMYAGSDQPFRNFA 202
Query: 244 NRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMI 303
V T AL Q+ + T SLR++ ++ + R ++ E + K PM
Sbjct: 203 AALNSPEVNTFTIALQQAQK--TDKVQSLRIMDAQIKMMRELKHENYNRLIQNK---PME 257
Query: 304 I--FFLPVLILVIIGPAILSIIDTMKD 328
+ F + V+ ++I P ++ I M+
Sbjct: 258 MNKFNVAVIGCIVIYPMVIVIQSLMQG 284
>gi|228982434|ref|ZP_04142693.1| hypothetical protein bthur0002_55670 [Bacillus thuringiensis Bt407]
gi|228776617|gb|EEM24925.1| hypothetical protein bthur0002_55670 [Bacillus thuringiensis Bt407]
Length = 314
Score = 64.1 bits (155), Expect = 3e-08, Method: Composition-based stats.
Identities = 41/271 (15%), Positives = 98/271 (36%), Gaps = 28/271 (10%)
Query: 48 VAVEREILRKQQITSLQKDSASSRLRTRDSK-SLRNFVKKLNLKAILVDENIVNKLRAAG 106
++ + ++ + + +++K ASS+LR K L V+ + + AG
Sbjct: 18 ISTKEKMKEDKSVLTMRKSQASSKLRENALKLKLERMVET--KAKVSTKNTVETMCLQAG 75
Query: 107 FRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSV 166
+ + + ++ I+ IL ++ L VG+ P
Sbjct: 76 Y--KLTYGEFKLMSFTSAIVLPILVLV------------MTSNPILACLFIMVGYMIPGQ 121
Query: 167 WISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTI 226
I+ + +R + I+ ++L++ ++ ++++ D GQ + E+ T+
Sbjct: 122 IIAFIKNRRLNMIEEQVGSFMNLVVERYKAQNDFPKSIKESLYDFKGQEP-MYSEIRQTV 180
Query: 227 AELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTS------IGDSLRVLVSETR 280
++ A +N RT + + + GT +G++ + E R
Sbjct: 181 LDIELGIPTTDAMDNLARRTGNKYLERLSNYYQIAMTLGTEDARENLLGEAFQQF-EENR 239
Query: 281 SERLMEAEKKAASLGPKLTVPMIIFFLPVLI 311
+ ++ A + M+ P+LI
Sbjct: 240 KMKSTLRKEIAG--PVREAYIMVAAI-PLLI 267
>gi|49085940|gb|AAT51316.1| PA4301 [synthetic construct]
Length = 295
Score = 64.1 bits (155), Expect = 3e-08, Method: Composition-based stats.
Identities = 32/203 (15%), Positives = 71/203 (34%), Gaps = 19/203 (9%)
Query: 98 IVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIG 157
+ ++R AG + + L + +++ LG+ G L
Sbjct: 55 LARQMRRAGIQRPRPW-LFGAAVLALLLVWSGLGLFGTIGALGGLLLAALSC-------- 105
Query: 158 YVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVP 217
V + L Q+R + R P LD ++ + +G ++ AL + E+ P
Sbjct: 106 -------RVALGMLYQRRLKRMIRQMPRFLDQVVRSLHAGRTLGDALMQAVENAEE---P 155
Query: 218 LSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVS 277
L + L + + A + +++ +R + + RYG + D L +V
Sbjct: 156 LRDIFTLARNHVLLGIHLPEALQEVAELYEVEELRILALGVSVNHRYGGNTSDLLDSIVK 215
Query: 278 ETRSERLMEAEKKAASLGPKLTV 300
+ + A + +++
Sbjct: 216 LIHEREKLSRQLHAMTGETRISA 238
>gi|290559841|gb|EFD93164.1| type II secretion system protein [Candidatus Parvarchaeum
acidophilus ARMAN-5]
Length = 356
Score = 63.7 bits (154), Expect = 3e-08, Method: Composition-based stats.
Identities = 36/259 (13%), Positives = 90/259 (34%), Gaps = 18/259 (6%)
Query: 68 ASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIF 127
S R +S R + +L K++ + + + A + + + +++ +
Sbjct: 8 NSGIKRKYKGRSKRELLSRLLPKSLTI--GLKEQFIYAQMTGDNPDETIGSIIMLLLVAA 65
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
+I GI+ + L +GAV I + G ++ + + I++ PD L
Sbjct: 66 VIGGILTFHFLNSAL-----YGLGAVAAILFGGIFLSEALVAMIADSVSTKIEKVLPDML 120
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQ 247
L+ + +G+ + + + + L+ + E A + T
Sbjct: 121 LLMAANLRAGMIPENSFI---SSMKPEFGKLNNLLNKAAIETQAGKTFPEALLEMNDLTS 177
Query: 248 MDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFL 307
+ +++ + + +S R G + L L S + ++ +A +F
Sbjct: 178 SEFFKDSVRIISESIRSGAELHLILENLASNLLQNESIRSDMRAQVKS------YSLFIF 231
Query: 308 PVLILVIIGPAILSIIDTM 326
+ GP + + +
Sbjct: 232 IA--ATLAGPLLYGVSSFL 248
>gi|240143494|ref|ZP_04742095.1| conserved hypothetical protein [Roseburia intestinalis L1-82]
gi|257204528|gb|EEV02813.1| conserved hypothetical protein [Roseburia intestinalis L1-82]
Length = 245
Score = 63.7 bits (154), Expect = 3e-08, Method: Composition-based stats.
Identities = 27/186 (14%), Positives = 71/186 (38%), Gaps = 7/186 (3%)
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
+ + + + F ++L+ V + S + + +R + + DA+
Sbjct: 14 LGCLAAGTAVAAAIAWLFYRSWYGMVLVIPVNYLIVSYYKNKKRDERAKKLMIEFRDAIQ 73
Query: 189 LLLICVESGISIDQALRRVAED---IGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
+ + +G SI+ A + + + G+ +++E++ AE+ N + + R
Sbjct: 74 AVAAALLAGYSIEHAWKEAEREIMDLYGKEAMITKELIQMNAEIKLNRNVEEILHDLAVR 133
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAE----KKAASLGPKLTVP 301
+ ++ +++ + + R G +R + ++ +E E L K+
Sbjct: 134 SGVEEIQSFAEIFGFAKRSGGDFPQIIRTTAARISAKIEVEREVDTVIAGKKLEGKIMSV 193
Query: 302 MIIFFL 307
M F L
Sbjct: 194 MPFFIL 199
>gi|119715489|ref|YP_922454.1| type II secretion system protein [Nocardioides sp. JS614]
gi|119536150|gb|ABL80767.1| type II secretion system protein [Nocardioides sp. JS614]
Length = 284
Score = 63.7 bits (154), Expect = 3e-08, Method: Composition-based stats.
Identities = 30/144 (20%), Positives = 51/144 (35%), Gaps = 4/144 (2%)
Query: 152 AVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDI 211
+ G +G AP +S ++RQ + WP+A+D L V +G+S+ AL +
Sbjct: 77 VALAFGLMGAWAPVGIVSGRARRRQRELAEVWPEAVDNLTSAVRAGMSLPDALAGLGSR- 135
Query: 212 GGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTS-IGD 270
PL + + + R + L + G +G
Sbjct: 136 --GPEPLRDAFDQFALDYQVTGRFGECLDRLKERLADPVGDRVVEGLRIAREVGGGELGR 193
Query: 271 SLRVLVSETRSERLMEAEKKAASL 294
LR L S R + +E +A
Sbjct: 194 LLRNLSSYLRDDARTRSELEARQA 217
>gi|315652231|ref|ZP_07905226.1| Kae1-associated kinase [Eubacterium saburreum DSM 3986]
gi|315485537|gb|EFU75924.1| Kae1-associated kinase [Eubacterium saburreum DSM 3986]
Length = 266
Score = 63.7 bits (154), Expect = 3e-08, Method: Composition-based stats.
Identities = 38/210 (18%), Positives = 78/210 (37%), Gaps = 12/210 (5%)
Query: 106 GFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPS 165
G + +RL+ ++ ++G F + F++ + AV + + G A
Sbjct: 17 GLMGNADDYHIYHMRLIDYLVGFLIGFALGFVVVMIF---FRVVIFAVTVGAFCGIPAIK 73
Query: 166 VWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDI---GGQSVPLSEEM 222
+ +KRQ + + D L+ L SG + +A +D+ G+ + E
Sbjct: 74 YYRKYRKEKRQRDLLIEFRDLLEALTTSYSSGKNTMEAFAESYQDLLSLYGEKSDIVNET 133
Query: 223 LLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSL----RVLVS- 277
+ IA ++ + +F R ++ V + T R G I + +++
Sbjct: 134 RIIIAGMTNNIIIEDLLRDFAERCGLEDVESFTSTFESGLRQGGDIRQVVWDSRKIINDK 193
Query: 278 -ETRSERLMEAEKKAASLGPKLTVPMIIFF 306
E E +K L + +P+II
Sbjct: 194 IEIEMEIKTMLTEKENELNIMMVMPLIIMV 223
>gi|15599497|ref|NP_252991.1| TadB [Pseudomonas aeruginosa PAO1]
gi|107100115|ref|ZP_01364033.1| hypothetical protein PaerPA_01001136 [Pseudomonas aeruginosa PACS2]
gi|218893393|ref|YP_002442262.1| TadB [Pseudomonas aeruginosa LESB58]
gi|254244888|ref|ZP_04938210.1| hypothetical protein PA2G_05761 [Pseudomonas aeruginosa 2192]
gi|9950523|gb|AAG07689.1|AE004846_6 TadB [Pseudomonas aeruginosa PAO1]
gi|126198266|gb|EAZ62329.1| hypothetical protein PA2G_05761 [Pseudomonas aeruginosa 2192]
gi|218773621|emb|CAW29435.1| TadB [Pseudomonas aeruginosa LESB58]
Length = 294
Score = 63.7 bits (154), Expect = 3e-08, Method: Composition-based stats.
Identities = 32/203 (15%), Positives = 71/203 (34%), Gaps = 19/203 (9%)
Query: 98 IVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIG 157
+ ++R AG + + L + +++ LG+ G L
Sbjct: 55 LARQMRRAGIQRPRPW-LFGAAVLALLLVWSGLGLFGTIGALGGLLLAALSC-------- 105
Query: 158 YVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVP 217
V + L Q+R + R P LD ++ + +G ++ AL + E+ P
Sbjct: 106 -------RVALGMLYQRRLKRMIRQMPRFLDQVVRSLHAGRTLGDALMQAVENAEE---P 155
Query: 218 LSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVS 277
L + L + + A + +++ +R + + RYG + D L +V
Sbjct: 156 LRDIFTLARNHVLLGIHLPEALQEVAELYEVEELRILALGVSVNHRYGGNTSDLLDSIVK 215
Query: 278 ETRSERLMEAEKKAASLGPKLTV 300
+ + A + +++
Sbjct: 216 LIHEREKLSRQLHAMTGETRISA 238
>gi|54309664|ref|YP_130684.1| Flp pilus assembly protein TadB [Photobacterium profundum SS9]
gi|46914102|emb|CAG20882.1| hypothetical Flp pilus assembly protein TadB [Photobacterium
profundum SS9]
Length = 302
Score = 63.7 bits (154), Expect = 3e-08, Method: Composition-based stats.
Identities = 32/195 (16%), Positives = 78/195 (40%), Gaps = 10/195 (5%)
Query: 121 LVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIK 180
L + I ++L + ++ + LL +L+ +GF W+ ++KR+ +
Sbjct: 75 LKLAIFMMLLTAVGVYINNSLL---LLNSYWLPLLMPTLGFFWGWAWL---LKKRRDEFE 128
Query: 181 RAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFE 240
+ +PDAL++++ V +G SI Q++ V + + + + L + F+
Sbjct: 129 QTFPDALNIMMSAVTAGESIMQSISYVGKTLDNKVGAV---FQDMGERLKLGEPPEQVFK 185
Query: 241 NFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV 300
+ + G + + L+ R ++ +K A + +L+
Sbjct: 186 RASKHYPYPTFLFFVVTIRANMSRGGQLKPVMARLIRVLVDSRTLDKKKSAMTSEARLSA 245
Query: 301 PMIIFFLPVLILVII 315
++ LP + +V +
Sbjct: 246 KIVAS-LPFIFMVFL 259
>gi|301068122|ref|YP_003786893.1| hypothetical protein BACI_pCIXO100800 [Bacillus anthracis CI]
gi|300379212|gb|ADK08115.1| conserved hypothetical protein [Bacillus cereus biovar anthracis
str. CI]
Length = 288
Score = 63.7 bits (154), Expect = 4e-08, Method: Composition-based stats.
Identities = 49/270 (18%), Positives = 107/270 (39%), Gaps = 28/270 (10%)
Query: 66 DSASSRLRTRDSKSLRNFVKKLNLKAILVD--ENIVNKLRAAGFRSEYSLNILLVVRLVV 123
++A + ++ + + L+ K + + E I KL AG + L +++
Sbjct: 36 ENAKRIEKKNLNQMMLAPFQSLSHKYLTEEKKEQIQKKLEEAGL--DTKPEEYLKMKVAY 93
Query: 124 PIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAW 183
P+IF + +I +D L +LI + + P + +++ + K
Sbjct: 94 PVIFTSVFLICTVFHDYYL-------FKVGVLISPLLYFYPDYLLKKRIKQAIEARKFEL 146
Query: 184 PDALDLLLICVESGISIDQ---ALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFE 240
P+ L +L +++ +++ A + L+ E+ E+ + F
Sbjct: 147 PEYLIPMLQLLKTHTTLEAVKKAQIYAGRHLRPYVSTLTAEL-----EMYAGSD--QPFR 199
Query: 241 NFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV 300
NF V T AL Q+ + T SLR++ ++ + R ++ E + K
Sbjct: 200 NFAAALNSPEVNTFTIALQQAQK--TDKVQSLRIMDAQIKMMRELKHENYNRLIQNK--- 254
Query: 301 PMII--FFLPVLILVIIGPAILSIIDTMKD 328
PM + F + V+ +++ P ++ I M+
Sbjct: 255 PMEMNKFNVAVIGCIVMYPMVIVIQSLMQG 284
>gi|51891535|ref|YP_074226.1| putative integral membrane protein [Symbiobacterium thermophilum
IAM 14863]
gi|51855224|dbj|BAD39382.1| putative integral membrane protein [Symbiobacterium thermophilum
IAM 14863]
Length = 270
Score = 63.7 bits (154), Expect = 4e-08, Method: Composition-based stats.
Identities = 34/201 (16%), Positives = 76/201 (37%), Gaps = 7/201 (3%)
Query: 131 GIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLL 190
+ + L ++ G + L ++ +++ +AL L
Sbjct: 41 ALRLVPVAAFALVLLLTGSWLTALISLPAGVLLLATVRDTLARREAQALRDQLQEALLSL 100
Query: 191 LICVESGISIDQALRRVAEDIGGQSVP---LSEEMLLTIAELSFLPNRQVAFENFYNRTQ 247
+++G S+ +AL+R A ++ L E+ LT E+ A + R
Sbjct: 101 ATSLKAGQSLPRALQRCAVELSRLHPGGGGLIREIELTAREVELGTPVDEALLDLRARVP 160
Query: 248 MDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFL 307
++ + AL+ + R G +I + + + +E E + + K T I+ +
Sbjct: 161 LEELAALVDALVTTRRRGGNIVEVMGNVAQMVADRLAVEREIQVLTAQ-KRTEAAILAMI 219
Query: 308 PV---LILVIIGPAILSIIDT 325
P+ L++ + PA L++
Sbjct: 220 PLGIYLVVRVTNPAYLAVFHA 240
>gi|124486353|ref|YP_001030969.1| hypothetical protein Mlab_1538 [Methanocorpusculum labreanum Z]
gi|124363894|gb|ABN07702.1| type II secretion system protein [Methanocorpusculum labreanum Z]
Length = 601
Score = 63.7 bits (154), Expect = 4e-08, Method: Composition-based stats.
Identities = 29/174 (16%), Positives = 75/174 (43%), Gaps = 5/174 (2%)
Query: 90 KAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLR 149
K I +NI+ L ++ ++ + ++ ++ ++G+ WI G + +
Sbjct: 313 KQINARKNIIKYLNILRHPIKFFISDYTIPGIIGVLLASLVGVSWITGTFAKIFPSMTME 372
Query: 150 VGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAE 209
V I+I + P + + ++ + +++ P+ L + + G+++ A+ ++
Sbjct: 373 VLVCIII--IAASLPLMMAYEIRRRYVTKVEKQLPEFLREIADMRDIGMTLQGAISMIS- 429
Query: 210 DIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDR 263
G ++ LS E+ + ELS+ + A R + V+ A L+++
Sbjct: 430 --GNKTGVLSSEIKIVTKELSYGAHLSNALVRMEERIGLVSVKRAISLLVKASE 481
Score = 39.1 bits (90), Expect = 0.90, Method: Composition-based stats.
Identities = 36/240 (15%), Positives = 83/240 (34%), Gaps = 21/240 (8%)
Query: 89 LKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIW------------IF 136
L IL + + N LR+A ++ +++ ++V + I+ + +
Sbjct: 8 LDKILFNTKLENALRSA--HITVPVDQYMMLTILVTVFTGIMTALIGVLITVMGITIPVI 65
Query: 137 GYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVES 196
+ + + I + + P + Q R++ I++ P A+ + +
Sbjct: 66 SFLPVWILIIISCILIPIGVFICFYYYPVL----EAQGRKNKIEQDLPFAITYMQALSST 121
Query: 197 GISIDQALRRVAEDIGGQSVPLSEEMLLTIAELS-FLPNRQVAFENFYNRTQMDCVRNAT 255
I++ + R V + +S E L + ++ F + A EN T + R
Sbjct: 122 -ITLYEIFRSV-YEAADLYGEVSRECGLIVRDVELFGEDLLTAIENTIKITPSENFRELL 179
Query: 256 QALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVII 315
L R G ++ + R + + L V + F + ++I+
Sbjct: 180 NDLALVYRSGGNMRNFFNSKSESYREIARQQLDALLQFLEMIAEVYVTAFVAGPIAIMIM 239
>gi|121599706|ref|YP_993002.1| Flp pilus assembly protein TadB [Burkholderia mallei SAVP1]
gi|124386517|ref|YP_001026334.1| hypothetical protein BMA10229_A0332 [Burkholderia mallei NCTC
10229]
gi|126449976|ref|YP_001080392.1| type II secretion system protein [Burkholderia mallei NCTC 10247]
gi|121228516|gb|ABM51034.1| Flp pilus assembly protein TadB [Burkholderia mallei SAVP1]
gi|124294537|gb|ABN03806.1| putative membrane protein [Burkholderia mallei NCTC 10229]
gi|126242846|gb|ABO05939.1| type II secretion system protein [Burkholderia mallei NCTC 10247]
Length = 331
Score = 63.7 bits (154), Expect = 4e-08, Method: Composition-based stats.
Identities = 27/149 (18%), Positives = 54/149 (36%), Gaps = 7/149 (4%)
Query: 169 SNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAE 228
L+ + + +PDALDL++ V +GI + QA+ + P+
Sbjct: 144 RILIGRFKQRFLSVFPDALDLIIRAVRAGIPVAQAIGTAGRESEE---PVRATFRAMGDA 200
Query: 229 LSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAE 288
L + + E R Q+ L+ G ++ ++L L R+ R + +
Sbjct: 201 LRVGADLKDVLEQQAERLQLADFSFFGVCLVLQRETGGNLTETLENLSGIIRTRRDIRMK 260
Query: 289 KKA----ASLGPKLTVPMIIFFLPVLILV 313
+A + K+ + L +V
Sbjct: 261 TRALTAEGRIASKIIAAVPFAIAGFLFVV 289
>gi|53719427|ref|YP_108413.1| hypothetical protein BPSL1814 [Burkholderia pseudomallei K96243]
gi|76811973|ref|YP_333440.1| hypothetical protein BURPS1710b_2045 [Burkholderia pseudomallei
1710b]
gi|126441337|ref|YP_001058912.1| type II secretion system protein [Burkholderia pseudomallei 668]
gi|134282297|ref|ZP_01769002.1| type II secretion system protein [Burkholderia pseudomallei 305]
gi|217421505|ref|ZP_03453009.1| type II secretion system protein [Burkholderia pseudomallei 576]
gi|226196396|ref|ZP_03791978.1| type II secretion system protein [Burkholderia pseudomallei
Pakistan 9]
gi|237812169|ref|YP_002896620.1| type II secretion system protein [Burkholderia pseudomallei
MSHR346]
gi|254259104|ref|ZP_04950158.1| type II secretion system protein [Burkholderia pseudomallei 1710a]
gi|52209841|emb|CAH35813.1| putative membrane protein [Burkholderia pseudomallei K96243]
gi|76581426|gb|ABA50901.1| putative membrane protein [Burkholderia pseudomallei 1710b]
gi|126220830|gb|ABN84336.1| type II secretion system protein [Burkholderia pseudomallei 668]
gi|134246335|gb|EBA46424.1| type II secretion system protein [Burkholderia pseudomallei 305]
gi|217395247|gb|EEC35265.1| type II secretion system protein [Burkholderia pseudomallei 576]
gi|225931613|gb|EEH27618.1| type II secretion system protein [Burkholderia pseudomallei
Pakistan 9]
gi|237506496|gb|ACQ98814.1| type II secretion system protein [Burkholderia pseudomallei
MSHR346]
gi|254217793|gb|EET07177.1| type II secretion system protein [Burkholderia pseudomallei 1710a]
Length = 331
Score = 63.7 bits (154), Expect = 4e-08, Method: Composition-based stats.
Identities = 27/149 (18%), Positives = 54/149 (36%), Gaps = 7/149 (4%)
Query: 169 SNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAE 228
L+ + + +PDALDL++ V +GI + QA+ + P+
Sbjct: 144 RILIGRFKQRFLSVFPDALDLIIRAVRAGIPVAQAIGTAGRESEE---PVRATFRAMGDA 200
Query: 229 LSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAE 288
L + + E R Q+ L+ G ++ ++L L R+ R + +
Sbjct: 201 LRVGADLKDVLEQQAERLQLADFSFFGVCLVLQRETGGNLTETLENLSGIIRTRRDIRMK 260
Query: 289 KKA----ASLGPKLTVPMIIFFLPVLILV 313
+A + K+ + L +V
Sbjct: 261 TRALTAEGRIASKIIAAVPFAIAGFLFVV 289
>gi|330819178|ref|YP_004348040.1| type II secretion system protein [Burkholderia gladioli BSR3]
gi|327371173|gb|AEA62528.1| type II secretion system protein [Burkholderia gladioli BSR3]
Length = 282
Score = 63.7 bits (154), Expect = 4e-08, Method: Composition-based stats.
Identities = 31/166 (18%), Positives = 70/166 (42%), Gaps = 3/166 (1%)
Query: 149 RVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVA 208
V + AP ++ + ++R + ++R PD L + + +G S A+ V
Sbjct: 77 SVLLAGIALVGALMAPRRVLAIMRKRRIAMLERQLPDVLLMTAGALRAGASFAVAMESVV 136
Query: 209 EDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSI 268
+ P+S E+ L + EL + +A +N R + T A+ S G ++
Sbjct: 137 SE---APAPISGELELLMRELRLGIDLDIAMQNIERRIPVPDFLMVTAAVTISREVGGNL 193
Query: 269 GDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVI 314
++L + ++ ME + +A + ++ ++ L++V+
Sbjct: 194 AEALESVARTLGAKLQMEGKIRALTSQGRMQGIVMTLLPLGLMVVL 239
>gi|255316491|ref|ZP_05358074.1| hypothetical protein CdifQCD-7_19182 [Clostridium difficile
QCD-76w55]
Length = 298
Score = 63.7 bits (154), Expect = 4e-08, Method: Composition-based stats.
Identities = 38/259 (14%), Positives = 102/259 (39%), Gaps = 24/259 (9%)
Query: 51 EREILRKQQITSLQKDSASSRLRTRDSKSLRNF--------VKKLNLKAILVDENIVNKL 102
E E L K+++ LQK + ++ + + + K++ K L + L
Sbjct: 33 EDESLHKKRLKQLQKTEKRKSEQEKNKEFIEKITTPVSTYILPKIDKKKDLT--QLEKDL 90
Query: 103 RAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFC 162
+ + ++ + + + + I+ +I+G+I + + +L G + F
Sbjct: 91 KMCNWDKYFTPATFISLDITMKILAVIIGLIVYSIAN----------LILALLWGSIIFF 140
Query: 163 APSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEM 222
+ + N V++++ I +PD ++++ + S +++ +A+ +G + L++E
Sbjct: 141 ILNFLLKNAVKEKKLKILSGFPDFINVVQGFLVSDMTLVKAIESSIPYVGTEWSKLAQEF 200
Query: 223 LLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSE 282
++ S +++ E Y + + VR + + G +I + +
Sbjct: 201 VID----SKTNSQEKCIEIIYEKIDIFEVRELWSLIKLNSEQGINIKECFSNQAKKITDL 256
Query: 283 RLMEAEKKAASLGPKLTVP 301
+ KK + T+
Sbjct: 257 NMELIHKKINTRQIMATLV 275
>gi|315649138|ref|ZP_07902229.1| Type II secretion system F domain protein [Paenibacillus vortex
V453]
gi|315275454|gb|EFU38811.1| Type II secretion system F domain protein [Paenibacillus vortex
V453]
Length = 285
Score = 63.7 bits (154), Expect = 4e-08, Method: Composition-based stats.
Identities = 23/122 (18%), Positives = 49/122 (40%), Gaps = 4/122 (3%)
Query: 162 CAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSV----P 217
P W ++ +R+ ++ + AL L + +G S++ R +D+
Sbjct: 87 MIPKFWRRFMLDRRRKTLNLHFKQALYSLSSSLSAGRSVENGFRDAVQDLLLLDPGASSD 146
Query: 218 LSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVS 277
L E+ + ++ L + +VA ++F R M+ + N R G + + +R S
Sbjct: 147 LIFELKVIVSRLEYGEPIEVALQDFARRAGMEDITNFADVFSTCKRTGGDLVEVVRRTSS 206
Query: 278 ET 279
Sbjct: 207 VI 208
>gi|302530824|ref|ZP_07283166.1| predicted protein [Streptomyces sp. AA4]
gi|302439719|gb|EFL11535.1| predicted protein [Streptomyces sp. AA4]
Length = 231
Score = 63.7 bits (154), Expect = 4e-08, Method: Composition-based stats.
Identities = 32/136 (23%), Positives = 55/136 (40%), Gaps = 6/136 (4%)
Query: 187 LDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRT 246
LDLL C+ +G+ + AL VA G + T L+ + A+ R
Sbjct: 94 LDLLAACLRAGMPVPTALAAVA---PGAPPDTENALHATANLLALGSDAAPAWAPLRAR- 149
Query: 247 QMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFF 306
A ++ R G ++ + L R +EAE++A G L +P+ + F
Sbjct: 150 --PGFAELAVAATRTARSGAALASTADDLARRVRDGLGVEAEERAERAGVALAMPVGLCF 207
Query: 307 LPVLILVIIGPAILSI 322
LP + + P +L +
Sbjct: 208 LPAFFALGVLPVVLGL 223
>gi|170701755|ref|ZP_02892691.1| type II secretion system protein [Burkholderia ambifaria IOP40-10]
gi|170133338|gb|EDT01730.1| type II secretion system protein [Burkholderia ambifaria IOP40-10]
Length = 327
Score = 63.7 bits (154), Expect = 4e-08, Method: Composition-based stats.
Identities = 33/177 (18%), Positives = 56/177 (31%), Gaps = 5/177 (2%)
Query: 151 GAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAED 210
I G W+ + + +R+ I R P LD ++ V G S+ A +
Sbjct: 125 LGGIAALVCGAALLVFWLVSRIHRRRQMIVRQLPSFLDGIVRLVTLGNSVPAAFQAA--- 181
Query: 211 IGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGD 270
+ PL + L A + N L S RYG
Sbjct: 182 LQTTEAPLRGCLDHVSRMLRTGVEIDRAMMHIANVYHTKEFELVGSVLRLSVRYGGRADI 241
Query: 271 SLRVLVSETRSERLMEAEKKAASLGPKLT--VPMIIFFLPVLILVIIGPAILSIIDT 325
L + + R E E +A S +L+ V +++ ++ P L +
Sbjct: 242 MLDRMSTFMRDLEQAERELEAMSSETRLSAWVLVMLPIAIGSFVIATNPLYLQSMWN 298
>gi|190015732|ref|YP_001967248.1| hypothetical protein BcAH187_pCER270_0105 [Bacillus cereus]
gi|208702198|ref|YP_002267399.1| hypothetical protein BCH308197_A0144 [Bacillus cereus H3081.97]
gi|217956758|ref|YP_002335852.1| hypothetical protein BCAH187_C0116 [Bacillus cereus AH187]
gi|116584639|gb|ABK00756.1| hypothetical protein BcAH187_pCER270_0105 [Bacillus cereus]
gi|208658053|gb|ACI30423.1| conserved hypothetical protein [Bacillus cereus H3081.97]
gi|217068513|gb|ACJ82761.1| conserved hypothetical protein [Bacillus cereus AH187]
Length = 288
Score = 63.7 bits (154), Expect = 4e-08, Method: Composition-based stats.
Identities = 59/317 (18%), Positives = 123/317 (38%), Gaps = 37/317 (11%)
Query: 16 VAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTR 75
+A A+ +F ++Y V L S + + + ++A +
Sbjct: 1 MATILALVVFVVMYWVFSTFLQSKKDSG---------------SLLTNYVENAKRIEKKN 45
Query: 76 DSKSLRNFVKKLNLKAILVDEN--IVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGII 133
++ + + L+ K + ++ I KL AG + L +++ PIIF + +I
Sbjct: 46 LNQMMLAPFQSLSHKYLTEEKKELIQKKLEEAGL--DTKPEEYLKMKVAYPIIFTSVFLI 103
Query: 134 WIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLIC 193
+D L +LI + + P + +++ + K P+ L +L
Sbjct: 104 CTVFHDYYL-------FKVGVLISPLLYFYPDYLLKRRIKQAIEARKFELPEYLIPMLQL 156
Query: 194 VESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRN 253
+++ +++ + A+ G+ L + AEL F NF V
Sbjct: 157 LKTHTTLEA--VKKAQIYAGRH--LRPYVSTLTAELEMYAGSDQPFRNFAAALNSPEVNT 212
Query: 254 ATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMII--FFLPVLI 311
T AL Q+ + T SLR++ ++ + R ++ E + K PM + F + V+
Sbjct: 213 FTIALQQAQK--TDKVQSLRIMDAQIKMMRELKHENYNRLIQNK---PMEMNKFNVAVIG 267
Query: 312 LVIIGPAILSIIDTMKD 328
++I P ++ I M+
Sbjct: 268 CIVIYPMVIVIQSLMQG 284
>gi|254178308|ref|ZP_04884963.1| type II secretion system protein [Burkholderia mallei ATCC 10399]
gi|160699347|gb|EDP89317.1| type II secretion system protein [Burkholderia mallei ATCC 10399]
Length = 331
Score = 63.7 bits (154), Expect = 4e-08, Method: Composition-based stats.
Identities = 27/149 (18%), Positives = 54/149 (36%), Gaps = 7/149 (4%)
Query: 169 SNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAE 228
L+ + + +PDALDL++ V +GI + QA+ + P+
Sbjct: 144 RILIGRFKQRFLSVFPDALDLIIRAVRAGIPVAQAIGTAGRESEE---PVRATFRAMGDA 200
Query: 229 LSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAE 288
L + + E R Q+ L+ G ++ ++L L R+ R + +
Sbjct: 201 LRVGADLKDVLEQQAERLQLADFSFFGVCLVLQRETGGNLTETLENLSGIIRTRRDIRMK 260
Query: 289 KKA----ASLGPKLTVPMIIFFLPVLILV 313
+A + K+ + L +V
Sbjct: 261 TRALTAEGRIASKIIAAVPFAIAGFLFVV 289
>gi|313765311|gb|EFS36675.1| type II secretion system F domain protein [Propionibacterium acnes
HL013PA1]
gi|313772774|gb|EFS38740.1| type II secretion system F domain protein [Propionibacterium acnes
HL074PA1]
gi|313806749|gb|EFS45254.1| type II secretion system F domain protein [Propionibacterium acnes
HL087PA2]
gi|313810914|gb|EFS48628.1| type II secretion system F domain protein [Propionibacterium acnes
HL083PA1]
gi|313815410|gb|EFS53124.1| type II secretion system F domain protein [Propionibacterium acnes
HL059PA1]
gi|313817518|gb|EFS55232.1| type II secretion system F domain protein [Propionibacterium acnes
HL046PA2]
gi|313826451|gb|EFS64165.1| type II secretion system F domain protein [Propionibacterium acnes
HL063PA1]
gi|313828808|gb|EFS66522.1| type II secretion system F domain protein [Propionibacterium acnes
HL063PA2]
gi|313831679|gb|EFS69393.1| type II secretion system F domain protein [Propionibacterium acnes
HL007PA1]
gi|313840370|gb|EFS78084.1| type II secretion system F domain protein [Propionibacterium acnes
HL086PA1]
gi|314916037|gb|EFS79868.1| type II secretion system F domain protein [Propionibacterium acnes
HL005PA4]
gi|314917189|gb|EFS81020.1| type II secretion system F domain protein [Propionibacterium acnes
HL050PA1]
gi|314921688|gb|EFS85519.1| type II secretion system F domain protein [Propionibacterium acnes
HL050PA3]
gi|314930989|gb|EFS94820.1| type II secretion system F domain protein [Propionibacterium acnes
HL067PA1]
gi|314955080|gb|EFS99486.1| type II secretion system F domain protein [Propionibacterium acnes
HL027PA1]
gi|314959120|gb|EFT03222.1| type II secretion system F domain protein [Propionibacterium acnes
HL002PA1]
gi|314961393|gb|EFT05494.1| type II secretion system F domain protein [Propionibacterium acnes
HL002PA2]
gi|314969714|gb|EFT13812.1| type II secretion system F domain protein [Propionibacterium acnes
HL037PA1]
gi|314977020|gb|EFT21115.1| type II secretion system F domain protein [Propionibacterium acnes
HL045PA1]
gi|314989056|gb|EFT33147.1| type II secretion system F domain protein [Propionibacterium acnes
HL005PA3]
gi|315082691|gb|EFT54667.1| type II secretion system F domain protein [Propionibacterium acnes
HL027PA2]
gi|315087885|gb|EFT59861.1| type II secretion system F domain protein [Propionibacterium acnes
HL072PA1]
gi|315099515|gb|EFT71491.1| type II secretion system F domain protein [Propionibacterium acnes
HL059PA2]
gi|315101978|gb|EFT73954.1| type II secretion system F domain protein [Propionibacterium acnes
HL046PA1]
gi|315110099|gb|EFT82075.1| type II secretion system F domain protein [Propionibacterium acnes
HL030PA2]
gi|327331302|gb|EGE73041.1| putative bacterial type II secretion system protein F domain
protein [Propionibacterium acnes HL096PA2]
gi|327333935|gb|EGE75652.1| putative bacterial type II secretion system protein F domain
protein [Propionibacterium acnes HL096PA3]
gi|327450235|gb|EGE96889.1| type II secretion system F domain protein [Propionibacterium acnes
HL043PA2]
gi|327454504|gb|EGF01159.1| type II secretion system F domain protein [Propionibacterium acnes
HL087PA3]
gi|327456573|gb|EGF03228.1| type II secretion system F domain protein [Propionibacterium acnes
HL083PA2]
gi|328756268|gb|EGF69884.1| type II secretion system F domain protein [Propionibacterium acnes
HL087PA1]
gi|328757049|gb|EGF70665.1| type II secretion system F domain protein [Propionibacterium acnes
HL025PA2]
gi|328761171|gb|EGF74714.1| putative bacterial type II secretion system protein F domain
protein [Propionibacterium acnes HL099PA1]
Length = 147
Score = 63.7 bits (154), Expect = 4e-08, Method: Composition-based stats.
Identities = 32/144 (22%), Positives = 65/144 (45%), Gaps = 6/144 (4%)
Query: 180 KRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAF 239
P+AL +L +E+G+ + A+ VAE + G P +E++ + L+ A+
Sbjct: 6 AAQLPEALLMLSSAMEAGLPLRSAVTTVAESLEG---PCAEDLRRLASSLAAGVPDSRAW 62
Query: 240 ENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLT 299
+ + ++ R+ Q + ++ G I + L ++ + + EKKA G
Sbjct: 63 NDLAS---VEVWRDPAQDVSRAVDSGEGISELLSAHAAQLQVAAAEKTEKKARKAGVDAI 119
Query: 300 VPMIIFFLPVLILVIIGPAILSII 323
P++ LP +LV + P I ++
Sbjct: 120 GPLVCCHLPAFLLVGVVPIIAGMV 143
>gi|312794257|ref|YP_004027180.1| type II secretion system f domain [Caldicellulosiruptor
kristjanssonii 177R1B]
gi|312181397|gb|ADQ41567.1| Type II secretion system F domain [Caldicellulosiruptor
kristjanssonii 177R1B]
Length = 264
Score = 63.7 bits (154), Expect = 4e-08, Method: Composition-based stats.
Identities = 33/206 (16%), Positives = 76/206 (36%), Gaps = 5/206 (2%)
Query: 117 LVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQ 176
++ V I ++ I +L + G ++L P +S +K +
Sbjct: 56 FALQDVYDFISIVFTFFLISCLLFVLYARISILFGLILLPSVTTM--PIAVLSIRTRKFK 113
Query: 177 SSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQ 236
K+ D ++ ++ + G+ ++Q L +AE P +E+ L + + +
Sbjct: 114 KQFKQDLLDTIETMIQGFKCGLVVEQVLEYIAESQENLVTPFIKEINLRLL---AGQSLK 170
Query: 237 VAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGP 296
A ++T + + I ++L VL E E E A L
Sbjct: 171 EASLQVSSKTLSSEFERMCRIFNLRSVTISHIAETLSVLAENIYEEEKTEIETLADKLNV 230
Query: 297 KLTVPMIIFFLPVLILVIIGPAILSI 322
+ T+ M+ ++ ++++ P ++
Sbjct: 231 RFTLIMLAGYVIPFLILVTYPLVMMF 256
>gi|126452248|ref|YP_001066154.1| type II secretion system protein [Burkholderia pseudomallei 1106a]
gi|242314755|ref|ZP_04813771.1| type II secretion system protein [Burkholderia pseudomallei 1106b]
gi|126225890|gb|ABN89430.1| type II secretion system protein [Burkholderia pseudomallei 1106a]
gi|242137994|gb|EES24396.1| type II secretion system protein [Burkholderia pseudomallei 1106b]
Length = 331
Score = 63.7 bits (154), Expect = 4e-08, Method: Composition-based stats.
Identities = 27/149 (18%), Positives = 54/149 (36%), Gaps = 7/149 (4%)
Query: 169 SNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAE 228
L+ + + +PDALDL++ V +GI + QA+ + P+
Sbjct: 144 RILIGRFKQRFLSVFPDALDLIIRAVRAGIPVAQAIGTAGRESEE---PVRATFRAMGDA 200
Query: 229 LSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAE 288
L + + E R Q+ L+ G ++ ++L L R+ R + +
Sbjct: 201 LRVGADLKDVLEQQAERLQLADFSFFGVCLVLQRETGGNLTETLENLSGIIRTRRDIRMK 260
Query: 289 KKA----ASLGPKLTVPMIIFFLPVLILV 313
+A + K+ + L +V
Sbjct: 261 TRALTAEGRIASKIIAAVPFAIAGFLFVV 289
>gi|229816458|ref|ZP_04446759.1| hypothetical protein COLINT_03512 [Collinsella intestinalis DSM
13280]
gi|229808000|gb|EEP43801.1| hypothetical protein COLINT_03512 [Collinsella intestinalis DSM
13280]
Length = 247
Score = 63.7 bits (154), Expect = 4e-08, Method: Composition-based stats.
Identities = 26/144 (18%), Positives = 54/144 (37%), Gaps = 3/144 (2%)
Query: 173 QKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFL 232
+K++ ++ A +A L + SG+S+ QA+R V P+ E L A+++
Sbjct: 67 RKKRERLEGAMVEAFGALAASMASGLSLAQAMRYVGSHAQE---PVRTEFLRAEAQVACG 123
Query: 233 PNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAA 292
A + R + T AL S R G + D L R + +
Sbjct: 124 AGMTEALDELVERLHAPGLDFVTLALKVSRRTGAPLSDVLGEATRLVRERVELRRKLDVR 183
Query: 293 SLGPKLTVPMIIFFLPVLILVIIG 316
+ +++ ++ ++ +
Sbjct: 184 TAQVRMSARLVAGMPVAMVAFLAA 207
>gi|254198194|ref|ZP_04904616.1| type II secretion system protein [Burkholderia pseudomallei S13]
gi|169654935|gb|EDS87628.1| type II secretion system protein [Burkholderia pseudomallei S13]
Length = 331
Score = 63.4 bits (153), Expect = 4e-08, Method: Composition-based stats.
Identities = 27/149 (18%), Positives = 54/149 (36%), Gaps = 7/149 (4%)
Query: 169 SNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAE 228
L+ + + +PDALDL++ V +GI + QA+ + P+
Sbjct: 144 RILIGRFKQRFLSVFPDALDLIIRAVRAGIPVAQAIGTAGRESEE---PVRATFRAMGDA 200
Query: 229 LSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAE 288
L + + E R Q+ L+ G ++ ++L L R+ R + +
Sbjct: 201 LRVGADLKDVLEQQAERLQLADFSFFGVCLVLQRETGGNLTETLENLSGIIRTRRDIRMK 260
Query: 289 KKA----ASLGPKLTVPMIIFFLPVLILV 313
+A + K+ + L +V
Sbjct: 261 TRALTAEGRIASKIIAAVPFAIAGFLFVV 289
>gi|330963435|gb|EGH63695.1| hypothetical protein PSYAC_02057 [Pseudomonas syringae pv.
actinidiae str. M302091]
Length = 295
Score = 63.4 bits (153), Expect = 4e-08, Method: Composition-based stats.
Identities = 31/185 (16%), Positives = 67/185 (36%), Gaps = 8/185 (4%)
Query: 127 FLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDA 186
L L + + + ++ + V V++S ++R + + P
Sbjct: 73 GLALTLYALLIVLGYWLGGGLGAISMLLAVPLVV----RVFVSWRYERRVRRMIQQLPQL 128
Query: 187 LDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRT 246
LD + ++SG ++ A V I PL + M + + A +F
Sbjct: 129 LDHTVRSLKSGRTLADA---VLHGIEATDQPLKDGMSRIELNVQLGVSLPDAVRDFAELY 185
Query: 247 QMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFF 306
+ D L + RYG + + + L+ R + +A + ++T +++
Sbjct: 186 ERDEFHLFALGLRVNHRYGGNASELMENLIKLIRDREQAGRQLRAMTGETRMTA-IVLGL 244
Query: 307 LPVLI 311
LPV +
Sbjct: 245 LPVSM 249
>gi|225871557|ref|YP_002752915.1| hypothetical protein BCA_A0068 [Bacillus cereus 03BB102]
gi|225785622|gb|ACO25840.1| conserved hypothetical protein [Bacillus cereus 03BB102]
Length = 240
Score = 63.4 bits (153), Expect = 4e-08, Method: Composition-based stats.
Identities = 50/235 (21%), Positives = 95/235 (40%), Gaps = 20/235 (8%)
Query: 96 ENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVIL 155
E I KL AG + L +++ PIIF + +I +D L +L
Sbjct: 20 EQIQKKLEEAGL--DTKPEEYLKMKVAYPIIFTSVFLICTVFHDYYL-------FKVGVL 70
Query: 156 IGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQS 215
I + + P + +++ + K P+ L +L +++ +++ + A+ G+
Sbjct: 71 ISPLLYFYPDYLLKKRIKQAIEARKFELPEYLIPMLQLLKTHTTLEA--VKKAQIYAGRH 128
Query: 216 VPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVL 275
L + AEL F NF V T AL Q+ + T SLR++
Sbjct: 129 --LRPYVSTLTAELEMYAGSDQPFRNFAAALNSPEVNTFTIALQQAQK--TDKVQSLRIM 184
Query: 276 VSETRSERLMEAEKKAASLGPKLTVPMII--FFLPVLILVIIGPAILSIIDTMKD 328
++ + R ++ E + K PM + F + V+ ++I P ++ I M+
Sbjct: 185 DAQIKMMRELKHENYNRLIQNK---PMEMNKFNVAVIGCIVIYPMVIVIQSLMQG 236
>gi|78062902|ref|YP_372810.1| type II secretion system protein [Burkholderia sp. 383]
gi|77970787|gb|ABB12166.1| type II secretion system protein [Burkholderia sp. 383]
Length = 325
Score = 63.4 bits (153), Expect = 4e-08, Method: Composition-based stats.
Identities = 59/301 (19%), Positives = 108/301 (35%), Gaps = 25/301 (8%)
Query: 17 AITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRD 76
A AV F++I A+ + L R +R R ++++ T
Sbjct: 4 ADLFAVGAFAMILAIGLVL---SSLFDRASHTPAQRIRARMRRLSPSLAGRDGHASATPG 60
Query: 77 SKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIF 136
++ L+A L + ++ VR+V + I G I
Sbjct: 61 VALFNLERRQGRLRAWLQRRVTRVR----------AVGGKGGVRIV--VASTIAGAIAAI 108
Query: 137 GYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVES 196
KL+ P LR + V A + + R A+PDA+D+++ V +
Sbjct: 109 VAVKLIGPPGFLRPLIYAGLPLVAMRASYRALVERFRIR---FLEAFPDAIDVIVRAVRA 165
Query: 197 GISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQ 256
GI + QA+ V + G + P+ L + + +R + T
Sbjct: 166 GIPVTQAISMVGD---GAAEPVRATFRSMGDSLRVGADLKDVLTQAADRLMIADFSFFTV 222
Query: 257 ALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMI----IFFLPVLIL 312
L+ G S+G++L L S R+ R + + +A + ++T +I + L L
Sbjct: 223 YLLLQRETGGSLGETLDELSSIIRTRRDIRLKTRALTAEGRITTNIISAVPFVMIGALFL 282
Query: 313 V 313
V
Sbjct: 283 V 283
>gi|115351459|ref|YP_773298.1| type II secretion system protein [Burkholderia ambifaria AMMD]
gi|115281447|gb|ABI86964.1| type II secretion system protein [Burkholderia ambifaria AMMD]
Length = 322
Score = 63.4 bits (153), Expect = 4e-08, Method: Composition-based stats.
Identities = 33/177 (18%), Positives = 56/177 (31%), Gaps = 5/177 (2%)
Query: 151 GAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAED 210
I G W+ + + +R+ I R P LD ++ V G S+ A +
Sbjct: 120 LGGIAALVCGAALLVFWLVSRIHRRRQMIVRQLPSFLDGIVRLVTLGNSVPAAFQAA--- 176
Query: 211 IGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGD 270
+ PL + L A + N L S RYG
Sbjct: 177 LQTTEAPLRGCLDHVSRMLRTGVEIDRAMMHIANVYHTKEFELVGSVLRLSVRYGGRADI 236
Query: 271 SLRVLVSETRSERLMEAEKKAASLGPKLT--VPMIIFFLPVLILVIIGPAILSIIDT 325
L + + R E E +A S +L+ V +++ ++ P L +
Sbjct: 237 MLDRMSTFMRDLEQAERELEAMSSETRLSAWVLVMLPIAIGSFVIATNPLYLQSMWN 293
>gi|167919044|ref|ZP_02506135.1| type II secretion system protein [Burkholderia pseudomallei BCC215]
Length = 216
Score = 63.4 bits (153), Expect = 4e-08, Method: Composition-based stats.
Identities = 27/149 (18%), Positives = 54/149 (36%), Gaps = 7/149 (4%)
Query: 169 SNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAE 228
L+ + + +PDALDL++ V +GI + QA+ + P+
Sbjct: 29 RILIGRFKQRFLSVFPDALDLIIRAVRAGIPVAQAIGTAGRESEE---PVRATFRAMGDA 85
Query: 229 LSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAE 288
L + + E R Q+ L+ G ++ ++L L R+ R + +
Sbjct: 86 LRVGADLKDVLEQQAERLQLADFSFFGVCLVLQRETGGNLTETLENLSGIIRTRRDIRMK 145
Query: 289 KKA----ASLGPKLTVPMIIFFLPVLILV 313
+A + K+ + L +V
Sbjct: 146 TRALTAEGRIASKIIAAVPFAIAGFLFVV 174
>gi|167911028|ref|ZP_02498119.1| type II secretion system protein [Burkholderia pseudomallei 112]
Length = 217
Score = 63.4 bits (153), Expect = 5e-08, Method: Composition-based stats.
Identities = 27/149 (18%), Positives = 54/149 (36%), Gaps = 7/149 (4%)
Query: 169 SNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAE 228
L+ + + +PDALDL++ V +GI + QA+ + P+
Sbjct: 30 RILIGRFKQRFLSVFPDALDLIIRAVRAGIPVAQAIGTAGRESEE---PVRATFRAMGDA 86
Query: 229 LSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAE 288
L + + E R Q+ L+ G ++ ++L L R+ R + +
Sbjct: 87 LRVGADLKDVLEQQAERLQLADFSFFGVCLVLQRETGGNLTETLENLSGIIRTRRDIRMK 146
Query: 289 KKA----ASLGPKLTVPMIIFFLPVLILV 313
+A + K+ + L +V
Sbjct: 147 TRALTAEGRIASKIIAAVPFAIAGFLFVV 175
>gi|260775649|ref|ZP_05884545.1| flp pilus assembly protein TadB [Vibrio coralliilyticus ATCC
BAA-450]
gi|260608065|gb|EEX34234.1| flp pilus assembly protein TadB [Vibrio coralliilyticus ATCC
BAA-450]
Length = 306
Score = 63.4 bits (153), Expect = 5e-08, Method: Composition-based stats.
Identities = 40/250 (16%), Positives = 97/250 (38%), Gaps = 16/250 (6%)
Query: 54 ILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSL 113
+L+ ++ KD + S + S+ + + + ++L+ L + + + + ++ S Y L
Sbjct: 19 LLQARRRRQYFKDVSHSSV----SQLVGDVGQAIDLRT-LEETSWLQQGKSRVISSYYQL 73
Query: 114 NILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQ 173
++++ II ++ I++ + +G ++ +G + L
Sbjct: 74 GSQPALKVIAIIILGLVVSIYV-NQTYFRVHQVAFSIGINLIFMLLGM-------NWLQA 125
Query: 174 KRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLP 233
+ + + A+PDAL +L V +G + Q+ V + G P+ +E L
Sbjct: 126 REKQHFEEAFPDALTMLASAVSAGEGLMQSFIFVGRTLDG---PVGKEFKKMGDRLQMGE 182
Query: 234 NRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAAS 293
+ F R + + G I + + L S R +E +K A +
Sbjct: 183 STNAVFSKSCQRFPYPSFHFFVITMRANIDRGGQIKEVVAKLNRVMFSARAIEKKKYALT 242
Query: 294 LGPKLTVPMI 303
+++ ++
Sbjct: 243 SEARVSAKIV 252
>gi|312883312|ref|ZP_07743038.1| putative Flp pilus assembly protein TadB [Vibrio caribbenthicus
ATCC BAA-2122]
gi|309368928|gb|EFP96454.1| putative Flp pilus assembly protein TadB [Vibrio caribbenthicus
ATCC BAA-2122]
Length = 304
Score = 63.4 bits (153), Expect = 5e-08, Method: Composition-based stats.
Identities = 30/190 (15%), Positives = 73/190 (38%), Gaps = 9/190 (4%)
Query: 126 IFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPD 185
+FL++ + ++ ++L + L + V++ + + +++ +PD
Sbjct: 81 LFLVISLTLLYFVNELF-FRLNLILSIVLIFPLECLL----FYKYMGGRKKKIFVENFPD 135
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
AL++L + SG SI A V + + + +E + L N E +
Sbjct: 136 ALNILSGAISSGQSIVHAFEYVGSQL---NNDVGKEFKIISERLLIGENPDDVLERSGIQ 192
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
A+ + G + D + + R +E +K + + +++ I+
Sbjct: 193 YPYLEYFFFISAIRINISRGGQLKDIINKINRLMFESRSLEKKKNSLTAESRMSAK-ILG 251
Query: 306 FLPVLILVII 315
LP+ L ++
Sbjct: 252 VLPIGFLFVL 261
>gi|284164351|ref|YP_003402630.1| type II secretion system F domain protein [Haloterrigena turkmenica
DSM 5511]
gi|284014006|gb|ADB59957.1| Type II secretion system F domain protein [Haloterrigena turkmenica
DSM 5511]
Length = 536
Score = 63.4 bits (153), Expect = 5e-08, Method: Composition-based stats.
Identities = 40/201 (19%), Positives = 81/201 (40%), Gaps = 10/201 (4%)
Query: 119 VRLVVPIIFLILGIIWIFGYDKLLEYPFQL---RVGAVILIGYVGFCAPSVWISNLVQKR 175
+ L + + + G++W F + + +L+ GF P ++R
Sbjct: 258 LSLAITVPIALAGVLWQFPAALEGGFDVAAIDDAIAVGLLVVLTGFAIP----YEGHRRR 313
Query: 176 QSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNR 235
+++ A PD LD L E+G+S+ A+ V G + PL E+ A++ + +
Sbjct: 314 IDAVEAAVPDLLDRLASVNEAGMSLVSAVDYVR---GSELGPLGAELDRVWADVQWGADL 370
Query: 236 QVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLG 295
Q AF R + L ++ ++ LR+ + ++R +E E+K A +
Sbjct: 371 QTAFARLERRVRTRTTARVVTLLTEAMNASGNLATVLRIAARQAAADRRLERERKQAMVE 430
Query: 296 PKLTVPMIIFFLPVLILVIIG 316
+ V + +I V+
Sbjct: 431 YTIVVYVSYLVFLFIIAVLAA 451
>gi|86740439|ref|YP_480839.1| type II secretion system protein [Frankia sp. CcI3]
gi|86567301|gb|ABD11110.1| type II secretion system protein [Frankia sp. CcI3]
Length = 301
Score = 63.4 bits (153), Expect = 5e-08, Method: Composition-based stats.
Identities = 39/217 (17%), Positives = 82/217 (37%), Gaps = 4/217 (1%)
Query: 111 YSLNILLVVRLVVPIIFLIL-GIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWIS 169
S L + + L+ ++ + +P+ + V +L+G VGF P + +
Sbjct: 88 RSPEAHLAEKATAAVAGLLFPSVVGLAFAAGGRPFPWAVPVAVALLLGVVGFLLPDLTVK 147
Query: 170 NLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAEL 229
+++ + + A L L+ + + G ++ AL A G L T E
Sbjct: 148 AEADRQRRAFRYALSAYLSLIQVLLAGGAGVETALTDAANVGNGWPFAAIRRALRTARET 207
Query: 230 SFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEK 289
+ VA Q+ + A+ + G + SL + R + +AE
Sbjct: 208 RI--SPWVALGQLGAELQISELTELADAVALAGTEGARVRQSLDAKAAALRVRQAQDAEA 265
Query: 290 KAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
A + ++++P ++ IL + PA+ I ++
Sbjct: 266 DANAATERMSIPGVL-IAIGFILFVFYPALTQITRSL 301
>gi|167815891|ref|ZP_02447571.1| type II secretion system protein [Burkholderia pseudomallei 91]
Length = 212
Score = 63.0 bits (152), Expect = 5e-08, Method: Composition-based stats.
Identities = 27/149 (18%), Positives = 54/149 (36%), Gaps = 7/149 (4%)
Query: 169 SNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAE 228
L+ + + +PDALDL++ V +GI + QA+ + P+
Sbjct: 25 RILIGRFKQRFLSVFPDALDLIIRAVRAGIPVAQAIGTAGRESEE---PVRATFRAMGDA 81
Query: 229 LSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAE 288
L + + E R Q+ L+ G ++ ++L L R+ R + +
Sbjct: 82 LRVGADLKDVLEQQAERLQLADFSFFGVCLVLQRETGGNLTETLENLSGIIRTRRDIRMK 141
Query: 289 KKA----ASLGPKLTVPMIIFFLPVLILV 313
+A + K+ + L +V
Sbjct: 142 TRALTAEGRIASKIIAAVPFAIAGFLFVV 170
>gi|283787696|ref|YP_003367561.1| tight adherence protein B [Citrobacter rodentium ICC168]
gi|282951150|emb|CBG90841.1| putative tight adherence protein B [Citrobacter rodentium ICC168]
Length = 300
Score = 63.0 bits (152), Expect = 5e-08, Method: Composition-based stats.
Identities = 35/189 (18%), Positives = 81/189 (42%), Gaps = 15/189 (7%)
Query: 125 IIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWP 184
II LI + F + ++P+ + + A++ I ++++ + RQ + + +
Sbjct: 78 IIVLIALVAGAFVNQQFFQFPYMVVLPAILFITVY-----TIYLQSKKLARQ-AFETGFA 131
Query: 185 DALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYN 244
+AL+++ V +G S+ + + + + G + EE + L + + F + Y
Sbjct: 132 EALNIIGGAVGAGNSLLHGIEQSGQKVSGI---VGEEFTIISQRLEIGEDVESVFMDSYE 188
Query: 245 RTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPK------L 298
R A++ + R G + + + L + RLM+ +K A + P+ +
Sbjct: 189 RLFYREYFFFVIAVLINMRGGGEVKEIVSHLAKLISNARLMDRQKLAKTAEPRASIKILM 248
Query: 299 TVPMIIFFL 307
+P+ FF
Sbjct: 249 VIPVGFFFF 257
>gi|206972976|ref|ZP_03233898.1| conserved hypothetical protein [Bacillus cereus AH1134]
gi|229194288|ref|ZP_04321127.1| hypothetical protein bcere0002_58720 [Bacillus cereus ATCC 10876]
gi|206731860|gb|EDZ49060.1| conserved hypothetical protein [Bacillus cereus AH1134]
gi|228589187|gb|EEK47167.1| hypothetical protein bcere0002_58720 [Bacillus cereus ATCC 10876]
Length = 288
Score = 63.0 bits (152), Expect = 6e-08, Method: Composition-based stats.
Identities = 60/317 (18%), Positives = 122/317 (38%), Gaps = 37/317 (11%)
Query: 16 VAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTR 75
++ AV +F ++Y + L S + + + ++A +
Sbjct: 1 MSTILAVVVFVVMYWIFSTFLQSKKDSG---------------SLLTNYVENAKRIEKKN 45
Query: 76 DSKSLRNFVKKLNLKAILVD--ENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGII 133
++ + + L+ K + + E I NKL AG + L +++ PIIF + +I
Sbjct: 46 LNQMMLAPFQSLSHKYLTEEKKEQIQNKLEEAGL--DTGPEEYLKMKVAYPIIFTSVFLI 103
Query: 134 WIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLIC 193
+D L L+ + + P + ++ + K P+ L +L
Sbjct: 104 CTVFHDYYL-------FKVGALMSPLLYFYPDYLLKKRSKQAIEARKFELPEYLIPMLQL 156
Query: 194 VESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRN 253
+++ +++ + AE G+ L + AEL F NF V
Sbjct: 157 LKTHTTLEA--VKKAEIYAGRH--LRPYVSTLTAELEMYAGSDQPFRNFAAALNSPEVNT 212
Query: 254 ATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMII--FFLPVLI 311
T AL Q+ + T SLR++ ++ + R ++ E + K PM + F + V+
Sbjct: 213 FTIALQQAQK--TDKVQSLRIMDAQIKMMRELKHENYNRLIQNK---PMEMNKFNVAVIG 267
Query: 312 LVIIGPAILSIIDTMKD 328
++I P ++ I M+
Sbjct: 268 CIVIYPMVIVIQSLMQG 284
>gi|282163998|ref|YP_003356383.1| putative type II secretion system protein [Methanocella paludicola
SANAE]
gi|282156312|dbj|BAI61400.1| putative bacterial type II secretion system protein [Methanocella
paludicola SANAE]
Length = 678
Score = 63.0 bits (152), Expect = 6e-08, Method: Composition-based stats.
Identities = 36/264 (13%), Positives = 90/264 (34%), Gaps = 12/264 (4%)
Query: 49 AVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFR 108
+ + ++ I +++ +S + + L+ ++K L ++ ++ + G
Sbjct: 333 SGRSKAEEQKLIGAIKAGKSSQKRKEFMQNPLKPIMEKPELSLLI---SVPVAILFTGLY 389
Query: 109 SEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWI 168
+L L + + + +L P +++ + P
Sbjct: 390 LALTLGSLSSA--MTNVTLMQNSATANISDPLVLYGPIIGYFDDILIFIMLILMIPLSVF 447
Query: 169 SNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAE 228
+R+ I PD L L E+G+++ Q++ ++ D G +S E+
Sbjct: 448 FENKIRRERKISAEMPDFLKKLASTNETGMTLTQSIALISNDNFGT---ISSEVKKINRN 504
Query: 229 LSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAE 288
+ + + A + F N + + ++ I D L V ++ + + E
Sbjct: 505 IQWGIDVNTALKMFGNSLNTALSQRVITLITKASESSGDIRDVLNVAANDAKMGERIRRE 564
Query: 289 KKAASLGPKLTVPMIIFFLPVLIL 312
+ L IIF + +
Sbjct: 565 RSDG----MLIYVAIIFITFCVFI 584
Score = 38.7 bits (89), Expect = 1.1, Method: Composition-based stats.
Identities = 32/195 (16%), Positives = 75/195 (38%), Gaps = 4/195 (2%)
Query: 131 GIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLL 190
+ WI + ++ + + AV YV + + + R+S I + P A+ +
Sbjct: 86 SLSWIAPFTDIIVIILGMSIMAV-FCYYVTYTVVMLIPAINASDRKSKINKQIPYAVTFM 144
Query: 191 LICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELS-FLPNRQVAFENFYNRTQMD 249
+ G+ I + R +S E+ + I ++ F + + A N N+T D
Sbjct: 145 YALSKGGMDIIG-ILRALNSAESTYGDISREIGIIIRDMDYFGSDLRTAIINCTNQTSSD 203
Query: 250 CVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPV 309
+++ L+ G + L + + L + + LG +
Sbjct: 204 LLQDLLTNLLSVIDSGGDVTQYLYGKTDQYQQRLLQDQKSFLEILGLIAESYVTALVAAP 263
Query: 310 LILVIIGPAILSIID 324
L ++I+ ++++I++
Sbjct: 264 LFIIIMQ-SVMTIMN 277
>gi|218679577|ref|ZP_03527474.1| type II secretion system protein [Rhizobium etli CIAT 894]
Length = 51
Score = 63.0 bits (152), Expect = 6e-08, Method: Composition-based stats.
Identities = 33/51 (64%), Positives = 39/51 (76%)
Query: 276 VSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
E R ER+ EAEKKAA+L PKLTVPMI+FFLPVLI VI+GPA + + D
Sbjct: 1 AQEGRDERMNEAEKKAAALPPKLTVPMILFFLPVLIAVILGPAGIQVSDKF 51
>gi|284989192|ref|YP_003407746.1| Type II secretion system F domain-containing protein
[Geodermatophilus obscurus DSM 43160]
gi|284062437|gb|ADB73375.1| Type II secretion system F domain protein [Geodermatophilus
obscurus DSM 43160]
Length = 237
Score = 63.0 bits (152), Expect = 6e-08, Method: Composition-based stats.
Identities = 29/143 (20%), Positives = 61/143 (42%), Gaps = 8/143 (5%)
Query: 180 KRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAF 239
+ P A DLL +C+E+G+ + +A + PL E+ + A+
Sbjct: 97 EADLPVACDLLAVCLEAGLPVGG---ALAAVAAALAGPLGPELTTVAGLYRLGAAPRRAW 153
Query: 240 ENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLT 299
+ + + L+++ G+++ +LR L + R+E+ A+ G +
Sbjct: 154 ADVPA-----ELAVLGRVLVRAGESGSTVVPALRSLAGDARAEQRSRADAAVRRAGVWVL 208
Query: 300 VPMIIFFLPVLILVIIGPAILSI 322
P+ + FLP + + + P +L I
Sbjct: 209 APLGVCFLPAFLCLGVVPLVLGI 231
>gi|302329928|gb|ADL20122.1| Putative type II secretion system protein [Corynebacterium
pseudotuberculosis 1002]
gi|308275612|gb|ADO25511.1| Putative type II secretion system protein [Corynebacterium
pseudotuberculosis I19]
Length = 217
Score = 63.0 bits (152), Expect = 6e-08, Method: Composition-based stats.
Identities = 28/138 (20%), Positives = 59/138 (42%), Gaps = 5/138 (3%)
Query: 187 LDLLLICVESGISIDQALRRVA--EDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYN 244
LDL CV+SG++ Q+ VA E+ + + L L + A+++
Sbjct: 77 LDLFAACVQSGLTPSQSAFAVAATEESSPRDARVRSGWLEVAMMLEMGMPAERAWQSLAE 136
Query: 245 RTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMII 304
+ + S+R G ++ ++ L + R+ + +A G + +P+ +
Sbjct: 137 ---HPALGDLVTVARASERSGATLAEACERLARQLRARASDLSLARAERAGVLIALPLTV 193
Query: 305 FFLPVLILVIIGPAILSI 322
FLP L+ + P ++S+
Sbjct: 194 CFLPAFFLLGLAPVVISL 211
>gi|198284410|ref|YP_002220731.1| type II secretion system protein [Acidithiobacillus ferrooxidans
ATCC 53993]
gi|218666085|ref|YP_002427078.1| tight adherence protein TadB, putative [Acidithiobacillus
ferrooxidans ATCC 23270]
gi|198248931|gb|ACH84524.1| type II secretion system protein [Acidithiobacillus ferrooxidans
ATCC 53993]
gi|218518298|gb|ACK78884.1| tight adherence protein TadB, putative [Acidithiobacillus
ferrooxidans ATCC 23270]
Length = 313
Score = 63.0 bits (152), Expect = 6e-08, Method: Composition-based stats.
Identities = 49/273 (17%), Positives = 93/273 (34%), Gaps = 23/273 (8%)
Query: 57 KQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNIL 116
++++ + + + L + + ++ L+ LR AG R + L
Sbjct: 35 RERLRAFDAHTGKAGDTESAQDDLLDHAARYKKESFLLQAE--EWLRRAGLRPKSYLPK- 91
Query: 117 LVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQ 176
I+ L++ ++ L F L + L G+ I + R+
Sbjct: 92 ------AAIVGLLITLLLALLVSDWLALAFILIFYPLALWGH---------IRYRIGLRR 136
Query: 177 SSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQ 236
S+ A P LD ++ G S+ AL +D G P+ E +
Sbjct: 137 SAAILALPGFLDAVVRASRVGASLPAALLSATKDAHG---PVREVFNQIMRRQQSGTPID 193
Query: 237 VAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGP 296
A R QM + L + RYG L + R + +AE A S
Sbjct: 194 QAMLTVGKRYQMQELAIIATVLRLNMRYGGRTDVVLERIADWLRGRVMAQAEFNALSAET 253
Query: 297 KLTVPMIIFFLP--VLILVIIGPAILSIIDTMK 327
+L ++ +P L +V++ + L + +
Sbjct: 254 RLGALILSLMIPGLALYIVLMNHSYLQGMWAVS 286
>gi|194366100|ref|YP_002028710.1| type II secretion system protein [Stenotrophomonas maltophilia
R551-3]
gi|194348904|gb|ACF52027.1| type II secretion system protein [Stenotrophomonas maltophilia
R551-3]
Length = 318
Score = 63.0 bits (152), Expect = 6e-08, Method: Composition-based stats.
Identities = 49/301 (16%), Positives = 108/301 (35%), Gaps = 29/301 (9%)
Query: 17 AITTAVSIFSLIYAVVIPSLGS-GELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTR 75
A+ +S+ S++ A+ + G+ E+R S+ + L + ++ AS
Sbjct: 5 ALLGVLSVISVLLALAVWLWGTASSREQRQASMQHAEQRLARGNASAGAPAGASVAAAND 64
Query: 76 DSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWI 135
+ + + L L + L+ AG ++ + L I+L LV ++ ++ ++ +
Sbjct: 65 PPRPASSGRRVLPLDGL---------LQRAGLQTGWKLPIML---LVPGLVLSVVAMLRL 112
Query: 136 FGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVE 195
+G + W+ K ++ + PD LD L+
Sbjct: 113 GTVWMFPLTLLLYLLGCWL------------WVMRRTSKLRAQLLHQLPDFLDNLVRLTA 160
Query: 196 SGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNAT 255
G S+ A + + S PL + T+ + A +MD ++ +
Sbjct: 161 LGNSLQAAFQVAS---MQTSAPLRGLLDTTVRYARSGMDLDRALALAAQPYRMDVLKVLS 217
Query: 256 QALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVII 315
+ S R G L+ + R + E A + +++ ++ LP V++
Sbjct: 218 VVIGVSVRIGGRSDQILQRMGDFMRDLEQAQQELAATTSETRMSA-WVLGLLPPACAVLM 276
Query: 316 G 316
Sbjct: 277 A 277
>gi|297564239|ref|YP_003683212.1| Type II secretion system F domain protein [Nocardiopsis
dassonvillei subsp. dassonvillei DSM 43111]
gi|296848688|gb|ADH70706.1| Type II secretion system F domain protein [Nocardiopsis
dassonvillei subsp. dassonvillei DSM 43111]
Length = 236
Score = 63.0 bits (152), Expect = 6e-08, Method: Composition-based stats.
Identities = 32/196 (16%), Positives = 67/196 (34%), Gaps = 6/196 (3%)
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
+LG + + VG +++ G S + ++ + P +
Sbjct: 42 LLGPTLAGAFALTVAVALFGAVGGLVVAGVCAALWVRARRSAGSRSQRLPVTADLPVVIG 101
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
LL + +G ++ L V+ G+ L EE+ +L A+
Sbjct: 102 LLASGIRAGATVPACLTAVSRATRGR---LGEELAAVAEQLRLGAAPAEAWRRPAL---P 155
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP 308
+ + + L ++ G + D L + R + LG + P+ + FLP
Sbjct: 156 EPLVPVGRDLARAADTGAPVADLLDRHAVDLRRTLRARGTARLERLGVLVVAPLGLCFLP 215
Query: 309 VLILVIIGPAILSIID 324
+L+ I P ++
Sbjct: 216 AFVLIGIVPMAAELLS 231
>gi|303233387|ref|ZP_07320056.1| type II secretion system F domain protein [Atopobium vaginae
PB189-T1-4]
gi|302480516|gb|EFL43607.1| type II secretion system F domain protein [Atopobium vaginae
PB189-T1-4]
Length = 317
Score = 63.0 bits (152), Expect = 7e-08, Method: Composition-based stats.
Identities = 35/241 (14%), Positives = 91/241 (37%), Gaps = 11/241 (4%)
Query: 77 SKSLRNFVKKLNLKAIL--VDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIW 134
L +F+++ + + I+ +D ++ AA + E + ++ R + +
Sbjct: 38 KLRLFDFLQRASQQPIVKRLDSISCVRVIAAYTQEELAQRRYMLTRFQTIVCLCAATLGA 97
Query: 135 IFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICV 194
I + + + + A+ ++ ++ A + +V ++ + PD +L + +
Sbjct: 98 IVAVAFIAQSLVSVGICAMSMLAFLPMIA-----NYIVHAKRDKVAHEMPDVFRILGMGL 152
Query: 195 ESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNA 254
SG ++ QA+ V G++ +L + V+
Sbjct: 153 SSGQTLTQAIAYVGIHKKGEA---GHAFQQASLQLRCGAGITDVLKGIAAMLHAPGVKFL 209
Query: 255 TQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVI 314
AL S R G+ + + R + + + + +L+V ++ LPV+++ I
Sbjct: 210 VTALAISQRTGSPLRNLFRQSAKLVEQQEQFKRLLRVKTAQVRLSVRVVAS-LPVVLICI 268
Query: 315 I 315
+
Sbjct: 269 L 269
>gi|253576285|ref|ZP_04853616.1| type II secretion system protein [Paenibacillus sp. oral taxon 786
str. D14]
gi|251844412|gb|EES72429.1| type II secretion system protein [Paenibacillus sp. oral taxon 786
str. D14]
Length = 270
Score = 63.0 bits (152), Expect = 7e-08, Method: Composition-based stats.
Identities = 24/156 (15%), Positives = 54/156 (34%), Gaps = 10/156 (6%)
Query: 162 CAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVP---- 217
P W L+++R+ ++ + AL L + +G S++ R +D+
Sbjct: 72 YTPKYWSGYLLRRRRENLSLHFKQALYSLSSSLAAGRSVENGFREAIDDLRLLYPDGDND 131
Query: 218 LSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVS 277
+ E+ + A + + + A +F R M+ + N R G + + +R +
Sbjct: 132 VMRELAIICARMDYGQPIEEALLDFSRRAAMEDIDNFADVFTTCKRSGGDLVEVIRRTSN 191
Query: 278 ETRSERLMEAEKKAA------SLGPKLTVPMIIFFL 307
+ + E L P++
Sbjct: 192 LIGEKLEITQEISVMIAQKRFEAKAMLAAPVLFLLF 227
>gi|310830507|ref|YP_003965608.1| hypothetical protein PPSC2_p0147 [Paenibacillus polymyxa SC2]
gi|309249974|gb|ADO59540.1| Putative uncharacterized protein [Paenibacillus polymyxa SC2]
Length = 313
Score = 63.0 bits (152), Expect = 7e-08, Method: Composition-based stats.
Identities = 37/276 (13%), Positives = 93/276 (33%), Gaps = 42/276 (15%)
Query: 27 LIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKK 86
L++A+ + L E+ RK+Q +L +++ + + ++ + K+
Sbjct: 6 LMFAITLFFFIGSSLFTMRGKNNFEK---RKEQSKNLLRENVLKQRIEQIAEGRVRYSKR 62
Query: 87 LNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPF 146
++ + AGF Y+ +++ V + + + +
Sbjct: 63 YAIETL---------CMQAGFPLTYAEYLMISVASALIVAIFVGMV-------------- 99
Query: 147 QLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRR 206
I+ VG+ P +I+ +R +++ + +++ E+ +AL
Sbjct: 100 MNNPILGIIFLIVGYMIPKQFITLRKNRRVVMMEKQIGSFMHMVIKRYETTREFSKALEL 159
Query: 207 VAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGT 266
+ G+ L E+ T+ +++ + + RT + + + GT
Sbjct: 160 STIEFKGEEP-LYTELRKTVLDINLGKPVTDSMDALARRTGNKYLARFSDYYKIASSIGT 218
Query: 267 SIGDSLRVLVSETRSERLMEA-----EKKAASLGPK 297
E R + L +A E + K
Sbjct: 219 ----------DEIRKKLLEQAYKQFEENRVNKQTTK 244
>gi|295395217|ref|ZP_06805425.1| type II secretion system protein [Brevibacterium mcbrellneri ATCC
49030]
gi|294971979|gb|EFG47846.1| type II secretion system protein [Brevibacterium mcbrellneri ATCC
49030]
Length = 290
Score = 62.6 bits (151), Expect = 7e-08, Method: Composition-based stats.
Identities = 37/192 (19%), Positives = 67/192 (34%), Gaps = 17/192 (8%)
Query: 98 IVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIG 157
++LRAAG + V + ++ + ++F + + G
Sbjct: 42 TRDELRAAGLHRVSPAQLFTVC---LVCGLMVASVTYVFSP----------ALPIAVCFG 88
Query: 158 YVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVP 217
AP + +K S + WP+A+D L V +G+S+ +A+ ++ P
Sbjct: 89 LFATVAPYQIVKIRARKTSVSRRTLWPEAIDHLSSGVRAGLSLPEAVCGLSARGPVALRP 148
Query: 218 LSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQAL-IQSDRYGTSIGDSLRVLV 276
L + E + +A F AL I + GT +G L+ L
Sbjct: 149 L---FEVFAREYRATGSFSLALNRFKESAADPVADRMVAALHITREVGGTDLGAMLKTLS 205
Query: 277 SETRSERLMEAE 288
R + AE
Sbjct: 206 QFLREDARTRAE 217
>gi|77456873|ref|YP_346378.1| type II secretion system protein [Pseudomonas fluorescens Pf0-1]
gi|77380876|gb|ABA72389.1| putative Flp pilus assembly protein TadB [Pseudomonas fluorescens
Pf0-1]
Length = 293
Score = 62.6 bits (151), Expect = 7e-08, Method: Composition-based stats.
Identities = 38/212 (17%), Positives = 71/212 (33%), Gaps = 21/212 (9%)
Query: 98 IVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIG 157
+ AG L + L++ +I L++G F +L
Sbjct: 55 LERAFLRAGLGHPDRLELWLLLWAFGSVIGLVIGGWIGFLLLLMLPPLAL---------- 104
Query: 158 YVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVP 217
V++ Q+R + P LD + ++SG ++ A V I P
Sbjct: 105 -------RVYVIWRYQRRLRRMIEQLPQLLDHTVRSLKSGRTLADA---VLGAIDASEDP 154
Query: 218 LSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVS 277
L M + + A + + D +R L + RYG + + L L+
Sbjct: 155 LKHAMGRVQRNVQLGVSLPEAVGDVAELYEKDELRLFAVGLKVNHRYGGNASELLENLIR 214
Query: 278 ETRSERLMEAEKKAASLGPKLTVPMIIFFLPV 309
R + +A + ++T ++ LPV
Sbjct: 215 MIRERDQASRQLRAMTGETRITA-WVLGLLPV 245
>gi|158314420|ref|YP_001506928.1| type II secretion system protein [Frankia sp. EAN1pec]
gi|158109825|gb|ABW12022.1| type II secretion system protein [Frankia sp. EAN1pec]
Length = 301
Score = 62.6 bits (151), Expect = 7e-08, Method: Composition-based stats.
Identities = 42/236 (17%), Positives = 88/236 (37%), Gaps = 14/236 (5%)
Query: 102 LRAAGFRSE----------YSLNILLVVRLVVPIIFLIL-GIIWIFGYDKLLEYPFQLRV 150
LRAAG ++ S L + + L+ ++ + +P+ + V
Sbjct: 69 LRAAGLPTDALRQDLATLGRSPEAHLAEKATAAVAGLLFPSVVGLAFAAGGRPFPWAVPV 128
Query: 151 GAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAED 210
+L+ VGF P + + +++ + + A L L+ + + G ++ AL A
Sbjct: 129 AVALLLTVVGFLLPDLTVKAEADRQRRAFRHALSAYLSLIQVLLAGGAGVETALTDAANV 188
Query: 211 IGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGD 270
G L T E + V Q+ + A+ + G +
Sbjct: 189 GNGWPFVAIRRALRTARETRI--SPWVGLGQLGVELQIAELTELADAVALAGTEGARVRQ 246
Query: 271 SLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
SL + R + +AE +A + ++++P ++ IL + PA+ I ++
Sbjct: 247 SLDAKAAALRVRQAQDAEAEANAATERMSIPGVL-IAIGFILFVFYPALTQITRSL 301
>gi|291521739|emb|CBK80032.1| Flp pilus assembly protein TadB [Coprococcus catus GD/7]
Length = 240
Score = 62.6 bits (151), Expect = 7e-08, Method: Composition-based stats.
Identities = 26/163 (15%), Positives = 58/163 (35%), Gaps = 8/163 (4%)
Query: 154 ILIGYVGFCAPSVWI----SNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAE 209
++ +G +I + R+ + + DA +L +G ++++ALR
Sbjct: 30 VVTSLLGIMIVPFYIKYKRRMREKSRKQMLWHEFKDAAAMLYSSTAAGGTLEKALRDTCC 89
Query: 210 DIGGQS---VPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGT 266
D+ L E L + + E+F R++ + + + L + + G
Sbjct: 90 DMKTSDSSYQVLLPEFERICMHLDQNRSLESVLEDFAVRSEDEDIAYFVRVLTVARKSGG 149
Query: 267 SIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPV 309
S+ +R + R+ + L K I+ +P
Sbjct: 150 SLSSIIRHTADTM-NLRMEINSEIETILAGKRGEWRIMLIVPP 191
>gi|228912576|ref|ZP_04076238.1| hypothetical protein bthur0013_66350 [Bacillus thuringiensis IBL
200]
gi|228847045|gb|EEM92037.1| hypothetical protein bthur0013_66350 [Bacillus thuringiensis IBL
200]
Length = 288
Score = 62.6 bits (151), Expect = 7e-08, Method: Composition-based stats.
Identities = 60/317 (18%), Positives = 122/317 (38%), Gaps = 37/317 (11%)
Query: 16 VAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTR 75
++ AV +F ++Y + L S + + + ++A +
Sbjct: 1 MSTILAVVVFVVMYWIFSTFLQSKKDSG---------------SLLTNYVENAKRIEKKN 45
Query: 76 DSKSLRNFVKKLNLKAILVD--ENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGII 133
++ + + L+ K + + E I KL AG +E L +++ PIIF + +I
Sbjct: 46 LNQMMLAPFQSLSHKYLTEEKKEQIQKKLEEAGLDTE--PEEYLKMKVAYPIIFTSVFLI 103
Query: 134 WIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLIC 193
+D L L+ + + P + ++ + K P+ L +L
Sbjct: 104 CTVFHDYYL-------FKVGALMSPLLYFYPDYLLKKRSKQAIEARKFELPEYLIPMLQL 156
Query: 194 VESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRN 253
+++ +++ + AE G+ L + AEL F NF V
Sbjct: 157 LKTHTTLEA--VKKAEIYAGRH--LRPYVSTLTAELEMYAGSDQPFRNFAAALNSPEVNT 212
Query: 254 ATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMII--FFLPVLI 311
T AL Q+ + T SLR++ ++ + R ++ E + K PM + F + V+
Sbjct: 213 FTIALQQAQK--TDKVQSLRIMDAQIKMMRELKHENYNRLIQNK---PMEMNKFNVAVIG 267
Query: 312 LVIIGPAILSIIDTMKD 328
++I P ++ I M+
Sbjct: 268 CIVIYPMVIVIQSLMQG 284
>gi|21392773|ref|NP_652852.1| hypothetical protein BXA0087 [Bacillus anthracis str. A2012]
gi|20520160|gb|AAM26042.1| conserved hypothetical protein [Bacillus anthracis str. A2012]
Length = 229
Score = 62.6 bits (151), Expect = 7e-08, Method: Composition-based stats.
Identities = 36/205 (17%), Positives = 77/205 (37%), Gaps = 21/205 (10%)
Query: 66 DSASSRLRTRDSKSLRNFVKKLNLKAILVD--ENIVNKLRAAGFRSEYSLNILLVVRLVV 123
++A + ++ + + L+ K + + E I KL AG + L +++
Sbjct: 29 ENAKRIEKKNLNQMMLAPFQSLSHKYLTEEKKEQIQKKLEEAGL--DTKPEEYLKMKVAY 86
Query: 124 PIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAW 183
P+IF + +I +D L +LI + + P + +++ + K
Sbjct: 87 PVIFTSVFLICTVFHDYYL-------FKVGVLISPLLYFYPDYLLKKRIKQAIEARKFEL 139
Query: 184 PDALDLLLICVESGISIDQ---ALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFE 240
P+ L +L +++ +++ A + L+ E+ E+ + F
Sbjct: 140 PEYLIPMLQLLKTHTTLEAVKKAQIYAGRHLRPYVSTLTAEL-----EMYAGSD--QPFR 192
Query: 241 NFYNRTQMDCVRNATQALIQSDRYG 265
NF V T AL Q+ + G
Sbjct: 193 NFAAALNSPEVNTFTIALQQAQKNG 217
>gi|330959998|gb|EGH60258.1| hypothetical protein PMA4326_15684 [Pseudomonas syringae pv.
maculicola str. ES4326]
Length = 294
Score = 62.6 bits (151), Expect = 8e-08, Method: Composition-based stats.
Identities = 30/184 (16%), Positives = 66/184 (35%), Gaps = 8/184 (4%)
Query: 126 IFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPD 185
+ L L + + V A++ + + +++S + R + P
Sbjct: 71 VGLALTLYALVVLIGYGLGGGIGAVCALLGVPLML----RLFVSWRYRVRVRRMIEQLPQ 126
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
LD + ++SG ++ A+ I PL + M + + A +F
Sbjct: 127 LLDHSVRSLKSGRTLSDAVLY---GIAAADQPLKDGMSRIERNVQLGVSLPDAARDFAEL 183
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
+ D L + RYG + + + L+ R + +A + ++T +++
Sbjct: 184 YESDEFHLFALGLRVNHRYGGNASELMENLIRLIREREQAGRQLRAMTGETRMTA-LVLG 242
Query: 306 FLPV 309
LPV
Sbjct: 243 LLPV 246
>gi|148974881|ref|ZP_01811861.1| Flp pilus assembly protein TadB [Vibrionales bacterium SWAT-3]
gi|145965390|gb|EDK30639.1| Flp pilus assembly protein TadB [Vibrionales bacterium SWAT-3]
Length = 304
Score = 62.6 bits (151), Expect = 8e-08, Method: Composition-based stats.
Identities = 33/199 (16%), Positives = 70/199 (35%), Gaps = 13/199 (6%)
Query: 117 LVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQ 176
+ ++L++ + + I + +YP L + IL N +++RQ
Sbjct: 75 MSLKLILFVCVSASAVYAINEFFLRQDYPVCLMIAEPILF---------FVFYNKLKQRQ 125
Query: 177 -SSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNR 235
K +PDAL++L + SG SI A V + + + +E L
Sbjct: 126 MDRFKTNFPDALNILSGAISSGQSIIHAFEYVGKQLDN---EVGKEFKFMAERLLIGEAP 182
Query: 236 QVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLG 295
E N + + G + D + + R +E +K A +
Sbjct: 183 DDVLERSSNTFPYLEYFFFASTIRINLARGGQLKDVINKINRLMFDSRAVEKKKNALTSE 242
Query: 296 PKLTVPMIIFFLPVLILVI 314
+ + +I + ++++
Sbjct: 243 ARASAKIIACLPVIFLIIL 261
>gi|167894382|ref|ZP_02481784.1| type II secretion system protein [Burkholderia pseudomallei 7894]
Length = 205
Score = 62.6 bits (151), Expect = 8e-08, Method: Composition-based stats.
Identities = 27/149 (18%), Positives = 54/149 (36%), Gaps = 7/149 (4%)
Query: 169 SNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAE 228
L+ + + +PDALDL++ V +GI + QA+ + P+
Sbjct: 18 RILIGRFKQRFLSVFPDALDLIIRAVRAGIPVAQAIGTAGRESEE---PVRATFRAMGDA 74
Query: 229 LSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAE 288
L + + E R Q+ L+ G ++ ++L L R+ R + +
Sbjct: 75 LRVGADLKDVLEQQAERLQLADFSFFGVCLVLQRETGGNLTETLENLSGIIRTRRDIRMK 134
Query: 289 KKA----ASLGPKLTVPMIIFFLPVLILV 313
+A + K+ + L +V
Sbjct: 135 TRALTAEGRIASKIIAAVPFAIAGFLFVV 163
>gi|167845810|ref|ZP_02471318.1| type II secretion system protein [Burkholderia pseudomallei B7210]
Length = 202
Score = 62.6 bits (151), Expect = 8e-08, Method: Composition-based stats.
Identities = 27/149 (18%), Positives = 54/149 (36%), Gaps = 7/149 (4%)
Query: 169 SNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAE 228
L+ + + +PDALDL++ V +GI + QA+ + P+
Sbjct: 15 RILIGRFKQRFLSVFPDALDLIIRAVRAGIPVAQAIGTAGRESEE---PVRATFRAMGDA 71
Query: 229 LSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAE 288
L + + E R Q+ L+ G ++ ++L L R+ R + +
Sbjct: 72 LRVGADLKDVLEQQAERLQLADFSFFGVCLVLQRETGGNLTETLENLSGIIRTRRDIRMK 131
Query: 289 KKA----ASLGPKLTVPMIIFFLPVLILV 313
+A + K+ + L +V
Sbjct: 132 TRALTAEGRIASKIIAAVPFAIAGFLFVV 160
>gi|167824264|ref|ZP_02455735.1| type II secretion system protein [Burkholderia pseudomallei 9]
Length = 204
Score = 62.6 bits (151), Expect = 8e-08, Method: Composition-based stats.
Identities = 27/149 (18%), Positives = 54/149 (36%), Gaps = 7/149 (4%)
Query: 169 SNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAE 228
L+ + + +PDALDL++ V +GI + QA+ + P+
Sbjct: 17 RILIGRFKQRFLSVFPDALDLIIRAVRAGIPVAQAIGTAGRESEE---PVRATFRAMGDA 73
Query: 229 LSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAE 288
L + + E R Q+ L+ G ++ ++L L R+ R + +
Sbjct: 74 LRVGADLKDVLEQQAERLQLADFSFFGVCLVLQRETGGNLTETLENLSGIIRTRRDIRMK 133
Query: 289 KKA----ASLGPKLTVPMIIFFLPVLILV 313
+A + K+ + L +V
Sbjct: 134 TRALTAEGRIASKIIAAVPFAIAGFLFVV 162
>gi|167738670|ref|ZP_02411444.1| type II secretion system protein [Burkholderia pseudomallei 14]
Length = 200
Score = 62.6 bits (151), Expect = 8e-08, Method: Composition-based stats.
Identities = 27/149 (18%), Positives = 54/149 (36%), Gaps = 7/149 (4%)
Query: 169 SNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAE 228
L+ + + +PDALDL++ V +GI + QA+ + P+
Sbjct: 13 RILIGRFKQRFLSVFPDALDLIIRAVRAGIPVAQAIGTAGRESEE---PVRATFRAMGDA 69
Query: 229 LSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAE 288
L + + E R Q+ L+ G ++ ++L L R+ R + +
Sbjct: 70 LRVGADLKDVLEQQAERLQLADFSFFGVCLVLQRETGGNLTETLENLSGIIRTRRDIRMK 129
Query: 289 KKA----ASLGPKLTVPMIIFFLPVLILV 313
+A + K+ + L +V
Sbjct: 130 TRALTAEGRIASKIIAAVPFAIAGFLFVV 158
>gi|229164942|ref|ZP_04292757.1| hypothetical protein bcere0009_56150 [Bacillus cereus R309803]
gi|228618526|gb|EEK75537.1| hypothetical protein bcere0009_56150 [Bacillus cereus R309803]
Length = 276
Score = 62.6 bits (151), Expect = 8e-08, Method: Composition-based stats.
Identities = 44/261 (16%), Positives = 97/261 (37%), Gaps = 29/261 (11%)
Query: 66 DSASSRLRTRDSKSLRNFVKKLNLKAILVDEN--IVNKLRAAGFRSEYSLNILLVVRLVV 123
++A + ++ + + L+ K + ++ I KL AG + L +++
Sbjct: 24 ENAKRIEKKNLNQMMLAPFQSLSHKYLTEEKKELIQKKLEEAGL--DTKPEEYLKMKVAY 81
Query: 124 PIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAW 183
PIIF + +I +D L +LI + + P + +++ + K
Sbjct: 82 PIIFTSVFLICTVFHDYYL-------FKVGVLISPLLYFYPDYLLKIRIKQAIEARKFEL 134
Query: 184 PDALDLLLICVESGISIDQ---ALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFE 240
P+ L +L +++ +++ A + L+ E+ E+ + F
Sbjct: 135 PEYLIPMLQLLKTHTTLEAVKKAQIYAGRHLRPYVSTLTAEL-----EMYAGSD--QPFR 187
Query: 241 NFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRV---LVSETRSERLMEAEKKAASLGPK 297
NF V T AL Q+ + T SLR+ + R + + + +
Sbjct: 188 NFAAALNSPEVNTFTIALQQAQK--TDKVQSLRIMDAQIKMMRELKHENYNRLIQNKPME 245
Query: 298 L---TVPMIIFFLPVLILVII 315
+ V +I L ++++I
Sbjct: 246 MNKFNVALIGCMLTSPMVILI 266
>gi|319937914|ref|ZP_08012314.1| hypothetical protein HMPREF9488_03150 [Coprobacillus sp. 29_1]
gi|319806820|gb|EFW03459.1| hypothetical protein HMPREF9488_03150 [Coprobacillus sp. 29_1]
Length = 291
Score = 62.6 bits (151), Expect = 8e-08, Method: Composition-based stats.
Identities = 38/237 (16%), Positives = 92/237 (38%), Gaps = 12/237 (5%)
Query: 85 KKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEY 144
K LN + ++K F + + ++ ++ + + LI+ ++ ++ +
Sbjct: 59 KFLNTNSYQNYYKWLDKQMNLSFDEKNTPEGIIRMQEIAVLSGLIVFLMMVWIVPPFITI 118
Query: 145 PFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQAL 204
L A++ P + N++ + S ++ P ++ +++ ++ G+S++ A
Sbjct: 119 IILLIFAAIV-------FYPIFYYQNIISTKNSQFDKSLPMFINQVILSIKCGVSLENAF 171
Query: 205 RRVAEDIGGQSVPLSE-EMLLTIAELSFLP-NRQVAFENFYNRTQMDCVRNATQALIQSD 262
+ G L + E +AEL + F N R + ++
Sbjct: 172 GFA---LRGMDKTLVQREYAKMVAELKIYSDDIPKVFMNLNRRVHTEECERFCNIIVSGL 228
Query: 263 RYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAI 319
+ G + D L+ +++ +KKA S T I+ +IL++I P +
Sbjct: 229 KNGNKMSDILKSEYERISDNQIVALKKKADSKKNLGTAINILLIFVPVILLLIIPML 285
>gi|88602462|ref|YP_502640.1| type II secretion system protein [Methanospirillum hungatei JF-1]
gi|88187924|gb|ABD40921.1| type II secretion system protein [Methanospirillum hungatei JF-1]
Length = 641
Score = 62.6 bits (151), Expect = 8e-08, Method: Composition-based stats.
Identities = 31/213 (14%), Positives = 73/213 (34%), Gaps = 8/213 (3%)
Query: 117 LVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQ 176
L +PI + I++ LE +++ + P ++
Sbjct: 366 LSFYFSIPIALAYVIYIFLTIPVGTLEDNINYIDDQLMIALLIT-LIPFAIFYTRWNQKI 424
Query: 177 SSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQ 236
S++ PD LD + E GI++ Q++ +A L E+ ++ + N
Sbjct: 425 RSLESMIPDFLDRMAGINEVGITLTQSIAVIA---RANMGVLGYEISRIHRDIEWGANFS 481
Query: 237 VAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGP 296
A F +R + + + ++ +SI LR+ ++ R + +
Sbjct: 482 DALIRFEHRVRTALIARTVTLITRAATMSSSISSLLRIAANDARMSENLRRD----RFSE 537
Query: 297 KLTVPMIIFFLPVLILVIIGPAILSIIDTMKDH 329
I++ + + +IG + + +
Sbjct: 538 MFIYTAIVYLSFFVFIFVIGVITTQFLTVLAEQ 570
Score = 48.3 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 35/189 (18%), Positives = 78/189 (41%), Gaps = 3/189 (1%)
Query: 138 YDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESG 197
++ L V ++ ++G+ A +V S + R++ I P+A+ + + G
Sbjct: 89 LPIIIIVQILLGVILFLIGSFIGYWAYTVLPSLTKKSRETKITIGLPNAVSYMYAMRKGG 148
Query: 198 ISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSF-LPNRQVAFENFYNRTQMDCVRNATQ 256
I LR ++ ++ +S E + + F + A ++ T +R+ Q
Sbjct: 149 AEIITILRSLS-EMSAIYGEVSLEFRQAVRDADFFGYDIINALKHVSETTPSRKLRDFLQ 207
Query: 257 ALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIG 316
LI + G ++ L+ V + E E ++ LG + + IF L L++I
Sbjct: 208 DLISTVESGGNLAQFLQDRVFILQEEAKFEQKQFLQFLGLVAEIYVTIFIAGPLFLIVIL 267
Query: 317 PAILSIIDT 325
++ ++ +
Sbjct: 268 -VVMGMMGS 275
>gi|330953056|gb|EGH53316.1| type II secretion system protein [Pseudomonas syringae Cit 7]
Length = 294
Score = 62.6 bits (151), Expect = 8e-08, Method: Composition-based stats.
Identities = 32/180 (17%), Positives = 70/180 (38%), Gaps = 5/180 (2%)
Query: 132 IIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLL 191
+ ++ L+ Y VGA+ ++ V +++S + R + + P LD +
Sbjct: 74 ALTLYALLILIGYAMAGGVGAISVMLAVPLTL-RLFVSWRYEVRVRRMIQQLPQLLDHTV 132
Query: 192 ICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCV 251
++SG ++ A V I PL + M + + A +F + D
Sbjct: 133 RSLKSGRTLADA---VLHGIDATDQPLKDGMSRIERNVQLGVSLPDAARDFAELYERDEF 189
Query: 252 RNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLI 311
L + RYG + + + L+ R + +A + ++T +++ LP+ +
Sbjct: 190 HLFAIGLRVNHRYGGNASELMENLIKLIRDREQAGRQLRAMTGETRMTA-LVLALLPITM 248
>gi|196048208|ref|ZP_03115385.1| conserved hypothetical protein [Bacillus cereus 03BB108]
gi|196020945|gb|EDX59675.1| conserved hypothetical protein [Bacillus cereus 03BB108]
Length = 288
Score = 62.6 bits (151), Expect = 8e-08, Method: Composition-based stats.
Identities = 52/267 (19%), Positives = 108/267 (40%), Gaps = 22/267 (8%)
Query: 66 DSASSRLRTRDSKSLRNFVKKLNLKAILVDEN--IVNKLRAAGFRSEYSLNILLVVRLVV 123
++A + ++ + + L+ K + ++ I KL AG + L +++
Sbjct: 36 ENAKRIEKKNLNQMMLAPFQSLSHKYLTEEKKELIQKKLEEAGL--DTKPEEYLKMKVAY 93
Query: 124 PIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAW 183
PIIF + +I +D L +LI + + P + +++ + K
Sbjct: 94 PIIFTSVFLICTVFHDYYL-------FKVGVLISPLLYFYPDYLLKRKIKQAIEARKFEL 146
Query: 184 PDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFY 243
P+ L +L +++ +++ + A+ G+ L + AEL F NF
Sbjct: 147 PEYLIPMLQLLKTHTTLEA--VKKAQIYAGRH--LRPYVSTLTAELEMYAGSDQPFRNFA 202
Query: 244 NRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMI 303
V T AL Q+ + T SLR++ ++ + R ++ E + K PM
Sbjct: 203 AALNSPEVNTFTIALQQAQK--TDKVQSLRIMDAQIKMMRELKHENYNRLIQNK---PME 257
Query: 304 I--FFLPVLILVIIGPAILSIIDTMKD 328
+ F + V+ ++I P ++ I M+
Sbjct: 258 MNKFNVAVIGCIVIYPMVIVIQSLMQG 284
>gi|302544240|ref|ZP_07296582.1| putative integral membrane protein [Streptomyces hygroscopicus ATCC
53653]
gi|302461858|gb|EFL24951.1| putative integral membrane protein [Streptomyces himastatinicus
ATCC 53653]
Length = 195
Score = 62.6 bits (151), Expect = 8e-08, Method: Composition-based stats.
Identities = 26/127 (20%), Positives = 52/127 (40%), Gaps = 6/127 (4%)
Query: 203 ALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSD 262
A V + +GG P+ + ++ T AEL A+ + +AL +
Sbjct: 74 AADAVGKSLGG---PVGDRLVRTAAELRLGGEPVGAWGRLGA---LPGASGLARALEHAG 127
Query: 263 RYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
G + + + ++ R+E+ EA ++A T P+ FLP +L+ + P + +
Sbjct: 128 TTGAPAVEPVSRIAADCRAEQGREAGRRADRASVLATAPLGACFLPAYLLIGVAPVMTGL 187
Query: 323 IDTMKDH 329
+ H
Sbjct: 188 AGGLAGH 194
>gi|331014705|gb|EGH94761.1| hypothetical protein PLA106_02335 [Pseudomonas syringae pv.
lachrymans str. M302278PT]
Length = 295
Score = 62.6 bits (151), Expect = 9e-08, Method: Composition-based stats.
Identities = 32/185 (17%), Positives = 67/185 (36%), Gaps = 8/185 (4%)
Query: 127 FLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDA 186
L L + + V ++ + V V++S ++R + + P
Sbjct: 73 GLALTLYALLIVLGYWLGGGLGAVSMLLAVPLVV----RVFVSWRYERRVRRMIQQLPQL 128
Query: 187 LDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRT 246
LD + ++SG ++ A V I PL + M + + A +F
Sbjct: 129 LDHTVRSLKSGRTLADA---VLHGIEATDQPLKDGMSRIELNVQLGVSLPDAVRDFAELY 185
Query: 247 QMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFF 306
+ D L + RYG + + + L+ R + +A + ++T +++
Sbjct: 186 ERDEFHLFALGLRVNHRYGGNASELMENLIKLIRDREQAGRQLRAMTGETRMTA-IVLGL 244
Query: 307 LPVLI 311
LPV +
Sbjct: 245 LPVSM 249
>gi|255514158|gb|EET90420.1| type II secretion system protein [Candidatus Micrarchaeum
acidiphilum ARMAN-2]
Length = 365
Score = 62.6 bits (151), Expect = 9e-08, Method: Composition-based stats.
Identities = 47/283 (16%), Positives = 110/283 (38%), Gaps = 28/283 (9%)
Query: 54 ILRKQQITSLQKDSASSRLRTRDSK--SLRNFVKKLNLKAILVDENIVNKLRAAGFRSEY 111
++ T++ S + ++ K N+V+KL LK ++E + + +
Sbjct: 63 QPQQPNATTIPNASPQGKRPSQRKKPGKFENYVEKLALKQKGLEEALRAQ------DIKE 116
Query: 112 SLNILLV-VRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISN 170
+ + + + ++ +++G+ I + L P V++ G +GF + ++N
Sbjct: 117 TPKQFVKRMVMTSMLLAVVIGLTLIILFIHLNLSP----ALGVVMGGGIGFVMYMMLLNN 172
Query: 171 -------LVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEML 223
K ++R A ++I + SG+ + A+ ++ S+E
Sbjct: 173 FLRFPIQKSNKGAKKVERDILFAARDMIISLRSGMPLFNAIVSIS----TGYADASKEFA 228
Query: 224 LTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSER 283
+ + + A + T+ D R S + G I +L+ ++ + ER
Sbjct: 229 KIVERVQLGMPLEEAIDQTIADTKSDSFRRIMLQASVSIKAGADIVSALQTVIDQLSQER 288
Query: 284 LMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
+E + L + + L +IL +G A+++I+ T
Sbjct: 289 YIELRRYGQRLNA----IAMFYMLFGVILPSMGIAVVTILTTF 327
>gi|238782878|ref|ZP_04626907.1| Type II secretion system protein F domain protein [Yersinia
bercovieri ATCC 43970]
gi|238716301|gb|EEQ08284.1| Type II secretion system protein F domain protein [Yersinia
bercovieri ATCC 43970]
Length = 181
Score = 62.2 bits (150), Expect = 9e-08, Method: Composition-based stats.
Identities = 30/149 (20%), Positives = 67/149 (44%), Gaps = 4/149 (2%)
Query: 181 RAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFE 240
+ +P+ + ++ + SG SI+Q L R +I G PL +E+ L +L+ + + F
Sbjct: 8 QDFPEVILMITMAASSGASINQILERCGYEING---PLGDELTLICRKLNLGESPETVFY 64
Query: 241 NFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV 300
+ Y R ++ + + G + + L S + E +K + +++V
Sbjct: 65 DAYQRFHYPEFYFLITIILLNLQQGGQLRELTNRLSSVIAKNKTSEQKKAVMTAQTRMSV 124
Query: 301 PMIIFFLPVLILVIIGPAILSIIDTMKDH 329
II +P+ +++ + I++M +H
Sbjct: 125 -NIISLMPLAFSLLLYFIDPTTIESMWNH 152
>gi|20092770|ref|NP_618845.1| hypothetical protein MA3976 [Methanosarcina acetivorans C2A]
gi|19918065|gb|AAM07325.1| conserved hypothetical protein [Methanosarcina acetivorans C2A]
Length = 667
Score = 62.2 bits (150), Expect = 9e-08, Method: Composition-based stats.
Identities = 50/312 (16%), Positives = 107/312 (34%), Gaps = 24/312 (7%)
Query: 5 FFDLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQ 64
D AT L + + A+ + I+ V + L + E + R + +
Sbjct: 301 MIDNGGATNLYILVYGAIPFGTAIFLVFLDMLTGDAEK------MPEEKTSRIKSDSFSD 354
Query: 65 KDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVP 124
R + F +K+N ++ I L + + + + VP
Sbjct: 355 VRVKPWTERDEELLQKMAFYEKVNRVKNVILHPIKTML-------DRPVYAFV---ISVP 404
Query: 125 IIFLILGIIWIFGYDKLLEY-PFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAW 183
I ++ + + I + + P + L ++ I+
Sbjct: 405 IALGYFASAFLKQMPYEGGFIETASTLDDYIFVTLLVLFIPYIIFHELEVRKIRQIEDQV 464
Query: 184 PDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFY 243
P+ L L +GI + A+ A+ G+ L E+ T+A++ + N + A + F
Sbjct: 465 PEFLKRLASINGTGILLADAIAITAQSNMGK---LRSEIKCTVADIRWNSNLEEALKRFE 521
Query: 244 NRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMI 303
R + + R + + ++ I + + + E+ ++ E+ A I
Sbjct: 522 ARIRTNMTRRSLTLIAKASESTGDIHKVISTVADDADIEKNLKKERSAE----MFIYVFI 577
Query: 304 IFFLPVLILVII 315
IF + LVI+
Sbjct: 578 IFVTFCVFLVIV 589
Score = 49.5 bits (117), Expect = 7e-04, Method: Composition-based stats.
Identities = 36/188 (19%), Positives = 73/188 (38%), Gaps = 8/188 (4%)
Query: 144 YPFQLRVGAVIL----IGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESG-I 198
+PF L + ++ I + + R+ +I P A L + G +
Sbjct: 119 FPFILTIVGGLIFFSMIAAFTYGLIMAYPPMKADSRKRAINATMPHATAFLYVLQRGGGM 178
Query: 199 SIDQALRRVAEDIGGQSVPLSEEMLLTIAELS-FLPNRQVAFENFYNRTQMDCVRNATQA 257
+I ++ +++ S E I ++ F + Q A N +RT + ++
Sbjct: 179 TIFDIMKSLSKHSHLYGTA-SHEFGNIIRDVEYFGKDLQDALWNAADRTPSEQFKDLVDG 237
Query: 258 LIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGP 317
LI G I L+ +S E ++ +LG V + +F + L L++I
Sbjct: 238 LISIVSGGGDITLYLKNKTDLYKSNANKEHKRFLDTLGLLAEVYITVFVVGPLFLMVIL- 296
Query: 318 AILSIIDT 325
++++ID
Sbjct: 297 VVMNMIDN 304
>gi|116052335|ref|YP_792646.1| hypothetical protein PA14_55880 [Pseudomonas aeruginosa UCBPP-PA14]
gi|254239029|ref|ZP_04932352.1| hypothetical protein PACG_05206 [Pseudomonas aeruginosa C3719]
gi|296391000|ref|ZP_06880475.1| hypothetical protein PaerPAb_22729 [Pseudomonas aeruginosa PAb1]
gi|313106820|ref|ZP_07793032.1| putative pilus assembly protein [Pseudomonas aeruginosa 39016]
gi|115587556|gb|ABJ13571.1| putative pilus assembly protein [Pseudomonas aeruginosa UCBPP-PA14]
gi|126170960|gb|EAZ56471.1| hypothetical protein PACG_05206 [Pseudomonas aeruginosa C3719]
gi|310879534|gb|EFQ38128.1| putative pilus assembly protein [Pseudomonas aeruginosa 39016]
Length = 294
Score = 62.2 bits (150), Expect = 1e-07, Method: Composition-based stats.
Identities = 31/203 (15%), Positives = 72/203 (35%), Gaps = 19/203 (9%)
Query: 98 IVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIG 157
+ ++R AG + + V + L+ + +FG L + + +G
Sbjct: 55 LARQMRRAGIQRPRP----WLFGAAVLALLLVWSGLRLFGIVGALGGLLLAALSCRVALG 110
Query: 158 YVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVP 217
+ Q+R + R P LD ++ + +G ++ AL + E+ P
Sbjct: 111 MLY------------QRRLKRMIRQMPRFLDQVVRSLHAGRTLGDALMQAVENAEE---P 155
Query: 218 LSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVS 277
L + L + + A + +++ +R + + RYG + D L +V
Sbjct: 156 LRDIFTLARNHVLLGIHLPEALQEVAELYEVEELRILALGVSVNHRYGGNTSDLLDSIVK 215
Query: 278 ETRSERLMEAEKKAASLGPKLTV 300
+ + A + +++
Sbjct: 216 LIHEREKLSRQLHAMTGETRISA 238
>gi|83719955|ref|YP_442976.1| pilus assembly protein [Burkholderia thailandensis E264]
gi|257139200|ref|ZP_05587462.1| pilus assembly protein, putative [Burkholderia thailandensis E264]
gi|83653780|gb|ABC37843.1| pilus assembly protein, putative [Burkholderia thailandensis E264]
Length = 330
Score = 62.2 bits (150), Expect = 1e-07, Method: Composition-based stats.
Identities = 27/149 (18%), Positives = 53/149 (35%), Gaps = 7/149 (4%)
Query: 169 SNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAE 228
L+ + + +PDALDL++ V +GI + QA+ + P+
Sbjct: 143 RMLIARFKQRFLSVFPDALDLIIRAVRAGIPVAQAIGTAGRESEE---PVRATFRAMGDA 199
Query: 229 LSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAE 288
L + + E R Q+ L G ++ ++L L R+ R + +
Sbjct: 200 LRVGADMKDVLEQQAARLQLADFSFFGVCLTLQRETGGNLTETLENLSGIIRARRDIRMK 259
Query: 289 KKA----ASLGPKLTVPMIIFFLPVLILV 313
+A + K+ + L +V
Sbjct: 260 TRALTAEGRIASKIIAAVPFAIAAFLFVV 288
>gi|167719678|ref|ZP_02402914.1| type II secretion system protein [Burkholderia pseudomallei DM98]
Length = 205
Score = 62.2 bits (150), Expect = 1e-07, Method: Composition-based stats.
Identities = 28/155 (18%), Positives = 55/155 (35%), Gaps = 7/155 (4%)
Query: 163 APSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEM 222
A L+ + + +PDALDL++ V +GI + QA+ + P+
Sbjct: 12 AARAVYRILIGRFKQRFLSVFPDALDLIIRAVRAGIPVAQAIGTAGRESEE---PVRATF 68
Query: 223 LLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSE 282
L + + E R Q+ L+ G ++ ++L L R+
Sbjct: 69 RAMGDALRVGADLKDVLEQQAERLQLADFSFFGVCLVLQRETGGNLTETLENLSGIIRTR 128
Query: 283 RLMEAEKKA----ASLGPKLTVPMIIFFLPVLILV 313
R + + +A + K+ + L +V
Sbjct: 129 RDIRMKTRALTAEGRIASKIIAAVPFAIAGFLFVV 163
>gi|330873644|gb|EGH07793.1| hypothetical protein PSYMP_04410 [Pseudomonas syringae pv.
morsprunorum str. M302280PT]
Length = 295
Score = 62.2 bits (150), Expect = 1e-07, Method: Composition-based stats.
Identities = 29/181 (16%), Positives = 64/181 (35%), Gaps = 4/181 (2%)
Query: 131 GIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLL 190
G+ ++ + + V++S ++R + + P LD
Sbjct: 73 GLALTLYALSIVLGYWLGGGLGAASMLLAVPLVVRVFVSWRYERRVRRMIQQLPQLLDHT 132
Query: 191 LICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDC 250
+ ++SG ++ A V I PL + M + + A +F + D
Sbjct: 133 VRSLKSGRTLADA---VLHGIEATDQPLKDGMSRIELNVQLGVSLPDAVRDFAELYERDE 189
Query: 251 VRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVL 310
L + RYG + + + L+ R + +A + ++T +++ LPV
Sbjct: 190 FHLFALGLRVNHRYGGNASELMENLIKLIRDREQAGRQLRAMTGETRMTA-IVLGLLPVS 248
Query: 311 I 311
+
Sbjct: 249 M 249
>gi|325663220|ref|ZP_08151670.1| hypothetical protein HMPREF0490_02411 [Lachnospiraceae bacterium
4_1_37FAA]
gi|325470674|gb|EGC73904.1| hypothetical protein HMPREF0490_02411 [Lachnospiraceae bacterium
4_1_37FAA]
Length = 251
Score = 62.2 bits (150), Expect = 1e-07, Method: Composition-based stats.
Identities = 31/211 (14%), Positives = 79/211 (37%), Gaps = 19/211 (9%)
Query: 120 RLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSI 179
+ + L+ GI ++F +G ++ ++ +W ++K+Q
Sbjct: 21 KAAFKGLALLSGIAYLFY---------DFFLGGLMFSPFLVIYL-RIWEKQYIKKQQQEF 70
Query: 180 KRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVP---LSEEMLLTIAELSFLPNRQ 236
+ +L + + G S + AL+ A+D+ + E I +L+ +
Sbjct: 71 CAQFKMSLQSMSSALNVGYSAENALKETAKDLSLIYKKDTRIMREYTYMIHQLNMNVPLE 130
Query: 237 VAFENFYNRTQMDCVRNATQALIQSDRYGTS----IGDSLRVLVSETRSERLMEAEKKAA 292
++ F +R + V N + + R G I ++++ + + +R +E A
Sbjct: 131 QIWKEFADRVGQEDVSNFVSVFVAAKRAGGDSIEMIRNAVKQICEKIEVKREIEMTMSAK 190
Query: 293 SLGPKLTVPMIIFFLPVLILVIIGPAILSII 323
L ++ + + + I P + ++
Sbjct: 191 KLEFQVMSVVPFGI--IFYMRIAFPDFVEVL 219
>gi|28871969|ref|NP_794588.1| hypothetical protein PSPTO_4854 [Pseudomonas syringae pv. tomato
str. DC3000]
gi|213968013|ref|ZP_03396159.1| conserved hypothetical protein [Pseudomonas syringae pv. tomato T1]
gi|301383671|ref|ZP_07232089.1| hypothetical protein PsyrptM_13603 [Pseudomonas syringae pv. tomato
Max13]
gi|302059960|ref|ZP_07251501.1| hypothetical protein PsyrptK_08210 [Pseudomonas syringae pv. tomato
K40]
gi|302131626|ref|ZP_07257616.1| hypothetical protein PsyrptN_09547 [Pseudomonas syringae pv. tomato
NCPPB 1108]
gi|28855222|gb|AAO58283.1| conserved protein of unknown function [Pseudomonas syringae pv.
tomato str. DC3000]
gi|213927356|gb|EEB60905.1| conserved hypothetical protein [Pseudomonas syringae pv. tomato T1]
Length = 295
Score = 62.2 bits (150), Expect = 1e-07, Method: Composition-based stats.
Identities = 32/185 (17%), Positives = 67/185 (36%), Gaps = 8/185 (4%)
Query: 127 FLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDA 186
L L + + V ++ + V V++S ++R + + P
Sbjct: 73 GLALTLYALLIVLGYWLGGGLGAVSMLLAVPLVV----RVFVSWRYERRVRRMIQQLPQL 128
Query: 187 LDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRT 246
LD + ++SG ++ A V I PL + M + + A +F
Sbjct: 129 LDHTVRSLKSGRTLADA---VLHGIEATDQPLKDGMSRIELNVQLGVSLPDAVRDFAELY 185
Query: 247 QMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFF 306
+ D L + RYG + + + L+ R + +A + ++T +++
Sbjct: 186 ERDEFHLFALGLRVNHRYGGNASELMENLIKLIRDREQAGRQLRAMTGETRMTA-IVLGL 244
Query: 307 LPVLI 311
LPV +
Sbjct: 245 LPVSM 249
>gi|258652939|ref|YP_003202095.1| hypothetical protein Namu_2760 [Nakamurella multipartita DSM 44233]
gi|258556164|gb|ACV79106.1| hypothetical protein Namu_2760 [Nakamurella multipartita DSM 44233]
Length = 305
Score = 62.2 bits (150), Expect = 1e-07, Method: Composition-based stats.
Identities = 40/216 (18%), Positives = 75/216 (34%), Gaps = 5/216 (2%)
Query: 112 SLNILLVVRLVVPIIFLILGIIWIFGYDKLLEY--PFQLRVGAVILIGYVGFCAPSVWIS 169
SL ++L +L++ + +LG+ + P V A I +GF P + I
Sbjct: 93 SLPVVLGRKLILAVAGPVLGVGLTVVASGWAGFHIPAGSMVAAAIACAAIGFFIPDLRIR 152
Query: 170 NLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAEL 229
R+ + A LDL + + + +AL A G S P
Sbjct: 153 REAHGRRVEFRHALGAYLDLTSLEMAGSAAPAEALPTAAR--VGASWPFLLIRDTLYRAA 210
Query: 230 SFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEK 289
+ VA + +R + +R+ + G + +L R L + +
Sbjct: 211 RGGRSPWVALSDLGSRIGVPELRDLGGMIELVAHDGARVRSTLAARAQTMRRRELADLQG 270
Query: 290 KAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDT 325
A + + I+ I+ I PA I+++
Sbjct: 271 NAGKADQSMRLAQILVAF-GFIIFIGYPAFAVILNS 305
>gi|330976794|gb|EGH76830.1| type II secretion system protein [Pseudomonas syringae pv. aptata
str. DSM 50252]
Length = 294
Score = 62.2 bits (150), Expect = 1e-07, Method: Composition-based stats.
Identities = 34/178 (19%), Positives = 69/178 (38%), Gaps = 5/178 (2%)
Query: 132 IIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLL 191
+ ++ KL+ Y VGA+ ++ V V++S + R + + P LD +
Sbjct: 74 ALSLYALLKLIGYAPAGVVGALSVLLAVPLTL-RVFVSWRYEVRVRRMIQQLPQLLDHTV 132
Query: 192 ICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCV 251
++SG ++ A V I PL + M + + A +F + D
Sbjct: 133 RSLKSGRTLADA---VLHGIDATDQPLKDGMSRIERNVQLGVSLPDAARDFAELYERDEF 189
Query: 252 RNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPV 309
L + RYG + + + L+ R + +A + ++T ++ LP+
Sbjct: 190 HLFAIGLRVNHRYGGNASELMENLIKLIRDREQAGRQLRAMTGETRMTAV-VLALLPI 246
>gi|330895622|gb|EGH27929.1| type II secretion system protein [Pseudomonas syringae pv. japonica
str. M301072PT]
Length = 293
Score = 62.2 bits (150), Expect = 1e-07, Method: Composition-based stats.
Identities = 33/180 (18%), Positives = 69/180 (38%), Gaps = 5/180 (2%)
Query: 132 IIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLL 191
+ ++ L+ Y VGA+ ++ V V++S + R + + P LD +
Sbjct: 73 ALSLYALLILIGYATAGVVGALSVLLAVPLTL-RVFVSWRYEVRVRRMIQQLPQLLDHTV 131
Query: 192 ICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCV 251
++SG ++ A V I PL + M + + A +F + D
Sbjct: 132 RSLKSGRTLADA---VLHGIDATDQPLKDGMSRIERNVQLGVSLPDAARDFAELYERDEF 188
Query: 252 RNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLI 311
L + RYG + + + L+ R + +A + ++T ++ LP+ +
Sbjct: 189 HLFAIGLRVNHRYGGNASELMENLIKLIRDREQAGRQLRAMTGETRMTAV-VLALLPISM 247
>gi|331003046|ref|ZP_08326558.1| hypothetical protein HMPREF0491_01420 [Lachnospiraceae oral taxon
107 str. F0167]
gi|330413090|gb|EGG92465.1| hypothetical protein HMPREF0491_01420 [Lachnospiraceae oral taxon
107 str. F0167]
Length = 227
Score = 62.2 bits (150), Expect = 1e-07, Method: Composition-based stats.
Identities = 30/196 (15%), Positives = 75/196 (38%), Gaps = 15/196 (7%)
Query: 140 KLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGIS 199
L Y F V ++ F P+ L+ ++ + + +A+ ++ + +G S
Sbjct: 7 ALGSYIFYKSVIIFFVLLPFCFLYPNFKRKELINVKKRKLVLEFKEAIMIISSLLSAGYS 66
Query: 200 IDQALRRVAEDIGGQSVP---LSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQ 256
++ +++ ++ + +E + + + AF++ R+ + +R+ +
Sbjct: 67 LENSIKEALVELRLLYSKDNLIIKEFEYINQLIYMNISVERAFDDLAYRSHSEDIRSFAK 126
Query: 257 ALIQSDRYGTS----IGDSLRVLVSETRSERLMEAEKKAASLGPKL---TVPMIIFFLPV 309
L + R G I ++ V+ + R + E+ K +V + V
Sbjct: 127 VLRIAKRSGGELVSIISHTVNVIADKVRIK-----EEIITMTAAKRFEQSVMNVFPLFIV 181
Query: 310 LILVIIGPAILSIIDT 325
L + I P +I+ T
Sbjct: 182 LYIDISSPGFFNIMYT 197
>gi|292656513|ref|YP_003536410.1| type IV pilus biogenesis complex membrane subunit [Haloferax
volcanii DS2]
gi|291371605|gb|ADE03832.1| type IV pilus biogenesis complex membrane subunit [Haloferax
volcanii DS2]
Length = 708
Score = 62.2 bits (150), Expect = 1e-07, Method: Composition-based stats.
Identities = 38/184 (20%), Positives = 84/184 (45%), Gaps = 5/184 (2%)
Query: 138 YDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESG 197
D +L P+ V V+L + P L +R+ +++R +PD L+LL + G
Sbjct: 453 LDAMLANPYNTTVWFVVLPFAI-VAVPLTVFHELRTRRERTLERRFPDTLNLLSSANQMG 511
Query: 198 ISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQA 257
IS+ ++L V+ + L++E+ ++ + + A F R + + +
Sbjct: 512 ISLVESLALVS---RWSTGALADELRALRNDIRWNHDAHAALMAFATRLNVPQLSRVIRL 568
Query: 258 LIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGP 317
+ R + L V +TR+ +E ++ A +G + + +I +F+ + ++++IG
Sbjct: 569 IASGGRTSGDLSRVLSVAAEDTRNRYKLEKSRRRA-MGSYIAIVVIGYFVYLFVILMIGA 627
Query: 318 AILS 321
+ L
Sbjct: 628 SYLG 631
Score = 54.1 bits (129), Expect = 3e-05, Method: Composition-based stats.
Identities = 31/202 (15%), Positives = 60/202 (29%), Gaps = 5/202 (2%)
Query: 117 LVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWI-SNLVQKR 175
++ P+ + + V V + G ++ + + R
Sbjct: 103 VLANASSPVSLGVATGYVAPLAPYKVPILGAALVALVGGLAAAGTYYARYYLPKSRAEMR 162
Query: 176 QSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELS-FLPN 234
SI P A+ + G+S + +R VA+ +S E + ++ F +
Sbjct: 163 GRSIDILLPHAIVYMYALSHGGMSFLEVIRSVAD--APDYGEVSREFEMIARDMDLFGND 220
Query: 235 RQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASL 294
A N N T L+ G + L + E E E +L
Sbjct: 221 LFTALRNSRNLTPSINFEQFLDDLLSVLDSGGDVTAFLDRESATYLEEARDEQEDFIETL 280
Query: 295 GPKL-TVPMIIFFLPVLILVII 315
P+L++V +
Sbjct: 281 SMLSEVFVAAFVAAPLLLIVTL 302
>gi|313906428|ref|ZP_07839765.1| conserved hypothetical protein [Eubacterium cellulosolvens 6]
gi|313468729|gb|EFR64094.1| conserved hypothetical protein [Eubacterium cellulosolvens 6]
Length = 238
Score = 62.2 bits (150), Expect = 1e-07, Method: Composition-based stats.
Identities = 36/206 (17%), Positives = 81/206 (39%), Gaps = 12/206 (5%)
Query: 131 GIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLL 190
++W G + + L + + L KR+ + + D L L
Sbjct: 9 ALLWGCGLGGFVVWICYRSFWGFPLAAVIAGVYVRMKREELAWKRKQLLHYHFRDFLAAL 68
Query: 191 LICVESGISIDQALRRVAEDIG---GQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQ 247
+ +G S++ +++ A+D+ G S L E+ + ++ F +V F + R+
Sbjct: 69 HTAMLAGYSVENGVKQAAKDLERLYGSSDVLCVELHDILRQMHFQKPVEVLFRDLGRRSG 128
Query: 248 MDCVRNATQALIQSDRYGTSIGDSL----RVLVSETRSERLMEAEKKAASLGPKLTVPMI 303
++ +RN + L + R G ++ L R L + +++ ++ A KL
Sbjct: 129 LEDIRNFAEILSIAKRTGGNMNMILQCTWRNLCGKIDTKQEIDTMIAARKYEQKL----- 183
Query: 304 IFFLPVLILVIIGPAILSIIDTMKDH 329
+ +P I++ + I+ M +
Sbjct: 184 MSLMPAGIILYLRLTFQGFIERMYGN 209
>gi|304315797|ref|YP_003850942.1| type II secretion system F domain [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
gi|302777299|gb|ADL67858.1| Type II secretion system F domain [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
Length = 275
Score = 62.2 bits (150), Expect = 1e-07, Method: Composition-based stats.
Identities = 44/230 (19%), Positives = 90/230 (39%), Gaps = 16/230 (6%)
Query: 98 IVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIG 157
I L+AAG + + ++ L +I+I+ L L+ +IL+
Sbjct: 59 INEMLKAAGNPLKLTAETYIIAHL----GLFSFAVIYIY-----LTKMVDLQAILLILLS 109
Query: 158 YVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVP 217
G ++I ++ + R +R P+ +DL + + + ++ A+ +S
Sbjct: 110 IFGL---DLYIQSVRKDRIEKFRREMPEIVDLFELGATADVPLEDIFLITAQ--SAKSKE 164
Query: 218 LSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVS 277
+ + AE ++VA F N + AL+Q DR G ++ D L L S
Sbjct: 165 VRNAITKLAAEYIMTREKEVALRKFANEVSLPEANVLAMALLQGDRTGRTV-DILSTLSS 223
Query: 278 ETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
+ + ++ S+ K+ I F + ++ + I +I +K
Sbjct: 224 SLFNTAASKVARQDKSMEYKVLSA-IFFLMASIVTLYIYSYFTNIQSGLK 272
>gi|91774310|ref|YP_567002.1| type II secretion system protein [Methanococcoides burtonii DSM
6242]
gi|91713325|gb|ABE53252.1| type II secretion system protein F domain [Methanococcoides
burtonii DSM 6242]
Length = 647
Score = 62.2 bits (150), Expect = 1e-07, Method: Composition-based stats.
Identities = 27/167 (16%), Positives = 67/167 (40%), Gaps = 4/167 (2%)
Query: 154 ILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGG 213
++ + P V +R S++ +P+ L+ L E+GI + A+ VA+
Sbjct: 412 VMFATLLVFVPFVIFYESKARRIRSMEDEFPEFLNRLASINEAGILLIDAINMVAQ---T 468
Query: 214 QSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLR 273
+ L E+ LS+ + F F +R + L+++ + I L
Sbjct: 469 KIGVLQSEVRRMQKGLSWGQDLSSVFMEFESRVKTTMNSRIITLLVKASESTSDIIGVLH 528
Query: 274 VLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAIL 320
+ + ++ + ++++ + L + I F + + I+ ++ +
Sbjct: 529 IAAKDAELQQNLR-KERSTEMAVYLFIVYISFAVFLFIIYVLTAYFI 574
Score = 42.2 bits (98), Expect = 0.10, Method: Composition-based stats.
Identities = 27/182 (14%), Positives = 65/182 (35%), Gaps = 10/182 (5%)
Query: 144 YPFQLRVGAVILIGYVGFCAPSVWISN---LVQKRQSSIKRAWPDALDLLLICVES-GIS 199
P + ++IL + +++ RQS I ++ P + + +S G++
Sbjct: 88 LPAFSVIFSLILFVGTAWITFRLFLHYPLIKANIRQSYIDQSLPHGVAYMYALTKSGGVT 147
Query: 200 IDQALRRVAEDIGGQSVPLSEEMLLTIAELS-FLPNRQVAFENFYNRTQMDCVRNATQAL 258
+ A R ++E ++E + ++ F + A N + T ++ +
Sbjct: 148 VHDAFRSLSEH-SHVYGLAADEFGYIVRDMDYFGMDVLSAIRNCSSTTSSTNLKAFLDGI 206
Query: 259 IQSDRYGTSIGDSLRVLVS----ETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVI 314
+ G + LR + ++ E + V ++ ++ILV+
Sbjct: 207 LFVISSGGDLNSYLRSKTDQFHLDATKQQKTFLEMLGVLAEAYVAVFVVGPIFMIIILVV 266
Query: 315 IG 316
G
Sbjct: 267 FG 268
>gi|110626526|gb|ABG79010.1| TadB [Yersinia ruckeri]
Length = 296
Score = 62.2 bits (150), Expect = 1e-07, Method: Composition-based stats.
Identities = 25/155 (16%), Positives = 62/155 (40%), Gaps = 5/155 (3%)
Query: 173 QKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFL 232
+++ ++P+ L ++ + SG +++Q L R ++I G L E L L+
Sbjct: 115 KQKNKHFNESFPEVLTIMNMAASSGANLNQILERCGKEIQG---ELGNEFNLIYRRLNLG 171
Query: 233 PNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAA 292
++ F + Y + T ++ + + G + D ++ + ++ K
Sbjct: 172 EAPEIVFNDAYRKFNYAEFHFFTSVILLNIKQGGQLSDLIKKMHKGITESNKLKQRKAIM 231
Query: 293 SLGPKLT--VPMIIFFLPVLILVIIGPAILSIIDT 325
+ ++T V +I + L I P + + +
Sbjct: 232 TAQIRMTTNVVSLIPIVFTAFLYYIDPNSIETLWS 266
>gi|313824430|gb|EFS62144.1| type II secretion system F domain protein [Propionibacterium acnes
HL036PA2]
Length = 147
Score = 61.8 bits (149), Expect = 1e-07, Method: Composition-based stats.
Identities = 32/144 (22%), Positives = 64/144 (44%), Gaps = 6/144 (4%)
Query: 180 KRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAF 239
P+AL +L +E+G+ + A+ VAE + G P +E++ + L+ A+
Sbjct: 6 AAQLPEALLMLSSAMEAGLPLRSAVTTVAESLEG---PCAEDLRRLASSLAAGVPDSRAW 62
Query: 240 ENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLT 299
+ + ++ R+ Q + ++ G I + L ++ + + EKKA G
Sbjct: 63 NDLAS---VEVWRDPAQDVSRAVDSGEGISELLSAHAAQLQVAAAEKTEKKARKAGVDAI 119
Query: 300 VPMIIFFLPVLILVIIGPAILSII 323
P++ LP LV + P I ++
Sbjct: 120 GPLVCCHLPAFSLVGVVPIIAGMV 143
>gi|311744032|ref|ZP_07717838.1| integral membrane protein [Aeromicrobium marinum DSM 15272]
gi|311313162|gb|EFQ83073.1| integral membrane protein [Aeromicrobium marinum DSM 15272]
Length = 304
Score = 61.8 bits (149), Expect = 1e-07, Method: Composition-based stats.
Identities = 39/287 (13%), Positives = 93/287 (32%), Gaps = 8/287 (2%)
Query: 15 AVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRT 74
+ + ++ + +++ G + ++ R + T+L D
Sbjct: 1 MILVLACGALAGVGALLLVLQFDHGTGTAAAELARLDAARQRSTRTTTLTADRRHQTESQ 60
Query: 75 RDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIW 134
R + + + V + L G S+ L + ++ + L +
Sbjct: 61 RLRRVGSTVRAGMEARGWKVPAGVRADLAVMG----RSVETHLGMSVLAGVAGLFAPAVA 116
Query: 135 IFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICV 194
+ + + + ++ G GF + +S ++R+ + LDL+ + +
Sbjct: 117 LSPLIYAFDLSLTIPLWLALVGGAGGFVLATAQLSTEAKERRRDFRHVVSAFLDLVSMNL 176
Query: 195 ESGISIDQALRRVAEDIGGQSVP-LSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRN 253
G + +AL A G ++ L + M + A + + + + +
Sbjct: 177 AGGRGVPEALSAAAGLSDGWAMVRLRDAMESARLQ---GVTPWAALGDLGDEMAVKELSD 233
Query: 254 ATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV 300
AL G + SL + R L +AE +A + V
Sbjct: 234 LAAALALVAEDGAKVRQSLAARAASMRQRELTDAEGRAEQQSQSMLV 280
>gi|331086802|ref|ZP_08335879.1| hypothetical protein HMPREF0987_02182 [Lachnospiraceae bacterium
9_1_43BFAA]
gi|330409968|gb|EGG89403.1| hypothetical protein HMPREF0987_02182 [Lachnospiraceae bacterium
9_1_43BFAA]
Length = 251
Score = 61.8 bits (149), Expect = 1e-07, Method: Composition-based stats.
Identities = 31/211 (14%), Positives = 79/211 (37%), Gaps = 19/211 (9%)
Query: 120 RLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSI 179
+ + L+ GI ++F +G ++ ++ +W ++K+Q
Sbjct: 21 KAAFKGLALLSGIAYLFY---------DFFLGGLMFSPFLVIYL-RIWEKQYIKKQQQEF 70
Query: 180 KRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVP---LSEEMLLTIAELSFLPNRQ 236
+ +L + + G S + AL+ A+D+ + E I +L+ +
Sbjct: 71 CAQFKMSLQSMSSALNVGYSAENALKETAKDLSLIYKKDTRIMREYTYMIHQLNMNVPLE 130
Query: 237 VAFENFYNRTQMDCVRNATQALIQSDRYGTS----IGDSLRVLVSETRSERLMEAEKKAA 292
++ F +R + V N + + R G I ++++ + + +R +E A
Sbjct: 131 QIWKEFADRVGQEDVSNFVSVFVAAKRAGGDSIEMIRNAVKQICEKIEVKREIEMTMSAK 190
Query: 293 SLGPKLTVPMIIFFLPVLILVIIGPAILSII 323
L ++ + + + I P + ++
Sbjct: 191 KLEFQVMSVVPFGI--IFYMRIAFPDFVEVL 219
>gi|300857636|ref|YP_003782619.1| hypothetical protein cpfrc_00219 [Corynebacterium
pseudotuberculosis FRC41]
gi|300685090|gb|ADK28012.1| hypothetical protein cpfrc_00219 [Corynebacterium
pseudotuberculosis FRC41]
Length = 207
Score = 61.8 bits (149), Expect = 1e-07, Method: Composition-based stats.
Identities = 28/138 (20%), Positives = 59/138 (42%), Gaps = 5/138 (3%)
Query: 187 LDLLLICVESGISIDQALRRVA--EDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYN 244
LDL CV+SG++ Q+ VA E+ + + L L + A+++
Sbjct: 67 LDLFAACVQSGLTPSQSAFAVAATEESSPRDARVRSGWLEVAMMLEMGMPAERAWQSLAE 126
Query: 245 RTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMII 304
+ + S+R G ++ ++ L + R+ + +A G + +P+ +
Sbjct: 127 ---HPALGDLVTVARASERSGATLAEACERLARQLRARASDLSLARAERAGVLIALPLTV 183
Query: 305 FFLPVLILVIIGPAILSI 322
FLP L+ + P ++S+
Sbjct: 184 CFLPAFFLLGLAPVVISL 201
>gi|52550504|gb|AAU84353.1| conserved hypothetical protein [uncultured archaeon GZfos9D8]
Length = 322
Score = 61.8 bits (149), Expect = 1e-07, Method: Composition-based stats.
Identities = 29/155 (18%), Positives = 69/155 (44%), Gaps = 4/155 (2%)
Query: 172 VQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSF 231
V+ + I +P L L SG+ + A+ VA+ GQ L++ + +++++
Sbjct: 98 VKTKIRKIDAHFPSLLGDLAHLRRSGMPLGAAMGLVAQ---GQYGVLTKPIKWIDSQMTW 154
Query: 232 LPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKA 291
+ A F R +R + +I++ R G IG+ L + + +++E ++K+
Sbjct: 155 GVTFEDALARFAKRYPTPLIRRSISIIIEASRAGGEIGEILEAVAEDAHELKILEVKRKS 214
Query: 292 ASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
+ + F +I+++ + L +++ M
Sbjct: 215 ETTPYLAVSYLSYFVFVAVIMILCT-SFLPMMEVM 248
>gi|66047621|ref|YP_237462.1| type II secretion system protein [Pseudomonas syringae pv. syringae
B728a]
gi|63258328|gb|AAY39424.1| type II secretion system protein [Pseudomonas syringae pv. syringae
B728a]
Length = 294
Score = 61.8 bits (149), Expect = 1e-07, Method: Composition-based stats.
Identities = 33/180 (18%), Positives = 69/180 (38%), Gaps = 5/180 (2%)
Query: 132 IIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLL 191
+ ++ L+ Y VGA+ ++ V V++S + R + + P LD +
Sbjct: 74 ALSLYALLILIGYAMAGVVGALSVLLAVPLTL-RVFVSWRYEVRVRRMIQQLPQLLDHTV 132
Query: 192 ICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCV 251
++SG ++ A V I PL + M + + A +F + D
Sbjct: 133 RSLKSGRTLADA---VLHGIDATDQPLKDGMSRIERNVQLGVSLPDAARDFAELYERDEF 189
Query: 252 RNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLI 311
L + RYG + + + L+ R + +A + ++T ++ LP+ +
Sbjct: 190 HLFAIGLRVNHRYGGNASELMENLIKLIRDREQAGRQLRAMTGETRMTAV-VLALLPISM 248
>gi|10956308|ref|NP_052757.1| hypothetical protein pxo1_61 [Bacillus anthracis]
gi|227811507|ref|YP_002811518.1| hypothetical protein BAMEG_A0082 [Bacillus anthracis str. CDC 684]
gi|4894277|gb|AAD32365.1| pXO1-61 [Bacillus anthracis]
gi|227007935|gb|ACP17677.1| conserved hypothetical protein [Bacillus anthracis str. CDC 684]
Length = 236
Score = 61.8 bits (149), Expect = 1e-07, Method: Composition-based stats.
Identities = 36/205 (17%), Positives = 77/205 (37%), Gaps = 21/205 (10%)
Query: 66 DSASSRLRTRDSKSLRNFVKKLNLKAILVD--ENIVNKLRAAGFRSEYSLNILLVVRLVV 123
++A + ++ + + L+ K + + E I KL AG + L +++
Sbjct: 36 ENAKRIEKKNLNQMMLAPFQSLSHKYLTEEKKEQIQKKLEEAGL--DTKPEEYLKMKVAY 93
Query: 124 PIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAW 183
P+IF + +I +D L +LI + + P + +++ + K
Sbjct: 94 PVIFTSVFLICTVFHDYYL-------FKVGVLISPLLYFYPDYLLKKRIKQAIEARKFEL 146
Query: 184 PDALDLLLICVESGISIDQ---ALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFE 240
P+ L +L +++ +++ A + L+ E+ E+ + F
Sbjct: 147 PEYLIPMLQLLKTHTTLEAVKKAQIYAGRHLRPYVSTLTAEL-----EMYAGSD--QPFR 199
Query: 241 NFYNRTQMDCVRNATQALIQSDRYG 265
NF V T AL Q+ + G
Sbjct: 200 NFAAALNSPEVNTFTIALQQAQKNG 224
>gi|229182303|ref|ZP_04309578.1| hypothetical protein bcere0005_56120 [Bacillus cereus 172560W]
gi|228601159|gb|EEK58705.1| hypothetical protein bcere0005_56120 [Bacillus cereus 172560W]
Length = 288
Score = 61.8 bits (149), Expect = 1e-07, Method: Composition-based stats.
Identities = 55/267 (20%), Positives = 108/267 (40%), Gaps = 22/267 (8%)
Query: 66 DSASSRLRTRDSKSLRNFVKKLNLKAILVD--ENIVNKLRAAGFRSEYSLNILLVVRLVV 123
++A + ++ + + L+ K + + E I KL AG +E L +++
Sbjct: 36 ENAKRIEKKNLNQMMLAPFQSLSHKYLTEEKKEQIQKKLEEAGLDTE--PEEYLRMKVAY 93
Query: 124 PIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAW 183
PIIF + +I +D L L+ + + P + N ++ + K
Sbjct: 94 PIIFTSVFLICTVFHDYYL-------FKVGALMSPLLYFYPDYLLKNRSKQAIEARKFEL 146
Query: 184 PDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFY 243
P+ L +L +++ +++ + AE G+ L + AEL F NF
Sbjct: 147 PEYLIPMLQLLKTHTTLEA--VKKAEIYAGRH--LRPYVSTLTAELEMYAGSDQPFRNFA 202
Query: 244 NRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMI 303
V T AL Q+ + T SLR++ ++ + R ++ E + K PM
Sbjct: 203 AALNSPEVNTFTIALQQAQK--TDKVQSLRIMDAQIKMMRELKHENYNRLIQNK---PME 257
Query: 304 I--FFLPVLILVIIGPAILSIIDTMKD 328
+ F + V+ ++I P ++ I M+
Sbjct: 258 MNKFNVAVIGCIVIYPMVIVIQSLMQG 284
>gi|229113405|ref|ZP_04242856.1| hypothetical protein bcere0018_55780 [Bacillus cereus Rock1-15]
gi|228670019|gb|EEL25411.1| hypothetical protein bcere0018_55780 [Bacillus cereus Rock1-15]
Length = 281
Score = 61.8 bits (149), Expect = 1e-07, Method: Composition-based stats.
Identities = 46/258 (17%), Positives = 98/258 (37%), Gaps = 23/258 (8%)
Query: 66 DSASSRLRTRDSKSLRNFVKKLNLKAILVDEN--IVNKLRAAGFRSEYSLNILLVVRLVV 123
++A + ++ + + L+ K + ++ I KL AG + L +++
Sbjct: 29 ENAKRIEKKNLNQMMLAPFQSLSHKYLTEEKKELIQKKLEEAGL--DTKPEEYLKMKVAY 86
Query: 124 PIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAW 183
PIIF + +I +D L +LI + + P + +++ + K
Sbjct: 87 PIIFTSVFLICTVFHDYYL-------FKVGVLISPLLYFYPDYLLKIRIKQAIEARKFEL 139
Query: 184 PDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFY 243
P+ L +L +++ +++ + A+ G+ L + AEL F NF
Sbjct: 140 PEYLIPMLQLLKTHTTLEA--VKKAQIYAGRH--LRPYVSTLTAELEMYAGSDQPFRNFA 195
Query: 244 NRTQMDCVRNATQALIQSDRYGTSIGDSLRV---LVSETRSERLMEAEKKAASLGPKL-- 298
V T AL Q+ + T SLR+ + R + + + ++
Sbjct: 196 AALNSPEVNTFTIALQQAQK--TDKVQSLRIMDAQIKMMRELKHENYNRLIQNKPMEMNK 253
Query: 299 -TVPMIIFFLPVLILVII 315
V +I L ++++I
Sbjct: 254 FNVALIGCMLTSPMVILI 271
>gi|229073927|ref|ZP_04207005.1| hypothetical protein bcere0025_60150 [Bacillus cereus F65185]
gi|228709167|gb|EEL61263.1| hypothetical protein bcere0025_60150 [Bacillus cereus F65185]
Length = 288
Score = 61.8 bits (149), Expect = 1e-07, Method: Composition-based stats.
Identities = 51/235 (21%), Positives = 94/235 (40%), Gaps = 20/235 (8%)
Query: 96 ENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVIL 155
E I KL AG +E L +++ PIIF + +I +D L L
Sbjct: 68 EQIQKKLEEAGLDTE--PEEYLKMKVAYPIIFTSVFLICTVFHDYYL-------FKVGAL 118
Query: 156 IGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQS 215
+ + + P + ++ + K P+ L +L +++ +++ + AE G+
Sbjct: 119 MSPLLYFYPDYLLKKRSKQAIEARKFELPEYLIPMLQLLKTHTTLEA--VKKAEIYAGRH 176
Query: 216 VPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVL 275
L + AEL F NF V T AL Q+ + T SLR++
Sbjct: 177 --LRPYVSTLTAELEMYAGSDQPFRNFAAALNSPEVNTFTIALQQAQK--TDKVQSLRIM 232
Query: 276 VSETRSERLMEAEKKAASLGPKLTVPMII--FFLPVLILVIIGPAILSIIDTMKD 328
++ + R ++ E + K PM + F + V+ ++I P ++ I M+
Sbjct: 233 DAQIKMMRELKHENYNRLIQNK---PMEMNKFNVAVIGCIVIYPMVIVIQSLMQG 284
>gi|326383472|ref|ZP_08205159.1| Type II secretion system F domain-containing protein [Gordonia
neofelifaecis NRRL B-59395]
gi|326197878|gb|EGD55065.1| Type II secretion system F domain-containing protein [Gordonia
neofelifaecis NRRL B-59395]
Length = 188
Score = 61.8 bits (149), Expect = 1e-07, Method: Composition-based stats.
Identities = 24/139 (17%), Positives = 52/139 (37%), Gaps = 5/139 (3%)
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQ 247
D L +C+ +G+ + A A L L+ + A+
Sbjct: 51 DTLAVCLRAGLPLATA---AAVAAETAPPELRSSFTRAADLLALGADPDQAWAPVDA--D 105
Query: 248 MDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFL 307
+ ++ R G+++ DS+ TR + + A G K++ P+ + FL
Sbjct: 106 SVDFAELAALISRASRAGSALADSVGGFADATRRRAENASLEAAERAGVKISGPLGLCFL 165
Query: 308 PVLILVIIGPAILSIIDTM 326
P + + I P ++ + ++
Sbjct: 166 PAFVCLGIVPVVIGLASSL 184
>gi|257069183|ref|YP_003155438.1| Flp pilus assembly protein TadB [Brachybacterium faecium DSM 4810]
gi|256560001|gb|ACU85848.1| Flp pilus assembly protein TadB [Brachybacterium faecium DSM 4810]
Length = 290
Score = 61.8 bits (149), Expect = 1e-07, Method: Composition-based stats.
Identities = 36/172 (20%), Positives = 74/172 (43%), Gaps = 9/172 (5%)
Query: 121 LVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIK 180
VP + + LG++ G + V + IG V P++ + + ++R ++++
Sbjct: 57 AAVPALSVGLGLVVAAGL-----WAGSSAVVPSLAIGAVVSLLPTLVLRSAARRRTTAMR 111
Query: 181 RAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFE 240
WP+A+D + + +G+S+ +AL +++ + + P E L + + +
Sbjct: 112 EVWPEAVDHINSAIRAGLSLPEALVQLSRNGPEELRPAFAEYAL---DYQASGDFASCLD 168
Query: 241 NFYNRTQMDCVRNATQALIQS-DRYGTSIGDSLRVLVSETRSERLMEAEKKA 291
R +AL + D GT +G LR L + R + AE +A
Sbjct: 169 RLKIRLADPVGDRIVEALRITRDVGGTDLGSLLRTLSAFLREDARTRAELEA 220
>gi|41615060|ref|NP_963558.1| hypothetical protein NEQ267 [Nanoarchaeum equitans Kin4-M]
gi|40068784|gb|AAR39119.1| NEQ267 [Nanoarchaeum equitans Kin4-M]
Length = 346
Score = 61.8 bits (149), Expect = 1e-07, Method: Composition-based stats.
Identities = 44/212 (20%), Positives = 86/212 (40%), Gaps = 5/212 (2%)
Query: 113 LNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLV 172
+ + + + I+ IL + F + L + + + + V AP + ++
Sbjct: 1 MRQYQYIAIGLGILLSILVLYLGFLFLGNLLFKDVSYILLIATLSIVLGLAPYMVYQYMI 60
Query: 173 QKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFL 232
+ Q +++ +P L L V SGIS+ AL+ A L++ + + LS+
Sbjct: 61 AREQKALESVYPSFLRDLAESVSSGISLIYALKLTAN---ADYGALNKYLRKLVIWLSWG 117
Query: 233 PNRQVAFENFYNRTQ-MDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKA 291
A E F +R A + L++ + G I +LR+L + +
Sbjct: 118 IPFPKAMERFNKYFYFSPAIRRANEILLEIYKSGGDIVKTLRLLAENI-EKTSEMYKDII 176
Query: 292 ASLGPKLTVPMIIFFLPVLILVIIGPAILSII 323
+ + K+ V +IF + V I VII P ++
Sbjct: 177 SQVKSKVFVIYMIFLILVAIAVIIKPIFAEVL 208
>gi|296118089|ref|ZP_06836671.1| membrane protein [Corynebacterium ammoniagenes DSM 20306]
gi|295968975|gb|EFG82218.1| membrane protein [Corynebacterium ammoniagenes DSM 20306]
Length = 208
Score = 61.8 bits (149), Expect = 1e-07, Method: Composition-based stats.
Identities = 30/139 (21%), Positives = 60/139 (43%), Gaps = 12/139 (8%)
Query: 187 LDLLLICVESGISIDQA---LRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFY 243
++L + CV +G+SI QA + VAE+ + L+ + A+ +
Sbjct: 74 IELFVACVRAGLSIQQATSAVSVVAEEPTVTY------WKQVNSLLALGVEPERAWVHMQ 127
Query: 244 NRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMI 303
+ + S+ G +I + LV R++ A KA G +++P+
Sbjct: 128 PVPGLQELARLVMM---SEHSGAAIASGCQRLVDTLRADATSSAIAKAERAGVFISLPLA 184
Query: 304 IFFLPVLILVIIGPAILSI 322
+ FLP I++ + P ++S+
Sbjct: 185 LCFLPAFIILGLVPVVISL 203
>gi|76802644|ref|YP_330739.1| transmembrane protein (type II secretion system proteins TadC)
[Natronomonas pharaonis DSM 2160]
gi|76558509|emb|CAI50101.1| transmembrane protein (homolog 2 to type II secretion system
proteins TadC) [Natronomonas pharaonis DSM 2160]
Length = 671
Score = 61.8 bits (149), Expect = 1e-07, Method: Composition-based stats.
Identities = 34/222 (15%), Positives = 91/222 (40%), Gaps = 12/222 (5%)
Query: 109 SEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWI 168
+ ++ + V V + + + + ++ P V + Y+ +++
Sbjct: 384 NPLAVLAITVPASAVLVGMSVSAGVAPLSLEGMIAAPVMGTFFWVYVPLYINLIPLTLFY 443
Query: 169 SNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAE 228
V+ R+ I + D L L ++G+++ +++R VA+ G+ L+EE + A+
Sbjct: 444 EWNVRSRRK-ITDSLSDDLRKLSSANDTGMTLLESIRVVADTSSGR---LAEEFRVMYAK 499
Query: 229 LSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRV--LVSETRSERLME 286
+++ + + A F N+ + + + + ++ + I L SE + +
Sbjct: 500 VNYGTSLKTALREFNNKYHIPRLARTLKLISKAQEASSQITQVLSTAAQASENQDD---- 555
Query: 287 AEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMKD 328
++ ++ + +II V +L ++ + +DTM
Sbjct: 556 -IERNRKSRTRMQMVIIIMTY-VTLLGVMALLKVEFLDTMAG 595
Score = 42.2 bits (98), Expect = 0.11, Method: Composition-based stats.
Identities = 26/172 (15%), Positives = 58/172 (33%), Gaps = 10/172 (5%)
Query: 148 LRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGIS---IDQAL 204
L G++ G ++ R+ I D++ + G++ I +A+
Sbjct: 117 LFFGSIGFGAGFGGMVAKPYLE--ADARKREINVLLSDSVSFMYALSVGGLNQLEILEAM 174
Query: 205 RRVAEDIGGQSVPLSEEMLLTIAELS-FLPNRQVAFENFYNRTQMDCVRNATQALIQSDR 263
R +S+E + E F + + A N +T + + ++
Sbjct: 175 ARA----DDTYGEVSQEFQSIVLETEYFDTDYRTAIRNQAMQTPSEELSQFLTDMLSIIN 230
Query: 264 YGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVII 315
G + L + E E +L + M + P+L+++I+
Sbjct: 231 SGGDMEQFLEDQKEKHMRTSKQEQETVLETLELFGEMYMTLSLFPLLLIIIV 282
>gi|266621096|ref|ZP_06114031.1| conserved hypothetical protein [Clostridium hathewayi DSM 13479]
gi|288867252|gb|EFC99550.1| conserved hypothetical protein [Clostridium hathewayi DSM 13479]
Length = 245
Score = 61.8 bits (149), Expect = 1e-07, Method: Composition-based stats.
Identities = 30/188 (15%), Positives = 71/188 (37%), Gaps = 7/188 (3%)
Query: 142 LEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISID 201
+ Y F + I++ G C P + ++L +R + + + + +L + +G S++
Sbjct: 27 VSYVFYRSLPVFIMLSPFGLCYPLIKKADLKDQRLKRLNLEFKEGILILSSFLSAGYSVE 86
Query: 202 QALRRVAEDIG---GQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQAL 258
A ++ G S + E ++ + F +R+ +D VRN +
Sbjct: 87 NAFSASIRELAVMYGASGMMVLEFSHMEGQIRMNRPVEQVLMEFGDRSGLDDVRNFAEVF 146
Query: 259 IQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVII--- 315
+ R G + + R + + E+ A K I+ +P +++ +
Sbjct: 147 AAAKRSGGELVSIINHTSGVIRDK-IQIQEEIATMTAAKQFEQKIMNLIPFFLVLYVDVS 205
Query: 316 GPAILSII 323
P ++
Sbjct: 206 SPGFFDMM 213
>gi|213966042|ref|ZP_03394231.1| type II secretion system protein [Corynebacterium amycolatum SK46]
gi|213951337|gb|EEB62730.1| type II secretion system protein [Corynebacterium amycolatum SK46]
Length = 217
Score = 61.8 bits (149), Expect = 1e-07, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 59/138 (42%), Gaps = 8/138 (5%)
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
++ C+ SG+ + QA+ A+ G + L+E + A L+ A+++
Sbjct: 81 IIGACLSSGMPLSQAMEAAAD---GANPELAEPLRQCSARLAVGA--HSAWDSLAA---T 132
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP 308
+ A ++ GT + +L + RS+ A+ A G + P+ + FLP
Sbjct: 133 PALEPLATAGRRASESGTVLAQALEDTAATYRSQAHDAAQAVAEKAGVLIAGPLALCFLP 192
Query: 309 VLILVIIGPAILSIIDTM 326
+++ + P I + D M
Sbjct: 193 AFVVLGLVPTIAGLADEM 210
>gi|228949330|ref|ZP_04111593.1| hypothetical protein bthur0007_54460 [Bacillus thuringiensis
serovar monterrey BGSC 4AJ1]
gi|228989137|ref|ZP_04149155.1| hypothetical protein bthur0001_57500 [Bacillus thuringiensis
serovar tochigiensis BGSC 4Y1]
gi|228770564|gb|EEM19111.1| hypothetical protein bthur0001_57500 [Bacillus thuringiensis
serovar tochigiensis BGSC 4Y1]
gi|228810313|gb|EEM56671.1| hypothetical protein bthur0007_54460 [Bacillus thuringiensis
serovar monterrey BGSC 4AJ1]
Length = 308
Score = 61.8 bits (149), Expect = 1e-07, Method: Composition-based stats.
Identities = 37/264 (14%), Positives = 97/264 (36%), Gaps = 24/264 (9%)
Query: 60 ITSLQKDSASSRLRTRDSKSLRNFVKKLNLK---AILVDENIVNKLRAAGFRSEYSLNIL 116
+ ++K+ + + +T+ K L +K N K + +E + K + A + +
Sbjct: 49 VEEIEKEKSQASQQTQLEKYLTPLLKLTNSKIKISASKEEELRRKFKEANMSMDPA--SF 106
Query: 117 LVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQ 176
+ +++ P+I I + YD + + + + + P + ++ +
Sbjct: 107 YMYKILYPVICFIFLLFIGMAYDNTI-------ILIMAAGSILTYFYPDYNLKKRLKIAK 159
Query: 177 SSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQS-VPLSEEMLLTIAELSFLPNR 235
K P L L + +++ + D + ++++ G P EE+++ E+
Sbjct: 160 ERRKFELPSYLMPLGVRLQAFTTYDA--VKGSKEMAGPYLRPFVEELII---EMETFQGS 214
Query: 236 QVAFENFYNRTQMDCVRNATQALIQSDRYGTSIG--DSLRVLVSETRSERLMEAEKKAAS 293
F+NF + + AL Q+ + + ++ + +R R ++
Sbjct: 215 NKPFKNFAEKLDIPEAHTFVIALQQAINV-DPVKGREIIQQQIDVSRKLRDQNYNALISA 273
Query: 294 LGPKL---TVPMIIFFLPVLILVI 314
+ V + L V ++
Sbjct: 274 RPLLMNKYNVVTVGCILIVPFTIV 297
>gi|325264273|ref|ZP_08131004.1| putative bacterial type II secretion system protein F domain
protein [Clostridium sp. D5]
gi|324030344|gb|EGB91628.1| putative bacterial type II secretion system protein F domain
protein [Clostridium sp. D5]
Length = 224
Score = 61.8 bits (149), Expect = 1e-07, Method: Composition-based stats.
Identities = 29/193 (15%), Positives = 67/193 (34%), Gaps = 4/193 (2%)
Query: 140 KLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGIS 199
+ Y F A ++ + +W + + ++++ + + ++ + + G S
Sbjct: 4 GMTAYLFYDSWIAALVFIPALYIYLILWKARVCREKEQEFREQFRVSIQTMASALNIGYS 63
Query: 200 IDQALRRVAEDIGGQSVP---LSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQ 256
++ A+R A D+ + +E I +L + +R + V N
Sbjct: 64 VENAVRETARDLKPLFRRDSRIRKEFERMIHQLDINQPVEQVMSELADRVSQEDVENFVI 123
Query: 257 ALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIG 316
+ R G LR V + + E E + KL ++ +P IL +
Sbjct: 124 VFSAAKRTGGDSISILRSAVRDISDKIEAEKEIQTLLASKKLEFK-VMCIIPFGILFYMR 182
Query: 317 PAILSIIDTMKDH 329
A + + +
Sbjct: 183 LAFPEFMQVLYGN 195
>gi|326445374|ref|ZP_08220108.1| putative integral membrane protein [Streptomyces clavuligerus ATCC
27064]
Length = 299
Score = 61.8 bits (149), Expect = 1e-07, Method: Composition-based stats.
Identities = 46/308 (14%), Positives = 107/308 (34%), Gaps = 19/308 (6%)
Query: 22 VSIFSLIYAVVIPSLGSGELEKR--MKSVAVEREILRKQQITSLQKDSASSRLRTRDSKS 79
I + + + G L R + V + R + + +DSA L +
Sbjct: 7 AVIGGALAGLGLVIAARGILPGRPDLGDVLSRMDATRLENLDR-NRDSAPRNLMEKAGAF 65
Query: 80 LRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYD 139
L + L+ +L G S L ++ + + L+L ++ + +
Sbjct: 66 LLRTAGEGTLRL------PRQQLELVG----RSPAAHLGRKIALALYGLLLPVLAVSLAN 115
Query: 140 KLL-EYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGI 198
+ PF + A + + V + P + + + + + A L L+ + +
Sbjct: 116 LVGYPLPFAIPAVAGLGLAVVFWLLPDLQLKQQAVEAKEDFRHAVKAYLRLVQLERAADA 175
Query: 199 SIDQALRRVAEDIGG-QSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQA 257
+ QAL++ AE G + + + E + + + +
Sbjct: 176 APTQALKKAAEVGEGWVFAKIRDTITRAELE---GISPWEGLKRLSIELDVPELGAPADI 232
Query: 258 LIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGP 317
+ + G ++GD+L + A+ +A K+ +P+ + L + + I P
Sbjct: 233 IAIAGEEGAAVGDTLGAQAKSLSGALVTSAKAQANMASEKMVMPVAMLVLIMT-VYIGYP 291
Query: 318 AILSIIDT 325
A+ I+ +
Sbjct: 292 ALSRIMAS 299
>gi|238789151|ref|ZP_04632939.1| Type II secretion system protein F domain protein [Yersinia
frederiksenii ATCC 33641]
gi|238722683|gb|EEQ14335.1| Type II secretion system protein F domain protein [Yersinia
frederiksenii ATCC 33641]
Length = 187
Score = 61.8 bits (149), Expect = 1e-07, Method: Composition-based stats.
Identities = 31/147 (21%), Positives = 65/147 (44%), Gaps = 5/147 (3%)
Query: 170 NLVQKRQSSI-KRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAE 228
L +KR S+ K+ +P+ L ++ + SG SI+ L R +++ G PL E++L
Sbjct: 2 KLSRKRHHSLFKKDFPEVLLMINMASGSGASINHVLERCGQEVSG---PLGHELVLICRR 58
Query: 229 LSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAE 288
L+ + + F + Y R ++ + + G + + L + E +
Sbjct: 59 LNLGESPETVFYDAYQRFNYPEFYFLITIILLNIQQGGQLKELTSRLSQVISKNKTTEQK 118
Query: 289 KKAASLGPKLTVPMIIFFLPVLILVII 315
K + +++V II +PV +++
Sbjct: 119 KSVLTAQTRMSV-NIISAMPVAFSLLL 144
>gi|330969401|gb|EGH69467.1| type II secretion system protein [Pseudomonas syringae pv. aceris
str. M302273PT]
Length = 74
Score = 61.8 bits (149), Expect = 1e-07, Method: Composition-based stats.
Identities = 19/74 (25%), Positives = 32/74 (43%)
Query: 255 TQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVI 314
L Q G SL L RL ++ + L K++V M++F P L++V+
Sbjct: 1 CVILNQLIHQGGGALKSLLTLKQLIDDRRLTRLQEYISKLSAKMSVVMMVFLFPALLIVL 60
Query: 315 IGPAILSIIDTMKD 328
GP ++I +
Sbjct: 61 AGPGFMAISRALGS 74
>gi|302185192|ref|ZP_07261865.1| type II secretion system protein [Pseudomonas syringae pv. syringae
642]
Length = 294
Score = 61.8 bits (149), Expect = 1e-07, Method: Composition-based stats.
Identities = 33/180 (18%), Positives = 69/180 (38%), Gaps = 5/180 (2%)
Query: 132 IIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLL 191
+ ++ L+ Y VGA+ ++ V V++S + R + + P LD +
Sbjct: 74 ALSLYALLILIGYATAGVVGALSVLLAVPLTL-RVFVSWRYEVRVRRMIQQLPQLLDHTV 132
Query: 192 ICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCV 251
++SG ++ A V I PL + M + + A +F + D
Sbjct: 133 RSLKSGRTLADA---VLHGIDATDQPLKDGMSRIERNVQLGVSLPDAARDFAELYERDEF 189
Query: 252 RNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLI 311
L + RYG + + + L+ R + +A + ++T ++ LP+ +
Sbjct: 190 HLFAIGLRVNHRYGGNASELMENLIKLIRDREQAGRQLRAMTGETRMTAV-VLALLPISM 248
>gi|33593027|ref|NP_880671.1| hypothetical protein BP1999 [Bordetella pertussis Tohama I]
gi|33563402|emb|CAE42279.1| putative membrane protein [Bordetella pertussis Tohama I]
gi|332382439|gb|AEE67286.1| hypothetical protein BPTD_1969 [Bordetella pertussis CS]
Length = 306
Score = 61.4 bits (148), Expect = 2e-07, Method: Composition-based stats.
Identities = 41/267 (15%), Positives = 84/267 (31%), Gaps = 27/267 (10%)
Query: 53 EILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGF-RSEY 111
R + +L R + + + + + L AG +
Sbjct: 24 RQARDGARRQASEAFLERQLELRPGQPGASQASAARRRLPISNGAWRQLLLRAGVEPTPR 83
Query: 112 SLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNL 171
L + L VP + W+FG G + + A +
Sbjct: 84 FLAASVGAHLGVP------ALAWLFG-------------GWISAAAALLLVALLWYFHLW 124
Query: 172 VQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSF 231
++ + + P LD L+ + G S++ A + +G PL E + +++
Sbjct: 125 LKADRRRMVHQLPTFLDALVRLITIGNSVNAAFQ---NALGSVEQPLLEVLQRADSQVRS 181
Query: 232 LPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKA 291
+ A + Q+ + + + + R+G L + + R E A
Sbjct: 182 GKDLDAALHQVSRQYQLRELFLVSAVIALALRFGGRSDQVLERMAAFMRDLEQARDELTA 241
Query: 292 ASLGPKLTVPMIIFFLP---VLILVII 315
S +L+ I+ LP L ++I
Sbjct: 242 LSAEVRLSA-WILALLPIGLALFIIIF 267
>gi|167842100|ref|ZP_02468784.1| type II secretion system protein [Burkholderia thailandensis
MSMB43]
Length = 200
Score = 61.4 bits (148), Expect = 2e-07, Method: Composition-based stats.
Identities = 27/149 (18%), Positives = 54/149 (36%), Gaps = 7/149 (4%)
Query: 169 SNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAE 228
L+ + + +PDALDL++ V +GI + QA+ + P+
Sbjct: 13 RILIARFKQRFLGVFPDALDLIIRAVRAGIPVAQAIGTAGRESEE---PVRATFRAMGDA 69
Query: 229 LSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAE 288
L + + E R Q+ L+ G ++ ++L L R+ R + +
Sbjct: 70 LRVGADLKDVLEQQAERLQLADFSFFGVCLVLQRETGGNLTETLENLSGIIRTRRDIRMK 129
Query: 289 KKA----ASLGPKLTVPMIIFFLPVLILV 313
+A + K+ + L +V
Sbjct: 130 TRALTAEGRIASKIIAAVPFAIAAFLFVV 158
>gi|33596972|ref|NP_884615.1| hypothetical protein BPP2379 [Bordetella parapertussis 12822]
gi|33566423|emb|CAE37676.1| putative membrane protein [Bordetella parapertussis]
Length = 306
Score = 61.4 bits (148), Expect = 2e-07, Method: Composition-based stats.
Identities = 34/266 (12%), Positives = 76/266 (28%), Gaps = 25/266 (9%)
Query: 53 EILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYS 112
R + +L R + + + + + L AG
Sbjct: 24 RQARDGARRQASEAFLERQLELRPGQPEASQAPAARRRLPISNGAWRQLLLRAGV---EP 80
Query: 113 LNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLV 172
L + + L ++ + + +
Sbjct: 81 TPRFLAASVGAHVGVPALAWLFGGWISAAAALLLVALL---------------WYFHLWL 125
Query: 173 QKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFL 232
+ + + P LD L+ + G S++ A + +G PL E + +++
Sbjct: 126 KADRRRMVHQLPTFLDALVRLITIGNSVNAAFQ---NALGSVEQPLLEVLQRADSQVRSG 182
Query: 233 PNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAA 292
+ A + Q+ + + + + R+G L + + R E A
Sbjct: 183 KDLDAALHQVSRQYQLRELFLVSAVIALALRFGGRSDQVLERMAAFMRDLEQARDELTAL 242
Query: 293 SLGPKLTVPMIIFFLP---VLILVII 315
S +L+ I+ LP L ++I
Sbjct: 243 SAEVRLSA-WILALLPIGLALFIIIF 267
>gi|163857688|ref|YP_001631986.1| putative Flp pilus assembly protein [Bordetella petrii DSM 12804]
gi|163261416|emb|CAP43718.1| putative Flp pilus assembly protein [Bordetella petrii]
Length = 307
Score = 61.4 bits (148), Expect = 2e-07, Method: Composition-based stats.
Identities = 41/243 (16%), Positives = 78/243 (32%), Gaps = 9/243 (3%)
Query: 65 KDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVP 124
+ + + R S L + + A D+N + +G L +R
Sbjct: 23 RRAGQGQRRQATSVFLERQLTQGRQNASADDDNAPRTILQSGIEHWDVLLRCAGLRQTAG 82
Query: 125 IIFLI-LGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAW 183
+ I L + +L P V AV+L+ + F +I +R+ +
Sbjct: 83 LYGAISLILCTGVLLAAVLGGPVSAIVAAVMLLVAIYF-----YIWLRADRRRGRMFDQL 137
Query: 184 PDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFY 243
P+ LD ++ + G S+ S PL E + A N
Sbjct: 138 PEMLDTMVRLITIGNSMA---AAFQAASANTSEPLREVVEKAAHLSRSTQELDAALANVA 194
Query: 244 NRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMI 303
+ + +R + + +YG L + + R E AAS +L+ ++
Sbjct: 195 RQYGFEELRLLAAVVRVAQKYGGRSDVVLERIAAFMRDVAQARGELVAASAEIRLSAWVL 254
Query: 304 IFF 306
Sbjct: 255 ALM 257
>gi|117929187|ref|YP_873738.1| type II secretion system protein [Acidothermus cellulolyticus 11B]
gi|117649650|gb|ABK53752.1| type II secretion system protein [Acidothermus cellulolyticus 11B]
Length = 203
Score = 61.4 bits (148), Expect = 2e-07, Method: Composition-based stats.
Identities = 37/163 (22%), Positives = 68/163 (41%), Gaps = 5/163 (3%)
Query: 164 PSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEML 223
P + ++ + P A DLL C+E+G++ +AL V E +G S L+ +
Sbjct: 43 PRRQVLTRARRSPAVTGDLLPLACDLLAACLETGVTSRRALELVVEALGRDS--LNTPLP 100
Query: 224 LTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSER 283
+ L + A+ V +A Q++ G ++ +L L E R
Sbjct: 101 AVSSALRLGASAVQAWAEVPAELGWTEV---ARAFGQAENSGLALAGTLTRLADERRRTV 157
Query: 284 LMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
A + A G ++ +P+ + FLP +LV + P I ++
Sbjct: 158 RAWAAQATARAGVRMALPLGVCFLPAFLLVGVLPVIFGFAHSL 200
>gi|330969403|gb|EGH69469.1| type II secretion system protein [Pseudomonas syringae pv. aceris
str. M302273PT]
Length = 294
Score = 61.4 bits (148), Expect = 2e-07, Method: Composition-based stats.
Identities = 33/179 (18%), Positives = 69/179 (38%), Gaps = 5/179 (2%)
Query: 133 IWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLI 192
+ ++ L+ Y VGA+ ++ V V++S + R + + P LD +
Sbjct: 75 LSLYALLILIGYATAGVVGALSVLLAVPLTL-RVFVSWRYEVRVRRMIQQLPQLLDHTVR 133
Query: 193 CVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVR 252
++SG ++ A V I PL + M + + A +F + D
Sbjct: 134 SLKSGRTLADA---VLHGIDATDQPLKDGMSRIERNVQLGVSLPDAARDFAELYERDEFH 190
Query: 253 NATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLI 311
L + RYG + + + L+ R + +A + ++T ++ LP+ +
Sbjct: 191 LFAIGLRVNHRYGGNASELMENLIKLIRDREQAGRQLRAMTGETRMTAV-VLALLPISM 248
>gi|323493499|ref|ZP_08098621.1| Flp pilus assembly protein TadB [Vibrio brasiliensis LMG 20546]
gi|323312322|gb|EGA65464.1| Flp pilus assembly protein TadB [Vibrio brasiliensis LMG 20546]
Length = 302
Score = 61.4 bits (148), Expect = 2e-07, Method: Composition-based stats.
Identities = 34/178 (19%), Positives = 69/178 (38%), Gaps = 10/178 (5%)
Query: 121 LVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIK 180
L++ + ++F +++ + A ++IG V F +++ +
Sbjct: 74 LLLCCCAGLPVGGYLFLTMLDIQWRLAAGLLAALVIGLVLFVV-------RKRQQVEEFE 126
Query: 181 RAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFE 240
++ L L+ V +G+S+ QA+ +VAE Q L E +L+ +
Sbjct: 127 QSIVQVLGLISRAVSAGLSVPQAISQVAE---AQDGLLGREFSRIEDQLALGHGMKHTLN 183
Query: 241 NFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKL 298
R R T AL+ + G + D L L R M+ + K+ + P++
Sbjct: 184 EACVRLPYKAFRYFTIALVLNQNSGGQLRDILHSLSRTLHDNRTMQKKVKSLTAEPRM 241
>gi|172060498|ref|YP_001808150.1| type II secretion system protein [Burkholderia ambifaria MC40-6]
gi|171993015|gb|ACB63934.1| type II secretion system protein [Burkholderia ambifaria MC40-6]
Length = 330
Score = 61.4 bits (148), Expect = 2e-07, Method: Composition-based stats.
Identities = 33/177 (18%), Positives = 59/177 (33%), Gaps = 5/177 (2%)
Query: 150 VGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAE 209
A + G +W+++ +Q+R+ I R P LD ++ V G S+ A +
Sbjct: 127 ALACLAALVCGSAILGIWLTSRIQRRRLKIVRQIPSFLDGIVRLVTLGNSVPAAFQAA-- 184
Query: 210 DIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIG 269
+ PL + L A + + L S +YG
Sbjct: 185 -LLTTEEPLRGCLDHVSRMLRTGVEIDRAMLHIAKIYRTQEFELLGSVLRLSVKYGGRAD 243
Query: 270 DSLRVLVSETRSERLMEAEKKAASLGPKLT--VPMIIFFLPVLILVIIGPAILSIID 324
L + R E E A S +L+ V +++ +V+ P L +
Sbjct: 244 VMLERMAVFMRDLEQAERELTAMSAETRLSAFVLVMLPIGIGSFVVMTNPKYLEGMW 300
>gi|229142568|ref|ZP_04271049.1| hypothetical protein bcere0013_56240 [Bacillus cereus BDRD-ST26]
gi|228640862|gb|EEK97212.1| hypothetical protein bcere0013_56240 [Bacillus cereus BDRD-ST26]
Length = 240
Score = 61.4 bits (148), Expect = 2e-07, Method: Composition-based stats.
Identities = 50/235 (21%), Positives = 95/235 (40%), Gaps = 20/235 (8%)
Query: 96 ENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVIL 155
E I KL AG + L +++ PIIF + +I +D L +L
Sbjct: 20 ELIQKKLEEAGL--DTKPEEYLKMKVAYPIIFTSVFLICTVFHDYYL-------FKVGVL 70
Query: 156 IGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQS 215
I + + P + +++ + K P+ L +L +++ +++ + A+ G+
Sbjct: 71 ISPLLYFYPDYLLKRRIKQAIEARKFELPEYLIPMLQLLKTHTTLEA--VKKAQIYAGRH 128
Query: 216 VPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVL 275
L + AEL F NF V T AL Q+ + T SLR++
Sbjct: 129 --LRPYVSTLTAELEMYAGSDQPFRNFAAALNSPEVNTFTIALQQAQK--TDKVQSLRIM 184
Query: 276 VSETRSERLMEAEKKAASLGPKLTVPMII--FFLPVLILVIIGPAILSIIDTMKD 328
++ + R ++ E + K PM + F + V+ ++I P ++ I M+
Sbjct: 185 DAQIKMMRELKHENYNRLIQNK---PMEMNKFNVAVIGCIVIYPMVIVIQSLMQG 236
>gi|187479015|ref|YP_787039.1| type IV pilus assembly protein [Bordetella avium 197N]
gi|115423601|emb|CAJ50139.1| putative type IV pilus assembly protein [Bordetella avium 197N]
Length = 305
Score = 61.4 bits (148), Expect = 2e-07, Method: Composition-based stats.
Identities = 26/151 (17%), Positives = 58/151 (38%), Gaps = 7/151 (4%)
Query: 168 ISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIA 227
I +R+ + + PD +D ++ + G S++ A + + PL E + A
Sbjct: 120 IWRQAGERRQRMIKQLPDFIDGVVRLITIGNSVNAAFQGA---MTSIDDPLLEVLQRAEA 176
Query: 228 ELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEA 287
+ + A + + + + + + R+G L + + R L
Sbjct: 177 LMRSGKDLDSALLKVSRQYGLQELYLVSSVISLALRFGGRSDLVLERMAAFMRDLELARE 236
Query: 288 EKKAASLGPKLTVPMIIFFLPV---LILVII 315
E A S +++V I+ LP+ L +++
Sbjct: 237 ELIALSAEVRMSV-WILSLLPIGLGLFIIVF 266
>gi|313902412|ref|ZP_07835815.1| Type II secretion system F domain [Thermaerobacter subterraneus DSM
13965]
gi|313467343|gb|EFR62854.1| Type II secretion system F domain [Thermaerobacter subterraneus DSM
13965]
Length = 300
Score = 61.4 bits (148), Expect = 2e-07, Method: Composition-based stats.
Identities = 39/211 (18%), Positives = 78/211 (36%), Gaps = 9/211 (4%)
Query: 97 NIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILI 156
++V LR AG+ + L + + G L A L+
Sbjct: 71 DLVLLLRRAGWHRWAGDDPLAWACRALGAAAWSGALAG--GLVALGVLASGGFGPAAWLL 128
Query: 157 GYVGFCAPS----VWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIG 212
G+ A V ++ ++R + ++ P L+ + + G+S+ Q++ VA D+G
Sbjct: 129 PAAGYLAGRRCLLVLLAAAGRRRATRVRVGLPGWLEDIALAARGGLSLRQSIE-VANDVG 187
Query: 213 GQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSL 272
PL ++ A + + V A + L++++ G + +L
Sbjct: 188 --EGPLVDDARDAFARIRAGQPLRQPLLELAQLYPHPEVTVALRTLVEAEVRGLPLPQTL 245
Query: 273 RVLVSETRSERLMEAEKKAASLGPKLTVPMI 303
V R+ +++A SL LTV +
Sbjct: 246 DEHVRLMRALLARRWQRQADSLPFWLTVITM 276
>gi|33867075|ref|NP_898633.1| hypothetical protein PBD2.018 [Rhodococcus erythropolis]
gi|33668909|gb|AAP73903.1| conserved hypothetical protein [Rhodococcus erythropolis]
Length = 300
Score = 61.0 bits (147), Expect = 2e-07, Method: Composition-based stats.
Identities = 33/214 (15%), Positives = 76/214 (35%), Gaps = 8/214 (3%)
Query: 113 LNILLVVRLVVPIIFLILGIIWIFGYDKLLE-YPFQLRVGAVILIGYVGFCAPSVWISNL 171
+ L +++ ++ L+ L P+ + I + V F P + +
Sbjct: 89 IPYFLGDKVLSALVGLLFFPALNLMLTALGHGLPWGIPTILSIAVAGVLFITPDIDVRKK 148
Query: 172 VQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGG-QSVPLSEEMLLTIAELS 230
+ R+ ++ + + G+ Q+L R A L EE++
Sbjct: 149 AAAAREEFSRSLGAYIEFVALNRTGGVGAVQSLERAAAVGDSWVFRRLDEELMRAQ---R 205
Query: 231 FLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKK 290
++ + + + + G S+ +L S R+ +L + K
Sbjct: 206 SGQAPWDTLTRISGELELPDLADLADIMTLTGEQGASVAVTLSARASALRNAQLSDELGK 265
Query: 291 AASLGPKLTVPM-IIFFLPVLILVIIGPAILSII 323
A S K+ P+ ++ + + +L I PA+ +I+
Sbjct: 266 AGSATEKIQAPLAVLGIIFMAMLFI--PALSNIV 297
>gi|325518468|gb|EGC98167.1| type II secretion system protein [Burkholderia sp. TJI49]
Length = 257
Score = 61.0 bits (147), Expect = 2e-07, Method: Composition-based stats.
Identities = 35/178 (19%), Positives = 60/178 (33%), Gaps = 5/178 (2%)
Query: 150 VGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAE 209
V A G VW+++ +Q+R+ I R P LD ++ V G S+ A +
Sbjct: 54 VLACFAAIACGSAVFGVWLASRIQRRRLKIVRQIPSFLDGIVRLVTLGNSVPAAFQAA-- 111
Query: 210 DIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIG 269
+ PL + L A + + + L S +YG
Sbjct: 112 -LLTTEEPLRGCLDHVSRMLRTGVEIDRAMLHIAKIYRTEEFELLGSVLRLSVKYGGRAD 170
Query: 270 DSLRVLVSETRSERLMEAEKKAASLGPKLT--VPMIIFFLPVLILVIIGPAILSIIDT 325
L + R E E A S +L+ V +++ +V+ P L +
Sbjct: 171 VMLERMAIFMRDLEQAERELTAMSAETRLSAFVLVMLPIAIGSFVVMTNPTYLQGMWN 228
>gi|288919649|ref|ZP_06413977.1| type II secretion system protein [Frankia sp. EUN1f]
gi|288348938|gb|EFC83187.1| type II secretion system protein [Frankia sp. EUN1f]
Length = 286
Score = 61.0 bits (147), Expect = 2e-07, Method: Composition-based stats.
Identities = 45/254 (17%), Positives = 76/254 (29%), Gaps = 40/254 (15%)
Query: 95 DENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVI 154
N+ L AG R +L + L+ F
Sbjct: 34 SRNLRETLVQAGIRGVSPQQ-------------FVLISAALGLVVGLVVLAFSGTFSLAG 80
Query: 155 LIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQ 214
G P + + R ++ WPD +D L V +G+S+ +AL V
Sbjct: 81 AFGVFASLLPRQLVLRRRRGRMHDLREVWPDVVDNLASAVRAGLSLPEALAAVG---VRG 137
Query: 215 SVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRY-GTSIGDSLR 273
V L + + + + ++L + GT +G LR
Sbjct: 138 PVALRPAFTRFGEDYRATGSFSTCLDRLADELADPVADRIIESLRMAREVGGTDLGRLLR 197
Query: 274 VLVSETRSERLMEAE--------KKAASLGPKLTVPMIIFFL-------------PVLIL 312
L + R + AE AA L + P I+ L P +
Sbjct: 198 TLSTFLREDARTRAELETRQTWTVNAARLA--MAAPWIVLLLLASRGENVRAYDSPTGVA 255
Query: 313 VIIGPAILSIIDTM 326
V+ G A +S++ +
Sbjct: 256 VLAGGAGVSVLAYL 269
>gi|257483344|ref|ZP_05637385.1| type II secretion system protein F domain [Pseudomonas syringae pv.
tabaci ATCC 11528]
gi|298488956|ref|ZP_07006979.1| Flp pilus assembly protein TadB [Pseudomonas savastanoi pv.
savastanoi NCPPB 3335]
gi|298156454|gb|EFH97551.1| Flp pilus assembly protein TadB [Pseudomonas savastanoi pv.
savastanoi NCPPB 3335]
gi|320322733|gb|EFW78826.1| type II secretion system protein F domain [Pseudomonas syringae pv.
glycinea str. B076]
gi|320330482|gb|EFW86461.1| type II secretion system protein F domain [Pseudomonas syringae pv.
glycinea str. race 4]
gi|330887978|gb|EGH20639.1| type II secretion system, protein F domain [Pseudomonas syringae
pv. mori str. 301020]
gi|330989173|gb|EGH87276.1| type II secretion system protein F domain [Pseudomonas syringae pv.
lachrymans str. M301315]
gi|331012563|gb|EGH92619.1| type II secretion system protein, F domain [Pseudomonas syringae
pv. tabaci ATCC 11528]
Length = 294
Score = 61.0 bits (147), Expect = 2e-07, Method: Composition-based stats.
Identities = 27/145 (18%), Positives = 56/145 (38%), Gaps = 4/145 (2%)
Query: 165 SVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLL 224
+++S + R + + P LD + ++SG ++ A V I PL + M
Sbjct: 106 RLFVSWRYEVRVRRMIQQLPQLLDHTVRSLKSGRTLADA---VLHGIEATDQPLKDGMSR 162
Query: 225 TIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERL 284
+ + A +F + D L + RYG + + + L+ R
Sbjct: 163 IERNVQLGVSLPDAARDFAELYERDEFHLFALGLRVNHRYGGNASELMENLIKLIRDREQ 222
Query: 285 MEAEKKAASLGPKLTVPMIIFFLPV 309
+ +A + ++T +++ LPV
Sbjct: 223 AGRQLRAMTGETRMTA-LVLALLPV 246
>gi|71733377|ref|YP_276553.1| type II secretion system protein F domain [Pseudomonas syringae pv.
phaseolicola 1448A]
gi|71553930|gb|AAZ33141.1| type II secretion system protein F domain protein [Pseudomonas
syringae pv. phaseolicola 1448A]
Length = 294
Score = 61.0 bits (147), Expect = 2e-07, Method: Composition-based stats.
Identities = 27/145 (18%), Positives = 57/145 (39%), Gaps = 4/145 (2%)
Query: 165 SVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLL 224
+++S + R + + P LD + ++SG ++ A V + I PL + M
Sbjct: 106 RLFVSWRYEVRVRRMIQQLPQLLDHTVRSLKSGRTLADA---VLQGIEATDQPLKDGMSR 162
Query: 225 TIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERL 284
+ + A +F + D L + RYG + + + L+ R
Sbjct: 163 IERNVQLGVSLPDAARDFAELYERDEFHLFALGLRVNHRYGGNASELMENLIKLIRDREQ 222
Query: 285 MEAEKKAASLGPKLTVPMIIFFLPV 309
+ +A + ++T +++ LPV
Sbjct: 223 AGRQLRAMTGETRMTA-LVLALLPV 246
>gi|271962853|ref|YP_003337049.1| hypothetical protein Sros_1308 [Streptosporangium roseum DSM 43021]
gi|270506028|gb|ACZ84306.1| hypothetical protein Sros_1308 [Streptosporangium roseum DSM 43021]
Length = 311
Score = 61.0 bits (147), Expect = 2e-07, Method: Composition-based stats.
Identities = 46/320 (14%), Positives = 101/320 (31%), Gaps = 19/320 (5%)
Query: 13 ELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRL 72
L V + +F LI A+ L R+ ++ RE ++ + D S
Sbjct: 4 PLLVGSVLGLGLFLLIRALFP---ARPGLVTRLLALDAAREGTTVPRMQLVLPDEEVSAF 60
Query: 73 RTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILG- 131
R L F +A ++ + S L ++++ + L+
Sbjct: 61 RRNLGVRLARFYAARGWEARSAKADLALLGK--------SFEGFLATKMLLAVSGLLAFP 112
Query: 132 IIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLL 191
++ + + + + V F P + I + + + LDL+
Sbjct: 113 LLLGWLVVMGWGVSPTIPLWVALAAAGVFFILPDLQIKRDAARMRRDFRHVVGAFLDLVA 172
Query: 192 ICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQ------VAFENFYNR 245
+ + G + +AL + + + R A +
Sbjct: 173 MNLAGGRGVPEALMMAVSVGSPGADDEGANWAMNRIREALGNARIVGITPWQALGQLGDE 232
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
+D +R+ + AL G + SL + R L E E +A + V ++
Sbjct: 233 INVDELRDLSAALGLVADDGAKVRASLTARAATLRRRELAEVEGQAGERSQSMLVAQLLL 292
Query: 306 FLPVLILVIIGPAILSIIDT 325
++ + PA + ++ +
Sbjct: 293 CA-GFVIFLSFPAAMKMLGS 311
>gi|167581956|ref|ZP_02374830.1| pilus assembly protein, putative [Burkholderia thailandensis TXDOH]
Length = 219
Score = 61.0 bits (147), Expect = 2e-07, Method: Composition-based stats.
Identities = 27/149 (18%), Positives = 53/149 (35%), Gaps = 7/149 (4%)
Query: 169 SNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAE 228
L+ + + +PDALDL++ V +GI + QA+ + P+
Sbjct: 32 RMLIARFKQRFLSVFPDALDLIIRAVRAGIPVAQAIGTAGRESEE---PVRATFRAMGDA 88
Query: 229 LSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAE 288
L + + E R Q+ L G ++ ++L L R+ R + +
Sbjct: 89 LRVGADMKDVLEQQAARLQLADFSFFGVCLTLQRETGGNLTETLENLSGIIRARRDIRMK 148
Query: 289 KKA----ASLGPKLTVPMIIFFLPVLILV 313
+A + K+ + L +V
Sbjct: 149 TRALTAEGRIASKIIAAVPFAIAAFLFVV 177
>gi|325964625|ref|YP_004242531.1| type II secretion system protein F [Arthrobacter phenanthrenivorans
Sphe3]
gi|323470712|gb|ADX74397.1| type II secretion system protein F [Arthrobacter phenanthrenivorans
Sphe3]
Length = 204
Score = 61.0 bits (147), Expect = 2e-07, Method: Composition-based stats.
Identities = 36/140 (25%), Positives = 65/140 (46%), Gaps = 5/140 (3%)
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
L+L+ +++G SI +AL V+ + + ++ L+ + + A+ + R
Sbjct: 69 MLELVAAMLDAGSSIGRALELVSGSASDRY---CRALRPVVSALAIGADWETAWRSSAVR 125
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
+ V AL + G L + R ER AEK+AASLG KL VP+ +
Sbjct: 126 --LPEVLELRDALGFAALTGAPSSAILYAQAARLRRERFRAAEKRAASLGVKLVVPLGLC 183
Query: 306 FLPVLILVIIGPAILSIIDT 325
LP I + + P +L+++ +
Sbjct: 184 SLPAFICLGVVPVLLALVPS 203
>gi|167044731|gb|ABZ09401.1| putative bacterial type II secretion system protein F domain
protein [uncultured marine microorganism
HF4000_APKG7N23]
Length = 191
Score = 61.0 bits (147), Expect = 2e-07, Method: Composition-based stats.
Identities = 32/144 (22%), Positives = 58/144 (40%), Gaps = 3/144 (2%)
Query: 173 QKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFL 232
+ R +S+ + A+ + + +ESG+ + +A++ +A++ LS A+
Sbjct: 2 KSRLASVDQELLYAIRAIEVLLESGVGVAEAMKHIADE---DYGDLSVIFRQIFADTDSG 58
Query: 233 PNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAA 292
N A T +R +LI S T++ D LR + ER ME +
Sbjct: 59 RNFSDAMRTQMRSTDSAGLRKVLSSLIMSMEEDTNVIDRLRSIAEREAKERRMELDGFIE 118
Query: 293 SLGPKLTVPMIIFFLPVLILVIIG 316
L + + L LI+VI
Sbjct: 119 GLAGTAEFFIALSILLPLIVVIAA 142
>gi|158317569|ref|YP_001510077.1| type II secretion system protein [Frankia sp. EAN1pec]
gi|158112974|gb|ABW15171.1| type II secretion system protein [Frankia sp. EAN1pec]
Length = 286
Score = 61.0 bits (147), Expect = 2e-07, Method: Composition-based stats.
Identities = 33/194 (17%), Positives = 61/194 (31%), Gaps = 17/194 (8%)
Query: 96 ENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVIL 155
N+ L AG R + L+ + L+ G++ + +V
Sbjct: 35 RNLRETLAQAGIRGVTA----HQFVLISAALGLVAGLVILVFSGTFSLAVAFAAFASV-- 88
Query: 156 IGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQS 215
P + + R ++ WPD +D L V +G+S+ + L V
Sbjct: 89 -------LPRQLVLRRRRARIHDLRELWPDVVDNLASAVRAGMSLPEGLAAVG---VRGP 138
Query: 216 VPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRY-GTSIGDSLRV 274
PL + + + + ++L + GT +G LR
Sbjct: 139 APLRPAFTRFGEDYRATGSFSTCLDRLADDLADPVADRIIESLRMAREVGGTDLGRLLRT 198
Query: 275 LVSETRSERLMEAE 288
L + R + AE
Sbjct: 199 LSAFLREDARTRAE 212
>gi|220927957|ref|YP_002504866.1| Flp pilus assembly protein TadB-like protein [Clostridium
cellulolyticum H10]
gi|219998285|gb|ACL74886.1| Flp pilus assembly protein TadB-like protein [Clostridium
cellulolyticum H10]
Length = 247
Score = 61.0 bits (147), Expect = 3e-07, Method: Composition-based stats.
Identities = 34/212 (16%), Positives = 90/212 (42%), Gaps = 15/212 (7%)
Query: 108 RSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVW 167
+EY++ + + + ++ + ++F + I I +G +
Sbjct: 4 YNEYAIPTKMKLVYALSAATVVFAVSYLFYRSFTVS----------IAISPLGIFYLNYR 53
Query: 168 ISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVP----LSEEML 223
+++KR++ + + D L L + +G +++A D+ + E
Sbjct: 54 RKQIIEKRKNELNLQFKDLLISLSSSLSAGKPLEKAFVGALSDLYVLYPSDDAYIVRETK 113
Query: 224 LTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSER 283
+ I +LS + + A +F R+ +D ++N + +I R G ++ D+++ S SE+
Sbjct: 114 IIINKLSLNVSIEEAVSDFAERSDIDDIKNFSDVIIICKRTGGNLVDAIKN-SSRIISEK 172
Query: 284 LMEAEKKAASLGPKLTVPMIIFFLPVLILVII 315
+ A++ L + ++ +P+ ++ I+
Sbjct: 173 IEMAQEIETLLSSRKLEQKVLNIMPIAMIFIL 204
>gi|220913900|ref|YP_002489209.1| type II secretion system protein [Arthrobacter chlorophenolicus A6]
gi|219860778|gb|ACL41120.1| type II secretion system protein [Arthrobacter chlorophenolicus A6]
Length = 200
Score = 61.0 bits (147), Expect = 3e-07, Method: Composition-based stats.
Identities = 36/140 (25%), Positives = 66/140 (47%), Gaps = 5/140 (3%)
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
L+L+ +++G SI +AL V+ + SE + ++ L+ + + A+ + R
Sbjct: 64 MLELVAAMLDAGSSIGRALELVSMSASARY---SESLRPVVSALAIGADWETAWRSSAVR 120
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
+ AL + G L + R ER AEK+AASLG KL +P+ +
Sbjct: 121 --QPGILELRDALGFAALTGAPSSAILYAQAARLRRERFRAAEKRAASLGVKLVIPLGLC 178
Query: 306 FLPVLILVIIGPAILSIIDT 325
LP I + + P +L+++ +
Sbjct: 179 SLPAFICLGVVPVLLALVPS 198
>gi|289625309|ref|ZP_06458263.1| type II secretion system protein F domain [Pseudomonas syringae pv.
aesculi str. NCPPB3681]
gi|289647834|ref|ZP_06479177.1| type II secretion system protein F domain [Pseudomonas syringae pv.
aesculi str. 2250]
gi|330867143|gb|EGH01852.1| type II secretion system, protein F domain [Pseudomonas syringae
pv. aesculi str. 0893_23]
gi|330871031|gb|EGH05740.1| type II secretion system, protein F domain [Pseudomonas syringae
pv. aesculi str. 0893_23]
Length = 294
Score = 61.0 bits (147), Expect = 3e-07, Method: Composition-based stats.
Identities = 27/145 (18%), Positives = 56/145 (38%), Gaps = 4/145 (2%)
Query: 165 SVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLL 224
+++S + R + + P LD + ++SG ++ A V I PL + M
Sbjct: 106 RLFVSWRYEVRVRRMIQQLPQLLDHTVRSLKSGRTLADA---VLHGIEATDQPLKDGMSR 162
Query: 225 TIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERL 284
+ + A +F + D L + RYG + + + L+ R
Sbjct: 163 IERNVQLGVSLPDAARDFAELYERDEFHLFALGLRVNHRYGGNASELMENLIKLIRDREQ 222
Query: 285 MEAEKKAASLGPKLTVPMIIFFLPV 309
+ +A + ++T +++ LPV
Sbjct: 223 AGRQLRAMTGETRMTA-LVLALLPV 246
>gi|226349292|ref|YP_002776406.1| hypothetical membrane protein [Rhodococcus opacus B4]
gi|226245207|dbj|BAH55554.1| hypothetical membrane protein [Rhodococcus opacus B4]
Length = 299
Score = 61.0 bits (147), Expect = 3e-07, Method: Composition-based stats.
Identities = 37/211 (17%), Positives = 73/211 (34%), Gaps = 19/211 (9%)
Query: 117 LVVRLVVPIIFLILGIIWIFGYDKL-LEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKR 175
L +LV ++ L++ + + + I ++ F P + I
Sbjct: 94 LGEKLVAALLGLLIFPFLNLVLTAFGVGLGWSIPAILSIATAFLLFLIPDIEIRRRATAA 153
Query: 176 QSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAEL----SF 231
++ +A +DL+ +C GI Q+L R A+ S L EL
Sbjct: 154 RAEFAQALSSYIDLVALCRRGGIGTTQSLERAAQVGD------SWVFLRLDEELYEAGRS 207
Query: 232 LPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKA 291
A + + + + + + G S+ SLR + RS + + A
Sbjct: 208 GEAPWNALTRVSHELGLTELGDLADIMNMTGDKGASVYASLRAKAAGLRSAQASAEQGAA 267
Query: 292 ASLGPKLTVPM--------IIFFLPVLILVI 314
A KL +P+ ++ +P L ++
Sbjct: 268 AEATEKLAMPLAGLAGLFIMLLLIPALTIIT 298
>gi|167620120|ref|ZP_02388751.1| pilus assembly protein, putative [Burkholderia thailandensis Bt4]
Length = 217
Score = 61.0 bits (147), Expect = 3e-07, Method: Composition-based stats.
Identities = 27/149 (18%), Positives = 53/149 (35%), Gaps = 7/149 (4%)
Query: 169 SNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAE 228
L+ + + +PDALDL++ V +GI + QA+ + P+
Sbjct: 30 RMLIARFKQRFLSVFPDALDLIIRAVRAGIPVAQAIGTAGRESEE---PVRATFRAMGDA 86
Query: 229 LSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAE 288
L + + E R Q+ L G ++ ++L L R+ R + +
Sbjct: 87 LRVGADMKDVLEQQAARLQLADFSFFGVCLTLQRETGGNLTETLENLSGIIRARRDIRMK 146
Query: 289 KKA----ASLGPKLTVPMIIFFLPVLILV 313
+A + K+ + L +V
Sbjct: 147 TRALTAEGRIASKIIAAVPFAIAAFLFVV 175
>gi|261251594|ref|ZP_05944168.1| flp pilus assembly protein TadB [Vibrio orientalis CIP 102891]
gi|260938467|gb|EEX94455.1| flp pilus assembly protein TadB [Vibrio orientalis CIP 102891]
Length = 302
Score = 60.7 bits (146), Expect = 3e-07, Method: Composition-based stats.
Identities = 30/156 (19%), Positives = 61/156 (39%), Gaps = 14/156 (8%)
Query: 171 LVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELS 230
+++ +++ L L+ V +G+S+ QA+ +VAE GG L E +L+
Sbjct: 117 RKKQQIEEFEQSIVQVLGLISRAVSAGLSVPQAISQVAESQGGL---LGREFSRIEDQLA 173
Query: 231 FLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKK 290
+ R R T AL+ + G + + L L R M+ + K
Sbjct: 174 LGHGMRYTLNEACIRLPYKAFRYFTIALVLNQSNGGQLREILHSLSRTLHDNRTMQKKVK 233
Query: 291 AASLGPKLTV-----------PMIIFFLPVLILVII 315
+ + P++ ++ + P L +++I
Sbjct: 234 SLTSEPRMAARFLSLLPLGLLAVVAWINPSLFVLLI 269
>gi|225570081|ref|ZP_03779106.1| hypothetical protein CLOHYLEM_06177 [Clostridium hylemonae DSM
15053]
gi|225161551|gb|EEG74170.1| hypothetical protein CLOHYLEM_06177 [Clostridium hylemonae DSM
15053]
Length = 251
Score = 60.7 bits (146), Expect = 3e-07, Method: Composition-based stats.
Identities = 26/154 (16%), Positives = 63/154 (40%), Gaps = 3/154 (1%)
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
+ GI+ L + + AV L+ V +W ++++ SS + + DA+
Sbjct: 20 VQGILKSTVITVLTAWLYYRSAIAVPLLAPVWIWQYRIWKKECLRRKSSSFQLQFKDAIQ 79
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVP---LSEEMLLTIAELSFLPNRQVAFENFYNR 245
L + +G S++ A + +++ + +E+ + ++++ + E F R
Sbjct: 80 SLSSALSTGYSVENAWKEAEKELKLLYRENDRIRKELHIIVSQIRVNVPMEQIMEEFAER 139
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSET 279
+ + VRN T + + G + +R +
Sbjct: 140 VRQEDVRNFTAVFAAAKKSGGDMVAIIRNTAGQI 173
>gi|56460010|ref|YP_155291.1| Flp pilus assembly protein TadB [Idiomarina loihiensis L2TR]
gi|56179020|gb|AAV81742.1| Flp pilus assembly protein TadB [Idiomarina loihiensis L2TR]
Length = 233
Score = 60.7 bits (146), Expect = 3e-07, Method: Composition-based stats.
Identities = 31/193 (16%), Positives = 76/193 (39%), Gaps = 5/193 (2%)
Query: 123 VPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRA 182
+P+ L+ + + L+ + F + + + AP +L ++R I++
Sbjct: 1 MPVTILVRSYLVVTLLSPLIVW-FYVNRTWAVATFILTLLAPPFVYRHLKKQRYIKIEKQ 59
Query: 183 WPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENF 242
P L L + SG S+ AL+ + G PL +E+ + + E++
Sbjct: 60 LPGMLIGLSNQLRSGTSVGAALKNL---KGTLLAPLGQEVDELLRQEKVGKPLTDCLEDW 116
Query: 243 YNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPM 302
R + ++ Q+L+ + G D L + ++ ++ + + ++
Sbjct: 117 QRRVPVFSIKLVVQSLVLGLKSGGQQSDLFLRLADNLQQQQHIKERQITLTSQARMQAK- 175
Query: 303 IIFFLPVLILVII 315
I+ +PV + ++
Sbjct: 176 ILVMMPVGLYFLL 188
>gi|119960955|ref|YP_948379.1| type II secretion system protein F [Arthrobacter aurescens TC1]
gi|119947814|gb|ABM06725.1| putative bacterial type II secretion system protein F domain
[Arthrobacter aurescens TC1]
Length = 284
Score = 60.7 bits (146), Expect = 3e-07, Method: Composition-based stats.
Identities = 32/166 (19%), Positives = 63/166 (37%), Gaps = 4/166 (2%)
Query: 127 FLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDA 186
L+ + + L+ Y + G P + +KR++S+++ WPD
Sbjct: 52 GLLATCAGLGLFALLVFYVLTGSPPVALCFAIFGSWIPFAIVRWRARKRRNSLRQLWPDI 111
Query: 187 LDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRT 246
+D L + +G+++ +AL ++ + + L L A+ N + A + R
Sbjct: 112 VDHLRSAIRAGLALPEALIQLGHNGPEELREL---FLDFGADYRAAGNFEAAADKLKERL 168
Query: 247 QMDCVRNATQALIQSDRYGTS-IGDSLRVLVSETRSERLMEAEKKA 291
+AL + G S +G L L R +E +A
Sbjct: 169 ADPVADRIIEALRMTREVGGSDLGRMLGTLSGFLRDSARTRSELEA 214
>gi|255327036|ref|ZP_05368112.1| type II secretion system protein [Rothia mucilaginosa ATCC 25296]
gi|255296253|gb|EET75594.1| type II secretion system protein [Rothia mucilaginosa ATCC 25296]
Length = 284
Score = 60.7 bits (146), Expect = 3e-07, Method: Composition-based stats.
Identities = 39/214 (18%), Positives = 69/214 (32%), Gaps = 17/214 (7%)
Query: 79 SLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGY 138
L F D +V LR AG S + + V + +
Sbjct: 17 YLSCFPDNGKPPKPSNDPALVVALRKAGMHS-LTPRTFMWVSVASGV------------S 63
Query: 139 DKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGI 198
+L + +L GF AP V +++ + + I + WPDA+D L + +G+
Sbjct: 64 TSVLLLMLTQLLPLGLLGLIGGFAAPRVIVNHRARAADARIWQLWPDAVDHLRSAIRAGL 123
Query: 199 SIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQAL 258
S+ +AL +++ L + + + +AL
Sbjct: 124 SLPEALIQLS---YRGPEELRDAFAHFSRDYRASGEFVPSLNRLKEYLSDPVADTIIEAL 180
Query: 259 IQSDRYGTS-IGDSLRVLVSETRSERLMEAEKKA 291
+ G S +G L L R +E A
Sbjct: 181 KIAREVGGSDLGKLLGTLSDFLRENARTRSELLA 214
>gi|163856390|ref|YP_001630688.1| hypothetical protein Bpet2079 [Bordetella petrii DSM 12804]
gi|163260118|emb|CAP42419.1| putative membrane protein [Bordetella petrii]
Length = 281
Score = 60.7 bits (146), Expect = 3e-07, Method: Composition-based stats.
Identities = 31/171 (18%), Positives = 64/171 (37%), Gaps = 3/171 (1%)
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
L LG + + G L + L + P ++ L +R + ++ P AL
Sbjct: 55 LWLGAMLLAGVAGLAAFAASGSAMLGGLAAVLAARLPRHVVARLRGRRLARFEQQLPGAL 114
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQ 247
L + +G+ + ALR + + PL++E L + E + A R
Sbjct: 115 LALASALRAGVGVSTALRHIVDH---SEPPLAQEFGLMLREQRLGVSFDAALARLSQRVP 171
Query: 248 MDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKL 298
+ AL + G ++ ++L + R ++ + +A + +L
Sbjct: 172 SEASALVAAALRVATHTGGNLAETLDGIARTLRERLQLQGKVRALTAQGRL 222
>gi|330816718|ref|YP_004360423.1| Flp pilus assembly protein TadB [Burkholderia gladioli BSR3]
gi|327369111|gb|AEA60467.1| Flp pilus assembly protein TadB [Burkholderia gladioli BSR3]
Length = 329
Score = 60.7 bits (146), Expect = 3e-07, Method: Composition-based stats.
Identities = 34/188 (18%), Positives = 68/188 (36%), Gaps = 8/188 (4%)
Query: 124 PIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAW 183
P++ +++G + + + + A+I G +W+ + R+ I R
Sbjct: 104 PVLLMLIGAVVLVVLFAGIRGGWVAAFAALIG----GATLVGLWVLRRISARRLKIVRQL 159
Query: 184 PDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFY 243
P LD ++ V G S+ A + +G +PL + L A +
Sbjct: 160 PSFLDGVVRLVTLGNSVPAAFQGA---LGTTEMPLRLCLDQVSRMLRTGVEIDRAMLHIA 216
Query: 244 NRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMI 303
++ L S +YG L + + R E E +A S +L+ +
Sbjct: 217 KEYRIREFELVGSVLRLSVKYGGRADVMLERMSTFMRDLEQAERELRAMSAETRLSA-WV 275
Query: 304 IFFLPVLI 311
+ LP+ +
Sbjct: 276 LGLLPIAV 283
>gi|154505644|ref|ZP_02042382.1| hypothetical protein RUMGNA_03183 [Ruminococcus gnavus ATCC 29149]
gi|153794083|gb|EDN76503.1| hypothetical protein RUMGNA_03183 [Ruminococcus gnavus ATCC 29149]
Length = 232
Score = 60.7 bits (146), Expect = 3e-07, Method: Composition-based stats.
Identities = 29/197 (14%), Positives = 71/197 (36%), Gaps = 4/197 (2%)
Query: 136 FGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVE 195
+ Y F A IL+ + W ++++ + + +++ L ++
Sbjct: 8 ILITGMTAYLFYDHWTAWILMVPIALLYVKNWEEECCKQKKEEFREQFRESIQTLSAILK 67
Query: 196 SGISIDQALRRVAEDIGGQSVP---LSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVR 252
G S++ A+R ++I + +E + +L + + F +R + + V
Sbjct: 68 VGYSVENAIRETWKEICPIYKKKTRIIKEYETMVHQLDLNMTAEEVMKQFADRVKEEDVE 127
Query: 253 NATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLIL 312
N + R G +R + +E E + KL I+ +P +I+
Sbjct: 128 NFVTVFGAAKRLGGDSIAIIRHAADAIGEKMEVEREIQVMLTSKKLEFK-IMCVIPFVII 186
Query: 313 VIIGPAILSIIDTMKDH 329
+ + A + + +
Sbjct: 187 LYMRSAFPEFMAVLYGN 203
>gi|296109005|ref|YP_003615954.1| Type II secretion system F domain protein [Methanocaldococcus
infernus ME]
gi|295433819|gb|ADG12990.1| Type II secretion system F domain protein [Methanocaldococcus
infernus ME]
Length = 299
Score = 60.7 bits (146), Expect = 3e-07, Method: Composition-based stats.
Identities = 35/195 (17%), Positives = 80/195 (41%), Gaps = 13/195 (6%)
Query: 125 IIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWP 184
+ L +I +LL F+ + +L PS+ + ++K ++ P
Sbjct: 32 FLMLAFSVIIPIILSRLLNLSFKSTIIMTLLYFGAALSLPSILYESKMEK----LEENLP 87
Query: 185 DALDLLLICVESGISIDQALRRVAE-DIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFY 243
AL ++++ ++SG SI++AL V +I S + + L + + + A
Sbjct: 88 KALYIIVLALDSGRSINEALHEVVRANIKEVSPVFARVLYLIEKQK---LSFEDAMTIVS 144
Query: 244 NRTQMDCVRNATQALIQSDRYGTSIGDSLRVLV---SETRSERLMEAEKKAASLGPKLTV 300
+R + +I++ ++G ++ ++L+ L + R + A SL +
Sbjct: 145 TFYDSKILRMLGKIMIENRKFGGNLSETLKTLAKTLEDFRLYKRQLMSVTANSLA--MGF 202
Query: 301 PMIIFFLPVLILVII 315
MI +P + ++
Sbjct: 203 IMICLVVPGVAALLA 217
>gi|317122037|ref|YP_004102040.1| type II secretion system F domain [Thermaerobacter marianensis DSM
12885]
gi|315592017|gb|ADU51313.1| Type II secretion system F domain [Thermaerobacter marianensis DSM
12885]
Length = 300
Score = 60.3 bits (145), Expect = 4e-07, Method: Composition-based stats.
Identities = 41/247 (16%), Positives = 86/247 (34%), Gaps = 12/247 (4%)
Query: 63 LQKDSASSRLRTRDSKSLRNFVKKLN-LKAILVDENIVNKLRAAGFRS-EYSLNILLVVR 120
L+ + L L ++ + D +++ LR AG+ + V R
Sbjct: 36 LRAGADGQGLVRLPRPPLVEWIDRWPWPARPPADMDLILLLRRAGWHRVAGDDGLRWVCR 95
Query: 121 LVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYV----GFCAPSVWISNLVQKRQ 176
+ + + + + GY+ GF A + ++R
Sbjct: 96 ALGLASWGGAAAGGCLALAAGIAGGWSPAWWLLPAAGYLAGRRGFLA---GLEAAGRRRA 152
Query: 177 SSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQ 236
+ ++ P L+ + + G+++ QA+ VA D+G PL ++ A + +
Sbjct: 153 ARVRDGLPGWLEDIALAARGGLNLRQAVE-VANDVG--EGPLIDDAREAFARVRAGQPLR 209
Query: 237 VAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGP 296
V A + L++++ G + +L V R+ ++ A SL
Sbjct: 210 QPLLELARLYPDPEVTVALRTLVEAETRGLPLAQTLEEQVRLMRALAARRLQRHADSLPF 269
Query: 297 KLTVPMI 303
LTV +
Sbjct: 270 WLTVITM 276
>gi|307352779|ref|YP_003893830.1| type II secretion system F domain-containing protein [Methanoplanus
petrolearius DSM 11571]
gi|307156012|gb|ADN35392.1| Type II secretion system F domain protein [Methanoplanus
petrolearius DSM 11571]
Length = 603
Score = 60.3 bits (145), Expect = 4e-07, Method: Composition-based stats.
Identities = 46/270 (17%), Positives = 97/270 (35%), Gaps = 30/270 (11%)
Query: 7 DLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKD 66
D E + I + ++I+ + I + LE V R+ + + + D
Sbjct: 249 STIDLLEPLMYIGLPIGASAMIFLLYI-MMPPDNLE-------VSRKEITQSEYADTNID 300
Query: 67 SASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPII 126
S S +L F+K+L K + V K + S+Y +++ + +
Sbjct: 301 SESIQLVDN------KFLKRLQSKKQAIKIKTVLKNPLRYYVSDYQYSMVFGMAAAGAVT 354
Query: 127 FLIL-GIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPD 185
L + G + F LE + + A + + A S ++ + P
Sbjct: 355 LLYMNGYLLEFFPKYTLESFICIVICAFMFPIAFAYEARSWYL--------KKFESQLPG 406
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
L + + G+++ A+ +A+ + L+ E+ + E+ + A R
Sbjct: 407 FLREISDMKDMGMTLQSAIHIIAQ---SKIGVLTSEVKIASEEIKMGTSVSSALYKLEER 463
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVL 275
+ V+ A +I++ I D LR +
Sbjct: 464 IGLVSVKRAISLVIKASE----ITDHLREI 489
Score = 52.2 bits (124), Expect = 1e-04, Method: Composition-based stats.
Identities = 27/179 (15%), Positives = 67/179 (37%), Gaps = 4/179 (2%)
Query: 139 DKLLEYPFQLRVGAVILIGYVGFCA-PSVWISNLVQKRQSSIKRAWPDALDLLLICVESG 197
+ + P+++ V + LI GF ++ + R++ I+ P A+ + +
Sbjct: 63 NPISFLPYEISVLLLFLILVGGFFLFAYMYPQTVAAGRKTRIELDLPYAVTYMQALSTT- 121
Query: 198 ISIDQALRRVAEDIGGQSVPLSEEMLLTIAELS-FLPNRQVAFENFYNRTQMDCVRNATQ 256
+++ + V+++ +S+E + I ++ F + A N T
Sbjct: 122 MTLFSIFKSVSDN-EDLYGEVSKECGMIIRDVEYFGDDLLTAMRNVQESTPSPTFSELLN 180
Query: 257 ALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVII 315
L + G S+ D + R + E E ++ + + F + ++I+
Sbjct: 181 DLAMVFKTGGSMTDFFASKSAHYRETAMQELENTLKTMEIMAEIYVTAFVAGPIAIMIM 239
>gi|227494419|ref|ZP_03924735.1| conserved hypothetical protein [Actinomyces coleocanis DSM 15436]
gi|226832153|gb|EEH64536.1| conserved hypothetical protein [Actinomyces coleocanis DSM 15436]
Length = 351
Score = 60.3 bits (145), Expect = 4e-07, Method: Composition-based stats.
Identities = 44/204 (21%), Positives = 82/204 (40%), Gaps = 9/204 (4%)
Query: 119 VRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQK--RQ 176
VRL+ + + LG+ W+ G D V + G + A VW+ LV K Q
Sbjct: 148 VRLLAALPAVGLGLAWLLGADLPAFITGTFWGWLVAVAGGGLWVAGFVWVRRLVAKFHEQ 207
Query: 177 SSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQ 236
A+ L C+ +G+++ ++L +A G + + + +
Sbjct: 208 KRENVDPVVAVRLFAACLVAGLAVPRSLEVIAAGCGYPN------LAVVSRLFLLGADSS 261
Query: 237 VAFENFYNRTQMDCVRN-ATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLG 295
E + D V A++ + G+ +L ++V R ERL+ + + LG
Sbjct: 262 EVTEFLSSVAASDVVTTHLGLAILTAWMRGSDPLATLELVVQRLRRERLLGVQVEIQKLG 321
Query: 296 PKLTVPMIIFFLPVLILVIIGPAI 319
L +P+ + FLP +L+ + P
Sbjct: 322 VWLALPLGLCFLPAFVLLGVVPVA 345
>gi|126466360|ref|YP_001041469.1| type II secretion system protein [Staphylothermus marinus F1]
gi|126015183|gb|ABN70561.1| type II secretion system protein [Staphylothermus marinus F1]
Length = 591
Score = 60.3 bits (145), Expect = 4e-07, Method: Composition-based stats.
Identities = 45/252 (17%), Positives = 100/252 (39%), Gaps = 9/252 (3%)
Query: 77 SKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIF 136
+ + + L + + N+ N +R +G + + + + I + + +I +F
Sbjct: 4 WDWVYRYFEGLGKYILRMYPNLSNDIRKSGMHLYPEVYASFMAFMSILISGVTIVLIILF 63
Query: 137 GYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVES 196
K+ + + ++L+ ++ + + + + R I+ +P L + V S
Sbjct: 64 AVVKI-----YIVLPFLVLVPFLTYILLAYLPALIGSSRAGGIEGEFPYTTAYLSMMVMS 118
Query: 197 GISIDQALRRV--AEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNA 254
G+S A R+ A + +S LS+ +L + L + AF +RT R+
Sbjct: 119 GLSPYVAFERITHASKVFTKSAELSQRFILLVRVL--GRDPLTAFSMLAHRTPSPTARDL 176
Query: 255 TQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVI 314
+ + R G + D L SE L++ + A L L + + L ++ L +
Sbjct: 177 LMGYVTTVRAGGDVADYLNKKARLLFSELLVKMKIIADRLAGLLEAYLALVLLSMISLTV 236
Query: 315 IGPAILSIIDTM 326
+ +S I +
Sbjct: 237 MYFVTVSFISAV 248
>gi|237733160|ref|ZP_04563641.1| predicted protein [Mollicutes bacterium D7]
gi|229383704|gb|EEO33795.1| predicted protein [Coprobacillus sp. D7]
Length = 315
Score = 60.3 bits (145), Expect = 4e-07, Method: Composition-based stats.
Identities = 51/306 (16%), Positives = 110/306 (35%), Gaps = 45/306 (14%)
Query: 20 TAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREI---LRKQQITSLQKDSASSRLRTRD 76
T +++ LI A +I + ++SV E E+ ++ + + + S +
Sbjct: 7 TIIALLPLITATLIVVFIT------LQSVTSEMELKKVIKATTKSMIDAKVSDSVKEQKK 60
Query: 77 SKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIF 136
++NF+ K N +KL G Y + V II I+ +
Sbjct: 61 KSYIKNFIDKQN-----------SKLNLVGI--TYKYETCIAAASGVFIIAAIIAKLLFK 107
Query: 137 GYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVES 196
L+ Y + GAV+L ++ + ++ + + + ++ + +
Sbjct: 108 AGPMLMVYLGLVFAGAVLLA-----------VNKRAETKKEELTLEFLEKINEISAHLSV 156
Query: 197 GISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQ 256
G +I AL + ++ S L E++ L+ +F Y Q++ ++
Sbjct: 157 GKTIPNALDEIIKE-QNTSQVLINELITVKQNLNLGYPLSKSFMLAYEHLQIEEIKTFAM 215
Query: 257 ALIQSDRYGTSIGDSLRV----LVSETRSERLMEAEKKAASLGPKLTV-------PMIIF 305
L + G +I + L+ S+ + + + + KLTV ++IF
Sbjct: 216 TLSVYEETGGNIIEVLKANDNFFQSKIKIKNTQKVYISSLKTSQKLTVGIPLGFIVLVIF 275
Query: 306 FLPVLI 311
P
Sbjct: 276 INPSFF 281
>gi|261402163|ref|YP_003246387.1| Type II secretion system F domain protein [Methanocaldococcus
vulcanius M7]
gi|261369156|gb|ACX71905.1| Type II secretion system F domain protein [Methanocaldococcus
vulcanius M7]
Length = 301
Score = 60.3 bits (145), Expect = 4e-07, Method: Composition-based stats.
Identities = 37/205 (18%), Positives = 86/205 (41%), Gaps = 8/205 (3%)
Query: 125 IIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWP 184
+ F+ + II ++ + + A+ L PS+ N + +++ P
Sbjct: 35 LAFIGVLIILSMIIFHVINLTIKGMIIAIALYVGALISLPSILYENKM----ETLENNIP 90
Query: 185 DALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLP-NRQVAFENFY 243
AL ++++ +ESG SI++AL V ++ +S + + + + A
Sbjct: 91 QALYIMILTLESGRSINEALEEVVKN---NIKEVSNVFKKVLYLMEKQKISFEEAMTIVS 147
Query: 244 NRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMI 303
N ++ + +I++ +YG ++ DSLRVL RL + + + + +I
Sbjct: 148 NLYDSKVLKMLARIMIENRKYGGNLADSLRVLAKTLEDFRLYKRQLLSVTASGLAVGFII 207
Query: 304 IFFLPVLILVIIGPAILSIIDTMKD 328
+ + + ++G +++I M
Sbjct: 208 LCGVIPAVAALLGAYLITISKMMGG 232
>gi|154250529|ref|YP_001411353.1| type II secretion system protein [Parvibaculum lavamentivorans
DS-1]
gi|154154479|gb|ABS61696.1| type II secretion system protein [Parvibaculum lavamentivorans
DS-1]
Length = 291
Score = 60.3 bits (145), Expect = 4e-07, Method: Composition-based stats.
Identities = 29/182 (15%), Positives = 64/182 (35%), Gaps = 4/182 (2%)
Query: 130 LGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDL 189
L I IF + ++ + I +KR +++ A D
Sbjct: 67 LTAILIFVLCVWSSLVILSGLIVATVVVLSSLLVVAAIIDYRARKRMNALSDAMLGYFDR 126
Query: 190 LLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMD 249
+ + G S+ AL R + + E TI ++ + + T +
Sbjct: 127 VRQLLVVGNSLSVALARATQ---SSPPIVIEFFSPTIRRIANGAGVAESVNQLADETDLY 183
Query: 250 CVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPV 309
+R A+ + R+G S+ L L+ R + E + ++ + + ++ LP+
Sbjct: 184 ELRLFGTAIETNLRFGGSLTSILSNLIDNIRRRAAVMREVRGSTSQIRASA-WVLGLLPM 242
Query: 310 LI 311
++
Sbjct: 243 IV 244
>gi|84385700|ref|ZP_00988731.1| putative TadB [Vibrio splendidus 12B01]
gi|84379680|gb|EAP96532.1| putative TadB [Vibrio splendidus 12B01]
Length = 304
Score = 60.3 bits (145), Expect = 4e-07, Method: Composition-based stats.
Identities = 33/193 (17%), Positives = 65/193 (33%), Gaps = 10/193 (5%)
Query: 123 VPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRA 182
+ + F I + F D + +I I ++ F L R+ K
Sbjct: 79 ILLFFSISSVAVYFINDWFFRLEYWKVWLGIIPILFIMFIL------KLSGLREKKFKDN 132
Query: 183 WPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENF 242
+PDAL++L + SG SI A V + + +E L +
Sbjct: 133 FPDALNILSGALSSGQSIVHAFEYVGTQLDN---EVGKEFKKMSERLLIGEDPDDVLARS 189
Query: 243 YNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPM 302
+ + + G + + + + R +E +K A + + + +
Sbjct: 190 ASTFPYVEYFFFASTIRINLSRGGQLKNVINRINRIMFEARAIEKKKNALTSEARSSAKI 249
Query: 303 IIFFLPVLILVII 315
I LPV+ + I+
Sbjct: 250 IA-ALPVIFMCIL 261
>gi|320533995|ref|ZP_08034553.1| type II secretion system F domain protein [Actinomyces sp. oral
taxon 171 str. F0337]
gi|320133783|gb|EFW26173.1| type II secretion system F domain protein [Actinomyces sp. oral
taxon 171 str. F0337]
Length = 307
Score = 60.3 bits (145), Expect = 4e-07, Method: Composition-based stats.
Identities = 50/280 (17%), Positives = 107/280 (38%), Gaps = 10/280 (3%)
Query: 48 VAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGF 107
+ R+ R ++ S + D+ SLR + L + + ++ L G
Sbjct: 37 LDTRRDEGRMREDVRRLNPSEADTPEWVDTLSLR--ITSLVRRTGIDLSSLTGDLAVVG- 93
Query: 108 RSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKL-LEYPFQLRVGAVILIGYVGFCAPSV 166
SL +V + + + ++ + + + + + + + +G VG P++
Sbjct: 94 ---RSLERHMVTSVFLGVGGFAAPLLIVALMQVMGVPLGWSVPLLLSVALGVVGLLLPTL 150
Query: 167 WISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTI 226
+ + + + LDL+ + + +G + +AL A + L L +
Sbjct: 151 RLRRDADEARRDFRHVVGSYLDLVAMSLSAGRGVPEALD-AASSLSDDPAMLRIRDALDV 209
Query: 227 AELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLME 286
A L A + ++D +R+ + AL G I +SL S R L +
Sbjct: 210 ARLR-GDTPWAALGRLGTQLRIDELRDLSAALALVAEDGAKIRESLGARASSMRRRDLSD 268
Query: 287 AEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
AE KA + V ++ + I+ ++ PA+ II ++
Sbjct: 269 AEGKAGENSESMLVAQLVVAM-GFIVFLVYPALTGIIGSV 307
>gi|20808466|ref|NP_623637.1| hypothetical protein TTE2067 [Thermoanaerobacter tengcongensis MB4]
gi|20517084|gb|AAM25241.1| conserved hypothetical protein [Thermoanaerobacter tengcongensis
MB4]
Length = 309
Score = 60.3 bits (145), Expect = 4e-07, Method: Composition-based stats.
Identities = 52/300 (17%), Positives = 115/300 (38%), Gaps = 44/300 (14%)
Query: 14 LAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLR 73
L ++ TA+S FS+I + + + EI+R+ + +
Sbjct: 6 LLFSLITALSAFSIIMFLYLLKEYKKQ------------EIIRRMERQLIA--------- 44
Query: 74 TRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGII 133
+ N ++ L +L + +I+ L+ G + + N++L + ++ IF + I
Sbjct: 45 --PKERKFNTLEVLGFGKVLKNFDIL--LKRTGIKKVDAENLILFLSVLNTFIFALFII- 99
Query: 134 WIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL-DLLLI 192
+ V L + F + + + + QKR + +A+ D+
Sbjct: 100 -------------KNEVFWAFLAPALIFVSVPLVLEKIAQKRYVKFNLQFAEAVQDIADY 146
Query: 193 CVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVR 252
SG +I AL +V I PL +E+ +A++ + A ++F + V
Sbjct: 147 LKISG-NIVNALEKV---IDTTENPLKDEIKKIVAKVDAGISLYEALKDFAKESGSPLVE 202
Query: 253 NATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLIL 312
+++ + + + D + + ++ + + + K TV MII +L+L
Sbjct: 203 AWVDSMVFAGQMKANTADICQKMSAKIKERIRQNNKISSFMKSTKSTVIMIIAITILLML 262
>gi|294496203|ref|YP_003542696.1| type II secretion system F domain protein [Methanohalophilus mahii
DSM 5219]
gi|292667202|gb|ADE37051.1| Type II secretion system F domain protein [Methanohalophilus mahii
DSM 5219]
Length = 641
Score = 59.9 bits (144), Expect = 5e-07, Method: Composition-based stats.
Identities = 26/167 (15%), Positives = 67/167 (40%), Gaps = 4/167 (2%)
Query: 154 ILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGG 213
I+ + P + + ++ S ++ P+ L L E+GI + A+ V+
Sbjct: 405 IVFSFFIISIPFIVFYEIKRRWVSKVESEMPEFLKKLASINEAGIRLSSAITLVS---RS 461
Query: 214 QSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLR 273
+ L+ E+ + LS+ N + + F R + + +I++ + + L
Sbjct: 462 KIGVLNIEIKKMASHLSWGGNLEEVLKKFEYRVRTEFNSRIITFIIKASESTSDVISVLN 521
Query: 274 VLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAIL 320
+ SE + +++A + + + + F + + I+ ++ L
Sbjct: 522 IAASEA-EMQSQLKRERSAEMTVYVFIVYVAFLVFLFIVYVLAAYFL 567
Score = 49.9 bits (118), Expect = 5e-04, Method: Composition-based stats.
Identities = 37/257 (14%), Positives = 87/257 (33%), Gaps = 28/257 (10%)
Query: 82 NFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKL 141
K + + + L++A F + + I F I GII+ F +L
Sbjct: 10 RLFGKHAYQKKDEYPKLYHSLKSARFPIP-ADQYISTGYFYSLISFFITGIIFYFIASRL 68
Query: 142 L----------------EYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPD 185
+ + ++ + P +W R++ + ++
Sbjct: 69 FKILDISIIDDMRIIAILSSLIIALLFSTILFNIQMKLPLLW----ASTRKAYLDQSLTH 124
Query: 186 ALDLL-LICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELS-FLPNRQVAFENFY 243
A+ L + G+S+ + +++ ++E I ++ F + A +N
Sbjct: 125 AVAYLYALSKGGGMSLFDIFKSLSQQ-RHIYGVAADEFGYIIRDMEYFGYDMLTALKNAN 183
Query: 244 NRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETR----SERLMEAEKKAASLGPKLT 299
+ + + +N ++ G + L+ E R E+ E A +T
Sbjct: 184 DNSPSEKYKNFLDGMLSIVSSGGDVTSYLKNKSEEYRFLASREQKTFLETLAILAEVYIT 243
Query: 300 VPMIIFFLPVLILVIIG 316
V ++ + IL+++G
Sbjct: 244 VFVVGPIFLITILIVLG 260
>gi|283778972|ref|YP_003369727.1| type II secretion system protein [Pirellula staleyi DSM 6068]
gi|283437425|gb|ADB15867.1| type II secretion system protein [Pirellula staleyi DSM 6068]
Length = 289
Score = 59.9 bits (144), Expect = 5e-07, Method: Composition-based stats.
Identities = 31/197 (15%), Positives = 71/197 (36%), Gaps = 13/197 (6%)
Query: 119 VRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSS 178
+R+V ++ ++LG+I L + ++ V + +
Sbjct: 62 LRIVPYLLGVVLGLIIWLVVGFSLTLSIAFGLIVAMMSAEVEAYL--------ATMKSAK 113
Query: 179 IKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVA 238
++R DA+DL++ + +G + A+ E+ S PL ++ +A + + Q
Sbjct: 114 LERQLADAIDLMIGALGAGTGVTSAMAAAIEE---SSYPLKGQLEDLLARIRLGDDPQAV 170
Query: 239 FENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKL 298
F + R ++ + L G S+ +L R +E ++ S +
Sbjct: 171 FRSLSQRIPLETFLLFSSTLAVHWEVGGSLAPTLASAGRTIRD--RIEIGRRIQSNIAQS 228
Query: 299 TVPMIIFFLPVLILVII 315
V + L + +
Sbjct: 229 QVSTVFILLLTYFIAAV 245
>gi|296130403|ref|YP_003637653.1| Type II secretion system F domain protein [Cellulomonas flavigena
DSM 20109]
gi|296022218|gb|ADG75454.1| Type II secretion system F domain protein [Cellulomonas flavigena
DSM 20109]
Length = 306
Score = 59.9 bits (144), Expect = 5e-07, Method: Composition-based stats.
Identities = 38/218 (17%), Positives = 71/218 (32%), Gaps = 20/218 (9%)
Query: 98 IVNKLRAAGF-RSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILI 156
+L AG RS +++++ V V L +G+ +FG ++ L
Sbjct: 65 TEEQLLLAGEERSPLAVSLIAVGGGVAVAWLLAVGLAPVFGLLGVVAVVVGL-------- 116
Query: 157 GYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSV 216
++S Q+R + P+ LL +G +A
Sbjct: 117 --------RFYLSRAQQRRNEAFIGQMPELARLLSNATSAG---LSIASALALAANELDA 165
Query: 217 PLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLV 276
P EM + + F + A R V L+ S R G S+ +LR +
Sbjct: 166 PAGPEMARVASRMRFGEDLDTAIGELTARLPSREVAVLASTLLVSARSGGSLVTALRDIA 225
Query: 277 SETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVI 314
+ + E + T ++I L+ ++
Sbjct: 226 DTLEERKEIRREVRTVLAQSTSTGYLVIGMGFALLFLL 263
>gi|311697135|gb|ADQ00007.1| type II secretion system protein [marine bacterium HP15]
Length = 305
Score = 59.9 bits (144), Expect = 5e-07, Method: Composition-based stats.
Identities = 31/191 (16%), Positives = 65/191 (34%), Gaps = 12/191 (6%)
Query: 120 RLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSI 179
+ + ++G++ I +E L + W ++++ I
Sbjct: 78 KAAFLAVLAVIGLLMIGMTRGWIEAGAGLFFIVTAAVT---------WWRVTFERQRRQI 128
Query: 180 KRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAF 239
P LD ++ + G S++Q++ D PL + + + +
Sbjct: 129 FEELPSILDGMIRSISVGRSVEQSVVAAFSDGSPVFDPLIFRLKNAVGQ---GRDYTRVI 185
Query: 240 ENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLT 299
+ F Q+ + A S R+G+S+ L + RS + + E AA+ + T
Sbjct: 186 DEFAALYQIPDLVQVAIAFRTSSRFGSSLRPVLMEVAKAIRSRQDLRREFMAATAETRFT 245
Query: 300 VPMIIFFLPVL 310
P L
Sbjct: 246 AVAFAIIPPGL 256
>gi|254524987|ref|ZP_05137042.1| Flp pilus assembly protein TadB [Stenotrophomonas sp. SKA14]
gi|219722578|gb|EED41103.1| Flp pilus assembly protein TadB [Stenotrophomonas sp. SKA14]
Length = 318
Score = 59.9 bits (144), Expect = 5e-07, Method: Composition-based stats.
Identities = 33/194 (17%), Positives = 70/194 (36%), Gaps = 9/194 (4%)
Query: 123 VPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRA 182
+P++ L+ G++ +L +L+ +G WI + ++ +
Sbjct: 93 LPVMLLVPGVV--LSLTAMLRLGTAWMFPLTLLLYALGCWL---WIMRRTTRLRAQLLHQ 147
Query: 183 WPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENF 242
PD LD L+ G S+ A + + S PL + T+ + A
Sbjct: 148 LPDFLDNLVRLTALGNSLQAAFQVAS---MQTSAPLRGLLDTTVRYARSGMDLDRALSLA 204
Query: 243 YNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPM 302
+MD ++ + + S R G L+ + R + E A + +++
Sbjct: 205 AQPYRMDVLKVLSVVIGVSVRIGGRSDQILQRMGDFMRDLEQAQQELAATTSETRMSA-W 263
Query: 303 IIFFLPVLILVIIG 316
++ LP V++
Sbjct: 264 VLGLLPPASAVLMA 277
>gi|134295598|ref|YP_001119333.1| type II secretion system protein [Burkholderia vietnamiensis G4]
gi|134138755|gb|ABO54498.1| type II secretion system protein [Burkholderia vietnamiensis G4]
Length = 324
Score = 59.9 bits (144), Expect = 5e-07, Method: Composition-based stats.
Identities = 36/200 (18%), Positives = 65/200 (32%), Gaps = 7/200 (3%)
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
I + + L + + G L+ VW+++ +Q+R+ I R P L
Sbjct: 101 AIGALAVLLAIAGLATHRAGVLAGLAALVCGGAMF--GVWLASRIQRRRLKIVRQIPSFL 158
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQ 247
D ++ V G S+ A + + PL + L A + +
Sbjct: 159 DGIVRLVTLGNSVPAAFQAA---LLTCEEPLRGCLDHVSRMLRSGVEIDRAMLHVAKVYR 215
Query: 248 MDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLT--VPMIIF 305
L S +YG L + R E E A S +L+ V +++
Sbjct: 216 TKEFELLGSVLRLSVKYGGRADVMLERMAVFMRDLEQAERELTAMSAETRLSAFVLVMLP 275
Query: 306 FLPVLILVIIGPAILSIIDT 325
+V+ P L +
Sbjct: 276 IAIGSFVVMTNPRYLEGMWN 295
>gi|86144314|ref|ZP_01062646.1| Flp pilus assembly protein TadB [Vibrio sp. MED222]
gi|85837213|gb|EAQ55325.1| Flp pilus assembly protein TadB [Vibrio sp. MED222]
Length = 304
Score = 59.9 bits (144), Expect = 5e-07, Method: Composition-based stats.
Identities = 32/198 (16%), Positives = 70/198 (35%), Gaps = 11/198 (5%)
Query: 117 LVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQ 176
+ ++LV+ I + + L F + + V + + F +NL ++
Sbjct: 75 MSLKLVLFISVTTSATYALNEF--FLRQDFIVCLIVVEPLLFFVFY------NNLKARQV 126
Query: 177 SSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQ 236
K +PDAL++L + SG SI A V + + + +E L +
Sbjct: 127 ERFKTNFPDALNILSGAISSGQSIIHAFEYVGKQLDN---EVGKEFKFMAERLLIGEDPD 183
Query: 237 VAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGP 296
E N + + G + D + + R +E +K A +
Sbjct: 184 DVLERSSNTFPYLEYFFFASTIRINLARGGQLKDVINKINRLMFDSRAVEKKKNALTSEA 243
Query: 297 KLTVPMIIFFLPVLILVI 314
+ + +I + ++++
Sbjct: 244 RASAKIIACLPVIFLIIL 261
>gi|104779903|ref|YP_606401.1| type II/IV secretion system membrane protein [Pseudomonas
entomophila L48]
gi|95108890|emb|CAK13586.1| Putative type II/IV secretion system membrane protein [Pseudomonas
entomophila L48]
Length = 292
Score = 59.9 bits (144), Expect = 5e-07, Method: Composition-based stats.
Identities = 27/162 (16%), Positives = 59/162 (36%), Gaps = 7/162 (4%)
Query: 166 VWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLT 225
++S +++ I P LD + +++G ++ A V + PL ML
Sbjct: 105 FYLSWRCRRQLRQIIEQLPGLLDYSVRSLKAGRTLSDA---VLGGVEATREPLRSAMLRV 161
Query: 226 IAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLM 285
+ A D +R L + R+G + + + L+ R
Sbjct: 162 RRNVQLGVPLDDAVSELAELYGQDELRMFALGLRINQRHGGNASELMENLIKLIREHEQG 221
Query: 286 EAEKKAASLGPKLTVPMIIFFLPVLIL---VIIGPAILSIID 324
+ + +A + ++T I+ LP+ ++ + P L +
Sbjct: 222 DRQLRAMTGETRITA-WILGALPLGMVGYFLFANPGYLMAMW 262
>gi|147921248|ref|YP_684938.1| putative type II secretion system protein [uncultured methanogenic
archaeon RC-I]
gi|110620334|emb|CAJ35612.1| putative bacterial type II secretion system protein [uncultured
methanogenic archaeon RC-I]
Length = 652
Score = 59.9 bits (144), Expect = 5e-07, Method: Composition-based stats.
Identities = 38/210 (18%), Positives = 86/210 (40%), Gaps = 5/210 (2%)
Query: 116 LLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKR 175
++ L VPI L+ I + Y L + V ++L+ P + L K+
Sbjct: 371 YQILYLTVPIAALLF-IGLAYPYFSLPYFSMISHVDDILLLAAAVAIIPFIICWELRSKK 429
Query: 176 QSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNR 235
+ A P+ L L ESG+++ A++ + + L+ E+ ++ + +
Sbjct: 430 VRKMDAAVPEFLKRLASFNESGLTLTMAIKAL---LNSNMGVLNSEIRKIWTDIEWGADA 486
Query: 236 QVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLG 295
+ A F R +R + ++ I ++L + ++ + + E E++ ++
Sbjct: 487 KEALIRFEYRVNTASIRRVVTLITKASESTGDIKETLFIAAADAAAIQ-SEREERFLNML 545
Query: 296 PKLTVPMIIFFLPVLILVIIGPAILSIIDT 325
L++ I FF+ + IL + L ++
Sbjct: 546 LYLSIIYISFFVFLYILYTLSTVFLPVVPA 575
Score = 42.2 bits (98), Expect = 0.100, Method: Composition-based stats.
Identities = 23/142 (16%), Positives = 50/142 (35%), Gaps = 2/142 (1%)
Query: 175 RQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSF-LP 233
RQS+I + P A+ + G+S+ + R + ++ E + +
Sbjct: 134 RQSAIDQMLPHAVTFMHAMRSGGMSLLD-IFRAINEHREIYGEVTLEFQAVVQGVELLGM 192
Query: 234 NRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAAS 293
+ + + T D ++N ++ G + LR + ++ + E +
Sbjct: 193 DLITSLRHAATITPSDHLKNFFESTATHMESGGDLEKFLRTRADQFQAIAVQEHKTLLEL 252
Query: 294 LGPKLTVPMIIFFLPVLILVII 315
L V + F L L+ I
Sbjct: 253 LSMLAEVYVTAFVAGPLFLITI 274
>gi|73668275|ref|YP_304290.1| transporter [Methanosarcina barkeri str. Fusaro]
gi|72395437|gb|AAZ69710.1| transporter [Methanosarcina barkeri str. Fusaro]
Length = 660
Score = 59.9 bits (144), Expect = 6e-07, Method: Composition-based stats.
Identities = 31/163 (19%), Positives = 71/163 (43%), Gaps = 4/163 (2%)
Query: 154 ILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGG 213
+I V P + + R I PD L L ESGI + +L+ ++E G
Sbjct: 424 FVIFIVVALIPFIIFYEIKAWRMRKIDEKMPDFLKSLSSMNESGIMLANSLKIISESKMG 483
Query: 214 QSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLR 273
LS+E+ +LS+ + A N N + +++++ + + + L
Sbjct: 484 I---LSKELKKLKEDLSWGTSTSKALMNLENSIKTPSSSRILHIIVKANESTSDLKNVLS 540
Query: 274 VLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIG 316
+ + R++ M+ +++++++ + + FF+ + I+ I+
Sbjct: 541 ITAKQARNDEDMK-KERSSTMVVYVITIYVAFFVFLFIVYILA 582
Score = 54.1 bits (129), Expect = 3e-05, Method: Composition-based stats.
Identities = 37/198 (18%), Positives = 75/198 (37%), Gaps = 25/198 (12%)
Query: 144 YPFQLRVGAVILI--GYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISID 201
YP L VG ++ + +V F ++ RQ+SI ++ A+ + + G+SI
Sbjct: 95 YPLALLVGLILFLVSFFVVFLVAYIYPYFQANNRQASIDKSMLPAITYMYALTKGGMSIY 154
Query: 202 QALRRVAEDIGGQSVPLSEEMLLTIAELSF-LPNRQVAFENFYNRTQMDCVRNATQALIQ 260
R ++ +EE+ + ++ + + + + RT + ++ LI
Sbjct: 155 DVFRSLSR-YSYIFGATAEEISYVVRDMDYLGKDFITSLKIAKERTPSEIFKDFVDGLII 213
Query: 261 SDRYGT---------SIGDSLRVLVSETRSERLMEAEKK------AASLGPKLTVPMIIF 305
GT L + + +RL + A L +T+ ++ F
Sbjct: 214 VSSSGTITEYVKNKSEQYQGLAEMANRNLLQRLDVLAEIYVTALVAGPLFVMVTLVVLQF 273
Query: 306 FLPV------LILVIIGP 317
FLP +++ II P
Sbjct: 274 FLPASAQILYMLIYIILP 291
>gi|238897545|ref|YP_002923224.1| putative tight adherance operon protein B [Candidatus Hamiltonella
defensa 5AT (Acyrthosiphon pisum)]
gi|229465302|gb|ACQ67076.1| putative tight adherance operon protein B [Candidatus Hamiltonella
defensa 5AT (Acyrthosiphon pisum)]
Length = 300
Score = 59.9 bits (144), Expect = 6e-07, Method: Composition-based stats.
Identities = 38/197 (19%), Positives = 77/197 (39%), Gaps = 20/197 (10%)
Query: 121 LVVPIIFLILGII---WIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQS 177
+++P+ I ++F LL + F + A I+ + + K+Q
Sbjct: 73 ILLPLFCFIFAFFINHFLFKLSYLLCFVFAIIFIAFIIFIQILYY-----------KKQK 121
Query: 178 SI--KRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNR 235
I +P+ L + + SGIS+++ L++ ++I G L +E L LS N
Sbjct: 122 KIYFTETFPELLLIFNMGSVSGISVNEILKKAGQEIKGG---LGKECDLIFRRLSIGENI 178
Query: 236 QVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLG 295
F + Y R L+ + G + + + L + ME K A +
Sbjct: 179 NTVFYDAYQRFSYPEFYMFINILMLNINQGGQLRELMHRLNQVVTNYNKMEKRKMAMTGE 238
Query: 296 PKLTVPMIIFFLPVLIL 312
++++ ++ PV+
Sbjct: 239 IRMSIWVVTLI-PVIFF 254
>gi|289641001|ref|ZP_06473170.1| type II secretion system protein [Frankia symbiont of Datisca
glomerata]
gi|289509121|gb|EFD30051.1| type II secretion system protein [Frankia symbiont of Datisca
glomerata]
Length = 286
Score = 59.5 bits (143), Expect = 6e-07, Method: Composition-based stats.
Identities = 34/191 (17%), Positives = 58/191 (30%), Gaps = 17/191 (8%)
Query: 99 VNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGY 158
L AG V P FL++ L+ A +
Sbjct: 38 KELLAQAGIPG------------VSPDQFLMISTGVGLVVGLLVLAFTATWSLAGAFFVF 85
Query: 159 VGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPL 218
P + + R ++ WPD +D L V +G+S+ + L V VPL
Sbjct: 86 AA-LLPRALVVRRRRTRMHDLRELWPDVVDNLASAVRAGMSLPEGLASVG---VRGPVPL 141
Query: 219 SEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRY-GTSIGDSLRVLVS 277
+ + + + + ++L + GT +G LR L +
Sbjct: 142 RPAFTRFGEDYRATGSFSASLDRLADDLADPIADRIIESLRMAREVGGTDLGRLLRTLST 201
Query: 278 ETRSERLMEAE 288
R + AE
Sbjct: 202 FLREDARTRAE 212
>gi|256827716|ref|YP_003151675.1| Flp pilus assembly protein TadB [Cryptobacterium curtum DSM 15641]
gi|256583859|gb|ACU94993.1| Flp pilus assembly protein TadB [Cryptobacterium curtum DSM 15641]
Length = 321
Score = 59.5 bits (143), Expect = 6e-07, Method: Composition-based stats.
Identities = 32/186 (17%), Positives = 64/186 (34%), Gaps = 8/186 (4%)
Query: 115 ILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQK 174
++VR L+ + +L P + ++ S S+ +++
Sbjct: 86 RFIIVRDEALCSCLVGFFLVCLVGGAVLGAPLMGAAIPIAILALA-----SQVASHAIER 140
Query: 175 RQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPN 234
R+ +++ A PDA+ + IC+ +G+S Q R+ E+ G PL E L+
Sbjct: 141 REDALREALPDAVWSIGICLHAGLSQQQTFSRLEEESHG---PLKEVFSRVSQALAAGSP 197
Query: 235 RQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASL 294
A + + AL + G S+ L E + +
Sbjct: 198 LDEALALLKGDGSIRELTFVATALEIQHQAGGSMKQVLETAGEMLAHETNLRRSLAVNTA 257
Query: 295 GPKLTV 300
+L+
Sbjct: 258 QARLSA 263
>gi|91783014|ref|YP_558220.1| putative tight adherence TadB related transmembrane protein
[Burkholderia xenovorans LB400]
gi|91686968|gb|ABE30168.1| Putative tight adherence TadB related transmembrane protein
[Burkholderia xenovorans LB400]
Length = 359
Score = 59.5 bits (143), Expect = 6e-07, Method: Composition-based stats.
Identities = 39/207 (18%), Positives = 67/207 (32%), Gaps = 9/207 (4%)
Query: 103 RAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFC 162
A F ++L + P ++ + G+ L+ V + + F
Sbjct: 113 ARARFMVRHALARAGIANAKGPAALAGTLVLLLCGWAALVGGALAAGVALCACVMFFYFL 172
Query: 163 APSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEM 222
++ V KR+ I R P LD ++ + G S+ A + + PL E +
Sbjct: 173 -----LTLRVNKRRQQIVRQLPLFLDGIVRLITLGNSVPAAFQAA---LQTTEAPLRECL 224
Query: 223 LLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSE 282
L A + + L S +YG L + S R
Sbjct: 225 DYVSRMLRTGVEIDRALSQVALIYGVRELELVGAVLRLSVKYGGRADVMLERMASFMRDL 284
Query: 283 RLMEAEKKAASLGPKLTVPMIIFFLPV 309
E E A S +L+ ++ LPV
Sbjct: 285 EHAERELVAMSAETRLSS-WVLAMLPV 310
>gi|313126822|ref|YP_004037092.1| archaeal flagella assembly protein j [Halogeometricum borinquense
DSM 11551]
gi|312293187|gb|ADQ67647.1| archaeal flagella assembly protein J [Halogeometricum borinquense
DSM 11551]
Length = 682
Score = 59.5 bits (143), Expect = 6e-07, Method: Composition-based stats.
Identities = 31/210 (14%), Positives = 84/210 (40%), Gaps = 8/210 (3%)
Query: 107 FRSEYSLNILLVVRLVVPIIF-LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPS 165
FR ++L V + ++G +D +L P + YV P
Sbjct: 389 FRDNPLYTLVLTVPAATVFVLTAVIGGAAPLSWDAMLNQPIWGTFVWWYIPAYV-IGIPL 447
Query: 166 VWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLT 225
+ + + + ++ + L L ++G ++ ++++ V++ S L++E +
Sbjct: 448 AFFHSWNNRSRQAVVGKLSENLRKLSSANDTGQTLLESVKTVSD---TSSGKLADEFEVM 504
Query: 226 IAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLM 285
A++++ + + A F N+ + + + + ++ + I D L + ++ +
Sbjct: 505 HAKVNYGMSLRSALVEFNNKYHIPRLARTVKLISKAQEASSQITDVLSTAAQASENQDDI 564
Query: 286 EAEKKAASLGPKLTVPMIIFFLPVLILVII 315
E E+ ++ V +I+ L+ V+
Sbjct: 565 ERER---KSRTRMQVAIILMTYLTLLAVMA 591
Score = 45.6 bits (107), Expect = 0.010, Method: Composition-based stats.
Identities = 25/171 (14%), Positives = 56/171 (32%), Gaps = 26/171 (15%)
Query: 106 GFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPS 165
G + + + L +P L+ G+++ F L G ++ + +
Sbjct: 96 GIPTPDAQTAAFLESLTMPFGVLVSGLVF-------GSIGFALGFGTLVAVPF------- 141
Query: 166 VWISNLVQKRQSSIKRAWPDALDLLLICVESGIS---IDQALRRVAEDIGGQSVPLSEEM 222
+ R+ I PDA+ + G++ I +A+ R ++ E
Sbjct: 142 ----SKASSRKREINMLLPDAISFMYALSVGGLNQLEILEAMGRA----EDTYGEVAREF 193
Query: 223 LLTIAELS-FLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSL 272
+ E F + + A + T D + ++ G ++ L
Sbjct: 194 QSIVQETEYFGTDYRNAIRDQAMVTPSDELSQFLTDMLSIVNSGGNMEQFL 244
>gi|153812903|ref|ZP_01965571.1| hypothetical protein RUMOBE_03310 [Ruminococcus obeum ATCC 29174]
gi|149830981|gb|EDM86071.1| hypothetical protein RUMOBE_03310 [Ruminococcus obeum ATCC 29174]
Length = 275
Score = 59.5 bits (143), Expect = 6e-07, Method: Composition-based stats.
Identities = 35/218 (16%), Positives = 83/218 (38%), Gaps = 10/218 (4%)
Query: 111 YSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISN 170
Y + V +L + ++G + + VG ++++ +G +
Sbjct: 35 YIYRMSFVEKLTGGALGFLVGAFVCMTF--FRNFLLSGIVGILLILPGIG-----KYREF 87
Query: 171 LVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIG---GQSVPLSEEMLLTIA 227
L +RQ + + D L+ L +G + A D+ G+ + E+ + +
Sbjct: 88 LKARRQKGLLIQFRDMLESLTASYSTGKNTQGAFEDAYGDLADIYGKKADIVHEIEMIVN 147
Query: 228 ELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEA 287
+ N + +NF R+ +D V + S RYG ++ ++ + ME
Sbjct: 148 GIYNGQNIEALLKNFAERSHLDDVESFATIFEVSSRYGGNLKKAVGDTYRIINEKIEMEM 207
Query: 288 EKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDT 325
E + K + +++ ++++ + G +SI+
Sbjct: 208 EIRTLLTANKNELNIMMLMPLIIMVTLSGMGSMSIVQN 245
>gi|311744547|ref|ZP_07718347.1| type II secretion system protein [Aeromicrobium marinum DSM 15272]
gi|311312166|gb|EFQ82083.1| type II secretion system protein [Aeromicrobium marinum DSM 15272]
Length = 232
Score = 59.5 bits (143), Expect = 7e-07, Method: Composition-based stats.
Identities = 41/200 (20%), Positives = 82/200 (41%), Gaps = 8/200 (4%)
Query: 127 FLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDA 186
L++G++ + ++ +P+ VGA + + Q+RQ+ + R P A
Sbjct: 39 GLVVGVLTVGTGIVVVGWPWGAVVGAAAVPTVR--RLVDRAGTTARQRRQAEMVRLLPAA 96
Query: 187 LDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRT 246
LDL++ +E+G S A PL+EE+ L + ++
Sbjct: 97 LDLVVTALEAGRSPGG---AFAVVADAAPAPLAEELRGLARRLEVAADPLDVWDAL---V 150
Query: 247 QMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFF 306
+ + +AL +S+ G + + + R R E ++ S+G P+ + F
Sbjct: 151 RDPTLAPVGRALRRSEVTGMPAARVVARVADDLRRTRRAEIAHRSRSVGVATAAPLGLCF 210
Query: 307 LPVLILVIIGPAILSIIDTM 326
LP LV I P ++ ++ +
Sbjct: 211 LPAFFLVGIVPTVVGMVRVV 230
>gi|73539234|ref|YP_299601.1| type II secretion system protein [Ralstonia eutropha JMP134]
gi|72122571|gb|AAZ64757.1| type II secretion system protein [Ralstonia eutropha JMP134]
Length = 312
Score = 59.5 bits (143), Expect = 7e-07, Method: Composition-based stats.
Identities = 36/258 (13%), Positives = 81/258 (31%), Gaps = 16/258 (6%)
Query: 54 ILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSL 113
+L +K+ A + +R + + + + + ++ + R++
Sbjct: 25 LLLANAQARARKEQADAFVRAQTEQVRLRYAAGQDPQLQQPARDLKRRWEDFLRRADLVP 84
Query: 114 NILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQ 173
N V+ P + L L + G + + + N V+
Sbjct: 85 NRRTYVKWGGPCVLLTLAALASGGVLGAAAMAVVCAAVSAFV------------LWNRVR 132
Query: 174 KRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLP 233
+ + + P LD ++ + G S+ A + I PL + ++ +
Sbjct: 133 RIRQKMLLQLPGFLDGVVRLMTIGSSVPAAFQ---NSIANTDAPLRQCLVQAVHLQRAGK 189
Query: 234 NRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAAS 293
A + + L S RYG + + R + E A S
Sbjct: 190 ELDQAVLQMGRIYHLQELVLLASVLRLSVRYGGRADVMMERTAAFMRDREQAQRELMALS 249
Query: 294 LGPKLTVPMIIFFLPVLI 311
+L+ I+ LP+++
Sbjct: 250 AETRLSA-WILGLLPLVV 266
>gi|238062112|ref|ZP_04606821.1| type II secretion system protein [Micromonospora sp. ATCC 39149]
gi|237883923|gb|EEP72751.1| type II secretion system protein [Micromonospora sp. ATCC 39149]
Length = 288
Score = 59.5 bits (143), Expect = 7e-07, Method: Composition-based stats.
Identities = 32/195 (16%), Positives = 68/195 (34%), Gaps = 7/195 (3%)
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
+ ++++ G L P +G + V + + ++A L
Sbjct: 101 FVGAVLFLGGVSVPLTVPLVGSIGMAFVAALVA----HRSVLARADAARDEFRQAVCTYL 156
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQ 247
DL+ + + + QAL R A G E L IA++ +R
Sbjct: 157 DLVALQLSAAHGPVQALERAAAVCDGWVFDRIRE-SLRIAQMQMHSPWDE-LRELADRIG 214
Query: 248 MDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFL 307
+ + + + S G + ++LR R + + +A ++ +L +P +
Sbjct: 215 IPELGDVGAIMRSSGSEGAQVHETLRSRADSLRDQIRTDNLARAEAVTSRLDIPGSLLVF 274
Query: 308 PVLILVIIGPAILSI 322
VL+ + P I +
Sbjct: 275 -VLLGFAVYPFIARL 288
>gi|225376646|ref|ZP_03753867.1| hypothetical protein ROSEINA2194_02288 [Roseburia inulinivorans DSM
16841]
gi|225211529|gb|EEG93883.1| hypothetical protein ROSEINA2194_02288 [Roseburia inulinivorans DSM
16841]
Length = 240
Score = 59.5 bits (143), Expect = 7e-07, Method: Composition-based stats.
Identities = 32/206 (15%), Positives = 86/206 (41%), Gaps = 14/206 (6%)
Query: 125 IIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWP 184
LI GI+++F + + +V++ ++ + V+KR+ +++ +
Sbjct: 13 FGILISGIVYLFYH---------IVPVSVVIGFLTAVYVEKMYAESTVKKRKKTLRLQFK 63
Query: 185 DALDLLLICVESG----ISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFE 240
D L + + V +G ++ AL + ++ + E + + + FE
Sbjct: 64 DFLGSMSVAVRAGNVEIYAVKSALDDLRLSYSSKADIVLEVENMILQYEKGGIPLKELFE 123
Query: 241 NFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV 300
+F +R++++ + + + GD L R + +E E + + K +
Sbjct: 124 DFADRSELEDIHSFAAVYSVIEGKSDRFGDILTQTEEIIRDKIEIEQEIETTIISAK-SE 182
Query: 301 PMIIFFLPVLILVIIGPAILSIIDTM 326
M++ +P++I+V + ++D++
Sbjct: 183 TMVMLIMPIVIVVAMSGMGSGLLDSL 208
>gi|304405043|ref|ZP_07386703.1| Type II secretion system F domain protein [Paenibacillus
curdlanolyticus YK9]
gi|304345922|gb|EFM11756.1| Type II secretion system F domain protein [Paenibacillus
curdlanolyticus YK9]
Length = 274
Score = 59.5 bits (143), Expect = 8e-07, Method: Composition-based stats.
Identities = 29/189 (15%), Positives = 65/189 (34%), Gaps = 5/189 (2%)
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
+ +L Y F + + ++G P + L++KR+ ++ + +AL
Sbjct: 41 FLFSAAAGLIGAFVLFYTFYQSLVVAFGLVWLGILIPRFRNAGLLEKRRVRLQLQFKEAL 100
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSV----PLSEEMLLTIAELSFLPNRQVAFENFY 243
+ + +G S++ A D+ + E + + + F
Sbjct: 101 YSVTSSLAAGRSVENAFIAAEADLQLLYPGGTADIVREFAMIRHRMENGETLESGLSQFA 160
Query: 244 NRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMI 303
NR Q++ + R G + D +R + L ++ A L K I
Sbjct: 161 NRAQLEEITQFVDVFSTCKRTGGDLVDVIRRTSQVIGEK-LDIQQEIAVMLAQKRFESRI 219
Query: 304 IFFLPVLIL 312
+ +P + +
Sbjct: 220 LTAVPFVFI 228
>gi|302559338|ref|ZP_07311680.1| integral membrane protein [Streptomyces griseoflavus Tu4000]
gi|302476956|gb|EFL40049.1| integral membrane protein [Streptomyces griseoflavus Tu4000]
Length = 368
Score = 59.1 bits (142), Expect = 8e-07, Method: Composition-based stats.
Identities = 34/141 (24%), Positives = 59/141 (41%), Gaps = 6/141 (4%)
Query: 180 KRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAF 239
R P A DLL C+ +G A + V E +GG P+ E + AE+ A+
Sbjct: 221 ARQLPLAADLLSACIAAGAGPVLAAQAVGETLGG---PVGEALARGAAEVRLGGEPAAAW 277
Query: 240 ENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLT 299
+ + + L ++D G + + L +E R+E A +A ++
Sbjct: 278 HRLAS---VPGAAALARLLERADVSGLPLAAPVGRLAAEARAEWTRAATARARRAAVMVS 334
Query: 300 VPMIIFFLPVLILVIIGPAIL 320
P+ + FLP I V + P ++
Sbjct: 335 APVGLCFLPAFITVGVVPVVI 355
>gi|255281814|ref|ZP_05346369.1| conserved hypothetical protein [Bryantella formatexigens DSM 14469]
gi|255267487|gb|EET60692.1| conserved hypothetical protein [Bryantella formatexigens DSM 14469]
Length = 245
Score = 59.1 bits (142), Expect = 8e-07, Method: Composition-based stats.
Identities = 24/180 (13%), Positives = 64/180 (35%), Gaps = 11/180 (6%)
Query: 154 ILIGYVGFCAPSVWISNLV----QKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAE 209
++ + +++ +KRQ + + + + + + +G S++ A
Sbjct: 35 LIAFILCLPLFKMFLKIRRESCMKKRQRELSAQFLAGMQSVSVALSAGCSVENAFGEALR 94
Query: 210 DIGGQSVP---LSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGT 266
++ + E + +L + + R+ ++ +RN + R G
Sbjct: 95 ELRQLYEEDAMIVREFRYIVVQLGMNRSLEQLLTGLAVRSGIEDIRNFADIFSAAKRTGG 154
Query: 267 SIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILV---IIGPAILSII 323
++ +R V + + L K I+ +P +ILV ++ P L ++
Sbjct: 155 NLIAIIRNTVQCISQKEETR-REINTCLSAKRLEQNIMSIVPCMILVYVQMVSPGFLDVM 213
>gi|269986709|gb|EEZ92989.1| type II secretion system protein [Candidatus Parvarchaeum
acidiphilum ARMAN-4]
Length = 348
Score = 59.1 bits (142), Expect = 9e-07, Method: Composition-based stats.
Identities = 27/158 (17%), Positives = 59/158 (37%), Gaps = 7/158 (4%)
Query: 122 VVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKR 181
++ +I +LG I +F + Y +GA + I + G +S + I++
Sbjct: 49 ILLMIGAVLGAILVFYFLHSPLY----ALGAAVGIFFGGIILLRSMLSMFADSVAAKIEK 104
Query: 182 AWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFEN 241
PD L L+ + +G+ + + + + L+ + E N A
Sbjct: 105 VLPDMLLLMAANLRAGMIPENSFI---ASMKPEFGKLNYLLNKAAIETQAGKNFSEALLE 161
Query: 242 FYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSET 279
+ T + +++ + + + R G + L L S
Sbjct: 162 MNDMTNSEFFKDSVRIISEGIRSGAELHLILENLASNL 199
>gi|94312589|ref|YP_585798.1| type II secretion system protein, pilus assembly, transmembrane
part [Cupriavidus metallidurans CH34]
gi|93356441|gb|ABF10529.1| type II secretion system protein, pilus assembly, transmembrane
part [Cupriavidus metallidurans CH34]
Length = 309
Score = 59.1 bits (142), Expect = 9e-07, Method: Composition-based stats.
Identities = 31/255 (12%), Positives = 83/255 (32%), Gaps = 16/255 (6%)
Query: 57 KQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNIL 116
+ + + A + L + + + + ++ + R++
Sbjct: 25 AAARSRSRAEDARAHLTAQTEQVRARYATVSDPTPQSATRDLRRRWDDLMRRADLKPTRR 84
Query: 117 LVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQ 176
+ + VP++ +L + V+++ + F + +++ +
Sbjct: 85 TYLVVGVPMVLAVL-------GGAIAGGGIGAGAMLVMVLTLLCFF-----VWLRIRRIK 132
Query: 177 SSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQ 236
+ R P LD ++ + G S+ A + + PL + ++ I
Sbjct: 133 EKMLRQLPGFLDGVVRLMTIGSSVPAAFQ---NSVANTEPPLRQCLVQVIHLQRAGKELD 189
Query: 237 VAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGP 296
A +D + + L S RYG + + R + E A S
Sbjct: 190 QAVLQMGRAYDLDELVIVSSVLRLSQRYGGRADVVMERTATFMRDREEAQRELMALSAET 249
Query: 297 KLTVPMIIFFLPVLI 311
+++ ++ LP+++
Sbjct: 250 RMSA-WVLGLLPLIV 263
>gi|152986618|ref|YP_001350204.1| hypothetical protein PSPA7_4868 [Pseudomonas aeruginosa PA7]
gi|150961776|gb|ABR83801.1| hypothetical protein PSPA7_4868 [Pseudomonas aeruginosa PA7]
Length = 293
Score = 59.1 bits (142), Expect = 9e-07, Method: Composition-based stats.
Identities = 22/128 (17%), Positives = 50/128 (39%), Gaps = 3/128 (2%)
Query: 173 QKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFL 232
++R + R P LD ++ + +G ++ AL + ED PL + L +
Sbjct: 113 RRRLKRMIRQMPRFLDQVVRSLHAGRTLGDALMQAVEDAED---PLRDIFGLARNHVLLG 169
Query: 233 PNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAA 292
+ A + +++ +R + + RYG + D L +V + + A
Sbjct: 170 IHLPEALQEVAELYEVEELRILALGVSVNHRYGGNTTDLLDGIVRLIHEREKLSRQLHAM 229
Query: 293 SLGPKLTV 300
+ +++
Sbjct: 230 TGETRISA 237
>gi|221066736|ref|ZP_03542841.1| type II secretion system protein [Comamonas testosteroni KF-1]
gi|220711759|gb|EED67127.1| type II secretion system protein [Comamonas testosteroni KF-1]
Length = 317
Score = 59.1 bits (142), Expect = 1e-06, Method: Composition-based stats.
Identities = 30/148 (20%), Positives = 52/148 (35%), Gaps = 4/148 (2%)
Query: 168 ISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIA 227
+ + KR+ + + P LD ++ + G S A + PL + + A
Sbjct: 132 LWRRLSKRREQLLQQLPSFLDNMVRLITIGNSPHAAFQLAV---VNVPAPLGDALQQASA 188
Query: 228 ELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEA 287
L P+ A ++ S RYG L + + R + E
Sbjct: 189 SLRASPDLGHAMGLLERSWRLSEFGLLAAVFRMSTRYGGRADQVLERVSAYIRDRQSAER 248
Query: 288 EKKAASLGPKLTVPMIIFFLPVLILVII 315
E A S +L+ I+ LPV + +I
Sbjct: 249 ELHALSAEVRLSA-WILALLPVAVGGLI 275
>gi|170732850|ref|YP_001764797.1| type II secretion system protein [Burkholderia cenocepacia MC0-3]
gi|169816092|gb|ACA90675.1| type II secretion system protein [Burkholderia cenocepacia MC0-3]
Length = 326
Score = 58.7 bits (141), Expect = 1e-06, Method: Composition-based stats.
Identities = 37/209 (17%), Positives = 76/209 (36%), Gaps = 14/209 (6%)
Query: 119 VRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSS 178
LV+ + ++L +W +L L G+V+++ +WI++ + +R+
Sbjct: 101 AGLVLSLAIVVLLALWAGMAGGVLAAAAALVAGSVLVV---------LWITSRISRRRLK 151
Query: 179 IKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVA 238
I R P LD ++ V G S+ A + + +PL + L + A
Sbjct: 152 IVRQLPSFLDGIVRLVTLGNSVPAAFQSA---LQTAEMPLRRCLDDVSRMLRSGVDIDRA 208
Query: 239 FENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKL 298
+ + ++ L S RYG L + + R E E A S +L
Sbjct: 209 MLHIAHTYRIREFELVGAVLRLSVRYGGRADVMLDRMSTFMRDLEQAERELSAMSAETRL 268
Query: 299 TVPMIIFFLPVL--ILVIIGPAILSIIDT 325
+ ++ + ++ P + +
Sbjct: 269 SAWVLALLPIAVGSFVIATSPRYFTAMWN 297
>gi|254245562|ref|ZP_04938883.1| type II secretion system protein [Burkholderia cenocepacia PC184]
gi|124870338|gb|EAY62054.1| type II secretion system protein [Burkholderia cenocepacia PC184]
Length = 204
Score = 58.7 bits (141), Expect = 1e-06, Method: Composition-based stats.
Identities = 34/177 (19%), Positives = 61/177 (34%), Gaps = 5/177 (2%)
Query: 150 VGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAE 209
+ A G VW+++ +Q+R+ I R P LD ++ V G S+ A +
Sbjct: 1 MLACFAAIICGSAILGVWLASRIQRRRLKIVRQIPSFLDGIVRLVTLGNSVPAAFQSA-- 58
Query: 210 DIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIG 269
+ PL + + L A + + + L S +YG
Sbjct: 59 -LLTTEEPLRGCLDVVSRMLRGGIEIDRAMMHIAKIYRTEEFELVGSVLRLSVKYGGRAD 117
Query: 270 DSLRVLVSETRSERLMEAEKKAASLGPKLT--VPMIIFFLPVLILVIIGPAILSIID 324
L + R E E A S +L+ V +++ +V+ P L +
Sbjct: 118 VMLERMAVFMRDLEQAERELTAMSSETRLSAFVLVMLPIAIGSFVVMTNPKYLYGMW 174
>gi|238923483|ref|YP_002936999.1| hypothetical protein EUBREC_1103 [Eubacterium rectale ATCC 33656]
gi|238875158|gb|ACR74865.1| Hypothetical protein EUBREC_1103 [Eubacterium rectale ATCC 33656]
Length = 286
Score = 58.7 bits (141), Expect = 1e-06, Method: Composition-based stats.
Identities = 34/208 (16%), Positives = 93/208 (44%), Gaps = 7/208 (3%)
Query: 113 LNILLVVRLVVPIIFLILGIIWI--FGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISN 170
+N+L+ + I +L G I +G + Y + + ++ + V P I +
Sbjct: 39 INVLIAFVIGACIGYLFYGGIGKDEYGQATTVTYCLNVIIPVIVGVIAVKLYIPVR-IQS 97
Query: 171 LVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSE---EMLLTIA 227
+++K+++ + + + D L+ L + +G ++ + R V +D+ Q + E+ L ++
Sbjct: 98 IIKKQKNQLNKQFRDMLEALSTSLGAGKNVIDSFRSVYDDMKMQYEDGAYIISELELLLS 157
Query: 228 ELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEA 287
+ + + +F R+ + + + + R G +I D++R E ++++ A
Sbjct: 158 GMDNNIDIEDLLLDFGERSGNEDIESFAKVFQICYRKGGNIKDTVRS-TYEILNDKMEIA 216
Query: 288 EKKAASLGPKLTVPMIIFFLPVLILVII 315
E + T ++ +P+ ++ ++
Sbjct: 217 EDIETVVTANKTEQNVMLIMPIGLIGMM 244
>gi|330873866|gb|EGH08015.1| type II secretion system protein F domain [Pseudomonas syringae pv.
glycinea str. race 4]
Length = 198
Score = 58.7 bits (141), Expect = 1e-06, Method: Composition-based stats.
Identities = 26/145 (17%), Positives = 55/145 (37%), Gaps = 4/145 (2%)
Query: 165 SVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLL 224
+++S + R + + LD + ++SG ++ A V I PL + M
Sbjct: 10 RLFVSWRYEVRVRRMIQQLAQLLDHTVRSLKSGRTLADA---VLHGIEATDQPLKDGMSR 66
Query: 225 TIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERL 284
+ + A +F + D L + RYG + + + L+ R
Sbjct: 67 IERNVQLGVSLPDAARDFAELYERDEFHLFALGLRVNHRYGGNASELMENLIKLIRDREQ 126
Query: 285 MEAEKKAASLGPKLTVPMIIFFLPV 309
+ +A + ++T +++ LPV
Sbjct: 127 AGRQLRAMTGETRMTA-LVLALLPV 150
>gi|284164235|ref|YP_003402514.1| type II secretion system F domain protein [Haloterrigena turkmenica
DSM 5511]
gi|284013890|gb|ADB59841.1| Type II secretion system F domain protein [Haloterrigena turkmenica
DSM 5511]
Length = 697
Score = 58.7 bits (141), Expect = 1e-06, Method: Composition-based stats.
Identities = 39/207 (18%), Positives = 85/207 (41%), Gaps = 12/207 (5%)
Query: 114 NILLVVRLVVPIIFLILGIIWIFG-----YDKLLEYPFQLRVGAVILIGYVGFCAPSVWI 168
N L + L VP +I+ + G +D LLE V + YV P
Sbjct: 398 NPLFTLALTVPASLVIVTTAMMNGSAPTSWDGLLENAVWGTFIYVYVPLYV-IAIPLSVF 456
Query: 169 SNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAE 228
+ ++S+ + L L ++G+++ ++L+ V++ G+ L+ E + +
Sbjct: 457 REWNVRHRNSVVSQLSEDLRKLSSSNDTGLTLLESLKAVSDTTSGK---LAREFEMMHTK 513
Query: 229 LSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAE 288
+++ + + A F N+ + + T+ + ++ I D LR + + +E E
Sbjct: 514 VNYGTSLKQALIEFNNKYHIPRLARTTRLITEAQEASNQISDVLRTAARASENHDDIERE 573
Query: 289 KKAASLGPKLTVPMIIFFLPVLILVII 315
+ ++ V +II ++ VI
Sbjct: 574 R---KSRTRMQVVIIIMTFMTVLAVIA 597
Score = 38.7 bits (89), Expect = 1.1, Method: Composition-based stats.
Identities = 22/189 (11%), Positives = 67/189 (35%), Gaps = 12/189 (6%)
Query: 140 KLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGIS 199
++ F + + +GF + + R+ I D++ + G++
Sbjct: 116 RIPALVFFTGLVFGSIGFAIGFGSLVAIPYSRASTRRRQINMLLTDSVSFMYALSVGGLN 175
Query: 200 IDQALRRVAEDIGGQSVPLSEEMLLTIAELS-FLPNRQVAFENFYNRTQMDCVRNATQAL 258
+ + +A+ +++E + E F + + A T D + +
Sbjct: 176 QLEIIEAMAQ-ADDTYGEVAKEFQSIVKETEYFDIDYRTAIRKQALETPSDELSQFLTDM 234
Query: 259 IQSDRYGTSIGDSLRVLVSETRSERLMEAE-KKAASLGPKLTVP---MIIFFLPVLILVI 314
+ G + + + + + + A+ ++ +L M + P+L+++I
Sbjct: 235 LSIVNSGGDM----ESFLEDKKEKHMRTAKQEQELTLETLELFGEMYMTLSLFPLLLIII 290
Query: 315 IGPAILSII 323
+ ++ +I
Sbjct: 291 M--VVMQMI 297
>gi|28900580|ref|NP_800235.1| putative TadB protein [Vibrio parahaemolyticus RIMD 2210633]
gi|28808960|dbj|BAC62068.1| putative TadB [Vibrio parahaemolyticus RIMD 2210633]
Length = 289
Score = 58.7 bits (141), Expect = 1e-06, Method: Composition-based stats.
Identities = 35/190 (18%), Positives = 65/190 (34%), Gaps = 10/190 (5%)
Query: 126 IFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPD 185
F I D + + + A+ I +V F +S + +R K +PD
Sbjct: 67 FFAASSIAVYCVNDWFFMFEYWKVLLALEPILFVMFILK---LSGIQAQR---FKDNFPD 120
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
AL++L + SG SI A V + + EE L +
Sbjct: 121 ALNILSGALSSGQSIVHAFEYVGTQLDN---EVGEEFKKMSERLLIGEDPDDVLARSAAS 177
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
+ + G + D + + R +E +K A + + + +I
Sbjct: 178 FPYVEYFFFAATIRINLSRGGQLKDVINRINRIMFEARAIEKKKNALTSEARASAKIIA- 236
Query: 306 FLPVLILVII 315
LPV+ ++I+
Sbjct: 237 ALPVIFIMIL 246
>gi|300711546|ref|YP_003737360.1| type IV pilus biogenesis complex membrane subunit [Halalkalicoccus
jeotgali B3]
gi|299125229|gb|ADJ15568.1| type IV pilus biogenesis complex membrane subunit [Halalkalicoccus
jeotgali B3]
Length = 669
Score = 58.7 bits (141), Expect = 1e-06, Method: Composition-based stats.
Identities = 27/142 (19%), Positives = 62/142 (43%), Gaps = 10/142 (7%)
Query: 176 QSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNR 235
+++I + D L L E+G+++ +++R VAE S PL+ E + A++++ +
Sbjct: 449 RTAITGSLSDTLRKLSSANETGMTLLESIRVVAE---TSSGPLAREFEVIHAKVAYGTSL 505
Query: 236 QVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRV--LVSETRSERLMEAEKKAAS 293
+ + F N + + + + ++ + I L SE R E ++
Sbjct: 506 KDSLTEFNNEYHIPRLARTVKLISKAQEASSQITAVLTTAAQASENRDE-----IERERR 560
Query: 294 LGPKLTVPMIIFFLPVLILVII 315
++ V +I+ L+ V+
Sbjct: 561 SRTRMQVVIILMTYLTLLAVMA 582
Score = 35.6 bits (81), Expect = 9.2, Method: Composition-based stats.
Identities = 38/212 (17%), Positives = 72/212 (33%), Gaps = 20/212 (9%)
Query: 71 RLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLIL 130
RL DS+ F + LK + + + + L A S +L +V +
Sbjct: 23 RLFGEDSQFAAEF--QTTLKRARMGDTVEHYLSRALAYGVLSGGLLWIVGIAAGYGLFAT 80
Query: 131 GII------WIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWIS---------NLVQKR 175
G++ D+LLE R+ +++LI V F + ++ + V R
Sbjct: 81 GLVSPPIIGVSIPNDRLLELVIAARIPSLVLITGVTFGSAGFALAFGALVAIPYSRVSAR 140
Query: 176 QSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELS-FLPN 234
+ I D++ + G++ + L +A +S E + E F +
Sbjct: 141 KREIDMLLADSIAFMYALSVGGLNQLEILEAIAN-ADDTYGEVSREFQSIVHETEYFDTD 199
Query: 235 RQVAFENFYNRTQMDCVRNATQ-ALIQSDRYG 265
+ A T + + L D G
Sbjct: 200 YRSAIRTQARETPSEELSQFLTDMLSIVDSGG 231
>gi|315606115|ref|ZP_07881146.1| type II secretion system protein [Actinomyces sp. oral taxon 180
str. F0310]
gi|315312397|gb|EFU60483.1| type II secretion system protein [Actinomyces sp. oral taxon 180
str. F0310]
Length = 292
Score = 58.7 bits (141), Expect = 1e-06, Method: Composition-based stats.
Identities = 31/171 (18%), Positives = 66/171 (38%), Gaps = 10/171 (5%)
Query: 122 VVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKR 181
+V + ++ ++W+ +P L V + P W+ + V +++
Sbjct: 58 LVALSLVVGAVVWVAILALTGAWPVALIVALGVA------FLPYAWVVSRVAAHAKTVRA 111
Query: 182 AWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFEN 241
AWP+ +D ++ V +G S+ Q L +A++ PL + S A +
Sbjct: 112 AWPEVVDAMVSGVRAGTSLPQVLCELADE---GPQPLRFAFDAFSRDYSANGRFASALDR 168
Query: 242 FYNRTQMDCVRNATQALIQSDRYGTS-IGDSLRVLVSETRSERLMEAEKKA 291
+ + +AL + G + + L+ L S R + + E +A
Sbjct: 169 MKDEVRDPVADRIVEALRIARSVGGADLTRLLQDLASLLREDARVRGELEA 219
>gi|107022597|ref|YP_620924.1| type II secretion system protein [Burkholderia cenocepacia AU 1054]
gi|116689546|ref|YP_835169.1| type II secretion system protein [Burkholderia cenocepacia HI2424]
gi|105892786|gb|ABF75951.1| type II secretion system protein [Burkholderia cenocepacia AU 1054]
gi|116647635|gb|ABK08276.1| type II secretion system protein [Burkholderia cenocepacia HI2424]
Length = 326
Score = 58.7 bits (141), Expect = 1e-06, Method: Composition-based stats.
Identities = 37/209 (17%), Positives = 76/209 (36%), Gaps = 14/209 (6%)
Query: 119 VRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSS 178
LV+ + ++L +W +L L G+V+++ +WI++ + +R+
Sbjct: 101 AGLVLSLAIVVLLALWAGMAGGVLAAAAALVAGSVLVV---------LWITSRISRRRLK 151
Query: 179 IKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVA 238
I R P LD ++ V G S+ A + + +PL + L + A
Sbjct: 152 IVRQLPSFLDGIVRLVTLGNSVPAAFQSA---LQTAEMPLRRCLDDVSRMLRSGVDIDRA 208
Query: 239 FENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKL 298
+ + ++ L S RYG L + + R E E A S +L
Sbjct: 209 MLHIAHTYRIREFELVGAVLRLSVRYGGRADVMLDRMSTFMRDLEQAERELSAMSAETRL 268
Query: 299 TVPMIIFFLPVL--ILVIIGPAILSIIDT 325
+ ++ + ++ P + +
Sbjct: 269 SAWVLALLPIAVGSFVIATSPRYFTAMWN 297
>gi|311899777|dbj|BAJ32185.1| hypothetical protein KSE_64260 [Kitasatospora setae KM-6054]
Length = 295
Score = 58.7 bits (141), Expect = 1e-06, Method: Composition-based stats.
Identities = 33/217 (15%), Positives = 76/217 (35%), Gaps = 6/217 (2%)
Query: 111 YSLNILLVVRLVVPIIFLIL-GIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWIS 169
S + +L+ + L G + + P + + L+ + + P ++
Sbjct: 82 RSPARFMAHKLLFSFLGFALPGYLTVLAELIGDGLPLAVPLLVGPLLAGLFWFIPDGIVA 141
Query: 170 NLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGG-QSVPLSEEMLLTIAE 228
++ ++ L+L+ + + +ALRR A G + + + +
Sbjct: 142 GEAKEARTEYLHGIAAYLELVALERAADCGPAEALRRAASVGRGTVFRKIRDALERAATD 201
Query: 229 LSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAE 288
+ + +++ + S G ++ D+LR R E L E
Sbjct: 202 R---LPPWDGLDALAQELGLTPLQDVADIMRISGVDGAAVYDTLRARAKSLRGELLSEEL 258
Query: 289 KKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDT 325
KA + ++ P L + ++I PAI ++ T
Sbjct: 259 AKANTDSERMVAPGSALTLLMT-VLIAFPAIYQMLST 294
>gi|323486496|ref|ZP_08091819.1| hypothetical protein HMPREF9474_03570 [Clostridium symbiosum
WAL-14163]
gi|323400199|gb|EGA92574.1| hypothetical protein HMPREF9474_03570 [Clostridium symbiosum
WAL-14163]
Length = 257
Score = 58.7 bits (141), Expect = 1e-06, Method: Composition-based stats.
Identities = 32/151 (21%), Positives = 63/151 (41%), Gaps = 4/151 (2%)
Query: 142 LEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISID 201
Y F A +L VGF P L +RQ ++R + +A+ +L + +G S++
Sbjct: 39 TAYVFYRSFTAFLLFLPVGFLYPLAKKKELALQRQEELRRQFKEAVLILSSSLGAGYSVE 98
Query: 202 QALR---RVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQAL 258
A R E++ G+ +++E +L + F +R+ ++ ++N +
Sbjct: 99 NAFAGSLRELEELYGREGMITKEFSYIAHQLRMNRTVETLLAEFADRSGLEEIKNFSDIF 158
Query: 259 IQSDRYGTSIGDSLRVLVSETRSERLMEAEK 289
S R + + V S+RL E+
Sbjct: 159 AVSKRSRGELVSVVNHTVHVI-SDRLQVREE 188
>gi|111026115|ref|YP_708398.1| hypothetical protein RHA1_ro10047 [Rhodococcus jostii RHA1]
gi|110824958|gb|ABH00240.1| conserved hypothetical protein [Rhodococcus jostii RHA1]
Length = 299
Score = 58.7 bits (141), Expect = 1e-06, Method: Composition-based stats.
Identities = 37/195 (18%), Positives = 66/195 (33%), Gaps = 22/195 (11%)
Query: 132 IIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLL 191
++ FG P L + L+ F P + I ++ +A +DL+
Sbjct: 114 VLTAFGVGLGWSIPAILSIATAFLL----FLIPDIEIRRRATAARAEFAQALSSYIDLVA 169
Query: 192 ICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAEL----SFLPNRQVAFENFYNRTQ 247
+C GI Q+L R A+ S L EL A
Sbjct: 170 LCRRGGIGTTQSLERAAQVGD------SWVFLRLDEELYEAGRSGEAPWNALTRVSQELG 223
Query: 248 MDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPM----- 302
+ + + + + G S+ SLR + RS + + AA KL +P+
Sbjct: 224 LTELGDLADIMNMTGDKGASVYASLRAKAAGLRSAQASAEQGAAAEATEKLAMPLAGLAG 283
Query: 303 ---IIFFLPVLILVI 314
++ +P L ++
Sbjct: 284 LFIMLLLIPALTIIT 298
>gi|184200571|ref|YP_001854778.1| hypothetical protein KRH_09250 [Kocuria rhizophila DC2201]
gi|183580801|dbj|BAG29272.1| hypothetical membrane protein [Kocuria rhizophila DC2201]
Length = 285
Score = 58.7 bits (141), Expect = 1e-06, Method: Composition-based stats.
Identities = 29/168 (17%), Positives = 56/168 (33%), Gaps = 4/168 (2%)
Query: 125 IIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWP 184
+ I + + G +L + + V P ++ +R + ++ WP
Sbjct: 51 LGAFIGLSLLLAGVAGVLVLALTSAAVFGLCVFLVTLWVPLWFVRRRAHRRTAVLREVWP 110
Query: 185 DALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYN 244
D +D L + +G+ + +AL ++ PL A+ +
Sbjct: 111 DVVDHLRSAIRAGMGLPEALMQL---QYRGPEPLRPAFARFAADYRASGQLHGSLTMLKQ 167
Query: 245 RTQMDCVRNATQALIQSDRY-GTSIGDSLRVLVSETRSERLMEAEKKA 291
R N +AL + GT +G L L R +E +A
Sbjct: 168 RLADPVADNIVEALRVTREVGGTDLGKLLGTLSEFLRENERTRSELEA 215
>gi|111220777|ref|YP_711571.1| hypothetical protein FRAAL1320 [Frankia alni ACN14a]
gi|111148309|emb|CAJ59981.1| conserved hypothetical protein; putative membrane protein [Frankia
alni ACN14a]
Length = 357
Score = 58.4 bits (140), Expect = 1e-06, Method: Composition-based stats.
Identities = 32/202 (15%), Positives = 58/202 (28%), Gaps = 17/202 (8%)
Query: 88 NLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQ 147
+ + L AG R S + + + + L+ F
Sbjct: 27 GPTTMRWEHTTAELLAQAGIRG-LSPRQFVAISVA------------LGLLVGLVVLAFT 73
Query: 148 LRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRV 207
+ P + R ++ WPD +D L V +G+S+ + L V
Sbjct: 74 GTLSLAGAFAVFASLLPRALVVRRRHGRIHDLRELWPDVVDNLASAVRAGMSLPEGLAAV 133
Query: 208 AEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRY-GT 266
Q P + S + + + ++L + GT
Sbjct: 134 GVRGPVQLRPA---FTRFGEDYSATGSFSTCLDRLADELADPVADRIIESLRMAREVGGT 190
Query: 267 SIGDSLRVLVSETRSERLMEAE 288
+G LR L + R + AE
Sbjct: 191 DLGRLLRTLSTFLREDARTRAE 212
>gi|167587312|ref|ZP_02379700.1| type II secretion system protein [Burkholderia ubonensis Bu]
Length = 261
Score = 58.4 bits (140), Expect = 1e-06, Method: Composition-based stats.
Identities = 31/162 (19%), Positives = 54/162 (33%), Gaps = 5/162 (3%)
Query: 166 VWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLT 225
W+ + + +R+ I R P LD ++ V G S+ A + + PL + +
Sbjct: 74 FWLVSRIHRRRLRIVRQLPSFLDGIVRLVTLGNSVPAAFQAA---LLTTEAPLRGCLDVV 130
Query: 226 IAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLM 285
L A + L S RYG L + R
Sbjct: 131 SRMLRTGVEIDRAMVHIAKVYHTREFELVGSVLRLSVRYGGRADVMLERMAVFMRDLEQA 190
Query: 286 EAEKKAASLGPKLT--VPMIIFFLPVLILVIIGPAILSIIDT 325
E E A S +L+ V +++ ++ P+ LS +
Sbjct: 191 ERELVAMSSETRLSAWVLVMLPIAIGGFVIATNPSYLSSMWN 232
>gi|153853656|ref|ZP_01995036.1| hypothetical protein DORLON_01027 [Dorea longicatena DSM 13814]
gi|149753811|gb|EDM63742.1| hypothetical protein DORLON_01027 [Dorea longicatena DSM 13814]
Length = 258
Score = 58.4 bits (140), Expect = 1e-06, Method: Composition-based stats.
Identities = 19/133 (14%), Positives = 51/133 (38%), Gaps = 8/133 (6%)
Query: 155 LIGYVGFCAPSVWISNLVQKRQSS-----IKRAWPDALDLLLICVESGISIDQALRRVAE 209
+ + P +W+ + +S ++ + + + L + +G S++ A +
Sbjct: 48 VWAVIFLILPGIWLYREFLEEESKKKEQEFQKQFREMIQTLSSALNTGYSVENAFYETQK 107
Query: 210 DIGGQSVP---LSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGT 266
++ Q +S E+LL +L + E F + + V++ + + + G
Sbjct: 108 ELKIQYPEEARISRELLLITRKLRMHIPVEQVLEEFAEKVPSEDVKSFVTVFVTAKKSGG 167
Query: 267 SIGDSLRVLVSET 279
+ +R S+
Sbjct: 168 DMIGIIRNTTSQI 180
>gi|315654444|ref|ZP_07907352.1| type II secretion system protein [Mobiluncus curtisii ATCC 51333]
gi|315491479|gb|EFU81096.1| type II secretion system protein [Mobiluncus curtisii ATCC 51333]
Length = 408
Score = 58.4 bits (140), Expect = 1e-06, Method: Composition-based stats.
Identities = 46/235 (19%), Positives = 87/235 (37%), Gaps = 13/235 (5%)
Query: 94 VDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAV 153
V + I L A R + RL+ + LG+ G D + V
Sbjct: 183 VADGIAATLETAAKRHTAQVGPKATARLLGVLPLAALGMAQFIGVDVIDMAFQGGINTWV 242
Query: 154 ILIGYVGFCAPSVWISNLVQKRQSSIKRAW--PDALDLLLICVESGISIDQALRRVAEDI 211
+IG A ++W + ++++ S A+D++ C ++G+S+ L+ V+
Sbjct: 243 FVIGLGLMVAGNLWSAAMIRQATGSSVTGLDPTLAMDIIAACQQNGVSLTSTLQAVSAAS 302
Query: 212 GGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDS 271
+ + L + A+ + +D L + G S
Sbjct: 303 EEAD------LAVVARMLLLGADWDEAWAQ-ADSKWVD----LASVLQPAWEEGASPVPL 351
Query: 272 LRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
L S TR+ + A A LG +L +P+ + LP + I P ++S I+ +
Sbjct: 352 LVRGASRTRTAEIHRAVDAAERLGVRLMIPLGVCLLPAFFALGIVPVVVSTIEDL 406
>gi|298675313|ref|YP_003727063.1| type II secretion system F domain-containing protein
[Methanohalobium evestigatum Z-7303]
gi|298288301|gb|ADI74267.1| Type II secretion system F domain protein [Methanohalobium
evestigatum Z-7303]
Length = 652
Score = 58.4 bits (140), Expect = 1e-06, Method: Composition-based stats.
Identities = 30/172 (17%), Positives = 67/172 (38%), Gaps = 4/172 (2%)
Query: 154 ILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGG 213
I + P + L KR S I+ P+ L E+GI + A+ A+ G
Sbjct: 416 IFYSVLIMIVPFIVFHELRAKRISQIEEQIPEFFKKLASINEAGIMLMDAISMTAQSKVG 475
Query: 214 QSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLR 273
+ E+ ++++ N A + F R + D R +I++ + L
Sbjct: 476 I---IHTEIGKMKEDINWGTNLTQALKKFEYRVRTDLTRRIVTTIIKASESTNDVTSVLN 532
Query: 274 VLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDT 325
+ ++ + +++ + + + + FF+ + I+ I+ LS + +
Sbjct: 533 IAANDA-EVQKQMKNQRSTEMYVYVFIIYMAFFVYLFIVYILTVHFLSSMPS 583
Score = 45.6 bits (107), Expect = 0.010, Method: Composition-based stats.
Identities = 40/222 (18%), Positives = 78/222 (35%), Gaps = 18/222 (8%)
Query: 122 VVPIIFLILGIIWIF--GYDKLLEYPFQLRVGAV--ILIGYVGFCAPSVWI----SNLVQ 173
++F G +++F +E + V ILI +GF S
Sbjct: 66 ASLVVFSDTGALFVFKDLLPNWIEAYALELMACVQGILIFLIGFYTTYFVYLSIPSLKAN 125
Query: 174 KRQSSIKRAWPDALDLL-LICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSF- 231
R++SI ++ L + G+S+ + ++ +EE + ++ F
Sbjct: 126 IRKTSIDQSLIHVTTYLYAMTRGGGLSLFDIFKSLSNH-KHIYGTAAEEFGYIVRDMEFF 184
Query: 232 LPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETR----SERLMEA 287
+ A +N RT R LI G I L+ + R +E+
Sbjct: 185 GHDIITALQNAKLRTPSQNFRELIDGLISILSSGGDITAYLKNKTEQYRSVAKTEQQTFL 244
Query: 288 EKKAASLGPKLTVPMIIFFLPVLILVIIG---PAILSIIDTM 326
E ++V ++ + ILV++G P + I+ +
Sbjct: 245 ETLGILAESYVSVFVVAPLFLMTILVVLGLLNPTSILIMYLL 286
>gi|187923648|ref|YP_001895290.1| type II secretion system protein [Burkholderia phytofirmans PsJN]
gi|187714842|gb|ACD16066.1| type II secretion system protein [Burkholderia phytofirmans PsJN]
Length = 342
Score = 58.4 bits (140), Expect = 1e-06, Method: Composition-based stats.
Identities = 37/175 (21%), Positives = 56/175 (32%), Gaps = 14/175 (8%)
Query: 125 IIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWP 184
I+ L+ G + G V LI V F ++ V KR+ I R P
Sbjct: 124 IVMLLCGWAAMVG---------GALAACVALIACVMFFY--FLLTMRVNKRRQQIVRQLP 172
Query: 185 DALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYN 244
LD ++ + G S+ A + + PL E + L A
Sbjct: 173 LFLDGIVRLITLGNSVPAAFQAA---LQTTEAPLRECLDYVSRMLRTGVEIDRALSQVAQ 229
Query: 245 RTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLT 299
+ + L S +YG L + S R E E A S +L+
Sbjct: 230 IYGVRELELVGAVLRLSVKYGGRADVMLERMASFMRDLEHAERELVAMSSETRLS 284
>gi|146297625|ref|YP_001181396.1| hypothetical protein Csac_2634 [Caldicellulosiruptor
saccharolyticus DSM 8903]
gi|145411201|gb|ABP68205.1| hypothetical protein Csac_2634 [Caldicellulosiruptor
saccharolyticus DSM 8903]
Length = 253
Score = 58.4 bits (140), Expect = 1e-06, Method: Composition-based stats.
Identities = 39/221 (17%), Positives = 84/221 (38%), Gaps = 11/221 (4%)
Query: 108 RSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVW 167
R + + + ++ + IIF +L I F + L V G +G+ P +
Sbjct: 37 RIQSATAKIDKIQSKIQIIFALLMGIAGFFVSAWWTGSYPLAVMGAFGFGAIGYVTPDLI 96
Query: 168 ISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIA 227
++ +K ++ L I ++S + +++ AE + LS+ + A
Sbjct: 97 AKSMAKK----TEKYLTTISTLFEIGIKSNVPLEKIFDTCAEVVK--HAELSKALQRAGA 150
Query: 228 ELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLV--SETRSERLM 285
+ + AFE ++ AL + ++ GTS SL R+ +
Sbjct: 151 VYIKTRDIEQAFEEVETVLTSPELKLFKTALKEVEKVGTSALISLETFANMQNLRANDYL 210
Query: 286 EAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
K++ + + V +++F ++V P I+ +M
Sbjct: 211 SRRKESVTTYSTIAVALVLF---AAMMVYFAPIYNLIMQSM 248
>gi|297581612|ref|ZP_06943534.1| flp pilus assembly protein TadB [Vibrio cholerae RC385]
gi|297534019|gb|EFH72858.1| flp pilus assembly protein TadB [Vibrio cholerae RC385]
Length = 299
Score = 58.4 bits (140), Expect = 1e-06, Method: Composition-based stats.
Identities = 27/147 (18%), Positives = 48/147 (32%), Gaps = 7/147 (4%)
Query: 169 SNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAE 228
L QKR + PD +D L+ + G + + +A G + L + E
Sbjct: 114 QQLQQKRMERFRDELPDIIDGLIRALRVGAPMLAVFQDIANQHQGVTSRL---FHQIVDE 170
Query: 229 LSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAE 288
L + R + R T L G + + L L + RS + A
Sbjct: 171 LRVGRTMADVMKLAAQRMPIAEFRFLTIVLSLQQETGGRLANVLERLGNTLRSRAELNAS 230
Query: 289 KKA----ASLGPKLTVPMIIFFLPVLI 311
+ + K+ + + + VL
Sbjct: 231 IQTITSESRNSAKVLAALPVLVMLVLF 257
>gi|323694362|ref|ZP_08108535.1| hypothetical protein HMPREF9475_03399 [Clostridium symbiosum
WAL-14673]
gi|323501602|gb|EGB17491.1| hypothetical protein HMPREF9475_03399 [Clostridium symbiosum
WAL-14673]
Length = 404
Score = 58.4 bits (140), Expect = 2e-06, Method: Composition-based stats.
Identities = 24/155 (15%), Positives = 55/155 (35%), Gaps = 14/155 (9%)
Query: 173 QKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAE---- 228
+KR+ + + + L L++ + +G+ + +A ++ ED +
Sbjct: 248 KKRECQMMMDYSEILSRLVVFLGAGLPVRKAWAKIVEDYRRTEEKAGKRAAYEEMAAAYY 307
Query: 229 -LSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGT-SIGDSLRVLVSETRSERLME 286
+ A+ F NR ++ R L Q+ + G+ S+ L + +R
Sbjct: 308 LMQRGVPEIQAYSEFGNRCRVLPYRKLAGILEQNVKNGSKSLTPVLEAEMEAAFEQRKNL 367
Query: 287 AEKKAASLGPK--------LTVPMIIFFLPVLILV 313
A + K L + M++ +P +
Sbjct: 368 ARRLGEEASTKLLLPLFMMLLIVMVMITVPAFLAF 402
>gi|296158798|ref|ZP_06841627.1| Type II secretion system F domain protein [Burkholderia sp. Ch1-1]
gi|295891003|gb|EFG70792.1| Type II secretion system F domain protein [Burkholderia sp. Ch1-1]
Length = 356
Score = 58.4 bits (140), Expect = 2e-06, Method: Composition-based stats.
Identities = 38/203 (18%), Positives = 66/203 (32%), Gaps = 9/203 (4%)
Query: 107 FRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSV 166
F ++L + P ++ + G+ L+ V + + F
Sbjct: 114 FMVRHALARAGIANAKGPAALAGTLVLLLCGWAALVGGALAAGVALCACVMFFYFL---- 169
Query: 167 WISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTI 226
++ V KR+ I R P LD ++ + G S+ A + + PL E +
Sbjct: 170 -LTLRVNKRRQQIVRQLPLFLDGIVRLITLGNSVPAAFQAA---LQTTEAPLRECLDYVS 225
Query: 227 AELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLME 286
L A + + L S +YG L + S R E
Sbjct: 226 RMLRTGVEIDRALSQVALIYGVRELELVGAVLRLSVKYGGRADVMLERMASFMRDLEHAE 285
Query: 287 AEKKAASLGPKLTVPMIIFFLPV 309
E A S +L+ ++ LPV
Sbjct: 286 RELVAMSAETRLSS-WVLAMLPV 307
>gi|153836331|ref|ZP_01988998.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus AQ3810]
gi|149750233|gb|EDM60978.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus AQ3810]
gi|328470522|gb|EGF41433.1| putative TadB protein [Vibrio parahaemolyticus 10329]
Length = 304
Score = 58.4 bits (140), Expect = 2e-06, Method: Composition-based stats.
Identities = 35/192 (18%), Positives = 68/192 (35%), Gaps = 11/192 (5%)
Query: 125 IIFLILGIIWIFGYDK-LLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAW 183
I F I ++ + + + + A+ I +V F +S + +R K +
Sbjct: 80 IGFFAASSIAVYCVNDWFFMFEYWKVLLALEPILFVMFILK---LSGIQAQR---FKDNF 133
Query: 184 PDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFY 243
PDAL++L + SG SI A V + + EE L +
Sbjct: 134 PDALNILSGALSSGQSIVHAFEYVGTQLEN---EVGEEFKKMSERLLIGEDPDDVLARSA 190
Query: 244 NRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMI 303
+ + G + D + + R +E +K A + + + +I
Sbjct: 191 ASFPYVEYFFFAATIRINLSRGGQLKDVINRINRIMFEARAIEKKKNALTSEARASAKII 250
Query: 304 IFFLPVLILVII 315
LPV+ ++I+
Sbjct: 251 A-ALPVIFIMIL 261
>gi|190574782|ref|YP_001972627.1| putative type II secretion/pilus assembly transmembrane protein
[Stenotrophomonas maltophilia K279a]
gi|190012704|emb|CAQ46332.1| putative type II secretion/pilus assembly transmembrane protein
[Stenotrophomonas maltophilia K279a]
Length = 313
Score = 58.4 bits (140), Expect = 2e-06, Method: Composition-based stats.
Identities = 49/300 (16%), Positives = 108/300 (36%), Gaps = 29/300 (9%)
Query: 18 ITTAVSIFSLIYAVVIPSLGS-GELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRD 76
+ +SI S++ A+ + G+ E+R S+ + L + + AS
Sbjct: 1 MLGVLSIISVLLALAVWLWGTASNREQRQASLQHAEQQLARGGASGGAPAGASVAAANDP 60
Query: 77 SKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIF 136
++ + L L + L+ AG ++ + L I+++ + L+L ++ +
Sbjct: 61 ARPASAGRRVLPLDGL---------LQRAGLQTGWKLPIMVL------VPGLVLSVVAML 105
Query: 137 GYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVES 196
+P L + + +W+ K ++ + PD LD L+
Sbjct: 106 RLGTAWMFPLTLLLYLLACW---------LWVMRRTTKLRAQLLHQLPDFLDNLVRLTAL 156
Query: 197 GISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQ 256
G S+ A + + S PL + T+ + A +MD ++ +
Sbjct: 157 GNSLQAAFQVAS---MQTSAPLRGLLDTTVRYARSGMDLDRALSLAAQPYRMDVLKVLSV 213
Query: 257 ALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIG 316
+ S R G L+ + R + E A + +++ ++ LP V++
Sbjct: 214 VIGVSVRIGGRSDQILQRMGDFMRDLEQAQQELAATTSETRMSA-WVLGLLPPASAVLMA 272
>gi|290958553|ref|YP_003489735.1| type II secretion system F protein [Streptomyces scabiei 87.22]
gi|260648079|emb|CBG71187.1| putative type II secretion system F protein [Streptomyces scabiei
87.22]
Length = 263
Score = 58.4 bits (140), Expect = 2e-06, Method: Composition-based stats.
Identities = 31/128 (24%), Positives = 53/128 (41%), Gaps = 6/128 (4%)
Query: 193 CVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVR 252
C+ +G S A R V E +GG P+ E + AE+ A+ +
Sbjct: 131 CITAGASPVVAARAVGEALGG---PVGESLARGSAEVRLGSEPAEAWRGLAALPGAGALA 187
Query: 253 NATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLIL 312
L ++D G + L +E R++R A ++A +T P+ + FLP I
Sbjct: 188 RL---LERADESGVPAASPVARLAAEARADRGRSATERARRAAVMITAPVGLCFLPAFIT 244
Query: 313 VIIGPAIL 320
V + P ++
Sbjct: 245 VGVLPVVI 252
>gi|167044732|gb|ABZ09402.1| putative bacterial type II secretion system protein F domain
protein [uncultured marine microorganism
HF4000_APKG7N23]
Length = 255
Score = 58.4 bits (140), Expect = 2e-06, Method: Composition-based stats.
Identities = 29/161 (18%), Positives = 61/161 (37%), Gaps = 17/161 (10%)
Query: 136 FGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVE 195
F + + + F + +G IL VG+ +R ++ WPD L L +
Sbjct: 9 FSAEGIEDIHFIVWIGFGIL-AIVGYLI--YIPKKRKLERIKELEDTWPDVLADLSEELR 65
Query: 196 SGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQV-----AFENFYNRTQMDC 250
+G+ ++ AL +A + M L + + + + + A +NF +++
Sbjct: 66 AGMGVESALDSIANRRN-------DRMGLMLRD--AVSDMRDNGFGIAMKNFAAKSESAM 116
Query: 251 VRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKA 291
+ L + SI +L + E ++ E+ A
Sbjct: 117 ISRIVSILNVALASSGSIATTLENISEEFWEIYMLRKERIA 157
>gi|330465091|ref|YP_004402834.1| type II secretion system protein [Verrucosispora maris AB-18-032]
gi|328808062|gb|AEB42234.1| type II secretion system protein [Verrucosispora maris AB-18-032]
Length = 287
Score = 58.4 bits (140), Expect = 2e-06, Method: Composition-based stats.
Identities = 31/215 (14%), Positives = 76/215 (35%), Gaps = 5/215 (2%)
Query: 108 RSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVW 167
R+ + L++ ++ + L +F + P + V + + +
Sbjct: 78 RTPEQYTLSLLLSALIGLAAPALLSFALFAVG--ISLPLVVPVLGSLGLAALCALVAHRA 135
Query: 168 ISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIA 227
+ + + ++A LDL+ + + + Q+L R A G E L +A
Sbjct: 136 VVTRAEAAREEFRQAVCTYLDLVALQLSAAHGPVQSLERAAAICDGWVFERISE-ALRMA 194
Query: 228 ELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEA 287
++ + +R + + + + S G + ++LR R + +
Sbjct: 195 QMQMHSPWDE-LRDLADRIGIPELGDVGAIMQSSGSEGAQVHETLRSRADSLRDQIRTDN 253
Query: 288 EKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
+A + +L +P + VL+ I P + +
Sbjct: 254 LARAEGVTSRLDIPGALLVF-VLLGFAIYPFLARL 287
>gi|315657630|ref|ZP_07910512.1| type II secretion system protein [Mobiluncus curtisii subsp.
holmesii ATCC 35242]
gi|315492102|gb|EFU81711.1| type II secretion system protein [Mobiluncus curtisii subsp.
holmesii ATCC 35242]
Length = 408
Score = 58.4 bits (140), Expect = 2e-06, Method: Composition-based stats.
Identities = 46/235 (19%), Positives = 87/235 (37%), Gaps = 13/235 (5%)
Query: 94 VDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAV 153
V + I L A R + RL+ + LG+ G D + V
Sbjct: 183 VADGIAATLETAAKRHTAQVGPKATARLLGVLPLAALGMAQFIGVDVIDMAFQGGINTWV 242
Query: 154 ILIGYVGFCAPSVWISNLVQKRQSSIKRAW--PDALDLLLICVESGISIDQALRRVAEDI 211
+IG A ++W + ++++ S A+D++ C ++G+S+ L+ V+
Sbjct: 243 FVIGLGLMVAGNLWSAAMIRQATGSSVTGLDPTLAMDIIAACQQNGVSLTSTLQAVSAAS 302
Query: 212 GGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDS 271
+ + L + A+ + +D L + G S
Sbjct: 303 EEAD------LAVVARMLLLGADWDEAWAQ-ADSKWVD----LASVLQPAWEEGASPVPL 351
Query: 272 LRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
L S TR+ + A A LG +L +P+ + LP + I P ++S I+ +
Sbjct: 352 LVRGASRTRTAEIHRAVDAAERLGVRLMIPLGVCLLPAFFALGIVPVVVSTIEDL 406
>gi|78066134|ref|YP_368903.1| Flp pilus assembly protein TadB [Burkholderia sp. 383]
gi|77966879|gb|ABB08259.1| Flp pilus assembly protein TadB [Burkholderia sp. 383]
Length = 326
Score = 58.0 bits (139), Expect = 2e-06, Method: Composition-based stats.
Identities = 28/161 (17%), Positives = 56/161 (34%), Gaps = 5/161 (3%)
Query: 167 WISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTI 226
WI++ + +R+ I R P LD ++ V G S+ A + + +PL +
Sbjct: 140 WITSRISRRRLKIVRQLPSFLDGIVRLVTLGNSVPAAFQ---STLQTAEMPLRRCLDDVS 196
Query: 227 AELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLME 286
L A + + ++ L S RYG L + + R E
Sbjct: 197 RMLRSGVEIDRAMLHVAHTYRIREFELVGAVLRLSVRYGGRADVMLDRMSTFMRDLEHAE 256
Query: 287 AEKKAASLGPKLTVPMIIFFLPVL--ILVIIGPAILSIIDT 325
E A S +++ ++ + ++ P + +
Sbjct: 257 RELSAMSAETRMSAWVLALMPIAVGSFVIATSPHYFTAMWN 297
>gi|297560196|ref|YP_003679170.1| type II secretion system F domain protein [Nocardiopsis
dassonvillei subsp. dassonvillei DSM 43111]
gi|296844644|gb|ADH66664.1| Type II secretion system F domain protein [Nocardiopsis
dassonvillei subsp. dassonvillei DSM 43111]
Length = 297
Score = 58.0 bits (139), Expect = 2e-06, Method: Composition-based stats.
Identities = 36/195 (18%), Positives = 73/195 (37%), Gaps = 3/195 (1%)
Query: 110 EYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVG-FCAPSVWI 168
E S L + ++ L L + + P V ++ +G + AP + +
Sbjct: 83 ERSPESYLAEKFTSLLLGLALPPLLGSIFALAGIRPSATVAAVVWVLFVLGTWSAPDMSL 142
Query: 169 SNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAE 228
+ KR+ ++RA DL+++ + G ++ AL G ++ E L
Sbjct: 143 RDEANKRREQMRRALASFADLVVVSLAGGAGVNGALADAGAAGNGWAMARIRESLRQATL 202
Query: 229 LSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAE 288
+ + A + R +L + G I SL R++ L E +
Sbjct: 203 MR--QSPWTALRDLGERYDTPEFAELAASLQLAGADGARIRSSLAAKAKTLRTQFLAEMD 260
Query: 289 KKAASLGPKLTVPMI 303
+A S ++++P+I
Sbjct: 261 AEAQSATERMSLPVI 275
>gi|88604391|ref|YP_504569.1| type II secretion system protein [Methanospirillum hungatei JF-1]
gi|88189853|gb|ABD42850.1| type II secretion system protein [Methanospirillum hungatei JF-1]
Length = 329
Score = 58.0 bits (139), Expect = 2e-06, Method: Composition-based stats.
Identities = 31/214 (14%), Positives = 81/214 (37%), Gaps = 4/214 (1%)
Query: 116 LLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKR 175
+L V + ++ I+G+ + + + + + P L +R
Sbjct: 52 ILYVSVPAGLLVFIIGLSMVIQQGGPEAILTNSFIDDIAVFTTIIIVGPLAITDLLEGRR 111
Query: 176 QSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNR 235
SSI+ A P+ L ESG+++ A+ V++ + L+ + +S+
Sbjct: 112 ISSIEVALPNFFRDLAGMHESGMTLPGAIHLVSQ---AEYGALTPHIRQLDQRISWNFAF 168
Query: 236 QVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLG 295
A + V + + ++ G I + LR ++ +M+ ++K +
Sbjct: 169 IDAIRQLGKEIPIPLVERSVDLVARASDAGGDIVEVLRAAGKDSAEYVVMKTDRKNN-MF 227
Query: 296 PKLTVPMIIFFLPVLILVIIGPAILSIIDTMKDH 329
+ + + F + + +++I+ + L + +
Sbjct: 228 IYVIIILASFAVFLFVVMILVSSFLKTMADLGAE 261
>gi|323486497|ref|ZP_08091820.1| hypothetical protein HMPREF9474_03571 [Clostridium symbiosum
WAL-14163]
gi|323400200|gb|EGA92575.1| hypothetical protein HMPREF9474_03571 [Clostridium symbiosum
WAL-14163]
Length = 404
Score = 58.0 bits (139), Expect = 2e-06, Method: Composition-based stats.
Identities = 23/155 (14%), Positives = 55/155 (35%), Gaps = 14/155 (9%)
Query: 173 QKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAE---- 228
+KR+ + + + L L++ + +G+ + +A ++ +D +
Sbjct: 248 KKRECQMMMDYSEILSRLVVFLGAGLPVRKAWAKIVKDYRRTEEKAGKRAAYEEMAAAYY 307
Query: 229 -LSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGT-SIGDSLRVLVSETRSERLME 286
+ A+ F NR ++ R L Q+ + G+ S+ L + +R
Sbjct: 308 LMQRGVPEIQAYSEFGNRCRVLPYRKLAGILEQNVKNGSKSLTPVLEAEMEAAFEQRKNL 367
Query: 287 AEKKAASLGPK--------LTVPMIIFFLPVLILV 313
A + K L + M++ +P +
Sbjct: 368 ARRLGEEASTKLLLPLFMMLLIVMVMITVPAFLAF 402
>gi|255324192|ref|ZP_05365314.1| putative membrane protein [Corynebacterium tuberculostearicum
SK141]
gi|255298708|gb|EET78003.1| putative membrane protein [Corynebacterium tuberculostearicum
SK141]
Length = 198
Score = 58.0 bits (139), Expect = 2e-06, Method: Composition-based stats.
Identities = 29/136 (21%), Positives = 58/136 (42%), Gaps = 6/136 (4%)
Query: 187 LDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRT 246
++L C+ +G+S+ A VA Q+ L A L Q A+ + +
Sbjct: 64 VELFAACLAAGLSVHGATTAVARTADAQTKEL---WETVAALLGVGVPAQSAWGHMKSHA 120
Query: 247 QMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFF 306
++ + QS G +I + + + R+E A +A G + +P+ + F
Sbjct: 121 GLEDLAQLVIMSGQS---GATIAAGCQRICTSLRAEASAHATAQAERAGVFIALPLAVCF 177
Query: 307 LPVLILVIIGPAILSI 322
LP I++ + P ++S+
Sbjct: 178 LPAFIVLGLAPVVISL 193
>gi|325275752|ref|ZP_08141630.1| type II secretion system protein [Pseudomonas sp. TJI-51]
gi|324099112|gb|EGB97080.1| type II secretion system protein [Pseudomonas sp. TJI-51]
Length = 293
Score = 58.0 bits (139), Expect = 2e-06, Method: Composition-based stats.
Identities = 26/164 (15%), Positives = 60/164 (36%), Gaps = 8/164 (4%)
Query: 149 RVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVA 208
+ + + + + IS ++ + P LD + +++G +++ A V
Sbjct: 93 ALMLLTGLPAIAYLL----ISWQSRRHMRHVVEQLPGLLDYSVRSLKAGRTLNDA---VL 145
Query: 209 EDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSI 268
I PL + + + A Q D +R L + R+G +
Sbjct: 146 GAIDSSREPLRTTLARVRRNVQLGVPLEDAMTELAELHQQDELRLFALGLRINQRHGGNA 205
Query: 269 GDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLIL 312
+ + L+ R + KA + ++T +I+ LP+ ++
Sbjct: 206 SELMENLIKLIREREQGARQLKAMTGETRITA-IILGALPLAMV 248
>gi|160897512|ref|YP_001563094.1| type II secretion system protein [Delftia acidovorans SPH-1]
gi|160363096|gb|ABX34709.1| type II secretion system protein [Delftia acidovorans SPH-1]
Length = 320
Score = 58.0 bits (139), Expect = 2e-06, Method: Composition-based stats.
Identities = 35/186 (18%), Positives = 66/186 (35%), Gaps = 4/186 (2%)
Query: 130 LGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDL 189
L + I G L Q A +++ + + I KR+ + + P LD
Sbjct: 97 LALFAITGLVLALLATSQAGAAAGLVVAVLYAVVLAFGIWRRQAKRRERLLQQLPGFLDN 156
Query: 190 LLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMD 249
++ + G S A + + PL + + A LS P+ A ++
Sbjct: 157 MVRLISIGNSPHAAFQMA---LNNVPDPLGDALQQAAAMLSASPDLGQAMGQLERNWRLP 213
Query: 250 CVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPV 309
S RYG L + + R + E E A S +++ ++ LP+
Sbjct: 214 EFGLLAAVFRMSVRYGGRADLVLERVSAYIRDRQSAERELHALSSEIRMSA-WVLALLPL 272
Query: 310 LILVII 315
++ +I
Sbjct: 273 VVGALI 278
>gi|33601082|ref|NP_888642.1| hypothetical protein BB2099 [Bordetella bronchiseptica RB50]
gi|33575517|emb|CAE32595.1| putative membrane protein [Bordetella bronchiseptica RB50]
Length = 281
Score = 58.0 bits (139), Expect = 2e-06, Method: Composition-based stats.
Identities = 25/133 (18%), Positives = 54/133 (40%), Gaps = 4/133 (3%)
Query: 184 PDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFY 243
P AL + + +G I ALR++ E PL++E L + E + A
Sbjct: 111 PGALVAMACALRAGAGIAAALRQLVEHGEA---PLAQEFGLLLREQRMGVSFDAALARLA 167
Query: 244 NRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMI 303
R + + AL + G ++ ++L + + ++ +A ++ I
Sbjct: 168 RRVSFESMALVAAALRVAAHTGGNLAETLEGIAQTVSARLQLQDRVRALCAQGRMQA-WI 226
Query: 304 IFFLPVLILVIIG 316
+ LP +++ ++G
Sbjct: 227 VGALPPVLMGVLG 239
>gi|255316490|ref|ZP_05358073.1| hypothetical protein CdifQCD-7_19177 [Clostridium difficile
QCD-76w55]
Length = 317
Score = 58.0 bits (139), Expect = 2e-06, Method: Composition-based stats.
Identities = 38/292 (13%), Positives = 105/292 (35%), Gaps = 31/292 (10%)
Query: 27 LIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKK 86
+++ ++ L + + VA + + ++ + + R+ D + +K
Sbjct: 5 VLFTIITLLLYI-AIALVLSKVANKNKEIKIKSRFGNKY------FRSSDVSVKKQIEEK 57
Query: 87 LNLKAILVDE-NIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYP 145
++ +A + + + AG+ Y V+ L + I ++ +I +
Sbjct: 58 MSQRASIKKKYKVETTCLQAGYNINY--GEYSVICLAMAISLPLIMMILL---------- 105
Query: 146 FQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALR 205
+ I+ ++G+ P + L KR + ++ + +++ + +I ++L
Sbjct: 106 --KNIILAIVFIFIGYSVPWQFFKTLSNKRVTKMESQIGSFIRIIIERYKINKNISKSLV 163
Query: 206 RVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNA-----TQALIQ 260
D G S PL E+ ++ ++ + + RT ++ +++
Sbjct: 164 ETLPDFQG-SEPLYSELKKSVVDIDLGIPIEEVLSSLARRTGSKYLKLFSNYYEVSSMLS 222
Query: 261 SDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLIL 312
S I + + R + ++ + + M+ PVL+L
Sbjct: 223 SQESKIKILTTSFNQYEDNRIIKRDLRKEIMG--PVRESYIMVFAI-PVLML 271
>gi|169834895|ref|YP_001715935.1| type II secretion system protein F [Clostridium botulinum A3 str.
Loch Maree]
gi|169409002|gb|ACA57412.1| bacterial type II secretion system protein F domain [Clostridium
botulinum A3 str. Loch Maree]
Length = 250
Score = 58.0 bits (139), Expect = 2e-06, Method: Composition-based stats.
Identities = 34/202 (16%), Positives = 80/202 (39%), Gaps = 8/202 (3%)
Query: 125 IIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKR--A 182
+ ++ GI+ I L + +++ + A I + + K + S +
Sbjct: 51 FVAIVWGILSIILLLAFLNRSNFKALIILLIGTNILLYAK---IKDPIDKYKESFLKDNE 107
Query: 183 WPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENF 242
P L+ L+ ++ G+ + L ++ + G + L + L + +++ + A
Sbjct: 108 LPAVLETLIQGLQIGMPVYSILLYISNNKKGNTANL---INLCVTKVNSGMDINKALREV 164
Query: 243 YNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPM 302
++ D + ++DR ++ L L + ER+ + A L L PM
Sbjct: 165 AEKSLNDYFLRMALIIEKTDRSVMNLDKQLEYLQQDMEEERINIKTEHADKLDNALFFPM 224
Query: 303 IIFFLPVLILVIIGPAILSIID 324
+I + LI++I+ P + +
Sbjct: 225 LIGYFIPLIIMILVPLLRQMTK 246
>gi|119716452|ref|YP_923417.1| type II secretion system protein [Nocardioides sp. JS614]
gi|119537113|gb|ABL81730.1| type II secretion system protein [Nocardioides sp. JS614]
Length = 303
Score = 58.0 bits (139), Expect = 2e-06, Method: Composition-based stats.
Identities = 39/215 (18%), Positives = 80/215 (37%), Gaps = 12/215 (5%)
Query: 114 NILLVVRLVVPIIFLILG-IIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLV 172
++V + LI+ ++ F L PF + + + + + P+ ++
Sbjct: 95 TRFYGEKVVWAALGLIMPPLLAAFFTLIGLPLPFAIPTLGSLALAALFWFMPNYNAADDA 154
Query: 173 QKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFL 232
+K + RA +D++ V G S QALR AE +EL
Sbjct: 155 KKARIEFSRALGAYIDMVATGVRDGSSGQQALRSAAEVGDK------WVFKRIESELRRA 208
Query: 233 PNRQVA----FENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAE 288
A + + + + + QS + G I ++LR + RS L
Sbjct: 209 RYMTRAPWDSLHGLADELAVPELDDLADIMQQSGQDGAQIYNNLRARAAALRSAMLSAEV 268
Query: 289 KKAASLGPKLTVPMIIFFLPVLILVIIGPAILSII 323
KA + ++ +P + + V + +++ P++L
Sbjct: 269 GKANATSERMYIPASLLGI-VFMAILVTPSLLRFT 302
>gi|20089131|ref|NP_615206.1| integral membrane protein [Methanosarcina acetivorans C2A]
gi|19913998|gb|AAM03686.1| integral membrane protein [Methanosarcina acetivorans C2A]
Length = 662
Score = 58.0 bits (139), Expect = 2e-06, Method: Composition-based stats.
Identities = 34/163 (20%), Positives = 70/163 (42%), Gaps = 4/163 (2%)
Query: 154 ILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGG 213
++I V P + + R I PD L L +SGI + +L+ +AE G
Sbjct: 423 LVIFTVIALIPFIIFYEIRAWRMRKIDERMPDLLRNLSSMNDSGILLSNSLKIMAESKMG 482
Query: 214 QSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLR 273
LS+E+ +LS+ + A N + LI+++ + I + L
Sbjct: 483 I---LSKELKKLKEDLSWGNSTSRALMKLENNIRTATSSRVLHTLIKANESTSDIKNVLS 539
Query: 274 VLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIG 316
+ + +SE ++ E++++ + + + FF+ + I+ I+
Sbjct: 540 ITAEQVKSEERLK-EERSSEMVVYVVTIYVAFFVFLFIVYILA 581
Score = 46.8 bits (110), Expect = 0.004, Method: Composition-based stats.
Identities = 24/180 (13%), Positives = 62/180 (34%), Gaps = 7/180 (3%)
Query: 136 FGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVE 195
+ Y + L + + +++ + + P R + I ++ A+ + +
Sbjct: 93 YLYLLAILVALLLFIISFLVVFGMIYIYP----YFQADIRNACIDKSMLPAVTYMYALTK 148
Query: 196 SGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSF-LPNRQVAFENFYNRTQMDCVRNA 254
G+SI R ++ +EE+ + ++ + + A + RT + ++
Sbjct: 149 GGMSIYDVFRSLSSYTHIFGTS-AEEISYIVRDMDYLGKDFITALKEAKERTPSERFKDF 207
Query: 255 TQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVI 314
LI GT I + ++ + + + L V + F L ++
Sbjct: 208 VDGLILVSSGGT-ITEYMKNKSEQYQEMADLANRNLLKRLDVLAEVYVTAFVAGPLFIMT 266
>gi|284989774|ref|YP_003408328.1| Type II secretion system F domain-containing protein
[Geodermatophilus obscurus DSM 43160]
gi|284063019|gb|ADB73957.1| Type II secretion system F domain protein [Geodermatophilus
obscurus DSM 43160]
Length = 285
Score = 58.0 bits (139), Expect = 2e-06, Method: Composition-based stats.
Identities = 36/191 (18%), Positives = 67/191 (35%), Gaps = 17/191 (8%)
Query: 99 VNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGY 158
L AAG + L +++ + ++ ++ ++ V +L G
Sbjct: 38 QQHLAAAGLTGINAAQ-LTALQVGLGLLATVVVLL------------TTGTVTVSLLFGA 84
Query: 159 VGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPL 218
P V + L KR++ ++ WP+ +D L V +G+S+ +AL ++ P
Sbjct: 85 FAAALPVVQVRRLAVKRRADLREVWPEVVDNLASAVRAGLSLPEALSALSTRGPEVLRP- 143
Query: 219 SEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTS-IGDSLRVLVS 277
AE + + + L + G S +G LR L S
Sbjct: 144 --PFARFAAEYRSSGRFGNGLDRLKDDLADPVGDRIVETLRVAREVGGSDLGRVLRTLSS 201
Query: 278 ETRSERLMEAE 288
R + AE
Sbjct: 202 FLREDARARAE 212
>gi|170696832|ref|ZP_02887932.1| type II secretion system protein [Burkholderia graminis C4D1M]
gi|170138260|gb|EDT06488.1| type II secretion system protein [Burkholderia graminis C4D1M]
Length = 356
Score = 57.6 bits (138), Expect = 2e-06, Method: Composition-based stats.
Identities = 34/163 (20%), Positives = 54/163 (33%), Gaps = 7/163 (4%)
Query: 147 QLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRR 206
L G +L V +S +R+ +I R P LD ++ + G S+ A +
Sbjct: 152 PLAAGVTLLGCAVFLY---FVMSMRASRRRQAIVRQLPSFLDGIVRLITLGNSVPAAFQ- 207
Query: 207 VAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGT 266
+ PL E + L A + + L S +YG
Sbjct: 208 --ASLQTTEAPLRECLDHVSRMLRSGVEIDRALSHVAVLYGARELELVGAVLRLSVKYGG 265
Query: 267 SIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPV 309
L + S R E E A S +L+ ++ LPV
Sbjct: 266 RADVMLDRMSSFMRDLEQAERELVAMSSETRLSS-WVLGMLPV 307
>gi|325288256|ref|YP_004264437.1| hypothetical protein Sgly_0062 [Syntrophobotulus glycolicus DSM
8271]
gi|324963657|gb|ADY54436.1| hypothetical protein Sgly_0062 [Syntrophobotulus glycolicus DSM
8271]
Length = 290
Score = 57.6 bits (138), Expect = 2e-06, Method: Composition-based stats.
Identities = 44/308 (14%), Positives = 113/308 (36%), Gaps = 25/308 (8%)
Query: 18 ITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDS 77
+T + +F ++ + + + + L R+ ++A ++ +L + + + + LR
Sbjct: 1 MTIYIFLFGVLLSAGLFFITADLL--RLPTLATQKAMLSAGKQAKAKPKATDALLRNAAV 58
Query: 78 KSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFG 137
+ + + + N L AAG L + + + I I+ + +
Sbjct: 59 Q-----LSRYLRMDEYKKSRMENVLSAAGLSDSPELFTAMAIVKAMSIALCIIPCLIV-- 111
Query: 138 YDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESG 197
L V+ + + + ++ I++ P + + +++
Sbjct: 112 --------LPLLTPIVLFAAVLVYFKEIRKADEALAAKRGKIEQELPRFVATITQELKAS 163
Query: 198 ISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQA 257
+ L + S E+ + A++ + + A F +R + + T+
Sbjct: 164 RDV---LSMLENFKRNAGEDFSAELDILTADMRS-SSYEAALTRFESRFNSPMLSDITRG 219
Query: 258 LIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKL---TVPMIIFFLPVLILVI 314
LI R G G ++L + + L + +A + PK+ + M++ FL + +I
Sbjct: 220 LIGVLR-GDDGGMYFQMLAHDMKQLELQRLKAQAMKIPPKIRVFSFAMLMCFLMTYMAII 278
Query: 315 IGPAILSI 322
+ I S+
Sbjct: 279 VYEIITSL 286
>gi|292655314|ref|YP_003535211.1| type IV pilus biogenesis complex membrane subunit [Haloferax
volcanii DS2]
gi|291371306|gb|ADE03533.1| type IV pilus biogenesis complex membrane subunit [Haloferax
volcanii DS2]
Length = 680
Score = 57.6 bits (138), Expect = 2e-06, Method: Composition-based stats.
Identities = 24/216 (11%), Positives = 82/216 (37%), Gaps = 13/216 (6%)
Query: 107 FRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSV 166
R + + + + L ++ + + + + ++ F P
Sbjct: 383 LRRPHLFFKRHPLFTLALTVPAALALLGVSVAGGAAPTTWDGMIANPVWGTFIWFYVPVY 442
Query: 167 WISNLVQKR-------QSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLS 219
++ + +++I D L L ++G ++ ++++ V++ S L+
Sbjct: 443 LVAVPLTAFHEWNVHSRAAITGKLSDNLRKLSSANDTGQTLLESIKTVSD---TSSGKLA 499
Query: 220 EEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSET 279
+E + A++ + + + A F N+ + + + + ++ + I + L +
Sbjct: 500 DEFEVMHAKVHYGMSLKEALVEFNNKYHIPRLARTVKLITKAQEASSQITEVLTTAAQAS 559
Query: 280 RSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVII 315
++ +E ++ + ++ V +I+ L+ V+
Sbjct: 560 ENQDDIE-RERISR--TRMQVAIILMTYVTLLAVMA 592
Score = 39.1 bits (90), Expect = 0.95, Method: Composition-based stats.
Identities = 37/231 (16%), Positives = 72/231 (31%), Gaps = 46/231 (19%)
Query: 96 ENIVNKLRAAGFRSEYSLNILLVVRLVVPII---------FLILGIIWIFGYDKLLEYPF 146
+I KL+ A R ++ + L L V ++ L+ ++ G
Sbjct: 39 SDIETKLQQA--RMPDTVELYLSRALAVGVLVGLVSWLVGMLVGYGVFALGLVSADSVSL 96
Query: 147 QLRVG---------------AVILIGYV--------GFCAPSVWISNLVQKRQSSIKRAW 183
+ VG AV++ G V GF + R+ I
Sbjct: 97 GIPVGSEATADTLRSLAMPAAVVVSGLVFGSLGFAGGFGTLVAIPYSTASARKREINMLL 156
Query: 184 PDALDLLLICVESGIS---IDQALRRVAEDIGGQSVPLSEEMLLTIAELS-FLPNRQVAF 239
DA+ + G++ I +A+ R +S E + E F + + A
Sbjct: 157 SDAVSFMYALSVGGLNQLEILEAMARA----EDTYGEVSREFQSIVQETEYFGTDYRNAI 212
Query: 240 ENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKK 290
T D + ++ G + L + + + L A+++
Sbjct: 213 RQQALLTPSDELSQFLTDMLSIVNSGGDMQGFL----DDKKDKHLRTAKQQ 259
>gi|218132582|ref|ZP_03461386.1| hypothetical protein BACPEC_00441 [Bacteroides pectinophilus ATCC
43243]
gi|217992308|gb|EEC58311.1| hypothetical protein BACPEC_00441 [Bacteroides pectinophilus ATCC
43243]
Length = 248
Score = 57.6 bits (138), Expect = 2e-06, Method: Composition-based stats.
Identities = 34/185 (18%), Positives = 72/185 (38%), Gaps = 10/185 (5%)
Query: 140 KLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQ------SSIKRAWPDALDLLLIC 193
K L P + + V P W+ +QKR+ + A+ D + +
Sbjct: 22 KSLFIPVAVGIIFYNSFLVVILLLPLCWVYVRIQKRELAKREDERLAGAFKDGIIAVSFS 81
Query: 194 VESGISIDQALRRVAEDIG---GQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDC 250
+ G SI+ A R +++ G +++E + ++ N + E+F + ++
Sbjct: 82 LNVGYSIENAFREAYKEMQMLYGSESRIAKEFRIICNRMAQNENIEDILEDFAAESGVED 141
Query: 251 VRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVL 310
+ Q + R G + +R S R + + AE + + M++ F+P
Sbjct: 142 ILYFAQVFRYAKRSGGDLMSIIRNTASVIRDKNEV-AEDIRTIISGRRMEQMVMNFVPFG 200
Query: 311 ILVII 315
I+V +
Sbjct: 201 IIVYL 205
>gi|254429908|ref|ZP_05043615.1| Bacterial type II secretion system protein F domain [Alcanivorax
sp. DG881]
gi|196196077|gb|EDX91036.1| Bacterial type II secretion system protein F domain [Alcanivorax
sp. DG881]
Length = 306
Score = 57.6 bits (138), Expect = 2e-06, Method: Composition-based stats.
Identities = 49/297 (16%), Positives = 110/297 (37%), Gaps = 41/297 (13%)
Query: 19 TTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSK 78
++ I AV+ L R +S+ +R R QQ T L ++ +R+ +
Sbjct: 6 LLGMAQVLGIIAVLTVLLQLVWFRYRQRSLVSDRVRQRLQQRTELGQELGQTRVVSGP-- 63
Query: 79 SLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGY 138
+ L A R + L+ + + V + ++ +
Sbjct: 64 -------------------LERLLLRADIRLSRTQLTLMGIVIFVMLALVLASSGF---- 100
Query: 139 DKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGI 198
+ A ++ ++ W Q+++ +I + P +D L + +G
Sbjct: 101 -----------IAAAVVALFIMASLWLYW-RFRFQQQRRAIFESLPGIMDSTLRYMGAGR 148
Query: 199 SIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQAL 258
S++ +L +D PL+ + + + F++F ++ + + AL
Sbjct: 149 SLEASLLESFQDAPPVFQPLTFRLRSA---VESGRDYTGLFDDFARLYRVPSLVLVSIAL 205
Query: 259 IQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVII 315
S R+G+SI L+ + + RS++ + E A++ + T LP+ + V +
Sbjct: 206 RTSARFGSSIRPVLQQVANSLRSQQELRREFLASTAETRFTAG-AFTLLPLGMAVYM 261
>gi|118431779|ref|NP_148458.2| hypothetical protein APE_2207.1 [Aeropyrum pernix K1]
gi|116063101|dbj|BAA81219.2| hypothetical protein [Aeropyrum pernix K1]
Length = 332
Score = 57.6 bits (138), Expect = 2e-06, Method: Composition-based stats.
Identities = 37/225 (16%), Positives = 74/225 (32%), Gaps = 11/225 (4%)
Query: 97 NIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIF--GYDKLLEYPFQLRVGAVI 154
+ L+ AG + + + L++ +LG+ + F + V +
Sbjct: 56 ELERNLKIAGI--QVYPVMYMSRLLLLSTAVFLLGVYFSFWTLLSGFSIIVKAIVVLIAL 113
Query: 155 LIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQ 214
++ F A ++ S R+ I+ P L I G+ + + RVA
Sbjct: 114 SAPFMVFAAGLMYPSLKTGSRKEGIETELPFFAAYLSIMGRGGVPVSLVIDRVAS--LKI 171
Query: 215 SVPLSEEMLLTIAELS-FLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLR 273
L EE + ++ N A E + R+ + + G+ + L
Sbjct: 172 FKALREEAEMIRTKIRLLGKNPLDALEEHVLDSPSSVFRDFILGYTTAVKVGSDVIHYLE 231
Query: 274 VLVSETRSER----LMEAEKKAASLGPKLTVPMIIFFLPVLILVI 314
+ + R + AE+ L L V +I + + I
Sbjct: 232 IRTQDLFERRLNDIRLLAERMTLYLEIYLVVAVIATIVFYIFFTI 276
>gi|260365460|ref|ZP_05777997.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus K5030]
gi|260877525|ref|ZP_05889880.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus AN-5034]
gi|260897534|ref|ZP_05906030.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus Peru-466]
gi|260901736|ref|ZP_05910131.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus AQ4037]
gi|308087149|gb|EFO36844.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus Peru-466]
gi|308090878|gb|EFO40573.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus AN-5034]
gi|308108899|gb|EFO46439.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus AQ4037]
gi|308114317|gb|EFO51857.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus K5030]
Length = 304
Score = 57.6 bits (138), Expect = 3e-06, Method: Composition-based stats.
Identities = 35/190 (18%), Positives = 65/190 (34%), Gaps = 10/190 (5%)
Query: 126 IFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPD 185
F I D + + + A+ I +V F +S + +R K +PD
Sbjct: 82 FFAASSIAVYCVNDWFFMFEYWKVLLALEPILFVMFILK---LSGIQAQR---FKDNFPD 135
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
AL++L + SG SI A V + + EE L +
Sbjct: 136 ALNILSGALSSGQSIVHAFEYVGTQLDN---EVGEEFKKMSERLLIGEDPDDVLARSAAS 192
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
+ + G + D + + R +E +K A + + + +I
Sbjct: 193 FPYVEYFFFAATIRINLSRGGQLKDVINRINRIMFEARAIEKKKNALTSEARASAKIIA- 251
Query: 306 FLPVLILVII 315
LPV+ ++I+
Sbjct: 252 ALPVIFIMIL 261
>gi|227876610|ref|ZP_03994720.1| conserved hypothetical protein [Mobiluncus mulieris ATCC 35243]
gi|269976144|ref|ZP_06183140.1| putative type II secretion system protein [Mobiluncus mulieris
28-1]
gi|306817559|ref|ZP_07451302.1| type II secretion system protein [Mobiluncus mulieris ATCC 35239]
gi|307699933|ref|ZP_07636984.1| type II secretion system F domain protein [Mobiluncus mulieris
FB024-16]
gi|227842811|gb|EEJ53010.1| conserved hypothetical protein [Mobiluncus mulieris ATCC 35243]
gi|269935473|gb|EEZ92011.1| putative type II secretion system protein [Mobiluncus mulieris
28-1]
gi|304649601|gb|EFM46883.1| type II secretion system protein [Mobiluncus mulieris ATCC 35239]
gi|307614971|gb|EFN94189.1| type II secretion system F domain protein [Mobiluncus mulieris
FB024-16]
Length = 386
Score = 57.6 bits (138), Expect = 3e-06, Method: Composition-based stats.
Identities = 44/235 (18%), Positives = 90/235 (38%), Gaps = 13/235 (5%)
Query: 94 VDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAV 153
V + I +L A R + RL+ + L + G D L +
Sbjct: 160 VADGIAAQLEAGAKRHAAQVGPRATARLLGVLPLAALVMASFIGVDVLGMALSGGLNTGI 219
Query: 154 ILIGYVGFCAPSVWISNLVQKRQSSIKRAW--PDALDLLLICVESGISIDQALRRVAEDI 211
++G V ++W ++++ + A+D++ C E+G+S+ +L+ V+
Sbjct: 220 FVVGAVLMVVGNLWSHAMIRRAMNPGVSGLDPTLAMDIIAACQENGVSLTASLQAVS--A 277
Query: 212 GGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDS 271
L+ + L + + A+ + + + + L + G S
Sbjct: 278 ASSETDLA----VVARMLLLGASWEEAWSDSDGKWE-----QLSDVLQPAWEEGASPVPL 328
Query: 272 LRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
L + TR+ EA A LG +L VP+ + LP + I P ++S ++ +
Sbjct: 329 LVRGAARTRAHLTHEAVNAAEKLGVRLVVPLGVCLLPAFFALGIVPVVVSTLEGL 383
>gi|317498624|ref|ZP_07956917.1| hypothetical protein HMPREF0996_01899 [Lachnospiraceae bacterium
5_1_63FAA]
gi|316894111|gb|EFV16300.1| hypothetical protein HMPREF0996_01899 [Lachnospiraceae bacterium
5_1_63FAA]
Length = 252
Score = 57.6 bits (138), Expect = 3e-06, Method: Composition-based stats.
Identities = 32/202 (15%), Positives = 79/202 (39%), Gaps = 12/202 (5%)
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
L+ GI +I ++ + F R+ IL+ F + V + + +++ + + +
Sbjct: 25 LVKGICYIV----MIAWLFFDRIAFAILLIPYLFVFMKQQRIHKVHREKKKLRKEFREMM 80
Query: 188 DLLLICVESGISIDQALRRVAE--DIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
+ + +G SI+ AL+ ++ + L++E+ L I +L +
Sbjct: 81 ISIGNSLSAGYSIENALKTAKNDLEMYEEHSLLAKELQLLINKLKMNEPVDNLLFDMAEH 140
Query: 246 TQMDCVRNATQALIQSDRYGTSIGD----SLRVLVSETRSERLMEAEKKAASLGPKLTVP 301
++ Q + + + G ++ + ++ L +++ + A + K+
Sbjct: 141 VGLEEFYQFAQVISIAKKSGGNLIEITENTIEHLSQAIQTKEEIHTMIAAKQMEKKIMSV 200
Query: 302 MIIFFLPVLILVIIGPAILSII 323
M F L L + I P I+
Sbjct: 201 MPYFIL--LYVRIANPGYFDIL 220
>gi|311741045|ref|ZP_07714870.1| membrane protein [Corynebacterium pseudogenitalium ATCC 33035]
gi|311303847|gb|EFQ79925.1| membrane protein [Corynebacterium pseudogenitalium ATCC 33035]
Length = 198
Score = 57.2 bits (137), Expect = 3e-06, Method: Composition-based stats.
Identities = 29/136 (21%), Positives = 56/136 (41%), Gaps = 6/136 (4%)
Query: 187 LDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRT 246
++L C+ +G+S+ A VA Q+ L A L Q A+ +
Sbjct: 64 VELFAACLAAGLSVHGATTAVARTADAQTKEL---WETVAALLGVGVPAQSAWGHMKGHA 120
Query: 247 QMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFF 306
++ + QS G +I + + R+E A +A G + +P+ + F
Sbjct: 121 GLEDLAQLVIMSGQS---GATIAAGCHRICTSLRAEASAHATAQAERAGVFIALPLAVCF 177
Query: 307 LPVLILVIIGPAILSI 322
LP I++ + P ++S+
Sbjct: 178 LPAFIVLGLAPVVISL 193
>gi|160940639|ref|ZP_02087982.1| hypothetical protein CLOBOL_05533 [Clostridium bolteae ATCC
BAA-613]
gi|158436374|gb|EDP14141.1| hypothetical protein CLOBOL_05533 [Clostridium bolteae ATCC
BAA-613]
Length = 292
Score = 57.2 bits (137), Expect = 3e-06, Method: Composition-based stats.
Identities = 35/191 (18%), Positives = 77/191 (40%), Gaps = 10/191 (5%)
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
L + + L L V+ + + + + + V+KR+ I++ P
Sbjct: 96 AFLSALAVAFLSLPLFLIMPLLGFLVLGLSILMWFSTYYGAFDYVKKRKVLIEQELP--- 152
Query: 188 DLLLICVESGISIDQ-ALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRT 246
L + ++ ++ D+ L+ + L +E+ TIA++ N + A F NR
Sbjct: 153 -RLAVSIQQSLANDRDVLKLLVSYRRIAGPELGKELDTTIADMKTG-NYENALLRFQNRI 210
Query: 247 QMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKL---TVPMI 303
+ + + LI + R G R+L + R +K+AA ++ ++ M+
Sbjct: 211 GSTMLSDIVRGLIGTLR-GDDQQMYFRMLAFDMRQMEQSNLKKEAAKRPKQMQKYSMMML 269
Query: 304 IFFLPVLILVI 314
L + ++V+
Sbjct: 270 FCILLIYVVVL 280
>gi|257139286|ref|ZP_05587548.1| hypothetical protein BthaA_08789 [Burkholderia thailandensis E264]
Length = 301
Score = 57.2 bits (137), Expect = 3e-06, Method: Composition-based stats.
Identities = 35/180 (19%), Positives = 56/180 (31%), Gaps = 12/180 (6%)
Query: 121 LVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIK 180
LV +W LL GA +++ W+++ +QKR+ I
Sbjct: 113 LVALGAVTAFATLWAGLRGGLLAAVAAFVAGATLVV---------FWLASRMQKRRLRIV 163
Query: 181 RAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFE 240
R P LD ++ V G S+ A + + PL + L A
Sbjct: 164 RQLPSFLDGIVRLVTLGNSVPAAFQ---ATLQTTDAPLRGCLDHVSRMLRSGVEIDRAMV 220
Query: 241 NFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV 300
++ L S +YG L + R E E A S +L+
Sbjct: 221 YVAALYRIKEFELVGSVLRLSVKYGGRADVMLDRMAVFMRDLEQAERELVAMSAETRLSA 280
>gi|289582786|ref|YP_003481252.1| type II secretion system protein F [Natrialba magadii ATCC 43099]
gi|289532339|gb|ADD06690.1| Type II secretion system F domain protein [Natrialba magadii ATCC
43099]
Length = 684
Score = 57.2 bits (137), Expect = 3e-06, Method: Composition-based stats.
Identities = 34/206 (16%), Positives = 83/206 (40%), Gaps = 10/206 (4%)
Query: 114 NILLVVRLVVPIIFLILGIIWIFGYDKL-LEYPFQLRVGAVILIGYVGFCA---PSVWIS 169
N L + + VP +++ + G L + +L Y+ F P
Sbjct: 396 NPLYTLAVTVPTALVVVTTAMMTGAAPLSWSALLNNVIWGTVLYVYIPFYIIAIPLSIFR 455
Query: 170 NLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAEL 229
+ ++++ + + L L ++G+++ ++ + VA+ + L+ E L ++
Sbjct: 456 EWNVRHRNTVVKTLSEDLRKLSSANDTGLTLLESFQSVAD---TTNGKLAREFELMHTKV 512
Query: 230 SFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEK 289
++ + + A F N+ + + T+ + ++ I D LR S + + +E E+
Sbjct: 513 NYGTSLKAALIEFNNKYHIPRLARTTRLITEAQEASNQITDVLRTAASASENHDDIERER 572
Query: 290 KAASLGPKLTVPMIIFFLPVLILVII 315
++ V +II ++ VI
Sbjct: 573 ---KSRTRMQVVIIIMTFLTVLAVIA 595
Score = 42.6 bits (99), Expect = 0.084, Method: Composition-based stats.
Identities = 43/270 (15%), Positives = 99/270 (36%), Gaps = 24/270 (8%)
Query: 72 LRTRDSKSLRNFVKKLNLKAILVD-ENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLIL 130
L + DS+ +++ KL + E +++ GF S +L ++ L + +
Sbjct: 32 LFSEDSEFVKDVETKLTQARMTDTVEMYLSRSLGIGFISGLAL---WLIGLTLGYLLFAT 88
Query: 131 GIIWI-------FGYDKLLEYPFQLRVGAVILI---------GYVGFCAPSVWISNLVQK 174
G+I + G + LL LR+ A++ + +GF + +
Sbjct: 89 GLIAVDVIIGFPVGNETLLAIIEALRIPALVFVTGLIFGTIGFALGFGSLVAIPYSRASA 148
Query: 175 RQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELS-FLP 233
R+ I D++ + G++ + + +A+ +++E + E F
Sbjct: 149 RKREINMLLTDSVSFMYALSVGGLNQLEIIEAMAQ-ADDTYGEVAKEFQSIVKETEYFDV 207
Query: 234 NRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAAS 293
+ + A N T D + ++ G + L + E E +
Sbjct: 208 DYRTAIRNQAIETPSDELSQFLTDMLSIVNSGGDMESFLEDKKEKHMRTAKQEQEITLET 267
Query: 294 LGPKLTVPMIIFFLPVLILVIIGPAILSII 323
L + M + P+L+++I+ ++ +I
Sbjct: 268 LELFGEMYMTLSLFPLLLIIIM--VVMQMI 295
>gi|260768629|ref|ZP_05877563.1| flp pilus assembly protein TadB [Vibrio furnissii CIP 102972]
gi|260616659|gb|EEX41844.1| flp pilus assembly protein TadB [Vibrio furnissii CIP 102972]
Length = 292
Score = 57.2 bits (137), Expect = 4e-06, Method: Composition-based stats.
Identities = 35/185 (18%), Positives = 70/185 (37%), Gaps = 12/185 (6%)
Query: 119 VRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSS 178
++ + + ++L + + +P L + +I+ +
Sbjct: 67 LKNTLLLGGIVLLSAMLASRFGPVAFPVTLVLSVLIVFATA---------QIRRNNIKLQ 117
Query: 179 IKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVA 238
+ + P ++ + ++ G+SI QA+ + A + PL + + I + Q A
Sbjct: 118 LVQQLPSFVEQVNRRIKVGLSIAQAVEQSAS---ATNAPLKDVLQRVIHRKAVGVELQDA 174
Query: 239 FENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKL 298
FE T + + RYG SI DSL LV R + L E K+ + ++
Sbjct: 175 FEKESVVTGVVAFHLLGSIFSINTRYGGSITDSLESLVKLLRQQDLSRRELKSITGETRI 234
Query: 299 TVPMI 303
T +I
Sbjct: 235 TAWVI 239
>gi|84494454|ref|ZP_00993573.1| hypothetical protein JNB_06649 [Janibacter sp. HTCC2649]
gi|84383947|gb|EAP99827.1| hypothetical protein JNB_06649 [Janibacter sp. HTCC2649]
Length = 289
Score = 57.2 bits (137), Expect = 4e-06, Method: Composition-based stats.
Identities = 32/192 (16%), Positives = 66/192 (34%), Gaps = 17/192 (8%)
Query: 98 IVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIG 157
+ ++L AG+ + +L+ ++FL + Y + G
Sbjct: 41 LRDELVQAGYPTVTPRALLVGCTAAFLLVFLFV-------------YAVVGVPAISLCFG 87
Query: 158 YVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVP 217
+ P + ++R++ ++ WPDA+D + V +G+S+ +A VA+
Sbjct: 88 LMAAWGPYALVRMRARQRRNRLRDLWPDAVDNITSAVRAGMSLPEA---VAQLGLRGPEE 144
Query: 218 LSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTS-IGDSLRVLV 276
L + + R ++L + G S +G LR L
Sbjct: 145 LRPAFQAFAQDYRITGRFHDCLDRLKERLSDPVADRLIESLRIAREVGGSDLGRLLRTLS 204
Query: 277 SETRSERLMEAE 288
R + +E
Sbjct: 205 VFLREDSRTRSE 216
>gi|256810975|ref|YP_003128344.1| Type II secretion system F domain protein [Methanocaldococcus
fervens AG86]
gi|256794175|gb|ACV24844.1| Type II secretion system F domain protein [Methanocaldococcus
fervens AG86]
Length = 299
Score = 57.2 bits (137), Expect = 4e-06, Method: Composition-based stats.
Identities = 33/203 (16%), Positives = 80/203 (39%), Gaps = 8/203 (3%)
Query: 125 IIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWP 184
I F+++ + L + V V L PS+ + +++ P
Sbjct: 33 IFFILVVTVLSIIVSLYLNMTLKSTVILVALYVGAALSLPSMMYEQKI----ETLENNIP 88
Query: 185 DALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLP-NRQVAFENFY 243
AL ++++ +ESG S+++AL V + +S+ I + + + A
Sbjct: 89 QALYIMILSLESGRSLNEALEEVVK---SNIKEVSDIFRKVIYLIEHQKISFEEAITVVS 145
Query: 244 NRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMI 303
+ + +I++ +YG + DSLR+L + + + + + +I
Sbjct: 146 TLYGSRVLMMLARIMIENRKYGGDLSDSLRILAKTLEDFKSYKRQLLSVTASGLAVGFII 205
Query: 304 IFFLPVLILVIIGPAILSIIDTM 326
+ + + ++G +L+I + +
Sbjct: 206 LCGVIPAVAGLLGAYLLTISNML 228
>gi|83719714|ref|YP_443056.1| hypothetical protein BTH_I2539 [Burkholderia thailandensis E264]
gi|83653539|gb|ABC37602.1| membrane protein, putative [Burkholderia thailandensis E264]
Length = 336
Score = 57.2 bits (137), Expect = 4e-06, Method: Composition-based stats.
Identities = 40/207 (19%), Positives = 66/207 (31%), Gaps = 16/207 (7%)
Query: 121 LVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIK 180
LV +W LL GA +++ W+++ +QKR+ I
Sbjct: 113 LVALGAVTAFATLWAGLRGGLLAAVAAFVAGATLVV---------FWLASRMQKRRLRIV 163
Query: 181 RAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFE 240
R P LD ++ V G S+ A + + PL + L A
Sbjct: 164 RQLPSFLDGIVRLVTLGNSVPAAFQ---ATLQTTDAPLRGCLDHVSRMLRSGVEIDRAMV 220
Query: 241 NFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV 300
++ L S +YG L + R E E A S +L+
Sbjct: 221 YVAALYRIKEFELVGSVLRLSVKYGGRADVMLDRMAVFMRDLEQAERELVAMSAETRLSA 280
Query: 301 PMIIFFLPV---LILVIIGPAILSIID 324
++ LPV ++ P S +
Sbjct: 281 -WVLGALPVGIGSFVIATNPKYFSAMW 306
>gi|206559897|ref|YP_002230661.1| flp type pilus assembly protein [Burkholderia cenocepacia J2315]
gi|198035938|emb|CAR51830.1| flp type pilus assembly protein [Burkholderia cenocepacia J2315]
Length = 326
Score = 56.8 bits (136), Expect = 4e-06, Method: Composition-based stats.
Identities = 29/165 (17%), Positives = 57/165 (34%), Gaps = 5/165 (3%)
Query: 162 CAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEE 221
+WI++ + +R+ I R P LD ++ V G S+ A + + +PL
Sbjct: 135 VLVVLWITSRISRRRLKIVRQLPSFLDGIVRLVTLGNSVPAAFQSA---LQTAEMPLRRC 191
Query: 222 MLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRS 281
+ L A + + ++ L S RYG L + + R
Sbjct: 192 LDDVSQMLRSGVEIDRAMLHIAHTYRIREFELVGAVLRLSVRYGGRADVMLDRMSTFMRD 251
Query: 282 ERLMEAEKKAASLGPKLTVPMIIFFLPVL--ILVIIGPAILSIID 324
E E A S +L+ ++ + ++ P + +
Sbjct: 252 LEQAERELSAMSAETRLSAWVLALLPIAVGSFVIATSPRYFTAMW 296
>gi|312883758|ref|ZP_07743477.1| Flp pilus assembly protein TadB, putative [Vibrio caribbenthicus
ATCC BAA-2122]
gi|309368507|gb|EFP96040.1| Flp pilus assembly protein TadB, putative [Vibrio caribbenthicus
ATCC BAA-2122]
Length = 302
Score = 56.8 bits (136), Expect = 4e-06, Method: Composition-based stats.
Identities = 27/128 (21%), Positives = 52/128 (40%), Gaps = 3/128 (2%)
Query: 170 NLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAEL 229
+++ +++ L L+ V +G+S+ QA+ +V E GG +S E +L
Sbjct: 116 MRKKQQIEEFEQSMVQVLGLISRAVSAGLSVPQAISQVTESQGGL---MSREFSRIEDQL 172
Query: 230 SFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEK 289
+ + A R R T AL+ + G + + L L R M+ +
Sbjct: 173 ALGHGMRYALNEACIRLPYKAFRYFTIALLLNQSNGGQLREILHSLSRTLHENRAMQKKV 232
Query: 290 KAASLGPK 297
K+ + P+
Sbjct: 233 KSLTSEPR 240
>gi|297526958|ref|YP_003668982.1| Type II secretion system F domain protein [Staphylothermus
hellenicus DSM 12710]
gi|297255874|gb|ADI32083.1| Type II secretion system F domain protein [Staphylothermus
hellenicus DSM 12710]
Length = 591
Score = 56.8 bits (136), Expect = 4e-06, Method: Composition-based stats.
Identities = 39/252 (15%), Positives = 94/252 (37%), Gaps = 9/252 (3%)
Query: 77 SKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIF 136
+ + + L + + N+ + +R +G + + + + I + + + +F
Sbjct: 4 WDWVYRYFEGLGKYILRMYPNLSSDIRRSGMHLYPEVYASFMAFMSILISGVTVVLTILF 63
Query: 137 GYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVES 196
+ + ++ I ++ + + + + R I+ +P L + V S
Sbjct: 64 A-----AMKMYIIIPFLVPIPFLAYIFLAYLPALIGSSRAGGIEGEFPYTTAYLSMMVMS 118
Query: 197 GISIDQALRRV--AEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNA 254
G+S A R+ A + ++ LS+ +L + L + AF RT R+
Sbjct: 119 GLSPYVAFERITHASKVFTKTAELSQRFILLVRVL--GRDPLTAFSMLAQRTPSPTARDL 176
Query: 255 TQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVI 314
+ + R G + D L SE ++ + A L L + + L ++ L +
Sbjct: 177 LMGYVTTVRAGGDVADYLNKKARLLFSELIVRMKIIADRLAGLLEAYLALVLLSLISLAV 236
Query: 315 IGPAILSIIDTM 326
+ +S + +
Sbjct: 237 MYFVTVSFVSAV 248
>gi|218848100|ref|YP_002454863.1| hypothetical protein BCG9842_0198 [Bacillus cereus G9842]
gi|218546231|gb|ACK98624.1| conserved hypothetical protein [Bacillus cereus G9842]
Length = 290
Score = 56.8 bits (136), Expect = 4e-06, Method: Composition-based stats.
Identities = 38/264 (14%), Positives = 98/264 (37%), Gaps = 24/264 (9%)
Query: 60 ITSLQKDSASSRLRTRDSKSLRNFVKKLNLK---AILVDENIVNKLRAAGFRSEYSLNIL 116
+ ++K+ + S +T+ K L +K N K + +E + K + A + +
Sbjct: 31 VEEIEKEQSQSSQQTQLEKYLTPLLKLTNSKIKISASKEEELRRKFKEANMSMDPA--SF 88
Query: 117 LVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQ 176
+ +++ P+I I + YD + + + + + + P + ++ +
Sbjct: 89 YMYKILYPVICFIFLLFIGMAYDNTI-------ILIMAVGSILTYFYPDFNLKKRLKIAR 141
Query: 177 SSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQS-VPLSEEMLLTIAELSFLPNR 235
K P L L + +++ + D + ++++ G P EE+++ E+
Sbjct: 142 ERRKFELPSYLMPLGVRLQAFTTYDA--VKGSKEMAGPYLRPFVEELII---EMETFQGS 196
Query: 236 QVAFENFYNRTQMDCVRNATQALIQSDRYGTSIG--DSLRVLVSETRSERLMEAEKKAAS 293
F+NF + + AL Q+ + + ++ + +R R ++
Sbjct: 197 NKPFKNFAEKLDIPEAHTFVIALQQAINV-DPVKGREIIQQQIDVSRKLRDQNYNALISA 255
Query: 294 LGPKL---TVPMIIFFLPVLILVI 314
+ V + L V ++
Sbjct: 256 RPLLMNKYNVVTVGCILIVPFTIV 279
>gi|239980168|ref|ZP_04702692.1| integral membrane protein [Streptomyces albus J1074]
gi|291452022|ref|ZP_06591412.1| integral membrane protein [Streptomyces albus J1074]
gi|291354971|gb|EFE81873.1| integral membrane protein [Streptomyces albus J1074]
Length = 307
Score = 56.8 bits (136), Expect = 4e-06, Method: Composition-based stats.
Identities = 43/316 (13%), Positives = 108/316 (34%), Gaps = 15/316 (4%)
Query: 12 TELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSR 71
T + + + I++L+ A++ R+ ++ R +S + S+
Sbjct: 5 TPILIGAVLGLGIYALVRALMPAKSSPVAQVARIDAL-----RARGSAYSSGRGTGDSTG 59
Query: 72 LRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILG 131
+ V +L + ++ L + S L ++++ L G
Sbjct: 60 RLDTLRAKVGTRVAELYFQQGWEQRSLRADLA----VLDRSWEKFLATKVLLAGAGLFFG 115
Query: 132 -IIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLL 190
+++ + + V + V F P + + R+ ++R LDL+
Sbjct: 116 PFLFVIVWRLGFGSSPIIPVWMALAFALVFFFLPDLEVRRDAADRRRDLRRVIGAYLDLV 175
Query: 191 LICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSF-LPNRQVAFENFYNRTQMD 249
+ + G + +AL AE G + ++ + + + ++ A ++
Sbjct: 176 SMSLAGGRGLPEALMAAAEVSDGWA---AKRIRNALNDARITGHSQWQALGELGEELGIE 232
Query: 250 CVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPV 309
+++ +L G + +SL R + E E A + V ++
Sbjct: 233 ELKDLAASLALVADDGAKVRESLASRAETMRHREMAEIEGAAGEKSQSMLVAQLLLCA-G 291
Query: 310 LILVIIGPAILSIIDT 325
++ +I PA + +
Sbjct: 292 FLVFLIFPAAMRVFQV 307
>gi|88601624|ref|YP_501802.1| type II secretion system protein [Methanospirillum hungatei JF-1]
gi|88187086|gb|ABD40083.1| type II secretion system protein [Methanospirillum hungatei JF-1]
Length = 625
Score = 56.8 bits (136), Expect = 4e-06, Method: Composition-based stats.
Identities = 46/242 (19%), Positives = 90/242 (37%), Gaps = 12/242 (4%)
Query: 83 FVKKLNLKAILVDENIVNKLRAAGF-RSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKL 141
F+ + A L NI +RAA S+YS +LL+ + + + I+I
Sbjct: 3 FISPRQVDAWLEGTNIRKYIRAAHLPYSQYSYFLLLLKCSIASVSIFAILTIYILSLPDD 62
Query: 142 LEYPFQLRVGAVILIGYVGFCAPSVWIS------NLVQKRQSSIKRAWPDALDLLLICVE 195
++ + ILI +V P V I + R+SSI P A+ +
Sbjct: 63 VQLIPGMANIYTILIAFV-LLVPGVIIGIFTYPQTVATGRKSSIDLDLPYAITYMQALST 121
Query: 196 SGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELS-FLPNRQVAFENFYNRTQMDCVRNA 254
+ +++ +R++ + + +E L + ++ F + A N T +
Sbjct: 122 T-MTLYNVIRKI-YEADDLFGEVGKEFGLIVRDVEVFGDDLYTAIRNLQKVTPSKNLEEF 179
Query: 255 TQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFL-PVLILV 313
L+ G + + L + R E E ++ V + F P+ +++
Sbjct: 180 LNDLLLLSNSGGDVTNFLSSRSAYFRESAARELESILKTIEVMAEVYVTAFVAGPITMII 239
Query: 314 II 315
II
Sbjct: 240 II 241
Score = 55.3 bits (132), Expect = 1e-05, Method: Composition-based stats.
Identities = 44/257 (17%), Positives = 103/257 (40%), Gaps = 16/257 (6%)
Query: 73 RTRDSKSLRNFVKKLNLK-AILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILG 131
+ SK ++F+K++ K EN++ A + S+Y+ I L + I+
Sbjct: 302 KEEYSKVDKSFLKRVEAKRKRFKLENLLKNPARA-YISDYNYGIALGC-----VCGGIVS 355
Query: 132 IIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLL 191
++ GY L E+ + + A I + + AP +S++ P+ L L+
Sbjct: 356 ALYYLGY--LNEWIPGMSLEAFISLLIIFSLAPPSLAYEGRSWFVNSVESHTPEFLRQLV 413
Query: 192 ICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCV 251
+ G+++ A+ ++ + LS+E+++T ++ A +R + V
Sbjct: 414 DMKDVGVTLQTAISLISN---SKLGVLSQELVMTSEDIRRGATTINALVRMEDRIGLVSV 470
Query: 252 RNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLI 311
+ A L+++ I D L + +++ + K +T MI++ +
Sbjct: 471 KRAISLLVKASEVTDYIKDVLIIAINDFEHYLKL----KKDRFNIAITYVMIVYLAVGIY 526
Query: 312 LVIIGPAILSIIDTMKD 328
+ +S + + +
Sbjct: 527 MYTAYSLNVSFVSSFTN 543
>gi|300694108|ref|YP_003750081.1| type II secretion system protein [Ralstonia solanacearum PSI07]
gi|299076145|emb|CBM10581.1| Type II secretion system protein [Ralstonia solanacearum PSI07]
Length = 308
Score = 56.8 bits (136), Expect = 5e-06, Method: Composition-based stats.
Identities = 31/191 (16%), Positives = 65/191 (34%), Gaps = 8/191 (4%)
Query: 125 IIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWP 184
+ L+LG + + AV+L V N ++ + + P
Sbjct: 84 LYLLVLGPLAAVALGAWVVSSLMSAAMAVLLYALVAAFL----FWNRTRRMNERLMQQLP 139
Query: 185 DALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYN 244
LD ++ + G ++ A + + PL + + A
Sbjct: 140 GFLDGMVRLMSIGSAVPAAFQAAS---ANTEPPLRTCLTSATQLQRAGKDLDAAVLAVGQ 196
Query: 245 RTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMII 304
+ +++ + + L + RYG + + R + + E A S +L+ I+
Sbjct: 197 QYRVNELILLSSVLRLALRYGGRADIVMERTAAFMRDRQQAQKELLALSAETRLSA-WIL 255
Query: 305 FFLPVLILVII 315
LPV++ II
Sbjct: 256 GLLPVVVGGII 266
>gi|134282399|ref|ZP_01769104.1| type II secretion system protein [Burkholderia pseudomallei 305]
gi|134246437|gb|EBA46526.1| type II secretion system protein [Burkholderia pseudomallei 305]
Length = 335
Score = 56.8 bits (136), Expect = 5e-06, Method: Composition-based stats.
Identities = 33/165 (20%), Positives = 55/165 (33%), Gaps = 7/165 (4%)
Query: 163 APSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEM 222
W+ + +QKR+ I R P LD ++ V G S+ A + + PL +
Sbjct: 145 LAVFWLVSRMQKRRLRIVRQLPSFLDGIVRLVTLGNSVPAAFQ---ATLQTTEAPLRGCL 201
Query: 223 LLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSE 282
L A + ++ L S +YG L + R
Sbjct: 202 DHVSRMLRSGVEIDRAMVSIAALYRIKEFELVGSVLRLSVKYGGRADVMLDRMAVFMRDL 261
Query: 283 RLMEAEKKAASLGPKLTVPMIIFFLPV---LILVIIGPAILSIID 324
E E A S +L+ ++ LPV ++ P S +
Sbjct: 262 EQAERELVAMSAETRLSA-WVLGALPVGIGSFVIATNPKYFSAMW 305
>gi|53719506|ref|YP_108492.1| putative fimbriae-related outer membrane protein [Burkholderia
pseudomallei K96243]
gi|76810037|ref|YP_333344.1| putative fimbriae-related outer membrane protein [Burkholderia
pseudomallei 1710b]
gi|126438493|ref|YP_001058810.1| type II secretion system protein [Burkholderia pseudomallei 668]
gi|126453046|ref|YP_001066061.1| type II secretion system protein [Burkholderia pseudomallei 1106a]
gi|242314637|ref|ZP_04813653.1| type II secretion system protein [Burkholderia pseudomallei 1106b]
gi|254188636|ref|ZP_04895147.1| type II secretion system protein [Burkholderia pseudomallei Pasteur
52237]
gi|254197238|ref|ZP_04903660.1| type II secretion system protein [Burkholderia pseudomallei S13]
gi|254259377|ref|ZP_04950431.1| type II secretion system protein [Burkholderia pseudomallei 1710a]
gi|254297790|ref|ZP_04965243.1| type II secretion system protein [Burkholderia pseudomallei 406e]
gi|52209920|emb|CAH35892.1| putative fimbriae-related outer membrane protein [Burkholderia
pseudomallei K96243]
gi|76579490|gb|ABA48965.1| putative fimbriae-related outer membrane protein [Burkholderia
pseudomallei 1710b]
gi|126217986|gb|ABN81492.1| type II secretion system protein [Burkholderia pseudomallei 668]
gi|126226688|gb|ABN90228.1| type II secretion system protein [Burkholderia pseudomallei 1106a]
gi|157807876|gb|EDO85046.1| type II secretion system protein [Burkholderia pseudomallei 406e]
gi|157936315|gb|EDO91985.1| type II secretion system protein [Burkholderia pseudomallei Pasteur
52237]
gi|169653979|gb|EDS86672.1| type II secretion system protein [Burkholderia pseudomallei S13]
gi|242137876|gb|EES24278.1| type II secretion system protein [Burkholderia pseudomallei 1106b]
gi|254218066|gb|EET07450.1| type II secretion system protein [Burkholderia pseudomallei 1710a]
Length = 335
Score = 56.8 bits (136), Expect = 5e-06, Method: Composition-based stats.
Identities = 33/165 (20%), Positives = 55/165 (33%), Gaps = 7/165 (4%)
Query: 163 APSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEM 222
W+ + +QKR+ I R P LD ++ V G S+ A + + PL +
Sbjct: 145 LAVFWLVSRMQKRRLRIVRQLPSFLDGIVRLVTLGNSVPAAFQ---ATLQTTEAPLRGCL 201
Query: 223 LLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSE 282
L A + ++ L S +YG L + R
Sbjct: 202 DHVSRMLRSGVEIDRAMVSIAALYRIKEFELVGSVLRLSVKYGGRADVMLDRMAVFMRDL 261
Query: 283 RLMEAEKKAASLGPKLTVPMIIFFLPV---LILVIIGPAILSIID 324
E E A S +L+ ++ LPV ++ P S +
Sbjct: 262 EQAERELVAMSAETRLSA-WVLGALPVGIGSFVIATNPKYFSAMW 305
>gi|298345868|ref|YP_003718555.1| hypothetical protein HMPREF0573_10742 [Mobiluncus curtisii ATCC
43063]
gi|304390427|ref|ZP_07372380.1| type II secretion system protein [Mobiluncus curtisii subsp.
curtisii ATCC 35241]
gi|298235929|gb|ADI67061.1| conserved hypothetical protein [Mobiluncus curtisii ATCC 43063]
gi|304326183|gb|EFL93428.1| type II secretion system protein [Mobiluncus curtisii subsp.
curtisii ATCC 35241]
Length = 408
Score = 56.8 bits (136), Expect = 5e-06, Method: Composition-based stats.
Identities = 45/235 (19%), Positives = 85/235 (36%), Gaps = 13/235 (5%)
Query: 94 VDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAV 153
V + I L A R + RL+ + LG+ G D + V
Sbjct: 183 VADGIAATLETAAKRHTAQVGPKATARLLGVLPLAALGMAQFIGVDVIDMAFRGGINTWV 242
Query: 154 ILIGYVGFCAPSVWISNLVQKRQSSIKRAW--PDALDLLLICVESGISIDQALRRVAEDI 211
+IG A ++W + ++++ S A+D++ C ++G+S+ L V+
Sbjct: 243 FVIGLGLMVAGNLWSAAMIRQATGSSVTGLDPTLAMDIIAACQQNGVSLTSTLEAVSAAS 302
Query: 212 GGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDS 271
+ + L + A+ + + L + G S
Sbjct: 303 EEAD------LAVVARMLLLGADWDEAWAQADTKWV-----DLASVLQPAWEEGASPVPL 351
Query: 272 LRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
L S TR+ + A A LG +L +P+ + LP + I P ++S I+ +
Sbjct: 352 LVRGASRTRTAEIHRAVDAAERLGVRLMIPLGVCLLPAFFALGIVPVVVSTIEDL 406
>gi|167769280|ref|ZP_02441333.1| hypothetical protein ANACOL_00603 [Anaerotruncus colihominis DSM
17241]
gi|167668248|gb|EDS12378.1| hypothetical protein ANACOL_00603 [Anaerotruncus colihominis DSM
17241]
Length = 290
Score = 56.8 bits (136), Expect = 5e-06, Method: Composition-based stats.
Identities = 31/202 (15%), Positives = 73/202 (36%), Gaps = 10/202 (4%)
Query: 124 PIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAW 183
+ G + + LL +P + V+L+ + + ++ I+
Sbjct: 92 AFAMIKTGAVLLTVIPCLLIFPMLALI--VVLLAVAVYFKEIRRAEEKLSAKRDEIEAEL 149
Query: 184 PDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFY 243
P + + + + + L + S E+ + A++ + + A F
Sbjct: 150 PRFVATITQELAASRDV---LSMIEHYKQNSGPVFSAELDVLTADMRSG-SYEAALTRFE 205
Query: 244 NRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKL---TV 300
R + + + LI R G + ++L + + L + KA + PK+ +
Sbjct: 206 ARFNSPLLSDIVRGLIGVLR-GDNGVHYFQMLSHDMKQLELQRLKAKAMKIPPKIRVFSF 264
Query: 301 PMIIFFLPVLILVIIGPAILSI 322
+++ FL + +II I S+
Sbjct: 265 VLLMCFLVTYLSIIIYEIIHSL 286
>gi|163840095|ref|YP_001624500.1| flp pilus assembly protein [Renibacterium salmoninarum ATCC 33209]
gi|162953571|gb|ABY23086.1| type II secretion system protein [Renibacterium salmoninarum ATCC
33209]
Length = 284
Score = 56.8 bits (136), Expect = 5e-06, Method: Composition-based stats.
Identities = 23/133 (17%), Positives = 47/133 (35%), Gaps = 3/133 (2%)
Query: 126 IFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPD 185
I + LL + + G P + + ++R + ++ WPD
Sbjct: 51 IGFAATCLGCGVTAFLLTFIISASMPIACCFTVFGLMLPVLVVRRRAKRRIAVLRELWPD 110
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
+D L + +G+S+ +AL ++AE PL A+ + + + + R
Sbjct: 111 VVDHLRSAIRAGLSLAEALIQLAEK---GPEPLRPYFRDFGADYRAGGSFETSLDLLKER 167
Query: 246 TQMDCVRNATQAL 258
+AL
Sbjct: 168 LADPVADRIFEAL 180
>gi|322370282|ref|ZP_08044841.1| type IV pilus biogenesis complex membrane subunit [Haladaptatus
paucihalophilus DX253]
gi|320549990|gb|EFW91645.1| type IV pilus biogenesis complex membrane subunit [Haladaptatus
paucihalophilus DX253]
Length = 680
Score = 56.4 bits (135), Expect = 5e-06, Method: Composition-based stats.
Identities = 37/207 (17%), Positives = 82/207 (39%), Gaps = 12/207 (5%)
Query: 114 NILLVVRLVVPIIFLILGIIWIFG-----YDKLLEYPFQLRVGAVILIGYVGFCAPSVWI 168
N L V+ + +P +++ G + L P V + YV +V+
Sbjct: 389 NPLYVLGITLPTSMVLVASAVWTGTVASSVEGLRANPTWTTFVYVYIPLYVNGVPLAVFR 448
Query: 169 SNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAE 228
V+ R I++ D L L ++G+++ ++++ VAE S L++E A+
Sbjct: 449 EWNVRSRHKVIRK-LSDDLRKLSSANDTGLTLLESVKNVAE---TSSGKLADEFDRIHAK 504
Query: 229 LSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAE 288
+ + + A F NR + + + + ++ + I L + + A
Sbjct: 505 VEYGMGMKAALIEFNNRYHIPRLARTVKLISKAQEASSQITAVLTTAAQTS-ENQDDIAR 563
Query: 289 KKAASLGPKLTVPMIIFFLPVLILVII 315
++ + ++ V +II L+ V+
Sbjct: 564 ERRSRA--RMQVVIIIMTYLTLLAVMA 588
Score = 40.2 bits (93), Expect = 0.41, Method: Composition-based stats.
Identities = 25/170 (14%), Positives = 58/170 (34%), Gaps = 9/170 (5%)
Query: 121 LVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIK 180
+ +P+ + + L+ + + +GAV + G V + R+ I
Sbjct: 93 IGMPVSGTVAEALNALKVPALV-FGTGVVLGAVGFLAGFGTVL--VIPYSRAGARKREIN 149
Query: 181 RAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELS-FLPNRQVAF 239
PDA+ + G++ + L +A +S E + E F + + A
Sbjct: 150 MLLPDAISFMYALSIGGLNQLEILEAMA-KADDTYGEVSREFQSVVQETEYFDIDYRNAI 208
Query: 240 ENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEK 289
T D + ++ G ++ L + + + + A++
Sbjct: 209 RKRALETPSDELSQFFTDMLSIINSGGNMTRFL----DDKKDKHMRTAKQ 254
>gi|330830428|ref|YP_004393380.1| Flp pilus assembly protein TadB [Aeromonas veronii B565]
gi|328805564|gb|AEB50763.1| Flp pilus assembly protein TadB [Aeromonas veronii B565]
Length = 294
Score = 56.4 bits (135), Expect = 5e-06, Method: Composition-based stats.
Identities = 24/139 (17%), Positives = 45/139 (32%), Gaps = 7/139 (5%)
Query: 177 SSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQ 236
+ P+ +D ++ + G + ++VA G +S EL
Sbjct: 117 EQFRTGLPEVIDGMIRALRVGAPLADIFQQVARQQRGL---MSRLFAQMHDELQVGQPVA 173
Query: 237 VAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASL-- 294
NR + + T L G + D L LV R+ + + A + +
Sbjct: 174 QVMRQAANRVTVAEFQFLTIVLSLQQETGGRLSDVLAQLVETLRARQTLAASIQTITAES 233
Query: 295 --GPKLTVPMIIFFLPVLI 311
K+ + + L VL
Sbjct: 234 RNSAKVLAALPVIILLVLF 252
>gi|257793130|ref|YP_003186528.1| hypothetical protein Aaci_3143 [Alicyclobacillus acidocaldarius
subsp. acidocaldarius DSM 446]
gi|257479822|gb|ACV60139.1| hypothetical protein Aaci_3143 [Alicyclobacillus acidocaldarius
subsp. acidocaldarius DSM 446]
Length = 268
Score = 56.4 bits (135), Expect = 5e-06, Method: Composition-based stats.
Identities = 32/188 (17%), Positives = 70/188 (37%), Gaps = 5/188 (2%)
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
+L + + L+ + + +++G+ +++ ++ + ++
Sbjct: 66 FLLFLFFAAVLLPLMIWGGMHSLTFGVVVGWSMAVYMAMYPWQKRKRFEDDLRFGLRRVK 125
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQ 247
L+ E GI+ + L + I L + + + A T
Sbjct: 126 MLMASLYERGITPEDMLPLL---ISATDGALRQLLERAYQRMQTTDTLADALTWMAQETG 182
Query: 248 MDCVRNATQALIQSDRY-GTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFF 306
+ +R IQ+ RY GTS+ L+ + + R++ L EK+A + +I F
Sbjct: 183 LAEMRQLASVWIQAGRYEGTSLETQLKQMAVDERAQFLFNLEKRAERKRMSVLFEVIAFI 242
Query: 307 -LPVLILV 313
LP + LV
Sbjct: 243 ALPTIFLV 250
>gi|291087379|ref|ZP_06346291.2| putative bacterial type II secretion system protein F domain
protein [Clostridium sp. M62/1]
gi|291075554|gb|EFE12918.1| putative bacterial type II secretion system protein F domain
protein [Clostridium sp. M62/1]
Length = 268
Score = 56.4 bits (135), Expect = 5e-06, Method: Composition-based stats.
Identities = 34/184 (18%), Positives = 73/184 (39%), Gaps = 14/184 (7%)
Query: 142 LEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISID 201
+ Y F L G P L ++R+ +KR + +A+ +L + +G S++
Sbjct: 50 VSYVFYRNAAVFFLFLPAGILYPLYKKRELKKRRKEELKRQFKEAVLMLSSSLAAGYSME 109
Query: 202 QALRRV---AEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQAL 258
+ + ++ G+ +++E +LS + + +F +R+ ++ +R+ L
Sbjct: 110 NSFSQAEIQLRELYGERAMMADEFSDMRRQLSLNRTLEELWSDFADRSGVEEIRSFALIL 169
Query: 259 IQSDRYGTSIGDSLRVLV----------SETRSERLMEA-EKKAASLGPKLTVPMIIFFL 307
+ R G +G + + E R+ + E+K +L P L V I
Sbjct: 170 RSARRNGGRMGAVISHIAEIIGGKLQVQEEIRTMTAQKQFEQKIMNLLPILIVLYIDVTS 229
Query: 308 PVLI 311
P
Sbjct: 230 PGFF 233
>gi|67641291|ref|ZP_00440072.1| type II secretion system protein [Burkholderia mallei GB8 horse 4]
gi|121598780|ref|YP_993095.1| type II secretion system protein [Burkholderia mallei SAVP1]
gi|124386324|ref|YP_001026128.1| hypothetical protein BMA10229_A0120 [Burkholderia mallei NCTC
10229]
gi|126449995|ref|YP_001080600.1| type II secretion system protein [Burkholderia mallei NCTC 10247]
gi|167002478|ref|ZP_02268268.1| type II secretion system protein [Burkholderia mallei PRL-20]
gi|254178697|ref|ZP_04885352.1| type II secretion system protein [Burkholderia mallei ATCC 10399]
gi|254206226|ref|ZP_04912578.1| type II secretion system protein [Burkholderia mallei JHU]
gi|121227590|gb|ABM50108.1| type II secretion system protein [Burkholderia mallei SAVP1]
gi|124294344|gb|ABN03613.1| putative membrane protein [Burkholderia mallei NCTC 10229]
gi|126242865|gb|ABO05958.1| type II secretion system protein [Burkholderia mallei NCTC 10247]
gi|147753669|gb|EDK60734.1| type II secretion system protein [Burkholderia mallei JHU]
gi|160699736|gb|EDP89706.1| type II secretion system protein [Burkholderia mallei ATCC 10399]
gi|238522200|gb|EEP85646.1| type II secretion system protein [Burkholderia mallei GB8 horse 4]
gi|243061819|gb|EES44005.1| type II secretion system protein [Burkholderia mallei PRL-20]
Length = 306
Score = 56.4 bits (135), Expect = 5e-06, Method: Composition-based stats.
Identities = 33/165 (20%), Positives = 55/165 (33%), Gaps = 7/165 (4%)
Query: 163 APSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEM 222
W+ + +QKR+ I R P LD ++ V G S+ A + + PL +
Sbjct: 116 LAVFWLVSRMQKRRLRIVRQLPSFLDGIVRLVTLGNSVPAAFQ---ATLQTTEAPLRGCL 172
Query: 223 LLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSE 282
L A + ++ L S +YG L + R
Sbjct: 173 DHVSRMLRSGVEIDRAMVSIAALYRIKEFELVGSVLRLSVKYGGRADVMLDRMAVFMRDL 232
Query: 283 RLMEAEKKAASLGPKLTVPMIIFFLPV---LILVIIGPAILSIID 324
E E A S +L+ ++ LPV ++ P S +
Sbjct: 233 EQAERELVAMSAETRLSA-WVLGALPVGIGSFVIATNPKYFSAMW 276
>gi|238062254|ref|ZP_04606963.1| hypothetical protein MCAG_03220 [Micromonospora sp. ATCC 39149]
gi|237884065|gb|EEP72893.1| hypothetical protein MCAG_03220 [Micromonospora sp. ATCC 39149]
Length = 245
Score = 56.4 bits (135), Expect = 5e-06, Method: Composition-based stats.
Identities = 40/189 (21%), Positives = 79/189 (41%), Gaps = 6/189 (3%)
Query: 135 IFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICV 194
+FG L+ + ++ ++R+ P A DLL +
Sbjct: 59 LFGLAVLVVLGGWSGLLGGVVAAVAADRGLRRIEPPAARERRLREAADLPLAADLLAAAM 118
Query: 195 ESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNA 254
+G S+D+++ VA+ +GG PL++ + L Q A+ + +
Sbjct: 119 RAGASVDRSVLAVADALGG---PLADRLGRVGRTLLLGGGPQEAWSHL---LPVPGAERL 172
Query: 255 TQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVI 314
A ++S G ++ +L L + R++R AE A G + +P+ + FLP IL
Sbjct: 173 AGAALRSSNSGAALAGALTRLADDLRADRSTAAEAAARRAGVLIVLPLGLCFLPAFILAG 232
Query: 315 IGPAILSII 323
+ P I++++
Sbjct: 233 LVPVIVAVL 241
>gi|229587496|ref|YP_002860534.1| putative bacterial type II secretion system protein F domain
protein [Clostridium botulinum Ba4 str. 657]
gi|229260234|gb|ACQ51271.1| putative bacterial type II secretion system protein F domain
protein [Clostridium botulinum Ba4 str. 657]
Length = 164
Score = 56.4 bits (135), Expect = 5e-06, Method: Composition-based stats.
Identities = 26/144 (18%), Positives = 59/144 (40%), Gaps = 3/144 (2%)
Query: 181 RAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFE 240
P L+ L+ ++ G+ + L ++ + G + L + L + +++ + A
Sbjct: 20 NELPAVLETLIQGLQIGMPVYPILLYISNNKKGNTADL---INLCVTKVNSGMDINKALR 76
Query: 241 NFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV 300
++ D + ++DR ++ L L + ER+ + A L L
Sbjct: 77 EVAEKSLNDYFLRMALIIEKTDRSVINLDKQLEYLQQDMEEERINIKTEHADKLDNALFF 136
Query: 301 PMIIFFLPVLILVIIGPAILSIID 324
PM+I + LI++I+ P + +
Sbjct: 137 PMLIGYFIPLIIMILVPLLRQMTK 160
>gi|167767552|ref|ZP_02439605.1| hypothetical protein CLOSS21_02071 [Clostridium sp. SS2/1]
gi|167710844|gb|EDS21423.1| hypothetical protein CLOSS21_02071 [Clostridium sp. SS2/1]
gi|291558489|emb|CBL37289.1| Flp pilus assembly protein TadB [butyrate-producing bacterium
SSC/2]
Length = 252
Score = 56.4 bits (135), Expect = 5e-06, Method: Composition-based stats.
Identities = 31/202 (15%), Positives = 78/202 (38%), Gaps = 12/202 (5%)
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
L+ GI +I ++ + F R+ IL+ F + + + +++ + + +
Sbjct: 25 LVKGICYIV----MIAWLFFDRIAFAILLIPYLFVFMKQQRIHKGHREKEKLRKEFREMM 80
Query: 188 DLLLICVESGISIDQALRRVAE--DIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
+ + +G SI+ AL+ ++ + L++E+ L I +L +
Sbjct: 81 ISIGNSLSAGYSIENALKTAKNDLEMYEEHSLLAKELQLLINKLKMNEPVDNLLFDMAEH 140
Query: 246 TQMDCVRNATQALIQSDRYGTSIGD----SLRVLVSETRSERLMEAEKKAASLGPKLTVP 301
++ Q + + + G ++ + ++ L +++ + A + K+
Sbjct: 141 VGLEEFYQFAQVISIAKKSGGNLIEITENTIEHLSQAIQTKEEIHTMIAAKQMEKKIMSV 200
Query: 302 MIIFFLPVLILVIIGPAILSII 323
M F L L + I P I+
Sbjct: 201 MPYFIL--LYVRIANPGYFDIL 220
>gi|237812070|ref|YP_002896521.1| type II secretion system protein [Burkholderia pseudomallei
MSHR346]
gi|237505569|gb|ACQ97887.1| type II secretion system protein [Burkholderia pseudomallei
MSHR346]
Length = 329
Score = 56.4 bits (135), Expect = 5e-06, Method: Composition-based stats.
Identities = 33/165 (20%), Positives = 55/165 (33%), Gaps = 7/165 (4%)
Query: 163 APSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEM 222
W+ + +QKR+ I R P LD ++ V G S+ A + + PL +
Sbjct: 139 LAVFWLVSRMQKRRLRIVRQLPSFLDGIVRLVTLGNSVPAAFQ---ATLQTTEAPLRGCL 195
Query: 223 LLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSE 282
L A + ++ L S +YG L + R
Sbjct: 196 DHVSRMLRSGVEIDRAMVSIAALYRIKEFELVGSVLRLSVKYGGRADVMLDRMAVFMRDL 255
Query: 283 RLMEAEKKAASLGPKLTVPMIIFFLPV---LILVIIGPAILSIID 324
E E A S +L+ ++ LPV ++ P S +
Sbjct: 256 EQAERELVAMSAETRLSA-WVLGALPVGIGSFVIATNPKYFSAMW 299
>gi|258651873|ref|YP_003201029.1| type II secretion system protein [Nakamurella multipartita DSM
44233]
gi|258555098|gb|ACV78040.1| type II secretion system protein [Nakamurella multipartita DSM
44233]
Length = 284
Score = 56.4 bits (135), Expect = 6e-06, Method: Composition-based stats.
Identities = 36/197 (18%), Positives = 65/197 (32%), Gaps = 17/197 (8%)
Query: 96 ENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVIL 155
E L AG + + L + + L + + I
Sbjct: 34 ERTREHLLQAGLPGISPVQLF---------GLQALSAVLVGLLGLTLTQSVSVSLIFAIF 84
Query: 156 IGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQS 215
V P++ +S L KRQ+ ++ WP+ +D L V +G+S+ +AL + + Q
Sbjct: 85 AAAV----PALMVSRLRHKRQADLRELWPEVVDNLTSGVRAGLSLPEALAAIGDRGPEQ- 139
Query: 216 VPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRY-GTSIGDSLRV 274
L + A+ + + ++L + GT +G L
Sbjct: 140 --LRDPFKQFGADYRTTGRFNDSLDRLKATLADPVGDRVIESLRVAREVGGTDLGRLLST 197
Query: 275 LVSETRSERLMEAEKKA 291
L R + AE A
Sbjct: 198 LSGFLRDDARTRAELLA 214
>gi|154151924|ref|YP_001405542.1| type II secretion system protein [Candidatus Methanoregula boonei
6A8]
gi|154000476|gb|ABS56899.1| type II secretion system protein [Methanoregula boonei 6A8]
Length = 610
Score = 56.4 bits (135), Expect = 6e-06, Method: Composition-based stats.
Identities = 31/195 (15%), Positives = 73/195 (37%), Gaps = 8/195 (4%)
Query: 121 LVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIK 180
L+ + + + + +P G V LI +GF AP + +++
Sbjct: 352 LIAGVTCAGIFALTLASGGMNALFPKNAYEGGVCLIA-IGFMAPVSLAYEGRRWYVINVE 410
Query: 181 RAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFE 240
P+ L L ++ G+++ A+ R++ + LS E+ + ++S A
Sbjct: 411 NNIPEFLRELSDMIDIGLTLPDAIHRISN---AKLGLLSSELAIVSRDVSTGAYVNSALV 467
Query: 241 NFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV 300
R + V+ A L+++ +++ D + +++ + +E +
Sbjct: 468 RMEERIGVISVKRAISLLVKASEVTSNLRDIFVIAITDFEHYLKLRSE----RANTAIVY 523
Query: 301 PMIIFFLPVLILVII 315
MII+ + L
Sbjct: 524 VMIIYLSFGIYLYTA 538
Score = 44.9 bits (105), Expect = 0.016, Method: Composition-based stats.
Identities = 36/200 (18%), Positives = 70/200 (35%), Gaps = 11/200 (5%)
Query: 81 RNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDK 140
R V N + +++ N+ LR+A S + L R+ LI + F
Sbjct: 9 RAGVSLQNAELVILGTNLNRDLRSA-HLSYTAEQYLRTTRINSAATTLIFFAFFGFVQFT 67
Query: 141 LLEYPFQLRVGAVIL-IGYVGFCAPSVWISN------LVQKRQSSIKRAWPDALDLLLIC 193
++ + +I I C P +++ + + R+S I P A+ +
Sbjct: 68 GYDFGLFALIPPLIFWIFLFALCVPGMYLFQVYYPVMIARGRKSKIDLDLPYAVSYMQAL 127
Query: 194 VESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELS-FLPNRQVAFENFYNRTQMDCVR 252
+ +S + ++R+ E+ +S E + ++ F + A N T R
Sbjct: 128 STT-MSPFEVVKRIYEE-KAMFNEVSLEFGQVVRDVELFGDDLITALHNLQKTTPSPLFR 185
Query: 253 NATQALIQSDRYGTSIGDSL 272
+ L G I L
Sbjct: 186 DFVNDLGVVYESGGDITAYL 205
>gi|332982943|ref|YP_004464384.1| Type II secretion system F domain-containing protein [Mahella
australiensis 50-1 BON]
gi|332700621|gb|AEE97562.1| Type II secretion system F domain protein [Mahella australiensis
50-1 BON]
Length = 308
Score = 56.4 bits (135), Expect = 6e-06, Method: Composition-based stats.
Identities = 36/233 (15%), Positives = 90/233 (38%), Gaps = 19/233 (8%)
Query: 96 ENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVIL 155
+ LR AG + + LL + ++ I+F +L I + F L +G +I+
Sbjct: 62 DKFRELLRKAGLAKINAEDALLSLTVLSVILFAVLNIA------GMGWLSFLLPIGLIIV 115
Query: 156 IGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQS 215
I ++ + R + + + + +A+ + ++ +++ +R A+
Sbjct: 116 IP--------WVLNMIGTSRHNKLNKQFAEAVQDMADRLKLVPNLENGIRETAQ---ITD 164
Query: 216 VPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVL 275
PL E+ + +L A ++F ++ + +++ + + S+ D +
Sbjct: 165 QPLHGELEKILHKLDTGIGIIPALKDFARDSESTMIDFWVDSIVFAYQMRASVADVCEEV 224
Query: 276 VSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVII--GPAILSIIDTM 326
+TR+ + K + I + L+ ++ P L+ DT+
Sbjct: 225 SQKTRTRLKQNNQVATKLSEIKSMMLSIAGIMIALMFMVYSSSPEYLNSFDTL 277
>gi|307730003|ref|YP_003907227.1| type II secretion system F domain-containing protein [Burkholderia
sp. CCGE1003]
gi|307584538|gb|ADN57936.1| Type II secretion system F domain protein [Burkholderia sp.
CCGE1003]
Length = 404
Score = 56.4 bits (135), Expect = 6e-06, Method: Composition-based stats.
Identities = 34/161 (21%), Positives = 54/161 (33%), Gaps = 6/161 (3%)
Query: 149 RVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVA 208
AV L G F +S +R+ +I R P LD ++ + G S+ A +
Sbjct: 201 LAAAVTLAGCAVFLY--FIMSMRASRRRQAIVRQLPSFLDGIVRLITLGNSVPAAFQ--- 255
Query: 209 EDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSI 268
+ PL E + L A + + L S +YG
Sbjct: 256 ASLRTTEAPLRECLDHVSRMLRSGVEIDRALSHVAVLYGARELELLGAVLRLSVKYGGRA 315
Query: 269 GDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPV 309
L + S R E E A S +L+ ++ LP+
Sbjct: 316 DVMLDRMSSFMRDLEQAERELVAMSSETRLSS-WVLGMLPI 355
>gi|256824883|ref|YP_003148843.1| Flp pilus assembly protein TadB [Kytococcus sedentarius DSM 20547]
gi|256688276|gb|ACV06078.1| Flp pilus assembly protein TadB [Kytococcus sedentarius DSM 20547]
Length = 286
Score = 56.4 bits (135), Expect = 6e-06, Method: Composition-based stats.
Identities = 33/167 (19%), Positives = 63/167 (37%), Gaps = 4/167 (2%)
Query: 126 IFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPD 185
L+L + +L + G + P +S ++R+S ++ AWPD
Sbjct: 53 GGLVLATAALGVVTFVLTAGLTGVLPVAAAFGLIASGLPWAVLSGTSRRRRSRLRDAWPD 112
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
+D + V +G+++ +AL ++A + P + V+ + R
Sbjct: 113 CVDHVASGVRAGMALPEALAQLAVRGPEELRPA---FAGFAHDYRATGRFHVSLDALKER 169
Query: 246 TQMDCVRNATQALIQSDRYGTS-IGDSLRVLVSETRSERLMEAEKKA 291
++L + G S +G LR L S R E +E +A
Sbjct: 170 LSDPVADRLVESLRIAREVGGSDLGVVLRTLSSFLREEAHTRSEMEA 216
>gi|320156057|ref|YP_004188436.1| flp pilus assembly protein TadB [Vibrio vulnificus MO6-24/O]
gi|319931369|gb|ADV86233.1| flp pilus assembly protein TadB [Vibrio vulnificus MO6-24/O]
Length = 294
Score = 56.0 bits (134), Expect = 7e-06, Method: Composition-based stats.
Identities = 42/251 (16%), Positives = 85/251 (33%), Gaps = 9/251 (3%)
Query: 68 ASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIF 127
+ +RTR + R + LK ++ E + A R E L + + + ++
Sbjct: 14 GAWLIRTRRENAKREKQRHRYLKPLVSVEKKRPQWLAFYTRLETLLGTSRLQKYRLYLVM 73
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
L +G+ + + V + ++ V + + Q + PD +
Sbjct: 74 LTVGLFITLLSQGMAPLTTLILVVVISVMMTV------LAFRHFEQLAINEFNMQMPDII 127
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQ 247
D + V+ G + ++E G + L L L + + + +
Sbjct: 128 DSMERAVKVGAPLHDIFFALSEQYQGSAKRL---FLAMHDRLKLGHSVERVMQFAAQQMP 184
Query: 248 MDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFL 307
R T L G + L+ L R LME+ + + + + ++
Sbjct: 185 SQEFRFLTTLLSLQSETGGKLSHMLKQLGQTLRERSLMESRVRTITSESRTSAKVLAILP 244
Query: 308 PVLILVIIGPA 318
P LI V+ G A
Sbjct: 245 PALIGVLYGSA 255
>gi|239817415|ref|YP_002946325.1| type II secretion system protein [Variovorax paradoxus S110]
gi|239803992|gb|ACS21059.1| type II secretion system protein [Variovorax paradoxus S110]
Length = 241
Score = 56.0 bits (134), Expect = 7e-06, Method: Composition-based stats.
Identities = 38/201 (18%), Positives = 70/201 (34%), Gaps = 8/201 (3%)
Query: 121 LVVPIIFLILGIIWIFGYDKLLEYPFQLRV-GAVILIGYVGFCAPSVWISNLVQKRQSSI 179
++ +I + I + G L L A + + + A + +QK + +
Sbjct: 8 WLLGVIPPKVATIAVIGILVLCLLAGLLGGVIAAVGVLLLLLLASVFAVWLRLQKVRRQL 67
Query: 180 KRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAF 239
P +D ++ + G S A + I PL M + A + + A
Sbjct: 68 ISQLPAYIDAMVRLITIGNSTQAAFQLA---IATTQAPLRGHMERSAALVRAGVDLDRAL 124
Query: 240 ENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLT 299
N +++ + L RYG L + + R E E A S +L+
Sbjct: 125 HQTANNVRVEEMFLLASILGLGVRYGGRSDLLLERVANFMRDREQAEHELVAMSAETRLS 184
Query: 300 VPMIIFFLPV---LILVIIGP 317
I+ LP+ LV++ P
Sbjct: 185 A-WILGLLPLGVGTFLVVVNP 204
>gi|307354354|ref|YP_003895405.1| type II secretion system F domain-containing protein [Methanoplanus
petrolearius DSM 11571]
gi|307157587|gb|ADN36967.1| Type II secretion system F domain protein [Methanoplanus
petrolearius DSM 11571]
Length = 615
Score = 56.0 bits (134), Expect = 7e-06, Method: Composition-based stats.
Identities = 24/166 (14%), Positives = 68/166 (40%), Gaps = 4/166 (2%)
Query: 125 IIFLILGIIWI-FGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAW 183
F+ G+++ + + Q A+I I + P + + + ++++
Sbjct: 359 FGFVAAGLVFFTYYIGSFPQLMPQNTTEALICIMLISGMLPVMLSYEIRSRYVRNVEKQL 418
Query: 184 PDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFY 243
P+ L + + G+++ A+ + ++ LS E+ + E+ + + A
Sbjct: 419 PELLREISDMRDIGMTLQSAITMI---SSSKNSVLSSEIRIVSDEMKYGSSLSGALVRME 475
Query: 244 NRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEK 289
R + V+ A L+++ +I + L + +S+ M++++
Sbjct: 476 ERVGLVSVKRAISLLVKASEVTDAIREILAIAISDLEHYLRMKSKR 521
Score = 50.3 bits (119), Expect = 5e-04, Method: Composition-based stats.
Identities = 32/234 (13%), Positives = 82/234 (35%), Gaps = 9/234 (3%)
Query: 89 LKAILVDENIVNKLRAAGFRSE--YSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYP- 145
L + L ++ + LR+A +++ + ++ ++ +++G+++ + P
Sbjct: 22 LDSFLNNKQMELLLRSAHIQTQVGQYMMASVLFSILPFFAMMMIGVLFYVFDINIELIPG 81
Query: 146 ---FQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQ 202
+ +G +LI + F + R++ I P A+ + + + D
Sbjct: 82 VPDIAVLMGGAVLISLIVFLGMYFYPQLEASGRKNRIDMDLPYAITYMQALSSTIVLYD- 140
Query: 203 ALRRVAEDIGGQSVPLSEEMLLTIAELS-FLPNRQVAFENFYNRTQMDCVRNATQALIQS 261
+ R + +S E + + ++ F + A T + + LI
Sbjct: 141 -IFRSVYEAEDLYGEVSRECGIIVRDVELFGEDLLSAMNYVVTITPSERFKELIGDLILV 199
Query: 262 DRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVII 315
R G ++ + R E E L + + F + ++I+
Sbjct: 200 YRSGGNLTNFFNAKSESYREIARQELEALLQFLEMIAEIYVTAFVAGPIAIIIM 253
>gi|302335343|ref|YP_003800550.1| Type II secretion system F domain protein [Olsenella uli DSM 7084]
gi|301319183|gb|ADK67670.1| Type II secretion system F domain protein [Olsenella uli DSM 7084]
Length = 312
Score = 56.0 bits (134), Expect = 7e-06, Method: Composition-based stats.
Identities = 34/204 (16%), Positives = 78/204 (38%), Gaps = 5/204 (2%)
Query: 113 LNILLVVRLVVPIIFLILGIIWI-FGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNL 171
++ LL V + + ++W+ L+ + + + F A + + L
Sbjct: 71 VSTLLAAHAVSLDLRQAVSLLWVSTAALALIAMATSRVLVLGPIAIALSFVAMPIASAAL 130
Query: 172 VQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSF 231
+R+ +I+R P L + + SG ++ QA+ +A GG +++ T +
Sbjct: 131 ESRRRRAIEREMPAVFRTLAMAMGSGETLSQAVDYLAAHGGG---EVAKAFTRTSLRMHC 187
Query: 232 LPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKA 291
+ + + V AL+ S R G+ + R + E
Sbjct: 188 GYPARESLDLLARELDAPGVGLLVTALLISQRTGSPLRSLFRRSARLVERQGEFERMLGV 247
Query: 292 ASLGPKLTVPMIIFFLPVLILVII 315
+ +L+V ++ LPV+++ ++
Sbjct: 248 KTAQVRLSVRVVSG-LPVIMIALL 270
>gi|283797137|ref|ZP_06346290.1| hypothetical protein CLOM621_07103 [Clostridium sp. M62/1]
gi|291075553|gb|EFE12917.1| hypothetical protein CLOM621_07103 [Clostridium sp. M62/1]
Length = 463
Score = 56.0 bits (134), Expect = 7e-06, Method: Composition-based stats.
Identities = 24/133 (18%), Positives = 50/133 (37%), Gaps = 8/133 (6%)
Query: 173 QKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIG-------GQSVPLSEEMLLT 225
+KR + + D + L + + +G+ + +A R+AE+ + EE+ +
Sbjct: 305 KKRNRELLFDYSDIVSGLCVYLNAGLPVRKAWERLAEEYREGLELPGSRRRAGYEEIAAS 364
Query: 226 IAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYG-TSIGDSLRVLVSETRSERL 284
++ ++ A+ F + R + Q + G S+ SL + ER
Sbjct: 365 VSAMNQGMPELKAYGEFGRSCGLRSYRKLAGLMTQYVKNGSGSLLKSLEEEMESAFEERK 424
Query: 285 MEAEKKAASLGPK 297
A + G K
Sbjct: 425 EAARRAGEEKGTK 437
>gi|317472142|ref|ZP_07931474.1| hypothetical protein HMPREF1011_01824 [Anaerostipes sp. 3_2_56FAA]
gi|316900546|gb|EFV22528.1| hypothetical protein HMPREF1011_01824 [Anaerostipes sp. 3_2_56FAA]
Length = 259
Score = 56.0 bits (134), Expect = 7e-06, Method: Composition-based stats.
Identities = 38/211 (18%), Positives = 80/211 (37%), Gaps = 20/211 (9%)
Query: 124 PIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAW 183
++ G+I F L L + + FC P + ++R+ I+++
Sbjct: 26 AVLKAAQGMILFFIICYLFYDRIWLGILYAV------FCFP-YMLYQAREERKMRIRQSR 78
Query: 184 PDALDLLLI---CVESGISIDQALRRVAEDIGGQSVP----LSEEMLLTIAELSFLPNRQ 236
+ ++LL + +G S++ A+R +D+ + L +E+ L A L +
Sbjct: 79 LEFKEMLLSVYNSLSAGYSLENAVRAARDDMRAVNGDKKSVLEQELSLVCAGLEVNQPIE 138
Query: 237 VAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKK----AA 292
V + R +D Q L R G ++ ++ V + ++ E A
Sbjct: 139 VLMDKMALRLGVDEASQFAQVLWIIKRNGGNLIQIIKKSVEHMNQKIQVKEEILTMVSAK 198
Query: 293 SLGPKLTVPMIIFFLPVLILVIIGPAILSII 323
+ K+ M F L L + ++ P ++
Sbjct: 199 RMEQKIMSVMPFFIL--LYVRLMNPGYFQVL 227
>gi|37680190|ref|NP_934799.1| Flp pilus assembly protein TadB [Vibrio vulnificus YJ016]
gi|37198937|dbj|BAC94770.1| Flp pilus assembly protein TadB [Vibrio vulnificus YJ016]
Length = 294
Score = 56.0 bits (134), Expect = 7e-06, Method: Composition-based stats.
Identities = 42/251 (16%), Positives = 85/251 (33%), Gaps = 9/251 (3%)
Query: 68 ASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIF 127
+ +R R + R + LK ++ E + A R E L + + + ++
Sbjct: 14 GAWLIRARRENTKREKQRHRYLKPLVSVEKKRPQWLAFYTRLETLLGTSRLQKYRLYLVM 73
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
L +G+ + + V A+ ++ V + + Q + PD +
Sbjct: 74 LTVGLFITLLSQGMAPLTTLILVVAISVMMTV------LAFRHFEQLAINEFNTQMPDII 127
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQ 247
D + V+ G + ++E G + L L L + + + +
Sbjct: 128 DSMERAVKVGAPLHDIFFALSEQYQGSAKRL---FLAMHDRLKLGHSVERVMQFAAQQMP 184
Query: 248 MDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFL 307
R T L G + L+ L R LME+ + + + + ++
Sbjct: 185 SQEFRFLTTLLSLQSETGGKLSHMLKQLGQTLRERSLMESRVRTITSESRTSAKVLAILP 244
Query: 308 PVLILVIIGPA 318
P LI V+ G A
Sbjct: 245 PALIGVLYGSA 255
>gi|229821271|ref|YP_002882797.1| type II secretion system protein [Beutenbergia cavernae DSM 12333]
gi|229567184|gb|ACQ81035.1| type II secretion system protein [Beutenbergia cavernae DSM 12333]
Length = 285
Score = 56.0 bits (134), Expect = 7e-06, Method: Composition-based stats.
Identities = 34/194 (17%), Positives = 67/194 (34%), Gaps = 17/194 (8%)
Query: 99 VNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGY 158
++L AG SL + V L + +I G +
Sbjct: 38 QDELVQAGLHG-VSLRTFVGVCLGLGLIVATAAFAVGSGASIAAAFGLIAAAA------- 89
Query: 159 VGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPL 218
P+V++ ++R+ +++ WPD +D L V +G+++ +AL ++E +
Sbjct: 90 -----PTVYVRGRARRRRVELRQVWPDVVDDLTSAVRAGMTLPEALISLSER---GPQEV 141
Query: 219 SEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTS-IGDSLRVLVS 277
E+ + + + R + L + G S +G LR L
Sbjct: 142 RAELHAFAVDYRASGRFVASLDALKERLADPVADRIVETLRIATDVGGSDLGRMLRTLSE 201
Query: 278 ETRSERLMEAEKKA 291
R + E +A
Sbjct: 202 FLRDDLRTRGELEA 215
>gi|171321819|ref|ZP_02910722.1| type II secretion system protein [Burkholderia ambifaria MEX-5]
gi|171092890|gb|EDT38140.1| type II secretion system protein [Burkholderia ambifaria MEX-5]
Length = 224
Score = 56.0 bits (134), Expect = 7e-06, Method: Composition-based stats.
Identities = 32/162 (19%), Positives = 57/162 (35%), Gaps = 5/162 (3%)
Query: 166 VWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLT 225
VW+++ +Q+R+ I R P LD ++ V G S+ A + + PL +
Sbjct: 37 VWLASRIQRRRLRIVRQIPSFLDGIVRLVTLGNSVPAAFQSA---LLTTEEPLRSCLDHV 93
Query: 226 IAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLM 285
L A + + + L S +YG L + R
Sbjct: 94 SRMLRGGVEIDRAMMHIAKIYRTEEFELVGSVLRLSVKYGGRADVMLERMAVFMRDLEQA 153
Query: 286 EAEKKAASLGPKLT--VPMIIFFLPVLILVIIGPAILSIIDT 325
E E A S +L+ V +++ +V+ P L +
Sbjct: 154 ERELTAMSSETRLSAFVLVMLPIGIGSFVVMTNPKYLHGMWN 195
>gi|167582057|ref|ZP_02374931.1| hypothetical protein BthaT_28197 [Burkholderia thailandensis TXDOH]
Length = 261
Score = 56.0 bits (134), Expect = 7e-06, Method: Composition-based stats.
Identities = 40/207 (19%), Positives = 66/207 (31%), Gaps = 16/207 (7%)
Query: 121 LVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIK 180
LV +W LL GA +++ W+++ +QKR+ I
Sbjct: 38 LVALGAVTAFATLWAGLRGGLLAAVAAFVAGATLVV---------FWLASRMQKRRLRIV 88
Query: 181 RAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFE 240
R P LD ++ V G S+ A + + PL + L A
Sbjct: 89 RQLPSFLDGIVRLVTLGNSVPAAFQ---ATLQTTDAPLRGCLDHVSRMLRSGVEIDRAMV 145
Query: 241 NFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV 300
++ L S +YG L + R E E A S +L+
Sbjct: 146 YVAALYRIKEFELVGSVLRLSVKYGGRADVMLDRMAVFMRDLEQAERELVAMSAETRLSA 205
Query: 301 PMIIFFLPV---LILVIIGPAILSIID 324
++ LPV ++ P S +
Sbjct: 206 -WVLGALPVGIGSFVIATNPKYFSAMW 231
>gi|255326720|ref|ZP_05367796.1| bacterial type II secretion system protein F domain protein [Rothia
mucilaginosa ATCC 25296]
gi|255295937|gb|EET75278.1| bacterial type II secretion system protein F domain protein [Rothia
mucilaginosa ATCC 25296]
Length = 416
Score = 56.0 bits (134), Expect = 7e-06, Method: Composition-based stats.
Identities = 32/141 (22%), Positives = 52/141 (36%), Gaps = 10/141 (7%)
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
L+LL + +G++ AL +AE + + + L N A+
Sbjct: 284 VLELLAAQLRAGLAPLAALGTLAEALNSRP------LHTVCQRLQMGSNWGSAWSGSAAG 337
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
T AL + G L L R AE+ A L L VP+ +
Sbjct: 338 T----FGELRDALAPAYTGGAPSTALLLSLADAHRLNERRAAERAAGKLSVALVVPLGLC 393
Query: 306 FLPVLILVIIGPAILSIIDTM 326
LP I + I P ++S++ T+
Sbjct: 394 SLPAFICLGIVPILISLLPTL 414
>gi|139438671|ref|ZP_01772155.1| Hypothetical protein COLAER_01156 [Collinsella aerofaciens ATCC
25986]
gi|133775751|gb|EBA39571.1| Hypothetical protein COLAER_01156 [Collinsella aerofaciens ATCC
25986]
Length = 308
Score = 56.0 bits (134), Expect = 7e-06, Method: Composition-based stats.
Identities = 34/180 (18%), Positives = 59/180 (32%), Gaps = 11/180 (6%)
Query: 131 GIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNL----VQKRQSSIKRAWPDA 186
G + + V L +G AP + ++ Q + A P+A
Sbjct: 82 GRLAFLLLSSGVCCILLTMVSLSPLGFALGLVAPIAVGAARDGFESRREQHDAEEAMPEA 141
Query: 187 LDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRT 246
L + + SG S+ Q +R V P+ E L A + + A ++ R
Sbjct: 142 FTALSMSLASGHSLAQGMRFVG---AHAQEPVHTEFLRVAAAIDCGISATDALDDLLVRI 198
Query: 247 QMDCVRNATQALIQSDRYGTSIGDSLRVLV----SETRSERLMEAEKKAASLGPKLTVPM 302
+ T AL S R G + D L +R ++ + A + + M
Sbjct: 199 DAPGLSLVTLALKVSQRTGAPLADLLSEASSMVGERIELKRRLDVKTSQARMSAHMVAAM 258
>gi|77454610|ref|YP_345478.1| hypothetical protein pREL1_0043 [Rhodococcus erythropolis PR4]
gi|77019610|dbj|BAE45986.1| conserved hypothetical membrane protein [Rhodococcus erythropolis
PR4]
Length = 299
Score = 56.0 bits (134), Expect = 8e-06, Method: Composition-based stats.
Identities = 37/211 (17%), Positives = 70/211 (33%), Gaps = 12/211 (5%)
Query: 117 LVVRLVVPIIFLILGIIWIFGYDKL-LEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKR 175
L +LV L++ I L + + + F P + I
Sbjct: 94 LGEKLVAAFFGLLIFPILNLVLTAFGLGLAWSMPAILSLATAVFLFMIPDIDIRRRAAAA 153
Query: 176 QSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAEL----SF 231
++ +A +DL+ +C GI Q+L A+ S L EL
Sbjct: 154 RAEFAQALSSYIDLVALCRRGGIGSTQSLEIAAQVGD------SWVFLRLDEELYEAGRS 207
Query: 232 LPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKA 291
A + + + + + + G S+ SLR + RS + + A
Sbjct: 208 GEAPWSALTRVSQQLGLAELGDLADIMTMTGDKGASVYTSLRAKAASLRSAQTSAEQSAA 267
Query: 292 ASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
KL +P+ + + +++ PA+ I
Sbjct: 268 VEATEKLAMPL-AGLAGLFMALLLIPAVTVI 297
>gi|309810754|ref|ZP_07704561.1| type II secretion system F domain protein [Dermacoccus sp.
Ellin185]
gi|308435291|gb|EFP59116.1| type II secretion system F domain protein [Dermacoccus sp.
Ellin185]
Length = 290
Score = 56.0 bits (134), Expect = 8e-06, Method: Composition-based stats.
Identities = 39/205 (19%), Positives = 72/205 (35%), Gaps = 17/205 (8%)
Query: 88 NLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQ 147
L+ + L +G + + L+ L + LG +
Sbjct: 32 GLRRSRRYAAVRELLDQSGLV-TWRVRTLVAACLGAATVAFCLGFV------------IT 78
Query: 148 LRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRV 207
+++ VG AP+ ++ + + AWPDA+D + V +G+SI +ALR++
Sbjct: 79 GVPALAVVLACVGGWAPAAFVRGRATSLRRRRREAWPDAVDHVASAVRAGLSIPEALRQL 138
Query: 208 AEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTS 267
+ L E+ + + + R ++L + G S
Sbjct: 139 S---LHGPEVLREDFAAFARHDAAHGRFDDSLDVLKARLADPAADRLIESLRLARNVGGS 195
Query: 268 -IGDSLRVLVSETRSERLMEAEKKA 291
+G LR L S R + AE A
Sbjct: 196 DVGRLLRTLSSFLREDASTRAELAA 220
>gi|226196404|ref|ZP_03791986.1| type II secretion system protein [Burkholderia pseudomallei
Pakistan 9]
gi|225931621|gb|EEH27626.1| type II secretion system protein [Burkholderia pseudomallei
Pakistan 9]
Length = 316
Score = 56.0 bits (134), Expect = 8e-06, Method: Composition-based stats.
Identities = 33/165 (20%), Positives = 55/165 (33%), Gaps = 7/165 (4%)
Query: 163 APSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEM 222
W+ + +QKR+ I R P LD ++ V G S+ A + + PL +
Sbjct: 126 LAVFWLVSRMQKRRLRIVRQLPSFLDGIVRLVTLGNSVPAAFQ---ATLQTTEAPLRGCL 182
Query: 223 LLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSE 282
L A + ++ L S +YG L + R
Sbjct: 183 DHVSRMLRSGVEIDRAMVSIAALYRIKEFELVGSVLRLSVKYGGRADVMLDRMAVFMRDL 242
Query: 283 RLMEAEKKAASLGPKLTVPMIIFFLPV---LILVIIGPAILSIID 324
E E A S +L+ ++ LPV ++ P S +
Sbjct: 243 EQAERELVAMSAETRLSA-WVLGALPVGIGSFVIATNPKYFSAMW 286
>gi|167620220|ref|ZP_02388851.1| hypothetical protein BthaB_28195 [Burkholderia thailandensis Bt4]
Length = 242
Score = 56.0 bits (134), Expect = 8e-06, Method: Composition-based stats.
Identities = 35/180 (19%), Positives = 56/180 (31%), Gaps = 12/180 (6%)
Query: 121 LVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIK 180
LV +W LL GA +++ W+++ +QKR+ I
Sbjct: 19 LVALGAVTAFATLWAGLRGGLLAAVAAFVAGATLVV---------FWLASRMQKRRLRIV 69
Query: 181 RAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFE 240
R P LD ++ V G S+ A + + PL + L A
Sbjct: 70 RQLPSFLDGIVRLVTLGNSVPAAFQ---ATLQTTDAPLRGCLDHVSRMLRSGVEIDRAMV 126
Query: 241 NFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV 300
++ L S +YG L + R E E A S +L+
Sbjct: 127 YVAALYRIKEFELVGSVLRLSVKYGGRADVMLDRMAVFMRDLEQAERELVAMSAETRLSA 186
>gi|197302281|ref|ZP_03167340.1| hypothetical protein RUMLAC_01008 [Ruminococcus lactaris ATCC
29176]
gi|197298712|gb|EDY33253.1| hypothetical protein RUMLAC_01008 [Ruminococcus lactaris ATCC
29176]
Length = 197
Score = 56.0 bits (134), Expect = 8e-06, Method: Composition-based stats.
Identities = 22/147 (14%), Positives = 56/147 (38%), Gaps = 11/147 (7%)
Query: 167 WISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVP---LSEEML 223
W+ + K++ + + D++ ++ +++G S + A+R D+ + +E
Sbjct: 4 WLEEMTDKKEEEFRVQFKDSIQIMAGALKAGYSAENAIRETCHDLKPMYKSESRIIKEYE 63
Query: 224 LTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTS----IGDSLRVLVSET 279
+ I +L F + + V N + + G I D+++V+ +
Sbjct: 64 IMIRKLKIHIPVGQVLSEFAENVEQEDVDNFVTVFTTAQKSGGDSIVIIKDAVKVISEKM 123
Query: 280 RSERLMEAEKKAASLGPKLTVPMIIFF 306
+E+ E + KL ++
Sbjct: 124 ETEK----EIQTMIASKKLEFEIMSMI 146
>gi|167748318|ref|ZP_02420445.1| hypothetical protein ANACAC_03062 [Anaerostipes caccae DSM 14662]
gi|167652310|gb|EDR96439.1| hypothetical protein ANACAC_03062 [Anaerostipes caccae DSM 14662]
Length = 259
Score = 56.0 bits (134), Expect = 8e-06, Method: Composition-based stats.
Identities = 38/211 (18%), Positives = 80/211 (37%), Gaps = 20/211 (9%)
Query: 124 PIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAW 183
++ G+I F L L + + FC P + ++R+ I+++
Sbjct: 26 AVLKAAQGMILFFIICYLFYDRIWLGILYAV------FCFP-YMLYQAREERKMRIRQSR 78
Query: 184 PDALDLLLI---CVESGISIDQALRRVAEDIGGQSVP----LSEEMLLTIAELSFLPNRQ 236
+ ++LL + +G S++ A+R +D+ + L +E+ L A L +
Sbjct: 79 LEFKEMLLSVYNSLSAGYSLENAVRAARDDMRAVNGDKKSVLEQELSLVCAGLEVNQPIE 138
Query: 237 VAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKK----AA 292
V + R +D Q L R G ++ ++ V + ++ E A
Sbjct: 139 VLMDKMALRLGVDEASQFAQVLWIIKRNGGNLIQIIKKSVEHMNQKIQVKEEILTMVSAK 198
Query: 293 SLGPKLTVPMIIFFLPVLILVIIGPAILSII 323
+ K+ M F L L + ++ P ++
Sbjct: 199 RMEQKIMSVMPFFIL--LYVRLMNPGYFQVL 227
>gi|167919155|ref|ZP_02506246.1| type II secretion system protein [Burkholderia pseudomallei BCC215]
Length = 256
Score = 56.0 bits (134), Expect = 8e-06, Method: Composition-based stats.
Identities = 33/165 (20%), Positives = 55/165 (33%), Gaps = 7/165 (4%)
Query: 163 APSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEM 222
W+ + +QKR+ I R P LD ++ V G S+ A + + PL +
Sbjct: 66 LAVFWLVSRMQKRRLRIVRQLPSFLDGIVRLVTLGNSVPAAFQ---ATLQTTEAPLRGCL 122
Query: 223 LLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSE 282
L A + ++ L S +YG L + R
Sbjct: 123 DHVSRMLRSGVEIDRAMVSIAALYRIKEFELVGSVLRLSVKYGGRADVMLDRMAVFMRDL 182
Query: 283 RLMEAEKKAASLGPKLTVPMIIFFLPV---LILVIIGPAILSIID 324
E E A S +L+ ++ LPV ++ P S +
Sbjct: 183 EQAERELVAMSAETRLSA-WVLGALPVGIGSFVIATNPKYFSAMW 226
>gi|126179945|ref|YP_001047910.1| type II secretion system protein [Methanoculleus marisnigri JR1]
gi|125862739|gb|ABN57928.1| type II secretion system protein [Methanoculleus marisnigri JR1]
Length = 307
Score = 56.0 bits (134), Expect = 8e-06, Method: Composition-based stats.
Identities = 29/186 (15%), Positives = 68/186 (36%), Gaps = 8/186 (4%)
Query: 132 IIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLL 191
+++ K+L + V ++++ G + + ++ +R+ +I P A++ +
Sbjct: 83 VLYALNDYKMLLGTVAITVISLLVFGGITYLIYLLYPGIKAGERRRNIDATLPYAINYVT 142
Query: 192 ICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELS-FLPNRQVAFENFYNRTQMDC 250
+GI+ D+ R + + + E E F + A T +
Sbjct: 143 AMSSAGITPDEVFRLLGQ--STIYGESAVEARYISRETDFFGKDLLDALRTVSQATPSER 200
Query: 251 VRNATQALIQSDRYGTSIGDSLRVLVS----ETRSERLMEAEKKAASLGPKLTVPMIIFF 306
+R Q + S G+++ + R E ++ E +T M+
Sbjct: 201 MREFLQGAVASISSGSNLTEYFRNKAHQYTLENNQQQKSFLETLGLIAESYVTA-MVAGM 259
Query: 307 LPVLIL 312
L ++IL
Sbjct: 260 LFLIIL 265
>gi|323694363|ref|ZP_08108536.1| hypothetical protein HMPREF9475_03400 [Clostridium symbiosum
WAL-14673]
gi|323501603|gb|EGB17492.1| hypothetical protein HMPREF9475_03400 [Clostridium symbiosum
WAL-14673]
Length = 257
Score = 55.7 bits (133), Expect = 9e-06, Method: Composition-based stats.
Identities = 31/151 (20%), Positives = 62/151 (41%), Gaps = 4/151 (2%)
Query: 142 LEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISID 201
Y F A +L V F P L +RQ ++R + +A+ +L + +G S++
Sbjct: 39 TAYVFYRSFTAFLLFLPVSFLYPLAKKKELALQRQEELRRQFKEAVLILSSSLGAGYSVE 98
Query: 202 QALR---RVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQAL 258
A R E++ G+ +++E +L + F +R+ ++ ++N +
Sbjct: 99 NAFAGSLRELEELYGREGMITKEFSYIAHQLRMNRTVETLLAEFADRSGLEEIKNFSDIF 158
Query: 259 IQSDRYGTSIGDSLRVLVSETRSERLMEAEK 289
S R + + V S+RL E+
Sbjct: 159 AVSKRSRGELVSVVNHTVHVI-SDRLQVREE 188
>gi|227871817|ref|ZP_03990219.1| type II secretion system protein [Oribacterium sinus F0268]
gi|227842318|gb|EEJ52546.1| type II secretion system protein [Oribacterium sinus F0268]
Length = 224
Score = 55.7 bits (133), Expect = 9e-06, Method: Composition-based stats.
Identities = 30/145 (20%), Positives = 61/145 (42%), Gaps = 3/145 (2%)
Query: 141 LLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISI 200
L Y F + +L+ F P + L +KRQ + + + L +L + +G S+
Sbjct: 5 LFSYAFYQHILFFLLLLPFSFFYPFLQRDKLRKKRQEVLVSQFKEMLSILSAYLSAGYSL 64
Query: 201 DQALRRVA---EDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQA 257
+ AL E++ G+ + EE+ LS + A F R+ +D + N ++
Sbjct: 65 ENALFACIPDLENLLGKKCYMVEELKQIKRSLSMNRPLEEALSQFALRSGVDDIHNFSEI 124
Query: 258 LIQSDRYGTSIGDSLRVLVSETRSE 282
+ + R G + ++ + R +
Sbjct: 125 FLVAKRSGGDLIQIIQQSSTIIRDK 149
>gi|251795114|ref|YP_003009845.1| hypothetical protein Pjdr2_1079 [Paenibacillus sp. JDR-2]
gi|247542740|gb|ACS99758.1| hypothetical protein Pjdr2_1079 [Paenibacillus sp. JDR-2]
Length = 311
Score = 55.7 bits (133), Expect = 9e-06, Method: Composition-based stats.
Identities = 36/169 (21%), Positives = 64/169 (37%), Gaps = 8/169 (4%)
Query: 146 FQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLIC--VESGISIDQA 203
F + +L G V C P + ++ +RQ ++ + A++L C V G + A
Sbjct: 98 FFQSIKGTLLFGLVVGCLPYTILRAMLVQRQMQLQMDFLPAIELFYQCYLVTGGRQVRTA 157
Query: 204 LRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDR 263
L+R E+ P+ LS + + + F + +
Sbjct: 158 LQRTVEE-RRLLGPMQSVFEQLYRNLSVRGDDEASLRIFSAALGHVWGDYFVNIMRVALA 216
Query: 264 YGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLIL 312
G+ I +SL+ L+ + R R +++ KL I F PVL L
Sbjct: 217 EGSPIAESLKELLGDMRKARRANEQERN-----KLLEIRIANFTPVLFL 260
>gi|325678292|ref|ZP_08157920.1| type II secretion system protein F domain protein [Ruminococcus
albus 8]
gi|324110055|gb|EGC04243.1| type II secretion system protein F domain protein [Ruminococcus
albus 8]
Length = 303
Score = 55.7 bits (133), Expect = 9e-06, Method: Composition-based stats.
Identities = 38/216 (17%), Positives = 86/216 (39%), Gaps = 9/216 (4%)
Query: 107 FRSEYSLNILLVVRLV--VPIIFLILGIIW--IFGYDKLLEYPFQLRVGAVILIGYVGFC 162
+ S+ + VV + V + +L+ G + G + + + + + + G V F
Sbjct: 48 YMSKQQKLLFTVVSFIAGVAVAYLMYGGLGSDADGNPRPITHVLNIVICTAVGFGAVKFI 107
Query: 163 APSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDI---GGQSVPLS 219
P + S +++R + I+R + D LD L V SG + +A ED+ G+ +
Sbjct: 108 IPLLESSFKIKRR-NDIRRQFMDLLDALAASVASGSNAIKAFEAAKEDLVLQYGEDSIIV 166
Query: 220 EEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSET 279
+E+ L + + + +F R+ + + + Q S R G +R E
Sbjct: 167 QELTLILDGQKNFIDISASLIDFGKRSGIKEIESFAQVFELSHRKGGDFSKVIRD-SYEI 225
Query: 280 RSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVII 315
++ + + I+ +P +++ ++
Sbjct: 226 LYSKINIEMEIETKIAATRNELNIMLAMPFILVGMM 261
>gi|167902895|ref|ZP_02490100.1| type II secretion system protein [Burkholderia pseudomallei NCTC
13177]
Length = 264
Score = 55.7 bits (133), Expect = 9e-06, Method: Composition-based stats.
Identities = 33/165 (20%), Positives = 55/165 (33%), Gaps = 7/165 (4%)
Query: 163 APSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEM 222
W+ + +QKR+ I R P LD ++ V G S+ A + + PL +
Sbjct: 74 LAVFWLVSRMQKRRLRIVRQLPSFLDGIVRLVTLGNSVPAAFQ---ATLQTTEAPLRGCL 130
Query: 223 LLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSE 282
L A + ++ L S +YG L + R
Sbjct: 131 DHVSRMLRSGVEIDRAMVSIAALYRIKEFELVGSVLRLSVKYGGRADVMLDRMAVFMRDL 190
Query: 283 RLMEAEKKAASLGPKLTVPMIIFFLPV---LILVIIGPAILSIID 324
E E A S +L+ ++ LPV ++ P S +
Sbjct: 191 EQAERELVAMSAETRLSA-WVLGALPVGIGSFVIATNPKYFSAMW 234
>gi|163801323|ref|ZP_02195222.1| Flp pilus assembly protein TadB [Vibrio sp. AND4]
gi|159174812|gb|EDP59612.1| Flp pilus assembly protein TadB [Vibrio sp. AND4]
Length = 289
Score = 55.7 bits (133), Expect = 1e-05, Method: Composition-based stats.
Identities = 34/211 (16%), Positives = 72/211 (34%), Gaps = 12/211 (5%)
Query: 107 FRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLR-VGAVILIGYVGFCAPS 165
+ S+ L I + + + I++ + + F L + +IL+G V
Sbjct: 40 YLSQNILVIFFEIYGLGTFVMHCGVILFYVSFMFFVSSTFDLSYLSTLILVGIVVSLGCF 99
Query: 166 VWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLT 225
+ K + + + +L ++ + SG +I ++ + G+ E
Sbjct: 100 SILKEYHAKLSNYFEDKFAFSLRMISRNLISGRTIAASIESASRHTMGKIRI---EFERI 156
Query: 226 IAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSE------T 279
I +++ + A N + + S + G SI DSL L +
Sbjct: 157 IKQINAGNTLEEALTTGENIYPYKGYTVFSANVKMSLKRGGSIKDSLDELAQDLVASQVI 216
Query: 280 RSERLMEAEKKAASLGPKLTVPMIIFFLPVL 310
R + L + + K+ + L VL
Sbjct: 217 RKKTLSLTSE--SRGAAKILAVLPFIMLLVL 245
>gi|228918238|ref|ZP_04081739.1| hypothetical protein bthur0012_54160 [Bacillus thuringiensis
serovar pulsiensis BGSC 4CC1]
gi|228841415|gb|EEM86557.1| hypothetical protein bthur0012_54160 [Bacillus thuringiensis
serovar pulsiensis BGSC 4CC1]
Length = 210
Score = 55.7 bits (133), Expect = 1e-05, Method: Composition-based stats.
Identities = 43/215 (20%), Positives = 88/215 (40%), Gaps = 18/215 (8%)
Query: 116 LLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKR 175
L +++ P+IF + +I +D L +LI + + P + +++
Sbjct: 8 YLKMKVAYPVIFTSVFLICTVFHDYYL-------FKVGVLISPLLYFYPDYLLKKRIKQA 60
Query: 176 QSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNR 235
+ K P+ L +L +++ +++ + A+ G+ L + AEL
Sbjct: 61 IEARKFELPEYLIPMLQLLKTHTTLEA--VKKAQIYAGRH--LRPYVSTLTAELEMYAGS 116
Query: 236 QVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLG 295
F NF V T AL Q+ + T SLR++ ++ + R ++ E +
Sbjct: 117 DQPFRNFAAALNSPEVNTFTIALQQAQK--TDKVQSLRIMDAQIKMMRELKHENYNRLIQ 174
Query: 296 PKLTVPMII--FFLPVLILVIIGPAILSIIDTMKD 328
K PM + F + V+ ++I P ++ I M+
Sbjct: 175 NK---PMEMNKFNVAVIGCIVIYPMVIVIQSLMQG 206
>gi|119719687|ref|YP_920182.1| type II secretion system protein [Thermofilum pendens Hrk 5]
gi|119524807|gb|ABL78179.1| type II secretion system protein [Thermofilum pendens Hrk 5]
Length = 284
Score = 55.7 bits (133), Expect = 1e-05, Method: Composition-based stats.
Identities = 36/234 (15%), Positives = 78/234 (33%), Gaps = 18/234 (7%)
Query: 103 RAAGFRSEYSLNILLVVRLVVPII-------FLILGIIWIFGYDKLLEYPFQLRVGAVIL 155
AGF + +SL + + R +V + + + F L V A +L
Sbjct: 24 VKAGFETPFSLYVSYLSRALVAVGAAVFAASLAVHLFLLRFAVPLAFAASVTLTVLAEVL 83
Query: 156 IGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQS 215
+ +V P V R+ +I++ P + SG+ +++ L R + +
Sbjct: 84 VVFVALYYPVY----RVYSRRITIEKDLPFTASYMAALSSSGMGLERLLERAV--LYESN 137
Query: 216 VPLSEEMLLTIAELSF-LPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRV 274
+ E+ L + ++ + A R+ + L ++ + L
Sbjct: 138 KEIKREIALILRDIKAYGLDTLTALSRAALRSPSRSLAMLWLGLRETYITSGNFKSYLSH 197
Query: 275 LVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMKD 328
SE+ + ++ V + L+ V + L I+D +
Sbjct: 198 FSGVLLSEKTQSLRRVTNTISMMAEVYTTLMVAAPLMFVTM----LVIMDMLGG 247
>gi|261409011|ref|YP_003245252.1| Type II secretion system F domain-containing protein [Paenibacillus
sp. Y412MC10]
gi|261285474|gb|ACX67445.1| Type II secretion system F domain protein [Paenibacillus sp.
Y412MC10]
Length = 285
Score = 55.7 bits (133), Expect = 1e-05, Method: Composition-based stats.
Identities = 23/122 (18%), Positives = 51/122 (41%), Gaps = 4/122 (3%)
Query: 162 CAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSV----P 217
P +W ++++R+ ++ + AL L + +G S++ R +D+
Sbjct: 87 MIPKLWRRFMLERRRRTLNLHFKQALYSLSSSLSAGRSVENGFRDAVQDLLLLDPGGSSD 146
Query: 218 LSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVS 277
L E+ + ++ L + +VA ++F R M+ + N R G + + +R S
Sbjct: 147 LIFELKVIVSRLEYGEPIEVALQDFARRAGMEDLTNFADVFSTCKRTGGDLVEVVRRTSS 206
Query: 278 ET 279
Sbjct: 207 VI 208
>gi|307325196|ref|ZP_07604399.1| Type II secretion system F domain protein [Streptomyces
violaceusniger Tu 4113]
gi|306889000|gb|EFN19983.1| Type II secretion system F domain protein [Streptomyces
violaceusniger Tu 4113]
Length = 299
Score = 55.7 bits (133), Expect = 1e-05, Method: Composition-based stats.
Identities = 27/172 (15%), Positives = 63/172 (36%), Gaps = 6/172 (3%)
Query: 132 IIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLL 191
+ + + + + + ++ V F P + + +R+ ++ LDL +
Sbjct: 108 AVALARVGTGADAGWWMPLAGSLVFAGVLFFLPDITVRKAAAERRRQMRHTLTLILDLTV 167
Query: 192 ICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTI--AELSFLPNRQVAFENFYNRTQMD 249
I + G + QAL + + + ++ + A+L+ Q + Q+
Sbjct: 168 ISLAGGAGVQQAL---TDAVQAPHGWAASKLRHALRVAQLTRTSPWQH-LGDLGQHLQVS 223
Query: 250 CVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVP 301
+ L + G + SL R RL EA+ A + ++++P
Sbjct: 224 DLTELAATLSLAGTEGAKVRASLAAKARAMRRRRLSEADGAAQAATEQMSLP 275
>gi|167760286|ref|ZP_02432413.1| hypothetical protein CLOSCI_02659 [Clostridium scindens ATCC 35704]
gi|167662169|gb|EDS06299.1| hypothetical protein CLOSCI_02659 [Clostridium scindens ATCC 35704]
Length = 238
Score = 55.7 bits (133), Expect = 1e-05, Method: Composition-based stats.
Identities = 22/168 (13%), Positives = 61/168 (36%), Gaps = 4/168 (2%)
Query: 165 SVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVP---LSEE 221
+ + +K+ + +A+ + + +G S++ AL +++ +S E
Sbjct: 43 KMMAEEVARKKDQEFLLQFKEAIQAMASALNTGYSVENALLEAQKELRLLYPEDARISRE 102
Query: 222 MLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRS 281
L+ +L + E F R+ + V N + + G + +R ++
Sbjct: 103 FLVMARQLRLHVPMEQILEEFAGRSGQEDVENFVAVFAAARKSGGDMISIIRNTANQIGD 162
Query: 282 ERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMKDH 329
+ ++ E K ++ P I+ + + +D++ +
Sbjct: 163 KIDVKREIDTVLAAKKYEFRVMAAI-PYAIIGYMSLSFPEFMDSLYGN 209
>gi|229492933|ref|ZP_04386729.1| bacterial type II secretion system protein F domain protein
[Rhodococcus erythropolis SK121]
gi|229320207|gb|EEN86032.1| bacterial type II secretion system protein F domain protein
[Rhodococcus erythropolis SK121]
Length = 299
Score = 55.7 bits (133), Expect = 1e-05, Method: Composition-based stats.
Identities = 35/208 (16%), Positives = 69/208 (33%), Gaps = 12/208 (5%)
Query: 117 LVVRLVVPIIFLILGIIWIFGYDKL-LEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKR 175
L +LV L++ I L + + + F P + I
Sbjct: 94 LGEKLVAAFFGLLIFPILNLVLTAFGLGLAWSMPAILSLATAVFLFMIPDIDIRRRAAAA 153
Query: 176 QSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAEL----SF 231
++ +A +DL+ +C G+ Q+L A+ S L EL
Sbjct: 154 RAEFAQALSSYIDLVALCRRGGVGSTQSLEIAAQVGD------SWVFLRLDEELYEAGRS 207
Query: 232 LPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKA 291
A + + + + + + G S+ SLR + RS + + A
Sbjct: 208 GEAPWSALTRVSQQLGLAELGDLADIMTMTGDKGASVYTSLRAKAASLRSAQTSAEQSAA 267
Query: 292 ASLGPKLTVPMIIFFLPVLILVIIGPAI 319
KL +P+ + + +++ PA+
Sbjct: 268 VEATEKLAMPL-AGLAGLFMALLLIPAV 294
>gi|329765280|ref|ZP_08256860.1| Flp pilus assembly protein TadC [Candidatus Nitrosoarchaeum limnia
SFB1]
gi|329138186|gb|EGG42442.1| Flp pilus assembly protein TadC [Candidatus Nitrosoarchaeum limnia
SFB1]
Length = 304
Score = 55.3 bits (132), Expect = 1e-05, Method: Composition-based stats.
Identities = 31/191 (16%), Positives = 74/191 (38%), Gaps = 4/191 (2%)
Query: 134 WIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLIC 193
++ ++EY G V+++ G + V+ R + + P + +
Sbjct: 80 FVSIQPVIIEYLLPPIAGMVLMLMTFGIL--QIIPIARVKNRATKLLEEIPHFIGYMSTL 137
Query: 194 VESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRN 253
SG+S+++ + +A++ + + + E+ + A ++ NRT
Sbjct: 138 ATSGLSLEEIFKAIAKEETDEDIVKDARFITRNIEI-LGMDLITAVKDLINRTPPGPYSE 196
Query: 254 ATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILV 313
+ I + + G + + E+ M +K SLG + I+ + L+ V
Sbjct: 197 LLEGAIITSQSGGDLKEYFNATAKVQLEEKKMLLQKTTESLGSVAEIYTILLIVFPLLAV 256
Query: 314 IIGPAILSIID 324
I+ +I+ I+
Sbjct: 257 IML-SIMGIMS 266
>gi|323525749|ref|YP_004227902.1| Type II secretion system F domain-containing protein [Burkholderia
sp. CCGE1001]
gi|323382751|gb|ADX54842.1| Type II secretion system F domain protein [Burkholderia sp.
CCGE1001]
Length = 386
Score = 55.3 bits (132), Expect = 1e-05, Method: Composition-based stats.
Identities = 33/162 (20%), Positives = 52/162 (32%), Gaps = 6/162 (3%)
Query: 148 LRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRV 207
+ V L G F S +R+ +I R P LD ++ + G S+ A +
Sbjct: 182 VLAAGVTLCGCAVFLY--FVTSMRASRRRQAIVRQLPSFLDGIVRLITLGNSVPAAFQ-- 237
Query: 208 AEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTS 267
+ PL E + L A + + L S +YG
Sbjct: 238 -ASLQITEAPLRECLDHVSRMLRSGVEIDRALSHVAVLYGARELELVGAVLRLSVKYGGR 296
Query: 268 IGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPV 309
L + S R E E A S +L+ ++ LP
Sbjct: 297 ADVMLDRMSSFMRDLEHAERELVAMSSETRLSS-WVLGMLPA 337
>gi|86742973|ref|YP_483373.1| type II secretion system protein [Frankia sp. CcI3]
gi|86569835|gb|ABD13644.1| type II secretion system protein [Frankia sp. CcI3]
Length = 448
Score = 55.3 bits (132), Expect = 1e-05, Method: Composition-based stats.
Identities = 40/173 (23%), Positives = 63/173 (36%), Gaps = 26/173 (15%)
Query: 177 SSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQ 236
+ +P ALDL+ C+ SG +I A R V GG L E+ L+
Sbjct: 276 NRFLADFPLALDLIAACLRSGETIMSAARAVGAATGG---VLGAELCSVGDALAAGATVG 332
Query: 237 VAFENF----------------YNRTQMD-------CVRNATQALIQSDRYGTSIGDSLR 273
A E R ++ VR A AL +++ G + +L
Sbjct: 333 AACERLVAASHAPRLTDRLPGWARRGRVTPPSRRARMVRAAIMALDRAEMSGAKLAATLT 392
Query: 274 VLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
L R E E+ A G P+ + FLP +L+ + P +L + +
Sbjct: 393 RLADRARDEAHAESIAAARRAGVLAVAPLGLCFLPAFLLLGVVPMVLGSVPAL 445
>gi|15668960|ref|NP_247764.1| hypothetical protein MJ_0779 [Methanocaldococcus jannaschii DSM
2661]
gi|2833584|sp|Q58189|Y779_METJA RecName: Full=Uncharacterized protein MJ0779
gi|1499599|gb|AAB98769.1| conserved hypothetical protein [Methanocaldococcus jannaschii DSM
2661]
Length = 299
Score = 55.3 bits (132), Expect = 1e-05, Method: Composition-based stats.
Identities = 28/191 (14%), Positives = 78/191 (40%), Gaps = 8/191 (4%)
Query: 139 DKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGI 198
L + + V++ PS+ N + +++ P AL ++++ +ESG
Sbjct: 47 SYYLHLTLKSMIIFVVIYVGAALFIPSILYENKI----ETLENNIPQALYIMILALESGR 102
Query: 199 SIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLP-NRQVAFENFYNRTQMDCVRNATQA 257
SI++AL V + +S+ + + + + + N +R +
Sbjct: 103 SINEALLEVVK---SNIKEVSDIFRKVLYLMENQKLSFEESMTIVSNLYDSKVLRMLARI 159
Query: 258 LIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGP 317
+I++ +YG + DSL++L ++ + + + + +I+ + + ++G
Sbjct: 160 MIENRKYGGDLSDSLKILAKTLEDFKMYKRQLLSVTASGLAIGFIILCGVIPAVAALLGA 219
Query: 318 AILSIIDTMKD 328
++++ +
Sbjct: 220 YLIAVSGMLSG 230
>gi|228918640|ref|ZP_04082073.1| hypothetical protein bthur0012_57730 [Bacillus thuringiensis
serovar pulsiensis BGSC 4CC1]
gi|228841014|gb|EEM86223.1| hypothetical protein bthur0012_57730 [Bacillus thuringiensis
serovar pulsiensis BGSC 4CC1]
Length = 210
Score = 55.3 bits (132), Expect = 1e-05, Method: Composition-based stats.
Identities = 43/215 (20%), Positives = 88/215 (40%), Gaps = 18/215 (8%)
Query: 116 LLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKR 175
L +++ P+IF + +I +D L +LI + + P + +++
Sbjct: 8 YLKMKVAYPVIFTSVFLICTVFHDYYL-------FKVGVLISPLLYFYPDYLLKKRIKQA 60
Query: 176 QSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNR 235
+ K P+ L +L +++ +++ + A+ G+ L + AEL
Sbjct: 61 IEARKFELPEYLIPMLQLLKTHTTLEA--VKKAQIYAGRH--LRPYVSTLTAELEMYAGS 116
Query: 236 QVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLG 295
F NF V T AL Q+ + T SLR++ ++ + R ++ E +
Sbjct: 117 DQPFRNFAAALNSPEVNTFTIALQQAQK--TDKVQSLRIMDAQIKMMRELKHENYNRLIQ 174
Query: 296 PKLTVPMII--FFLPVLILVIIGPAILSIIDTMKD 328
K PM + F + V+ ++I P ++ I M+
Sbjct: 175 NK---PMEMNKFNVAVIGCIVIYPMVIVIQSLMQG 206
>gi|299069495|emb|CBJ40764.1| Type II secretion system protein [Ralstonia solanacearum CMR15]
Length = 308
Score = 55.3 bits (132), Expect = 1e-05, Method: Composition-based stats.
Identities = 30/207 (14%), Positives = 75/207 (36%), Gaps = 16/207 (7%)
Query: 120 RLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSI 179
RL + ++ ++ + + L + V++ ++ + N ++ +
Sbjct: 83 RLYILLLGPLVALALLAWVMSGLLSAAMVVALYVLVAAFLFW--------NRTRRMNERL 134
Query: 180 KRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAF 239
+ P LD ++ + G ++ A + + PL + T + A
Sbjct: 135 MQQLPGFLDGVVRLMSIGSAVPAAFQAAS---ANTEPPLRTCLTSTTQLQRAGKDLDAAV 191
Query: 240 ENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLT 299
+++ + + L + RYG + + R + E A S +L+
Sbjct: 192 LAVGQLYRVNELILLSSVLRLALRYGGRADIVMERTAAFMRDREQAQKELLALSAETRLS 251
Query: 300 VPMIIFFLPV----LILVIIGPAILSI 322
I+ LPV +I+++ P ++S+
Sbjct: 252 A-WILGLLPVVVGGIIIMVNAPYVMSM 277
>gi|291557191|emb|CBL34308.1| hypothetical protein ES1_13170 [Eubacterium siraeum V10Sc8a]
Length = 290
Score = 55.3 bits (132), Expect = 1e-05, Method: Composition-based stats.
Identities = 35/248 (14%), Positives = 93/248 (37%), Gaps = 22/248 (8%)
Query: 84 VKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLE 143
+ K+ + + L++AG + + + + L I F
Sbjct: 60 LGKIIPMDKYKKSRLESTLKSAGI--KMTPETFTALAFLKAFCVAALAIPCAFF------ 111
Query: 144 YPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQA 203
L + I++ V + + +++++ +I++ P + + ++ +
Sbjct: 112 --MPLLIPFFIILAVVIYFRENGKADEKMREKRDAIEQELPRFVATVEQELK---TSRDV 166
Query: 204 LRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDR 263
L + V + E+ +T A++ + + A F R + + + L+ R
Sbjct: 167 LSIMENFKKHAGVHFAYELDVTCADMRS-SSYEAALTRFEARIGSAQLSDVVRGLVSVIR 225
Query: 264 YGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKL---TVPMIIFFLPVLILVIIGPAIL 320
G ++L + + L + KAA + PK+ + M++ FL ++V+ +
Sbjct: 226 -GDDSAVYFKMLAHDFKLIELQRLKAKAAKIPPKIRIFSFGMLMLFLLTYLVVMG----M 280
Query: 321 SIIDTMKD 328
++D++
Sbjct: 281 QLLDSLGS 288
>gi|309777430|ref|ZP_07672388.1| putative bacterial type II secretion system protein F domain
protein [Erysipelotrichaceae bacterium 3_1_53]
gi|308914826|gb|EFP60608.1| putative bacterial type II secretion system protein F domain
protein [Erysipelotrichaceae bacterium 3_1_53]
Length = 266
Score = 55.3 bits (132), Expect = 1e-05, Method: Composition-based stats.
Identities = 32/199 (16%), Positives = 81/199 (40%), Gaps = 11/199 (5%)
Query: 120 RLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSI 179
+ +I ++LG+I + F + + GF A V+ ++ +KR +
Sbjct: 35 KAGACMIGMLLGVICGHIF-------FANILMDFLTGCLTGFIAVPVFRNHQNEKRSIEL 87
Query: 180 KRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVP---LSEEMLLTIAELSFLPNRQ 236
R + D L+ L + +G+++ +++ + Q + +E+ + + N +
Sbjct: 88 SRQFKDMLENLAASISAGVNVPDSIKSAYHSMQQQYDENAYIVKELHNILIGFNNNINIE 147
Query: 237 VAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGP 296
+F NR+ + + + S R G ++ + +R + +E E K
Sbjct: 148 TMLLDFGNRSGNEDIISFANTFETSYRKGGNMKEIIRNTYEILNDKITIEMEVKTMIAAS 207
Query: 297 KLTVPMIIFFLPVLILVII 315
+ + +++ PVL +++
Sbjct: 208 RNELNIMMCM-PVLFSLVL 225
>gi|27365655|ref|NP_761183.1| Flp pilus assembly protein TadB [Vibrio vulnificus CMCP6]
gi|27361803|gb|AAO10710.1| Flp pilus assembly protein TadB [Vibrio vulnificus CMCP6]
Length = 294
Score = 55.3 bits (132), Expect = 1e-05, Method: Composition-based stats.
Identities = 32/187 (17%), Positives = 62/187 (33%), Gaps = 3/187 (1%)
Query: 132 IIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLL 191
++ G L + +IL+ + + + Q + PD +D +
Sbjct: 72 VMLTVGLFITLLSQGMAPLTTLILVVVISVMMTVLAFRHFEQLAINEFSMQMPDIIDSME 131
Query: 192 ICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCV 251
V+ G + ++E G + L L L + + + +
Sbjct: 132 RAVKVGAPLHDIFFALSEQYQGSAKRL---FLAMHDRLKLGHSVERVMQFAAQQMPSQEF 188
Query: 252 RNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLI 311
R T L G + L+ L R LME+ + + + + ++ PVLI
Sbjct: 189 RFLTTLLSLQSETGGKLSHMLKQLGQTLRERSLMESRVRTITSESRTSAKVLAILPPVLI 248
Query: 312 LVIIGPA 318
V+ G A
Sbjct: 249 GVLYGSA 255
>gi|21227039|ref|NP_632961.1| putative flagella-like protein J [Methanosarcina mazei Go1]
gi|20905361|gb|AAM30633.1| putative flagella related protein J [Methanosarcina mazei Go1]
Length = 649
Score = 55.3 bits (132), Expect = 1e-05, Method: Composition-based stats.
Identities = 44/288 (15%), Positives = 100/288 (34%), Gaps = 18/288 (6%)
Query: 5 FFDLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQ 64
D T+L V + A+ ++I+ V + L E + ++QI++++
Sbjct: 283 MIDNGGPTQLYVLVYGAIPFGTMIFLVFLDMLTGDA------------EKMPEEQISAIR 330
Query: 65 KDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVP 124
DS S ++ ++K+ + + L R+ + V
Sbjct: 331 PDSFSDVRVKPLTEVDEELLQKMEFFEKV--SRVKRVLLHP-IRAMIDRPVYAFVVSAPV 387
Query: 125 IIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWP 184
+ + G + + + P + L +R I+ P
Sbjct: 388 ALGYFVSAYMEHGPYYGGFVETASTLDDYLYATLLILFIPYIIFHELEVRRIRQIEDQVP 447
Query: 185 DALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYN 244
+ L L +GI + A+ A+ G+ L E+ T+A++ + N A + F
Sbjct: 448 EFLKRLASINGTGILLADAIAITAQSNMGR---LKSEIKRTVADIRWNSNLVDAMKRFEA 504
Query: 245 RTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAA 292
R + + R + + ++ I + + + E+ ++ E+ A
Sbjct: 505 RIRTNMTRRSLSLIAKASESTGDIHQVISTVADDADIEKNLKKERSAE 552
Score = 48.3 bits (114), Expect = 0.002, Method: Composition-based stats.
Identities = 38/220 (17%), Positives = 82/220 (37%), Gaps = 21/220 (9%)
Query: 108 RSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVW 167
R ++ + +P I ++G I +F L Y G + P
Sbjct: 86 RVTRAVETPAFIESHLPFILTVIGGIILFSMISALTY------------GLIMAYPP--- 130
Query: 168 ISNLVQKRQSSIKRAWPDALDLLLICVESG-ISIDQALRRVAEDIGGQSVPLSEEMLLTI 226
R+ +I + P A L + G ++I ++ +++ + E +
Sbjct: 131 --MKADSRKRAINASMPHATAFLYVLQRGGGMTIYDIMKSLSKH-SHLYGTTAREFGNIV 187
Query: 227 AELS-FLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLM 285
++ F + Q + + +RT + ++ LI G I L+ +S
Sbjct: 188 RDIEYFGKDLQDSLWDSADRTPSEQFKDLVDGLISIVSSGGDITLYLKNKTDLYKSNANK 247
Query: 286 EAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDT 325
E ++ +LG V + +F + L L++I ++++ID
Sbjct: 248 EHKRFLETLGLLAEVYITVFVVGPLFLMVIL-VVMNMIDN 286
>gi|312199822|ref|YP_004019883.1| type II secretion system F [Frankia sp. EuI1c]
gi|311231158|gb|ADP84013.1| Type II secretion system F domain protein [Frankia sp. EuI1c]
Length = 285
Score = 55.3 bits (132), Expect = 1e-05, Method: Composition-based stats.
Identities = 34/197 (17%), Positives = 65/197 (32%), Gaps = 23/197 (11%)
Query: 96 ENIVNKLRAAGFRS---EYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGA 152
+ L AG R + + + + +VV + + W G+ + F
Sbjct: 34 RSTTELLAQAGVRGLGPGQFVAVSVAIGVVVGFVIFAVTATWSLGFAFFVFAAF------ 87
Query: 153 VILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIG 212
P ++ + R + ++ WPD +D L V +G+S+ + L V +
Sbjct: 88 ----------LPRTLVARRRRARMADLRGMWPDVVDNLASAVRAGMSLPEGLAAVGQR-- 135
Query: 213 GQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRY-GTSIGDS 271
PL E + + + ++L + GT +G
Sbjct: 136 -GPAPLRGAFTRFGEEYRASGSFSSCLDKLADELADPVADRIIESLRLAREVGGTDLGRL 194
Query: 272 LRVLVSETRSERLMEAE 288
LR L + R + AE
Sbjct: 195 LRTLSTFLREDARTRAE 211
>gi|238027559|ref|YP_002911790.1| Flp pilus assembly protein TadB [Burkholderia glumae BGR1]
gi|237876753|gb|ACR29086.1| Flp pilus assembly protein TadB [Burkholderia glumae BGR1]
Length = 338
Score = 55.3 bits (132), Expect = 1e-05, Method: Composition-based stats.
Identities = 29/146 (19%), Positives = 52/146 (35%), Gaps = 4/146 (2%)
Query: 166 VWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLT 225
+W+ + R+ I + P LD ++ V G S+ A + +G +PL +
Sbjct: 151 LWVLRRISARRLKIVQQLPSFLDGVVRLVTLGNSVPAAFQGA---LGTTEMPLRRCLDQV 207
Query: 226 IAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLM 285
L A + ++ L S +YG L + + R
Sbjct: 208 SRMLRTGVEIDRAMLHIAKEYRVREFELVGSVLRLSVKYGGRADVMLERMATFMRDLEQA 267
Query: 286 EAEKKAASLGPKLTVPMIIFFLPVLI 311
E E A S +L+ ++ LPV +
Sbjct: 268 ERELHAMSAETRLSA-WVLGLLPVAV 292
>gi|289449641|ref|YP_003475052.1| hypothetical protein HMPREF0868_0732 [Clostridiales genomosp. BVAB3
str. UPII9-5]
gi|289184188|gb|ADC90613.1| conserved hypothetical protein [Clostridiales genomosp. BVAB3 str.
UPII9-5]
Length = 545
Score = 55.3 bits (132), Expect = 1e-05, Method: Composition-based stats.
Identities = 29/204 (14%), Positives = 66/204 (32%), Gaps = 8/204 (3%)
Query: 117 LVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQ 176
++PI + I + Y + L I + + P + +
Sbjct: 343 FFCATLLPIFLIGCSITGLLLYG--MNTGLWLFPFGGIGLVLLFMQQPK----QKAELCR 396
Query: 177 SSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQ 236
+ +P L+ + SG +AL G++ L + A++ N
Sbjct: 397 CDLINKFPFFAGLINALLNSGFVPYRALEISINLYAGETDVLGNALRKINADMRRGENYC 456
Query: 237 VAFENFYNRTQMDCVRNATQALIQ-SDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLG 295
+ + + +++A + Q + + L V + K
Sbjct: 457 RGLVDLAKHSYVPEIQSALNLINQYAIQGNGQALTLLAVQCNTCWQLSRNTMRKYREKST 516
Query: 296 PKLTVPMIIFFLPVLILVIIGPAI 319
K+ +PM++ L +I++ + P I
Sbjct: 517 FKILIPMMLN-LISIIILTVAPVI 539
>gi|319795782|ref|YP_004157422.1| type II secretion system f domain [Variovorax paradoxus EPS]
gi|315598245|gb|ADU39311.1| Type II secretion system F domain [Variovorax paradoxus EPS]
Length = 330
Score = 55.3 bits (132), Expect = 1e-05, Method: Composition-based stats.
Identities = 37/219 (16%), Positives = 71/219 (32%), Gaps = 15/219 (6%)
Query: 110 EYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWIS 169
L ++ R V LIL + + G + + V++ + +
Sbjct: 95 PDWLVGVVRARTAVIAAVLILMMCALVGSFAGWLAAGGVLLLLVLVASFA--------LW 146
Query: 170 NLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAEL 229
+QK + + P +D ++ + G S A + I PL + + +
Sbjct: 147 LRLQKFRRQLVSQLPAYIDSMVRLITIGNSTQAAFQLA---IANCEPPLRGYLDRAASLV 203
Query: 230 SFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEK 289
+ A +++ + L RYG L + + R E E
Sbjct: 204 RAGVDLDRALHQTAVSVRIEEMYLLASILGLGVRYGGRADLLLERVANFMRDREQAEHEL 263
Query: 290 KAASLGPKLTVPMIIFFLPV---LILVIIGPAILSIIDT 325
A S +L+ I+ LPV L+I P+ +
Sbjct: 264 VAMSSETRLSA-WILGLLPVGVCTFLMISNPSYFMGLWN 301
>gi|167738782|ref|ZP_02411556.1| type II secretion system protein [Burkholderia pseudomallei 14]
gi|167824381|ref|ZP_02455852.1| type II secretion system protein [Burkholderia pseudomallei 9]
gi|167911132|ref|ZP_02498223.1| type II secretion system protein [Burkholderia pseudomallei 112]
Length = 211
Score = 55.3 bits (132), Expect = 1e-05, Method: Composition-based stats.
Identities = 28/138 (20%), Positives = 45/138 (32%), Gaps = 3/138 (2%)
Query: 163 APSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEM 222
W+ + +QKR+ I R P LD ++ V G S+ A + + PL +
Sbjct: 21 LAVFWLVSRMQKRRLRIVRQLPSFLDGIVRLVTLGNSVPAAFQ---ATLQTTEAPLRGCL 77
Query: 223 LLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSE 282
L A + ++ L S +YG L + R
Sbjct: 78 DHVSRMLRSGVEIDRAMVSIAALYRIKEFELVGSVLRLSVKYGGRADVMLDRMAVFMRDL 137
Query: 283 RLMEAEKKAASLGPKLTV 300
E E A S +L+
Sbjct: 138 EQAERELVAMSAETRLSA 155
>gi|29826727|ref|NP_821361.1| integral membrane protein [Streptomyces avermitilis MA-4680]
gi|29603823|dbj|BAC67896.1| putative integral membrane protein [Streptomyces avermitilis
MA-4680]
Length = 294
Score = 55.3 bits (132), Expect = 1e-05, Method: Composition-based stats.
Identities = 46/258 (17%), Positives = 93/258 (36%), Gaps = 16/258 (6%)
Query: 52 REILRKQ-------QITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRA 104
RE+LR Q Q ++ + R+ R + +L + I L
Sbjct: 22 RELLRPQAALGPALQRSAPATLTMPEPELDREEVWGRWLLARLERLPGVRIPTINLALLG 81
Query: 105 AGFRSEYSLNILLVVRLVVPIIFLILGIIW-IFGYDKLLEYPFQLRVGAVILIGYVGFCA 163
G ++ + + + L+ +I I + PF + G +LI + F
Sbjct: 82 QG------RGQFMLRKTTLAALGLLCPVIATIPWIIAGVSLPFYVPAGVGLLIAGLLFIT 135
Query: 164 PSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEML 223
P + + + ++ + A LDL+ + + +AL + A ++G L +
Sbjct: 136 PDLAVRDQAKRAREEFAHALSAYLDLVALKRAADAGPAEALEKAA-EVGLGWPFLFLQGA 194
Query: 224 LTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSER 283
L A + +P A + + + + S G ++ +LR + SE
Sbjct: 195 LRRARMEKIPPY-QALTELAAEYDLPVLDDVADIMRGSATDGAAVYKALRARTAALNSEL 253
Query: 284 LMEAEKKAASLGPKLTVP 301
L + +A + K+T P
Sbjct: 254 LADQAAEANAASEKMTAP 271
>gi|167816006|ref|ZP_02447686.1| type II secretion system protein [Burkholderia pseudomallei 91]
Length = 206
Score = 54.9 bits (131), Expect = 1e-05, Method: Composition-based stats.
Identities = 28/138 (20%), Positives = 45/138 (32%), Gaps = 3/138 (2%)
Query: 163 APSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEM 222
W+ + +QKR+ I R P LD ++ V G S+ A + + PL +
Sbjct: 16 LAVFWLVSRMQKRRLRIVRQLPSFLDGIVRLVTLGNSVPAAFQ---ATLQTTEAPLRGCL 72
Query: 223 LLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSE 282
L A + ++ L S +YG L + R
Sbjct: 73 DHVSRMLRSGVEIDRAMVSIAALYRIKEFELVGSVLRLSVKYGGRADVMLDRMAVFMRDL 132
Query: 283 RLMEAEKKAASLGPKLTV 300
E E A S +L+
Sbjct: 133 EQAERELVAMSAETRLSA 150
>gi|269129021|ref|YP_003302391.1| type II secretion system protein [Thermomonospora curvata DSM
43183]
gi|268313979|gb|ACZ00354.1| type II secretion system protein [Thermomonospora curvata DSM
43183]
Length = 208
Score = 54.9 bits (131), Expect = 1e-05, Method: Composition-based stats.
Identities = 34/148 (22%), Positives = 67/148 (45%), Gaps = 6/148 (4%)
Query: 179 IKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVA 238
+ P A+ LL C+ G+S D+A+ V + +GG PL E+ A + + A
Sbjct: 63 MVADLPIAIGLLAACLRGGLSWDEAVEAVCDAVGG---PLGAELRAVAARVRLGADPAAA 119
Query: 239 FENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKL 298
+ + + + ++ G ++ +L L ++ R+ A +A ++G +
Sbjct: 120 WLALAQE---PELAPLARTVARAVDSGAALAPALTRLAADRRAAARAAAAARARAVGVRA 176
Query: 299 TVPMIIFFLPVLILVIIGPAILSIIDTM 326
P+ + FLP IL+ + PA+ I T+
Sbjct: 177 VAPLGLCFLPAFILLGVAPAVAGIAQTL 204
>gi|154151944|ref|YP_001405562.1| type II secretion system protein [Candidatus Methanoregula boonei
6A8]
gi|154000496|gb|ABS56919.1| type II secretion system protein [Methanoregula boonei 6A8]
Length = 450
Score = 54.9 bits (131), Expect = 1e-05, Method: Composition-based stats.
Identities = 26/187 (13%), Positives = 66/187 (35%), Gaps = 11/187 (5%)
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
G + ++I + + + + +++ + L
Sbjct: 88 ATGAAATSSNPAAPTMGLDEVMVFALIIAILPYSI-DITLQKRSTRKKEELYTE---FLF 143
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
L + G+ +A++ +A+ L+ + + ++F + + + +
Sbjct: 144 KLSELMRGGLDPVKAVKELAK---TDLGVLTPHIRIASTSMTFGKSFEESMKAMAQSLHS 200
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP 308
D +R T ++Q+ G S+ D + + RS +E EK+ MI +F
Sbjct: 201 DLIRRYTMLVVQASYSGGSVADLILKASEDMRSIISIEREKEGNLHQ----YVMIFYFAQ 256
Query: 309 VLILVII 315
+I+ I+
Sbjct: 257 AIIIFIV 263
>gi|217423568|ref|ZP_03455069.1| type II secretion system protein [Burkholderia pseudomallei 576]
gi|217393426|gb|EEC33447.1| type II secretion system protein [Burkholderia pseudomallei 576]
Length = 237
Score = 54.9 bits (131), Expect = 2e-05, Method: Composition-based stats.
Identities = 28/138 (20%), Positives = 45/138 (32%), Gaps = 3/138 (2%)
Query: 163 APSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEM 222
W+ + +QKR+ I R P LD ++ V G S+ A + + PL +
Sbjct: 47 LAVFWLVSRMQKRRLRIVRQLPSFLDGIVRLVTLGNSVPAAFQ---ATLQTTEAPLRGCL 103
Query: 223 LLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSE 282
L A + ++ L S +YG L + R
Sbjct: 104 DHVSRMLRSGVEIDRAMVSIAALYRIKEFELVGSVLRLSVKYGGRADVMLDRMAVFMRDL 163
Query: 283 RLMEAEKKAASLGPKLTV 300
E E A S +L+
Sbjct: 164 EQAERELVAMSAETRLSA 181
>gi|119719714|ref|YP_920209.1| type II secretion system protein [Thermofilum pendens Hrk 5]
gi|119524834|gb|ABL78206.1| type II secretion system protein [Thermofilum pendens Hrk 5]
Length = 295
Score = 54.9 bits (131), Expect = 2e-05, Method: Composition-based stats.
Identities = 41/210 (19%), Positives = 82/210 (39%), Gaps = 18/210 (8%)
Query: 120 RLVVPIIFLILGIIWIFGYDKLLE--------------YPFQLRVGAVILIGYVGFCAPS 165
RL++ + +LG + +F L LRV ++ V F P
Sbjct: 11 RLMLLAVGAMLGAVPLFLVASLFRGELLSSIQNAGGVYLVTSLRVNVLVTFSLVLFTLPY 70
Query: 166 VWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLT 225
++ L + S++ P+ L V SG+++ +AL VAE +GG+ + +
Sbjct: 71 AFVDYLNRSFTRSVESVLPELFKGLAEAVRSGLTLPEALSSVAETLGGEVGKM---LRQV 127
Query: 226 IAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLM 285
+ Q A ++R ++ + L+ + G + D+L + R
Sbjct: 128 VLLTEMGVTFQEAIARAFSRYRLPSLDRLGSILLTAYESGGKVIDALETSAQIFGAIRSY 187
Query: 286 EAEKKAASLGPKLTVPMIIFFLPVLILVII 315
E E++A ++ P + L V++ + I
Sbjct: 188 E-EERATTINPHVLTIYAATILYVILSLTI 216
>gi|258510602|ref|YP_003184036.1| hypothetical protein Aaci_0599 [Alicyclobacillus acidocaldarius
subsp. acidocaldarius DSM 446]
gi|257477328|gb|ACV57647.1| hypothetical protein Aaci_0599 [Alicyclobacillus acidocaldarius
subsp. acidocaldarius DSM 446]
Length = 268
Score = 54.9 bits (131), Expect = 2e-05, Method: Composition-based stats.
Identities = 32/169 (18%), Positives = 62/169 (36%), Gaps = 7/169 (4%)
Query: 147 QLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRR 206
L +G + G + ++ ++ + ++ L+ E GI+ + L
Sbjct: 87 SLTLGILAGWGMAAYMV--MYPWQKRKRFEDDLRFGLRRVKMLMASLYERGITPEDMLPL 144
Query: 207 VAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRY-G 265
+ I L + + + A T + +R IQ+ RY G
Sbjct: 145 L---ISATDGALRQLLERAYQRMQTTDTLADALTWMAQETGLAEMRQLASVWIQAGRYEG 201
Query: 266 TSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFF-LPVLILV 313
TS+ L+ + + R++ L EK+A + +I F LP + LV
Sbjct: 202 TSLETQLKQMAVDERAQFLFNLEKRAERKRMSVLFEVIAFIALPSIFLV 250
>gi|167039382|ref|YP_001662367.1| hypothetical protein Teth514_0724 [Thermoanaerobacter sp. X514]
gi|300914023|ref|ZP_07131340.1| Type II secretion system F domain protein [Thermoanaerobacter sp.
X561]
gi|307725292|ref|YP_003905043.1| type II secretion system F domain-containing protein
[Thermoanaerobacter sp. X513]
gi|166853622|gb|ABY92031.1| hypothetical protein Teth514_0724 [Thermoanaerobacter sp. X514]
gi|300890708|gb|EFK85853.1| Type II secretion system F domain protein [Thermoanaerobacter sp.
X561]
gi|307582353|gb|ADN55752.1| Type II secretion system F domain protein [Thermoanaerobacter sp.
X513]
Length = 249
Score = 54.9 bits (131), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/201 (15%), Positives = 76/201 (37%), Gaps = 10/201 (4%)
Query: 125 IIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSI-KRAW 183
LILG + + + + +V+ + F W + R+S +
Sbjct: 49 FGVLILGGLIVLSVVGTVNGANVFALLSVVTGSIIMFY--QYWKKPIDSYRESFYKEEEL 106
Query: 184 PDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFY 243
P A+++ + +E G++ + + + G L E L + + A
Sbjct: 107 PAAIEIFINGLEVGMNKENIISYIVRTREGVVRDLLHE---AQVRLDTGSSLKDALTYAA 163
Query: 244 NRTQMDCVRNATQALIQSDRYGT--SIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVP 301
+++ D + + + + + I ++L L+ E R + + A+ L L P
Sbjct: 164 SKSLNDHFKRFVKIIT--GEFASEQDIKENLEELLDEVREINYNKKTESASVLDNSLFFP 221
Query: 302 MIIFFLPVLILVIIGPAILSI 322
+ + + ++++ P +LS+
Sbjct: 222 IFLGYFIPILIIFALPFVLSL 242
>gi|167894488|ref|ZP_02481890.1| type II secretion system protein [Burkholderia pseudomallei 7894]
Length = 215
Score = 54.9 bits (131), Expect = 2e-05, Method: Composition-based stats.
Identities = 28/138 (20%), Positives = 45/138 (32%), Gaps = 3/138 (2%)
Query: 163 APSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEM 222
W+ + +QKR+ I R P LD ++ V G S+ A + + PL +
Sbjct: 25 LAVFWLVSRMQKRRLRIVRQLPSFLDGIVRLVTLGNSVPAAFQ---ATLQTTEAPLRGCL 81
Query: 223 LLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSE 282
L A + ++ L S +YG L + R
Sbjct: 82 DHVSRMLRSGVEIDRAMVSIAALYRIKEFELVGSVLRLSVKYGGRADVMLDRMAVFMRDL 141
Query: 283 RLMEAEKKAASLGPKLTV 300
E E A S +L+
Sbjct: 142 EQAERELVAMSAETRLSA 159
>gi|160878194|ref|YP_001557162.1| Flp pilus assembly protein TadB-like protein [Clostridium
phytofermentans ISDg]
gi|160426860|gb|ABX40423.1| Flp pilus assembly protein TadB-like protein [Clostridium
phytofermentans ISDg]
Length = 247
Score = 54.9 bits (131), Expect = 2e-05, Method: Composition-based stats.
Identities = 24/199 (12%), Positives = 78/199 (39%), Gaps = 5/199 (2%)
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
++ + F ++ + F + +L+ + + + R+ + + D +
Sbjct: 15 FLVCLFKGFLLCLIVSFLFYQNIFLCLLLSPYLYFFYKKEQRKMAEDRKKKLNTEFLDGI 74
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVP---LSEEMLLTIAELSFLPNRQVAFENFYN 244
L + +E+G S++ A + +D+G + +E +++++ + A F N
Sbjct: 75 HSLSVALEAGYSVENAFKAAIKDLGLMYSKEALIMKEFQCIVSQINHNIPIENAIGEFAN 134
Query: 245 RTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMII 304
R++++ V ++ + R G + +++ + + E + K+ ++
Sbjct: 135 RSKLEDVECFSEVFKTAKRTGGDLVAIIKMTGKTIGEKVEVMREIETLITAKKMEANIMK 194
Query: 305 FFLPVLI--LVIIGPAILS 321
++ +++ P L
Sbjct: 195 LVPFGILGYMLLGSPQFLK 213
>gi|17549305|ref|NP_522645.1| pilus assembly transmembrane protein [Ralstonia solanacearum
GMI1000]
gi|17431557|emb|CAD18235.1| probable pilus assembly tadb transmembrane protein [Ralstonia
solanacearum GMI1000]
Length = 308
Score = 54.9 bits (131), Expect = 2e-05, Method: Composition-based stats.
Identities = 28/196 (14%), Positives = 67/196 (34%), Gaps = 12/196 (6%)
Query: 120 RLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSI 179
RL + + ++ I + L V++ ++ + N ++ +
Sbjct: 83 RLYILLFGPLVAIALLAWVVSSLLSAAMAVALYVLVAAFLFW--------NRTRRMNERL 134
Query: 180 KRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAF 239
+ P LD ++ + G ++ A + + PL + + A
Sbjct: 135 MQQLPGFLDGVVRLMSIGSAVPAAFQAAS---ANTEPPLRTCLTSITQLQRAGKDLDAAV 191
Query: 240 ENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLT 299
+++ + + L + RYG + + R + + E A S +++
Sbjct: 192 LAVGQLYRVNELILLSSVLRLALRYGGRADIVMERTAAFMRDRQQAQKELLALSAETRMS 251
Query: 300 VPMIIFFLPVLILVII 315
I+ LPV++ II
Sbjct: 252 A-WILGLLPVVVGGII 266
>gi|167036498|ref|YP_001664076.1| hypothetical protein Teth39_0067 [Thermoanaerobacter
pseudethanolicus ATCC 33223]
gi|320116990|ref|YP_004187149.1| type II secretion system F domain-containing protein
[Thermoanaerobacter brockii subsp. finnii Ako-1]
gi|166855332|gb|ABY93740.1| hypothetical protein Teth39_0067 [Thermoanaerobacter
pseudethanolicus ATCC 33223]
gi|319930081|gb|ADV80766.1| Type II secretion system F domain protein [Thermoanaerobacter
brockii subsp. finnii Ako-1]
Length = 249
Score = 54.9 bits (131), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/201 (15%), Positives = 76/201 (37%), Gaps = 10/201 (4%)
Query: 125 IIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSI-KRAW 183
LILG + + + + +V+ + F W + R+S +
Sbjct: 49 FGVLILGGLIVLSVVGTVNGANIFALLSVVTGSIIMFY--QYWKKPIDSYRESFYKEEEL 106
Query: 184 PDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFY 243
P A+++ + +E G++ + + + G L E L + + A
Sbjct: 107 PAAIEIFINGLEVGMNKENIISYIVRTREGVVRDLLHE---AQVRLDTGSSLKDALTYAA 163
Query: 244 NRTQMDCVRNATQALIQSDRYGT--SIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVP 301
+++ D + + + + + I ++L L+ E R + + A+ L L P
Sbjct: 164 SKSLNDHFKRFVKIIT--GEFASEQDIKENLEELLDEVREINYNKKTESASVLDNSLFFP 221
Query: 302 MIIFFLPVLILVIIGPAILSI 322
+ + + ++++ P +LS+
Sbjct: 222 IFLGYFIPILIIFALPFVLSL 242
>gi|313817686|gb|EFS55400.1| type II secretion system F domain protein [Propionibacterium acnes
HL046PA2]
gi|314961706|gb|EFT05807.1| type II secretion system F domain protein [Propionibacterium acnes
HL002PA2]
gi|315086656|gb|EFT58632.1| type II secretion system F domain protein [Propionibacterium acnes
HL002PA3]
Length = 300
Score = 54.9 bits (131), Expect = 2e-05, Method: Composition-based stats.
Identities = 37/212 (17%), Positives = 84/212 (39%), Gaps = 7/212 (3%)
Query: 111 YSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISN 170
+ L++ + V+ + +++ + + VG +++ VG+ P I +
Sbjct: 88 RTPGDLVIEKAVMAMGGMLVPALTRAVAAACGDTLPVTPVGLAVVLAVVGWFIPDTRIRS 147
Query: 171 LVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELS 230
+ + A +DL+ + + S +AL A+ L+ + E S
Sbjct: 148 RSKAVRQDAAEAVLVYVDLVTLARLANQSAPRALVEAAQ--MSDHPVLAR--IRMTLERS 203
Query: 231 FLPNRQ--VAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAE 288
L + + + + + + L D+ G S+ +LR V E R L + +
Sbjct: 204 RLEQQSPWAGLDELSDELDLPELAELVEVLRLDDQ-GASLAGALRARVHEMRDAHLNQEK 262
Query: 289 KKAASLGPKLTVPMIIFFLPVLILVIIGPAIL 320
+A + LT+ M+I L + +++I P ++
Sbjct: 263 VEAQTASESLTIWMVIPVLVLGLVLITPPLLI 294
>gi|167845913|ref|ZP_02471421.1| type II secretion system protein [Burkholderia pseudomallei B7210]
Length = 216
Score = 54.9 bits (131), Expect = 2e-05, Method: Composition-based stats.
Identities = 28/138 (20%), Positives = 45/138 (32%), Gaps = 3/138 (2%)
Query: 163 APSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEM 222
W+ + +QKR+ I R P LD ++ V G S+ A + + PL +
Sbjct: 26 LAVFWLVSRMQKRRLRIVRQLPSFLDGIVRLVTLGNSVPAAFQ---ATLQTTEAPLRGCL 82
Query: 223 LLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSE 282
L A + ++ L S +YG L + R
Sbjct: 83 DHVSRMLRSGVEIDRAMVSIAALYRIKEFELVGSVLRLSVKYGGRADVMLDRMAVFMRDL 142
Query: 283 RLMEAEKKAASLGPKLTV 300
E E A S +L+
Sbjct: 143 EQAERELVAMSAETRLSA 160
>gi|167719784|ref|ZP_02403020.1| type II secretion system protein [Burkholderia pseudomallei DM98]
Length = 220
Score = 54.9 bits (131), Expect = 2e-05, Method: Composition-based stats.
Identities = 28/138 (20%), Positives = 45/138 (32%), Gaps = 3/138 (2%)
Query: 163 APSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEM 222
W+ + +QKR+ I R P LD ++ V G S+ A + + PL +
Sbjct: 30 LAVFWLVSRMQKRRLRIVRQLPSFLDGIVRLVTLGNSVPAAFQ---ATLQTTEAPLRGCL 86
Query: 223 LLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSE 282
L A + ++ L S +YG L + R
Sbjct: 87 DHVSRMLRSGVEIDRAMVSIAALYRIKEFELVGSVLRLSVKYGGRADVMLDRMAVFMRDL 146
Query: 283 RLMEAEKKAASLGPKLTV 300
E E A S +L+
Sbjct: 147 EQAERELVAMSAETRLSA 164
>gi|326771893|ref|ZP_08231178.1| bacterial type II secretion system protein F domain-containing
protein [Actinomyces viscosus C505]
gi|326638026|gb|EGE38927.1| bacterial type II secretion system protein F domain-containing
protein [Actinomyces viscosus C505]
Length = 284
Score = 54.9 bits (131), Expect = 2e-05, Method: Composition-based stats.
Identities = 32/167 (19%), Positives = 62/167 (37%), Gaps = 4/167 (2%)
Query: 126 IFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPD 185
+LG I + L+ + + P + IS+ + R++ ++ WP+
Sbjct: 51 AMFVLGSIGLGLLIGLVFLGMSRAWPVAVAFTAIFTAIPFLVISSRARNRRTRLREVWPE 110
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
A+D L+ V +G+S+ +AL + E P + + + + + R
Sbjct: 111 AVDTLVSGVRAGMSLPEALTNLGERGPEAVRP---QFRAFATDYAASARFDSSLDRLKAR 167
Query: 246 TQMDCVRNATQALIQSDRY-GTSIGDSLRVLVSETRSERLMEAEKKA 291
+AL + GT +G LR L R + E +A
Sbjct: 168 FADPVADRIVEALRLAHEVGGTDLGTLLRSLSQMLREDMRTRGELEA 214
>gi|291460200|ref|ZP_06599590.1| putative bacterial type II secretion system protein F domain
protein [Oribacterium sp. oral taxon 078 str. F0262]
gi|291417147|gb|EFE90866.1| putative bacterial type II secretion system protein F domain
protein [Oribacterium sp. oral taxon 078 str. F0262]
Length = 256
Score = 54.9 bits (131), Expect = 2e-05, Method: Composition-based stats.
Identities = 27/154 (17%), Positives = 59/154 (38%), Gaps = 3/154 (1%)
Query: 132 IIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLL 191
+ + LL Y F + L P ++L ++RQ + + +AL +L
Sbjct: 28 LFRALLFSGLLAYCFYQSLLFFFLSIPPALLYPFYLRASLRKQRQRKLLLEFREALSVLS 87
Query: 192 ICVESGISIDQALRRVAEDIG---GQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
+ +G S++ A R ++ G++ +S E L + +F R+ +
Sbjct: 88 SFLGAGYSLENAFRLSGRELSSLLGENAMISREFQKISEGLEQKLPIEDLLFDFSTRSGL 147
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSE 282
D +RN ++ + + G + +R +
Sbjct: 148 DEIRNFSELFSVARKSGGELETIIRRSSELIHDK 181
>gi|221195456|ref|ZP_03568511.1| bacterial type II secretion system protein F domain protein
[Atopobium rimae ATCC 49626]
gi|221184643|gb|EEE17035.1| bacterial type II secretion system protein F domain protein
[Atopobium rimae ATCC 49626]
Length = 311
Score = 54.9 bits (131), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/179 (17%), Positives = 62/179 (34%), Gaps = 14/179 (7%)
Query: 125 IIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWP 184
I+ I+G+ ++ G A+I P + N +K + + + P
Sbjct: 90 ILLSIVGVAFLIGLLFRSVAGVFFTAIALIA------YIPMKY-ENDCRKLKLEVSHSMP 142
Query: 185 DALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYN 244
L + + SG ++ QA+ V G +++ + +L + E
Sbjct: 143 GIYRTLSVALGSGQTLSQAIEYVGNHSHG---AVAQYFIRASLKLRCGMPVESVVEELAC 199
Query: 245 RTQMDCVRNATQALIQSDRYGTSIGDS-LRVLVSETRS---ERLMEAEKKAASLGPKLT 299
+ AL+ S R G+ + + LR R ERL+ + L ++
Sbjct: 200 DLSVPGSSLLATALVISHRTGSPLRNLFLRTATLVERQSEFERLLSVKTAQVRLSARIV 258
>gi|289706182|ref|ZP_06502546.1| type II secretion system F domain protein [Micrococcus luteus SK58]
gi|289557094|gb|EFD50421.1| type II secretion system F domain protein [Micrococcus luteus SK58]
Length = 375
Score = 54.9 bits (131), Expect = 2e-05, Method: Composition-based stats.
Identities = 36/187 (19%), Positives = 74/187 (39%), Gaps = 12/187 (6%)
Query: 140 KLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGIS 199
L+ PF V AV L+ ++ + + + + +++ A LD+L + +G +
Sbjct: 197 DLVRSPFGAVVAAVGLLFWLAGRSWTRVLLRAAAREPAAVGAAV--VLDVLAALLSAGRA 254
Query: 200 IDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQA-L 258
+ AL + + G + T A L + + A+ D V T A L
Sbjct: 255 LPAALDDLGRTLPGAPG-----LRATAALLLWGRDWDEAWAGL----DTDPVWIETAARL 305
Query: 259 IQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPA 318
R G + +L + R + E+ A L +L +P+ + LP + + P
Sbjct: 306 RPLHRSGMAGARTLAETAAAVRQQTRRADERAAEELAVRLVMPLGLCLLPAFVCWGVVPV 365
Query: 319 ILSIIDT 325
+++++
Sbjct: 366 VMALLGA 372
>gi|239629081|ref|ZP_04672112.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
gi|239519227|gb|EEQ59093.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
Length = 227
Score = 54.9 bits (131), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/159 (15%), Positives = 59/159 (37%), Gaps = 3/159 (1%)
Query: 140 KLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGIS 199
++ Y F + A +L+ VG P +L Q+R + + + + +L + +G S
Sbjct: 7 AVVAYTFYRSLIAFLLMMPVGMLYPLYKKRDLRQERIRQLGLQFKEGILVLASYLGAGYS 66
Query: 200 IDQALRRVAEDIGGQSVP---LSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQ 256
++ L ++ G ++EE + ++ F R+ ++ V + Q
Sbjct: 67 LENGLAMCTGELEGIYGKQGMITEEFSTLTNGVRMNRPVELLLMEFGARSGLEDVDHFAQ 126
Query: 257 ALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLG 295
+ R G + + R + ++ E +
Sbjct: 127 VFAAARRSGGELVGIINYTAGIIRDKVQVQEEIHTMTAA 165
>gi|88604392|ref|YP_504570.1| type II secretion system protein [Methanospirillum hungatei JF-1]
gi|88189854|gb|ABD42851.1| type II secretion system protein [Methanospirillum hungatei JF-1]
Length = 296
Score = 54.9 bits (131), Expect = 2e-05, Method: Composition-based stats.
Identities = 37/189 (19%), Positives = 70/189 (37%), Gaps = 8/189 (4%)
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
I I F LL + + +++ + F V+ S + R+ I+ P A++
Sbjct: 69 IAATINEFQGHYLLLGTIIAGIVSFVVLYGITFLIYLVYPSIVAGGRRRDIETTLPYAIN 128
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELS-FLPNRQVAFENFYNRTQ 247
L +GI+ + R++ S E I E+ F + A +N T
Sbjct: 129 YLAAMSTAGITPAEVFRQLGN--STIYGESSVEARYIILEVDVFGRDLIEALKNVSMSTP 186
Query: 248 MDCVRNATQALIQSDRYGTSIGDSLRVLVS----ETRSERLMEAEKKAASLGPKLTVPMI 303
+R+ Q I S G++I D R E R + + A +T ++
Sbjct: 187 SPRMRDFLQGCIGSVAAGSNISDYFRTKAEQYTGENRQTQKQFLDTLALIAESYVTA-LV 245
Query: 304 IFFLPVLIL 312
L ++++
Sbjct: 246 AGTLFMILI 254
>gi|320095975|ref|ZP_08027590.1| type II secretion system protein [Actinomyces sp. oral taxon 178
str. F0338]
gi|319977093|gb|EFW08821.1| type II secretion system protein [Actinomyces sp. oral taxon 178
str. F0338]
Length = 286
Score = 54.9 bits (131), Expect = 2e-05, Method: Composition-based stats.
Identities = 30/145 (20%), Positives = 53/145 (36%), Gaps = 6/145 (4%)
Query: 149 RVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVA 208
+ +G V P+ W+S+ +R + AWP+ +D L+ V +G AL +
Sbjct: 76 TWAVGLAMGVVAAPLPAAWVSSRSHRRAREAREAWPEVVDSLVSGVRAG----AALPTLL 131
Query: 209 EDIGGQSVP-LSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTS 267
D+G P L + VA + +R +AL + G +
Sbjct: 132 ADLGSGGPPALRGAFEAFGQDYRAHGRFDVALDRLKDRLADPVADRIVEALRLARSVGGA 191
Query: 268 -IGDSLRVLVSETRSERLMEAEKKA 291
+ L L R + + E +A
Sbjct: 192 DLARLLTDLAVLLREDARVRGELEA 216
>gi|307265041|ref|ZP_07546602.1| Type II secretion system F domain protein [Thermoanaerobacter
wiegelii Rt8.B1]
gi|306920026|gb|EFN50239.1| Type II secretion system F domain protein [Thermoanaerobacter
wiegelii Rt8.B1]
Length = 301
Score = 54.5 bits (130), Expect = 2e-05, Method: Composition-based stats.
Identities = 40/297 (13%), Positives = 98/297 (32%), Gaps = 39/297 (13%)
Query: 19 TTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSK 78
T +F + + L S EKR+K K+++ + D
Sbjct: 1 MTVSFLFGAAVFMAVVLLYSIREEKRLKL---------KRRLERHLVSPQKNEFSITDLF 51
Query: 79 SLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGY 138
LR F++KL+ KL+ +G +++ + + L +
Sbjct: 52 GLRKFIEKLD-----------RKLKKSGIKAD-AEEVFLWF--------------LLLSV 85
Query: 139 DKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGI 198
+ + + ++ + + L ++R I+ + D + +L ++
Sbjct: 86 LSSISLSLKGFTALGAALPFMLYYLIDYILDYLGRRRVRKIEEQFKDFVKMLGAYLKMVP 145
Query: 199 SIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQAL 258
S A + AE+ PL E + + + + A + + ++ ++
Sbjct: 146 SFAGAFIKAAEEAES---PLKEHTDRVVRKFELGEDIETALQEL-KNVESTYIKAWADSI 201
Query: 259 IQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVII 315
I + R + + + M + A ++ K + + + V+I V +
Sbjct: 202 IFAVRMKSDLSRVCERTAKKLYERIKMSNKIAAMTVQAKSLMVSLAGVMAVMIAVTM 258
>gi|50841534|ref|YP_054761.1| membrane associated protein [Propionibacterium acnes KPA171202]
gi|295129572|ref|YP_003580235.1| type II secretion system F domain protein [Propionibacterium acnes
SK137]
gi|50839136|gb|AAT81803.1| membrane associated protein [Propionibacterium acnes KPA171202]
gi|291376741|gb|ADE00596.1| type II secretion system F domain protein [Propionibacterium acnes
SK137]
gi|313771159|gb|EFS37125.1| type II secretion system F domain protein [Propionibacterium acnes
HL074PA1]
gi|313811815|gb|EFS49529.1| type II secretion system F domain protein [Propionibacterium acnes
HL083PA1]
gi|313832351|gb|EFS70065.1| type II secretion system F domain protein [Propionibacterium acnes
HL007PA1]
gi|313832810|gb|EFS70524.1| type II secretion system F domain protein [Propionibacterium acnes
HL056PA1]
gi|314975243|gb|EFT19338.1| type II secretion system F domain protein [Propionibacterium acnes
HL053PA1]
gi|314977658|gb|EFT21753.1| type II secretion system F domain protein [Propionibacterium acnes
HL045PA1]
gi|314985157|gb|EFT29249.1| type II secretion system F domain protein [Propionibacterium acnes
HL005PA1]
gi|315081600|gb|EFT53576.1| type II secretion system F domain protein [Propionibacterium acnes
HL078PA1]
gi|315097117|gb|EFT69093.1| type II secretion system F domain protein [Propionibacterium acnes
HL038PA1]
gi|327332546|gb|EGE74281.1| membrane associated protein [Propionibacterium acnes HL096PA2]
gi|327446675|gb|EGE93329.1| type II secretion system F domain protein [Propionibacterium acnes
HL043PA2]
gi|327448882|gb|EGE95536.1| type II secretion system F domain protein [Propionibacterium acnes
HL043PA1]
gi|328759745|gb|EGF73341.1| membrane associated protein [Propionibacterium acnes HL099PA1]
Length = 300
Score = 54.5 bits (130), Expect = 2e-05, Method: Composition-based stats.
Identities = 37/212 (17%), Positives = 84/212 (39%), Gaps = 7/212 (3%)
Query: 111 YSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISN 170
+ L++ + V+ + +++ + + VG +++ VG+ P I +
Sbjct: 88 RTPGDLVIEKAVMAMGGMLVPALARAVAAACGDTLPVTPVGLAVVLAVVGWFIPDTRIRS 147
Query: 171 LVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELS 230
+ + A +DL+ + + S +AL A+ L+ + E S
Sbjct: 148 RSKAVRQDAAEAVLVYVDLVTLARLANQSAPRALVEAAQ--MSDHPVLAR--IRMTLERS 203
Query: 231 FLPNRQ--VAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAE 288
L + + + + + + L D+ G S+ +LR V E R L + +
Sbjct: 204 RLEQQSPWAGLDELSDELDLPELAELVEVLRLDDQ-GASLAGALRARVHEMRDAHLNQEK 262
Query: 289 KKAASLGPKLTVPMIIFFLPVLILVIIGPAIL 320
+A + LT+ M+I L + +++I P ++
Sbjct: 263 VEAQTASESLTIWMVIPVLVLGLVLITPPLLI 294
>gi|284162413|ref|YP_003401036.1| type II secretion system protein [Archaeoglobus profundus DSM 5631]
gi|284012410|gb|ADB58363.1| type II secretion system protein [Archaeoglobus profundus DSM 5631]
Length = 628
Score = 54.5 bits (130), Expect = 2e-05, Method: Composition-based stats.
Identities = 33/185 (17%), Positives = 73/185 (39%), Gaps = 7/185 (3%)
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
++L + + L LR+ +L+ F P + + + ++ + PD
Sbjct: 369 VVLFHVTLASIVVFLISLRYLRLEHTLLLAISAFVIPLIILVEIKERVMRKTEERIPDVF 428
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQ 247
L + E+G+++ + LR +++ + L+ E+ + E+ + AF R +
Sbjct: 429 SELAMLNEAGLTVLEGLRVLSQ---TEMGLLTREIAVMRREIEWGVLIPRAFIRLGIRVK 485
Query: 248 MDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFL 307
D + ++++ +I D+ V+ R A KK L +II+
Sbjct: 486 SDILSKIVPVVVKALETAPTIKDAFNVVA---RYADTEVAFKKRMRSST-LLYVIIIYMC 541
Query: 308 PVLIL 312
V+ L
Sbjct: 542 IVVFL 546
Score = 41.4 bits (96), Expect = 0.18, Method: Composition-based stats.
Identities = 42/221 (19%), Positives = 82/221 (37%), Gaps = 25/221 (11%)
Query: 73 RTRDSKSLRNFVKKLNLKAILVDE----NIVNKLRAAGFRSEYSLNILLVVRLVVPIIFL 128
R + L+N K +L+ LV N+ L A F S I + L++ +I +
Sbjct: 15 RRCTRRVLKNREKYRDLEKALVSARLPLNVQELLAIASFYS----IISFFIGLMLGMIIV 70
Query: 129 ILG----IIWIFGYDKLLEYPFQ-------LRVGAVILIGYVGFCAPSV----WISNLVQ 173
+ +++I Y Y + + I+ G + + S + L +
Sbjct: 71 LTTSPTLLLYIASYTPFYNYVSENYYLIRKVYPAIAIIFGLIAYKLTSYSILSYPFFLAK 130
Query: 174 KRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELS-FL 232
+R++ I+ P A+ ++ GI I +R VA + LS E ++ + + F
Sbjct: 131 RRRNEIELYLPHAISMMYSMATGGIPIHNMIRTVA-ESKHIFGELSREFMIIVEMVDVFK 189
Query: 233 PNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLR 273
N + T + + +I G + + LR
Sbjct: 190 RNIYDGMRFVRDTTPSPQLSSFLDNMIFILEGGGRLSEFLR 230
>gi|11498266|ref|NP_069492.1| hypothetical protein AF0658 [Archaeoglobus fulgidus DSM 4304]
gi|2649961|gb|AAB90583.1| conserved hypothetical protein [Archaeoglobus fulgidus DSM 4304]
Length = 614
Score = 54.5 bits (130), Expect = 2e-05, Method: Composition-based stats.
Identities = 35/220 (15%), Positives = 84/220 (38%), Gaps = 16/220 (7%)
Query: 107 FRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSV 166
+ ++ L+ + ++ + ++ + V ++I PS+
Sbjct: 341 LKRPFTEEPYLLTLRALSFYLIVPAVAVFIYLYGKVDLDLLIFVTLSMVI------LPSI 394
Query: 167 WISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTI 226
+ + +++ P+ + L E+G+++ +ALR ++E + L E+
Sbjct: 395 LFIEYKNRLLTKMEKELPEFMKQLASLNEAGLNVVEALRHLSE---SELGVLGREIRKIK 451
Query: 227 AELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLME 286
E+ + A E +R + V A L+++ SI D+L SE +E
Sbjct: 452 REVEWGELITSALEKIESRVRSQIVAKAITLLVKAIESTPSIRDALNTAS--MYSELEVE 509
Query: 287 AEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
+ ++++ II +L V + A + I + +
Sbjct: 510 VRDRI---KAQMSMYTIIIYL--AFAVFLYTAYILIQNML 544
Score = 54.1 bits (129), Expect = 3e-05, Method: Composition-based stats.
Identities = 45/255 (17%), Positives = 101/255 (39%), Gaps = 22/255 (8%)
Query: 79 SLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGY 138
+LR F +K ++ + + + +A R ++ LL + L P++ +I GI+ F
Sbjct: 8 ALRRFYRKRYIRRPGSYSELSSAIESA--RLRMTVPELLSIALFYPLLSVIPGILLGFLV 65
Query: 139 DKLLE--------------YPFQLRVGAVILIGYVGF--CAPSVWISNLVQKRQSSIKRA 182
+++ + F+L + + GF + + R+ I +
Sbjct: 66 SEVINPGGPLIIRNTVIPYWQFELALITGFAVLAFGFTRYLILSYPFYITNVRRGKIDSS 125
Query: 183 WPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEML--LTIAELSFLPNRQVAFE 240
P A++++L + G+ + R VAE+ +S E +T+ E+ F + A +
Sbjct: 126 LPHAVNMMLGMAKGGVPLISIFRFVAEN-REIFGEISREFDKIVTLVEI-FGYDMITAMK 183
Query: 241 NFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV 300
+ T + ++ + I G + + LR + +ER +L +
Sbjct: 184 YVADTTPSEKLKVFLENFINVYEGGGDVVEYLRAKSEQLLTERETYYTLFFETLQVYAEI 243
Query: 301 PMIIFFLPVLILVII 315
+ +F + L +I+
Sbjct: 244 YLALFIVAPLFFLIV 258
>gi|239918297|ref|YP_002957855.1| type II secretion system protein F [Micrococcus luteus NCTC 2665]
gi|239839504|gb|ACS31301.1| type II secretion system protein F [Micrococcus luteus NCTC 2665]
Length = 339
Score = 54.5 bits (130), Expect = 2e-05, Method: Composition-based stats.
Identities = 37/187 (19%), Positives = 74/187 (39%), Gaps = 12/187 (6%)
Query: 140 KLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGIS 199
L+ PF V AV L+ ++ + + + + +++ A LD+L + +G S
Sbjct: 161 DLVRSPFGAVVAAVGLLFWLAGRSWTRLLLRAAAREPAAVGAAV--VLDVLAALLSAGRS 218
Query: 200 IDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQA-L 258
+ AL + + G + + T A L + + A+ D V T A L
Sbjct: 219 LPAALDDLGRTLPG-----ARGLRATAALLLWGRDWDEAWAGL----DTDPVWIETAARL 269
Query: 259 IQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPA 318
R G + +L + R + E+ A L L +P+ + LP + + P
Sbjct: 270 RPLHRSGMAGARTLAETAAAVRQQTRRADERAAEELAVCLVMPLGLCLLPAFVCWGVVPV 329
Query: 319 ILSIIDT 325
+++++
Sbjct: 330 VMALLRA 336
>gi|124027968|ref|YP_001013288.1| hypothetical protein Hbut_1100 [Hyperthermus butylicus DSM 5456]
gi|123978662|gb|ABM80943.1| conserved crenarchaeal protein [Hyperthermus butylicus DSM 5456]
Length = 621
Score = 54.5 bits (130), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/181 (17%), Positives = 64/181 (35%), Gaps = 6/181 (3%)
Query: 115 ILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRV---GAVILIGYVGFCAPSVWISNL 171
L R++ ++ L+ + Y L F ++V A+ + F A ++ ++
Sbjct: 68 TLYAARILFAVVLLLSAAVVATIYLAFLPISFTVKVVISLALFFAPVIVFVAGLMYPASK 127
Query: 172 VQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELS- 230
R + +P + G+ ++ + R+AE L EE + ++
Sbjct: 128 ASSRAERVDMEFPFFAAYMTAMAYGGVPPEKLIERLAE--IRMFRALREEARRILRDVKI 185
Query: 231 FLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKK 290
F N A E+ R+ + R G ++ L V E R+ + +
Sbjct: 186 FGKNILSALEHNALHHPSRLYRDFMLGYLTVIRTGGNVHHYLEVRTQEVIQARMEDLRNR 245
Query: 291 A 291
A
Sbjct: 246 A 246
Score = 42.9 bits (100), Expect = 0.071, Method: Composition-based stats.
Identities = 23/147 (15%), Positives = 53/147 (36%), Gaps = 4/147 (2%)
Query: 121 LVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIK 180
V +I L L ++ + + L + P++ + + +++ I
Sbjct: 335 FVTSLILLQLTGVYRIPTATVDIKAISMASAIFALGLMIASLGPAI-VYMRIARKEKKIN 393
Query: 181 RAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFE 240
R+ P L +G+S ++++ ++E LS + A LS + + AF
Sbjct: 394 RSLPAFFRDLSEVRRTGLSPERSIIVLSER---DYGELSNVIRRIAAALSMGLHVERAFR 450
Query: 241 NFYNRTQMDCVRNATQALIQSDRYGTS 267
+ +R + L+ + G
Sbjct: 451 TAIKGYKSWILRVTMRFLVDAIDVGGG 477
>gi|282853085|ref|ZP_06262422.1| type II secretion system F domain protein [Propionibacterium acnes
J139]
gi|282582538|gb|EFB87918.1| type II secretion system F domain protein [Propionibacterium acnes
J139]
gi|314922728|gb|EFS86559.1| type II secretion system F domain protein [Propionibacterium acnes
HL001PA1]
gi|314965812|gb|EFT09911.1| type II secretion system F domain protein [Propionibacterium acnes
HL082PA2]
gi|314982955|gb|EFT27047.1| type II secretion system F domain protein [Propionibacterium acnes
HL110PA3]
gi|315091259|gb|EFT63235.1| type II secretion system F domain protein [Propionibacterium acnes
HL110PA4]
gi|315094495|gb|EFT66471.1| type II secretion system F domain protein [Propionibacterium acnes
HL060PA1]
gi|315105216|gb|EFT77192.1| type II secretion system F domain protein [Propionibacterium acnes
HL050PA2]
gi|327328989|gb|EGE70749.1| membrane associated protein [Propionibacterium acnes HL103PA1]
Length = 300
Score = 54.5 bits (130), Expect = 2e-05, Method: Composition-based stats.
Identities = 37/212 (17%), Positives = 84/212 (39%), Gaps = 7/212 (3%)
Query: 111 YSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISN 170
+ L++ + V+ + +++ + + VG +++ VG+ P I +
Sbjct: 88 RTPGDLVIEKAVMAMGGMLVPALVRAVAAACGDTLPVTPVGLAVVLAVVGWFIPDTRIRS 147
Query: 171 LVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELS 230
+ + A +DL+ + + S +AL A+ L+ + E S
Sbjct: 148 RSKAVRQDAAEAVLVYVDLVTLARLANQSAPRALVEAAQ--MSDHPVLAR--IRMTLERS 203
Query: 231 FLPNRQ--VAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAE 288
L + + + + + + L D+ G S+ +LR V E R L + +
Sbjct: 204 RLEQQSPWAGLDGLSDELDLPELAELVEVLRLDDQ-GASLAGALRARVHEMRDAHLNQEK 262
Query: 289 KKAASLGPKLTVPMIIFFLPVLILVIIGPAIL 320
+A + LT+ M+I L + +++I P ++
Sbjct: 263 VEAQTASESLTIWMVIPVLVLGLVLITPPLLI 294
>gi|296129085|ref|YP_003636335.1| Type II secretion system F domain protein [Cellulomonas flavigena
DSM 20109]
gi|296020900|gb|ADG74136.1| Type II secretion system F domain protein [Cellulomonas flavigena
DSM 20109]
Length = 286
Score = 54.5 bits (130), Expect = 2e-05, Method: Composition-based stats.
Identities = 30/142 (21%), Positives = 52/142 (36%), Gaps = 4/142 (2%)
Query: 151 GAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAED 210
+ G AP + ++R +S + WPD +D L V +G+S+ +A VA+
Sbjct: 78 AVSLCFGGFAAGAPWALVQGRARRRLASTRELWPDVVDHLASGVRAGLSLPEA---VAQL 134
Query: 211 IGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQS-DRYGTSIG 269
L + + + +R +AL + D GT +G
Sbjct: 135 GDRGPAELRAPFRAFAEDYRATGRFTDSLDALKDRLADPVADRIIEALRLTRDVGGTDLG 194
Query: 270 DSLRVLVSETRSERLMEAEKKA 291
LR L + R + E +A
Sbjct: 195 RLLRTLSTFLRDDLRTRGELEA 216
>gi|291525764|emb|CBK91351.1| hypothetical protein EUR_23630 [Eubacterium rectale DSM 17629]
Length = 290
Score = 54.5 bits (130), Expect = 2e-05, Method: Composition-based stats.
Identities = 36/228 (15%), Positives = 83/228 (36%), Gaps = 19/228 (8%)
Query: 102 LRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGF 161
LRA+G + + LI+ +++F L VIL+G + +
Sbjct: 78 LRASGLGMTPEVYTAYAYLKAGSVFLLIIPALYVF----------PLAALFVILLGIMIY 127
Query: 162 CAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEE 221
++++++ I+ + + ++ + L + +E
Sbjct: 128 YKEIQKADEMLKEKREQIEEELYRFVSTITQELK---NSRDVLSMLEHYKENAGAAFRKE 184
Query: 222 MLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRS 281
+ + A++ + + A F R + + + LI R G ++L + +
Sbjct: 185 LDIVCADMRS-SSYEAALTRFEARLNSPQLSDVVRGLIGVLR-GDDGAVYFQMLTHDFKQ 242
Query: 282 ERLMEAEKKAASLGPKL---TVPMIIFFLPVLILVIIGPAILSIIDTM 326
+ KAA + PK+ + M++ FL +II I+ + T+
Sbjct: 243 TEFQRLKAKAAKIPPKIRVYSFAMLMCFLATYFAIIIY-EIIRSMGTL 289
>gi|218290591|ref|ZP_03494693.1| hypothetical protein AaLAA1DRAFT_2279 [Alicyclobacillus
acidocaldarius LAA1]
gi|218239375|gb|EED06572.1| hypothetical protein AaLAA1DRAFT_2279 [Alicyclobacillus
acidocaldarius LAA1]
Length = 268
Score = 54.5 bits (130), Expect = 2e-05, Method: Composition-based stats.
Identities = 33/187 (17%), Positives = 70/187 (37%), Gaps = 5/187 (2%)
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
+L + + L+ + + +++G+ +V+ ++ + ++
Sbjct: 67 VLFLFFAVVLLPLMIWGGMHSLTLGVIVGWSMAVYMAVYPWQKRKRFEDDLRFGLRRVKM 126
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
L++ E GI+ + L + G L + + A T +
Sbjct: 127 LMVSLYERGIAPEDMLPLLVSATDGALRQL---LERAYQRMQTTDTLADALTWMAQETGL 183
Query: 249 DCVRNATQALIQSDRY-GTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFF- 306
+R IQ+ RY GTS+ L+ + + R++ L EK+A + + I F
Sbjct: 184 AEMRQLASVWIQAGRYEGTSLETQLQQMAVDERAQFLFNLEKRAERKKMSVLIEAIAFIA 243
Query: 307 LPVLILV 313
LP + LV
Sbjct: 244 LPTIFLV 250
>gi|119952476|ref|YP_949890.1| hypothetical protein AAur_pTC10016 [Arthrobacter aurescens TC1]
gi|119951606|gb|ABM10516.1| putative Membrane protein [Arthrobacter aurescens TC1]
Length = 317
Score = 54.5 bits (130), Expect = 2e-05, Method: Composition-based stats.
Identities = 39/221 (17%), Positives = 77/221 (34%), Gaps = 19/221 (8%)
Query: 117 LVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVI--LIGYVGFCAPSVWISNLVQK 174
+ R+V + LG + +L L+ G +I +G + K
Sbjct: 93 WLARVVGLALTFGLGPTVLMLGRRLGGNDVALQWGPIIGLFLGSAAVVLSVRDLRTQAAK 152
Query: 175 RQSSIKRAWPDALDLLLICVESGIS----IDQALRRVAEDIGGQSVPLSEEMLLTIAELS 230
+ LDL+ + +E+G + A + A+ +G LS+ E+
Sbjct: 153 VRGQFVWGLSIYLDLVAMSMEAGKGHAEALPAAAKMGADRVGEGRGLLSD--TRVFGEIR 210
Query: 231 FLPNRQ--------VAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSE 282
R A R + + + ++ ++ G+ + SL RS
Sbjct: 211 SAIQRAPEKAITAWEALGRLGERYGIRELISLRSSIELANDEGSRVKASLIARAETMRSA 270
Query: 283 RLMEAEKKAASLGPKL-TVPMIIFFLPVLILVIIGPAILSI 322
RL A ++A + + + M+ L + + P ILS+
Sbjct: 271 RLAGALERANNATESMRQLTMVAAILAGIYI--AAPYILSL 309
>gi|332982942|ref|YP_004464383.1| Type II secretion system F domain-containing protein [Mahella
australiensis 50-1 BON]
gi|332700620|gb|AEE97561.1| Type II secretion system F domain protein [Mahella australiensis
50-1 BON]
Length = 250
Score = 54.1 bits (129), Expect = 3e-05, Method: Composition-based stats.
Identities = 34/216 (15%), Positives = 84/216 (38%), Gaps = 11/216 (5%)
Query: 107 FRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSV 166
F ++ + + V ++ ++ +IL + G + + G + YVG+ P
Sbjct: 38 FDAKNAAELFSAVLVLSALMSIILVFGLMRGISPTILFIGLAGFGITL---YVGYQKPID 94
Query: 167 WISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTI 226
+ K P ++LL+ + + ++ L+ +A++ G + + I
Sbjct: 95 EFKQRLMK-----DNELPTVVNLLVQGLSVEMPVENILQYIADNKHGAMRDI---IKGAI 146
Query: 227 AELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLME 286
++ + + + ++ + T+ L +S + L+ ++S+ ERL
Sbjct: 147 DNINLGIPLEQSLQEAAEKSMNKYFQRVTRILTKSKESSKGLAAQLQDVLSDMEEERLNT 206
Query: 287 AEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
L L + + + LI++I+ P I S+
Sbjct: 207 KLSHVNMLDNALFFVVFLGYFLPLIVMILMPMITSM 242
>gi|167038601|ref|YP_001666179.1| hypothetical protein Teth39_2222 [Thermoanaerobacter
pseudethanolicus ATCC 33223]
gi|320114926|ref|YP_004185085.1| type II secretion system F domain-containing protein
[Thermoanaerobacter brockii subsp. finnii Ako-1]
gi|166857435|gb|ABY95843.1| hypothetical protein Teth39_2222 [Thermoanaerobacter
pseudethanolicus ATCC 33223]
gi|319928017|gb|ADV78702.1| Type II secretion system F domain protein [Thermoanaerobacter
brockii subsp. finnii Ako-1]
Length = 241
Score = 54.1 bits (129), Expect = 3e-05, Method: Composition-based stats.
Identities = 31/200 (15%), Positives = 75/200 (37%), Gaps = 10/200 (5%)
Query: 125 IIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSI-KRAW 183
LILG + + + + +V+ + F W + R+S +
Sbjct: 49 FGVLILGGLIVLSVVGTVNGANIFALLSVVTGSIIMFY--QYWKKPIDSYRESFYKEEEL 106
Query: 184 PDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFY 243
P A+++ + +E G++ + + + G L E L + + A
Sbjct: 107 PAAIEIFINGLEVGMNKENIISYIVRTREGVVRDLLHE---AQVRLDTGSSLKDALTYAA 163
Query: 244 NRTQMDCVRNATQALIQSDRYGT--SIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVP 301
+++ D + + + + + I ++L L+ E R + + A+ L L P
Sbjct: 164 SKSLNDHFKRFVKIIT--GEFASEQDIKENLEELLDEVREINYNKKTESASVLDNSLFFP 221
Query: 302 MIIFFLPVLILVIIGPAILS 321
+ + + ++++ P +LS
Sbjct: 222 IFLGYFIPILIIFALPFVLS 241
>gi|307354768|ref|YP_003895819.1| type II secretion system F domain-containing protein [Methanoplanus
petrolearius DSM 11571]
gi|307158001|gb|ADN37381.1| Type II secretion system F domain protein [Methanoplanus
petrolearius DSM 11571]
Length = 324
Score = 54.1 bits (129), Expect = 3e-05, Method: Composition-based stats.
Identities = 39/216 (18%), Positives = 73/216 (33%), Gaps = 8/216 (3%)
Query: 112 SLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNL 171
S+ I + + + + I + G +L G ++ N
Sbjct: 76 SMIIFSAIGAAAIMALVSVFIFALPISPFYSPNSPLYIAGLTLLTGIAAGGGFPFYLQNQ 135
Query: 172 VQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELS- 230
+ ++ I+R P AL + I SG + L+ VA + G +S E + +
Sbjct: 136 ISNKKMDIERNLPYALAFMSILASSGTTPLDILKSVANENYGH---ISREFSKVLFRVEI 192
Query: 231 FLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKK 290
+ A + T D R+ + G + L E + R ++
Sbjct: 193 LGEDAVTAMNALVSNTPSDPFRDICIDISNLIYGGGGLSGYLNAKSKELMNIRRQTDKEF 252
Query: 291 AASLGP----KLTVPMIIFFLPVLILVIIGPAILSI 322
SLG L +++ L +L +VI G + I
Sbjct: 253 VESLGVFGEGYLGGVIMVLTLAILGIVITGALGIQI 288
>gi|229825136|ref|ZP_04451205.1| hypothetical protein GCWU000182_00487 [Abiotrophia defectiva ATCC
49176]
gi|229790508|gb|EEP26622.1| hypothetical protein GCWU000182_00487 [Abiotrophia defectiva ATCC
49176]
Length = 245
Score = 54.1 bits (129), Expect = 3e-05, Method: Composition-based stats.
Identities = 25/149 (16%), Positives = 64/149 (42%), Gaps = 3/149 (2%)
Query: 169 SNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQ---SVPLSEEMLLT 225
L++KR++ + + + L +++ +++G S+++A+ E + + E++
Sbjct: 54 KKLIEKRKNELSAQFIEFLQVIMSSLKAGTSLERAILSARERLYSLYNNDSLIITEIISM 113
Query: 226 IAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLM 285
+ L + +F R+ ++ + + S R G ++ + + + M
Sbjct: 114 ESSLRMNIPVEDILYDFGKRSGIEDINQFAEVCKVSKRAGGNLIKVMDHTIKCIVDKNEM 173
Query: 286 EAEKKAASLGPKLTVPMIIFFLPVLILVI 314
E E +A G KL + LP ++L +
Sbjct: 174 EREIQAFISGKKLESKFMTAILPAILLYM 202
>gi|326205012|ref|ZP_08194862.1| Flp pilus assembly protein TadB-like protein [Clostridium
papyrosolvens DSM 2782]
gi|325984817|gb|EGD45663.1| Flp pilus assembly protein TadB-like protein [Clostridium
papyrosolvens DSM 2782]
Length = 247
Score = 54.1 bits (129), Expect = 3e-05, Method: Composition-based stats.
Identities = 32/197 (16%), Positives = 80/197 (40%), Gaps = 5/197 (2%)
Query: 123 VPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRA 182
+P+ +L + + Y F + ++I G C ++ KR+ +
Sbjct: 9 IPLQLKLLYALSAAAVVFAVSYMFYRSIVISVIISPSGICYLRYKRKQIIYKRKRELNLQ 68
Query: 183 WPDALDLLLICVESGISIDQALRRVAEDIGGQSVP----LSEEMLLTIAELSFLPNRQVA 238
+ D L L + +G ++++ D+ + E + I +LS + + A
Sbjct: 69 FKDLLISLASSLSAGKPLEKSFVGALSDLYVLYPSDDAHIVRETKIIINKLSLNVSIEDA 128
Query: 239 FENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKL 298
F +R+ +D ++N + +I R G ++ ++++ + M+ E + L +
Sbjct: 129 ISEFADRSDIDDIKNFSDVIIICKRTGGNLVEAIKNSSRIISEKIEMKQEIETL-LSSRR 187
Query: 299 TVPMIIFFLPVLILVII 315
I+ +P+ ++ I+
Sbjct: 188 FEQKILNIMPIAMIFIL 204
>gi|72160530|ref|YP_288187.1| integral membrane protein [Thermobifida fusca YX]
gi|71914262|gb|AAZ54164.1| putative integral membrane protein [Thermobifida fusca YX]
Length = 246
Score = 54.1 bits (129), Expect = 3e-05, Method: Composition-based stats.
Identities = 20/120 (16%), Positives = 46/120 (38%), Gaps = 3/120 (2%)
Query: 207 VAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGT 266
VA PL + +L + A+++ + + +AL ++ G
Sbjct: 127 VAAVAQALGGPLGTALDGVARQLRLGADPARAWQSLHA---PAELAAVGRALARASHTGA 183
Query: 267 SIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
+ D + ++ R A + A G + +P+ + FLP +L+ + P ++ +
Sbjct: 184 PLADVVESHAADCRRTARATALELAHRTGVAVVIPLGVCFLPAFVLLGVVPLAAGLVSGL 243
>gi|220927958|ref|YP_002504867.1| hypothetical protein Ccel_0505 [Clostridium cellulolyticum H10]
gi|219998286|gb|ACL74887.1| hypothetical protein Ccel_0505 [Clostridium cellulolyticum H10]
Length = 241
Score = 54.1 bits (129), Expect = 3e-05, Method: Composition-based stats.
Identities = 23/119 (19%), Positives = 55/119 (46%), Gaps = 6/119 (5%)
Query: 108 RSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVW 167
S + + + ++V+ I +I G + + L Y V +L G +
Sbjct: 82 YSAFHIRVFHAKKIVL-IALIIPGELIV---GILSHYQAVFNVYITLLFGIL-IFLDDSR 136
Query: 168 ISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTI 226
+S ++KR I+ ++PD ++ L + + +G+++ +A +++ D Q +E+ T+
Sbjct: 137 LSRKIKKRHLEIQLSFPDFINKLALMLNAGLTMSKAWEKISFDSNKQD-AFYKEVKKTV 194
>gi|313824568|gb|EFS62282.1| type II secretion system F domain protein [Propionibacterium acnes
HL036PA2]
Length = 300
Score = 54.1 bits (129), Expect = 3e-05, Method: Composition-based stats.
Identities = 37/216 (17%), Positives = 82/216 (37%), Gaps = 15/216 (6%)
Query: 111 YSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISN 170
+ L++ + V+ + +++ + + VG +++ VG+ P I +
Sbjct: 88 RTPGDLVIEKAVMAMGGMLVPALTRAVAAACGDTLPVTPVGLAVVLAVVGWFIPDTRIRS 147
Query: 171 LVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELS 230
+ + A +DL+ + + S +AL A+ L+ + E S
Sbjct: 148 RSKAVRQDAAEAVLVYVDLVTLARLANQSAPRALVEAAQ--MSDHPVLAR--IRMTLERS 203
Query: 231 FLPNRQ--VAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLM--- 285
L + + + + + + L D+ G S+ +LR V E R L
Sbjct: 204 RLEQQSPWAGLDGLSDELDLPELAELVEVLRLDDQ-GASLAGALRARVHEMRDAHLNQEK 262
Query: 286 -EAEKKAASLGPKLTVPM----IIFFLPVLILVIIG 316
EA+ + SL + +P+ ++ P L+++ G
Sbjct: 263 VEAQTASESLTIWMVIPVLVLGLVLITPPLLIMAGG 298
>gi|254478343|ref|ZP_05091722.1| Bacterial type II secretion system protein F domain
[Carboxydibrachium pacificum DSM 12653]
gi|214035701|gb|EEB76396.1| Bacterial type II secretion system protein F domain
[Carboxydibrachium pacificum DSM 12653]
Length = 301
Score = 54.1 bits (129), Expect = 3e-05, Method: Composition-based stats.
Identities = 32/272 (11%), Positives = 93/272 (34%), Gaps = 29/272 (10%)
Query: 58 QQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRS--EYSLNI 115
++ L+ R K+ + + K+ + E + KL+ +G +S E +
Sbjct: 22 RENRRLKLKRRLERHLVAPQKNEFSVAQMFGFKSFI--EVLDKKLQRSGIKSDAEEAFLW 79
Query: 116 LLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKR 175
++ +V + + G + + + + + + L ++R
Sbjct: 80 FVLFSIVSALFLSLKGFALL-----------------GLSLPVMLYYLGDYVLEYLGRRR 122
Query: 176 QSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNR 235
+ + D + +L ++ S A + AE+ PL E + + +
Sbjct: 123 IRKTEEQFRDFVKMLGAYLKMVPSFAGAFIKAAEEAEN---PLKEHTDRVVRKFELGEDL 179
Query: 236 QVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLG 295
+ A + + ++ ++I + R + + + M + ++
Sbjct: 180 EEALKEL-KNVESTYIKAWADSIIFAVRMKSDLSRVCERTAKKLYERIKMSNRIASMTVQ 238
Query: 296 PKLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
K + L +++V++ ++S D ++
Sbjct: 239 AKSLMV----SLAGVMIVMMAATVMSSPDFLR 266
>gi|291548759|emb|CBL25021.1| Flp pilus assembly protein TadB [Ruminococcus torques L2-14]
Length = 251
Score = 54.1 bits (129), Expect = 3e-05, Method: Composition-based stats.
Identities = 30/189 (15%), Positives = 67/189 (35%), Gaps = 4/189 (2%)
Query: 130 LGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDL 189
+GII L+ Y F + IL+ + F W+ ++ +R + D++
Sbjct: 21 VGIIKCTVRFLLILYLFYESILPAILLFPLWFLYMKEWMEEKAIGKEQEFRRQFRDSIQT 80
Query: 190 LLICVESGISIDQALRRVAEDIGGQSVP---LSEEMLLTIAELSFLPNRQVAFENFYNRT 246
+ +++G S++ A+R D+ G + +E + L + F
Sbjct: 81 MAGALKAGYSVENAIRETNRDLIGMYDANTRIRKEYGQMVRRLDLNLSVVTVLNEFAAEV 140
Query: 247 QMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFF 306
+ + V N + G +R + E E + KL ++
Sbjct: 141 KQEDVTNFITVYAAAKVSGGDSIAIIRDAARTIGEKIDTEREIQTMLAAKKLEFEIMSVI 200
Query: 307 LPVLILVII 315
P ++++ +
Sbjct: 201 -PFIMILYM 208
>gi|289427557|ref|ZP_06429270.1| type II secretion system F domain protein [Propionibacterium acnes
J165]
gi|289159487|gb|EFD07678.1| type II secretion system F domain protein [Propionibacterium acnes
J165]
gi|313806903|gb|EFS45401.1| type II secretion system F domain protein [Propionibacterium acnes
HL087PA2]
gi|313821487|gb|EFS59201.1| type II secretion system F domain protein [Propionibacterium acnes
HL036PA1]
gi|313826239|gb|EFS63953.1| type II secretion system F domain protein [Propionibacterium acnes
HL063PA1]
gi|314926289|gb|EFS90120.1| type II secretion system F domain protein [Propionibacterium acnes
HL036PA3]
gi|314980210|gb|EFT24304.1| type II secretion system F domain protein [Propionibacterium acnes
HL072PA2]
gi|314987066|gb|EFT31158.1| type II secretion system F domain protein [Propionibacterium acnes
HL005PA2]
gi|314990441|gb|EFT34532.1| type II secretion system F domain protein [Propionibacterium acnes
HL005PA3]
gi|315083128|gb|EFT55104.1| type II secretion system F domain protein [Propionibacterium acnes
HL027PA2]
gi|315088060|gb|EFT60036.1| type II secretion system F domain protein [Propionibacterium acnes
HL072PA1]
gi|327333719|gb|EGE75436.1| membrane associated protein [Propionibacterium acnes HL096PA3]
gi|327444422|gb|EGE91076.1| type II secretion system F domain protein [Propionibacterium acnes
HL013PA2]
gi|328757929|gb|EGF71545.1| type II secretion system F domain protein [Propionibacterium acnes
HL020PA1]
gi|332674442|gb|AEE71258.1| type II secretion system protein [Propionibacterium acnes 266]
Length = 300
Score = 54.1 bits (129), Expect = 3e-05, Method: Composition-based stats.
Identities = 37/212 (17%), Positives = 84/212 (39%), Gaps = 7/212 (3%)
Query: 111 YSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISN 170
+ L++ + V+ + +++ + + VG +++ VG+ P I +
Sbjct: 88 RTPGDLVIEKAVMAMGGMLVPALTRAVAAACGDTLPVTPVGLAVVLAVVGWFIPDTRIRS 147
Query: 171 LVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELS 230
+ + A +DL+ + + S +AL A+ L+ + E S
Sbjct: 148 RSKAVRQDAAEAVLVYVDLVTLARLANQSAPRALVEAAQ--MSDHPVLAR--IRMTLERS 203
Query: 231 FLPNRQ--VAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAE 288
L + + + + + + L D+ G S+ +LR V E R L + +
Sbjct: 204 RLEQQSPWAGLDGLSDELDLPELAELVEVLRLDDQ-GASLAGALRARVHEMRDAHLNQEK 262
Query: 289 KKAASLGPKLTVPMIIFFLPVLILVIIGPAIL 320
+A + LT+ M+I L + +++I P ++
Sbjct: 263 VEAQTASESLTIWMVIPVLVLGLVLITPPLLI 294
>gi|256826296|ref|YP_003150256.1| Flp pilus assembly protein TadC [Kytococcus sedentarius DSM 20547]
gi|256689689|gb|ACV07491.1| Flp pilus assembly protein TadC [Kytococcus sedentarius DSM 20547]
Length = 211
Score = 54.1 bits (129), Expect = 3e-05, Method: Composition-based stats.
Identities = 30/143 (20%), Positives = 65/143 (45%), Gaps = 8/143 (5%)
Query: 180 KRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAF 239
LDL+ + ++SG ++ AL VA+++ PL+ + +A + A+
Sbjct: 69 VDDLAAVLDLMALALDSGCAVTDALELVADEV---PEPLAGHLRQVVAARRWGVTGADAW 125
Query: 240 ENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLT 299
+ ++ QAL + G +++R ++ R +R E+ AA L L
Sbjct: 126 KGLPSQWG-----PVAQALTLAQLAGAPPAETIRRAAADLRRDRRAALERAAARLPVFLV 180
Query: 300 VPMIIFFLPVLILVIIGPAILSI 322
+P+ F+P +L+ + P ++++
Sbjct: 181 IPLGTVFMPAFVLIAVVPLVVAL 203
>gi|225375663|ref|ZP_03752884.1| hypothetical protein ROSEINA2194_01288 [Roseburia inulinivorans DSM
16841]
gi|225212520|gb|EEG94874.1| hypothetical protein ROSEINA2194_01288 [Roseburia inulinivorans DSM
16841]
Length = 256
Score = 54.1 bits (129), Expect = 3e-05, Method: Composition-based stats.
Identities = 41/230 (17%), Positives = 86/230 (37%), Gaps = 18/230 (7%)
Query: 96 ENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVIL 155
+ N L AAG + + I LIL + +F L ++L
Sbjct: 38 SRMQNVLNAAGLKMTPETYMAYAYLKAGSIFLLILPALHVF----------PLLAIMLVL 87
Query: 156 IGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQS 215
+G + + + LV++++ I+ + + +++ + L E+ G
Sbjct: 88 LGVMVYYKETRKAEELVREKREQIEGELYRFVSTITQELKNSRDVLSMLEHYKENAGEMF 147
Query: 216 VPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVL 275
+E+ + A++ + + A F R + + + LI R G ++L
Sbjct: 148 Q---KELDIVCADMRS-SSYEAALTRFEARLNSPQLSDVVRGLIGVLR-GDDGAVYFQML 202
Query: 276 VSETRSERLMEAEKKAASLGPKL---TVPMIIFFLPVLILVIIGPAILSI 322
+ + L + KAA + PK+ + M++ FL +I I S+
Sbjct: 203 THDFKQAELQRLKAKAAKIPPKIRVFSFAMLLCFLATYFAIIGYEIIKSM 252
>gi|315107453|gb|EFT79429.1| type II secretion system F domain protein [Propionibacterium acnes
HL030PA1]
Length = 300
Score = 53.7 bits (128), Expect = 3e-05, Method: Composition-based stats.
Identities = 37/212 (17%), Positives = 84/212 (39%), Gaps = 7/212 (3%)
Query: 111 YSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISN 170
+ L++ + V+ + +++ + + VG +++ VG+ P I +
Sbjct: 88 RTPGDLVIEKAVMAMGGMLVPALARAVAAACGDTLPVTPVGLAVVLAVVGWFIPDTRIRS 147
Query: 171 LVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELS 230
+ + A +DL+ + + S +AL A+ L+ + E S
Sbjct: 148 RSKAVRQYAAEAVLVYVDLVTLARLANQSAPRALVEAAQ--MSDHPVLAR--IRMTLERS 203
Query: 231 FLPNRQ--VAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAE 288
L + + + + + + L D+ G S+ +LR V E R L + +
Sbjct: 204 RLEQQSPWAGLDELSDELDLPELAELVEVLRLDDQ-GASLAGALRARVHEMRDAHLNQEK 262
Query: 289 KKAASLGPKLTVPMIIFFLPVLILVIIGPAIL 320
+A + LT+ M+I L + +++I P ++
Sbjct: 263 VEAQTASESLTIWMVIPVLVLGLVLITPPLLI 294
>gi|283782635|ref|YP_003373389.1| hypothetical protein HMPREF0424_0122 [Gardnerella vaginalis 409-05]
gi|283441567|gb|ADB14033.1| conserved hypothetical protein [Gardnerella vaginalis 409-05]
Length = 215
Score = 53.7 bits (128), Expect = 3e-05, Method: Composition-based stats.
Identities = 33/158 (20%), Positives = 62/158 (39%), Gaps = 24/158 (15%)
Query: 187 LDLLLICVESGISIDQALRRVAEDIG-GQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
L ++++ + SG++I +AL V + GQ + L L A+ + Y R
Sbjct: 62 LHMIIVSLRSGVAITRALSAVGQVFPCGQGMWLCS----VSNALLAGDTWHEAWSSTYTR 117
Query: 246 TQMDCV-------------------RNATQALIQSDRYGTSIGDSLRVLVSETRSERLME 286
+ R +L +S YG+S L L
Sbjct: 118 QDNFELENKSKFTNRKNLDSSEILARWLMTSLKESWCYGSSPVPVLSALAQHYERNMANI 177
Query: 287 AEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIID 324
A ++++ L +L +P+ + FLP I + I P ++S++
Sbjct: 178 ARQESSRLSVRLLLPVGLCFLPSFICIGILPTVMSLMR 215
>gi|288931900|ref|YP_003435960.1| type II secretion system F domain protein [Ferroglobus placidus DSM
10642]
gi|288894148|gb|ADC65685.1| Type II secretion system F domain protein [Ferroglobus placidus DSM
10642]
Length = 634
Score = 53.7 bits (128), Expect = 3e-05, Method: Composition-based stats.
Identities = 26/153 (16%), Positives = 55/153 (35%), Gaps = 7/153 (4%)
Query: 110 EYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWIS 169
E ++ + +R I L + +F + + +I P V +
Sbjct: 355 ERAIKMRAFLRNPKLIFLLSIPAAAVFAAVFFKVMKMESLLTFSFVIAT----LPYVLLY 410
Query: 170 NLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAEL 229
+ +++ PD L L ESG++I A++ ++ Q L+EE+ ++
Sbjct: 411 EYRSYKLRKLEKHLPDFLRGLGSLNESGLNIVTAIKVLS---ATQLGVLTEEVRKIRKDI 467
Query: 230 SFLPNRQVAFENFYNRTQMDCVRNATQALIQSD 262
+ A E F +R V + ++
Sbjct: 468 EWGRLVTEALERFEDRVGSSLVSKVVSIINKAL 500
Score = 48.0 bits (113), Expect = 0.002, Method: Composition-based stats.
Identities = 31/193 (16%), Positives = 76/193 (39%), Gaps = 13/193 (6%)
Query: 146 FQLRVGAVILIGYVGFCAPSVWI----SNLVQKRQSSIKRAWPDALDLLLICVESGISID 201
F +G LI + + S + + R++ I L+L + G +
Sbjct: 98 FFFSLGLASLIALLTLLVVRNILLRIPSFIARSRKAKIDATLYHVASLMLGMAKGGTPLL 157
Query: 202 QALRRVAEDIGGQSVPLSEEMLLTIAELS-FLPNRQVAFENFYNRTQMDCVRNATQALIQ 260
+ R VAE+ + + +E + + ++ F + + + T +R+ + L
Sbjct: 158 ELFRTVAEE-RHVTGEVGKEFSIIVRNVTVFGKDIITSIKEVAATTPSQKLRDFLEDLAG 216
Query: 261 SDRYGTSIGDSLRVLVSETRSERLMEAE------KKAASLGPKLTVPMIIFFLPVLILV- 313
G+S+ + L ++ ER + + A + + + +F L V +++
Sbjct: 217 VLEGGSSLSEFLEFKIAHLAEERERAYQLYISSYEILAEIYVAMLIVAPLFSLIVFVVMN 276
Query: 314 IIGPAILSIIDTM 326
+IG + ++++ M
Sbjct: 277 MIGESTINLMKAM 289
>gi|116694143|ref|YP_728354.1| flp pilus assembly protein TadB [Ralstonia eutropha H16]
gi|113528642|emb|CAJ94989.1| flp pilus assembly protein TadB [Ralstonia eutropha H16]
Length = 308
Score = 53.7 bits (128), Expect = 3e-05, Method: Composition-based stats.
Identities = 32/267 (11%), Positives = 84/267 (31%), Gaps = 19/267 (7%)
Query: 61 TSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVR 120
+++ + L+ + + + + + L ++ + R++ + +
Sbjct: 28 ARARREQQQAFLQAQTEQVRLRYAQAPDPALQLPARDLRRRWDDFLRRADLAPTRRTAIV 87
Query: 121 LVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIK 180
+ P++ L + + A N V++ +
Sbjct: 88 WITPVVLCTLAGAVAGQWLGAVSALIVALAVAAFAA------------WNRVRRLHKKLL 135
Query: 181 RAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFE 240
P LD ++ + G S+ A + I PL + ++ + A
Sbjct: 136 SQLPGFLDGVVRLMTIGSSVPAAFQ---NSIANTEAPLRQCLVQAVHLQRAGKELDQAVL 192
Query: 241 NFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV 300
+++ + L S RYG + + R + E A S +L+
Sbjct: 193 QVGRVYKVEELVLVASVLRLSVRYGGRADVVMERTAAFMRDREQAQRELMALSAETRLSA 252
Query: 301 PMIIFFLPVLI---LVIIGPAILSIID 324
I+ LP+++ L ++ + ++
Sbjct: 253 -WILGLLPLVVAGGLFMLNAGYILMMW 278
>gi|239934067|ref|ZP_04691020.1| integral membrane protein [Streptomyces ghanaensis ATCC 14672]
gi|291442506|ref|ZP_06581896.1| integral membrane protein [Streptomyces ghanaensis ATCC 14672]
gi|291345401|gb|EFE72357.1| integral membrane protein [Streptomyces ghanaensis ATCC 14672]
Length = 294
Score = 53.7 bits (128), Expect = 3e-05, Method: Composition-based stats.
Identities = 32/190 (16%), Positives = 71/190 (37%), Gaps = 3/190 (1%)
Query: 113 LNILLVVRLVVPIIFLILGIIW-IFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNL 171
++ + + + L+ ++ I + PF + + I + F P + + +
Sbjct: 84 PGQFMLKKAALAALGLVCPVLVTIPWLIAGISLPFYVPAVVGLTIAALLFVTPDLAVRDQ 143
Query: 172 VQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSF 231
++ + A LDL+ + + +AL R A +G L + L A L
Sbjct: 144 AKRAREEFAHALAAYLDLVALKRAADAGPTEALERAAA-VGQGWPFLYLQSALRRARLEK 202
Query: 232 LPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKA 291
+P A + + + + + S G ++ +LR + +E L + +A
Sbjct: 203 IPPY-QALTDLAEEYDLPVLDDVADIMRGSATDGAAVYKALRARTAALNAELLADQAAEA 261
Query: 292 ASLGPKLTVP 301
+ K+T P
Sbjct: 262 NAASEKMTAP 271
>gi|226325874|ref|ZP_03801392.1| hypothetical protein COPCOM_03687 [Coprococcus comes ATCC 27758]
gi|225205998|gb|EEG88352.1| hypothetical protein COPCOM_03687 [Coprococcus comes ATCC 27758]
Length = 141
Score = 53.7 bits (128), Expect = 3e-05, Method: Composition-based stats.
Identities = 24/123 (19%), Positives = 49/123 (39%), Gaps = 7/123 (5%)
Query: 168 ISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQ---SVPLSEEMLL 224
I +K + +R + DAL L + G S++ A++ V D+ + E
Sbjct: 2 IRQAEEKGKRCFERQFQDALQSLEAQLNVGYSMENAIKEVQRDLQIMYDRHTLIVREFTY 61
Query: 225 TIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTS----IGDSLRVLVSETR 280
+ +L+ + A+++F R + V + R G I +++R L +
Sbjct: 62 MVRQLNLNVTAEAAWKDFAARVALPEVDTFVTVFSLAKRSGGDSILIIKNAVRQLGDKAE 121
Query: 281 SER 283
+R
Sbjct: 122 VKR 124
>gi|329946364|ref|ZP_08293931.1| bacterial type II secretion system protein F domain protein
[Actinomyces sp. oral taxon 170 str. F0386]
gi|328527340|gb|EGF54338.1| bacterial type II secretion system protein F domain protein
[Actinomyces sp. oral taxon 170 str. F0386]
Length = 283
Score = 53.7 bits (128), Expect = 3e-05, Method: Composition-based stats.
Identities = 32/166 (19%), Positives = 63/166 (37%), Gaps = 4/166 (2%)
Query: 127 FLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDA 186
+LG I + L+ + + P + IS+ + R++ ++ WP+A
Sbjct: 51 MFVLGSIGLGLLIGLVFLGMSRAWPVAVSFTAIFTAIPFLVISSRARNRRTRLREVWPEA 110
Query: 187 LDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRT 246
+D L+ V +G+S+ +AL + E P + ++ + + + R
Sbjct: 111 VDTLVSGVRAGMSLPEALTNLGERGPEVVRP---QFRAFASDYAATARFDSSLDRLKARF 167
Query: 247 QMDCVRNATQALIQSDRY-GTSIGDSLRVLVSETRSERLMEAEKKA 291
+AL + GT +G LR L R + E +A
Sbjct: 168 ADPVADRIVEALRLAHEVGGTDLGTLLRSLSQMLREDMRTRGELEA 213
>gi|323702225|ref|ZP_08113891.1| hypothetical protein DesniDRAFT_1103 [Desulfotomaculum nigrificans
DSM 574]
gi|323532715|gb|EGB22588.1| hypothetical protein DesniDRAFT_1103 [Desulfotomaculum nigrificans
DSM 574]
Length = 260
Score = 53.7 bits (128), Expect = 4e-05, Method: Composition-based stats.
Identities = 25/164 (15%), Positives = 65/164 (39%), Gaps = 7/164 (4%)
Query: 148 LRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRV 207
+ V + +++ +G+ P I+ + ++R ++ D + +G S + + +
Sbjct: 54 MTVLSGLILAVLGWKLPGYIINLVREERIRQVREKAKDFVMAASGLYSTGQSDTEVISTM 113
Query: 208 AEDIGGQSVPLSEEM--LLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYG 265
++ + PL+ E+ ++ ++ + + + A+ + D G
Sbjct: 114 SKRL---PEPLASELHEMVVQRHMNDQVSYPSMLRRLGEKYNVPEFAAASAIIEAGDIVG 170
Query: 266 TSIGDS--LRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFL 307
+ + L L + R + E+K A+L PK+ +I L
Sbjct: 171 GPVAKANGLMKLGAAIRMRSKLLLERKKANLEPKIASMFVILVL 214
>gi|294791163|ref|ZP_06756320.1| putative bacterial type II secretion system protein F domain
protein [Scardovia inopinata F0304]
gi|294457634|gb|EFG25988.1| putative bacterial type II secretion system protein F domain
protein [Scardovia inopinata F0304]
Length = 190
Score = 53.7 bits (128), Expect = 4e-05, Method: Composition-based stats.
Identities = 31/166 (18%), Positives = 65/166 (39%), Gaps = 12/166 (7%)
Query: 168 ISNLVQKRQSSIKRAWP--DALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLT 225
+++L R + +P L+++ + + G S+ +A V + L +
Sbjct: 28 LNSLDSPRSQRDDQVFPVQLILEMMTVAIRQGASVPRACEAVGMAMKT---DLGSCLCQI 84
Query: 226 IAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSD----RYG-TSIGDSLRVLVSETR 280
L + + A+ R L Q+ R+G + I + E R
Sbjct: 85 SQSLYRGASWEDAW-GLSRSLPSQTDRQTCDLLEQTLEPSWRHGASPIIRIETAIEEENR 143
Query: 281 SERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
R + A+ L K+ +P+ + FLP +++ + P++ I+TM
Sbjct: 144 -LRSRAMDDAASKLSVKVLLPLGLCFLPAFVILTVIPSLAGWIETM 188
>gi|258650978|ref|YP_003200134.1| type II secretion system protein [Nakamurella multipartita DSM
44233]
gi|258554203|gb|ACV77145.1| type II secretion system protein [Nakamurella multipartita DSM
44233]
Length = 267
Score = 53.7 bits (128), Expect = 4e-05, Method: Composition-based stats.
Identities = 32/148 (21%), Positives = 69/148 (46%), Gaps = 9/148 (6%)
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVPLSEE------MLLTIAELSFLPNRQVAFEN 241
+LL ++SG+++ ALR V+E +G Q ++ + A L+ + A+
Sbjct: 123 ELLAAALDSGLAMATALRAVSEVLGDQGPSAGQQQSALAALDSVAAMLALGADTDTAWRA 182
Query: 242 FYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVP 301
+ + A + +S GT++ D++R ++ R + E+ + A G +T P
Sbjct: 183 VDADADLAPLAAAAR---RSAVGGTTLADAVREHAAQLREQARDESVRSAGRAGVLMTAP 239
Query: 302 MIIFFLPVLILVIIGPAILSIIDTMKDH 329
+ + FLP + + + P +L ++ + H
Sbjct: 240 LGVCFLPAFLCLGLAPVVLGLLGRLTIH 267
>gi|76800734|ref|YP_325742.1| transmembrane protein (type II secretion system proteins TadC)
[Natronomonas pharaonis DSM 2160]
gi|76556599|emb|CAI48170.1| transmembrane protein (homolog 4 to type II secretion system
proteins TadC) [Natronomonas pharaonis DSM 2160]
Length = 615
Score = 53.7 bits (128), Expect = 4e-05, Method: Composition-based stats.
Identities = 32/182 (17%), Positives = 61/182 (33%), Gaps = 16/182 (8%)
Query: 118 VVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQS 177
+ +P + G++W G + V L+GY + P IS +
Sbjct: 343 AAVVFLPPASALGGLLWWVGEPAVN----------VALLGYAAYGLPVGAISVRRARLDD 392
Query: 178 SIKRAWPDALDLLLICVESGISIDQALRRVAED-----IGGQSVPLSEEMLLTIAELSFL 232
+ R D + + V G D+A++ VAE+ + L+ + LT
Sbjct: 393 AKDREIRDFVHAVAGHVSLGKPFDEAVQTVAEEVDFGPLQADVDDLAFRLGLTTG-TRDG 451
Query: 233 PNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAA 292
R+ A + F R + + G+ + L +E S + ++A
Sbjct: 452 GTRREALDRFVERVGTPLSEQTVGLVTGALSVGSDAETTFETLQTEIGSLYHQRKKLRSA 511
Query: 293 SL 294
Sbjct: 512 MA 513
Score = 40.2 bits (93), Expect = 0.37, Method: Composition-based stats.
Identities = 21/127 (16%), Positives = 43/127 (33%), Gaps = 7/127 (5%)
Query: 166 VWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLT 225
++ V R+++I+R P A+ L + + LRRVA+ S E+
Sbjct: 118 AYLRWRVDARRTAIERTLPGAVRYLRALADGSEGRREMLRRVAK--QDAYGETSAELRRV 175
Query: 226 IAELSFLPNRQVAFENFYNRTQMDCVRN-ATQALIQSDRYGT-SIGDSLRVLVSET---R 280
+ + + + T + + + G+ ++ LR+ R
Sbjct: 176 LRKAELTGSLDSGLRSVARETPSRELLSPFLLKFREHANQGSDALQGYLRMESRMLSHQR 235
Query: 281 SERLMEA 287
S A
Sbjct: 236 SRERQRA 242
>gi|289424130|ref|ZP_06425913.1| type II secretion system F domain protein [Propionibacterium acnes
SK187]
gi|289154827|gb|EFD03509.1| type II secretion system F domain protein [Propionibacterium acnes
SK187]
gi|313792522|gb|EFS40608.1| type II secretion system F domain protein [Propionibacterium acnes
HL110PA1]
gi|313803523|gb|EFS44705.1| type II secretion system F domain protein [Propionibacterium acnes
HL110PA2]
gi|313814176|gb|EFS51890.1| type II secretion system F domain protein [Propionibacterium acnes
HL025PA1]
gi|313839670|gb|EFS77384.1| type II secretion system F domain protein [Propionibacterium acnes
HL086PA1]
gi|315078859|gb|EFT50877.1| type II secretion system F domain protein [Propionibacterium acnes
HL053PA2]
gi|327457368|gb|EGF04023.1| type II secretion system F domain protein [Propionibacterium acnes
HL092PA1]
Length = 300
Score = 53.7 bits (128), Expect = 4e-05, Method: Composition-based stats.
Identities = 37/212 (17%), Positives = 84/212 (39%), Gaps = 7/212 (3%)
Query: 111 YSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISN 170
+ L++ + V+ + +++ + + VG +++ VG+ P I +
Sbjct: 88 RTPGDLVIEKAVMAMGGMLVPALARAVAAACGDTLPVTPVGLAVVLAVVGWFIPDTRIRS 147
Query: 171 LVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELS 230
+ + A +DL+ + + S +AL A+ L+ + E S
Sbjct: 148 RSKAVRQDAAEAVLVYVDLVTLARLANQSAPRALVEAAQ--MSDHPVLAR--IRMTLERS 203
Query: 231 FLPNRQ--VAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAE 288
L + + + + + + L D+ G S+ +LR V E R L + +
Sbjct: 204 RLEQQSPWAGLDGLSDELDLPELAELVEVLRLDDQ-GASLAGALRARVHEMRDAHLNQEK 262
Query: 289 KKAASLGPKLTVPMIIFFLPVLILVIIGPAIL 320
+A + LT+ M+I L + +++I P ++
Sbjct: 263 VEAQTASESLTIWMVIPVLVLGLVLITPPLLI 294
>gi|307354769|ref|YP_003895820.1| type II secretion system F domain-containing protein [Methanoplanus
petrolearius DSM 11571]
gi|307158002|gb|ADN37382.1| Type II secretion system F domain protein [Methanoplanus
petrolearius DSM 11571]
Length = 463
Score = 53.7 bits (128), Expect = 4e-05, Method: Composition-based stats.
Identities = 24/172 (13%), Positives = 65/172 (37%), Gaps = 11/172 (6%)
Query: 143 EYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQ 202
+ ILI + + + + +KR+ + + L ++ +D
Sbjct: 118 PQGMDQFLIFAILIAITPYGI-DITLQKMAKKRKEELFTEFLFKLSEMMRG-----GLDP 171
Query: 203 ALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSD 262
++ V E + L+ + + +++ + + A + T + + T+ +I++
Sbjct: 172 -IKSVNELAKAEIGVLTPHIRIAANRMAYGDSFERAMKAMARSTGSELIARYTELVIEAS 230
Query: 263 RYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVI 314
G + D + + RS +E +K+ +I +F ++I+ I
Sbjct: 231 YSGGGVSDLILKCSDDMRSILSIERQKEGDLKQ----FVLIFYFAQIIIIFI 278
>gi|237786541|ref|YP_002907246.1| hypothetical protein ckrop_1995 [Corynebacterium kroppenstedtii DSM
44385]
gi|237759453|gb|ACR18703.1| hypothetical protein ckrop_1995 [Corynebacterium kroppenstedtii DSM
44385]
Length = 158
Score = 53.7 bits (128), Expect = 4e-05, Method: Composition-based stats.
Identities = 31/153 (20%), Positives = 62/153 (40%), Gaps = 7/153 (4%)
Query: 175 RQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPN 234
R ++ A D LDL+ C+ G+ + A+ VA+ G Q V + T L+ +
Sbjct: 13 RAGAMLNAAAD-LDLVKACLSCGLPVGAAVGAVADSGGSQFVDV---WKGTANRLAMGVD 68
Query: 235 RQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASL 294
+A+ + + + + + +S R G + + L R +A +A
Sbjct: 69 SDIAW---ALCAENEVLGDFARRARRSARSGAQLAADIGALSMHMRHRATDQAVAEAEKA 125
Query: 295 GPKLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
+ +P+ FLP I V + P + ++ +
Sbjct: 126 SVYVALPLSFCFLPAFIAVGLVPIAIGLLSGLS 158
>gi|258514754|ref|YP_003190976.1| hypothetical protein Dtox_1489 [Desulfotomaculum acetoxidans DSM
771]
gi|257778459|gb|ACV62353.1| hypothetical protein Dtox_1489 [Desulfotomaculum acetoxidans DSM
771]
Length = 289
Score = 53.7 bits (128), Expect = 4e-05, Method: Composition-based stats.
Identities = 21/177 (11%), Positives = 68/177 (38%), Gaps = 12/177 (6%)
Query: 154 ILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGG 213
+++ + + + +++++ I+ P + + +++ + +
Sbjct: 119 VILAVLAYFKETRKADERLKEKREQIEGELPRFVSTIEQTLKASRDVLAMME---NYKKN 175
Query: 214 QSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLR 273
+ E+ + A++ + + A F R + + + LI R G +
Sbjct: 176 AGPAFAGELDVLTADMRS-SSYEAALTRFEARLNSPMLSDVVRGLIGVLR-GDDSAVYFQ 233
Query: 274 VLVSETRSERLMEAEKKAASLGPKL---TVPMIIFFLPVLILVIIGPAILSIIDTMK 327
+L + ++ L + +A + PK+ + M++ FL + +I + I+ ++
Sbjct: 234 MLAHDFKALELQRLKGQAQKIPPKIRIFSFIMLMCFLLTYMAIIA----MQILSSLG 286
>gi|167836790|ref|ZP_02463673.1| hypothetical protein Bpse38_09905 [Burkholderia thailandensis
MSMB43]
Length = 221
Score = 53.3 bits (127), Expect = 4e-05, Method: Composition-based stats.
Identities = 33/176 (18%), Positives = 55/176 (31%), Gaps = 12/176 (6%)
Query: 125 IIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWP 184
+ + +W LL GA +++ W+ + +QKR+ I R P
Sbjct: 2 VAATAVATLWAGLRGGLLAAVAAFVAGATLVV---------FWLVSRMQKRRLRIVRQLP 52
Query: 185 DALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYN 244
LD ++ V G S+ A + + PL + L A
Sbjct: 53 SFLDGIVRLVTLGNSVPAAFQ---ATLQTTEAPLRGCLDHVSRMLRSGVEIDRAMVYVAT 109
Query: 245 RTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV 300
++ L S +YG L + R E E A S +L+
Sbjct: 110 LYRIKEFELVGSVLRLSVKYGGRADVMLDRMAVFMRDLEQAERELVAMSAETRLSA 165
>gi|319937913|ref|ZP_08012313.1| hypothetical protein HMPREF9488_03149 [Coprobacillus sp. 29_1]
gi|319806819|gb|EFW03458.1| hypothetical protein HMPREF9488_03149 [Coprobacillus sp. 29_1]
Length = 323
Score = 53.3 bits (127), Expect = 4e-05, Method: Composition-based stats.
Identities = 28/204 (13%), Positives = 71/204 (34%), Gaps = 10/204 (4%)
Query: 127 FLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDA 186
+ + F + ++ G++ V + N + K + ++K + +
Sbjct: 92 LSLYSVALFFVGAVSVNLFIGAGPLLMLYFGFLAIATVYVLLMNKMDKTRKALKEEFMEK 151
Query: 187 LDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRT 246
L + + G++ A+ + + G S+ ++ E+ ++ + F Y R
Sbjct: 152 LRDIGAHLSVGLNFITAINE-SLNSGNTSIVMARELSSVKDDIYSGKSYSETFMKMYERL 210
Query: 247 QMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAE----KKAASLGPKLTVPM 302
Q+ ++ Q + G + D + + +R + E + A K + +
Sbjct: 211 QISEIKAFAQVCEIYEETGGNFLDIIYAFEDSYKMKRKVLQENEVYEAAMRTEQKFVIGI 270
Query: 303 IIFFLPVLILVIIGPAILSIIDTM 326
P + +V G + II
Sbjct: 271 -----PSICIVAFGVFMPEIIRGF 289
>gi|258511163|ref|YP_003184597.1| Flp pilus assembly protein TadB-like protein [Alicyclobacillus
acidocaldarius subsp. acidocaldarius DSM 446]
gi|257477889|gb|ACV58208.1| Flp pilus assembly protein TadB-like protein [Alicyclobacillus
acidocaldarius subsp. acidocaldarius DSM 446]
Length = 284
Score = 53.3 bits (127), Expect = 5e-05, Method: Composition-based stats.
Identities = 30/219 (13%), Positives = 74/219 (33%), Gaps = 19/219 (8%)
Query: 117 LVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQ 176
+ R+ + L+ I+++ G+ + + F P +++ + ++ +
Sbjct: 72 IAYRVSFAMPLLVAAILFVIGWY------------WAMPLSLCAFFLPYFYLNRVYKRAR 119
Query: 177 SSIKRAWPDALDLLLICVESGISIDQALR----RVAEDIGGQSVPLSEEMLLTIAELSFL 232
+KR A L+ + E+G I++++ + + +S + +
Sbjct: 120 LLLKRQLRQARLLIALLTEAGAPIERSIAAAESVTSHPLKPYLRDVSIAIGASEDAKDAG 179
Query: 233 P---NRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEK 289
AF R + Q L QS RY T + D + + R EAE
Sbjct: 180 MRVQTVVEAFMGMAERLHLPEATQFAQLLTQSARYNTPLVDMMFTSLDIEERIRDTEAEL 239
Query: 290 KAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMKD 328
+ + K++ + + + + + +
Sbjct: 240 RYNNAISKISYISTLGLGIPVFGYLFLAVFSYALQILGN 278
>gi|331089204|ref|ZP_08338106.1| hypothetical protein HMPREF1025_01689 [Lachnospiraceae bacterium
3_1_46FAA]
gi|330405756|gb|EGG85285.1| hypothetical protein HMPREF1025_01689 [Lachnospiraceae bacterium
3_1_46FAA]
Length = 249
Score = 53.3 bits (127), Expect = 5e-05, Method: Composition-based stats.
Identities = 26/192 (13%), Positives = 68/192 (35%), Gaps = 4/192 (2%)
Query: 141 LLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISI 200
L+ Y F + + + + +L +K++ + + +A+ + +++G S+
Sbjct: 30 LITYVFYESFLPIFFMIPIWVIYARDGLRDLCRKKEKEFRVQFSNAIQAMGAALKAGYSV 89
Query: 201 DQALRRVAEDIGGQSVP---LSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQA 257
+ A+R +D+ + +E + +L E F R + + +
Sbjct: 90 ENAIREAEKDLAPMYEENVRIRKEFRKMVHQLDMKMPAVSVMEQFSERMKQEDTEDFVTV 149
Query: 258 LIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGP 317
+ G +R V + E E + KL I+ +P I++ +
Sbjct: 150 FSSAKMSGGDSISIIRNAVKIISGKIDTEQEIQTMFASKKLEFE-IMCAVPFFIILYMKL 208
Query: 318 AILSIIDTMKDH 329
+ + ++
Sbjct: 209 TFGEFLSVLYEN 220
>gi|117620900|ref|YP_855995.1| Flp pilus assembly protein TadB [Aeromonas hydrophila subsp.
hydrophila ATCC 7966]
gi|117562307|gb|ABK39255.1| Flp pilus assembly protein TadB [Aeromonas hydrophila subsp.
hydrophila ATCC 7966]
Length = 294
Score = 53.3 bits (127), Expect = 5e-05, Method: Composition-based stats.
Identities = 24/147 (16%), Positives = 46/147 (31%), Gaps = 7/147 (4%)
Query: 169 SNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAE 228
L Q+ + P+ +D ++ + G + VA G +S E
Sbjct: 109 QQLQQRALEQFRTRLPEVIDGMIRALRVGAPLADIFLLVARQQRGL---MSRLFAQMHDE 165
Query: 229 LSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAE 288
L + R + + T L G + + L LV R+ + + A
Sbjct: 166 LQVGQPVAQVMQQAAGRVAVAEFQFLTIVLSLQQETGGRLSEVLAQLVETLRARQTLAAS 225
Query: 289 KKAASL----GPKLTVPMIIFFLPVLI 311
+ + K+ + + L VL
Sbjct: 226 IQTITAESRNAAKVLAALPVIILLVLF 252
>gi|237798378|ref|ZP_04586839.1| type II secretion system protein, F domain [Pseudomonas syringae
pv. oryzae str. 1_6]
gi|331021230|gb|EGI01287.1| type II secretion system protein, F domain [Pseudomonas syringae
pv. oryzae str. 1_6]
Length = 294
Score = 53.3 bits (127), Expect = 5e-05, Method: Composition-based stats.
Identities = 36/216 (16%), Positives = 78/216 (36%), Gaps = 11/216 (5%)
Query: 114 NILLVVRLVVPIIFLILGI-IWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLV 172
+ L +P + L + ++ + G ++ +G +++S
Sbjct: 57 RAFIRAGLGLPTERMGLALTLYALLILIGYAMADGIGAGCALVGVPLGL---RLFVSWRS 113
Query: 173 QKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFL 232
+ R + P LD + ++SG ++ A V I + PL E M +
Sbjct: 114 RVRVRRMIEQLPQLLDHSVRSLKSGRTLADA---VLFGITAANQPLKEGMSRIERNVQLG 170
Query: 233 PNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAA 292
+ A +F + D L + RYG + + + L+ R + +A
Sbjct: 171 VSLPDAARDFAELYESDEFHLFALGLRVNHRYGGNASELMENLIRLIRDREQASRQLRAM 230
Query: 293 SLGPKLTVPMIIFFLPVLI---LVIIGPAILSIIDT 325
+ ++T +++ LPV + + + PA L +
Sbjct: 231 TGETRMTA-LVLGLLPVGMAGYFMAVNPAYLMHMWN 265
>gi|225351275|ref|ZP_03742298.1| hypothetical protein BIFPSEUDO_02867 [Bifidobacterium
pseudocatenulatum DSM 20438]
gi|225158731|gb|EEG71973.1| hypothetical protein BIFPSEUDO_02867 [Bifidobacterium
pseudocatenulatum DSM 20438]
Length = 174
Score = 53.3 bits (127), Expect = 5e-05, Method: Composition-based stats.
Identities = 32/141 (22%), Positives = 58/141 (41%), Gaps = 9/141 (6%)
Query: 183 WPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENF 242
P L++L + + G SI +AL V + G + +L+ + A+ +
Sbjct: 42 LPLVLEMLSVAIRQGSSIPRALIAVGDIAAG---EFGAGLRSAGEQLNKGVSWDDAWPDD 98
Query: 243 YNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPM 302
+ + A S G S + L V + + + E+ AA L +L +P
Sbjct: 99 GDLAVVRD------AFASSWHSGASPVERLETAVEQLDWDERSQIEQAAAKLSVRLLLPT 152
Query: 303 IIFFLPVLILVIIGPAILSII 323
+ FLP + V I PA++S +
Sbjct: 153 GLCFLPAFVAVGIIPAVMSFV 173
>gi|314922440|gb|EFS86271.1| type II secretion system F domain protein [Propionibacterium acnes
HL001PA1]
gi|314965661|gb|EFT09760.1| type II secretion system F domain protein [Propionibacterium acnes
HL082PA2]
gi|314982825|gb|EFT26917.1| type II secretion system F domain protein [Propionibacterium acnes
HL110PA3]
gi|315091476|gb|EFT63452.1| type II secretion system F domain protein [Propionibacterium acnes
HL110PA4]
gi|315094230|gb|EFT66206.1| type II secretion system F domain protein [Propionibacterium acnes
HL060PA1]
gi|315104882|gb|EFT76858.1| type II secretion system F domain protein [Propionibacterium acnes
HL050PA2]
gi|327329209|gb|EGE70969.1| putative bacterial type II secretion system protein F domain
protein [Propionibacterium acnes HL103PA1]
Length = 147
Score = 53.3 bits (127), Expect = 5e-05, Method: Composition-based stats.
Identities = 33/144 (22%), Positives = 66/144 (45%), Gaps = 6/144 (4%)
Query: 180 KRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAF 239
P+AL +L +E+G+ + A+ VAE + G P +E++ + L+ A+
Sbjct: 6 AAQLPEALLMLSSAMEAGLPLRSAVTTVAESLEG---PCAEDLRRLASSLAAGVPDSRAW 62
Query: 240 ENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLT 299
+ + ++ R+ Q + ++ G I + L ++ + +AEKKA G
Sbjct: 63 NDLAS---VEVWRDPAQDVSRAVNSGEGISELLSAHAAQLQVAAAEKAEKKARKAGVDAI 119
Query: 300 VPMIIFFLPVLILVIIGPAILSII 323
P++ LP +LV + P I ++
Sbjct: 120 GPLVCCHLPAFLLVGVVPIIAGMV 143
>gi|297243108|ref|ZP_06927046.1| Flp pilus assembly protein TadC [Gardnerella vaginalis AMD]
gi|296889319|gb|EFH28053.1| Flp pilus assembly protein TadC [Gardnerella vaginalis AMD]
Length = 215
Score = 53.3 bits (127), Expect = 5e-05, Method: Composition-based stats.
Identities = 33/158 (20%), Positives = 62/158 (39%), Gaps = 24/158 (15%)
Query: 187 LDLLLICVESGISIDQALRRVAEDIG-GQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
L ++++ + SG++I +AL V + GQ + L L A+ + Y R
Sbjct: 62 LHMIIVSLRSGVAITKALSAVGQVFPCGQGMWLCS----VSNALLAGDTWHEAWSSTYTR 117
Query: 246 TQMDCV-------------------RNATQALIQSDRYGTSIGDSLRVLVSETRSERLME 286
+ R +L +S YG+S L L
Sbjct: 118 QDNFELENKSKFTNRKNLDSSEILARWLMTSLKESWCYGSSPVPVLSALAQHYERNMANI 177
Query: 287 AEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIID 324
A ++++ L +L +P+ + FLP I + I P ++S++
Sbjct: 178 ARQESSRLSVRLLLPVGLCFLPSFICIGILPTVMSLMR 215
>gi|262200535|ref|YP_003271743.1| type II secretion system F domain-containing protein [Gordonia
bronchialis DSM 43247]
gi|262083882|gb|ACY19850.1| Type II secretion system F domain protein [Gordonia bronchialis DSM
43247]
Length = 202
Score = 53.0 bits (126), Expect = 6e-05, Method: Composition-based stats.
Identities = 30/146 (20%), Positives = 56/146 (38%), Gaps = 8/146 (5%)
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENF-YN 244
A DL +C+ +G+ + A A L+ + L + A+ +
Sbjct: 56 AFDLFAVCLRAGLPVGTA---AATVAASAPASLAGPLTEVADLLGLGADPDTAWSVLTAS 112
Query: 245 RTQM----DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV 300
T + + +S R G+S+ L L ETR + A A G ++
Sbjct: 113 DTPVVGAQPHLDALASMARRSARAGSSLAAGLAELADETRRQAHDTATAAAERAGVAISG 172
Query: 301 PMIIFFLPVLILVIIGPAILSIIDTM 326
P+ + FLP + + I P ++ + T+
Sbjct: 173 PLGLCFLPAFVCLGIVPVVIGLASTV 198
>gi|255994749|ref|ZP_05427884.1| putative bacterial type II secretion system protein F domain
protein [Eubacterium saphenum ATCC 49989]
gi|255993462|gb|EEU03551.1| putative bacterial type II secretion system protein F domain
protein [Eubacterium saphenum ATCC 49989]
Length = 353
Score = 53.0 bits (126), Expect = 6e-05, Method: Composition-based stats.
Identities = 27/158 (17%), Positives = 61/158 (38%), Gaps = 4/158 (2%)
Query: 168 ISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLS-EEMLLTI 226
+ + ++ + P ++ ++ + +G + A++R +E E++ +
Sbjct: 197 LEKIRKESHQDVLMNLPSFINRYILLINAGAMPEDAMKRASESEKNMFGKGYFSELITDL 256
Query: 227 AEL--SFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERL 284
+ + + R + T + S G+ + L ER
Sbjct: 257 YDRAEKSKSSLSKELYDAALRLGIWQFIRVTSIITDSMYTGSDMSHKLTREAKMLWFERK 316
Query: 285 MEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
AE + KLT+P+++ L VL++V IGPA + +
Sbjct: 317 KLAESRGRLAEVKLTMPLLLLLL-VLMIVTIGPATMDM 353
>gi|293192038|ref|ZP_06609362.1| putative bacterial type II secretion system protein F domain
protein [Actinomyces odontolyticus F0309]
gi|292820386|gb|EFF79375.1| putative bacterial type II secretion system protein F domain
protein [Actinomyces odontolyticus F0309]
Length = 425
Score = 53.0 bits (126), Expect = 6e-05, Method: Composition-based stats.
Identities = 55/277 (19%), Positives = 103/277 (37%), Gaps = 15/277 (5%)
Query: 52 REILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEY 111
R R + + + +AS L R S L + + L AI + L A R
Sbjct: 162 RRAERAPGVAASRVSAASVALACRFSHDLGAPLADV-LDAIGSAIDDAQALEEA--RRVA 218
Query: 112 SLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNL 171
+ L+ R++ + + + G Y +G V + A +
Sbjct: 219 AAGPLMSARVLAALPLVGIACALALGASPWQFYMGGTVGRMCAFVGGVAWAAGVASCRRI 278
Query: 172 VQK-RQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELS 230
+ + R+ A DL+ + G +I +AL +A+ ++ + A L
Sbjct: 279 LARCRRVEEGIDGALACDLVASALACGAAIPRALDALADASTTEA------LTWAAASLR 332
Query: 231 FLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKK 290
A+E+ +R+ AL S GT+ L + R RL++A+ +
Sbjct: 333 LGATWADAWEDTPE--WSHPLRD---ALEASWTSGTAPETLLARSAAWERRSRLVDAKAQ 387
Query: 291 AASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
A L +L P+ +FFLP + + I P + ++ +
Sbjct: 388 AEELSVRLVGPLGVFFLPAFLSLGIAPLLAHLVGGIG 424
>gi|227832053|ref|YP_002833760.1| hypothetical protein cauri_0223 [Corynebacterium aurimucosum ATCC
700975]
gi|262184093|ref|ZP_06043514.1| hypothetical protein CaurA7_08886 [Corynebacterium aurimucosum ATCC
700975]
gi|227453069|gb|ACP31822.1| putative membrane protein [Corynebacterium aurimucosum ATCC 700975]
Length = 185
Score = 53.0 bits (126), Expect = 6e-05, Method: Composition-based stats.
Identities = 32/140 (22%), Positives = 62/140 (44%), Gaps = 11/140 (7%)
Query: 187 LDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRT 246
L+L C+E+G+S A+ VAE S SE A + A+ ++
Sbjct: 56 LELFAACLEAGLSTRSAVLAVAE----ASPQWSE----AAALIGVGVPMNTAWSALASQP 107
Query: 247 QMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFF 306
++ + TQ S G ++ LV++ R+E +A +A G + P+ + F
Sbjct: 108 HLEELVRLTQL---SGESGAAMATGCHRLVAQLRAEASAQATARAERAGVFIAAPLAVCF 164
Query: 307 LPVLILVIIGPAILSIIDTM 326
LP +++ + P ++S+ +
Sbjct: 165 LPAFLVLGLIPVLISLGQQL 184
>gi|308234326|ref|ZP_07665063.1| Type II secretion system F domain protein [Atopobium vaginae DSM
15829]
Length = 314
Score = 53.0 bits (126), Expect = 6e-05, Method: Composition-based stats.
Identities = 28/190 (14%), Positives = 67/190 (35%), Gaps = 17/190 (8%)
Query: 122 VVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKR 181
V +I ++ +I + + + P V L Q +++++
Sbjct: 88 AVTLILFVVMLISVLLFSRSFAAPLLCAACCVCACPMFA--------HRLEQLQKTTLCH 139
Query: 182 AWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFEN 241
PD +L + + +G + QA+ V + G++ + +L + +
Sbjct: 140 DMPDIFRMLGMALAAGQTFSQAIAYVGQHQPGEA---GKAFQKASLKLRCGSSISEVLND 196
Query: 242 FYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRS----ERLMEAEKKAASLGPK 297
+ Q V+ AL S R G + R ++L+ + A L +
Sbjct: 197 MAHTLQAPGVKFLITALFISQRTGAPLKSLFRQSAQLVEQQEKFKKLLSVKTAQARLSIR 256
Query: 298 L--TVPMIIF 305
+ ++P+++
Sbjct: 257 VVSSLPLVLI 266
>gi|320100494|ref|YP_004176086.1| type II secretion system F domain-containing protein
[Desulfurococcus mucosus DSM 2162]
gi|319752846|gb|ADV64604.1| Type II secretion system F domain protein [Desulfurococcus mucosus
DSM 2162]
Length = 580
Score = 53.0 bits (126), Expect = 7e-05, Method: Composition-based stats.
Identities = 46/245 (18%), Positives = 88/245 (35%), Gaps = 14/245 (5%)
Query: 75 RDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIW 134
R + + + + + + NI + ++ +G + + +V I+ L I
Sbjct: 2 RFWDWVYKYFNWIGKRILKMFPNIGDSIKKSGIHMHS--EVYAALTGLVFIVSLAASITL 59
Query: 135 IFGYDKLLEYPFQLRVGAVI--LIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLI 192
L P + + I L+ + PS++ SN SI +P L
Sbjct: 60 TILLALLFRSPLGVAITVSIPTLVLLLMVSLPSLYASNRAS----SIDGEFPFLSSYLST 115
Query: 193 CVESGISIDQALRRV--AEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDC 250
V SG+S A R+ I ++ L++ +L + AF+ RT
Sbjct: 116 MVMSGLSPYIAFERILKGSTIFKRTSELAQRFILLNR--ILGRDPLTAFDELAKRTPSSR 173
Query: 251 VRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLT--VPMIIFFLP 308
V+ I + + G + D L +E L+ + A LG L + MI+ +
Sbjct: 174 VKETLSGYIATVKAGGDVVDYLNKRSRLLFNEMLVGMKIIADRLGGLLEAYLAMILLTMI 233
Query: 309 VLILV 313
++
Sbjct: 234 SFTVL 238
>gi|21234167|ref|NP_639745.1| putative integral membrane protein [Streptomyces coelicolor A3(2)]
gi|13620653|emb|CAC36692.1| putative integral membrane protein [Streptomyces coelicolor A3(2)]
Length = 297
Score = 53.0 bits (126), Expect = 7e-05, Method: Composition-based stats.
Identities = 30/212 (14%), Positives = 72/212 (33%), Gaps = 19/212 (8%)
Query: 117 LVVRLVVPIIFLIL-GIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKR 175
L R + + L++ ++ +P+ + G + + + + P ++ +
Sbjct: 92 LGKRALFALYGLVIPLLLQAMLALAGAPFPYVVPAGLSLGLAALFWLWPGREVAKEAAEA 151
Query: 176 QSSIKRAWPDALDLLLICVESGISIDQAL---RRVAEDIGGQSVPLSEEMLLTIAELS-F 231
+ ++ A L+ + + + QAL RV E+ + M +
Sbjct: 152 RLIVRHAAASYLERVALARVANSGAAQALTDTARVGENF------IFNRMRQVFHQADLA 205
Query: 232 LPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKA 291
A + + + L + G ++ +L+ + R L + + KA
Sbjct: 206 GVTPWDALKQLGEELDIPELTRPADTLALAGD-GAAVYTTLQAQARQLRIALLSDQKAKA 264
Query: 292 ASLGPKLTVP-------MIIFFLPVLILVIIG 316
+ +P MI F + L + I+G
Sbjct: 265 NEASAAMILPVTFGVILMITFVMIPLTITILG 296
>gi|305664070|ref|YP_003860358.1| Type II secretion system F domain [Ignisphaera aggregans DSM 17230]
gi|304378639|gb|ADM28478.1| Type II secretion system F domain [Ignisphaera aggregans DSM 17230]
Length = 596
Score = 52.6 bits (125), Expect = 7e-05, Method: Composition-based stats.
Identities = 29/196 (14%), Positives = 65/196 (33%), Gaps = 3/196 (1%)
Query: 122 VVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKR 181
+ IF I+G + +F + L L + ++I + F ++ R++S++
Sbjct: 68 IFSAIFSIVGFVLVFLFIPLNIIQLILGLMIAVIIPIMVFVYRLTKPYIMISNRKNSVES 127
Query: 182 AWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSF-LPNRQVAFE 240
P + + G S+++ + RV++ + E + + + A +
Sbjct: 128 ELPFFMAYVSTMARGGYSLEKLIERVSQ--LKIFSGIRLEAQRIVTHMKMFGEDPITALD 185
Query: 241 NFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV 300
R+ + R G + L E R+ E L L V
Sbjct: 186 RVAMNHPSTRFRDVMLGYTTTLRSGGDVVHYLETRTREVFESRMNEIRALFGRLASYLEV 245
Query: 301 PMIIFFLPVLILVIIG 316
+ + + + I
Sbjct: 246 YTVFGVIMAIAVFIFF 261
>gi|257791503|ref|YP_003182109.1| type II secretion system protein [Eggerthella lenta DSM 2243]
gi|257475400|gb|ACV55720.1| type II secretion system protein [Eggerthella lenta DSM 2243]
Length = 306
Score = 52.6 bits (125), Expect = 7e-05, Method: Composition-based stats.
Identities = 28/203 (13%), Positives = 68/203 (33%), Gaps = 8/203 (3%)
Query: 121 LVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIK 180
+ P +FL+ +I L P V + G + +KR +
Sbjct: 73 AISPAMFLVGVVIAGALLGAFLHGPLGGFGLLVGVAGAAAAAW--ALLLTAAKKRSMQFE 130
Query: 181 RAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELS-FLPNRQVAF 239
AL ++ + G S + ++ VA+ + P+ E+ I ++S + AF
Sbjct: 131 TQLASALPMISENLRGGSSFEMSISAVAQFM---PEPIHSELQRVIEDVSNASISLPDAF 187
Query: 240 ENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLT 299
E R Q A++ G ++ + + ++ + ++++ + +
Sbjct: 188 ERLAIRIQSSEAHLLATAVMIQKEGGGNLASVVDTIAETIARRIELKNKVRSSTANARFS 247
Query: 300 VPMIIFFLPVLILVI--IGPAIL 320
+ ++ P +
Sbjct: 248 AVFVAAVPFAVLAFFTYGSPGYM 270
>gi|218290609|ref|ZP_03494711.1| hypothetical protein AaLAA1DRAFT_2297 [Alicyclobacillus
acidocaldarius LAA1]
gi|218239393|gb|EED06590.1| hypothetical protein AaLAA1DRAFT_2297 [Alicyclobacillus
acidocaldarius LAA1]
Length = 294
Score = 52.6 bits (125), Expect = 7e-05, Method: Composition-based stats.
Identities = 44/280 (15%), Positives = 97/280 (34%), Gaps = 22/280 (7%)
Query: 32 VIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKA 91
++ + KRM V + ++Q + S + R++ L + L
Sbjct: 8 LLFVWAGWPIVKRMDPVVGDTWYRVRRQYRLTEGKSTAERIKRLVYGYLEAVIPASWLAP 67
Query: 92 ILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVG 151
+ I+ AG R + ++ LV+ I + +
Sbjct: 68 F---DRILVLSGQAGKRRALDILLIQAGMLVIVIFLAV--------------WAKHTPTW 110
Query: 152 AVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDI 211
++L G++ P +Q R+ + + I +++AL ++A D
Sbjct: 111 FILLYGFLVMVIPWRRWYRRIQTRRRDAAWQVRQLKRRFVSLLRRRIPLEEALWQIARDA 170
Query: 212 GGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYG-TSIGD 270
Q + + E+ A + ++ + QA+ ++ S+ D
Sbjct: 171 AAQRTDFGRRFVARMQEVRV-RALGDALHDLAEEFRVPELTRFVQAIRHAEANSLGSLAD 229
Query: 271 SLRVLVSE--TRSERLMEAEKKAASLGPK-LTVPMIIFFL 307
L + + + + L+EAEK A L + ++V M ++ L
Sbjct: 230 ILETQIRDESAQLDELVEAEKNAMQLKLRMMSVVMFVYIL 269
>gi|314917528|gb|EFS81359.1| type II secretion system F domain protein [Propionibacterium acnes
HL050PA1]
Length = 300
Score = 52.6 bits (125), Expect = 8e-05, Method: Composition-based stats.
Identities = 36/212 (16%), Positives = 83/212 (39%), Gaps = 7/212 (3%)
Query: 111 YSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISN 170
+ L++ + V+ + +++ + + VG +++ VG+ P I +
Sbjct: 88 RTPGDLVIEKAVMAMGGMLVPALARAVAAACGDTLPVTPVGLAVVLAVVGWFIPDTRIRS 147
Query: 171 LVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELS 230
+ + +DL+ + + S +AL A+ L+ + E S
Sbjct: 148 RSKAVRQDAAEVVLVYVDLVTLARLANQSAPRALVEAAQ--MSDHPVLTR--IRMTLERS 203
Query: 231 FLPNRQ--VAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAE 288
L + + + + + + L D+ G S+ +LR V E R L + +
Sbjct: 204 RLEQQSPWAGLDGLSDELDLPELAELVEVLRLDDQ-GASLAGALRARVHEMRDAHLNQEK 262
Query: 289 KKAASLGPKLTVPMIIFFLPVLILVIIGPAIL 320
+A + LT+ M+I L + +++I P ++
Sbjct: 263 AEAQTASESLTIWMVIPVLVLGLVLITPPLLI 294
>gi|89897405|ref|YP_520892.1| hypothetical protein DSY4659 [Desulfitobacterium hafniense Y51]
gi|89336853|dbj|BAE86448.1| hypothetical protein [Desulfitobacterium hafniense Y51]
Length = 316
Score = 52.6 bits (125), Expect = 8e-05, Method: Composition-based stats.
Identities = 30/235 (12%), Positives = 80/235 (34%), Gaps = 22/235 (9%)
Query: 96 ENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVIL 155
+ N L+AAG + + I+ I L +I+
Sbjct: 98 SRMTNILKAAGISMTPEVYSAYAITKAGAILLGI----------LPCLVLLPLLSPVLII 147
Query: 156 IGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQS 215
+ + + +++++ I+ P + + +++ + +
Sbjct: 148 LAVLTYFKEIRKADEQLKEKREQIEGELPRFVSTIEQTLKASRDVLAMME---NYKKNAG 204
Query: 216 VPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVL 275
+ E+ + A++ + + A F R + + + LI R G ++L
Sbjct: 205 PAFARELDVLTADMRS-SSYEAALTRFEARLNSPMLSDVVRGLIGVLR-GDDSTVYFQML 262
Query: 276 VSETRSERLMEAEKKAASLGPKL---TVPMIIFFLPVLILVIIGPAILSIIDTMK 327
+ ++ L + A + PK+ + M++ FL + +I + I+ ++
Sbjct: 263 AHDFKALELQRLKSLAQKIPPKIRIFSFIMLMCFLLTYLAIIA----MEILSSLG 313
>gi|227872977|ref|ZP_03991276.1| Flp pilus assembly protein TadB family protein [Oribacterium sinus
F0268]
gi|227841193|gb|EEJ51524.1| Flp pilus assembly protein TadB family protein [Oribacterium sinus
F0268]
Length = 284
Score = 52.6 bits (125), Expect = 9e-05, Method: Composition-based stats.
Identities = 32/212 (15%), Positives = 77/212 (36%), Gaps = 8/212 (3%)
Query: 110 EYSLNILLVVRLVVPIIFLIL-GIIWIFGYDKLLEYPFQLRVGAVILIGYVG--FCAPSV 166
L + + + L+ G ++ + + + +L+G + F P
Sbjct: 33 REKLQAFAIALFIGGAVSLVFYGNQFLDATGRATKATMYGNIVIFLLVGSLCGFFFLPIR 92
Query: 167 WISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIG---GQSVPLSEEML 223
+KR + R + L+ L + + SG+++ +L +D+ G+ +++E
Sbjct: 93 A-GQCKEKRLKELARQFRGFLESLAVALASGMNMHDSLDSTYKDMVMEFGEDEKITKETA 151
Query: 224 LTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSER 283
I L + + R+ + N S R G +I + +R +
Sbjct: 152 EMILGLRNNLAIEDMMLSLGKRSANKDIENFAIIFNVSYRAGGNIKEIVRRTADIIGEKM 211
Query: 284 LMEAEKKAASLGPKLTVPMIIFFLPVLILVII 315
+ E + A K+ + +PV++ ++
Sbjct: 212 EISEEIQTAISSNKIQF-TAMMIIPVVLTGML 242
>gi|254478240|ref|ZP_05091621.1| Bacterial type II secretion system protein F domain
[Carboxydibrachium pacificum DSM 12653]
gi|214035836|gb|EEB76529.1| Bacterial type II secretion system protein F domain
[Carboxydibrachium pacificum DSM 12653]
Length = 301
Score = 52.6 bits (125), Expect = 9e-05, Method: Composition-based stats.
Identities = 40/304 (13%), Positives = 101/304 (33%), Gaps = 48/304 (15%)
Query: 14 LAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLR 73
+AV+ ++F ++ + S+ R + K+++ + L
Sbjct: 1 MAVSFLFGAAVFMVVVLLY--------------SIRENRRLKLKRRLERHLVTPQKNELS 46
Query: 74 TRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGII 133
D LR+F + L+ KL+ +G + + + + L L +I L L
Sbjct: 47 IVDLFGLRSFTEALD-----------KKLKKSGIKLD-AEEVFLWFVLFSVVIALFL--- 91
Query: 134 WIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLIC 193
F+ + + ++ + L ++R + + D + +L
Sbjct: 92 -----------SFKGFTLLGLSLPFMLYYLLDYVFEYLGRRRIRKTEEQFRDFVKMLGAY 140
Query: 194 VESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRN 253
++ S A + AE++ PL E + + + + A + + ++
Sbjct: 141 LKMVPSFAGAFIKAAEEVES---PLKEHTDRVVRKFELGEDLEEALKEL-KSVESTYIKA 196
Query: 254 ATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVP----MIIFFLPV 309
++I + R + + + M + ++ K + M+ F +
Sbjct: 197 WADSIIFAVRMKSDLSRVCERTAKKLYERIKMANRVASMTVQAKSLMVSLAGMMAFMIVS 256
Query: 310 LILV 313
+ V
Sbjct: 257 TMSV 260
>gi|227494921|ref|ZP_03925237.1| type II secretion system protein [Actinomyces coleocanis DSM 15436]
gi|226831373|gb|EEH63756.1| type II secretion system protein [Actinomyces coleocanis DSM 15436]
Length = 291
Score = 52.6 bits (125), Expect = 9e-05, Method: Composition-based stats.
Identities = 37/193 (19%), Positives = 70/193 (36%), Gaps = 17/193 (8%)
Query: 100 NKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYV 159
L AG + L+V +++P+ L+ +++ + V
Sbjct: 47 QLLFKAGLVG-NQQWLFLIVSILIPL--LVGSLVFTLTQVIPVAVAVATAVAP------- 96
Query: 160 GFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLS 219
P W+ +QKRQ AWPD +D LL V +G+S+ +A+ +++ +
Sbjct: 97 ---LPWGWLRARLQKRQQLFAGAWPDIVDSLLTAVRAGVSLPEAVVQLSHSGPEITRTY- 152
Query: 220 EEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTS-IGDSLRVLVSE 278
E VA + + + + + G S +G+ LR L +
Sbjct: 153 --FQHFAMEYRSSGKFDVALTSLQSNFADKNSKRVFEVIRLGREVGGSEMGNILRDLSAM 210
Query: 279 TRSERLMEAEKKA 291
R + E +A
Sbjct: 211 MRENLRISGEIQA 223
>gi|311105394|ref|YP_003978247.1| type II secretion system protein F domain-containing protein 1
[Achromobacter xylosoxidans A8]
gi|310760083|gb|ADP15532.1| bacterial type II secretion system protein F domain protein 1
[Achromobacter xylosoxidans A8]
Length = 281
Score = 52.2 bits (124), Expect = 9e-05, Method: Composition-based stats.
Identities = 20/79 (25%), Positives = 32/79 (40%), Gaps = 3/79 (3%)
Query: 204 LRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDR 263
LR V E G PL++E L + E A EN NR D A+ + +
Sbjct: 131 LRHVVEQSGA---PLAQEFGLMLREQRMGVPWDSALENLRNRMPADSTALVVAAMRIAAQ 187
Query: 264 YGTSIGDSLRVLVSETRSE 282
G ++ ++L + R+
Sbjct: 188 TGGNLAEALESIAQTLRAR 206
>gi|311107628|ref|YP_003980481.1| type II secretion system protein F domain-containing protein 4
[Achromobacter xylosoxidans A8]
gi|310762317|gb|ADP17766.1| bacterial type II secretion system protein F domain protein 4
[Achromobacter xylosoxidans A8]
Length = 307
Score = 52.2 bits (124), Expect = 1e-04, Method: Composition-based stats.
Identities = 38/210 (18%), Positives = 74/210 (35%), Gaps = 21/210 (10%)
Query: 100 NKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYV 159
LR AG R ++ L +R+ +P++ + W+ L P V ++L +
Sbjct: 71 RLLRLAGLRQ----SVGLYLRIALPVV-AGAALAWV------LLGPLSGAVTLLLLAVFA 119
Query: 160 GFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLS 219
F + KRQ + P LD ++ ++I ++ + +
Sbjct: 120 YFL-----LWLRADKRQRRMISQLPAFLDNIVRL----LTIGNSMGAAFQTAAAATDEPL 170
Query: 220 EEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSET 279
E++ T + LS A + + + + R+G L + +
Sbjct: 171 REVVETASSLSRSKELDAALAQVSRLYGLKELYMVAAVVSLAMRFGGRSDQVLERMAAFM 230
Query: 280 RSERLMEAEKKAASLGPKLTVPMIIFFLPV 309
R E A+S +L+ I+ LPV
Sbjct: 231 RDVAQARNELTASSAEVRLSA-WILALLPV 259
>gi|28493667|ref|NP_787828.1| hypothetical protein TWT700 [Tropheryma whipplei str. Twist]
gi|28572860|ref|NP_789640.1| integral membrane protein [Tropheryma whipplei TW08/27]
gi|28410993|emb|CAD67378.1| putative integral membrane protein [Tropheryma whipplei TW08/27]
gi|28476709|gb|AAO44797.1| unknown [Tropheryma whipplei str. Twist]
Length = 310
Score = 52.2 bits (124), Expect = 1e-04, Method: Composition-based stats.
Identities = 22/89 (24%), Positives = 39/89 (43%), Gaps = 2/89 (2%)
Query: 236 QVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLG 295
+ A +F + + Q + S G G LR + + EA+K+ L
Sbjct: 220 RDAMRHF--NLPIVNAKRIDQIISLSFSSGAPAGKLLRAESELAQLQARTEAQKQVQRLA 277
Query: 296 PKLTVPMIIFFLPVLILVIIGPAILSIID 324
KL +P+ + LP +L+ I P ++S+I
Sbjct: 278 VKLMLPLGLCILPAFMLIGIVPLVISMIS 306
>gi|225375136|ref|ZP_03752357.1| hypothetical protein ROSEINA2194_00760 [Roseburia inulinivorans DSM
16841]
gi|225213010|gb|EEG95364.1| hypothetical protein ROSEINA2194_00760 [Roseburia inulinivorans DSM
16841]
Length = 220
Score = 52.2 bits (124), Expect = 1e-04, Method: Composition-based stats.
Identities = 24/170 (14%), Positives = 62/170 (36%), Gaps = 10/170 (5%)
Query: 147 QLRVGAVILIGYVGFCAPSVWISNLVQKRQSS---IKRAWPDALDLLLICVESGISIDQA 203
+ +V + V P ++R+ + + DA+ + +++G S++ A
Sbjct: 29 WILYQSVYGMVTVFIFIPLCIQREKKKRREQQKETLLLQFRDAMQSVAAALQAGYSMENA 88
Query: 204 LRRVAEDIG---GQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQ 260
R +++ GQ E+ + + F R+ + ++N + +
Sbjct: 89 WRESEKEMTELYGQDGIFVGELHQINQAVGMNQPIEKLLYEFALRSDCEDIQNFSDVFLF 148
Query: 261 SDRYGTS----IGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFF 306
+ R G I ++ + + ER ++ A + K+ + +F
Sbjct: 149 AKRSGGDFHKIIATTIEHISDKIEVEREVQTVISAKKMEQKIMNVIPVFI 198
>gi|298253206|ref|ZP_06976998.1| Flp pilus assembly protein TadC [Gardnerella vaginalis 5-1]
gi|297532601|gb|EFH71487.1| Flp pilus assembly protein TadC [Gardnerella vaginalis 5-1]
Length = 215
Score = 52.2 bits (124), Expect = 1e-04, Method: Composition-based stats.
Identities = 38/158 (24%), Positives = 64/158 (40%), Gaps = 24/158 (15%)
Query: 187 LDLLLICVESGISIDQALRRVAEDIG-GQSVPLSEEMLLTIAELSFLPNRQVA------- 238
L ++++ + SG++I +AL V E GQ + L L A
Sbjct: 62 LHMIIVSLRSGVAITRALSAVGEVFPCGQGMWLCS----VSNALLAGDTWHEAWSSTYTK 117
Query: 239 -----FEN---FYNRTQMDC----VRNATQALIQSDRYGTSIGDSLRVLVSETRSERLME 286
EN F NR +D R +L +S YG+S L L
Sbjct: 118 QDNFELENKSKFTNRKNLDSSEILARWLMTSLKESWCYGSSPVPVLSALAQHYEINMANI 177
Query: 287 AEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIID 324
A ++++ L +L +P+ + FLP I + I P ++S++
Sbjct: 178 ARQESSKLSVRLLLPVGLCFLPSFICIGILPTVMSLMR 215
>gi|317500896|ref|ZP_07959107.1| hypothetical protein HMPREF1026_01050 [Lachnospiraceae bacterium
8_1_57FAA]
gi|316897694|gb|EFV19754.1| hypothetical protein HMPREF1026_01050 [Lachnospiraceae bacterium
8_1_57FAA]
Length = 205
Score = 52.2 bits (124), Expect = 1e-04, Method: Composition-based stats.
Identities = 24/165 (14%), Positives = 61/165 (36%), Gaps = 4/165 (2%)
Query: 168 ISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVP---LSEEMLL 224
+ +L +KR+ + + +A+ + +++G S++ A+R +D+ + +E
Sbjct: 13 LRDLCRKREKEFRVQFSNAIQAMGAALKAGYSVENAIREAEKDLAPMYEENVRIRKEFRK 72
Query: 225 TIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERL 284
+ +L E F R + + + + G +R V +
Sbjct: 73 MVHQLDMKMPAVSVMEQFSERMKQEDTEDFVTVFSSAKMSGGDSISIIRNAVKIISGKID 132
Query: 285 MEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMKDH 329
E E + KL I+ +P I++ + + + ++
Sbjct: 133 TEQEIQTMFASKKLEFE-IMCAVPFFIILYMKLTFGEFLSVLYEN 176
>gi|212717043|ref|ZP_03325171.1| hypothetical protein BIFCAT_01990 [Bifidobacterium catenulatum DSM
16992]
gi|212660031|gb|EEB20606.1| hypothetical protein BIFCAT_01990 [Bifidobacterium catenulatum DSM
16992]
Length = 175
Score = 52.2 bits (124), Expect = 1e-04, Method: Composition-based stats.
Identities = 31/142 (21%), Positives = 58/142 (40%), Gaps = 9/142 (6%)
Query: 183 WPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENF 242
P L++L + + G SI +AL V + G + +L+ + A+ +
Sbjct: 43 LPLILEMLSVAIRQGSSIPRALIAVGDIAAG---EFGAGLRSAGEQLNEGVSWDDAWPDD 99
Query: 243 YNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPM 302
+ + A S G S + L V + + + E+ AA L +L +P
Sbjct: 100 GDLAVVRD------AFASSWHSGASPVERLETAVEQLDWDERAQIEQAAAKLSVRLLLPT 153
Query: 303 IIFFLPVLILVIIGPAILSIID 324
+ FLP + V I P+++S +
Sbjct: 154 GLCFLPAFVAVGIIPSVMSFVQ 175
>gi|68537056|ref|YP_251761.1| hypothetical protein jk1961 [Corynebacterium jeikeium K411]
gi|68264655|emb|CAI38143.1| putative membrane protein [Corynebacterium jeikeium K411]
Length = 374
Score = 52.2 bits (124), Expect = 1e-04, Method: Composition-based stats.
Identities = 36/203 (17%), Positives = 62/203 (30%), Gaps = 21/203 (10%)
Query: 121 LVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIK 180
+V + + G +W + L VG P
Sbjct: 189 FLVGVGLVCAGTLWTEHLSESLTTSPLGGVGVRAGPAGSTLMGP---------------- 232
Query: 181 RAWPDALDLLLICVESGISIDQALRR-VAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAF 239
ALD+ + SG ++ A V + I E+ +A L+ Q A+
Sbjct: 233 LDAARALDVSAAALRSGKALLPAWDVGVGQLIQNGEHDGEGELGRAMALLNLGGG-QDAW 291
Query: 240 ENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLT 299
+ + Q R GTS+ D + R +A A + L
Sbjct: 292 LTLA---DHPLLGPIARQAAQQTRAGTSLADGMHQQAEHLRRVAADKATAGAEKVLIALA 348
Query: 300 VPMIIFFLPVLILVIIGPAILSI 322
P+ + FLP + V + P + +
Sbjct: 349 APLTLCFLPAFVFVGLIPLAIGM 371
>gi|328943878|ref|ZP_08241343.1| hypothetical protein HMPREF0091_10568 [Atopobium vaginae DSM 15829]
gi|327491847|gb|EGF23621.1| hypothetical protein HMPREF0091_10568 [Atopobium vaginae DSM 15829]
Length = 296
Score = 52.2 bits (124), Expect = 1e-04, Method: Composition-based stats.
Identities = 28/190 (14%), Positives = 67/190 (35%), Gaps = 17/190 (8%)
Query: 122 VVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKR 181
V +I ++ +I + + + P V L Q +++++
Sbjct: 70 AVTLILFVVMLISVLLFSRSFAAPLLCAACCVCACPMFA--------HRLEQLQKTTLCH 121
Query: 182 AWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFEN 241
PD +L + + +G + QA+ V + G++ + +L + +
Sbjct: 122 DMPDIFRMLGMALAAGQTFSQAIAYVGQHQPGEA---GKAFQKASLKLRCGSSISEVLND 178
Query: 242 FYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRS----ERLMEAEKKAASLGPK 297
+ Q V+ AL S R G + R ++L+ + A L +
Sbjct: 179 MAHTLQAPGVKFLITALFISQRTGAPLKSLFRQSAQLVEQQEKFKKLLSVKTAQARLSIR 238
Query: 298 L--TVPMIIF 305
+ ++P+++
Sbjct: 239 VVSSLPLVLI 248
>gi|260579400|ref|ZP_05847282.1| membrane protein [Corynebacterium jeikeium ATCC 43734]
gi|258602529|gb|EEW15824.1| membrane protein [Corynebacterium jeikeium ATCC 43734]
Length = 374
Score = 52.2 bits (124), Expect = 1e-04, Method: Composition-based stats.
Identities = 36/203 (17%), Positives = 62/203 (30%), Gaps = 21/203 (10%)
Query: 121 LVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIK 180
+V + + G +W + L VG P
Sbjct: 189 FLVGVGLVCAGTLWTEHLSESLTTSPLGGVGVRAGPAGSTLMGP---------------- 232
Query: 181 RAWPDALDLLLICVESGISIDQALRR-VAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAF 239
ALD+ + SG ++ A V + I E+ +A L+ Q A+
Sbjct: 233 LDAARALDVSAAALRSGKALLPAWDVGVGQLIQNGEHDGEGELGRAMALLNLGGG-QDAW 291
Query: 240 ENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLT 299
+ + Q R GTS+ D + R +A A + L
Sbjct: 292 LTLA---DHPLLGPIARQAAQQTRAGTSLADGMHQQAEHLRRVAADKATAGAEKVLIALA 348
Query: 300 VPMIIFFLPVLILVIIGPAILSI 322
P+ + FLP + V + P + +
Sbjct: 349 APLTLCFLPAFVFVGLIPLAIGM 371
>gi|21323067|dbj|BAB97696.1| Hypothetical protein [Corynebacterium glutamicum ATCC 13032]
Length = 182
Score = 52.2 bits (124), Expect = 1e-04, Method: Composition-based stats.
Identities = 29/136 (21%), Positives = 57/136 (41%), Gaps = 6/136 (4%)
Query: 187 LDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRT 246
++L C+++G++ A + VA L +A LS + AF
Sbjct: 46 IELFSACLDAGLNTRDAAQVVAHVAAITHREL---WTHVVALLSIGVSAPQAFALMAGVD 102
Query: 247 QMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFF 306
+D + N S R G+++ D R + + + + A G + +P+ + F
Sbjct: 103 GLDELANLATV---SHRSGSALSDGCRNISTSLLASAGDKRTAAAERAGVFIALPLALCF 159
Query: 307 LPVLILVIIGPAILSI 322
LP ++V + P +LS+
Sbjct: 160 LPAFMIVGLAPVVLSL 175
>gi|257793110|ref|YP_003186508.1| hypothetical protein Aaci_3123 [Alicyclobacillus acidocaldarius
subsp. acidocaldarius DSM 446]
gi|257479802|gb|ACV60119.1| hypothetical protein Aaci_3123 [Alicyclobacillus acidocaldarius
subsp. acidocaldarius DSM 446]
Length = 294
Score = 52.2 bits (124), Expect = 1e-04, Method: Composition-based stats.
Identities = 32/192 (16%), Positives = 73/192 (38%), Gaps = 7/192 (3%)
Query: 120 RLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSI 179
R + I+ + G++ I + L + ++L G++ P +Q R+
Sbjct: 81 RRALDILLIQAGMLAIVIF--LTVWAKHTPTWFILLYGFLVMVIPWRRWYRRIQARRRDA 138
Query: 180 KRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAF 239
+ + I +++AL ++A D Q + + E A
Sbjct: 139 AWQVRQLKRRFVSLLRRRIPLEEALWQIARDAAAQRTDFGRRFVARMQEARV-RPLGDAL 197
Query: 240 ENFYNRTQMDCVRNATQALIQSDRYG-TSIGDSLRVLVSE--TRSERLMEAEKKAASLGP 296
+ ++ + QA+ ++ S+ D L + + + + L++AEK A L
Sbjct: 198 HDLAEEFRVPELTRFVQAIRHAEANSLGSLADILETQIRDESAQLDELVDAEKNAMQLKL 257
Query: 297 K-LTVPMIIFFL 307
+ ++V M ++ L
Sbjct: 258 RMMSVVMFVYIL 269
>gi|145591089|ref|YP_001153091.1| type II secretion system protein [Pyrobaculum arsenaticum DSM
13514]
gi|145282857|gb|ABP50439.1| type II secretion system protein [Pyrobaculum arsenaticum DSM
13514]
Length = 261
Score = 52.2 bits (124), Expect = 1e-04, Method: Composition-based stats.
Identities = 35/203 (17%), Positives = 77/203 (37%), Gaps = 3/203 (1%)
Query: 115 ILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQK 174
R V +I + L G L + V + G + F A ++ +LV
Sbjct: 14 AFSYRRYVTAVIAVPLAAGASAGVVGWLLFGLAGGVALGAIGGLLSFAALLLYPVHLVSA 73
Query: 175 RQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAEL-SFLP 233
R+S + L +LL + +G+ + +A+ R+AE ++ E+ L E+
Sbjct: 74 RRSHFENNLVYTLGVLLPLLAAGVPLGRAVTRLAE--VEDDRYIARELALAAREMIVMGS 131
Query: 234 NRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAAS 293
+ + A + R R + L +S + + L + + ++A+ S
Sbjct: 132 SPEEALSHSAERVPSVTYRETVEMLTRSAKLTQRVDAVLLARLDWLLRAKQIKAQSLVRS 191
Query: 294 LGPKLTVPMIIFFLPVLILVIIG 316
+ + +++ L ++ I+
Sbjct: 192 MSLMFEIFVVVTILLPTLVYIVA 214
>gi|226363662|ref|YP_002781444.1| hypothetical protein ROP_42520 [Rhodococcus opacus B4]
gi|226242151|dbj|BAH52499.1| hypothetical membrane protein [Rhodococcus opacus B4]
Length = 194
Score = 51.8 bits (123), Expect = 1e-04, Method: Composition-based stats.
Identities = 31/137 (22%), Positives = 58/137 (42%), Gaps = 6/137 (4%)
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
A DLL C+ +G+ + A + VA PLSE + L+ + A +
Sbjct: 54 AFDLLAACLRAGLPVATAAQAVA---RSAPAPLSESLRRAADLLALGADAATA---WEAA 107
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
+ + +S G+S+ S+ L ++ R++ A A G ++ P+ +
Sbjct: 108 ASDPATESLARMARRSAASGSSLAGSMTELAADARTQVEHLASASAERAGVLISGPLGLC 167
Query: 306 FLPVLILVIIGPAILSI 322
FLP I + I P ++ +
Sbjct: 168 FLPAFICLGIIPVVVGL 184
>gi|256833436|ref|YP_003162163.1| type II secretion system protein [Jonesia denitrificans DSM 20603]
gi|256686967|gb|ACV09860.1| type II secretion system protein [Jonesia denitrificans DSM 20603]
Length = 416
Score = 51.8 bits (123), Expect = 1e-04, Method: Composition-based stats.
Identities = 34/137 (24%), Positives = 59/137 (43%), Gaps = 10/137 (7%)
Query: 187 LDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRT 246
LDLL + +G SID AL VA + V ++ + L + Q A+ N R
Sbjct: 281 LDLLTTVMSAGHSIDSALDTVATHVPDLEVA---QLGVVARLLLLGASWQRAWANAPARY 337
Query: 247 QMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLME-AEKKAASLGPKLTVPMIIF 305
+AL + G+S+ +L + + A ++A L + VP+ +
Sbjct: 338 A-----FLGEALADGWQRGSSVIPTLIA-TRDAWIAQEQADAHQRAQRLSSMIVVPVGVC 391
Query: 306 FLPVLILVIIGPAILSI 322
+LP +LV + P +S+
Sbjct: 392 YLPAFVLVGVVPTAVSL 408
>gi|145596964|ref|YP_001161261.1| type II secretion system protein [Salinispora tropica CNB-440]
gi|145306301|gb|ABP56883.1| type II secretion system protein [Salinispora tropica CNB-440]
Length = 288
Score = 51.8 bits (123), Expect = 1e-04, Method: Composition-based stats.
Identities = 30/198 (15%), Positives = 67/198 (33%), Gaps = 3/198 (1%)
Query: 125 IIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWP 184
I ++ + + P + V + + V + + +S + A
Sbjct: 94 IGLASPTLLSVTFAVTGVGLPVAVPVLGSLGLALVCAWLAHRAVLTKAEAARSEFRAAVC 153
Query: 185 DALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYN 244
LDL+ + + + Q+L R AE G E L +A+L +
Sbjct: 154 TYLDLVALQLSAAHGPVQSLERAAEVCDGWVFDRIRE-SLRLAQLQMHSPWDE-LRELAD 211
Query: 245 RTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMII 304
+ + + + + S G + ++LR R + + +A + +L +P +
Sbjct: 212 QIGIPELGDVGAIMRSSGSEGAQVHETLRSRADSLRDQIRTDNLARAEGVTGRLDIPGAL 271
Query: 305 FFLPVLILVIIGPAILSI 322
VL+ P + +
Sbjct: 272 LVF-VLLGFATYPFLARL 288
>gi|327454295|gb|EGF00950.1| type II secretion system F domain protein [Propionibacterium acnes
HL087PA3]
gi|328756054|gb|EGF69670.1| type II secretion system F domain protein [Propionibacterium acnes
HL087PA1]
Length = 300
Score = 51.8 bits (123), Expect = 1e-04, Method: Composition-based stats.
Identities = 36/212 (16%), Positives = 83/212 (39%), Gaps = 7/212 (3%)
Query: 111 YSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISN 170
+ L++ + V+ + +++ + + VG +++ VG+ P I +
Sbjct: 88 RTPGDLVIEKAVMAMGGMLVPALARALAAACGDTLPVTPVGLAVVLAVVGWFIPDTRIRS 147
Query: 171 LVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELS 230
+ + +DL+ + + S +AL A+ L+ + E S
Sbjct: 148 RSKAVRQDAAEVVLVYVDLVTLARLANQSAPRALVEAAQ--MSDHPVLTR--IRMTLERS 203
Query: 231 FLPNRQ--VAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAE 288
L + + + + + + L D+ G S+ +LR V E R L + +
Sbjct: 204 RLEQQSPWAGLDGLSDELDLPELAELVEVLRLDDQ-GASLAGALRARVHEMRDAHLNQEK 262
Query: 289 KKAASLGPKLTVPMIIFFLPVLILVIIGPAIL 320
+A + LT+ M+I L + +++I P ++
Sbjct: 263 AEAQTASESLTIWMVIPVLVLGLVLITPPLLI 294
>gi|313764977|gb|EFS36341.1| type II secretion system F domain protein [Propionibacterium acnes
HL013PA1]
gi|313815463|gb|EFS53177.1| type II secretion system F domain protein [Propionibacterium acnes
HL059PA1]
gi|313829027|gb|EFS66741.1| type II secretion system F domain protein [Propionibacterium acnes
HL063PA2]
gi|314916258|gb|EFS80089.1| type II secretion system F domain protein [Propionibacterium acnes
HL005PA4]
gi|314921862|gb|EFS85693.1| type II secretion system F domain protein [Propionibacterium acnes
HL050PA3]
gi|314930874|gb|EFS94705.1| type II secretion system F domain protein [Propionibacterium acnes
HL067PA1]
gi|314955331|gb|EFS99736.1| type II secretion system F domain protein [Propionibacterium acnes
HL027PA1]
gi|314959203|gb|EFT03305.1| type II secretion system F domain protein [Propionibacterium acnes
HL002PA1]
gi|314969036|gb|EFT13134.1| type II secretion system F domain protein [Propionibacterium acnes
HL037PA1]
gi|315099723|gb|EFT71699.1| type II secretion system F domain protein [Propionibacterium acnes
HL059PA2]
gi|315102364|gb|EFT74340.1| type II secretion system F domain protein [Propionibacterium acnes
HL046PA1]
gi|315109819|gb|EFT81795.1| type II secretion system F domain protein [Propionibacterium acnes
HL030PA2]
gi|327334604|gb|EGE76315.1| membrane associated protein [Propionibacterium acnes HL097PA1]
gi|327456360|gb|EGF03015.1| type II secretion system F domain protein [Propionibacterium acnes
HL083PA2]
gi|328758899|gb|EGF72515.1| type II secretion system F domain protein [Propionibacterium acnes
HL025PA2]
Length = 300
Score = 51.8 bits (123), Expect = 1e-04, Method: Composition-based stats.
Identities = 36/212 (16%), Positives = 83/212 (39%), Gaps = 7/212 (3%)
Query: 111 YSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISN 170
+ L++ + V+ + +++ + + VG +++ VG+ P I +
Sbjct: 88 RTPGDLVIEKAVMAMGGMLVPALARAVAAACGDTLPVTPVGLAVVLAVVGWFIPDTRIRS 147
Query: 171 LVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELS 230
+ + +DL+ + + S +AL A+ L+ + E S
Sbjct: 148 RSKAVRQDAAEVVLVYVDLVTLARLANQSAPRALVEAAQ--MSDHPVLTR--IRMTLERS 203
Query: 231 FLPNRQ--VAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAE 288
L + + + + + + L D+ G S+ +LR V E R L + +
Sbjct: 204 RLEQQSPWAGLDGLSDELDLPELAELVEVLRLDDQ-GASLAGALRARVHEMRDAHLNQEK 262
Query: 289 KKAASLGPKLTVPMIIFFLPVLILVIIGPAIL 320
+A + LT+ M+I L + +++I P ++
Sbjct: 263 AEAQTASESLTIWMVIPVLVLGLVLITPPLLI 294
>gi|314964234|gb|EFT08334.1| type II secretion system F domain protein [Propionibacterium acnes
HL082PA1]
Length = 196
Score = 51.8 bits (123), Expect = 1e-04, Method: Composition-based stats.
Identities = 31/162 (19%), Positives = 64/162 (39%), Gaps = 7/162 (4%)
Query: 161 FCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSE 220
+ P I + + + A +DL+ + + S +AL A+ L+
Sbjct: 34 WFIPDTRIRSRSKAVRQDAAEAVLVYVDLVTLARLANQSAPRALVEAAQ--MSDHPVLAR 91
Query: 221 EMLLTIAELSFLPNRQ--VAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSE 278
+ E S L + + + + + + L D+ G S+ +LR V E
Sbjct: 92 --IRMTLERSRLEQQSPWAGLDGLSDELDLPELAELVEVLRLDDQ-GASLAGALRARVHE 148
Query: 279 TRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAIL 320
R L + + +A + LT+ M+I L + +++I P ++
Sbjct: 149 MRDAHLNQEKVEAQTASESLTIWMVIPVLVLGLVLITPPLLI 190
>gi|323359116|ref|YP_004225512.1| Flp pilus assembly protein TadB [Microbacterium testaceum StLB037]
gi|323275487|dbj|BAJ75632.1| Flp pilus assembly protein TadB [Microbacterium testaceum StLB037]
Length = 300
Score = 51.8 bits (123), Expect = 1e-04, Method: Composition-based stats.
Identities = 22/97 (22%), Positives = 39/97 (40%)
Query: 229 LSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAE 288
+ + A D +R A L S R G G+ LR R E
Sbjct: 199 IERARSLIAAERRGGALADDDDLRRAEATLDLSLRAGVPAGELLRGDAWLARRAARTEGR 258
Query: 289 KKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDT 325
+ AA L +L +P+ + LP +L+ + P ++ ++ +
Sbjct: 259 EAAARLSTRLLLPLGVCTLPAFLLLAVAPLLIGVLRS 295
>gi|159042209|ref|YP_001541461.1| type II secretion system protein [Caldivirga maquilingensis IC-167]
gi|157921044|gb|ABW02471.1| type II secretion system protein [Caldivirga maquilingensis IC-167]
Length = 590
Score = 51.8 bits (123), Expect = 1e-04, Method: Composition-based stats.
Identities = 39/212 (18%), Positives = 80/212 (37%), Gaps = 12/212 (5%)
Query: 113 LNILLVVRLVVPIIFLILGIIWIFGYDKLLEY-----PFQLRVGAVILIGYVGFCAPSVW 167
+ + V + + + L I + + L Y P L + + + P+
Sbjct: 307 VRPYIAVGVSSMVAMVALLIGYNTVFHGDLGYSINVGPVSLDFATYMAVVLIIAYVPAAL 366
Query: 168 ISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIA 227
+ V + S++RA+ D L +SG + ++ + +A+ LS +
Sbjct: 367 YAERVIAERRSLERAFSDFLRDFTELRKSGFTPEKIISTLAD--TRDYGALSRYLKDISK 424
Query: 228 ELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVS----ETRSER 283
++ + +V F NRT+ R L++S YG + ++L L S R
Sbjct: 425 QIRYGIPIRVVLSEFMNRTRSYYARVFAWLLLESIEYGGATPETLESLASFSSLMIRIND 484
Query: 284 LMEAEKKAASLGPKLTVPMIIFFLPVLILVII 315
+ A K P + MI+ V+++ +
Sbjct: 485 DLLARLKPLRFVPYI-GAMILTLTLVIMVFTV 515
Score = 47.2 bits (111), Expect = 0.004, Method: Composition-based stats.
Identities = 34/215 (15%), Positives = 77/215 (35%), Gaps = 14/215 (6%)
Query: 96 ENIVNKLRAAGFRS--EYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRV--G 151
E + L+ A E + + ++ ++ + +G+ + + + F L V
Sbjct: 24 EQLERVLKNAKVYMLPERFMARVFFATIITAVLSVPIGLYLTYNSIESIMGSFNLTVKSI 83
Query: 152 AVILIGYVGFCAPSVWI-------SNLVQKRQSSIKRAWPDALDLLLICVESGISIDQAL 204
V+ IG V P + + Q + P L + +SG+S+ A+
Sbjct: 84 TVLSIGLVMIVLPFIVYVMMMTLPKMQLSDLQYKVDSELPFFAAYLAMISQSGLSVTSAI 143
Query: 205 RRVAE-DIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDR 263
R+A + ++ E+++ + + A T +N + + R
Sbjct: 144 ERLANIRLLEAIGKIAREIVVKNK--AIGMDPLTALTESALSTPSHLFQNLIMGYVTNVR 201
Query: 264 YGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKL 298
G I L + ++E ++ L + + A L +
Sbjct: 202 TGGDILHYLEIRLNEIVNDTLDKIRRGAEFLSTLM 236
>gi|148508014|gb|ABQ75813.1| transmembrane protein [uncultured haloarchaeon]
Length = 674
Score = 51.8 bits (123), Expect = 1e-04, Method: Composition-based stats.
Identities = 28/216 (12%), Positives = 85/216 (39%), Gaps = 7/216 (3%)
Query: 110 EYSLNILLVV--RLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVW 167
E + + + ++FL I + +++P + + + + P V
Sbjct: 390 ERPVYTFIFTIPAAIAAVVFLQENTIAELTHSGFIQHPEVNSLYLLYIPSLIA-MIPFVI 448
Query: 168 ISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIA 227
+ L Q+ + + R P+A G+ + + VA++ LS ++ + I
Sbjct: 449 LYELQQRNKKVVLRRIPEAFSTAAESNSQGLMLSDSFDVVAKNSTDY---LSSKLQVAIN 505
Query: 228 ELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEA 287
E + + + A F N ++ + + + ++++ I +++ + + ++A
Sbjct: 506 ESRWTNSFERALIRFANELEVSRLSRTIKLITKANKLTGDIQGVVKIAAKDVKLMAELDA 565
Query: 288 EKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSII 323
++ ++ V + + + V I+V + + ++
Sbjct: 566 -ERVEQSYMQIIVIFVSYLISVCIIVSLNITFIQML 600
Score = 39.9 bits (92), Expect = 0.53, Method: Composition-based stats.
Identities = 42/256 (16%), Positives = 91/256 (35%), Gaps = 22/256 (8%)
Query: 76 DSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWI 135
+ S +F +KLN I + ++ L F S +SL + +V ++VP+I +
Sbjct: 44 NKDSYSDFQRKLNQARIPLSHDVY--LSRVLFYSIFSLIVGTLVSIIVPLIIQNYAVYLF 101
Query: 136 FGYDKLLEYPFQLRVGAVILIG---------------YVGFCAPSVWISNLVQKRQSSIK 180
G + + + V+++G +VGF ++I +R+ I
Sbjct: 102 EGIPGMETVSTAVSIKPVVVVGLISFLIFGLGGFITTFVGFILSPMYI---ANERKRKIN 158
Query: 181 RAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLP-NRQVAF 239
P A + ++I + VA + +S E + + + + A
Sbjct: 159 INLPFATTFMYAMSRGSVTIIDVIEAVA-EAEDTYGQVSVEFQSIANSIHYSTNDLRSAI 217
Query: 240 ENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLT 299
+N T + + L+ G+ + E E ++ L
Sbjct: 218 KNEIEITPSAKLSELLEDLLNIIDTGSDMDTFFLHRSETYIEESKEEQKQILDQLEVLSE 277
Query: 300 VPMIIFFLPVLILVII 315
V +++F + +++I
Sbjct: 278 VYIVLFVASPIFVLVI 293
>gi|145294434|ref|YP_001137255.1| hypothetical protein cgR_0389 [Corynebacterium glutamicum R]
gi|140844354|dbj|BAF53353.1| hypothetical protein [Corynebacterium glutamicum R]
Length = 191
Score = 51.8 bits (123), Expect = 2e-04, Method: Composition-based stats.
Identities = 29/136 (21%), Positives = 57/136 (41%), Gaps = 6/136 (4%)
Query: 187 LDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRT 246
++L C+++G++ A + VA L +A LS + AF
Sbjct: 55 IELFSACLDAGLNTRDAAQVVAHVAAKTHREL---WTHVVALLSIGVSAPQAFALMAGVD 111
Query: 247 QMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFF 306
+D + N S R G+++ D R + + + + A G + +P+ + F
Sbjct: 112 GLDELANLATV---SHRSGSALSDGCRNISTSLLASAGDKRTAAAERAGVFIAMPLALCF 168
Query: 307 LPVLILVIIGPAILSI 322
LP ++V + P +LS+
Sbjct: 169 LPAFMIVGLAPVVLSL 184
>gi|297627359|ref|YP_003689122.1| hypothetical protein PFREUD_22080 [Propionibacterium freudenreichii
subsp. shermanii CIRM-BIA1]
gi|296923124|emb|CBL57711.1| Hypothetical membrane protein [Propionibacterium freudenreichii
subsp. shermanii CIRM-BIA1]
Length = 301
Score = 51.8 bits (123), Expect = 2e-04, Method: Composition-based stats.
Identities = 35/214 (16%), Positives = 82/214 (38%), Gaps = 17/214 (7%)
Query: 109 SEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWI 168
S+ S+ + ++V+ + L L I + + + +G +G+C P + +
Sbjct: 88 SDRSIGDFMAEKIVLCLAGLALPTIVTAVSAAMGSPLRAPTLLVALALGALGWCWPDLSL 147
Query: 169 SNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAE 228
++ + A DL+++ + S QAL A V + + +A+
Sbjct: 148 RAGSKRTRFEADEALLTLFDLVMLERMANRSATQALSAAAS---VSDVAIFRRVRGVLAQ 204
Query: 229 LSFLPNRQ---VAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSER-- 283
++ + ++ + + + Q D G S+ ++L V E R
Sbjct: 205 --AGLEQRPPWDGLRRLAHDLRLPPLEDLADIM-QLDEQGASLTEALAARVEELRDAHLS 261
Query: 284 --LMEAEKKAASLGPKLTVPMII----FFLPVLI 311
MEA++ + + + +P+++ F P L+
Sbjct: 262 AGRMEAQEVSERMTLWMALPVMVFGLSFIAPPLM 295
>gi|293606487|ref|ZP_06688845.1| type II secretion system protein [Achromobacter piechaudii ATCC
43553]
gi|292815110|gb|EFF74233.1| type II secretion system protein [Achromobacter piechaudii ATCC
43553]
Length = 307
Score = 51.8 bits (123), Expect = 2e-04, Method: Composition-based stats.
Identities = 38/245 (15%), Positives = 75/245 (30%), Gaps = 8/245 (3%)
Query: 65 KDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVP 124
+ + S + R S L N +K+ + +GF S L +L V +
Sbjct: 23 RHANSGQRRAASSAFLDNQLKRGRETPEEAPFAEGGRAMRSGFSSWDRLLLLAGVHQSMG 82
Query: 125 IIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWP 184
+ L V + +++ + + + KR+ + P
Sbjct: 83 FYLRTAVPVIAGAVLAWLFLGPLSGVVSFLMLAVLMYFL----LWLRADKRRRRMIGQLP 138
Query: 185 DALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYN 244
LD ++ + G S+ A + PL E + + A
Sbjct: 139 AFLDNIVRLITIGNSMGAAFQTA---AATTDEPLREVVETAASLSRSAKELDAALVQVSR 195
Query: 245 RTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMII 304
+ + + + R+G L + + R E A+S +L+ I+
Sbjct: 196 MYGLKELYMVAAVVSLAMRFGGRSDQVLERMAAFMRDVAQARNELTASSAEVRLSA-WIL 254
Query: 305 FFLPV 309
LPV
Sbjct: 255 ALLPV 259
>gi|124027109|ref|YP_001012429.1| hypothetical protein Hbut_0212 [Hyperthermus butylicus DSM 5456]
gi|123977803|gb|ABM80084.1| hypothetical protein Hbut_0212 [Hyperthermus butylicus DSM 5456]
Length = 283
Score = 51.8 bits (123), Expect = 2e-04, Method: Composition-based stats.
Identities = 28/207 (13%), Positives = 68/207 (32%)
Query: 110 EYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWIS 169
E + + L + V + IL + ++ G ++ V
Sbjct: 32 ERYVVLFLAATVAVVFLAGILPAVMLYIQGFPAIIAAVFGAGGALIAFIVMLAIYIALPM 91
Query: 170 NLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAEL 229
+ R ++ + L + +G + + R+ + + S E+ ++ +
Sbjct: 92 LAARNRGQKLEARFLLFAQALATRLLAGAGLIETFERMYREDLRELKEFSIELEYIVSGI 151
Query: 230 SFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEK 289
E T + + L + R G+ + + + +SE S + E ++
Sbjct: 152 RAGIPVDRVLEEASKLTPSPSLHSLLAGLSAAARTGSGLREVVDAAISEYLSTQETEIDR 211
Query: 290 KAASLGPKLTVPMIIFFLPVLILVIIG 316
SLG L M + + + ++G
Sbjct: 212 LTNSLGALLEFYMAAAVMLPVSIGVVG 238
>gi|92113784|ref|YP_573712.1| type II secretion system protein [Chromohalobacter salexigens DSM
3043]
gi|91796874|gb|ABE59013.1| type II secretion system protein [Chromohalobacter salexigens DSM
3043]
Length = 291
Score = 51.8 bits (123), Expect = 2e-04, Method: Composition-based stats.
Identities = 37/203 (18%), Positives = 79/203 (38%), Gaps = 13/203 (6%)
Query: 125 IIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWP 184
+I + +G+ + +++ + + V A L+G ++ + ++ +S ++ P
Sbjct: 69 VISVAIGLGILAVLLVVIDQRWSVFVLAGALLGG------NLILGWRARRLRSRLRAQLP 122
Query: 185 DALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYN 244
L+ L + G S ++A +R I + PL +
Sbjct: 123 GYLEQFLRELAVGASPERAFQR---QIARSAPPLRNMLERVWVRRELGLELHEGLVRESQ 179
Query: 245 RTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMII 304
++ + AL + R+G S+ D L V+ R + E KA + + T ++
Sbjct: 180 LLKLSELALLATALEVNQRHGGSLRDILGSFVTLLRQQERGRRELKALTGETRFTAVVLA 239
Query: 305 FFLPVLI---LVIIGPAILSIID 324
PVLI +++ P LS +
Sbjct: 240 VI-PVLIGGYILLTNPEFLSTMW 261
>gi|226309726|ref|YP_002769620.1| hypothetical protein BBR47_01390 [Brevibacillus brevis NBRC 100599]
gi|226092674|dbj|BAH41116.1| hypothetical membrane protein [Brevibacillus brevis NBRC 100599]
Length = 298
Score = 51.4 bits (122), Expect = 2e-04, Method: Composition-based stats.
Identities = 39/247 (15%), Positives = 84/247 (34%), Gaps = 16/247 (6%)
Query: 69 SSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFL 128
++L R+ V+ L + + +L A RS + +N + + ++ I
Sbjct: 21 PNKLYMREPTGKHEIVEVLQQDRKTIWKKFEERL--AKSRSGWGVNQYVTLSFLLGIA-- 76
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
FG + + + + A++ G +S +R+ + A+
Sbjct: 77 ------SFGVSSQILQSWWMALPALL----AGILFTERLVSVWGARRKEDFEAGNVKAIR 126
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
L+ + + S A +VA + L EE + L + F+ RT
Sbjct: 127 LMASSLRTSPSYLHAFEQVATSPFLSEIVL-EEYRRIVELLRAQVPLEHVMNRFFERTGS 185
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP 308
V+ + G + +L + S R +KAA V + + +P
Sbjct: 186 ADVKYLATIVHIQREMGGDMAKTLDLAASSILRRRQSLRRQKAAMAQIVAQVNL-LSVMP 244
Query: 309 VLILVII 315
+ ++ +
Sbjct: 245 FVFVIAL 251
>gi|304405119|ref|ZP_07386779.1| conserved hypothetical protein [Paenibacillus curdlanolyticus YK9]
gi|304345998|gb|EFM11832.1| conserved hypothetical protein [Paenibacillus curdlanolyticus YK9]
Length = 311
Score = 51.4 bits (122), Expect = 2e-04, Method: Composition-based stats.
Identities = 44/196 (22%), Positives = 73/196 (37%), Gaps = 9/196 (4%)
Query: 122 VVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKR 181
+VP F++L I+ FQ G ++L G P V + +RQ +
Sbjct: 75 LVPTSFMLLSILLAAAGMLAGALLFQSMKGTLMLGAVAG-LTPYVVFRTALLQRQLQTRI 133
Query: 182 AWPDALDLLLIC-VESGI-SIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAF 239
+ A++L C + +G I AL+R E+ P+ LS + + +
Sbjct: 134 DFLPAVELFYQCYLVTGERQIRHALQRTVEE-RRLPAPMQAVFEQLYRNLSVKGDDEASL 192
Query: 240 ENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLT 299
F L + G I DSLR L+++ R R +++ KL
Sbjct: 193 RVFAAALGHVWGNYFANILRVALSEGNPISDSLRELLTDMRRARRANEQER-----SKLL 247
Query: 300 VPMIIFFLPVLILVII 315
I F P+L L +
Sbjct: 248 EIRIANFTPILFLFLF 263
>gi|307327613|ref|ZP_07606798.1| Type II secretion system F domain protein [Streptomyces
violaceusniger Tu 4113]
gi|306886725|gb|EFN17726.1| Type II secretion system F domain protein [Streptomyces
violaceusniger Tu 4113]
Length = 297
Score = 51.4 bits (122), Expect = 2e-04, Method: Composition-based stats.
Identities = 28/174 (16%), Positives = 66/174 (37%), Gaps = 3/174 (1%)
Query: 142 LEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISID 201
PF L + +G + + AP + + ++ A L+ + + +
Sbjct: 118 TPLPFTLPAVCSLALGVLFWLAPGRDVKRAAAAARLIVRHAAASYLERVALARIANSGAA 177
Query: 202 QALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQS 261
QAL + A ++G + + + AELS A + + + L +
Sbjct: 178 QALTQTA-EVGDGWIFARMRQVFSQAELS-GVTPWDALKQLGEELDIPELTRPADTLALA 235
Query: 262 DRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVII 315
G ++ +L+ + R L +++ +A + + +P+ + +L V+I
Sbjct: 236 GD-GAAVYATLQAQARQLRIALLSDSKAEANAASASMVLPVTFGVILMLTFVMI 288
>gi|258510585|ref|YP_003184019.1| hypothetical protein Aaci_0582 [Alicyclobacillus acidocaldarius
subsp. acidocaldarius DSM 446]
gi|257477311|gb|ACV57630.1| hypothetical protein Aaci_0582 [Alicyclobacillus acidocaldarius
subsp. acidocaldarius DSM 446]
Length = 294
Score = 51.4 bits (122), Expect = 2e-04, Method: Composition-based stats.
Identities = 32/192 (16%), Positives = 74/192 (38%), Gaps = 7/192 (3%)
Query: 120 RLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSI 179
R + ++ + G++ I + L + ++L G++ P +Q R+
Sbjct: 81 RRALDVLLIQAGMLAIVIF--LAVWAKHTPTWFILLYGFLVMVIPWRRWYRRIQARRRDA 138
Query: 180 KRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAF 239
+ + I +++AL ++A+D Q + + E A
Sbjct: 139 AWQVRQLKRRFVSLLRRRIPLEEALWQIAKDAAAQRTDFGRRFVARMQEARV-RALGDAL 197
Query: 240 ENFYNRTQMDCVRNATQALIQSDRYG-TSIGDSLRVLVSE--TRSERLMEAEKKAASLGP 296
+ ++ + QA+ ++ S+ D L + + + + L+EAEK A L
Sbjct: 198 HDLAEEFRVPELTRFVQAIRHAEANSLGSLADILETQIRDESAQLDELVEAEKNAMQLKL 257
Query: 297 K-LTVPMIIFFL 307
+ ++V M ++ L
Sbjct: 258 RMMSVVMFVYIL 269
>gi|295395524|ref|ZP_06805718.1| conserved hypothetical protein [Brevibacterium mcbrellneri ATCC
49030]
gi|294971543|gb|EFG47424.1| conserved hypothetical protein [Brevibacterium mcbrellneri ATCC
49030]
Length = 217
Score = 51.4 bits (122), Expect = 2e-04, Method: Composition-based stats.
Identities = 33/151 (21%), Positives = 59/151 (39%), Gaps = 8/151 (5%)
Query: 177 SSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQ 236
S LDL+ IC+ +G+ I +A A +S + L+ +
Sbjct: 70 ESQVEQLAFDLDLVAICLRAGLPIPRAFELAARATQDRSG-----LGRLGRSLALG-SVD 123
Query: 237 VAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGP 296
AF + + R + S G ++ L L S+ R + AA LG
Sbjct: 124 NAFAGVQD--PVGEHRTVVSLVEFSRSTGVALAPLLSGLASDMRRAERRRRQMAAAKLGV 181
Query: 297 KLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
L +P+ + LP +IL + P +++++ M
Sbjct: 182 HLVIPLGVCVLPSVILTGVVPVVITLVGDMS 212
>gi|282165240|ref|YP_003357625.1| hypothetical protein MCP_2570 [Methanocella paludicola SANAE]
gi|282157554|dbj|BAI62642.1| conserved hypothetical protein [Methanocella paludicola SANAE]
Length = 296
Score = 51.4 bits (122), Expect = 2e-04, Method: Composition-based stats.
Identities = 37/195 (18%), Positives = 79/195 (40%), Gaps = 12/195 (6%)
Query: 122 VVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKR 181
V +I G++ F L P + G + P + V + ++
Sbjct: 25 AVAAASVIAGLVAAFVVFVLTSSPD-----IALFAGVMAPLLPIAFAFRAVAVYDAEVEA 79
Query: 182 AWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAEL-SFLPNRQVAFE 240
P+ L V++ SI +AL+RV+ G +S+E+ ++E+ + A
Sbjct: 80 KAPELFYDLSEQVKASGSIVKALKRVSRHEYGT---ISDEVCRMLSEIEEEGYDIASALR 136
Query: 241 NFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV 300
RT+ V + +I++ +++ L+ + SE R + ++ E++A +V
Sbjct: 137 AMALRTKNRYVDRSVSVIIEALTTSSNLESILKAVASEGRLAQSLKKERQAGISS---SV 193
Query: 301 PMIIFFLPVLILVII 315
+I F + + V +
Sbjct: 194 FVIYFTAIIFLAVTM 208
>gi|157283961|ref|YP_001468229.1| type II secretion system protein [Kineococcus radiotolerans
SRS30216]
gi|151363103|gb|ABS06105.1| type II secretion system protein [Kineococcus radiotolerans
SRS30216]
Length = 305
Score = 51.4 bits (122), Expect = 2e-04, Method: Composition-based stats.
Identities = 36/216 (16%), Positives = 79/216 (36%), Gaps = 5/216 (2%)
Query: 113 LNILLVVRLVVPIIFLILG--IIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISN 170
R+ + +L + +I P + + +L+ V + P+ + +
Sbjct: 93 AAAFTATRVAMVAAGFLLAPVLCFIALAVTGGSTPAVVVLTVTLLVTLVAYVVPARRVHS 152
Query: 171 LVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELS 230
+ R++ + A +DL+ + SG +AL A IG + L A +S
Sbjct: 153 TAESRRADFRAAITSYMDLVAMRAASGAGASEALADAAR-IGRGWPFARVRLALADARIS 211
Query: 231 FLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKK 290
A M +++ + L+ +D G +LR R +L A+ K
Sbjct: 212 -GYTPARALGRLGEEIGMHELQDLSAQLLLADATGAQAEVTLRERARSLRDAQLAVAQGK 270
Query: 291 AASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
A + + ++ L +L ++ P + + + +
Sbjct: 271 AGERSQTMVIAQLLLAL-GFMLFVLYPPVSNFMTAL 305
>gi|332982951|ref|YP_004464392.1| Type II secretion system F domain-containing protein [Mahella
australiensis 50-1 BON]
gi|332700629|gb|AEE97570.1| Type II secretion system F domain protein [Mahella australiensis
50-1 BON]
Length = 279
Score = 51.4 bits (122), Expect = 2e-04, Method: Composition-based stats.
Identities = 22/214 (10%), Positives = 70/214 (32%), Gaps = 14/214 (6%)
Query: 125 IIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWI-----------SNLVQ 173
++ ++ + L + + +I G P + + V
Sbjct: 65 LLGFTARNVYEYIAALLTYSAAAVLLMVYGIISGAGLIGPVMMTVAVMAYTIGRYRSAVS 124
Query: 174 KRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLP 233
+S + P +D ++ + + ++Q + +A+ G P +E+ +
Sbjct: 125 TYKSKFESQLPAVIDSMIQGLAIEMPVEQVISYIADTKSGVVTPFLKELRDMLF---TGS 181
Query: 234 NRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAAS 293
+ + A +T + L + L + + + KA +
Sbjct: 182 SLESALTEVSAKTLSPDFERVARILSFRSETTAEMIHGLEQIRDNMETRLETQIMAKANN 241
Query: 294 LGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
+ + +P++ ++ +++I+ P + ++
Sbjct: 242 MENTMILPIMAGYVLPYLVIILYPMLSDLLKFFS 275
>gi|327538077|gb|EGF24767.1| type II secretion system protein [Rhodopirellula baltica WH47]
Length = 297
Score = 51.4 bits (122), Expect = 2e-04, Method: Composition-based stats.
Identities = 28/201 (13%), Positives = 71/201 (35%), Gaps = 9/201 (4%)
Query: 123 VPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRA 182
+ + ++G + L P + ++I + S W + R S I+R
Sbjct: 70 LRFVPFVIGTLVSLTLGLLTSIPLSIVAAIGVVIALLLAQLESGWYAW----RLSRIERQ 125
Query: 183 WPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENF 242
D LD+++ + S A +A + PL +++ + + + F
Sbjct: 126 LIDLLDMMIPMLRS---GAGASAALAAASEVTASPLRDQIHWCVRRIQLGDSGSSVFREL 182
Query: 243 YNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLT--V 300
R +D + + + G S+ L + R + + ++ + +
Sbjct: 183 ARRMPIDAMELFSTTMSVHWETGGSLAPVLASVARVARDRQEVARRIRSNIAQSQFSTIA 242
Query: 301 PMIIFFLPVLILVIIGPAILS 321
+++ + L+L + P ++
Sbjct: 243 VLLLIYFVALVLWLDRPEVMK 263
>gi|160941846|ref|ZP_02089173.1| hypothetical protein CLOBOL_06742 [Clostridium bolteae ATCC
BAA-613]
gi|158435343|gb|EDP13110.1| hypothetical protein CLOBOL_06742 [Clostridium bolteae ATCC
BAA-613]
Length = 290
Score = 51.4 bits (122), Expect = 2e-04, Method: Composition-based stats.
Identities = 38/277 (13%), Positives = 101/277 (36%), Gaps = 15/277 (5%)
Query: 55 LRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLN--LKAILVDENIVNKLRAAGFRSEYS 112
LR + + + + + + ++ L + + +L+ L + + + + R
Sbjct: 24 LRLPSMGAARAIAERGSRKQKAAEFLEDGMDQLSVLLASHITLDEYRKR-RMGNILKAAG 82
Query: 113 LNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLV 172
+ + V ++ + I I L + V A + + + P +
Sbjct: 83 MGMTPEVHAASCMVKAGVTAIPILPCLLFLPLVTPVPVFAAVAVYFRESRRPE----ERL 138
Query: 173 QKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFL 232
++++ +++ P + + ++ S L + S L E+ + A++
Sbjct: 139 KEKRDRVEQELPRFVATIEQDLK---SSRDVLSILENFKKNTSDTLRAELDILTADMRSG 195
Query: 233 PNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAA 292
+ + A F R + + + LI R G ++L + + + +K+A
Sbjct: 196 -SYEAALTRFEARMNSPMLSDVVRGLIGVLR-GDDSAAYFQLLSHDFKQLEMQRLKKEAQ 253
Query: 293 SLGPKL---TVPMIIFFLPVLILVIIGPAILSIIDTM 326
+ PK+ + M++ FL + +I I S+ +
Sbjct: 254 KIPPKIRIFSFLMLLCFLMTYLAIIGYEIIKSLGNMF 290
>gi|19551553|ref|NP_599555.1| hypothetical protein NCgl0298 [Corynebacterium glutamicum ATCC
13032]
gi|62389200|ref|YP_224602.1| hypothetical protein cg0365 [Corynebacterium glutamicum ATCC 13032]
gi|41324533|emb|CAF18873.1| membrane protein [Corynebacterium glutamicum ATCC 13032]
Length = 191
Score = 51.4 bits (122), Expect = 2e-04, Method: Composition-based stats.
Identities = 29/136 (21%), Positives = 57/136 (41%), Gaps = 6/136 (4%)
Query: 187 LDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRT 246
++L C+++G++ A + VA L +A LS + AF
Sbjct: 55 IELFSACLDAGLNTRDAAQVVAHVAAITHREL---WTHVVALLSIGVSAPQAFALMAGVD 111
Query: 247 QMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFF 306
+D + N S R G+++ D R + + + + A G + +P+ + F
Sbjct: 112 GLDELANLATV---SHRSGSALSDGCRNISTSLLASAGDKRTAAAERAGVFIALPLALCF 168
Query: 307 LPVLILVIIGPAILSI 322
LP ++V + P +LS+
Sbjct: 169 LPAFMIVGLAPVVLSL 184
>gi|21227617|ref|NP_633539.1| transporter [Methanosarcina mazei Go1]
gi|20906004|gb|AAM31211.1| Transporter [Methanosarcina mazei Go1]
Length = 662
Score = 51.0 bits (121), Expect = 2e-04, Method: Composition-based stats.
Identities = 26/153 (16%), Positives = 65/153 (42%), Gaps = 4/153 (2%)
Query: 164 PSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEML 223
P + + R I P+ L L +SG+ + +L+ +AE G LS+E+
Sbjct: 433 PFIIFYEIRAWRMRKIDERMPEMLRNLSSMNDSGLLLSNSLKIMAESKMGI---LSKELK 489
Query: 224 LTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSER 283
+LS+ + A N + +I+++ + + L + + +SE
Sbjct: 490 KLKEDLSWGTSTSRALMKLENNIRTATSSRILHTVIKANESTSDLKSVLSITAEQVKSEE 549
Query: 284 LMEAEKKAASLGPKLTVPMIIFFLPVLILVIIG 316
++ +++++ + + + FF+ + I+ ++
Sbjct: 550 RLK-KERSSEMVVYVVTIYVSFFVFLFIVYVLA 581
Score = 49.9 bits (118), Expect = 6e-04, Method: Composition-based stats.
Identities = 29/196 (14%), Positives = 67/196 (34%), Gaps = 7/196 (3%)
Query: 120 RLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSI 179
RL + + G + Y L + + ++I V + P R++ I
Sbjct: 77 RLSLFVDSTRAGFAEEYLYLLALLVAILSFIISFLIIFGVAYIYP----YFQADIRKACI 132
Query: 180 KRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSF-LPNRQVA 238
++ A+ + + G+SI R ++ +EE+ + ++ + + A
Sbjct: 133 DKSMLPAVTYMYALTKGGMSIYDVFRSLSRHTHIFGTS-AEEISYIVRDMDYLGKDFITA 191
Query: 239 FENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKL 298
+ RT + ++ LI GT I ++ + + M +L
Sbjct: 192 LKEAKERTPSERFKDFVDGLILVSSSGT-ITGYIKNKSEQYQDMAEMANRNLLKTLDVLA 250
Query: 299 TVPMIIFFLPVLILVI 314
V + + L ++
Sbjct: 251 EVYVTVLVAGPLFIMT 266
>gi|32477852|ref|NP_870846.1| protein secretion system or pilus assembly related protein TadB
[Rhodopirellula baltica SH 1]
gi|32448409|emb|CAD77924.1| probable protein secretion system or pilus assembly related protein
TadB [Rhodopirellula baltica SH 1]
Length = 297
Score = 51.0 bits (121), Expect = 2e-04, Method: Composition-based stats.
Identities = 28/201 (13%), Positives = 70/201 (34%), Gaps = 9/201 (4%)
Query: 123 VPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRA 182
+ + ++G + L P + ++I + S W + R S I+R
Sbjct: 70 LRFVPFVIGALVSLTLGLLTSIPLSIVAAIGVVIALLLAQLESGWYAW----RLSRIERQ 125
Query: 183 WPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENF 242
D LD+++ + S A +A + PL +++ + + + F
Sbjct: 126 LIDLLDMMIPMLRS---GAGASAALAAASEVTASPLRDQIHWCVRRIQLGDSGSSVFREL 182
Query: 243 YNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLT--V 300
R +D + + + G S+ L + R + + ++ + +
Sbjct: 183 ARRMPIDAMELFSTTMSVHWETGGSLAPVLASVARVARDRQEVARRIRSNIAQSQFSTIA 242
Query: 301 PMIIFFLPVLILVIIGPAILS 321
+++ + L+L + P +
Sbjct: 243 VLLLIYFVALVLWLDRPEWMK 263
>gi|300914022|ref|ZP_07131339.1| Type II secretion system F domain protein [Thermoanaerobacter sp.
X561]
gi|300890707|gb|EFK85852.1| Type II secretion system F domain protein [Thermoanaerobacter sp.
X561]
Length = 303
Score = 51.0 bits (121), Expect = 2e-04, Method: Composition-based stats.
Identities = 23/195 (11%), Positives = 65/195 (33%), Gaps = 6/195 (3%)
Query: 133 IWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLI 192
+F L+ F+ + + + + L +++ + + D + +L
Sbjct: 82 FILFTIVILVFLSFKGFTLLGFTLPVMLYYLIDYILDYLGRRKIRKTEEQFRDFVKMLGA 141
Query: 193 CVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVR 252
++ S A + AE+ PL E + + + A + F + ++
Sbjct: 142 YLKMVPSFAGAFIKAAEEAEN---PLKEHTDRVLRRFQLGEDLEEALKEF-KNIESTYIK 197
Query: 253 NATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLIL 312
++I + R + + + M A ++ K + ++ + +I+
Sbjct: 198 VWIDSIIFAVRMKSDLSRVCERTAKKLYERIKMSNRIAAMTVQAKSLMVSLVGIMAFMIV 257
Query: 313 --VIIGPAILSIIDT 325
V + P + +
Sbjct: 258 STVSVSPDFIRTFSS 272
>gi|160893679|ref|ZP_02074463.1| hypothetical protein CLOL250_01233 [Clostridium sp. L2-50]
gi|156864664|gb|EDO58095.1| hypothetical protein CLOL250_01233 [Clostridium sp. L2-50]
Length = 290
Score = 51.0 bits (121), Expect = 2e-04, Method: Composition-based stats.
Identities = 25/145 (17%), Positives = 59/145 (40%), Gaps = 8/145 (5%)
Query: 173 QKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFL 232
+ ++ I+ P + + +++ ++ L R G L+ E+ + +A++
Sbjct: 139 KAKREEIEGELPRMVATMEQELKASRNVIGMLER---FKGNAGPALTGELDILLADMRS- 194
Query: 233 PNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAA 292
N + A F R + + + LI R G ++L + + L + +A
Sbjct: 195 SNYEAALTRFEARLNSPMLSDVVRGLIGVLR-GDDSTVYFQMLAHDFKQIELQRLKAQAQ 253
Query: 293 SLGPKL---TVPMIIFFLPVLILVI 314
+ PK+ + M++ FL + +I
Sbjct: 254 KIPPKIRVFSFVMLVCFLLTYLAII 278
>gi|283457407|ref|YP_003361983.1| Flp pilus assembly protein TadC [Rothia mucilaginosa DY-18]
gi|283133398|dbj|BAI64163.1| Flp pilus assembly protein TadC [Rothia mucilaginosa DY-18]
Length = 480
Score = 51.0 bits (121), Expect = 2e-04, Method: Composition-based stats.
Identities = 29/147 (19%), Positives = 43/147 (29%), Gaps = 25/147 (17%)
Query: 205 RRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQ-------- 256
+ A G V + + L A+L A + Q
Sbjct: 332 EKSASPAGSAPVDTALVLELLAAQLRVGLAPLAALGTLAEALNSRALHTVCQRLQMGSNW 391
Query: 257 -----------------ALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLT 299
AL + G L L R AE+ A L L
Sbjct: 392 GSAWSGSAAGTFGELRDALAPAYTGGAPSTALLLSLADAHRLSERRAAERAAGKLSVALV 451
Query: 300 VPMIIFFLPVLILVIIGPAILSIIDTM 326
VP+ + LP I + I P I+S++ T+
Sbjct: 452 VPLGLCSLPAFICLGIVPIIISLLPTL 478
>gi|315227312|ref|ZP_07869099.1| conserved hypothetical protein [Parascardovia denticolens DSM
10105]
gi|315119762|gb|EFT82895.1| conserved hypothetical protein [Parascardovia denticolens DSM
10105]
Length = 209
Score = 51.0 bits (121), Expect = 3e-04, Method: Composition-based stats.
Identities = 27/138 (19%), Positives = 58/138 (42%), Gaps = 7/138 (5%)
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAF----EN 241
L++L++ + +G SI ++L V + P+ + L + A+
Sbjct: 66 VLEMLIVSISNGASIPRSLEAVGTVMKN---PVGKAFKEVAEALYRGSSWADAWELGRRG 122
Query: 242 FYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVP 301
+ + +AL S R+G S + L + E ++ + + L K+ +P
Sbjct: 123 IGDERGREVFDVVDRALEPSWRHGLSPLNRLETTIEEANRQQNRRLDDAVSKLSVKILLP 182
Query: 302 MIIFFLPVLILVIIGPAI 319
+ + FLP I+V + P++
Sbjct: 183 LGLCFLPAFIVVTVLPSL 200
>gi|315501227|ref|YP_004080114.1| type ii secretion system f domain protein [Micromonospora sp. L5]
gi|315407846|gb|ADU05963.1| Type II secretion system F domain protein [Micromonospora sp. L5]
Length = 242
Score = 51.0 bits (121), Expect = 3e-04, Method: Composition-based stats.
Identities = 41/173 (23%), Positives = 78/173 (45%), Gaps = 10/173 (5%)
Query: 155 LIGYVGFCAPSVWISNL----VQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAED 210
+G + A + + ++R+ P A DLL + +G +D+++ VAE
Sbjct: 72 FLGLLAGAAADRLLRRIEPRAARERRLRETADLPLAADLLAAALRAGAPVDRSVLAVAEA 131
Query: 211 IGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGD 270
+GG PL++ + L + A+ + T + V A ++S G ++
Sbjct: 132 LGG---PLADRLGRVGRTLRLGGSPGEAWAHLEGVTGAEPV---VAAAVRSSNSGAALAR 185
Query: 271 SLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSII 323
+L L + R+ER AE A G + +P+ + FLP IL + P I++++
Sbjct: 186 ALTRLADDLRAERSTSAEAAARRAGVLIVLPLGLCFLPAFILAGLVPVIVAVL 238
>gi|281415508|ref|ZP_06247250.1| type II secretion system protein F [Micrococcus luteus NCTC 2665]
Length = 239
Score = 51.0 bits (121), Expect = 3e-04, Method: Composition-based stats.
Identities = 33/186 (17%), Positives = 70/186 (37%), Gaps = 10/186 (5%)
Query: 140 KLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGIS 199
L+ PF V AV L+ ++ + + + + +++ A LD+L + +G S
Sbjct: 61 DLVRSPFGAVVAAVGLLFWLAGRSWTRLLLRAAAREPAAVGAAV--VLDVLAALLSAGRS 118
Query: 200 IDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALI 259
+ AL + + G + + T A L + + A+ L
Sbjct: 119 LPAALDDLGRTLPG-----ARGLRATAALLLWGRDWDEAWAGLDT---DPVWIETAARLR 170
Query: 260 QSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAI 319
R G + +L + R + E+ A L L +P+ + LP + + P +
Sbjct: 171 PLHRSGMAGARTLAETAAAVRQQTRRADERAAEELAVCLVMPLGLCLLPAFVCWGVVPVV 230
Query: 320 LSIIDT 325
++++
Sbjct: 231 MALLRA 236
>gi|309810812|ref|ZP_07704613.1| conserved hypothetical protein [Dermacoccus sp. Ellin185]
gi|308435118|gb|EFP58949.1| conserved hypothetical protein [Dermacoccus sp. Ellin185]
Length = 206
Score = 51.0 bits (121), Expect = 3e-04, Method: Composition-based stats.
Identities = 21/103 (20%), Positives = 39/103 (37%), Gaps = 5/103 (4%)
Query: 222 MLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRS 281
+ A L + + + A+ R A + R G + LR + R
Sbjct: 106 VSRVAAALRWGVDERSAWA-----LAPPVWRPVATAFELAGRCGAAPSSLLRQAADDLRR 160
Query: 282 ERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIID 324
+ A G ++ +P+ + FLP IL+ I P +L ++
Sbjct: 161 SEAERVTQAGAKAGVRIVLPLGLCFLPAFILIAIVPLVLGLVK 203
>gi|134298819|ref|YP_001112315.1| hypothetical protein Dred_0955 [Desulfotomaculum reducens MI-1]
gi|134051519|gb|ABO49490.1| hypothetical protein Dred_0955 [Desulfotomaculum reducens MI-1]
Length = 330
Score = 50.6 bits (120), Expect = 3e-04, Method: Composition-based stats.
Identities = 29/206 (14%), Positives = 80/206 (38%), Gaps = 8/206 (3%)
Query: 110 EYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWIS 169
+ + +L+ + I+F I+ ++ + L+ +GA I++ ++ P ++S
Sbjct: 91 RWLIPEILLTSVKALIVFSIVAVLGLMIGTLWLKN-----IGAAIILAFLCILLPGQYLS 145
Query: 170 NLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAEL 229
++Q +P + L+ +E + A+ VAE S L + ++
Sbjct: 146 RQDLRKQEKYISQFPIVVRTFLVALEQKGNARSAISYVAERAPEPSKSL---FQTILLKI 202
Query: 230 SFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEK 289
++A + ++ Q L + GT++ L + + + E
Sbjct: 203 DSGFEPKLALKEITKEIKVSHAHLFEQLLADAYYQGTTLIPQFTRLAGQVDAMNELILEN 262
Query: 290 KAASLGPKLTVPMIIFFLPVLILVII 315
+ ++ ++ F + +L ++++
Sbjct: 263 AQTTHAGRIQNFIMHFLVVILAVMLV 288
>gi|320116991|ref|YP_004187150.1| type II secretion system F domain-containing protein
[Thermoanaerobacter brockii subsp. finnii Ako-1]
gi|319930082|gb|ADV80767.1| Type II secretion system F domain protein [Thermoanaerobacter
brockii subsp. finnii Ako-1]
Length = 304
Score = 50.6 bits (120), Expect = 3e-04, Method: Composition-based stats.
Identities = 23/195 (11%), Positives = 65/195 (33%), Gaps = 6/195 (3%)
Query: 133 IWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLI 192
+F L+ F+ + + + + L +++ + + D + +L
Sbjct: 83 FILFTIVILVFLSFKGFTLLGFTLPVMLYYLIDYILDYLGRRKIRKTEEQFRDFVKMLGA 142
Query: 193 CVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVR 252
++ S A + AE+ PL E + + + A + F + ++
Sbjct: 143 YLKMVPSFAGAFIKAAEEAEN---PLKEHTDRVLRRFQLGEDLEEALKEF-KNIESTYIK 198
Query: 253 NATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLIL 312
++I + R + + + M A ++ K + ++ + +I+
Sbjct: 199 VWIDSIIFAVRMKSDLSRVCERTAKKLYERIKMSNRIAAMTVQAKSLMVSLVGIMAFMIV 258
Query: 313 --VIIGPAILSIIDT 325
V + P + +
Sbjct: 259 STVSVSPDFIRTFSS 273
>gi|257057540|ref|YP_003135372.1| Flp pilus assembly protein TadC [Saccharomonospora viridis DSM
43017]
gi|256587412|gb|ACU98545.1| Flp pilus assembly protein TadC [Saccharomonospora viridis DSM
43017]
Length = 212
Score = 50.6 bits (120), Expect = 3e-04, Method: Composition-based stats.
Identities = 27/142 (19%), Positives = 59/142 (41%), Gaps = 6/142 (4%)
Query: 185 DALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYN 244
DLL C+ +G+ + A+ VA+ G P++E + T L+ + + A+++
Sbjct: 73 FLADLLGACLIAGLPVPTAVSTVADVATG---PVAEVLRSTGNALALGASAESAWQHAR- 128
Query: 245 RTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMII 304
+A ++ G+++ L R+ E +A + P+ +
Sbjct: 129 --NHPDTAELARAACRTASSGSALAAQAFALAERIRNAATDRVEARAQRASVLVAGPLGL 186
Query: 305 FFLPVLILVIIGPAILSIIDTM 326
FLP + + + P +L + D +
Sbjct: 187 CFLPAFLCLGVIPVVLGLADHL 208
>gi|84495076|ref|ZP_00994195.1| hypothetical protein JNB_09759 [Janibacter sp. HTCC2649]
gi|84384569|gb|EAQ00449.1| hypothetical protein JNB_09759 [Janibacter sp. HTCC2649]
Length = 204
Score = 50.6 bits (120), Expect = 3e-04, Method: Composition-based stats.
Identities = 27/146 (18%), Positives = 57/146 (39%), Gaps = 8/146 (5%)
Query: 180 KRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAF 239
DAL L + + SG+ +AL VA+ +GG ++ ++ + + + + ++
Sbjct: 62 VDEAADALVLCALALRSGLGPIEALEAVADHVGG---AVARQLRVVASAHRWGQDAATSW 118
Query: 240 ENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLT 299
+ + R A A +++ G + + R E E G L
Sbjct: 119 AHVG-----EAWRPAALAWQAAEQSGAAPAGVVLAAAERMRREEASRVEAAVQRAGVLLV 173
Query: 300 VPMIIFFLPVLILVIIGPAILSIIDT 325
+P+ FLP + + P +L + +
Sbjct: 174 LPLGACFLPGFVGTTVVPVVLHLARS 199
>gi|167036497|ref|YP_001664075.1| type II secretion system protein [Thermoanaerobacter
pseudethanolicus ATCC 33223]
gi|167038602|ref|YP_001666180.1| type II secretion system protein [Thermoanaerobacter
pseudethanolicus ATCC 33223]
gi|167039381|ref|YP_001662366.1| type II secretion system protein [Thermoanaerobacter sp. X514]
gi|307725293|ref|YP_003905044.1| type II secretion system F domain-containing protein
[Thermoanaerobacter sp. X513]
gi|320114925|ref|YP_004185084.1| type II secretion system F domain-containing protein
[Thermoanaerobacter brockii subsp. finnii Ako-1]
gi|166853621|gb|ABY92030.1| type II secretion system protein [Thermoanaerobacter sp. X514]
gi|166855331|gb|ABY93739.1| type II secretion system protein [Thermoanaerobacter
pseudethanolicus ATCC 33223]
gi|166857436|gb|ABY95844.1| type II secretion system protein [Thermoanaerobacter
pseudethanolicus ATCC 33223]
gi|307582354|gb|ADN55753.1| Type II secretion system F domain protein [Thermoanaerobacter sp.
X513]
gi|319928016|gb|ADV78701.1| Type II secretion system F domain protein [Thermoanaerobacter
brockii subsp. finnii Ako-1]
Length = 301
Score = 50.6 bits (120), Expect = 3e-04, Method: Composition-based stats.
Identities = 23/195 (11%), Positives = 65/195 (33%), Gaps = 6/195 (3%)
Query: 133 IWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLI 192
+F L+ F+ + + + + L +++ + + D + +L
Sbjct: 80 FILFTIVILVFLSFKGFTLLGFTLPVMLYYLIDYILDYLGRRKIRKTEEQFRDFVKMLGA 139
Query: 193 CVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVR 252
++ S A + AE+ PL E + + + A + F + ++
Sbjct: 140 YLKMVPSFAGAFIKAAEEAEN---PLKEHTDRVLRRFQLGEDLEEALKEF-KNIESTYIK 195
Query: 253 NATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLIL 312
++I + R + + + M A ++ K + ++ + +I+
Sbjct: 196 VWIDSIIFAVRMKSDLSRVCERTAKKLYERIKMSNRIAAMTVQAKSLMVSLVGIMAFMIV 255
Query: 313 --VIIGPAILSIIDT 325
V + P + +
Sbjct: 256 STVSVSPDFIRTFSS 270
>gi|325066926|ref|ZP_08125599.1| type II secretion system protein [Actinomyces oris K20]
Length = 283
Score = 50.6 bits (120), Expect = 3e-04, Method: Composition-based stats.
Identities = 28/141 (19%), Positives = 55/141 (39%), Gaps = 4/141 (2%)
Query: 152 AVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDI 211
+ + P + IS+ + R++ ++ WP+A+D L+ V +G+S+ +AL + E
Sbjct: 76 VALAFSAIFTAIPFLIISSRARNRRTRLREVWPEAVDTLVSGVRAGMSLPEALTNLGERG 135
Query: 212 GGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRY-GTSIGD 270
P + + + + + R +AL + GT +G
Sbjct: 136 PEAVRP---QFRAFATDYAASARFDSSLDRLKTRFADPVADRIVEALRLAHEVGGTDLGT 192
Query: 271 SLRVLVSETRSERLMEAEKKA 291
LR L R + E +A
Sbjct: 193 LLRSLSQMLREDMRTRGELEA 213
>gi|305680311|ref|ZP_07403119.1| type II secretion system F domain protein [Corynebacterium
matruchotii ATCC 14266]
gi|305659842|gb|EFM49341.1| type II secretion system F domain protein [Corynebacterium
matruchotii ATCC 14266]
Length = 172
Score = 50.6 bits (120), Expect = 3e-04, Method: Composition-based stats.
Identities = 26/136 (19%), Positives = 54/136 (39%), Gaps = 9/136 (6%)
Query: 187 LDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRT 246
L+L + CV +G+S +A VA + T + LS + A+
Sbjct: 38 LELFVACVSAGLSPARAAAAVATTSSCVA------WRSTASLLSLGVDVDRAWRELAQAP 91
Query: 247 QMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFF 306
+ + ++ S G + + + + R + A +A G + +PM + +
Sbjct: 92 GLGELAALARS---SHHSGAGLSNGCSRIAARLRDDGADHATAEAERAGVLIALPMTLCY 148
Query: 307 LPVLILVIIGPAILSI 322
LP L+ + P ++S+
Sbjct: 149 LPAFFLLGLAPMVISL 164
>gi|163814843|ref|ZP_02206231.1| hypothetical protein COPEUT_00993 [Coprococcus eutactus ATCC 27759]
gi|158449782|gb|EDP26777.1| hypothetical protein COPEUT_00993 [Coprococcus eutactus ATCC 27759]
Length = 246
Score = 50.6 bits (120), Expect = 3e-04, Method: Composition-based stats.
Identities = 37/190 (19%), Positives = 77/190 (40%), Gaps = 5/190 (2%)
Query: 130 LGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKR-QSSIKRAWPDALD 188
+GI + AV ++G G A +S R Q + + + L
Sbjct: 15 IGIAITYMVVTAAIAVLFYDNAAVCVVGVPGLLAMFRMVSRSKCIRMQKKLNMEFKEMLL 74
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSE---EMLLTIAELSFLPNRQVAFENFYNR 245
L + +G S+++A V +++ G S E+ + IA L + ++ +NF R
Sbjct: 75 SLAANMAAGYSMEKAFVPVYQEMEGLYQGRSYIQGEIKMIIAGLEMNTDMKILLKNFAER 134
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
+ +D V + + R G ++ ++ +V ERL ++ + K I+
Sbjct: 135 SGLDDVMEFAKVSAVAGRSGGNLIKMMKKMVQTI-EERLEVEDEIDTMVTAKRMEYNIMS 193
Query: 306 FLPVLILVII 315
+P +I++ +
Sbjct: 194 AMPFVIVLYM 203
>gi|308235608|ref|ZP_07666345.1| hypothetical protein GvagA14_05189 [Gardnerella vaginalis ATCC
14018]
gi|311113936|ref|YP_003985157.1| hypothetical protein HMPREF0421_20048 [Gardnerella vaginalis ATCC
14019]
gi|310945430|gb|ADP38134.1| conserved hypothetical protein [Gardnerella vaginalis ATCC 14019]
Length = 205
Score = 50.6 bits (120), Expect = 3e-04, Method: Composition-based stats.
Identities = 30/146 (20%), Positives = 58/146 (39%), Gaps = 12/146 (8%)
Query: 187 LDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFEN----F 242
L ++++ ++SG++I +AL V I G + + A+ F
Sbjct: 62 LQMMIVALKSGVAITRALDAVGSSIPGGKGIWLRNVSKALL---SGDTWIEAWSAPYVCF 118
Query: 243 YNRTQMDCVRNATQA-LIQSDRY----GTSIGDSLRVLVSETRSERLMEAEKKAASLGPK 297
+ + L QS R G+S L ++ A+K+++ L +
Sbjct: 119 DKKDKNPSASFVLSMWLRQSLRESWSCGSSPVPVLIAILQNYEQSMRNVAKKESSRLSVR 178
Query: 298 LTVPMIIFFLPVLILVIIGPAILSII 323
L +P+ + FLP I V I P + + +
Sbjct: 179 LLLPVGLCFLPAFIFVGILPTVSAFM 204
>gi|25026856|ref|NP_736910.1| hypothetical protein CE0300 [Corynebacterium efficiens YS-314]
gi|259506083|ref|ZP_05748985.1| membrane protein [Corynebacterium efficiens YS-314]
gi|23492136|dbj|BAC17110.1| conserved hypothetical protein [Corynebacterium efficiens YS-314]
gi|259166371|gb|EEW50925.1| membrane protein [Corynebacterium efficiens YS-314]
Length = 205
Score = 50.3 bits (119), Expect = 4e-04, Method: Composition-based stats.
Identities = 36/152 (23%), Positives = 60/152 (39%), Gaps = 26/152 (17%)
Query: 184 PDALD------LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQV 237
PD LD L C+ +G+S A +A L EE T+A L +
Sbjct: 59 PDPLDTAADIALFAECLAAGLSTRDAAHLLACTANPAHQRLWEE---TVALLGIGVGPEK 115
Query: 238 AFENFYNRTQMDCVRNATQALIQSDRYGTS-------IGDSLRVLVSETRSERLMEAEKK 290
AF T +D +R+ S R G++ I D+L ++ R+
Sbjct: 116 AFTTM---TGVDGLRDLAVLAEVSHRSGSAFSQGCHRIADALVASAADHRTA-------A 165
Query: 291 AASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
A G + +P+ FLP +++ + P +L +
Sbjct: 166 AERAGVFIALPLAACFLPAFMIIGLAPVVLGL 197
>gi|292654912|ref|YP_003534809.1| type IV pilus biogenesis complex membrane subunit [Haloferax
volcanii DS2]
gi|291370705|gb|ADE02932.1| type IV pilus biogenesis complex membrane subunit [Haloferax
volcanii DS2]
Length = 587
Score = 50.3 bits (119), Expect = 4e-04, Method: Composition-based stats.
Identities = 35/180 (19%), Positives = 66/180 (36%), Gaps = 7/180 (3%)
Query: 120 RLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSI 179
RL+ + GI+ D L+ A + G F A + +++ R ++
Sbjct: 309 RLLGVAGGAVAGIVGFVAADALVAPWLAPLAAAGLGTGTALFVAARPVV--VLRARVRAV 366
Query: 180 KRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAF 239
+ PDAL L+ V G +++ AL R A + G++ L +E + L +F
Sbjct: 367 EDGLPDALYLVGRAVSEGEAVESALARAATSVPGETGDLLDEAVGVQRRLRVGV--VESF 424
Query: 240 ENFY---NRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGP 296
Y T V L + G G ++ + + + ++AE +
Sbjct: 425 RGEYGVLESTPGPRVAGVATLLGLAASEGRPAGRAIVSMADQLSALARLDAEARRELASV 484
>gi|256397693|ref|YP_003119257.1| type II secretion system protein [Catenulispora acidiphila DSM
44928]
gi|256363919|gb|ACU77416.1| type II secretion system protein [Catenulispora acidiphila DSM
44928]
Length = 283
Score = 50.3 bits (119), Expect = 4e-04, Method: Composition-based stats.
Identities = 36/198 (18%), Positives = 77/198 (38%), Gaps = 7/198 (3%)
Query: 131 GIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLL 190
G + + +L++ I + V + + + ++ LD+
Sbjct: 91 GFLLSWLLQSVLDFSLPFTGFLSIAVAGVFWYLVDADATAKAAEARADALADLSVFLDVT 150
Query: 191 LICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLP--NRQVAFENFYNRTQM 248
+ + +G ++QAL A +IG + E L +++FL F +
Sbjct: 151 VNALAAGTGVEQALGG-ASEIGDSP---AFERLRHALDVAFLSRLPIHQVFAELGTTLGL 206
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP 308
+ + +L + G I SL R++ L + E +AA+ ++TVP I +
Sbjct: 207 AEITDLAASLQLAGAEGAKIRTSLAAKAEAIRAKILADEEAEAAATTERMTVP-IALLMT 265
Query: 309 VLILVIIGPAILSIIDTM 326
+++I PA+ S + +
Sbjct: 266 GFLVLIGYPAMASALSAL 283
>gi|51891529|ref|YP_074220.1| putative sercretion system protein [Symbiobacterium thermophilum
IAM 14863]
gi|51855218|dbj|BAD39376.1| putative sercretion system protein [Symbiobacterium thermophilum
IAM 14863]
Length = 299
Score = 50.3 bits (119), Expect = 4e-04, Method: Composition-based stats.
Identities = 18/123 (14%), Positives = 39/123 (31%), Gaps = 7/123 (5%)
Query: 181 RAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFE 240
P+ L L+ + +G ++ QA++ V + P+ E + A
Sbjct: 125 EQLPETLMLMASVIRAGGTLYQAVQTVVQQ---APQPMRGEFERVARAMQLQVPAGDALG 181
Query: 241 NFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSET-RSERLMEAEKKA---ASLGP 296
+R + + A + G + L + E + + A + A
Sbjct: 182 LIRDRVGLGEFTSVVVACKVAGEAGGDLDRVLESISRELVEDRQFLRAMEAACAEGKASA 241
Query: 297 KLT 299
+L
Sbjct: 242 RLV 244
>gi|182437111|ref|YP_001824830.1| hypothetical protein SGR_3318 [Streptomyces griseus subsp. griseus
NBRC 13350]
gi|178465627|dbj|BAG20147.1| hypothetical protein [Streptomyces griseus subsp. griseus NBRC
13350]
Length = 280
Score = 50.3 bits (119), Expect = 4e-04, Method: Composition-based stats.
Identities = 30/134 (22%), Positives = 55/134 (41%), Gaps = 6/134 (4%)
Query: 193 CVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVR 252
C+ G +A V + IGG P+ + + T AE+ A+ F +
Sbjct: 145 CIAVGAGPREAAAEVGDSIGG---PVGDRLARTAAEIRLGGEPAEAWGRFGE---IPGAG 198
Query: 253 NATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLIL 312
+ L ++ G + + L + R+ER A +A G +T P+ + FLP +
Sbjct: 199 PLARCLHRAGSTGAPAAEPVARLAASIRAERAAAAVARAQRAGVLITAPVGLCFLPAFLA 258
Query: 313 VIIGPAILSIIDTM 326
V + P I+ + +
Sbjct: 259 VGVAPVIIGLAGDL 272
>gi|153815434|ref|ZP_01968102.1| hypothetical protein RUMTOR_01669 [Ruminococcus torques ATCC 27756]
gi|145847293|gb|EDK24211.1| hypothetical protein RUMTOR_01669 [Ruminococcus torques ATCC 27756]
Length = 205
Score = 50.3 bits (119), Expect = 4e-04, Method: Composition-based stats.
Identities = 23/165 (13%), Positives = 61/165 (36%), Gaps = 4/165 (2%)
Query: 168 ISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVP---LSEEMLL 224
+ +L +K++ + + +A+ + +++G S++ A+R +D+ + +E
Sbjct: 13 LRDLCRKKEKEFRVQFSNAIQAMGAALKAGYSVENAIREAEKDLAPMYEENVRIRKEFRK 72
Query: 225 TIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERL 284
+ +L E F R + + + + G +R V +
Sbjct: 73 MVHQLDMKMPAVSVMEQFSERMKQEDTEDFVTVFSSAKMSGGDSISIIRNAVKIISGKID 132
Query: 285 MEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMKDH 329
E E + KL I+ +P I++ + + + ++
Sbjct: 133 TEQEIQTMFASKKLEFE-IMCAVPFFIILYMKLTFGEFLSVLYEN 176
>gi|188592035|ref|YP_001796633.1| type II secretion system protein [Cupriavidus taiwanensis LMG
19424]
gi|170938409|emb|CAP63396.1| Type II secretion system protein [Cupriavidus taiwanensis LMG
19424]
Length = 308
Score = 50.3 bits (119), Expect = 4e-04, Method: Composition-based stats.
Identities = 29/207 (14%), Positives = 67/207 (32%), Gaps = 16/207 (7%)
Query: 121 LVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIK 180
++ + L+L + + L L V + + V++ +
Sbjct: 85 ALLWLSPLVLCTLAGAVAGQWLGAVSALVVALAVTACAA---------WHRVRRLHKKLL 135
Query: 181 RAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFE 240
P LD ++ + G S+ A + I PL + ++ + A
Sbjct: 136 SQLPGFLDGVVRLMTIGSSVPAAFQ---NSIANTEAPLRQCLVQAVHLQRAGKELDQAVL 192
Query: 241 NFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV 300
+++ + L S RYG + + R + E A S +L+
Sbjct: 193 QVGRAYKVEELVLVASVLRLSVRYGGRADVVMERTATFMRDREQAQRELMALSAETRLSA 252
Query: 301 PMIIFFLPVLI---LVIIGPAILSIID 324
++ LP+++ L + + ++
Sbjct: 253 -WVLGLLPLVVAGGLFTLNAGYILMMW 278
>gi|302864763|ref|YP_003833400.1| Type II secretion system F domain-containing protein
[Micromonospora aurantiaca ATCC 27029]
gi|315501057|ref|YP_004079944.1| type ii secretion system f domain protein [Micromonospora sp. L5]
gi|302567622|gb|ADL43824.1| Type II secretion system F domain [Micromonospora aurantiaca ATCC
27029]
gi|315407676|gb|ADU05793.1| Type II secretion system F domain protein [Micromonospora sp. L5]
Length = 287
Score = 50.3 bits (119), Expect = 4e-04, Method: Composition-based stats.
Identities = 31/215 (14%), Positives = 71/215 (33%), Gaps = 5/215 (2%)
Query: 108 RSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVW 167
R+ + +++ +V + +F L + + +G
Sbjct: 78 RTPEQYALSVLLSALVGFATPAVASAVLFVGGVALPVAVPVVASLGLALGAGLLA--HRT 135
Query: 168 ISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIA 227
+ + ++A LDL+ + + + Q+L R A G E L +A
Sbjct: 136 VLAKADAARDEFRQAVCTYLDLVALQLSAAHGPVQSLERAAAVCDGWVFDRIRE-ALRLA 194
Query: 228 ELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEA 287
+L + R + + + + S G + ++LR R + +
Sbjct: 195 QLQMHSPWDE-LQELAERIGIPELGDVGAIMRSSGSEGAQVHETLRSRADSLRDQIRTDN 253
Query: 288 EKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
+A + KL +P + VL+ + P + +
Sbjct: 254 LARAEGVTSKLDIPGSLLVF-VLLGFAVYPFLARL 287
>gi|294787153|ref|ZP_06752406.1| putative bacterial type II secretion system protein F domain
protein [Parascardovia denticolens F0305]
gi|294484509|gb|EFG32144.1| putative bacterial type II secretion system protein F domain
protein [Parascardovia denticolens F0305]
Length = 177
Score = 50.3 bits (119), Expect = 4e-04, Method: Composition-based stats.
Identities = 27/138 (19%), Positives = 58/138 (42%), Gaps = 7/138 (5%)
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAF----EN 241
L++L++ + +G SI ++L V + P+ + L + A+
Sbjct: 34 VLEMLIVSISNGASIPRSLEAVGTVMKN---PVGKAFKEVAEALYRGSSWADAWELGRRG 90
Query: 242 FYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVP 301
+ + +AL S R+G S + L + E ++ + + L K+ +P
Sbjct: 91 IGDERGREVFDVVDRALEPSWRHGLSPLNRLETTIEEANRQQNRRLDDAVSKLSVKILLP 150
Query: 302 MIIFFLPVLILVIIGPAI 319
+ + FLP I+V + P++
Sbjct: 151 LGLCFLPAFIVVTVLPSL 168
>gi|154507637|ref|ZP_02043279.1| hypothetical protein ACTODO_00118 [Actinomyces odontolyticus ATCC
17982]
gi|153797271|gb|EDN79691.1| hypothetical protein ACTODO_00118 [Actinomyces odontolyticus ATCC
17982]
Length = 292
Score = 50.3 bits (119), Expect = 4e-04, Method: Composition-based stats.
Identities = 33/168 (19%), Positives = 67/168 (39%), Gaps = 7/168 (4%)
Query: 125 IIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWP 184
+I L LG+ F +L V ++ +G P W+ + + +++ AWP
Sbjct: 58 LIALSLGV-GSFVALAILAVTGAWPVALIVSVGVA--FLPYAWVVSRLGAHAKTVRAAWP 114
Query: 185 DALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYN 244
+ +D ++ V +G ++ Q L +AE+ VP+ + S ++A +
Sbjct: 115 EVIDAMVSGVRAGTALPQVLCDLAEE---GPVPVRFAFEAFSRDYSANGRFELALDTMKE 171
Query: 245 RTQMDCVRNATQALIQSDRYGTS-IGDSLRVLVSETRSERLMEAEKKA 291
+AL + G + + L+ L S R + + E +A
Sbjct: 172 TVADPVADRIVEALRIARSVGGADLTRLLQDLASLLREDARVRGELEA 219
>gi|238755455|ref|ZP_04616795.1| hypothetical protein yruck0001_3320 [Yersinia ruckeri ATCC 29473]
gi|238706296|gb|EEP98673.1| hypothetical protein yruck0001_3320 [Yersinia ruckeri ATCC 29473]
Length = 165
Score = 50.3 bits (119), Expect = 4e-04, Method: Composition-based stats.
Identities = 23/138 (16%), Positives = 53/138 (38%), Gaps = 5/138 (3%)
Query: 190 LLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMD 249
+ + SG +++Q L R ++I G L E L L+ ++ F + Y +
Sbjct: 1 MNMAASSGANLNQILERCGKEIQG---ELGNEFNLIYRRLNLGEAPEIVFNDAYRKFNYA 57
Query: 250 CVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLT--VPMIIFFL 307
T ++ + + G + D ++ + ++ K + ++T V +I +
Sbjct: 58 EFHFFTSVILLNIKQGGQLSDLIKKMHKGITESNKLKQRKAIMTAQIRMTTNVVSLIPIV 117
Query: 308 PVLILVIIGPAILSIIDT 325
L I P + + +
Sbjct: 118 FTAFLYYIDPNSIETLWS 135
>gi|207739455|ref|YP_002257848.1| pilus assembly protein tadb [Ralstonia solanacearum IPO1609]
gi|206592831|emb|CAQ59737.1| pilus assembly protein tadb [Ralstonia solanacearum IPO1609]
Length = 319
Score = 49.9 bits (118), Expect = 5e-04, Method: Composition-based stats.
Identities = 31/188 (16%), Positives = 66/188 (35%), Gaps = 8/188 (4%)
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
L+ G + + V A++L V + ++ + + + P L
Sbjct: 98 LVFGPLAVIALVAWAVSSLLSAVTAILLYALVAAFL----FWSRTRRMKERLMQQLPGFL 153
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQ 247
D ++ + G ++ A + + PL + LT + A + +
Sbjct: 154 DGVVRLMSIGSAVPAAFQAAS---ANTEPPLRTCLALTTQLQRAGKDLDAAVLAVGQQYR 210
Query: 248 MDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFL 307
++ + + L + RYG + + R + E A S +L+ I+ L
Sbjct: 211 VNELVLLSSVLRLALRYGGRADIVMERTAAFMRDREQAQKELLALSAETRLSA-WILGLL 269
Query: 308 PVLILVII 315
PV++ II
Sbjct: 270 PVVVGGII 277
>gi|326777721|ref|ZP_08236986.1| Type II secretion system F domain protein [Streptomyces cf. griseus
XylebKG-1]
gi|326658054|gb|EGE42900.1| Type II secretion system F domain protein [Streptomyces cf. griseus
XylebKG-1]
Length = 280
Score = 49.9 bits (118), Expect = 5e-04, Method: Composition-based stats.
Identities = 30/134 (22%), Positives = 55/134 (41%), Gaps = 6/134 (4%)
Query: 193 CVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVR 252
C+ G +A V + IGG P+ + + T AE+ A+ F +
Sbjct: 145 CIAVGAGPREAAAEVGDSIGG---PVGDRLARTAAEIRLGGEPAEAWGRFGE---IPGAG 198
Query: 253 NATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLIL 312
+ L ++ G + + L + R+ER A +A G +T P+ + FLP +
Sbjct: 199 PLARCLHRAGSTGAPAAEPVARLAASIRAERAAAAVARAQRAGVLITAPVGLCFLPAFLA 258
Query: 313 VIIGPAILSIIDTM 326
V + P I+ + +
Sbjct: 259 VGVAPVIIGLAGDL 272
>gi|296453319|ref|YP_003660462.1| hypothetical protein BLJ_0138 [Bifidobacterium longum subsp. longum
JDM301]
gi|296182750|gb|ADG99631.1| conserved hypothetical membrane protein with unknown function
[Bifidobacterium longum subsp. longum JDM301]
Length = 200
Score = 49.9 bits (118), Expect = 5e-04, Method: Composition-based stats.
Identities = 36/153 (23%), Positives = 55/153 (35%), Gaps = 19/153 (12%)
Query: 187 LDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFEN-FY-- 243
L +L + + G SI +AL V + +GG M L+ A+
Sbjct: 50 LRMLQVSLRQGSSIPRALDMVGKAVGGDCGA---RMSEVGNSLTRGVPWADAWHAAMAVQ 106
Query: 244 -------------NRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKK 290
T + AL S +G G L + + + E+
Sbjct: 107 HEGAPADSPSKGNTNTTQRDLGLLQSALESSWTHGDMPGVRLESAIEQLDRDERAAIERN 166
Query: 291 AASLGPKLTVPMIIFFLPVLILVIIGPAILSII 323
AA L KL +P + FLP +LV + PAI S +
Sbjct: 167 AAKLSVKLLMPTGLCFLPAFVLVGVIPAIASFM 199
>gi|89892802|ref|YP_516289.1| hypothetical protein DSY0056 [Desulfitobacterium hafniense Y51]
gi|89332250|dbj|BAE81845.1| hypothetical protein [Desulfitobacterium hafniense Y51]
Length = 256
Score = 49.9 bits (118), Expect = 5e-04, Method: Composition-based stats.
Identities = 35/230 (15%), Positives = 81/230 (35%), Gaps = 18/230 (7%)
Query: 96 ENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVIL 155
+ N L AAG L + + I IL + + L V+
Sbjct: 38 SRMANVLSAAGLSDSPELFTAMAIVKAAAIALCILPCLIV----------LPLLAPIVLF 87
Query: 156 IGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQS 215
+ + + ++ I++ P + + +++ + L +
Sbjct: 88 AAILVYFKEIRKADEALAAKRGKIEQELPRFVATITQELKASRDV---LSMLENFKRNAG 144
Query: 216 VPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVL 275
+ E+ + A++ + + A F R + + T+ LI R G G ++L
Sbjct: 145 EDFAAELDILTADMRS-SSYEAALTRFEARFNSPMLSDITRGLIGVLR-GDDGGMYFQML 202
Query: 276 VSETRSERLMEAEKKAASLGPKL---TVPMIIFFLPVLILVIIGPAILSI 322
+ + L + +A + PK+ + M++ FL + +I+ + S+
Sbjct: 203 AHDMKQLELQRLKAQAMKIPPKIRVFSFAMLMCFLMTYMAIIVYEIVTSL 252
>gi|83747914|ref|ZP_00944946.1| TRANSMEMBRANE PILUS ASSEMBLY PROTEIN: TadB2 [Ralstonia solanacearum
UW551]
gi|83725447|gb|EAP72593.1| TRANSMEMBRANE PILUS ASSEMBLY PROTEIN: TadB2 [Ralstonia solanacearum
UW551]
Length = 308
Score = 49.9 bits (118), Expect = 5e-04, Method: Composition-based stats.
Identities = 31/188 (16%), Positives = 66/188 (35%), Gaps = 8/188 (4%)
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
L+ G + + V A++L V + ++ + + + P L
Sbjct: 87 LVFGPLAVIALVAWAVSSLLSAVTAILLYALVAAFL----FWSRTRRMKERLMQQLPGFL 142
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQ 247
D ++ + G ++ A + + PL + LT + A + +
Sbjct: 143 DGVVRLMSIGSAVPAAFQAAS---ANTEPPLRTCLALTTQLQRAGKDLDAAVLAVGQQYR 199
Query: 248 MDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFL 307
++ + + L + RYG + + R + E A S +L+ I+ L
Sbjct: 200 VNELVLLSSVLRLALRYGGRADIVMERTAAFMRDREQAQKELLALSAETRLSA-WILGLL 258
Query: 308 PVLILVII 315
PV++ II
Sbjct: 259 PVVVGGII 266
>gi|146351306|ref|YP_001210533.1| putative typeII /IV secretion system integral membrane protein,
TadC related [Arthrobacter nitroguajacolicus]
gi|146218870|emb|CAL09941.1| putative typeII /IV secretion system integral membrane protein,
TadC related [Arthrobacter nitroguajacolicus]
Length = 294
Score = 49.9 bits (118), Expect = 6e-04, Method: Composition-based stats.
Identities = 30/193 (15%), Positives = 65/193 (33%), Gaps = 7/193 (3%)
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
++ + W+FG L + A + +G + + + RA
Sbjct: 103 VLSAVFWLFGLPPLFP---AVPAIAAVPLGLGLAVLVDAGVKQQAVEAREEFSRAVATYF 159
Query: 188 DLLLICVESGISIDQALRRVAEDIGG-QSVPLSEEMLLTIAELSFLPNRQVAFENFYNRT 246
+L+ G AL A + +E+L + N A
Sbjct: 160 ELVAAERRRGSPAQHALSEAAGVADSWVFRRIRQELLRASLQSQMPWN---ALRELSEEI 216
Query: 247 QMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFF 306
+ +R+ + S ++ +SLR RS+ + + ++ ++TVPM +
Sbjct: 217 GVKELRDLADIMQLSGEEDAAVYESLRARGKSLRSQMVTDEHQEGNKQTERMTVPMTLLG 276
Query: 307 LPVLILVIIGPAI 319
+ ++I P +
Sbjct: 277 AVFMAILITAPLL 289
>gi|309778766|ref|ZP_07673539.1| type II secretion system protein [Ralstonia sp. 5_7_47FAA]
gi|308922474|gb|EFP68098.1| type II secretion system protein [Ralstonia sp. 5_7_47FAA]
Length = 308
Score = 49.9 bits (118), Expect = 6e-04, Method: Composition-based stats.
Identities = 39/271 (14%), Positives = 93/271 (34%), Gaps = 19/271 (7%)
Query: 57 KQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNIL 116
+ + +++++ S +R + + + + V +++ + A R+ +
Sbjct: 24 AEAVRRCEREASRSFVRAQTEQINARYQPNVEPVPASVPDSLNRAWQDALRRAGIEPSRR 83
Query: 117 LVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQ 176
V L+ P + + L + + L V V L I N +K
Sbjct: 84 FYVLLIGPALMIALAVWAMSSALSALTALALYVVIVVFL------------IWNRTRKIN 131
Query: 177 SSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQ 236
+ P LD ++ + G ++ A + + PL + +
Sbjct: 132 ERLLAQLPGFLDGVVRLMSIGSAVPAAFQAAS---ANTEQPLRNCLTAITQMQRAGKDLD 188
Query: 237 VAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGP 296
A + +++ + + L + RYG + + R + + E A S
Sbjct: 189 AAVLTVGQQYRVNELVLLSSVLRLALRYGGRADIVMERTAAFMRDRQQAQRELFALSAET 248
Query: 297 KLTVPMIIFFLPVL---ILVIIGPAILSIID 324
+L+ II LPV+ ++++ A + +
Sbjct: 249 RLSA-WIIGLLPVVVGGVIIMFNAAYIMSMW 278
>gi|317491687|ref|ZP_07950122.1| type II secretion system protein [Enterobacteriaceae bacterium
9_2_54FAA]
gi|316920121|gb|EFV41445.1| type II secretion system protein [Enterobacteriaceae bacterium
9_2_54FAA]
Length = 290
Score = 49.9 bits (118), Expect = 6e-04, Method: Composition-based stats.
Identities = 32/188 (17%), Positives = 67/188 (35%), Gaps = 11/188 (5%)
Query: 124 PIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAW 183
+ ++ +I + L Q V + I + + I + +R + +
Sbjct: 62 GMKGAMVALILLLVLLFLNANWLQFDVMFFLPITLMVMFIAQLRIGRSLHRRY--FEDRF 119
Query: 184 PDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFY 243
P+ L ++ V +G SI QAL R E G L L+ + + F + +
Sbjct: 120 PEILSVVNAAVSAGNSIHQALHRCGE---GIDGDLGVTFHRIDRRLNLGEDPERVFNDAW 176
Query: 244 NRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKA----ASLGPKL- 298
+ ++ S ++G + + L + + M K A A K+
Sbjct: 177 ENYRYREFYFFVVVMLVSLQHGGQLRTLMGRLSRIVNNSKNMARRKSAMTSEARTSAKIV 236
Query: 299 -TVPMIIF 305
++P++ F
Sbjct: 237 ASLPLLFF 244
>gi|291529647|emb|CBK95233.1| Bacterial type II secretion system protein F domain [Eubacterium
rectale M104/1]
Length = 288
Score = 49.9 bits (118), Expect = 6e-04, Method: Composition-based stats.
Identities = 37/225 (16%), Positives = 87/225 (38%), Gaps = 24/225 (10%)
Query: 108 RSEYSL--NILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPS 165
R++Y+L + ++ ++V+ + +++ G ++ + +GF P+
Sbjct: 74 RNDYALDASTFILEKIVIGGALALACLVFAPG--------LIWKLTGALAAFILGFMVPN 125
Query: 166 VWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQAL----RRVAE-DIGGQSVPLSE 220
I + +K +++ +L + ++G+ I +L R V + L+
Sbjct: 126 FMIYSKDKKDNEAMQDDIVSIYTILKLNAKAGVFISDSLVECQRSVTNGRLKAGLTELNN 185
Query: 221 EMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETR 280
+ LS + + E F R + + N T L QS R G I + L + +
Sbjct: 186 NI------LSRKLTLEDSVELFNARFNNEQIDNLTVILRQSLRTG-QIANMLDDVSKQIE 238
Query: 281 SERLMEAEKKAASL--GPKLTVPMIIFFLPVLILVIIGPAILSII 323
+ E++ + K+ + LI+ I G ++ ++
Sbjct: 239 DINKLRTEQEKIKMQRQTKMMNIAFFVGISALIIYITGYQLVELL 283
>gi|302864942|ref|YP_003833579.1| Type II secretion system F domain-containing protein
[Micromonospora aurantiaca ATCC 27029]
gi|302567801|gb|ADL44003.1| Type II secretion system F domain [Micromonospora aurantiaca ATCC
27029]
Length = 242
Score = 49.9 bits (118), Expect = 6e-04, Method: Composition-based stats.
Identities = 41/173 (23%), Positives = 78/173 (45%), Gaps = 10/173 (5%)
Query: 155 LIGYVGFCAPSVWISNL----VQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAED 210
+G + A + + ++R+ P A DLL + +G +D+++ VAE
Sbjct: 72 FLGLLAGAAADRLLRRIEPRAARERRLRETADLPLAADLLAAALRAGAPVDRSVLAVAEA 131
Query: 211 IGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGD 270
+GG PL++ + L + A+ + T + V A ++S G ++
Sbjct: 132 LGG---PLADRLGRVGRTLRLGGSPGEAWAHLEGVTGAEPV---AAAAVRSSNSGAALAR 185
Query: 271 SLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSII 323
+L L + R+ER AE A G + +P+ + FLP IL + P I++++
Sbjct: 186 ALTRLADDLRAERSTSAEAAARRAGVLIVLPLGLCFLPAFILAGLVPVIVAVL 238
>gi|317133365|ref|YP_004092679.1| hypothetical protein Ethha_2453 [Ethanoligenens harbinense YUAN-3]
gi|315471344|gb|ADU27948.1| hypothetical protein Ethha_2453 [Ethanoligenens harbinense YUAN-3]
Length = 307
Score = 49.9 bits (118), Expect = 6e-04, Method: Composition-based stats.
Identities = 45/237 (18%), Positives = 92/237 (38%), Gaps = 19/237 (8%)
Query: 96 ENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVIL 155
+ L+AAG +EY+ + + ++ I G+I F KL + F + A+I
Sbjct: 76 SRLQADLKAAGL-AEYTPERYTAMSVAFGVMVFIPGLILAFAGIKLGQNIFLIAATALIA 134
Query: 156 IGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD--LLLICVESGISIDQALRRVAEDIGG 213
+ A I + ++R+ I+ P D L + +G + + +
Sbjct: 135 CSVIVGIAKQREIRKIAKRRRGRIELEIPKMTDSVLQSLSKRNG---RADITTILREYQR 191
Query: 214 QS-VPLSEEMLLTIAELSFLPNRQVA--FENFYNRTQMDCVRNATQALIQSDRYGTSIGD 270
+ L +E+ +A++ N +V NR + + + LI G + +
Sbjct: 192 VAGPDLKKEIGYMLADIETSNNERVETILLRTENRLNSEIATSLIRGLI-GIYNGEDMRE 250
Query: 271 SLRVLVSETRSERLMEAEKKAASLGPKLTVP---------MIIFFLPVLILVIIGPA 318
L+ LV E +++ A + A +LT+P ++I L + + + P
Sbjct: 251 YLQGLVLEMNEQQIEFAARAARRRPNELTLPTWAVIGSMVLMICILILSTIFLHLPG 307
>gi|239929827|ref|ZP_04686780.1| integral membrane protein [Streptomyces ghanaensis ATCC 14672]
Length = 263
Score = 49.9 bits (118), Expect = 6e-04, Method: Composition-based stats.
Identities = 32/139 (23%), Positives = 59/139 (42%), Gaps = 6/139 (4%)
Query: 182 AWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFEN 241
P A DLL C+ +G A + V E +GG P+ E + AE+ A++
Sbjct: 120 QLPLAADLLSACIAAGAGPVTAAQAVGEALGG---PVGEALARGAAEVRLGGEPDAAWQR 176
Query: 242 FYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVP 301
+ + + L ++D G + + L +E R+E A +A ++ P
Sbjct: 177 LAS---VPGAAALARLLERADVSGLPLSTPVARLAAEARAEWARAATARARRAAVMVSAP 233
Query: 302 MIIFFLPVLILVIIGPAIL 320
+ + FLP + V + P ++
Sbjct: 234 VGLCFLPAFVAVGVLPVVI 252
>gi|253576052|ref|ZP_04853385.1| predicted protein [Paenibacillus sp. oral taxon 786 str. D14]
gi|251844627|gb|EES72642.1| predicted protein [Paenibacillus sp. oral taxon 786 str. D14]
Length = 285
Score = 49.9 bits (118), Expect = 6e-04, Method: Composition-based stats.
Identities = 37/184 (20%), Positives = 71/184 (38%), Gaps = 7/184 (3%)
Query: 146 FQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALR 205
+ A+ L V F A I+ ++RQ I R P + ++I +E+G S ++
Sbjct: 107 LPVLFLAIPLAVAVFFFAQLGEITKAYKRRQEEITRDLPQLISKMMIALETGKSFLTTIQ 166
Query: 206 RVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYG 265
R+ E G + + + A + + A + F T + +R+ A+ G
Sbjct: 167 RLEETSGPRMKKM---LARLNANIRIMK-LTDAVDLFAAETDVPVMRDFAAAVKIGVNSG 222
Query: 266 -TSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIID 324
+ + R RL ++ S K+ + I+ L VII A + I
Sbjct: 223 YGEAKKYFDSIKGDLRKLRLAALKEVTRSQPEKIKMLYILVALHAFAAVII--AFIDIFS 280
Query: 325 TMKD 328
+++
Sbjct: 281 QIQN 284
>gi|300697739|ref|YP_003748400.1| type II secretion system protein [Ralstonia solanacearum CFBP2957]
gi|299074463|emb|CBJ54013.1| Type II secretion system protein [Ralstonia solanacearum CFBP2957]
Length = 318
Score = 49.5 bits (117), Expect = 7e-04, Method: Composition-based stats.
Identities = 31/191 (16%), Positives = 64/191 (33%), Gaps = 8/191 (4%)
Query: 125 IIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWP 184
+ L G + + V A++L V + ++ + + P
Sbjct: 94 LYLLAFGPLAVIALVAWAVSGLLSAVTAILLYALVAAFL----FWSRTRRMNERLMQQLP 149
Query: 185 DALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYN 244
LD ++ + G ++ A + + PL + LT + A
Sbjct: 150 GFLDGVVRLMSIGSAVPAAFQAAS---ANTEPPLRTCLALTTQLQRAGKDLDAAVLAVGQ 206
Query: 245 RTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMII 304
+++ + + L + RYG + + R + E A S +L+ I+
Sbjct: 207 LYRVNELVLLSSVLRLALRYGGRADIVMERTAAFMRDREQAQKELLALSAETRLSA-WIL 265
Query: 305 FFLPVLILVII 315
LPV++ II
Sbjct: 266 GLLPVVVGGII 276
>gi|307721764|ref|YP_003892904.1| Flp pilus assembly protein TadB [Sulfurimonas autotrophica DSM
16294]
gi|306979857|gb|ADN09892.1| Flp pilus assembly protein TadB [Sulfurimonas autotrophica DSM
16294]
Length = 311
Score = 49.5 bits (117), Expect = 7e-04, Method: Composition-based stats.
Identities = 32/188 (17%), Positives = 62/188 (32%), Gaps = 17/188 (9%)
Query: 85 KKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEY 144
K + I + AG R P IF ++ + + F L
Sbjct: 55 DKHMQSKNTLKNQIQALMIQAGLR-------------FSPYIFALIFLAFCFLIGSLFTL 101
Query: 145 PFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQAL 204
G I I + + + +++Q R+ +A A+ +L+ +++GI +QAL
Sbjct: 102 FLLHWSGYFIGIPFGALIF-YMILQSVIQNRKKKFNKALAVAISVLVKMMKNGIGFEQAL 160
Query: 205 RRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRY 264
+ S + E + + + AF N +R A+
Sbjct: 161 SK--SVSVSGSKLFRDIFEKFFQEKNTIGEME-AFSNLNQFVHSKELRIFALAIKIGRES 217
Query: 265 GTSIGDSL 272
G ++L
Sbjct: 218 GGQFSNTL 225
>gi|323484185|ref|ZP_08089555.1| hypothetical protein HMPREF9474_01306 [Clostridium symbiosum
WAL-14163]
gi|323402627|gb|EGA94955.1| hypothetical protein HMPREF9474_01306 [Clostridium symbiosum
WAL-14163]
Length = 292
Score = 49.5 bits (117), Expect = 7e-04, Method: Composition-based stats.
Identities = 39/242 (16%), Positives = 77/242 (31%), Gaps = 21/242 (8%)
Query: 60 ITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVV 119
++ Q+ + + +L + ++ L + L AG + + +
Sbjct: 37 LSRKQQGTKNEKLLDVYVTKIAGWIAPYLRLDRLKRNKVQRALDIAGL--QLTPEVYTTR 94
Query: 120 RLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSI 179
V + I F L+ L V Y F + V+KR+ I
Sbjct: 95 AWVTAGAVGLCAIPMAFLIPLLVPILIGLAVALWFSTYYAAF--------DFVKKRRKLI 146
Query: 180 KRAWPDALDLLLICVESGISIDQ---ALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQ 236
+ P + G S++ L+ + E+ TIA++ N +
Sbjct: 147 EGEIPRF------ALTVGQSLENDRDVLKILTSYRRVAGKDFGAELDQTIADMKTG-NYE 199
Query: 237 VAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGP 296
A F R + + + LI R G +++ + R +K+AA
Sbjct: 200 NALIRFETRIGSPMLSDVIRGLIGVLR-GDDQRMYFKMITFDMRQIEQNNLKKEAAKRPK 258
Query: 297 KL 298
K+
Sbjct: 259 KI 260
>gi|23465096|ref|NP_695699.1| hypothetical protein BL0506 [Bifidobacterium longum NCC2705]
gi|189440157|ref|YP_001955238.1| Flp pilus assembly protein [Bifidobacterium longum DJO10A]
gi|239622703|ref|ZP_04665734.1| conserved hypothetical protein [Bifidobacterium longum subsp.
infantis CCUG 52486]
gi|23325710|gb|AAN24335.1| hypothetical membrane protein with unknown function
[Bifidobacterium longum NCC2705]
gi|189428592|gb|ACD98740.1| Flp pilus assembly protein [Bifidobacterium longum DJO10A]
gi|239514700|gb|EEQ54567.1| conserved hypothetical protein [Bifidobacterium longum subsp.
infantis CCUG 52486]
Length = 200
Score = 49.5 bits (117), Expect = 7e-04, Method: Composition-based stats.
Identities = 38/151 (25%), Positives = 60/151 (39%), Gaps = 15/151 (9%)
Query: 187 LDLLLICVESGISIDQALRRVAEDIGGQS--------------VPLSEEMLLTIAELSFL 232
L +L + + G SI +AL V + +GG VP ++ +A
Sbjct: 50 LRMLQVSLRQGSSIPRALDMVGKAVGGDCGARMSEVGSSLARGVPWADAWHAAMAVQHEG 109
Query: 233 PNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAA 292
+ +RTQ + AL S +G G L + + + E+ AA
Sbjct: 110 APADSSSGKRTSRTQ-RDLGLLQSALESSWTHGDMPGVRLESAIEQLDRDERAAIERNAA 168
Query: 293 SLGPKLTVPMIIFFLPVLILVIIGPAILSII 323
L KL +P + FLP +LV + PAI S +
Sbjct: 169 KLSVKLLMPTGLCFLPAFVLVGVIPAIASFM 199
>gi|229819119|ref|YP_002880645.1| type II secretion system protein [Beutenbergia cavernae DSM 12333]
gi|229565032|gb|ACQ78883.1| type II secretion system protein [Beutenbergia cavernae DSM 12333]
Length = 179
Score = 49.5 bits (117), Expect = 7e-04, Method: Composition-based stats.
Identities = 29/149 (19%), Positives = 64/149 (42%), Gaps = 8/149 (5%)
Query: 173 QKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFL 232
+ + +++ A +L+ +++G ++ AL + I G + L
Sbjct: 31 AQERRAVRVDAAVACELVAAVLDAGAAVPTALDALGRAIDGDD---GRALRSCGGALLLG 87
Query: 233 PNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAA 292
+ A+ R + +AL + G + G +LR R+ R A++ AA
Sbjct: 88 ASWSEAWSGVPGRWAIVE-----RALEPAWTDGVAPGPALRAAADGVRARRAELAKEAAA 142
Query: 293 SLGPKLTVPMIIFFLPVLILVIIGPAILS 321
LG +L +P+ + +LP +L+ + P +++
Sbjct: 143 RLGVRLVLPLGLCYLPAFVLLGLLPVVIA 171
>gi|322368727|ref|ZP_08043294.1| flagellar assembly protein J [Haladaptatus paucihalophilus DX253]
gi|320551458|gb|EFW93105.1| flagellar assembly protein J [Haladaptatus paucihalophilus DX253]
Length = 576
Score = 49.5 bits (117), Expect = 7e-04, Method: Composition-based stats.
Identities = 26/169 (15%), Positives = 62/169 (36%), Gaps = 8/169 (4%)
Query: 105 AGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAP 164
A + E + + + +V I+F + ++ +F D L V L+G +
Sbjct: 25 AYHQMEMPMVRYVGLVIVPSILFFFISLVVVFSVDLPF-----LVALPVPLLGALALTTA 79
Query: 165 SVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLL 224
++ L +R+ I+ + + + + + Q R ++E+ + L+ EM
Sbjct: 80 VIYPKLLRDRRRKQIEDRLHLFITHMTVLSTANMDRVQVFRILSEE--AEYKELALEMQR 137
Query: 225 TIAELS-FLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSL 272
+ + + + A + + + + L + G I D L
Sbjct: 138 IVQLVDTWNQSLDDALQIRAKKVPSKPLSDFFDRLAYTIGSGGEIQDFL 186
>gi|320531263|ref|ZP_08032242.1| type II secretion system F domain protein [Actinomyces sp. oral
taxon 171 str. F0337]
gi|320136530|gb|EFW28499.1| type II secretion system F domain protein [Actinomyces sp. oral
taxon 171 str. F0337]
Length = 283
Score = 49.5 bits (117), Expect = 7e-04, Method: Composition-based stats.
Identities = 28/141 (19%), Positives = 55/141 (39%), Gaps = 4/141 (2%)
Query: 152 AVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDI 211
+ + P + IS+ + R++ ++ WP+A+D L+ V +G+S+ +AL + E
Sbjct: 76 VALSFASIFTAVPFLIISSRARNRRTRLREVWPEAVDTLVSGVRAGMSLPEALTNLGERG 135
Query: 212 GGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRY-GTSIGD 270
P + + + + + R +AL + GT +G
Sbjct: 136 PEAVRP---QFRAFATDYAASARFDSSLDRLKARFADPVADRIVEALRLAHEVGGTDLGT 192
Query: 271 SLRVLVSETRSERLMEAEKKA 291
LR L R + E +A
Sbjct: 193 LLRSLSQMLREDMRTRGELEA 213
>gi|187926430|ref|YP_001892775.1| type II secretion system protein [Ralstonia pickettii 12J]
gi|241665917|ref|YP_002984276.1| type II secretion system protein [Ralstonia pickettii 12D]
gi|187728184|gb|ACD29348.1| type II secretion system protein [Ralstonia pickettii 12J]
gi|240867944|gb|ACS65604.1| type II secretion system protein [Ralstonia pickettii 12D]
Length = 308
Score = 49.5 bits (117), Expect = 7e-04, Method: Composition-based stats.
Identities = 30/192 (15%), Positives = 65/192 (33%), Gaps = 12/192 (6%)
Query: 120 RLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSI 179
R V +I L I + V+++ ++ + N +K +
Sbjct: 83 RFYVLLIGPALMITLAVWAVSSMLSALTALALYVVIVAFLFW--------NRTRKMNERL 134
Query: 180 KRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAF 239
+ P LD ++ + G ++ A + + PL + + A
Sbjct: 135 LQQLPGFLDGVVRLMSIGSAVPAAFQAAS---ANTEQPLRNCLTAITQMQRAGKDLDAAV 191
Query: 240 ENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLT 299
+ +++ + + L + RYG + + R + + E A S +L+
Sbjct: 192 LTVGRQYRVNELILLSSVLRLALRYGGRADIVMERTAAFMRDRQQAQRELFALSAETRLS 251
Query: 300 VPMIIFFLPVLI 311
II LPV++
Sbjct: 252 A-WIIGLLPVVV 262
>gi|303244718|ref|ZP_07331049.1| Type II secretion system F domain protein [Methanothermococcus
okinawensis IH1]
gi|302484932|gb|EFL47865.1| Type II secretion system F domain protein [Methanothermococcus
okinawensis IH1]
Length = 384
Score = 49.5 bits (117), Expect = 8e-04, Method: Composition-based stats.
Identities = 34/165 (20%), Positives = 69/165 (41%), Gaps = 12/165 (7%)
Query: 105 AGFRS-EYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCA 163
AG R + L+ V + V +I+ + G+ YD+ + Y V A ++ G
Sbjct: 143 AGIRDVKVYFLKLMFVSMGVGVIYFVNGV-----YDENILYGIINGVFASAILFIAGIFY 197
Query: 164 PSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEML 223
P I L+ R + L ++ + SG+S+ +A++ ++E+ + S E
Sbjct: 198 PK--IKLLLLSRGEIKIQILISILHMIS-SLNSGMSLQEAMKNISEN--PEYGIASFEFK 252
Query: 224 LTIAEL-SFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTS 267
I ++ + + + E RT++ ++ LI S G +
Sbjct: 253 NIIYDINRGGYSFKESLERAKIRTKIPLMKKLYAQLIISANKGGA 297
>gi|300779981|ref|ZP_07089837.1| conserved hypothetical protein [Corynebacterium genitalium ATCC
33030]
gi|300534091|gb|EFK55150.1| conserved hypothetical protein [Corynebacterium genitalium ATCC
33030]
Length = 225
Score = 49.5 bits (117), Expect = 8e-04, Method: Composition-based stats.
Identities = 28/174 (16%), Positives = 61/174 (35%), Gaps = 23/174 (13%)
Query: 169 SNLVQKRQSSIKRAWPDALDLLLICVESGISI----------------DQALRR---VAE 209
S ++++ K ++L C +G+ D+AL V +
Sbjct: 47 SRWGKQKKRWDKHRIASDIELFAACFRAGLPAAAAAAAVAESYQQGGQDEALNEGENVGD 106
Query: 210 DIG-GQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSI 268
GQ L + +A + A+ + + S G+++
Sbjct: 107 TGESGQLAQLGQLWRRVVAYSELGIEPERAW---AVMHGVPGCEELASTVTLSHASGSAV 163
Query: 269 GDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
DS + R++ +A A G +++P+ FFLP ++ + P ++ +
Sbjct: 164 ADSCDRIAESLRADAADDATAAAERAGVLISIPLAAFFLPAFFVLGLAPVVIGL 217
>gi|298345275|ref|YP_003717962.1| type II secretion system protein [Mobiluncus curtisii ATCC 43063]
gi|298235336|gb|ADI66468.1| type II secretion system protein [Mobiluncus curtisii ATCC 43063]
Length = 295
Score = 49.1 bits (116), Expect = 8e-04, Method: Composition-based stats.
Identities = 33/166 (19%), Positives = 59/166 (35%), Gaps = 5/166 (3%)
Query: 127 FLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDA 186
FL+L ++ L L V L G + P + + + + Q +AWP+
Sbjct: 63 FLVLSLLAGVSAGICLTVVTGL-VMVGWLAGLLAAYLPFLGLQSKLHSVQGQRGKAWPNL 121
Query: 187 LDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRT 246
+D L+ V +G+S+ + L VA L A+ N + +
Sbjct: 122 VDDLVSGVRAGLSLGETLLEVA---ARAPKSLRVPFAHFAADYRAGGNLDASLKILKREL 178
Query: 247 QMDCVRNATQALIQSDRYGTS-IGDSLRVLVSETRSERLMEAEKKA 291
+AL + + G + + L L + R+E E A
Sbjct: 179 ADPVGDRIVEALRLAAQVGGNDLVILLEDLGAMLRAEERTRGEVLA 224
>gi|296242113|ref|YP_003649600.1| type II secretion system F domain-containing protein [Thermosphaera
aggregans DSM 11486]
gi|296094697|gb|ADG90648.1| Type II secretion system F domain protein [Thermosphaera aggregans
DSM 11486]
Length = 581
Score = 49.1 bits (116), Expect = 8e-04, Method: Composition-based stats.
Identities = 40/215 (18%), Positives = 79/215 (36%), Gaps = 9/215 (4%)
Query: 108 RSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVW 167
RS L+ + L++ ++ L GI G + + + I + V + +
Sbjct: 31 RSNIHLHAEVYASLILFLLTLSAGIAAGVGVLVFF-LGYHVFIPFFIALPVVVYLIMIII 89
Query: 168 ISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRV--AEDIGGQSVPLSEEMLLT 225
S + R S+I +P + L I V SG+S A R+ I ++ L++ +L
Sbjct: 90 PSMVAGSRASAIDGEFPYTISYLSIMVMSGLSPYIAFERILKGSIIFQKTGELAQRFVLL 149
Query: 226 IAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSL----RVLVSETRS 281
+ AF +R VR I + + G + D L R L ++
Sbjct: 150 NK--ILGKDPLTAFAMLSDRNPSSRVRETLSGYISTVKAGGDVIDYLNKRARALFNDLLV 207
Query: 282 ERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIG 316
+ A++ L L + ++ ++ +
Sbjct: 208 SMKIIADRLGGLLESYLAIVLLTMISFTVLYFVTA 242
Score = 35.6 bits (81), Expect = 9.3, Method: Composition-based stats.
Identities = 27/165 (16%), Positives = 61/165 (36%), Gaps = 5/165 (3%)
Query: 152 AVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDI 211
+ + + PS+ + + R+ +I + L+ ++G+ ++++ ++
Sbjct: 351 IALSMALIVSIIPSLIYAEYIA-REYTIINGITRFIRDLVEVRKTGLPPEKSIIELSTR- 408
Query: 212 GGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDS 271
S+ + EL+ + + E + + + + L S G D
Sbjct: 409 --DYGVFSKYLKKISLELTLGVSLRKIIEELFKKIKPWRAKVLLFILTDSIEVGGGTVDV 466
Query: 272 LRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIG 316
L L S +EAEKK S+ + VP + L +V +
Sbjct: 467 LENLAWFAESIEAIEAEKK-RSMRTLMIVPYLGAVLTAFTIVFMA 510
>gi|33867074|ref|NP_898632.1| TadB-like protein [Rhodococcus erythropolis]
gi|33668908|gb|AAP73902.1| TadB-like protein [Rhodococcus erythropolis]
Length = 295
Score = 49.1 bits (116), Expect = 9e-04, Method: Composition-based stats.
Identities = 38/194 (19%), Positives = 69/194 (35%), Gaps = 14/194 (7%)
Query: 126 IFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPD 185
I L+ G++ + + L +G VI +G P + + + + A +
Sbjct: 49 ILLVAGVLVGGLTWMVSGWFIALPLGPVIFVG-----LP-FLLGKPAAEGEIARLNAMEE 102
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
+ L + G I+QA+ +A L+ E+ I L A F +
Sbjct: 103 WVRNLSGVLAVGTGIEQAI--IATH-KAMPEALTTEISRLIQRLRTNTPIIDALRGFADD 159
Query: 246 TQMDCVRNATQALIQSDR-YGTSIGDSL----RVLVSETRSERLMEAEKKAASLGPKLTV 300
+LIQS G+ + L R + + R+ R +EA +K + +
Sbjct: 160 LDDATGDLIVGSLIQSAAIRGSGLTAVLDRLSRSVAEDVRNRRAVEAARKGSRTTARWVT 219
Query: 301 PMIIFFLPVLILVI 314
+ I F L L
Sbjct: 220 IITIGFTVGLFLFT 233
>gi|315655695|ref|ZP_07908593.1| type II secretion system protein [Mobiluncus curtisii ATCC 51333]
gi|315489759|gb|EFU79386.1| type II secretion system protein [Mobiluncus curtisii ATCC 51333]
Length = 295
Score = 49.1 bits (116), Expect = 0.001, Method: Composition-based stats.
Identities = 33/166 (19%), Positives = 59/166 (35%), Gaps = 5/166 (3%)
Query: 127 FLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDA 186
FL+L ++ L L V L G + P + + + + Q +AWP+
Sbjct: 63 FLVLSLLAGVSAGICLTVVTGL-VMVGWLAGLLAAYLPFLGLQSKLHSVQGQRGKAWPNL 121
Query: 187 LDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRT 246
+D L+ V +G+S+ + L VA L A+ N + +
Sbjct: 122 VDDLVSGVRAGLSLGETLLEVA---ARAPKSLRVPFAHFAADYRAGGNLDASLKILKREL 178
Query: 247 QMDCVRNATQALIQSDRYGTS-IGDSLRVLVSETRSERLMEAEKKA 291
+AL + + G + + L L + R+E E A
Sbjct: 179 ADPVGDRIVEALRLAAQVGGNDLVILLEDLGAMLRAEERTRGEVLA 224
>gi|159040452|ref|YP_001539705.1| type II secretion system protein [Salinispora arenicola CNS-205]
gi|157919287|gb|ABW00715.1| type II secretion system protein [Salinispora arenicola CNS-205]
Length = 288
Score = 49.1 bits (116), Expect = 0.001, Method: Composition-based stats.
Identities = 28/186 (15%), Positives = 64/186 (34%), Gaps = 2/186 (1%)
Query: 125 IIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWP 184
I ++ I + P + V + + + + + ++ + A
Sbjct: 94 IGLASPTLLSITFAATGVGMPVAVPVLGSLGLALLCAWLAHRAVLTKAEAARAEFRAAVC 153
Query: 185 DALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYN 244
LDL+ + + + Q+L R AE G E L +A+L + +
Sbjct: 154 TYLDLVALQLSAAHGPVQSLERAAEVCDGWVFDRIRE-SLRLAQLQMHSPWDE-LRDLAD 211
Query: 245 RTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMII 304
R + + + + S G + ++LR R + + +A + +L +P +
Sbjct: 212 RIGIPELGDVGAIMRSSGSEGAQVHETLRSRADSLRDQIRTDNLARAEGVTGRLDIPGAL 271
Query: 305 FFLPVL 310
+L
Sbjct: 272 LVFVLL 277
>gi|293189315|ref|ZP_06608038.1| putative bacterial type II secretion system protein F domain
protein [Actinomyces odontolyticus F0309]
gi|292821778|gb|EFF80714.1| putative bacterial type II secretion system protein F domain
protein [Actinomyces odontolyticus F0309]
Length = 291
Score = 49.1 bits (116), Expect = 0.001, Method: Composition-based stats.
Identities = 29/166 (17%), Positives = 64/166 (38%), Gaps = 5/166 (3%)
Query: 127 FLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDA 186
+ L + ++ A+I+ V F P W+ + + +++ AWP+
Sbjct: 58 LIALSLGVAIVVALVILAVTGAWPVALIVSVGVAFM-PYAWVVSRLGAHAKTVRAAWPEV 116
Query: 187 LDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRT 246
+D ++ V +G ++ Q L +A++ VP+ + S ++A +
Sbjct: 117 IDAMVSGVRAGTALPQVLCDLADE---GPVPVRFAFEAFSRDYSANGRFELALDTMKETV 173
Query: 247 QMDCVRNATQALIQSDRYGTS-IGDSLRVLVSETRSERLMEAEKKA 291
+AL + G + + L+ L S R + + E +A
Sbjct: 174 ADPVADRIVEALRIARSVGGADLTRLLQDLASLLREDARVRGELEA 219
>gi|291517620|emb|CBK71236.1| Bacterial type II secretion system protein F domain
[Bifidobacterium longum subsp. longum F8]
Length = 200
Score = 49.1 bits (116), Expect = 0.001, Method: Composition-based stats.
Identities = 36/153 (23%), Positives = 57/153 (37%), Gaps = 19/153 (12%)
Query: 187 LDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFEN-FY-- 243
L + + + G SI +AL V + +GG E+ + L+ A+
Sbjct: 50 LRMSQVSLRQGSSIPRALDMVGKAVGGDCGARMSEVGRS---LTRGVPWADAWHAAMAVQ 106
Query: 244 -----------NRTQMD--CVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKK 290
RT + AL S +G G L + + + E+
Sbjct: 107 HEGTPADSSSGKRTSRTQRDLGLLQSALESSWTHGDMPGVRLESAIEQLDRDERAAIERN 166
Query: 291 AASLGPKLTVPMIIFFLPVLILVIIGPAILSII 323
AA L KL +P + FLP +LV + PAI S +
Sbjct: 167 AAKLSVKLLMPTGLCFLPAFVLVGVIPAIASFM 199
>gi|289191837|ref|YP_003457778.1| Type II secretion system F domain protein [Methanocaldococcus sp.
FS406-22]
gi|288938287|gb|ADC69042.1| Type II secretion system F domain protein [Methanocaldococcus sp.
FS406-22]
Length = 576
Score = 49.1 bits (116), Expect = 0.001, Method: Composition-based stats.
Identities = 26/167 (15%), Positives = 62/167 (37%), Gaps = 8/167 (4%)
Query: 106 GFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPS 165
G + ++ + + L ++ +I +++ G + ++ G + P
Sbjct: 305 GIKMKFKWKPIHFITLFFWMLSMIFFLLFFIGKSIFTLHRTDF-----LMFGILFLILPF 359
Query: 166 VWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLT 225
+ S ++ +R +P L+ L + V SG+ I +A++ A PL++ +
Sbjct: 360 ILTSYWRFIIENQKERYYPIFLNDLTMAVRSGMDIIRAMQVCA---RTNYGPLTKIIKKM 416
Query: 226 IAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSL 272
++S+ F + + + L + G I D L
Sbjct: 417 AIQMSWGRPVNEVFADLERTERSLIAKRIASILKECAVSGGDIKDIL 463
Score = 45.3 bits (106), Expect = 0.014, Method: Composition-based stats.
Identities = 39/238 (16%), Positives = 82/238 (34%), Gaps = 14/238 (5%)
Query: 93 LVDENIVNKLRAAGFR--SEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRV 150
+ DE L AG S L ++ + ++V I IL +I + Y +
Sbjct: 21 IEDEKFDEILLKAGINAVSSTYLPVVFLTSIIVGFIMFILFLILFNIF-----YAIFALL 75
Query: 151 GAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAED 210
G V + ++G P + L +++ SI P A + + I + + ++++
Sbjct: 76 GGVFVTIFLGVLYPYI----LAEEKAKSIDENLPYAFAFISALSSANIPVVEIFSSLSKE 131
Query: 211 IGGQSVPLSEEMLLTIAELS-FLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIG 269
+S+E + + F + F T + ++ S G +
Sbjct: 132 --DIYGGMSKEAKEIVKDTKVFNYDIITTFLRRARITPSKKLSAVYYNIVASLIVGAEMK 189
Query: 270 DSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
+ ER +E + + +I + L +V+ P SI ++
Sbjct: 190 TIFYEIYERLMEERKLELLEAIEKVEILSEFYVIACGMIPLFVVMTVPVASSISAILQ 247
>gi|238922469|ref|YP_002935982.1| hypothetical protein EUBREC_0043 [Eubacterium rectale ATCC 33656]
gi|238874141|gb|ACR73848.1| Hypothetical protein EUBREC_0043 [Eubacterium rectale ATCC 33656]
Length = 258
Score = 49.1 bits (116), Expect = 0.001, Method: Composition-based stats.
Identities = 26/185 (14%), Positives = 68/185 (36%), Gaps = 23/185 (12%)
Query: 146 FQLRVGAVILIGYVGFCAPSVWISNLV--------------QKRQSSIKRAWPDALDLLL 191
F + A ++I Y+ + +P V I+ ++++ + + + L +L
Sbjct: 28 FIKSMAATVIIAYLFYDSPIVVIAFPAVFAYCAKLCRQEGVRRQKEKLNEEFMNVLKVLS 87
Query: 192 ICVESGISIDQALRRVAEDIG---GQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
+ +G S++ A + +++ G + E+ ++ + F +R+ +
Sbjct: 88 SNMLAGYSVENAWQEAEKEMELMYGNDSLMLSEIREMNRQIKMNQTFEAVLSEFAHRSGL 147
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSE----RLMEAEKKAASLGPKLT--VPM 302
+ + N + + R G D + ++ R +E A L K +P+
Sbjct: 148 EDIVNFSDIFSFAKRSGGRFVDIIESTTYRMWTKYDTNRQIEVAVSAKRLEQKTMNYIPI 207
Query: 303 IIFFL 307
+
Sbjct: 208 FLLAF 212
>gi|327400834|ref|YP_004341673.1| Type II secretion system F domain-containing protein [Archaeoglobus
veneficus SNP6]
gi|327316342|gb|AEA46958.1| Type II secretion system F domain protein [Archaeoglobus veneficus
SNP6]
Length = 635
Score = 49.1 bits (116), Expect = 0.001, Method: Composition-based stats.
Identities = 25/184 (13%), Positives = 67/184 (36%), Gaps = 10/184 (5%)
Query: 72 LRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILG 131
L + R +K+ + I+ +++++ + R+V+ I +++
Sbjct: 329 LIAEEDIFARKVEQKMGTYKVRKFRKILKRIKSSLLHPFEDAIYTIGFRIVLFYIAVLVI 388
Query: 132 IIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLL 191
++ L + + I + F L ++ I++ P+ L
Sbjct: 389 LVTFIASRFLSLRELSIVTLSTAAIPIILFI-------ELRERTVRQIEKRIPEIFKELA 441
Query: 192 ICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCV 251
I E+G+SI +AL+ ++ + +S+E+ + + + A R + + +
Sbjct: 442 ILNEAGLSIIEALKVLST---IELGVISKEINIIRRRIEWGEPVTKALRLLELRVRSEII 498
Query: 252 RNAT 255
Sbjct: 499 AKVI 502
Score = 45.3 bits (106), Expect = 0.013, Method: Composition-based stats.
Identities = 25/140 (17%), Positives = 52/140 (37%), Gaps = 6/140 (4%)
Query: 149 RVGAVILIGYVGFCAPSVWI----SNLVQKRQSSIKRAWPDALDLLLICVESGISIDQAL 204
+ V++ G V + I S + +R++ I P A++++ GI +
Sbjct: 109 TILWVLISGVVAYKLVEYLILSYPSFISSRRRNEIDIYLPHAVNMMYGMAAGGIGTYDMI 168
Query: 205 RRVAEDIGGQSVPLSEEMLLTIAELSFLP-NRQVAFENFYNRTQMDCVRNATQALIQSDR 263
+ VA + LS+E I + A + + T + + + LI +
Sbjct: 169 KSVA-EAKFMFGELSKEFGTIIQLTDVFKEDLLSAMRHVRDTTPSEKLSSFLDDLIFIIK 227
Query: 264 YGTSIGDSLRVLVSETRSER 283
G ++ L+ E E+
Sbjct: 228 GGGNLSAFLKNKSDEFFEEQ 247
>gi|126459955|ref|YP_001056233.1| type II secretion system protein [Pyrobaculum calidifontis JCM
11548]
gi|126249676|gb|ABO08767.1| type II secretion system protein [Pyrobaculum calidifontis JCM
11548]
Length = 261
Score = 49.1 bits (116), Expect = 0.001, Method: Composition-based stats.
Identities = 31/206 (15%), Positives = 73/206 (35%), Gaps = 3/206 (1%)
Query: 115 ILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQK 174
R + ++ + L G L + ++ G + F + +LV
Sbjct: 14 AFSYRRYLAALVLIPLASGAAGGVAALFLLGPVAALAVGLMAGLLAFAGVVAYPLHLVSA 73
Query: 175 RQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAE-LSFLP 233
R+S + + L ++L +G+ + + + R+AE ++ E L E +
Sbjct: 74 RRSHFENNFVYTLAVMLPLFAAGVPLGRVIARLAE--VEADKYIAREFALVTREVVVMGA 131
Query: 234 NRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAAS 293
A + R R L ++ R + + L + + ++A+ S
Sbjct: 132 TPTEALLHSAERVPSQAYRETVNLLAKASRVTERVDEVLLARLEWMLRGKQVKAQSLVRS 191
Query: 294 LGPKLTVPMIIFFLPVLILVIIGPAI 319
L + ++ L +++ I+ A+
Sbjct: 192 LALLFEIYVVAAMLLPILVAILALAL 217
>gi|119719362|ref|YP_919857.1| type II secretion system protein [Thermofilum pendens Hrk 5]
gi|119524482|gb|ABL77854.1| type II secretion system protein [Thermofilum pendens Hrk 5]
Length = 604
Score = 49.1 bits (116), Expect = 0.001, Method: Composition-based stats.
Identities = 34/218 (15%), Positives = 77/218 (35%), Gaps = 9/218 (4%)
Query: 113 LNILLVVRLVVPIIFLILGIIWI----FGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWI 168
+ L ++ LV+ +F + +I + G +L F + + + +G P + +
Sbjct: 48 VVFLSIIALVLGFVFDVPIVILLSRMGVGLGGVLATSFSVPLMLAGAVFGLGLVYPKIKL 107
Query: 169 SNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAE 228
SN R S P + + GIS + R+A+ + +E + +
Sbjct: 108 SN----RTSRFDLEVPYLSVYITVMATGGISPYTSFERLAKAPKVLFQEIKKEAMYFFLK 163
Query: 229 LS-FLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEA 287
+ + A E+ R + + + R G + L+ ER+ +
Sbjct: 164 VKGMGQDPLSAIEDSAKRVPHNGYKQLMLGYAATLRAGGDVVHYLQRQTEVMLRERVSQM 223
Query: 288 EKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDT 325
+ +G + M I L + L ++ +++
Sbjct: 224 KTIGERIGALMESYMAIVLLTSMTLYVLYVVNMALAQA 261
Score = 37.2 bits (85), Expect = 3.2, Method: Composition-based stats.
Identities = 35/215 (16%), Positives = 81/215 (37%), Gaps = 15/215 (6%)
Query: 112 SLNILLVVRLVVPIIFLILG-----------IIWIFGYDKLLEYPFQLRVGAVILIGYVG 160
+ I L V +V+P + + +LL G ++I
Sbjct: 315 PITIFLFVAMVLPFAVAPPASTVLRSVFSPFVGAVLLLTRLLGLGKGYESGVGMIISLTL 374
Query: 161 FCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSE 220
P++ + + S I+ L L+ ++G++ ++ + + + G+ P
Sbjct: 375 GLLPAMIVETRSTLKFSGIQYGLTRFLRDLVEVRKTGMAPEKCIINLKDRDYGKFTPY-- 432
Query: 221 EMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETR 280
+ ++ + + FE F + + L++S G +L L S
Sbjct: 433 -LRDIAKQVGWGVSLHTIFERFSKGMKNWFALISMFLLVESIEVGGGTPQTLEALASYAE 491
Query: 281 SERLMEAEKKAASLGPKLTVPMIIFFLPVLILVII 315
+ +E EK+AA L P + +P + + ++++I+
Sbjct: 492 TLEQVEKEKRAA-LRPLMLMPYVGALIITVVVLIL 525
>gi|297161946|gb|ADI11658.1| type II secretion system protein [Streptomyces bingchenggensis
BCW-1]
Length = 299
Score = 49.1 bits (116), Expect = 0.001, Method: Composition-based stats.
Identities = 32/191 (16%), Positives = 69/191 (36%), Gaps = 4/191 (2%)
Query: 113 LNILLVVRLVVPIIFLIL--GIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISN 170
++ L + L+L + + +E + + + + V F P + +
Sbjct: 87 VDKHLAGKATCAAAGLLLPWAATVLVRFGAGVEAGWWMPLAGSLATAVVLFFVPDMAVRK 146
Query: 171 LVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELS 230
+R+ ++ LDL I + G + QAL A+ G + L +A+L+
Sbjct: 147 KAAERRRQMRHTLTLILDLTAISLAGGAGVQQALADAAQAPQGWAAAKLRH-ALHVAQLT 205
Query: 231 FLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKK 290
Q + ++ + L + G + SL R +L EA+
Sbjct: 206 RTSPWQH-LADLGRHLKVSDLSELAATLNLAGAEGAKVRASLAAKARAMRRRQLSEADGA 264
Query: 291 AASLGPKLTVP 301
A + ++++P
Sbjct: 265 AQAATEQMSLP 275
>gi|154499692|ref|ZP_02037730.1| hypothetical protein BACCAP_03349 [Bacteroides capillosus ATCC
29799]
gi|150271290|gb|EDM98547.1| hypothetical protein BACCAP_03349 [Bacteroides capillosus ATCC
29799]
Length = 292
Score = 49.1 bits (116), Expect = 0.001, Method: Composition-based stats.
Identities = 39/250 (15%), Positives = 81/250 (32%), Gaps = 21/250 (8%)
Query: 52 REILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEY 111
++ R + Q+ + +L + + L + L AG E
Sbjct: 29 KKTSRMMMLARKQQGVKAEKLLDVYITKIAGLIAPYLKLDKLKRNKLQRALDIAGL--EL 86
Query: 112 SLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNL 171
+ I V + I+ +F L V +I + + + + +
Sbjct: 87 TPEIYTARAWVTAGAVGLCSILMVFLVP--------LMVPVLIGLAVALWFSTYYSVFDF 138
Query: 172 VQKRQSSIKRAWPDALDLLLICVESGISIDQ---ALRRVAEDIGGQSVPLSEEMLLTIAE 228
V+KR+ I+ P + G +++ L+ + E+ TIA+
Sbjct: 139 VKKRRKLIESEIPRF------ALTIGQNLENDRDVLKILTSYRRVAGKDFGAELDQTIAD 192
Query: 229 LSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAE 288
+ N + A F R + + + LI R G +++ + R +
Sbjct: 193 MKTG-NYENALIRFETRIGSPMLSDVIRGLIGVLR-GDDQRMYFKMICFDMRQIEQNNLK 250
Query: 289 KKAASLGPKL 298
K+AA K+
Sbjct: 251 KEAAKRPKKI 260
>gi|226309740|ref|YP_002769634.1| hypothetical protein BBR47_01530 [Brevibacillus brevis NBRC 100599]
gi|226092688|dbj|BAH41130.1| hypothetical membrane protein [Brevibacillus brevis NBRC 100599]
Length = 279
Score = 49.1 bits (116), Expect = 0.001, Method: Composition-based stats.
Identities = 34/244 (13%), Positives = 87/244 (35%), Gaps = 23/244 (9%)
Query: 78 KSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFG 137
+ + L D+ L AG + + ++L+ + IL ++W+
Sbjct: 41 MWWEKWEQALKPD---EDDKWEQLLSRAGRPFGWGKPEWVFLQLLTGSMVCILVLMWV-V 96
Query: 138 YDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESG 197
++ +P + ++ L + P + + R+ + ++ + +E+
Sbjct: 97 VSRVESFP----LLSMCLASAGSYMLPYMGLKTWANHREDMLSTDIARFINRYVTLLENQ 152
Query: 198 ISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQA 257
+ I A+ + A +E + T++E + + A E+F + +D +
Sbjct: 153 VPIYNAMVKAARPTRKL-----KEYIPTLSEWN--RDPNEALESFKRKIGVDDGIILVSS 205
Query: 258 LIQSDRYG-TSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVL---ILV 313
+ + + +++ + R+ KK SLG + + P +LV
Sbjct: 206 MRTIETLSEGQVSATMQRMEWAVDHRRMFRHRKKIKSLG----IGYTVIVYPAFYMGLLV 261
Query: 314 IIGP 317
+ P
Sbjct: 262 AMFP 265
>gi|228943035|ref|ZP_04105536.1| Hypothetical membrane protein [Bacillus thuringiensis serovar
berliner ATCC 10792]
gi|228955917|ref|ZP_04117854.1| Hypothetical membrane protein [Bacillus thuringiensis serovar
kurstaki str. T03a001]
gi|228976632|ref|ZP_04137075.1| Hypothetical membrane protein [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228783101|gb|EEM31237.1| Hypothetical membrane protein [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228803744|gb|EEM50426.1| Hypothetical membrane protein [Bacillus thuringiensis serovar
kurstaki str. T03a001]
gi|228816620|gb|EEM62744.1| Hypothetical membrane protein [Bacillus thuringiensis serovar
berliner ATCC 10792]
Length = 297
Score = 49.1 bits (116), Expect = 0.001, Method: Composition-based stats.
Identities = 48/278 (17%), Positives = 102/278 (36%), Gaps = 12/278 (4%)
Query: 51 EREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSE 110
ER+ ++ QI S+ K S + R ++ + KL I + + + S
Sbjct: 26 ERQKSKRFQIYSIVKKSKVANKRQPILYTMLYPILKLKKNWISQEREKELEKKLKKVNSS 85
Query: 111 YSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISN 170
+ ++ +L II ++ IF L F L ++ +GF +++
Sbjct: 86 LTPMEFIISKLTFSIINFLVIASLIFYVPDLKIVIFPL----ALVFAVMGFYVKESKLNS 141
Query: 171 LVQKRQSSIKRAWPDALDLLLICVESG-ISIDQALRRVAEDIGGQSVPLSEEMLLTIAEL 229
V+ ++ ++ P+ ++ + G + +A +R E PL + + IA++
Sbjct: 142 DVKAKKLRLELELPEY--MISLAYMIGKYTAYEATKRSIEYASDNLRPLVKNL---IAQI 196
Query: 230 SFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIG-DSLRVLVSETRSERLMEAE 288
P + F + + +L Q+ S + + + R R E
Sbjct: 197 ELDPGDFEPYLEFARQLDIPEAYQFMVSLQQAMVMDESRSREIINNQIKLMRRLRAESYE 256
Query: 289 KKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
AS + +I +I+ +IG + SI +
Sbjct: 257 TLVASRPG-MVFKYLISTYLCIIVFVIGFSFTSIYEKF 293
>gi|210629925|ref|ZP_03296172.1| hypothetical protein COLSTE_00055 [Collinsella stercoris DSM 13279]
gi|210160742|gb|EEA91713.1| hypothetical protein COLSTE_00055 [Collinsella stercoris DSM 13279]
Length = 254
Score = 49.1 bits (116), Expect = 0.001, Method: Composition-based stats.
Identities = 24/133 (18%), Positives = 50/133 (37%), Gaps = 4/133 (3%)
Query: 183 WPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENF 242
P+A L + SG+S+ QA++ V G P+ E L A ++ + A +
Sbjct: 84 MPEAFGALAFSLGSGLSLAQAMQYVG---GRSEEPVRTEFLHASALMTCGVSSVDALDEL 140
Query: 243 YNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPM 302
R + AL S + G S+ L + + + +++ +
Sbjct: 141 VTRLNAPALDLVVLALKVSRKTGASLTGLLSEAAGLVGERIELARNLEVKTAQVRMSARL 200
Query: 303 IIFFLPVLILVII 315
+ PV+++ +
Sbjct: 201 VAGM-PVIMVGFL 212
>gi|302539258|ref|ZP_07291600.1| integral membrane protein [Streptomyces sp. C]
gi|302448153|gb|EFL19969.1| integral membrane protein [Streptomyces sp. C]
Length = 296
Score = 48.7 bits (115), Expect = 0.001, Method: Composition-based stats.
Identities = 34/218 (15%), Positives = 72/218 (33%), Gaps = 16/218 (7%)
Query: 99 VNKLRAAGFRSEYSLNILLVVRLVVP------IIFLILGIIWIFGYDKLLEY-----PFQ 147
+ L A G R + L ++R+ +F + G++ LL PF
Sbjct: 63 IRLLSAFGERITLPVRDLNLLRISPAEHLGKRFLFALYGLVLPQLAGALLSMLGVGLPFV 122
Query: 148 LRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRV 207
+ A + +G + + P + + ++ A LD + + + QAL
Sbjct: 123 MPAAAGLGLGALFWLWPGQEVKKEAAAARLVVRHAAASYLDRVALARIANSGAAQALTDT 182
Query: 208 AEDIGGQSVPLSEEMLLTIAELS-FLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGT 266
A+ + E M E A + + + L + G
Sbjct: 183 AD---VGDGWIFERMRQAFYEADLAGVTVWDALKQLGEELDIPELTRPADTLALAGD-GA 238
Query: 267 SIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMII 304
++ +L+ + R L +A+ +A + +P+
Sbjct: 239 AVYTTLQAQARQLRVAILADAKAQANEASTSMVLPVTF 276
>gi|302387179|ref|YP_003823001.1| hypothetical protein Closa_2837 [Clostridium saccharolyticum WM1]
gi|302197807|gb|ADL05378.1| conserved hypothetical protein [Clostridium saccharolyticum WM1]
Length = 290
Score = 48.7 bits (115), Expect = 0.001, Method: Composition-based stats.
Identities = 26/160 (16%), Positives = 62/160 (38%), Gaps = 12/160 (7%)
Query: 171 LVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELS 230
+ +++ I+ P + + +++ + L + E+ + A++
Sbjct: 137 KLSAKRAKIESELPRFVATITQELKASRDVLGMLE---NYKKNAGEEFAVELDILTADMR 193
Query: 231 FLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKK 290
+ + A F R + + T+ LI R G ++L + + L + +
Sbjct: 194 S-SSYEAALTRFEARINSPMLSDLTRGLIGVLR-GDDGAMYFQMLAHDMKQLELQRLKAQ 251
Query: 291 AASLGPKL---TVPMIIFFLPVLILVIIGPAILSIIDTMK 327
A + PK+ + M++ FL I VI+ I+ ++K
Sbjct: 252 AMKIPPKIRVFSFIMLMCFLLTYIAVIVF----EILRSLK 287
>gi|312133502|ref|YP_004000841.1| tadc [Bifidobacterium longum subsp. longum BBMN68]
gi|317483638|ref|ZP_07942614.1| tadC protein [Bifidobacterium sp. 12_1_47BFAA]
gi|311772745|gb|ADQ02233.1| TadC [Bifidobacterium longum subsp. longum BBMN68]
gi|316914916|gb|EFV36362.1| tadC protein [Bifidobacterium sp. 12_1_47BFAA]
Length = 200
Score = 48.7 bits (115), Expect = 0.001, Method: Composition-based stats.
Identities = 36/153 (23%), Positives = 57/153 (37%), Gaps = 19/153 (12%)
Query: 187 LDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFEN-FY-- 243
L + + + G SI +AL V + +GG E+ + L+ A+
Sbjct: 50 LRMSQVSLRQGSSIPRALDMVGKAVGGDCGARMSEVGRS---LTRGVPWADAWHAAMAVQ 106
Query: 244 -----------NRTQMD--CVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKK 290
RT + AL S +G G L + + + E+
Sbjct: 107 HEGAPADSSSGKRTSRTQRDLGLLQSALESSWTHGDMPGVRLESAIEQLDRDERAAIERN 166
Query: 291 AASLGPKLTVPMIIFFLPVLILVIIGPAILSII 323
AA L KL +P + FLP +LV + PAI S +
Sbjct: 167 AAKLSVKLLMPTGLCFLPAFVLVGVIPAIASFM 199
>gi|158320934|ref|YP_001513441.1| hypothetical protein Clos_1905 [Alkaliphilus oremlandii OhILAs]
gi|158141133|gb|ABW19445.1| hypothetical protein Clos_1905 [Alkaliphilus oremlandii OhILAs]
Length = 281
Score = 48.7 bits (115), Expect = 0.001, Method: Composition-based stats.
Identities = 30/188 (15%), Positives = 67/188 (35%), Gaps = 10/188 (5%)
Query: 140 KLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGIS 199
E L +I++ + + I + R++ I+ + D++ + G S
Sbjct: 100 GFYEASQGLIPAMLIIVAVL-----NAAIIKKAKDRKNKIRLELCNIQDVMYFQNKIGTS 154
Query: 200 IDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALI 259
D L AE PL E + A + + + EN + + +++ + L
Sbjct: 155 EDIILTYAAEIAKD---PLKEPLEYLAAAPKIKKSVEDSLENLRKVSDVVELQSFSFILQ 211
Query: 260 QSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAI 319
Q G S+ ++ + + + + + K KL V + IL++ P
Sbjct: 212 QRQETG-SVAENHKAQSQMMKRNKRLRRKIKRQYKRTKLIVA-SLMLFTCYILLLTVPLF 269
Query: 320 LSIIDTMK 327
+ ++
Sbjct: 270 AEALRSLN 277
>gi|297171607|gb|ADI22603.1| type II secretory pathway, component PulF [uncultured
verrucomicrobium HF0500_16O23]
Length = 417
Score = 48.7 bits (115), Expect = 0.001, Method: Composition-based stats.
Identities = 26/164 (15%), Positives = 59/164 (35%), Gaps = 12/164 (7%)
Query: 168 ISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAE-DIGGQSVPLSEEMLLTI 226
+ ++R+ + + L +++G+ + AL + D G + ++ +
Sbjct: 64 VRRFGRRRKKPKLQDLANFTRQLANLLKAGMPLTGALNSMTSLDSDGIPKSVCAQL---L 120
Query: 227 AELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLME 286
A++ V+ F + ++++ S+ + L+ L ER E
Sbjct: 121 ADVREGRTLSVSMGKFPEIFPDMYLN-----MVKAGESSGSMVEVLKRLADHY--ERFAE 173
Query: 287 AEKKAASLGPKLTVPMII-FFLPVLILVIIGPAILSIIDTMKDH 329
+K S M + F L + + I P ++I MK
Sbjct: 174 VRQKIISALVYPVFVMGLGFLLIFVFMSYILPKFMTIFKGMKVQ 217
>gi|327310806|ref|YP_004337703.1| type II secretion system protein [Thermoproteus uzoniensis 768-20]
gi|326947285|gb|AEA12391.1| type II secretion system protein [Thermoproteus uzoniensis 768-20]
Length = 232
Score = 48.7 bits (115), Expect = 0.001, Method: Composition-based stats.
Identities = 28/148 (18%), Positives = 60/148 (40%), Gaps = 3/148 (2%)
Query: 170 NLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAEL 229
+L+ R++ + +P L +LL + +G+ + +A+ R+AE ++ E+ L + ++
Sbjct: 39 HLISARRTHFENNFPYTLGVLLPLLTAGVPLGRAVARLAE--VEDDKYIARELSLVVRDM 96
Query: 230 -SFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAE 288
+ A + R R L +S R + L + ++ M A
Sbjct: 97 VVMGSSPIDALVHSAERVPSQNYRETVSVLARSSRITERLDAVLMARLDWMLRQKQMRAA 156
Query: 289 KKAASLGPKLTVPMIIFFLPVLILVIIG 316
S+ + +I L ++L II
Sbjct: 157 SLVRSIAVLFEIYVIAAQLLPILLFIIA 184
>gi|256374433|ref|YP_003098093.1| type II secretion system protein [Actinosynnema mirum DSM 43827]
gi|255918736|gb|ACU34247.1| type II secretion system protein [Actinosynnema mirum DSM 43827]
Length = 185
Score = 48.7 bits (115), Expect = 0.001, Method: Composition-based stats.
Identities = 28/157 (17%), Positives = 59/157 (37%), Gaps = 6/157 (3%)
Query: 171 LVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELS 230
KR A + DL + SG+ + AL V + G +E + L+
Sbjct: 34 RRAKRSPPDPLALAETWDLFAAALRSGLPVPSALHAV---LPGTPPGPAERLGQVRDLLA 90
Query: 231 FLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKK 290
+ A++ ++ ++ R G ++ D + L + R+ +AE +
Sbjct: 91 LGADPATAWD---PALDHPATAPLARSARRTARSGAALADQVADLAARLRASAADDAESR 147
Query: 291 AASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
A + P+ + FLP + + + P ++ I +
Sbjct: 148 AQRAAVLVAGPLSLCFLPAFLCLGVAPVLIGIASGLN 184
>gi|257413705|ref|ZP_05591766.1| conserved hypothetical protein [Roseburia intestinalis L1-82]
gi|257202608|gb|EEV00893.1| conserved hypothetical protein [Roseburia intestinalis L1-82]
Length = 122
Score = 48.7 bits (115), Expect = 0.001, Method: Composition-based stats.
Identities = 22/105 (20%), Positives = 43/105 (40%), Gaps = 5/105 (4%)
Query: 221 EMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETR 280
E+ + A++ + + A F R + + + LI R G ++L + +
Sbjct: 16 ELDIVCADMRS-SSYEAALTRFEARLNSPQLSDVVRGLIGVLR-GDDGAVYFQMLTHDFK 73
Query: 281 SERLMEAEKKAASLGPKL---TVPMIIFFLPVLILVIIGPAILSI 322
L + KAA + PK+ + M++ FL +I I S+
Sbjct: 74 QAELQRLKAKAAKIPPKIRVFSFAMLLCFLATYFAIIGYEIIKSM 118
>gi|254389724|ref|ZP_05004949.1| integral membrane protein [Streptomyces clavuligerus ATCC 27064]
gi|197703436|gb|EDY49248.1| integral membrane protein [Streptomyces clavuligerus ATCC 27064]
Length = 184
Score = 48.7 bits (115), Expect = 0.001, Method: Composition-based stats.
Identities = 24/164 (14%), Positives = 59/164 (35%), Gaps = 5/164 (3%)
Query: 163 APSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGG-QSVPLSEE 221
P + + + + + A L L+ + + + QAL++ AE G + +
Sbjct: 25 LPDLQLKQQAVEAKEDFRHAVKAYLRLVQLERAADAAPTQALKKAAEVGEGWVFAKIRDT 84
Query: 222 MLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRS 281
+ E + + + + + + G ++GD+L
Sbjct: 85 ITRAELE---GISPWEGLKRLSIELDVPELGAPADIIAIAGEEGAAVGDTLGAQAKSLSG 141
Query: 282 ERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDT 325
+ A+ +A K+ +P+ + L + + I PA+ I+ +
Sbjct: 142 ALVTSAKAQANMASEKMVMPVAMLVLIMT-VYIGYPALSRIMAS 184
>gi|257069699|ref|YP_003155954.1| Flp pilus assembly protein TadB [Brachybacterium faecium DSM 4810]
gi|256560517|gb|ACU86364.1| Flp pilus assembly protein TadB [Brachybacterium faecium DSM 4810]
Length = 361
Score = 48.7 bits (115), Expect = 0.001, Method: Composition-based stats.
Identities = 17/83 (20%), Positives = 35/83 (42%)
Query: 241 NFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV 300
R + ++ + ++ G + LR + R R + E AA L +L +
Sbjct: 268 ALAGRALPAELSALARSAVLAEGTGADLARVLRSAARDLRRGRARDVEVLAAQLAVRLVL 327
Query: 301 PMIIFFLPVLILVIIGPAILSII 323
P + LP + + I P ++S++
Sbjct: 328 PTGLALLPAFVALGIIPTVMSLL 350
>gi|213691075|ref|YP_002321661.1| conserved hypothetical membrane protein with unknown function
[Bifidobacterium longum subsp. infantis ATCC 15697]
gi|213522536|gb|ACJ51283.1| conserved hypothetical membrane protein with unknown function
[Bifidobacterium longum subsp. infantis ATCC 15697]
Length = 200
Score = 48.7 bits (115), Expect = 0.001, Method: Composition-based stats.
Identities = 35/153 (22%), Positives = 55/153 (35%), Gaps = 19/153 (12%)
Query: 187 LDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFEN-FY-- 243
L +L + + G SI +AL V + +G M + L+ A+
Sbjct: 50 LRMLQVSLRQGSSIPRALDMVGKAVGDDCGA---RMSEVGSSLTRGVPWADAWHAAMAVQ 106
Query: 244 -------------NRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKK 290
T + AL S +G G L + + + E+
Sbjct: 107 HEGAPADSPSGEDTNTTQRDLGLLQSALESSWTHGDMPGVRLESAIEQLDRDERAAIERN 166
Query: 291 AASLGPKLTVPMIIFFLPVLILVIIGPAILSII 323
AA L KL +P + FLP +LV + PAI S +
Sbjct: 167 AAKLSVKLLMPTGLCFLPAFVLVGVIPAIASFM 199
>gi|307352531|ref|YP_003893582.1| type II secretion system F domain-containing protein [Methanoplanus
petrolearius DSM 11571]
gi|307155764|gb|ADN35144.1| Type II secretion system F domain protein [Methanoplanus
petrolearius DSM 11571]
Length = 600
Score = 48.7 bits (115), Expect = 0.001, Method: Composition-based stats.
Identities = 35/205 (17%), Positives = 68/205 (33%), Gaps = 10/205 (4%)
Query: 115 ILLVVRLVVPIIFLILGIIWIFGYDKLLEYP---FQLRVGAVILIGYVGFCAPSVWISNL 171
LL ++ + +L F +L Y + V AV I F PS+
Sbjct: 40 TLLSAFALLIVQLFLLVFGVEFNLIPILPYSISQLLVFVIAVFAIFAALFYYPSLV---- 95
Query: 172 VQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELS- 230
R++ I P AL + + + +++ + V + +S E + + ++
Sbjct: 96 AAGRKTRIDIDLPYALTYME-ALSTNVTLYSLFKSVF-EAEDLYGEVSHECGMIVRDVEI 153
Query: 231 FLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKK 290
F + A N T + + L R G ++ + R E E
Sbjct: 154 FGEDLLTAMRNLQKITPSENFADLLNDLALVFRTGGNLKEFFNSRSDSYRELARQELEAT 213
Query: 291 AASLGPKLTVPMIIFFLPVLILVII 315
+ V + F + L+I+
Sbjct: 214 LQIMEMIAEVYVTAFVAGPIALIIM 238
Score = 47.6 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 22/169 (13%), Positives = 57/169 (33%), Gaps = 14/169 (8%)
Query: 107 FRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSV 166
+ S+Y + + + + + W + + + I + + P
Sbjct: 334 YISDYQVGLFFGLAFSMIVA-------WQYVSGGVAAIFPEFTFEVFICLFVIALVLPVS 386
Query: 167 WISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTI 226
+ ++ P+ L + + G+++ A+ V + LS E+ +
Sbjct: 387 IAYESRKMYTRRVEAQMPEFLRDIADMKDLGMTLQTAIEMV---SSSKLGLLSSELKIAS 443
Query: 227 AELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVL 275
E+ + + A R + V+ A ++++ I D LR +
Sbjct: 444 REVKWGYSVSSALVRMEERIGLVSVKRAISLIVKASE----ITDQLRDI 488
>gi|146296450|ref|YP_001180221.1| type II secretion system protein [Caldicellulosiruptor
saccharolyticus DSM 8903]
gi|145410026|gb|ABP67030.1| type II secretion system protein [Caldicellulosiruptor
saccharolyticus DSM 8903]
Length = 303
Score = 48.7 bits (115), Expect = 0.001, Method: Composition-based stats.
Identities = 37/225 (16%), Positives = 82/225 (36%), Gaps = 20/225 (8%)
Query: 96 ENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVIL 155
E I +L+AA + S + ++ L + IL +I L Y F + V + I
Sbjct: 57 EKIDRQLKAAEL--KVSTDDFIMYYLYFAVFCFILAVIL-----NQLTYFFVIVVCSTIG 109
Query: 156 IGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQS 215
I + + + R+ + + + + I + ++ L++ +
Sbjct: 110 I--------KIILDYISTSRRFKFELKFGEFTQSVAIMLRGTPNLMSVLQQAMNE--ETD 159
Query: 216 VPLSEEMLLTIAELSFLPNRQVAFENFYNRTQ-MDCVRNATQALIQSDRYGTSIGDSLRV 274
L E+ + + E+ + A + F R V +++ ++ G S+ D
Sbjct: 160 SKLKMELEMIVQEVQSGTTLEQALKKFKERNNFSSVVGTWVDSIVFANLSGASLSDVCMN 219
Query: 275 LVSETRSE--RLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGP 317
+ + R +KK A L + + I L ++ ++ P
Sbjct: 220 AARKINDKLSRARLIKKKTARLKSVMLAIIGIITLTLVFILFFFP 264
>gi|119025149|ref|YP_908994.1| hypothetical protein BAD_0131 [Bifidobacterium adolescentis ATCC
15703]
gi|154486515|ref|ZP_02027922.1| hypothetical protein BIFADO_00330 [Bifidobacterium adolescentis
L2-32]
gi|118764733|dbj|BAF38912.1| hypothetical protein [Bifidobacterium adolescentis ATCC 15703]
gi|154084378|gb|EDN83423.1| hypothetical protein BIFADO_00330 [Bifidobacterium adolescentis
L2-32]
Length = 171
Score = 48.3 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 29/153 (18%), Positives = 52/153 (33%), Gaps = 33/153 (21%)
Query: 183 WPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENF 242
P L++L + + G SI +AL V + G + L+ A+ +
Sbjct: 40 LPLILEMLSVAIRQGASIPRALITVGNIVEG---EFGGGLRSAGERLNSGMPWNEAWPDD 96
Query: 243 YNRTQMDC------------VRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKK 290
+ + V A+ Q D ER E+
Sbjct: 97 DDCAVVRDAFSSSWSSGSSPVNRLATAIEQLD-----------------WDER-SRIEQS 138
Query: 291 AASLGPKLTVPMIIFFLPVLILVIIGPAILSII 323
AA L +L +P + LP + + + PA++S +
Sbjct: 139 AAKLSIRLLLPTGLCMLPAFVAIGVIPAVMSFL 171
>gi|227875851|ref|ZP_03993977.1| type II secretion system protein [Mobiluncus mulieris ATCC 35243]
gi|306819132|ref|ZP_07452846.1| type II secretion system protein [Mobiluncus mulieris ATCC 35239]
gi|307700039|ref|ZP_07637088.1| type II secretion system F domain protein [Mobiluncus mulieris
FB024-16]
gi|227843599|gb|EEJ53782.1| type II secretion system protein [Mobiluncus mulieris ATCC 35243]
gi|304648108|gb|EFM45419.1| type II secretion system protein [Mobiluncus mulieris ATCC 35239]
gi|307614800|gb|EFN94020.1| type II secretion system F domain protein [Mobiluncus mulieris
FB024-16]
Length = 305
Score = 48.3 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 38/166 (22%), Positives = 64/166 (38%), Gaps = 5/166 (3%)
Query: 127 FLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDA 186
FL++ G L +L V AV L G + P + ++ K Q++ +AWP
Sbjct: 73 FLLISAGCALGCSLALMIVVKLGVVAV-LGGLLAAFTPYLSLNVKRSKIQNARGKAWPHV 131
Query: 187 LDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRT 246
+D L+ V +G+S+ + L +VA L + + N + N
Sbjct: 132 VDNLISGVRAGMSLGETLTKVAT---SVPPSLQAPFAHFVLDYHARGNLDGSLAMLKNEL 188
Query: 247 QMDCVRNATQALIQSDRYGTS-IGDSLRVLVSETRSERLMEAEKKA 291
+AL + + G + + L L S R+E AE A
Sbjct: 189 ADPVADRIIEALRLAAQVGGNDLVALLEDLGSMIRAEERTRAEILA 234
>gi|160942275|ref|ZP_02089584.1| hypothetical protein CLOBOL_07161 [Clostridium bolteae ATCC
BAA-613]
gi|158434832|gb|EDP12599.1| hypothetical protein CLOBOL_07161 [Clostridium bolteae ATCC
BAA-613]
Length = 293
Score = 48.3 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 24/159 (15%), Positives = 61/159 (38%), Gaps = 8/159 (5%)
Query: 171 LVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELS 230
L+ K++ ++ P + + ++ + L V + E+ + A++
Sbjct: 140 LLAKKRGELEGELPRFVSTIEQELK---NSRDVLSIVENYKKNAGEEFANELEILAADMR 196
Query: 231 FLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKK 290
+ + A F R + + + LI R G ++L + + L +K+
Sbjct: 197 S-SSYEAALTRFEARINSPMLSDVVRGLIGVLR-GDDGAMYFQMLSHDFKQMELQRLKKE 254
Query: 291 AASLGPKL---TVPMIIFFLPVLILVIIGPAILSIIDTM 326
A + PK+ + M++ F+ + +I+ + S+
Sbjct: 255 AQKIPPKIRVFSFLMLVCFIVTYLAIIVFEILKSMGSMF 293
>gi|291526237|emb|CBK91824.1| hypothetical protein EUR_28790 [Eubacterium rectale DSM 17629]
Length = 247
Score = 48.3 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 26/185 (14%), Positives = 68/185 (36%), Gaps = 23/185 (12%)
Query: 146 FQLRVGAVILIGYVGFCAPSVWISNLV--------------QKRQSSIKRAWPDALDLLL 191
F + A ++I Y+ + +P V I+ ++++ + + + L +L
Sbjct: 17 FIKSMAATVIIAYLFYDSPIVVIAFPAVFAYCAKLCRQEGVRRQKEKLNEEFMNVLKVLS 76
Query: 192 ICVESGISIDQALRRVAEDIG---GQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
+ +G S++ A + +++ G + E+ ++ + F +R+ +
Sbjct: 77 SNMLAGYSVENAWQEAEKEMELMYGNDSLMLSEIQEMNRQIKMNQTFEAVLSEFAHRSGL 136
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSE----RLMEAEKKAASLGPKLT--VPM 302
+ + N + + R G D + ++ R +E A L K +P+
Sbjct: 137 EDIVNFSDIFSFAKRSGGRFVDIIESTTYRMWTKYDTNRQIEVAVSAKRLEQKTMNYIPI 196
Query: 303 IIFFL 307
+
Sbjct: 197 FLLAF 201
>gi|291520244|emb|CBK75465.1| Flp pilus assembly protein TadB [Butyrivibrio fibrisolvens 16/4]
Length = 245
Score = 48.3 bits (114), Expect = 0.002, Method: Composition-based stats.
Identities = 20/182 (10%), Positives = 76/182 (41%), Gaps = 18/182 (9%)
Query: 145 PFQLRVGAVILIGYV----------GFCAPSVWISNL----VQKRQSSIKRAWPDALDLL 190
PF +G +++ ++ G W+ +++ + + + + L+
Sbjct: 22 PFFQALGISVIVAFLFYKSIYGILSGLLIVPFWLKLKSEEIKAEKRGRLSAEFKEFMMLI 81
Query: 191 LICVESGISIDQALRRVAEDIGGQSV---PLSEEMLLTIAELSFLPNRQVAFENFYNRTQ 247
+ +++G S+++A+++ ++ ++ ++ + +++ + AF F +
Sbjct: 82 VASLQTGYSLERAIKQSEVELHKLYPNGCIIAGQVHILNQKIAMNVQLEKAFFEFAKAIE 141
Query: 248 MDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFL 307
++ + + + + R G + G +R + L++ E + + +L + ++ +
Sbjct: 142 LEEALSLAEIISFAKRSGGNYGKHIRDTALKIEENILIKQEIETITTEKRLELK-VMCIM 200
Query: 308 PV 309
P+
Sbjct: 201 PI 202
>gi|150399784|ref|YP_001323551.1| type II secretion system protein [Methanococcus vannielii SB]
gi|150399789|ref|YP_001323556.1| type II secretion system protein [Methanococcus vannielii SB]
gi|150399794|ref|YP_001323561.1| type II secretion system protein [Methanococcus vannielii SB]
gi|150399799|ref|YP_001323566.1| type II secretion system protein [Methanococcus vannielii SB]
gi|150012487|gb|ABR54939.1| type II secretion system protein [Methanococcus vannielii SB]
gi|150012492|gb|ABR54944.1| type II secretion system protein [Methanococcus vannielii SB]
gi|150012497|gb|ABR54949.1| type II secretion system protein [Methanococcus vannielii SB]
gi|150012502|gb|ABR54954.1| type II secretion system protein [Methanococcus vannielii SB]
Length = 351
Score = 48.3 bits (114), Expect = 0.002, Method: Composition-based stats.
Identities = 25/163 (15%), Positives = 60/163 (36%), Gaps = 11/163 (6%)
Query: 105 AGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAP 164
AG E + ++++V IF ++ + + ++I + G P
Sbjct: 111 AGIIDER----VYFLKIIVFSIFAVILLFLYGVITSDPISGITNGIIFALIILFGGIFYP 166
Query: 165 SVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLL 224
+ ++ + + + + + +L SG S+ +A++ +A + S E
Sbjct: 167 KLKLTLFRGEIKIQVLMSILHLISML----NSGASVQEAIKNIANNPEYGLT--SYEFRS 220
Query: 225 TIAEL-SFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGT 266
I ++ N A E R+++ ++ LI + G
Sbjct: 221 IIKDINQGGYNFVEALERAKVRSKIPLLKKLYDQLILAANKGG 263
>gi|312126627|ref|YP_003991501.1| hypothetical protein Calhy_0384 [Caldicellulosiruptor
hydrothermalis 108]
gi|311776646|gb|ADQ06132.1| hypothetical protein Calhy_0384 [Caldicellulosiruptor
hydrothermalis 108]
Length = 252
Score = 48.3 bits (114), Expect = 0.002, Method: Composition-based stats.
Identities = 36/236 (15%), Positives = 88/236 (37%), Gaps = 12/236 (5%)
Query: 93 LVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGA 152
++ E +++L A S+ + + + ++F + G ++ ++
Sbjct: 25 IITEKKISRLIVA--SSKTDKFAFQNLTIPLTVLFAVGGFLFARLVRA---EGLVAQILL 79
Query: 153 VILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIG 212
G +G P + + R++ ++ + D + + +++G+S+D+ +AE I
Sbjct: 80 ATGFGMIGHELPK----EIERTRKNKLRSSIADIALMCELGLKAGLSLDRIFAVIAETI- 134
Query: 213 GQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSL 272
+ L A N + F ++ + + +AL++ ++ G S SL
Sbjct: 135 -VEPRYKDAFLQAAATYKTTHNIEDCFTILRSQLDLPELEILKRALLEVEKVGLSGIQSL 193
Query: 273 RVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMKD 328
V ++ + KK+ T ++ LI + P DT+
Sbjct: 194 EVFSQVETMNKIEQIYKKSDKARSYTTYAIVAMVF-ALISIYFFPLFKLATDTLNQ 248
>gi|225017405|ref|ZP_03706597.1| hypothetical protein CLOSTMETH_01331 [Clostridium methylpentosum
DSM 5476]
gi|224949815|gb|EEG31024.1| hypothetical protein CLOSTMETH_01331 [Clostridium methylpentosum
DSM 5476]
Length = 329
Score = 48.3 bits (114), Expect = 0.002, Method: Composition-based stats.
Identities = 43/299 (14%), Positives = 105/299 (35%), Gaps = 31/299 (10%)
Query: 22 VSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLR 81
+ F ++ + L +G L R L S + + L
Sbjct: 44 LLCFGTLFGLGAFFLLAGLL----------RLPTSASTKAVLTVTSRGKSQKGSINAVLF 93
Query: 82 NFVKKLNLKAILVD---ENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGY 138
+ +L+ L + + + +L++A + S + V G+I +
Sbjct: 94 DMAARLSPLVHLDNYKRKKLEAQLKSAEI--KMSPETYIAAAWVKA------GLIALLII 145
Query: 139 DKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGI 198
LL +P V ++ + + +VQ+R+ I+ P ++ + + +
Sbjct: 146 PALLIFPILAPV--IVFLAVAVYFKEQKRADEIVQQRREEIEAELPRFVNTIEQELRASR 203
Query: 199 SIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQAL 258
+ L + + E+ +TIA+++ + A +R + + + L
Sbjct: 204 DV---LNILKSYQRNAGHAMKRELEITIADMASGNE-ENALTRMESRIGSTMLSDVVRGL 259
Query: 259 IQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKL---TVPMIIFFLPVLILVI 314
I S + G + ++L + L + + +A K+ + ++ FL + + V+
Sbjct: 260 I-SVKRGDNGIMYFQMLSMTFKQLELQKLKLEAMKQPGKMRKYSFMLLGCFLLMYLGVL 317
>gi|284989267|ref|YP_003407821.1| Type II secretion system F domain-containing protein
[Geodermatophilus obscurus DSM 43160]
gi|284062512|gb|ADB73450.1| Type II secretion system F domain protein [Geodermatophilus
obscurus DSM 43160]
Length = 303
Score = 48.3 bits (114), Expect = 0.002, Method: Composition-based stats.
Identities = 35/203 (17%), Positives = 69/203 (33%), Gaps = 3/203 (1%)
Query: 123 VPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRA 182
L + ++ + P + V + + V F V + + + + ++RA
Sbjct: 104 AAFGALFVPLLTTALGAAGVRLPVVVPVAGSLALAGVLFLVVDVVVRDQAAEARGQMRRA 163
Query: 183 WPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENF 242
LDL+ + ++ AL R A G +A
Sbjct: 164 LCSYLDLVSLRRDASEGPTIALERAA--ALGDGWVFGRVADALVAARLAGEPPWDGLRRL 221
Query: 243 YNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPM 302
T + + + + + G SI +LR R + L E E A + KLT P
Sbjct: 222 AADTGVGELADVADIAAVAAQDGASIAPTLRARAQSLRVQLLAEEEAAANTASEKLTAP- 280
Query: 303 IIFFLPVLILVIIGPAILSIIDT 325
+ +L+ + PA+ ++ +
Sbjct: 281 VALLSIAFLLLFLYPALARLMAS 303
>gi|283797115|ref|ZP_06346268.1| conserved hypothetical protein [Clostridium sp. M62/1]
gi|291075532|gb|EFE12896.1| conserved hypothetical protein [Clostridium sp. M62/1]
Length = 290
Score = 48.3 bits (114), Expect = 0.002, Method: Composition-based stats.
Identities = 29/188 (15%), Positives = 75/188 (39%), Gaps = 10/188 (5%)
Query: 130 LGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDL 189
G + + + P + V+++ + + + ++ ++ I+ P +
Sbjct: 98 AGAVLLGVIPCVFLLPLLSPI--VVILAVLLYFKETQKADEKLKAKREEIEGELPRMVAT 155
Query: 190 LLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMD 249
+ ++S ++ L R + G L+ E+ + +A++ N + A F R
Sbjct: 156 IEQELKSSRNVIGMLERFKTNAG---PALTGELDILLADMRS-SNYEAALTRFEARLNSP 211
Query: 250 CVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKL---TVPMIIFF 306
+ + + LI R S+ ++L + + L + +A + PK+ + M++ F
Sbjct: 212 MLSDVVRGLIGVLRGDDSVV-YFQMLAHDFKQIELQRLKAEAQKIPPKIRVFSFAMLMCF 270
Query: 307 LPVLILVI 314
L + +I
Sbjct: 271 LLTYLAII 278
>gi|330893149|gb|EGH25810.1| type II secretion system, protein F domain [Pseudomonas syringae
pv. mori str. 301020]
Length = 179
Score = 48.3 bits (114), Expect = 0.002, Method: Composition-based stats.
Identities = 17/93 (18%), Positives = 35/93 (37%), Gaps = 1/93 (1%)
Query: 217 PLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLV 276
PL + M + + A +F + D L + RYG + + + L+
Sbjct: 2 PLKDGMSRIERNVQLGVSLPDAARDFAELYERDEFHLFALGLRVNHRYGGNASELMENLI 61
Query: 277 SETRSERLMEAEKKAASLGPKLTVPMIIFFLPV 309
R + +A + ++T +++ LPV
Sbjct: 62 KLIRDREQAGRQLRAMTGETRMTA-LVLALLPV 93
>gi|291526747|emb|CBK92333.1| hypothetical protein ERE_01990 [Eubacterium rectale M104/1]
Length = 247
Score = 48.3 bits (114), Expect = 0.002, Method: Composition-based stats.
Identities = 26/185 (14%), Positives = 68/185 (36%), Gaps = 23/185 (12%)
Query: 146 FQLRVGAVILIGYVGFCAPSVWISNLV--------------QKRQSSIKRAWPDALDLLL 191
F + A ++I Y+ + +P V I+ ++++ + + + L +L
Sbjct: 17 FIKSMAATVIIAYLFYDSPIVVIAFPAVFAYCAKLCRQEGVRRQKEKLNEEFMNVLKVLS 76
Query: 192 ICVESGISIDQALRRVAEDIG---GQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
+ +G S++ A + +++ G + E+ ++ + F +R+ +
Sbjct: 77 SNMLAGYSVENAWQEAEKEMELMYGNDSLMLSEIQEMNRQIKMNQTFEAVLSEFAHRSGL 136
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSE----RLMEAEKKAASLGPKLT--VPM 302
+ + N + + R G D + ++ R +E A L K +P+
Sbjct: 137 EDIVNFSDIFSFAKRSGGRFVDIIESTTYRMWTKYDTNRQIEVAVSAKRLEQKTMNYIPI 196
Query: 303 IIFFL 307
+
Sbjct: 197 FLLAF 201
>gi|269977486|ref|ZP_06184458.1| type II secretion system protein [Mobiluncus mulieris 28-1]
gi|269934402|gb|EEZ90964.1| type II secretion system protein [Mobiluncus mulieris 28-1]
Length = 305
Score = 48.3 bits (114), Expect = 0.002, Method: Composition-based stats.
Identities = 38/166 (22%), Positives = 64/166 (38%), Gaps = 5/166 (3%)
Query: 127 FLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDA 186
FL++ G L +L V AV L G + P + ++ K Q++ +AWP
Sbjct: 73 FLLISAGCALGCSLALMIVVKLGVVAV-LGGLLAALTPYLSLNVKRSKIQNARGKAWPHV 131
Query: 187 LDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRT 246
+D L+ V +G+S+ + L +VA L + + N + N
Sbjct: 132 VDNLISGVRAGMSLGETLTKVAT---SVPPSLQAPFAHFVLDYHARGNLDGSLAMLKNEL 188
Query: 247 QMDCVRNATQALIQSDRYGTS-IGDSLRVLVSETRSERLMEAEKKA 291
+AL + + G + + L L S R+E AE A
Sbjct: 189 ADPVADRIIEALRLAAQVGGNDLVALLEDLGSMIRAEERTRAEILA 234
>gi|187933799|ref|YP_001886614.1| pilus biogenesis protein [Clostridium botulinum B str. Eklund 17B]
gi|187721952|gb|ACD23173.1| bacterial type II secretion system protein F [Clostridium botulinum
B str. Eklund 17B]
Length = 358
Score = 48.3 bits (114), Expect = 0.002, Method: Composition-based stats.
Identities = 38/190 (20%), Positives = 74/190 (38%), Gaps = 29/190 (15%)
Query: 150 VGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDA--------LDLLLICVESGISID 201
+ + I G P + I L+ K+ S+ + + +L I V SG++I
Sbjct: 181 IFSFIFFVCWGVFIPFISIKRLINKKYVSLLSNFKIFNKFLEYVIVFILSIIVNSGMNIS 240
Query: 202 QALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQS 261
LR +E + +S+++ ++ A T ++ T A+++
Sbjct: 241 YGLRYCSESMHFNY--ISDKLNKINEDILKGSTLSEAI------TDINIFSKYTVAVVRV 292
Query: 262 DRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPK---LTVP-MIIFFLPVLILVIIGP 317
SIG++L+ L + E+ K L P +IIF V+ + +
Sbjct: 293 REESGSIGEALKELS--------LILEESLIKTVNKYLSLLQPFLIIFISIVITVFFMI- 343
Query: 318 AILSIIDTMK 327
IL + D++K
Sbjct: 344 FILPLFDSLK 353
>gi|306823785|ref|ZP_07457159.1| conserved hypothetical protein [Bifidobacterium dentium ATCC 27679]
gi|304552783|gb|EFM40696.1| conserved hypothetical protein [Bifidobacterium dentium ATCC 27679]
Length = 171
Score = 48.0 bits (113), Expect = 0.002, Method: Composition-based stats.
Identities = 34/141 (24%), Positives = 56/141 (39%), Gaps = 9/141 (6%)
Query: 183 WPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENF 242
P L++L + + G SI AL V +GG E + L+ + A+ +
Sbjct: 39 MPLVLEMLAVAIRRGASIPHALIVVGRIVGG---DFGEGLSSVGGALNQGVDWDQAWPS- 94
Query: 243 YNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPM 302
D + S G S + L + + + + E+ AA L +L +P
Sbjct: 95 -----GDDIALVRDVFAASWSSGASPLNRLDAAIEQLDWDERSQIERDAAKLSIRLLLPT 149
Query: 303 IIFFLPVLILVIIGPAILSII 323
+ FLP I V + PAI S +
Sbjct: 150 GLCFLPAFIAVGVIPAIASFL 170
>gi|167771227|ref|ZP_02443280.1| hypothetical protein ANACOL_02585 [Anaerotruncus colihominis DSM
17241]
gi|167666646|gb|EDS10776.1| hypothetical protein ANACOL_02585 [Anaerotruncus colihominis DSM
17241]
Length = 292
Score = 48.0 bits (113), Expect = 0.002, Method: Composition-based stats.
Identities = 38/242 (15%), Positives = 76/242 (31%), Gaps = 21/242 (8%)
Query: 60 ITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVV 119
++ Q+ + + +L + ++ L + L AG + + +
Sbjct: 37 LSRKQQGTKNEKLLDVYVTKIAGWIAPYLRLDRLKRNKVQRALDIAGL--QLTPEVYTAR 94
Query: 120 RLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSI 179
V + I L+ L V Y F + V+KR+ I
Sbjct: 95 AWVTAGAVGLCAIPMALLIPLLVPILIGLAVALWFSTYYAAF--------DFVKKRRKLI 146
Query: 180 KRAWPDALDLLLICVESGISIDQ---ALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQ 236
+ P + G S++ L+ + E+ TIA++ N +
Sbjct: 147 EGEIPRF------ALTVGQSLENDRDVLKILTSYRRVAGKDFGAELDQTIADMKTG-NYE 199
Query: 237 VAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGP 296
A F R + + + LI R G +++ + R +K+AA
Sbjct: 200 NALIRFETRIGSPMLSDVIRGLIGVLR-GDDQRMYFKMITFDMRQIEQNNLKKEAAKRPK 258
Query: 297 KL 298
K+
Sbjct: 259 KI 260
>gi|325275747|ref|ZP_08141627.1| type II secretion system protein [Pseudomonas sp. TJI-51]
gi|324099124|gb|EGB97090.1| type II secretion system protein [Pseudomonas sp. TJI-51]
Length = 89
Score = 48.0 bits (113), Expect = 0.002, Method: Composition-based stats.
Identities = 16/85 (18%), Positives = 36/85 (42%)
Query: 243 YNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPM 302
++ + L Q G+ SL L + RL +++ + + K++ M
Sbjct: 4 AQVLAVEEFTDTCVILRQLLAQGSGAMKSLLALKALLDDRRLTRLQERVSMMSAKMSAVM 63
Query: 303 IIFFLPVLILVIIGPAILSIIDTMK 327
++F P L++V+ GP ++ +
Sbjct: 64 MVFLFPALLIVLAGPGFSALARALS 88
>gi|256810062|ref|YP_003127431.1| Type II secretion system F domain protein [Methanocaldococcus
fervens AG86]
gi|256793262|gb|ACV23931.1| Type II secretion system F domain protein [Methanocaldococcus
fervens AG86]
Length = 576
Score = 48.0 bits (113), Expect = 0.002, Method: Composition-based stats.
Identities = 35/221 (15%), Positives = 83/221 (37%), Gaps = 12/221 (5%)
Query: 106 GFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPS 165
G + ++ + + + I ++ ++ F + + + + IL + F S
Sbjct: 305 GIKMKFKWKPVHFI-TIFFWILSVISFMFFFTKKSIFMFYGEDFLMFGILAAILPFILTS 363
Query: 166 VWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLT 225
W + + Q + +P L+ L + V SG+ I +A++ A PL++ +
Sbjct: 364 YW--QFIIENQKE--KYYPIFLNDLTMAVRSGMDIIRAMQVCA---RTNYGPLTKIVKKM 416
Query: 226 IAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLM 285
++S+ F + + + L + G I D L + RL
Sbjct: 417 AVQMSWGRPINEVFADLEKTEKSLIAKRIASILKECAVSGGDIKDILT--SVTVHAYRLS 474
Query: 286 EAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
E +K+ + + ++I+ L + + S++ T+
Sbjct: 475 EMKKEIS--SRQFIYVVVIYLTFFLYIGTSYIMVHSLLPTL 513
>gi|167747673|ref|ZP_02419800.1| hypothetical protein ANACAC_02394 [Anaerostipes caccae DSM 14662]
gi|239625016|ref|ZP_04668047.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
gi|167653035|gb|EDR97164.1| hypothetical protein ANACAC_02394 [Anaerostipes caccae DSM 14662]
gi|239521402|gb|EEQ61268.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
Length = 291
Score = 48.0 bits (113), Expect = 0.002, Method: Composition-based stats.
Identities = 34/230 (14%), Positives = 86/230 (37%), Gaps = 18/230 (7%)
Query: 96 ENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVIL 155
+ N L+A G + + ++ I+ +++F L ++
Sbjct: 73 SRMKNVLKATGINMTPEVYQAYALTKAGLLMAGIIPCLFLF----------PLLTPVIVF 122
Query: 156 IGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQS 215
+ + + +++ ++ SI+ P + L ++ + L V
Sbjct: 123 LAVMVYFKEIQRADEMLKTKRKSIEDELPRFVANLEQELQ---NNRDVLSMVENFRKNAG 179
Query: 216 VPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVL 275
EE+ + +A++ + + A F R + + + LI R S+ ++L
Sbjct: 180 AEFGEELGVLVADMRS-SSYEAALTRFEARLNSPMLSDVVRGLIGVLRGDNSVV-YFQML 237
Query: 276 VSETRSERLMEAEKKAASLGPKL---TVPMIIFFLPVLILVIIGPAILSI 322
+ + L + + +A + PK+ + M++ FL + +I+ I S+
Sbjct: 238 AHDFKQLELQKLKSEAQKIPPKIRVFSFLMLMCFLLTYLAIIVFEIIKSL 287
>gi|228982433|ref|ZP_04142692.1| hypothetical protein bthur0002_55660 [Bacillus thuringiensis Bt407]
gi|228776616|gb|EEM24924.1| hypothetical protein bthur0002_55660 [Bacillus thuringiensis Bt407]
Length = 274
Score = 48.0 bits (113), Expect = 0.002, Method: Composition-based stats.
Identities = 37/266 (13%), Positives = 101/266 (37%), Gaps = 19/266 (7%)
Query: 49 AVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNK-LRAAGF 107
+ ++ L++ Q + ++ + + R K R +K + K + D + K L+ +
Sbjct: 10 STHKKRLKQLQFNNKEELTNDEQTRAFIDKVTRPVLKYVVPKMKVRDSQELEKDLKLTKW 69
Query: 108 RSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVW 167
++ + + + + + II ++ I+ I + V ++ F
Sbjct: 70 DKYFNASQYIAMNITLKIIGVVALIVLI-----------PVSVPFALIWFSAFFFLFGFL 118
Query: 168 ISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIA 227
+N V + + + +PD + + + + IS +A+ +G PL +E +
Sbjct: 119 FNNSVTEAKEKLLGGFPDFIRITRGYLTADISFTKAVEGSIPYVGDAWRPLLQEF-IVNC 177
Query: 228 ELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEA 287
++ + + A + ++ + V+ + + G + +S + + R +L
Sbjct: 178 DI---HSVEKAIDKLKDQVDVFAVKELLSLVRLNLEQGVDVRESFERQIDKVREMQLEAI 234
Query: 288 EKKAAS---LGPKLTVPMIIFFLPVL 310
+ A L L P+++ +
Sbjct: 235 MNRIAKRQLLAMVLQGPLLLTLIGAF 260
>gi|150401575|ref|YP_001325341.1| type II secretion system protein [Methanococcus aeolicus Nankai-3]
gi|150014278|gb|ABR56729.1| type II secretion system protein [Methanococcus aeolicus Nankai-3]
Length = 295
Score = 48.0 bits (113), Expect = 0.002, Method: Composition-based stats.
Identities = 34/206 (16%), Positives = 80/206 (38%), Gaps = 8/206 (3%)
Query: 125 IIFLILGIIWI-FGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAW 183
I I G I I ++ + + ++ V PS+ ++K + +I
Sbjct: 31 IGLTIFGSIIIPLLFNHFMHLNIKTTFILFLVYLGVFLSIPSIIYEGKIEKFEKNI---- 86
Query: 184 PDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFY 243
P AL ++ + ++SG S+ +A+ V G + E M + + + + A
Sbjct: 87 PKALYVMTLSLDSGRSVTEAIEEVIN--AGVNGVDKEFMKILYLIIEKKYSFEDAMTTIT 144
Query: 244 NRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMI 303
+ R + +I++ + G + +LR L ++ + + + + +I
Sbjct: 145 ENSDSMVFRQIGRLIIENRKQGGELASTLRTLAKTLEDLMNIKQQLLSTTANGLVVGLVI 204
Query: 304 IFFLPVLILVIIGPAILSIIDTMKDH 329
+ + +IG L+++ TM +
Sbjct: 205 LCGVIPATAGLIG-GYLTVLSTMSPN 229
>gi|328954941|ref|YP_004372274.1| Type II secretion system F domain protein [Coriobacterium glomerans
PW2]
gi|328455265|gb|AEB06459.1| Type II secretion system F domain protein [Coriobacterium glomerans
PW2]
Length = 320
Score = 48.0 bits (113), Expect = 0.002, Method: Composition-based stats.
Identities = 29/140 (20%), Positives = 47/140 (33%), Gaps = 10/140 (7%)
Query: 178 SIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQV 237
+ A P+A L I + SG S+ Q +R V P+ E L + +
Sbjct: 145 KLASAMPEAFGALAIALGSGHSLAQGMRFVGSHAEE---PVRTEFLRASFSIVCGMSATS 201
Query: 238 AFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSE----RLMEAEKKAAS 293
A + R + AL S R G + D L R +E + A
Sbjct: 202 ALDELLARLPAPGLDLVALALKVSQRTGAPLKDLLAEASEMVGDRIELVRRLEVKTAQAR 261
Query: 294 LGPKLTVPM---IIFFLPVL 310
+ ++ M + L +L
Sbjct: 262 MSARMVALMPVAMTCILALL 281
>gi|302520917|ref|ZP_07273259.1| conserved hypothetical protein [Streptomyces sp. SPB78]
gi|302429812|gb|EFL01628.1| conserved hypothetical protein [Streptomyces sp. SPB78]
Length = 275
Score = 48.0 bits (113), Expect = 0.002, Method: Composition-based stats.
Identities = 25/134 (18%), Positives = 51/134 (38%), Gaps = 6/134 (4%)
Query: 193 CVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVR 252
CV +G +A V + G + E + AE+ + A+ F + +
Sbjct: 145 CVAAGAGPVEAAEAVGASLDGL---VGERLRHVAAEIRLGGEPERAWALFGS---LPGAG 198
Query: 253 NATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLIL 312
L ++ G + L ++ R+ A A G +T P+ + FLP ++
Sbjct: 199 GLAGLLQRATVSGAPVAGPALALAADCRARWARGATAAARRAGVLVTAPLGLCFLPAFLI 258
Query: 313 VIIGPAILSIIDTM 326
+ + P +L + +
Sbjct: 259 LGVAPVLLGLAGEL 272
>gi|229829729|ref|ZP_04455798.1| hypothetical protein GCWU000342_01826 [Shuttleworthia satelles DSM
14600]
gi|229791718|gb|EEP27832.1| hypothetical protein GCWU000342_01826 [Shuttleworthia satelles DSM
14600]
Length = 231
Score = 48.0 bits (113), Expect = 0.002, Method: Composition-based stats.
Identities = 29/155 (18%), Positives = 51/155 (32%), Gaps = 4/155 (2%)
Query: 146 FQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALR 205
F A++L+ + Q+R R + D L LL+ + +G S + A R
Sbjct: 15 FYSSPLALLLVIPIYLGLGPYLRKRREQRRYGIFLREFQDYLKLLVAALRNGYSAENAFR 74
Query: 206 RVAEDIGGQSV---PLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSD 262
E++G + PL + A + + + N + +
Sbjct: 75 LAEEELGKITPADSPLLTAVQKLSARIRLQMPLEEGLVEMARELGYEEAVNLADLMAFAR 134
Query: 263 RYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPK 297
R G L + R+ E+ AA L K
Sbjct: 135 RLGGDYSRFLERSARSI-ASRIELKEEMAADLAAK 168
>gi|291446569|ref|ZP_06585959.1| integral membrane protein [Streptomyces roseosporus NRRL 15998]
gi|291349516|gb|EFE76420.1| integral membrane protein [Streptomyces roseosporus NRRL 15998]
Length = 267
Score = 47.6 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 30/134 (22%), Positives = 53/134 (39%), Gaps = 6/134 (4%)
Query: 193 CVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVR 252
CV G +A V IGG P+ + + T E+ ++ F +
Sbjct: 132 CVAVGAGPREAAEEVGRSIGG---PVGDRLARTAVEIRLGGEPADSWGRFGE---IPGAG 185
Query: 253 NATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLIL 312
+ L ++ G D + L + R+ER A +A G +T P+ + FLP +
Sbjct: 186 PLARCLYRAGSTGAPAADPIARLAASIRAERAAAAVARAQRAGVLITAPVGLCFLPAFLA 245
Query: 313 VIIGPAILSIIDTM 326
V + P I+ + +
Sbjct: 246 VGVAPVIIGLAGDL 259
>gi|307353959|ref|YP_003895010.1| type II secretion system F domain-containing protein [Methanoplanus
petrolearius DSM 11571]
gi|307157192|gb|ADN36572.1| Type II secretion system F domain protein [Methanoplanus
petrolearius DSM 11571]
Length = 307
Score = 47.6 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 29/155 (18%), Positives = 61/155 (39%), Gaps = 9/155 (5%)
Query: 140 KLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGIS 199
L+ + + +++++G + + ++ S L R+ +I P A++ + +GI+
Sbjct: 91 SLILGTVFVLIISLVVVGGLTYSIFLIYPSILAGDRRRNIDSTLPYAINYITAMSTAGIT 150
Query: 200 IDQALRRVAE-DIGGQSVPLSEEMLLTIAELS-FLPNRQVAFENFYNRTQMDCVRNATQA 257
+ R + +I G+S E E+ F + A T D +R+ Q
Sbjct: 151 PAEVFRLLGNSEIYGESAV---EARYITREIDVFGKDLLDALRLAGQYTPSDRMRDFLQG 207
Query: 258 LIQSDRYGTSIGDSLRVLVS----ETRSERLMEAE 288
I S G+++ + R E R + E
Sbjct: 208 AIASISSGSNLTEYFRNKSEQYMKENRQTQKTFLE 242
>gi|283455154|ref|YP_003359718.1| type II secretion system protein, pilus assembly [Bifidobacterium
dentium Bd1]
gi|283101788|gb|ADB08894.1| type II secretion system protein, pilus assembly [Bifidobacterium
dentium Bd1]
Length = 171
Score = 47.6 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 33/141 (23%), Positives = 56/141 (39%), Gaps = 9/141 (6%)
Query: 183 WPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENF 242
P L++L + + G SI AL V +GG E + L+ + A+ +
Sbjct: 39 MPLVLEMLAVAIRRGASIPHALIVVGRIVGG---DFGEGLSSVGGALNQGVDWDQAWPS- 94
Query: 243 YNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPM 302
D + S G S + L + + + + E+ AA L +L +P
Sbjct: 95 -----GDDIALVRDVFAASWSSGASPLNRLDAAIEQLDWDERSQIERDAAKLSIRLLLPT 149
Query: 303 IIFFLPVLILVIIGPAILSII 323
+ FLP I + + PAI S +
Sbjct: 150 GLCFLPAFIAIGVIPAIASFL 170
>gi|160931311|ref|ZP_02078711.1| hypothetical protein CLOLEP_00148 [Clostridium leptum DSM 753]
gi|156869695|gb|EDO63067.1| hypothetical protein CLOLEP_00148 [Clostridium leptum DSM 753]
Length = 297
Score = 47.6 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 36/227 (15%), Positives = 84/227 (37%), Gaps = 8/227 (3%)
Query: 102 LRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRV--GAVILIGYV 159
+RAA + RL+ +I IL + + L + + +
Sbjct: 75 MRAALRLQGTTPEAFYGRRLICALIGAILPWLLNAVAIAVGANSPNLLIPSALCVALAGA 134
Query: 160 GFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLS 219
G+ P+ + A +DL+++ + + AL A PL
Sbjct: 135 GWMLPAARLKAAAGPTNDDSFEALLVFIDLVVLERLANETSVDALTNAAN---MSDAPLF 191
Query: 220 EEMLLTIAELSFL-PNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSE 278
++ + S + + ++ + + + + G S+ DS R V+E
Sbjct: 192 VQIRQVLNRASLENVDPWNGLDRLAEDIKLPELTDVVS-IARLQEEGASLVDSFRARVAE 250
Query: 279 TRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDT 325
R L+ ++++ ++ +L + I+ ++L+++G A L++I
Sbjct: 251 LRDAYLLRLQQESTTITQRLGLWTIL-QAGSVMLILLGAAALTLITA 296
>gi|88856327|ref|ZP_01130986.1| hypothetical protein A20C1_00265 [marine actinobacterium PHSC20C1]
gi|88814411|gb|EAR24274.1| hypothetical protein A20C1_00265 [marine actinobacterium PHSC20C1]
Length = 288
Score = 47.6 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 31/195 (15%), Positives = 68/195 (34%), Gaps = 17/195 (8%)
Query: 98 IVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIG 157
+ +L AG + +++ + + + + V+
Sbjct: 40 LRERLVQAGLPTTSP-------------SIVLIVSVVFSVAVAAVTFVLTSVIVVVLCSA 86
Query: 158 YVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVP 217
+ P++ IS + R+++ + WPD +D L+ V SG+++ +L +++ +
Sbjct: 87 ALALVLPTLAISWRARARRTATQIVWPDVVDQLVSAVRSGLALPDSLMTLSQTGPLVTRS 146
Query: 218 LSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTS-IGDSLRVLV 276
A N +A + + L S G S + + LR L
Sbjct: 147 AF---AAFAARYRATGNFSIAVDELKVALADPVADRILETLRMSREVGGSELTNVLRSLS 203
Query: 277 SETRSERLMEAEKKA 291
R E + +E +A
Sbjct: 204 VYLRQEAAIRSEIEA 218
>gi|125973149|ref|YP_001037059.1| hypothetical protein Cthe_0631 [Clostridium thermocellum ATCC
27405]
gi|256003945|ref|ZP_05428931.1| hypothetical protein ClothDRAFT_3050 [Clostridium thermocellum DSM
2360]
gi|281417342|ref|ZP_06248362.1| hypothetical protein Cther_2014 [Clostridium thermocellum JW20]
gi|125713374|gb|ABN51866.1| hypothetical protein Cthe_0631 [Clostridium thermocellum ATCC
27405]
gi|255992073|gb|EEU02169.1| hypothetical protein ClothDRAFT_3050 [Clostridium thermocellum DSM
2360]
gi|281408744|gb|EFB39002.1| hypothetical protein Cther_2014 [Clostridium thermocellum JW20]
gi|316940624|gb|ADU74658.1| hypothetical protein Clo1313_1597 [Clostridium thermocellum DSM
1313]
Length = 294
Score = 47.6 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 45/307 (14%), Positives = 111/307 (36%), Gaps = 35/307 (11%)
Query: 14 LAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLR 73
+ + +I L++ ++ P + ++ K + R+ +++++ +
Sbjct: 3 ILSKLCALAAIIYLVFTLIYPLF--KPMTRKRKEHS--RDFIKRKR-----NQKKVEKYL 53
Query: 74 TRDSKSLRNFVKKLNLKAILVDEN--IVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILG 131
LR K L I +E ++ +L E L +L V V I + +
Sbjct: 54 YFKDIVLRRLSNKFFLSDIKRNELNFLIKRLDLKITPEEIRLKQILYVIGAVGISLIAMN 113
Query: 132 IIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLL 191
I + GY ++ +G+ P + +++K+ ++I +P ++L
Sbjct: 114 INTLIGYG-------------CLIFVVLGWLYPVDELEKMIEKKNNNILADFPSFYNMLY 160
Query: 192 ICVESGISIDQALRRVAEDI-GGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDC 250
SI+ L V +D + ++ E+ + + + + + A + R +
Sbjct: 161 YQYA--RSINIYLADVVKDFLPNANEDMAAELEVFLDNIEYGE--EYALKQLKKRVPLRH 216
Query: 251 VRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEK---KAASLGPKLTVPMIIFFL 307
+ + R +I + L +E R+M E + ++ +I+
Sbjct: 217 IIKFCDIMETRLRGYDNISQ-MTYLKNELYDLRVMSLEDELHRREQKNARMQFVLIVVL- 274
Query: 308 PVLILVI 314
+ +VI
Sbjct: 275 -AIYIVI 280
>gi|300788923|ref|YP_003769214.1| type II secretion system protein [Amycolatopsis mediterranei U32]
gi|299798437|gb|ADJ48812.1| type II secretion system protein [Amycolatopsis mediterranei U32]
Length = 283
Score = 47.6 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 36/206 (17%), Positives = 77/206 (37%), Gaps = 8/206 (3%)
Query: 125 IIFLILGIIWIFGYDKLLEY-----PFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSI 179
+ FL+ G +WI +L P L A + VG+ P V + + V+ +++
Sbjct: 81 VGFLLGGALWIPVLTTVLALVGAAPPIVLTGAASVGGAVVGWQLPVVMLKSKVKHARAAF 140
Query: 180 KRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAF 239
A L+ + +ALR A + G L + F
Sbjct: 141 SGALAAYCRLVALGRLGDRGPVEALRYPA--MLGTGWAFRRIKLAIDEAVLRGRMPWAGF 198
Query: 240 ENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLT 299
T + +++ + + + G SI D+LR + ++L + + ++ ++
Sbjct: 199 AELAEETGVRELKDIGHIIASAGQDGASIVDTLRAKAAALDEKQLADRKTGSSVRSDRMD 258
Query: 300 VPMIIFFLPVLILVIIGPAILSIIDT 325
+P+ + L I + P + ++ T
Sbjct: 259 MPVALLGL-AFIAFLAFPGLYLMLHT 283
>gi|304390832|ref|ZP_07372784.1| type II secretion system protein [Mobiluncus curtisii subsp.
curtisii ATCC 35241]
gi|304325715|gb|EFL92961.1| type II secretion system protein [Mobiluncus curtisii subsp.
curtisii ATCC 35241]
Length = 295
Score = 47.6 bits (112), Expect = 0.003, Method: Composition-based stats.
Identities = 33/166 (19%), Positives = 59/166 (35%), Gaps = 5/166 (3%)
Query: 127 FLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDA 186
FL+L ++ L L V L G + P + + + Q +AWP+
Sbjct: 63 FLVLSLLAGVSAGICLTVVTGL-VMVGWLAGLLAAYLPFLGLQGKLHSVQGQRGKAWPNL 121
Query: 187 LDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRT 246
+D L+ V +G+S+ + L VA L A+ N + + +
Sbjct: 122 VDDLVSGVRAGLSLGETLLEVA---ARAPKSLRVPFAHFAADYRAGGNLDASLKILKHEL 178
Query: 247 QMDCVRNATQALIQSDRYGTS-IGDSLRVLVSETRSERLMEAEKKA 291
+AL + + G + + L L + R+E E A
Sbjct: 179 ADPVGDRIVEALRLAAQVGGNDLVILLEDLGAMLRAEERTRGEVLA 224
>gi|171741512|ref|ZP_02917319.1| hypothetical protein BIFDEN_00597 [Bifidobacterium dentium ATCC
27678]
gi|171277126|gb|EDT44787.1| hypothetical protein BIFDEN_00597 [Bifidobacterium dentium ATCC
27678]
Length = 183
Score = 47.6 bits (112), Expect = 0.003, Method: Composition-based stats.
Identities = 33/141 (23%), Positives = 56/141 (39%), Gaps = 9/141 (6%)
Query: 183 WPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENF 242
P L++L + + G SI AL V +GG E + L+ + A+ +
Sbjct: 51 MPLVLEMLAVAIRRGASIPHALIVVGRIVGG---DFGEGLSSVGGALNQGVDWDQAWPS- 106
Query: 243 YNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPM 302
D + S G S + L + + + + E+ AA L +L +P
Sbjct: 107 -----GDDIALVRDVFAASWSSGASPLNRLDAAIEQLDWDERSQIERDAAKLSIRLLLPT 161
Query: 303 IIFFLPVLILVIIGPAILSII 323
+ FLP I + + PAI S +
Sbjct: 162 GLCFLPAFIAIGVIPAIASFL 182
>gi|297182320|gb|ADI18488.1| type II secretory pathway, component pulf [uncultured
Verrucomicrobiales bacterium HF4000_13K17]
Length = 417
Score = 47.6 bits (112), Expect = 0.003, Method: Composition-based stats.
Identities = 26/163 (15%), Positives = 58/163 (35%), Gaps = 12/163 (7%)
Query: 169 SNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAE-DIGGQSVPLSEEMLLTIA 227
Q+R+ + + L +++G+ + AL + D G + ++ +A
Sbjct: 65 RRFGQRRKKPKLQDLANFTRQLANLLKAGMPLTGALNSMTSLDSEGIPKSVCAQL---LA 121
Query: 228 ELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEA 287
++ ++ F + ++++ S+ + L+ L ER E
Sbjct: 122 DVREGRTLSMSMGKFPEIFPDMYLN-----MVKAGESSGSMVEVLKRLADHY--ERFAEV 174
Query: 288 EKKAASLGPKLTVPMII-FFLPVLILVIIGPAILSIIDTMKDH 329
+K S M + F L + + I P ++I MK
Sbjct: 175 RQKIISALVYPMFVMGLGFLLIFVFMSYILPKFMTIFKGMKVQ 217
>gi|331002545|ref|ZP_08326062.1| hypothetical protein HMPREF0491_00924 [Lachnospiraceae oral taxon
107 str. F0167]
gi|330409148|gb|EGG88604.1| hypothetical protein HMPREF0491_00924 [Lachnospiraceae oral taxon
107 str. F0167]
Length = 266
Score = 47.6 bits (112), Expect = 0.003, Method: Composition-based stats.
Identities = 34/191 (17%), Positives = 74/191 (38%), Gaps = 12/191 (6%)
Query: 125 IIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWP 184
II ++G + F + F++ + + I+ + G A ++ +KR+ + +
Sbjct: 36 IIGYLIGFVPGFVVIMIF---FRIMIISAIVGAFCGIPAIRLYRKYRKEKRKRDLLIEFR 92
Query: 185 DALDLLLICVESGISIDQALRRVAEDI---GGQSVPLSEEMLLTIAELSFLPNRQVAFEN 241
D L+ L SG + +A +D+ G+ + E + IA ++ + ++
Sbjct: 93 DLLEALTTSYSSGKNTMEAFAESYQDLLSLYGEKSDIVNETRIIIAGMTNNIIIEDLLKD 152
Query: 242 FYNRTQMDCVRNATQALIQSDRYGTSIGDSL----RVLVS--ETRSERLMEAEKKAASLG 295
F R +D V + R G I + +++ E E +K L
Sbjct: 153 FAKRCGLDDVESFASTFESGLRQGGDIKQVVWDSRKIINDKIEIEMEIKTMLTEKENELN 212
Query: 296 PKLTVPMIIFF 306
+ +P++I
Sbjct: 213 IMMVMPLVIMI 223
>gi|315656391|ref|ZP_07909280.1| type II secretion system protein [Mobiluncus curtisii subsp.
holmesii ATCC 35242]
gi|315492950|gb|EFU82552.1| type II secretion system protein [Mobiluncus curtisii subsp.
holmesii ATCC 35242]
Length = 295
Score = 47.6 bits (112), Expect = 0.003, Method: Composition-based stats.
Identities = 33/166 (19%), Positives = 59/166 (35%), Gaps = 5/166 (3%)
Query: 127 FLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDA 186
FL+L ++ L L V L G + P + + + Q +AWP+
Sbjct: 63 FLVLSLLAGVSAGICLTVVTGL-VMVGWLAGLLAAYLPFLGLQGKLHSVQGQRGKAWPNL 121
Query: 187 LDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRT 246
+D L+ V +G+S+ + L VA L A+ N + + +
Sbjct: 122 VDDLVSGVRAGLSLGETLLEVA---ARAPKSLRVPFAHFAADYRAGGNLDASLKILKHEL 178
Query: 247 QMDCVRNATQALIQSDRYGTS-IGDSLRVLVSETRSERLMEAEKKA 291
+AL + + G + + L L + R+E E A
Sbjct: 179 ADPVGDRIVEALRLAAQVGGNDLVILLEDLGAMLRAEERTRGEVLA 224
>gi|297571777|ref|YP_003697551.1| type II secretion system protein F [Arcanobacterium haemolyticum
DSM 20595]
gi|296932124|gb|ADH92932.1| Type II secretion system F domain protein [Arcanobacterium
haemolyticum DSM 20595]
Length = 270
Score = 47.6 bits (112), Expect = 0.003, Method: Composition-based stats.
Identities = 29/155 (18%), Positives = 52/155 (33%), Gaps = 6/155 (3%)
Query: 139 DKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGI 198
+ + + V+ V P + S V++R+ + AWPD LD ++ + +G+
Sbjct: 42 GGVASFVLIRSLPIVVCCAVVAGLVPVLRRSARVRRREEVCRDAWPDVLDDVVASLRAGL 101
Query: 199 SIDQALRRVAEDIGGQSVPLSEE-MLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQA 257
S+ Q+L V E L E + A + +A
Sbjct: 102 SVSQSLAMVGER----GPELMREPFSRCATMIRAQGRMGPALDELKAEFADPMADRVLEA 157
Query: 258 LIQSDRYGT-SIGDSLRVLVSETRSERLMEAEKKA 291
+ S G + L L + R + E A
Sbjct: 158 MRLSHELGGRDLATMLARLAAVIREDNRARGELLA 192
>gi|50954221|ref|YP_061509.1| integral membrane protein [Leifsonia xyli subsp. xyli str. CTCB07]
gi|50950703|gb|AAT88404.1| integral membrane protein [Leifsonia xyli subsp. xyli str. CTCB07]
Length = 256
Score = 47.6 bits (112), Expect = 0.003, Method: Composition-based stats.
Identities = 27/142 (19%), Positives = 54/142 (38%), Gaps = 7/142 (4%)
Query: 191 LICVESGISI--DQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFE---NFYNR 245
L+ G++ + R+ + L A L+ + A R
Sbjct: 109 LLVAGVGLTFAGRAWMSRLVRSATATGPVAGIGLDLMGAALAGGLSVPGARRLIGEVRER 168
Query: 246 TQMD--CVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMI 303
+D + L +R G + D L + R +E +AA+L +L +P+
Sbjct: 169 AGLDTGDDHVLDRVLRIEERAGAPVADLLASASRQERRSARVEGRARAATLAVRLLLPLG 228
Query: 304 IFFLPVLILVIIGPAILSIIDT 325
+ LP +++ + P IL++I +
Sbjct: 229 VCVLPAFLVLGVAPVILAMISS 250
>gi|269217517|ref|ZP_06161371.1| putative integral membrane protein [Actinomyces sp. oral taxon 848
str. F0332]
gi|269212452|gb|EEZ78792.1| putative integral membrane protein [Actinomyces sp. oral taxon 848
str. F0332]
Length = 181
Score = 47.6 bits (112), Expect = 0.003, Method: Composition-based stats.
Identities = 33/139 (23%), Positives = 57/139 (41%), Gaps = 17/139 (12%)
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVPLSEE-----MLLTIAELSFLPNRQVAFENF 242
DL + + +G S+ L L+EE + L+ + A+++
Sbjct: 48 DLAVAAISAGCSVPALLV-------ALDSALAEEEEPPGLECVAKSLTMGGTWEEAWQSA 100
Query: 243 YNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPM 302
+R AL S G + L + R+ R+ A + AA LG KL +P+
Sbjct: 101 PSRFD-----PLRNALEPSWVDGAAAVPLLERTAASLRAGRVRRARESAARLGAKLVLPL 155
Query: 303 IIFFLPVLILVIIGPAILS 321
+ FLP IL+ + P ++S
Sbjct: 156 GLCFLPAFILLGVVPIVVS 174
>gi|283795332|ref|ZP_06344485.1| conserved hypothetical protein [Clostridium sp. M62/1]
gi|291076988|gb|EFE14352.1| conserved hypothetical protein [Clostridium sp. M62/1]
Length = 292
Score = 47.6 bits (112), Expect = 0.003, Method: Composition-based stats.
Identities = 38/242 (15%), Positives = 76/242 (31%), Gaps = 21/242 (8%)
Query: 60 ITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVV 119
++ Q+ + + +L + ++ L + L AG + + +
Sbjct: 37 LSRKQQGTKNEKLLDVYVTKIAGWIAPYLRLDRLKRNKVQRALDIAGL--QLTPEVYTAR 94
Query: 120 RLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSI 179
V + I L+ L V Y F + V+KR+ I
Sbjct: 95 AWVTAGAVGLCAIPMALLIPLLVPILIGLAVALWFSTYYAAF--------DFVKKRRKLI 146
Query: 180 KRAWPDALDLLLICVESGISIDQ---ALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQ 236
+ P + G S++ L+ + E+ TIA++ N +
Sbjct: 147 EGEIPRF------ALTVGQSLENDRDVLKILTSYRRVAGKDFGAELDQTIADMKTG-NYE 199
Query: 237 VAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGP 296
A F R + + + LI R G +++ + R +K+AA
Sbjct: 200 NALIRFETRIGSPMLSDVIRGLIGVLR-GDDQRMYFKMITFDMRQIEQNNLKKEAAKRPK 258
Query: 297 KL 298
K+
Sbjct: 259 KI 260
>gi|330465240|ref|YP_004402983.1| type II secretion system F domain-containing protein
[Verrucosispora maris AB-18-032]
gi|328808211|gb|AEB42383.1| Type II secretion system F domain-containing protein
[Verrucosispora maris AB-18-032]
Length = 252
Score = 47.6 bits (112), Expect = 0.003, Method: Composition-based stats.
Identities = 28/127 (22%), Positives = 61/127 (48%), Gaps = 6/127 (4%)
Query: 197 GISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQ 256
G +++++ VA+ +GG PL++++ L Q A+ + + +
Sbjct: 128 GAPVERSVIAVADALGG---PLADQLRRVGRTLQLGGLPQEAWAHLAE---VPGGQRIAT 181
Query: 257 ALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIG 316
A ++S G ++ +L L + R++R+ E A G + +P+ + FLP IL +
Sbjct: 182 AAVRSASSGAALAGALVRLADDLRADRVTTIEAAARRSGVLIVLPLGLCFLPAFILAGLV 241
Query: 317 PAILSII 323
P I++++
Sbjct: 242 PVIVAVL 248
>gi|312621767|ref|YP_004023380.1| hypothetical protein Calkro_0668 [Caldicellulosiruptor
kronotskyensis 2002]
gi|312202234|gb|ADQ45561.1| hypothetical protein Calkro_0668 [Caldicellulosiruptor
kronotskyensis 2002]
Length = 253
Score = 47.6 bits (112), Expect = 0.003, Method: Composition-based stats.
Identities = 37/221 (16%), Positives = 82/221 (37%), Gaps = 10/221 (4%)
Query: 108 RSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVW 167
R++ + L + +IF + G ++ +V + G VG P +
Sbjct: 39 RNKPKSFDYQNLALPLTVIFAVGGFLFARLVRA---EGLVAQVLLAVGFGIVGHELPKEY 95
Query: 168 ISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIA 227
+ +++ ++ + D + + +++G+S+D+ +AE I + L T A
Sbjct: 96 ----EKAQKNKLRSSISDIALMCELGLKAGLSLDRIFTVIAETI--VEPRYKDAFLQTAA 149
Query: 228 ELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEA 287
+ + F ++ + +AL++ ++ G S SL V ++ +
Sbjct: 150 TYKTTHDVEECFLILKGELEIRELEILKRALLEVEKVGLSGIQSLEVFAQVETMNKIEQI 209
Query: 288 EKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMKD 328
KK+ T M+ LI + P DT+
Sbjct: 210 YKKSDKARTYTTYAMVAMVF-ALISIYFFPLFKLATDTLNQ 249
>gi|86739493|ref|YP_479893.1| type II secretion system protein [Frankia sp. CcI3]
gi|86566355|gb|ABD10164.1| type II secretion system protein [Frankia sp. CcI3]
Length = 296
Score = 47.6 bits (112), Expect = 0.003, Method: Composition-based stats.
Identities = 33/182 (18%), Positives = 62/182 (34%), Gaps = 5/182 (2%)
Query: 108 RSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVW 167
RS L +R V P F+++ + ++ + A + + P
Sbjct: 35 RSTSDLLAQAGIRGVTPRQFVMISLGLGLLVGLVVLAFTETVSLAGAFVVFAS-LLPRAL 93
Query: 168 ISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIA 227
+ R+ ++ WPD +D L V +G+S+ + L V Q P
Sbjct: 94 VVRRRHARRHDLRELWPDVVDNLSSAVRAGMSLPEGLAAVGVRGPVQLRPA---FTRFGE 150
Query: 228 ELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRY-GTSIGDSLRVLVSETRSERLME 286
+ S + + + ++L + GT +G LR L + R +
Sbjct: 151 DYSATGSFSACLDRLADELADPVADRIIESLRMAREVGGTDLGRLLRTLSTFLREDARTR 210
Query: 287 AE 288
AE
Sbjct: 211 AE 212
>gi|171186311|ref|YP_001795230.1| type II secretion system protein [Thermoproteus neutrophilus
V24Sta]
gi|170935523|gb|ACB40784.1| type II secretion system protein [Thermoproteus neutrophilus
V24Sta]
Length = 262
Score = 47.2 bits (111), Expect = 0.003, Method: Composition-based stats.
Identities = 28/151 (18%), Positives = 61/151 (40%), Gaps = 3/151 (1%)
Query: 170 NLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAEL 229
+LV R+S + + L +LL + +G+ + +A+ R+AE ++ E+ L E+
Sbjct: 70 HLVSARRSHFENNFVYTLSVLLPLLAAGVPLGRAVTRLAE--VEDDRYIARELALAAREM 127
Query: 230 -SFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAE 288
+ + A N R R + L ++ R + L + + + A+
Sbjct: 128 VVMGSSPEEALRNSAARVPSPTYRETVEVLTKAARITQRVDLVLLARLDWMLRAKQVRAQ 187
Query: 289 KKAASLGPKLTVPMIIFFLPVLILVIIGPAI 319
SL V ++ L +++ I+ +
Sbjct: 188 SLVRSLSLMFEVFVVAVMLLPIMVYIVALSF 218
>gi|311743761|ref|ZP_07717567.1| type II secretion system protein [Aeromicrobium marinum DSM 15272]
gi|311312891|gb|EFQ82802.1| type II secretion system protein [Aeromicrobium marinum DSM 15272]
Length = 285
Score = 47.2 bits (111), Expect = 0.003, Method: Composition-based stats.
Identities = 24/110 (21%), Positives = 43/110 (39%), Gaps = 4/110 (3%)
Query: 180 KRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAF 239
+WPDA+D L V +G+S+ +A+ +V E L + + + + A
Sbjct: 106 AASWPDAVDNLASAVRAGMSLPEAVMQVGER---GPEVLRADFVAFGRDYRATGRFEEAL 162
Query: 240 ENFYNRTQMDCVRNATQALIQS-DRYGTSIGDSLRVLVSETRSERLMEAE 288
+ R ++L + D G +G LR L + R + E
Sbjct: 163 DLLKIRLADPVGDRVVESLRLARDVGGGDLGRMLRALSAYLRDDLRTRGE 212
>gi|297619916|ref|YP_003708021.1| Type II secretion system F domain-containing protein [Methanococcus
voltae A3]
gi|297378893|gb|ADI37048.1| Type II secretion system F domain protein [Methanococcus voltae A3]
Length = 354
Score = 47.2 bits (111), Expect = 0.003, Method: Composition-based stats.
Identities = 27/163 (16%), Positives = 60/163 (36%), Gaps = 11/163 (6%)
Query: 105 AGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAP 164
AG E L ++ ++ I + + +I + ILI P
Sbjct: 114 AGIDDER----LYFLKAIMTSIIVSVFLIVFETVFGNFIGGVLNGLTFFILIMLGSIFYP 169
Query: 165 SVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLL 224
+ ++ + + I + +L SG S+ ++++ +A++ S E
Sbjct: 170 KIKLTLFKGEIKIQILMTLLHIISML----NSGASVQESIKNIADNPEYGIP--SYEFRN 223
Query: 225 TIAELS-FLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGT 266
I +++ + + A E RT+++ ++ LI S G
Sbjct: 224 IIKDINNGGYSFEGALERARTRTKVNLMKELYSQLIISSSKGG 266
>gi|317123681|ref|YP_004097793.1| type II secretion system F domain [Intrasporangium calvum DSM
43043]
gi|315587769|gb|ADU47066.1| Type II secretion system F domain [Intrasporangium calvum DSM
43043]
Length = 211
Score = 47.2 bits (111), Expect = 0.003, Method: Composition-based stats.
Identities = 32/141 (22%), Positives = 57/141 (40%), Gaps = 9/141 (6%)
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVP----LSEEMLLTIAELSFLPNRQVAFEN 241
AL LL + SG+ L VA+ + P ++ ++ A L + + A+ +
Sbjct: 69 ALVLLALGYRSGLPTWNVLTAVADVLAQPEAPDGSAVTRDLRQVAAALRWGASDDEAWAS 128
Query: 242 FYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVP 301
+ A +A+ + R G G L E R L E AA +G +L P
Sbjct: 129 VG-----EVWTGAGRAVAIAHRAGIPPGPLLLSAADELRKASLERVELAAARVGVQLVAP 183
Query: 302 MIIFFLPVLILVIIGPAILSI 322
+ + LP L + P ++++
Sbjct: 184 LGLVLLPAFCLTTVVPLVMAL 204
>gi|227502475|ref|ZP_03932524.1| type II secretion system protein F [Corynebacterium accolens ATCC
49725]
gi|227076844|gb|EEI14807.1| type II secretion system protein F [Corynebacterium accolens ATCC
49725]
Length = 207
Score = 47.2 bits (111), Expect = 0.003, Method: Composition-based stats.
Identities = 28/136 (20%), Positives = 56/136 (41%), Gaps = 6/136 (4%)
Query: 187 LDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRT 246
++L C+ +G+++ A VA + L A L + A+++
Sbjct: 73 IELFAACLSAGLTVHAAATAVARTAEADTQHL---WETVSALLGVGVPTESAWDHMKGHA 129
Query: 247 QMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFF 306
++ V QS G +I + + R+E A KA G + +P+ + F
Sbjct: 130 GLEDVAGLVILSGQS---GATIAAGCTRICTSLRAEASAHATAKAERAGVFIALPLAVCF 186
Query: 307 LPVLILVIIGPAILSI 322
LP I++ + P ++S+
Sbjct: 187 LPAFIVLGLAPVVISL 202
>gi|305664053|ref|YP_003860341.1| Type II secretion system F domain [Ignisphaera aggregans DSM 17230]
gi|304378622|gb|ADM28461.1| Type II secretion system F domain [Ignisphaera aggregans DSM 17230]
Length = 297
Score = 47.2 bits (111), Expect = 0.004, Method: Composition-based stats.
Identities = 35/209 (16%), Positives = 74/209 (35%), Gaps = 6/209 (2%)
Query: 114 NILLVVRLVVPIIFLILGIIWIFGY--DKLLEYPFQLRVGAVILIGYVGFCAPSVWISNL 171
++ ++V L+ I + I++FG + L + + L+ + P + SN
Sbjct: 52 SLAMLVSLIAVFIISSIYTIYVFGIAIPIAITASAILSIATIFLVLAMVIAIPRIMYSN- 110
Query: 172 VQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSF 231
R ++ L + + SG+ I R+ +G S E+ +
Sbjct: 111 ---RSRILESKAILLLMAISLLSASGLDIYSVFERIPNILGESYKYFSIEIDRARYMVRA 167
Query: 232 LPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKA 291
F + T +R L R G +G + +++ S +E E+ A
Sbjct: 168 GIPIDKVFSDIARITPSQILRELFSGLSSFSRVGGDLGKVVEGVLTRYISRYELEVERIA 227
Query: 292 ASLGPKLTVPMIIFFLPVLILVIIGPAIL 320
+L + + I L +++ + L
Sbjct: 228 NTLSVYTEIYVAISLLIPVLIGSLAMIFL 256
>gi|326792821|ref|YP_004310642.1| hypothetical protein Clole_3764 [Clostridium lentocellum DSM 5427]
gi|326543585|gb|ADZ85444.1| hypothetical protein Clole_3764 [Clostridium lentocellum DSM 5427]
Length = 293
Score = 47.2 bits (111), Expect = 0.004, Method: Composition-based stats.
Identities = 33/283 (11%), Positives = 105/283 (37%), Gaps = 25/283 (8%)
Query: 48 VAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGF 107
V+ + + + L+K+ +++++ + + ++ L+ E +L+
Sbjct: 28 VSNKHKKRTRSHQKQLKKEKQAAKMKAIKRRIGKKYI------VYLLSEAERKRLKKMLE 81
Query: 108 R--SEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPS 165
R + + + + + + I I+ F + +L Y A +++ +G+ P
Sbjct: 82 RLDKDMTPEEVRLNQFLYA-GMAIAFSIFAFKVNTMLGY-------ACLILVVLGWLYPV 133
Query: 166 VWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLT 225
+ ++ + I +P ++ ++I A + + + ++ ++EE+
Sbjct: 134 DELEKTIELKNKYIANDFPAFYSMVYYQYSKTVNIFFA-DVIRDYLPNANIYMAEELGFM 192
Query: 226 IAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDS--LRVLVSETRSER 283
+ + F + + R + + + + ++ L+ + E R
Sbjct: 193 LDNIDFGE--EFVLKQLKKRVPLHYIIKFCDIMETRLKGYDNVSQMAYLKNELDEFRVRE 250
Query: 284 LMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
L +K K+ + +II + + + +I+++M
Sbjct: 251 LENELEKREKSNVKIQLVLIIVLGIYIFVYYLF----TIMESM 289
>gi|296132333|ref|YP_003639580.1| hypothetical protein TherJR_0812 [Thermincola sp. JR]
gi|296030911|gb|ADG81679.1| hypothetical protein TherJR_0812 [Thermincola potens JR]
Length = 290
Score = 47.2 bits (111), Expect = 0.004, Method: Composition-based stats.
Identities = 35/198 (17%), Positives = 73/198 (36%), Gaps = 21/198 (10%)
Query: 68 ASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIF 127
A S L R ++R +LNL + ++ + AG+ + L + L I
Sbjct: 17 AGSLLLDRKKSTVRR---QLNLVHYFGYSQVSDQAKDAGW--NITTKEFLAIVLFAIGIG 71
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
L+L +I+ ++ G+ P + ++ + ++ A PD
Sbjct: 72 LVLALIF-------------KNPLIIVAGVVAGYYLPRFIVQRYKKRERMALMVAIPDFA 118
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQ 247
+L+ + SI +A +D L++E + ++ Q+A EN +
Sbjct: 119 RILIARLVDHHSIVKAFEMTQKDCFEPMKTLAQEF---VKDVGVGIGVQLALENLKVKVS 175
Query: 248 MDCVRNATQALIQSDRYG 265
T+ L+ + + G
Sbjct: 176 YRKFNTFTETLLLAHQEG 193
>gi|261402628|ref|YP_003246852.1| Type II secretion system F domain protein [Methanocaldococcus
vulcanius M7]
gi|261369621|gb|ACX72370.1| Type II secretion system F domain protein [Methanocaldococcus
vulcanius M7]
Length = 562
Score = 47.2 bits (111), Expect = 0.004, Method: Composition-based stats.
Identities = 25/167 (14%), Positives = 65/167 (38%), Gaps = 8/167 (4%)
Query: 106 GFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPS 165
G + ++ + + L + ++ ++ I++ + + ++ G + P
Sbjct: 290 GIKMKFKWKPVHFITLFLWMLSIVFFILFFLRKSLFMFHGTDF-----LMFGILFLILPF 344
Query: 166 VWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLT 225
+ S ++ ++ +P L+ L + V SG+ I +A++ A+ PL++ +
Sbjct: 345 ILTSYWHFIIENQKEKYYPIFLNDLTMAVRSGMDIIRAMQVCAK---TNYGPLTKIVKKM 401
Query: 226 IAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSL 272
++S+ FE+ + + L + G I D L
Sbjct: 402 AIQMSWGRPVNEVFEDLERTEKSLIAKRIASILKECAVSGGDIKDIL 448
Score = 42.6 bits (99), Expect = 0.093, Method: Composition-based stats.
Identities = 41/242 (16%), Positives = 84/242 (34%), Gaps = 20/242 (8%)
Query: 93 LVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIW-----IFGYDKLLEYPFQ 147
+ DE L AG ++ V +P++FL I+ IF + Y
Sbjct: 6 IEDEKFDEILLKAGVKA--------VSSTYLPVVFLTAIIVGFILFIIFLIIFNILYAIF 57
Query: 148 LRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRV 207
+G V ++ VG P V L +++ SI P A + + I + + +
Sbjct: 58 ALIGGVFIVILVGVLYPYV----LAEEKAKSIDENLPYAFAFISALSSANIPVVEIFTSL 113
Query: 208 AEDIGGQSVPLSEEMLLTIAELS-FLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGT 266
+++ +SEE + + F + F T + + ++ S G
Sbjct: 114 SKE--DIYGGMSEEAKEIVKDTKVFNYDIITTFLRRARITPSKKLSSVYYNIVASLIVGA 171
Query: 267 SIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
+ + + +R +E + + +I + L +V+ P SI +
Sbjct: 172 EMKNIFHEIYDRLMEDRKLELLEAIEKVEILSEFYVIACGMIPLFVVMTVPVASSISAIL 231
Query: 327 KD 328
+
Sbjct: 232 QS 233
>gi|313140674|ref|ZP_07802867.1| conserved hypothetical protein [Bifidobacterium bifidum NCIMB
41171]
gi|313133184|gb|EFR50801.1| conserved hypothetical protein [Bifidobacterium bifidum NCIMB
41171]
Length = 171
Score = 47.2 bits (111), Expect = 0.004, Method: Composition-based stats.
Identities = 30/144 (20%), Positives = 59/144 (40%), Gaps = 7/144 (4%)
Query: 182 AWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFE- 240
+ P + LL + + SG+S+ ++L V E +GG L + + A+
Sbjct: 32 SLPLLIGLLSVSLRSGMSVTRSLEGVGEAVGGALGGGL---CAVADALHRGSSWKDAWNA 88
Query: 241 -NFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLT 299
+F + + + L S G S L + E+++ASL KL
Sbjct: 89 ADFGDYAETSAI--LRGVLEPSWTRGVSPIGPLTTASEQWMEGERTAIEQESASLSVKLL 146
Query: 300 VPMIIFFLPVLILVIIGPAILSII 323
+P + LP + + I P++++ +
Sbjct: 147 LPTGLCMLPAFVFLGILPSVMAFV 170
>gi|154508104|ref|ZP_02043746.1| hypothetical protein ACTODO_00597 [Actinomyces odontolyticus ATCC
17982]
gi|153797738|gb|EDN80158.1| hypothetical protein ACTODO_00597 [Actinomyces odontolyticus ATCC
17982]
Length = 425
Score = 47.2 bits (111), Expect = 0.004, Method: Composition-based stats.
Identities = 55/277 (19%), Positives = 103/277 (37%), Gaps = 15/277 (5%)
Query: 52 REILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEY 111
R + R + + + +AS L R S L + + L AI + L A R
Sbjct: 162 RRVERAPGVAASRVSAASVALACRFSHDLGAPLADV-LDAIGSAIDDAQALEEA--RRVA 218
Query: 112 SLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNL 171
+ L+ R++ + + + G Y +G + A +
Sbjct: 219 AAGPLMSARVLAALPLVGIACALALGASPWQFYMGGAAGRMCAFVGVAAWAAGVASCRRI 278
Query: 172 VQK-RQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELS 230
+ + R+ A DL+ + G +I +AL +A+ ++ + A L
Sbjct: 279 LARCRRVEEGIDGALACDLVASALACGAAIPRALDALADASTTEA------LTWAAASLR 332
Query: 231 FLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKK 290
A+E+ +R+ AL S GTS L + R RL++A+ +
Sbjct: 333 LGATWADAWEDTPE--WSHPLRD---ALEASWTSGTSPETLLARSAAWERRSRLVDAKAQ 387
Query: 291 AASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
A L +L P+ +FFLP + + I P + ++ +
Sbjct: 388 AEELSVRLVGPLGVFFLPAFLSLGIAPLLAHLVGGIG 424
>gi|239943093|ref|ZP_04695030.1| hypothetical protein SrosN15_19021 [Streptomyces roseosporus NRRL
15998]
gi|239989551|ref|ZP_04710215.1| hypothetical protein SrosN1_19781 [Streptomyces roseosporus NRRL
11379]
Length = 151
Score = 47.2 bits (111), Expect = 0.004, Method: Composition-based stats.
Identities = 30/134 (22%), Positives = 53/134 (39%), Gaps = 6/134 (4%)
Query: 193 CVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVR 252
CV G +A V IGG P+ + + T E+ ++ F +
Sbjct: 16 CVAVGAGPREAAEEVGRSIGG---PVGDRLARTAVEIRLGGEPADSWGRFGE---IPGAG 69
Query: 253 NATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLIL 312
+ L ++ G D + L + R+ER A +A G +T P+ + FLP +
Sbjct: 70 PLARCLYRAGSTGAPAADPIARLAASIRAERAAAAVARAQRAGVLITAPVGLCFLPAFLA 129
Query: 313 VIIGPAILSIIDTM 326
V + P I+ + +
Sbjct: 130 VGVAPVIIGLAGDL 143
>gi|119872897|ref|YP_930904.1| type II secretion system protein [Pyrobaculum islandicum DSM 4184]
gi|119674305|gb|ABL88561.1| type II secretion system protein [Pyrobaculum islandicum DSM 4184]
Length = 262
Score = 47.2 bits (111), Expect = 0.004, Method: Composition-based stats.
Identities = 28/148 (18%), Positives = 60/148 (40%), Gaps = 3/148 (2%)
Query: 170 NLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAEL 229
+LV R+S + + L +LL + +G+ + +A+ R+AE ++ E+ L E+
Sbjct: 70 HLVSARRSHFENNFVYTLSVLLPLLAAGVPLGRAVTRLAE--VEDDRYIARELALAAREM 127
Query: 230 -SFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAE 288
+ + A N R R + L ++ R + L + + + A+
Sbjct: 128 VVMGSSPEEALRNSAARVPSPTYRETVEVLTKAARITQRVDLVLLARLDWMLRAKQVRAQ 187
Query: 289 KKAASLGPKLTVPMIIFFLPVLILVIIG 316
SL V ++ L +++ I+
Sbjct: 188 SLVRSLSLMFEVFVVAVMLLPIMVYIVA 215
>gi|256396007|ref|YP_003117571.1| type II secretion system protein [Catenulispora acidiphila DSM
44928]
gi|256362233|gb|ACU75730.1| type II secretion system protein [Catenulispora acidiphila DSM
44928]
Length = 297
Score = 47.2 bits (111), Expect = 0.004, Method: Composition-based stats.
Identities = 36/226 (15%), Positives = 78/226 (34%), Gaps = 11/226 (4%)
Query: 82 NFVKKLNLKAILVDENIVNKLRAAGFRS-----EYSLNILLVVRLVVPIIFLIL-GIIWI 135
+F +L +A L AG R+ + + L + +I ++L +
Sbjct: 53 SFATRLGSRAAETL--TRAGLPQAGARANLVLLDREVLPFLAQKAGCAVIGVLLPAASFA 110
Query: 136 FGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVE 195
L+ P + A ++ V F P + ++ ++ +++ + A LD +
Sbjct: 111 TLTIVGLDLPLTIPALAAGVLAAVLFFVPDLALAAEAEEFRTAGRVAVRTFLDQAATTLA 170
Query: 196 SGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNAT 255
G I+QAL A+ G + + +T + L+ P + R + +
Sbjct: 171 GGAGIEQALVAAADGHGPVFRAIRD--SITDSRLAREPAWPH-LDALGKRLGIRELCELA 227
Query: 256 QALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVP 301
A + G + S+ R + + +L +P
Sbjct: 228 AACTLAGAEGAKVKSSIAAKARSMREREFAAQTEAVEADSERLAMP 273
>gi|314977797|gb|EFT21891.1| conserved hypothetical protein [Propionibacterium acnes HL045PA1]
Length = 297
Score = 46.8 bits (110), Expect = 0.004, Method: Composition-based stats.
Identities = 36/227 (15%), Positives = 84/227 (37%), Gaps = 8/227 (3%)
Query: 102 LRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRV--GAVILIGYV 159
+RAA + RL+ +I IL + + L + + +
Sbjct: 75 MRAALRLQGTTPEAFYGRRLICALIGAILPWLLNAVAIAVGANSPNLLIPSALCVALAGA 134
Query: 160 GFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLS 219
G+ P+ + A +DL+++ + + AL A PL
Sbjct: 135 GWMLPAARLKAAAGPTNDDSFEALLVFIDLVVLERLANETSVDALTNAAN---MSDSPLF 191
Query: 220 EEMLLTIAELSF-LPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSE 278
++ + S + + ++ + + + + G S+ DS R V+E
Sbjct: 192 VQIRQVLNRASLENVDPWNGLDRLAEDIKLPELTDVVS-IARLQNEGASLVDSFRARVAE 250
Query: 279 TRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDT 325
R L+ ++++ ++ +L + I+ ++L+++G A L++I
Sbjct: 251 LRDAYLLRLQQESTTITQRLGLWTIL-QAGSVMLILLGAAALTLITA 296
>gi|300933725|ref|ZP_07148981.1| hypothetical protein CresD4_06604 [Corynebacterium resistens DSM
45100]
Length = 377
Score = 46.8 bits (110), Expect = 0.004, Method: Composition-based stats.
Identities = 38/215 (17%), Positives = 78/215 (36%), Gaps = 16/215 (7%)
Query: 121 LVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVI--LIGYVGFCAPSVWISNLVQ----- 173
L +PI +ILG G + + ++ ++G G + +
Sbjct: 163 LALPIGAVILGQTMGLGTPQFFVRNPLGALLVLVGSVLGCAGVQWTEFLTRSQWKLVGGG 222
Query: 174 ------KRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIA 227
K+ LD+ ++ G+ ++A + + G + ++ +LT+
Sbjct: 223 SRAGPEKQVGLTSLDIARGLDIFTAALQVGLPTNRAWTVMVQHWGPDKLAEADRDVLTVG 282
Query: 228 ELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEA 287
L + + A++ V QAL Q+ R GT++ R EA
Sbjct: 283 HLLDMGDFAQAWKKLKAHVGFGPVAR--QALQQA-RSGTALSVGAGAQAQRLRQHANNEA 339
Query: 288 EKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
A + L P+ + FLP+ ++V + P + +
Sbjct: 340 TAAAEKMLVVLAAPLTLCFLPMFVVVGLLPLAIGL 374
>gi|284802132|ref|YP_003413997.1| hypothetical protein LM5578_1887 [Listeria monocytogenes 08-5578]
gi|284995274|ref|YP_003417042.1| hypothetical protein LM5923_1839 [Listeria monocytogenes 08-5923]
gi|284057694|gb|ADB68635.1| hypothetical protein LM5578_1887 [Listeria monocytogenes 08-5578]
gi|284060741|gb|ADB71680.1| hypothetical protein LM5923_1839 [Listeria monocytogenes 08-5923]
Length = 290
Score = 46.8 bits (110), Expect = 0.004, Method: Composition-based stats.
Identities = 29/193 (15%), Positives = 72/193 (37%), Gaps = 10/193 (5%)
Query: 126 IFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPD 185
F+ G I + LL +P V V+ + + + + ++ ++ I+ P
Sbjct: 94 AFVKCGAILLGVIPCLLVFPLLAPV--VVFLAVMIYFKETRKADEKLKVKRDEIENELPR 151
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
+ + ++ + L + + E+ + A++ + + A F R
Sbjct: 152 FVANVEQELK---NSRDVLSIIENFKKNAGAAFAGELDILAADMRS-SSYEAALTRFEAR 207
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKL---TVPM 302
+ + + LI R G ++L + + L + + +A + PK+ + M
Sbjct: 208 LNSPMLSDVVRGLIGVLR-GDDSAVYFQMLAHDFKQLELQKLKSEAQKIPPKIRVFSFIM 266
Query: 303 IIFFLPVLILVII 315
++ FL + +I
Sbjct: 267 LLCFLLTYLAIIA 279
>gi|306835047|ref|ZP_07468092.1| membrane protein [Corynebacterium accolens ATCC 49726]
gi|304569072|gb|EFM44592.1| membrane protein [Corynebacterium accolens ATCC 49726]
Length = 207
Score = 46.8 bits (110), Expect = 0.004, Method: Composition-based stats.
Identities = 28/136 (20%), Positives = 56/136 (41%), Gaps = 6/136 (4%)
Query: 187 LDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRT 246
++L C+ +G+++ A VA + L A L + A+++
Sbjct: 73 IELFAACLSAGLTVHAAATAVARTAEADTQHL---WETVSALLGVGVPTESAWDHMKGHA 129
Query: 247 QMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFF 306
++ V QS G +I + + R+E A KA G + +P+ + F
Sbjct: 130 GLEDVAGLVILSGQS---GATIAAGCTRICTSLRAEASAHATAKAERAGVFIALPLAVCF 186
Query: 307 LPVLILVIIGPAILSI 322
LP I++ + P ++S+
Sbjct: 187 LPAFIVLGLAPVVISL 202
>gi|314932289|gb|EFS96120.1| conserved hypothetical protein [Propionibacterium acnes HL067PA1]
Length = 297
Score = 46.8 bits (110), Expect = 0.004, Method: Composition-based stats.
Identities = 36/227 (15%), Positives = 84/227 (37%), Gaps = 8/227 (3%)
Query: 102 LRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRV--GAVILIGYV 159
+RAA + RL+ +I IL + + L + + +
Sbjct: 75 MRAALRLQGTTPEAFYGRRLICALIGAILPWLLNAVAIAVGANSPNLLIPSALCVALAGA 134
Query: 160 GFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLS 219
G+ P+ + A +DL+++ + + AL A PL
Sbjct: 135 GWMLPAARLKAAAGPTNDDSFEALLVFIDLVVLERLANETSVDALTNAAN---MSDSPLF 191
Query: 220 EEMLLTIAELSF-LPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSE 278
++ + S + + ++ + + + + G S+ DS R V+E
Sbjct: 192 VQIRQVLNRASLENVDPWNGLDRLAEDIKLPELTDVVS-IARLQNEGASLVDSFRARVAE 250
Query: 279 TRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDT 325
R L+ ++++ ++ +L + I+ ++L+++G A L++I
Sbjct: 251 LRDAYLLRLQQESTTITQRLGLWTIL-QAGSVMLILLGAAALTLITA 296
>gi|149174468|ref|ZP_01853094.1| General secretory pathway protein F [Planctomyces maris DSM 8797]
gi|148846578|gb|EDL60915.1| General secretory pathway protein F [Planctomyces maris DSM 8797]
Length = 401
Score = 46.8 bits (110), Expect = 0.004, Method: Composition-based stats.
Identities = 22/155 (14%), Positives = 63/155 (40%), Gaps = 10/155 (6%)
Query: 172 VQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSF 231
+ +++ ++ + + I V++G+ + AL +++ I + L+E + +
Sbjct: 54 IAQKKRVPRKEIIYFTNQMAIMVDAGVPVATALEGISKQIE--NPVLAEILAHIQKSVES 111
Query: 232 LPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKA 291
+ A +F + R + S+ GT + L + ++ E+ + K
Sbjct: 112 GSDFSAALADFPRQFD----RTYVNLIKASEASGT-MPQMLNRIAAQAEEEQETIQQVKG 166
Query: 292 ASLGPKLTVPMIIFFLPVLILVI-IGPAILSIIDT 325
A + P + + M + + L+ + P ++ + +
Sbjct: 167 ALMYPAIMLVMCVGI--CIFLLTYVFPKLMPMFAS 199
>gi|315081087|gb|EFT53063.1| conserved hypothetical protein [Propionibacterium acnes HL078PA1]
Length = 297
Score = 46.8 bits (110), Expect = 0.004, Method: Composition-based stats.
Identities = 36/227 (15%), Positives = 84/227 (37%), Gaps = 8/227 (3%)
Query: 102 LRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRV--GAVILIGYV 159
+RAA + RL+ +I IL + + L + + +
Sbjct: 75 MRAALRLQGTTPEAFYGRRLICALIGAILPWLLNAVAIAVGANSPNLLIPSALCVALAGA 134
Query: 160 GFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLS 219
G+ P+ + A +DL+++ + + AL A PL
Sbjct: 135 GWMLPAARLKAAAGPTNDDSFEALLVFIDLVVLERLANETSVDALTNAAN---MSDSPLF 191
Query: 220 EEMLLTIAELSF-LPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSE 278
++ + S + + ++ + + + + G S+ DS R V+E
Sbjct: 192 VQIRQVLNRASLENVDPWNGLDRLAEDIKLPELTDVVS-IARLQNEGASLVDSFRARVAE 250
Query: 279 TRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDT 325
R L+ ++++ ++ +L + I+ ++L+++G A L++I
Sbjct: 251 LRDAYLLRLQQESTAITQRLGLWTIL-QAGSVMLILLGAAALTLITA 296
>gi|111021318|ref|YP_704290.1| hypothetical protein RHA1_ro04342 [Rhodococcus jostii RHA1]
gi|110820848|gb|ABG96132.1| conserved hypothetical protein [Rhodococcus jostii RHA1]
Length = 196
Score = 46.8 bits (110), Expect = 0.004, Method: Composition-based stats.
Identities = 30/135 (22%), Positives = 56/135 (41%), Gaps = 6/135 (4%)
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQ 247
DLL C+ +G+ + A + V+ PLSE + LS + A +
Sbjct: 58 DLLAACLRAGLPVATAAQAVS---RTAPAPLSESLRRAADLLSLGADAATA---WEAAAS 111
Query: 248 MDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFL 307
+ + +S G+S+ S+ L ++ R + A A G ++ P+ + FL
Sbjct: 112 DPATESLARMARRSAASGSSLAGSMTELAADGRIQVEHLAAAAAERAGVLISGPLGLCFL 171
Query: 308 PVLILVIIGPAILSI 322
P I + I P ++ +
Sbjct: 172 PAFICLGIIPVVVGL 186
>gi|302387445|ref|YP_003823267.1| hypothetical protein Closa_3111 [Clostridium saccharolyticum WM1]
gi|302198073|gb|ADL05644.1| conserved hypothetical protein [Clostridium saccharolyticum WM1]
Length = 289
Score = 46.8 bits (110), Expect = 0.004, Method: Composition-based stats.
Identities = 29/195 (14%), Positives = 77/195 (39%), Gaps = 10/195 (5%)
Query: 131 GIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLL 190
G+I + +P + V V+ +G + + + + +++S+++ P + +
Sbjct: 98 GVILLLAIPAGFIFPLLVPV--VVFLGVMVYFKETKKADEKLSAKRASVEKELPRFVANI 155
Query: 191 LICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDC 250
+++ + L + + E+ + A++ + + A F R
Sbjct: 156 EQELKASRDV---LAIIENYKKNAGEAFASELTMLAADMRS-SSYEAALTRFEARLNSPM 211
Query: 251 VRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKL---TVPMIIFFL 307
+ + + LI R G ++L + + L + + +A + PK+ + M++ FL
Sbjct: 212 LSDVVRGLIGVLR-GDDSTVYFQMLAHDFKQLELQKLKGEAQKIPPKIRVFSFLMLMCFL 270
Query: 308 PVLILVIIGPAILSI 322
+ +I I S+
Sbjct: 271 FTYLAIIAYEIIKSL 285
>gi|312138012|ref|YP_004005348.1| type ii secretion system integral membrane subunit [Rhodococcus
equi 103S]
gi|311887351|emb|CBH46662.1| putative type II secretion system integral membrane subunit
[Rhodococcus equi 103S]
Length = 199
Score = 46.8 bits (110), Expect = 0.005, Method: Composition-based stats.
Identities = 27/135 (20%), Positives = 56/135 (41%), Gaps = 6/135 (4%)
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQ 247
DLL C+++G+ VA PL E + T L+ + A++ +
Sbjct: 61 DLLAACLKAGL---PVPDAVAAVAASAPDPLGESLRRTADRLALGADPATAWDVVASEPA 117
Query: 248 MDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFL 307
+ + + +S R G ++ ++ L ++ R+E A G + P+ + FL
Sbjct: 118 TEALARMAR---RSARSGAALSSAMADLATQQRTEAEDRAIAAVEKAGVLIGGPLGLCFL 174
Query: 308 PVLILVIIGPAILSI 322
P + + I P ++ +
Sbjct: 175 PAFVCLGIVPVVIGL 189
>gi|314957235|gb|EFT01339.1| conserved hypothetical protein [Propionibacterium acnes HL027PA1]
Length = 228
Score = 46.8 bits (110), Expect = 0.005, Method: Composition-based stats.
Identities = 36/227 (15%), Positives = 84/227 (37%), Gaps = 8/227 (3%)
Query: 102 LRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRV--GAVILIGYV 159
+RAA + RL+ +I IL + + L + + +
Sbjct: 6 MRAALRLQGTTPEAFYGRRLICALIGAILPWLLNAVAIAVGANSPNLLIPSALCVALAGA 65
Query: 160 GFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLS 219
G+ P+ + A +DL+++ + + AL A PL
Sbjct: 66 GWMLPAARLKAAAGPTNDDSFEALLVFIDLVVLERLANETSVDALTNAAN---MSDSPLF 122
Query: 220 EEMLLTIAELSFL-PNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSE 278
++ + S + + ++ + + + + G S+ DS R V+E
Sbjct: 123 VQIRQVLNRASLENVDPWNGLDRLAEDIKLPELTDVVS-IARLQNEGASLVDSFRARVAE 181
Query: 279 TRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDT 325
R L+ ++++ ++ +L + I+ ++L+++G A L++I
Sbjct: 182 LRDAYLLRLQQESTAITQRLGLWTIL-QAGSVMLILLGAAALTLITA 227
>gi|314974319|gb|EFT18415.1| conserved hypothetical protein [Propionibacterium acnes HL053PA1]
gi|314980647|gb|EFT24741.1| conserved hypothetical protein [Propionibacterium acnes HL072PA2]
gi|315090038|gb|EFT62014.1| conserved hypothetical protein [Propionibacterium acnes HL072PA1]
gi|315096613|gb|EFT68589.1| conserved hypothetical protein [Propionibacterium acnes HL038PA1]
gi|327325749|gb|EGE67544.1| membrane associated protein [Propionibacterium acnes HL096PA2]
gi|327330163|gb|EGE71913.1| membrane associated protein [Propionibacterium acnes HL096PA3]
gi|327333257|gb|EGE74978.1| membrane associated protein [Propionibacterium acnes HL097PA1]
gi|327443398|gb|EGE90052.1| hypothetical protein HMPREF9570_02379 [Propionibacterium acnes
HL043PA1]
gi|327447490|gb|EGE94144.1| hypothetical protein HMPREF9571_01040 [Propionibacterium acnes
HL043PA2]
gi|327456789|gb|EGF03444.1| hypothetical protein HMPREF9581_00006 [Propionibacterium acnes
HL087PA3]
gi|328760173|gb|EGF73748.1| membrane associated protein [Propionibacterium acnes HL099PA1]
Length = 297
Score = 46.8 bits (110), Expect = 0.005, Method: Composition-based stats.
Identities = 36/227 (15%), Positives = 84/227 (37%), Gaps = 8/227 (3%)
Query: 102 LRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRV--GAVILIGYV 159
+RAA + RL+ +I IL + + L + + +
Sbjct: 75 MRAALRLQGTTPEAFYGRRLICALIGAILPWLLNAVAIAVGANSPNLLIPSALCVALAGA 134
Query: 160 GFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLS 219
G+ P+ + A +DL+++ + + AL A PL
Sbjct: 135 GWMLPAARLKAAAGPTNDDSFEALLVFIDLVVLERLANETSVDALTNAAN---MSDSPLF 191
Query: 220 EEMLLTIAELSFL-PNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSE 278
++ + S + + ++ + + + + G S+ DS R V+E
Sbjct: 192 VQIRQVLNRASLENVDPWNGLDRLAEDIKLPELTDVVS-IARLQNEGASLVDSFRARVAE 250
Query: 279 TRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDT 325
R L+ ++++ ++ +L + I+ ++L+++G A L++I
Sbjct: 251 LRDAYLLRLQQESTAITQRLGLWTIL-QAGSVMLILLGAAALTLITA 296
>gi|86742016|ref|YP_482416.1| type II secretion system protein [Frankia sp. CcI3]
gi|86568878|gb|ABD12687.1| type II secretion system protein [Frankia sp. CcI3]
Length = 294
Score = 46.8 bits (110), Expect = 0.005, Method: Composition-based stats.
Identities = 20/147 (13%), Positives = 44/147 (29%), Gaps = 4/147 (2%)
Query: 123 VPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRA 182
+ ++ + G+ + P + GF + R+ + A
Sbjct: 92 LLVVVSATVGLAAVGWASGIVLPATTLPLGCVAAVPFGFVWADRPLHRRASARRQETRLA 151
Query: 183 WPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVA-FEN 241
LDL+ I + G+S+ AL+ A+ G + E+ + A
Sbjct: 152 VAAYLDLVRILLVGGLSLHTALQTAADAGRGWAFT---EIRAALQWARARHVPPDAGLNR 208
Query: 242 FYNRTQMDCVRNATQALIQSDRYGTSI 268
R + + + R + +
Sbjct: 209 LAVRVPVAEFAELRLTVSSALRGASPV 235
>gi|119715779|ref|YP_922744.1| type II secretion system protein [Nocardioides sp. JS614]
gi|119536440|gb|ABL81057.1| type II secretion system protein [Nocardioides sp. JS614]
Length = 300
Score = 46.8 bits (110), Expect = 0.005, Method: Composition-based stats.
Identities = 46/308 (14%), Positives = 110/308 (35%), Gaps = 17/308 (5%)
Query: 18 ITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDS 77
+ + +L++A + +L AV R + + T +Q+ A T S
Sbjct: 6 LAAGLVAVALLHAYRLAVPPRADLAG-----AVRRWDSARARQTRIQRIGAP--RATTVS 58
Query: 78 KSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFG 137
+++++ L+ + + L G S+ + + ++ ++ +
Sbjct: 59 GRIQSWLSDQVLRRTKDVKGLTQDLAVTG----GSVEQYVGKTTTLALLGFFGPLVILGS 114
Query: 138 YDKL-LEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVES 196
++ + L P A L+ + + +KR++ +R LDL+ + +++
Sbjct: 115 FNAIGLGIPLVFGPAAGALLAAAMLVVTRQELMDKAKKRRAEFRRTLSVYLDLVAMSMQA 174
Query: 197 GISIDQAL-RRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNAT 255
G +AL A G L + + A +R + + +
Sbjct: 175 GRGHSEALPASAAIGTGWAFTHLQDAIDGARF---SGTTPWHALGQLGDRFGIRELTDLD 231
Query: 256 QALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVII 315
AL ++ G + +L R+ER+ +AE AA + +I+ + +
Sbjct: 232 SALTLANEDGAKVRATLVARAETLRAERIADAEAAAAQATESMRFALIVMVF-AFLTYEL 290
Query: 316 GPAILSII 323
P++ +
Sbjct: 291 YPSVARLF 298
>gi|325675225|ref|ZP_08154910.1| bacterial type II secretion system protein F domain protein
[Rhodococcus equi ATCC 33707]
gi|325553931|gb|EGD23608.1| bacterial type II secretion system protein F domain protein
[Rhodococcus equi ATCC 33707]
Length = 198
Score = 46.4 bits (109), Expect = 0.005, Method: Composition-based stats.
Identities = 27/135 (20%), Positives = 56/135 (41%), Gaps = 6/135 (4%)
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQ 247
DLL C+++G+ VA PL E + T L+ + A++ +
Sbjct: 60 DLLAACLKAGL---PVPDAVAAVAASAPDPLGESLRRTADRLALGADPATAWDVVASEPA 116
Query: 248 MDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFL 307
+ + + +S R G ++ ++ L ++ R+E A G + P+ + FL
Sbjct: 117 TEALARMAR---RSARSGAALSSAMADLATQQRTEAEDRAIAAVEKAGVLIGGPLGLCFL 173
Query: 308 PVLILVIIGPAILSI 322
P + + I P ++ +
Sbjct: 174 PAFVCLGIVPVVIGL 188
>gi|228968943|ref|ZP_04129891.1| Hypothetical membrane protein [Bacillus thuringiensis serovar sotto
str. T04001]
gi|228790750|gb|EEM38403.1| Hypothetical membrane protein [Bacillus thuringiensis serovar sotto
str. T04001]
Length = 243
Score = 46.4 bits (109), Expect = 0.005, Method: Composition-based stats.
Identities = 39/220 (17%), Positives = 79/220 (35%), Gaps = 12/220 (5%)
Query: 109 SEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWI 168
S + ++ +L II ++ IF L F L ++ +GF +
Sbjct: 30 SSLTPMEFIISKLTFSIINFLVIASLIFYVPDLKIVIFPL----ALVFAVMGFYVKESKL 85
Query: 169 SNLVQKRQSSIKRAWPDALDLLLICVESG-ISIDQALRRVAEDIGGQSVPLSEEMLLTIA 227
++ V+ +Q ++ P+ ++ + G + +A +R E PL + + IA
Sbjct: 86 NSNVKAKQLRMQLELPEY--MISLAYMIGRYTAYEATKRSIEYASDNLRPLVDNL---IA 140
Query: 228 ELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIG-DSLRVLVSETRSERLME 286
++ P + F + AL Q+ S + + + R R
Sbjct: 141 QIELEPGNFEPYLEFAREVDIPAAYQFMVALQQAMVMDESQSREIINNQIKLMRRLRAES 200
Query: 287 AEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
E AS + +I +I+ +IG + SI +
Sbjct: 201 YETLVASRPG-MVFKYLISTYLCIIVFVIGFSFTSIYEKF 239
>gi|224283519|ref|ZP_03646841.1| Flp pilus assembly protein [Bifidobacterium bifidum NCIMB 41171]
Length = 182
Score = 46.4 bits (109), Expect = 0.005, Method: Composition-based stats.
Identities = 30/144 (20%), Positives = 59/144 (40%), Gaps = 7/144 (4%)
Query: 182 AWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFE- 240
+ P + LL + + SG+S+ ++L V E +GG L + + A+
Sbjct: 43 SLPLLIGLLSVSLRSGMSVTRSLEGVGEAVGGALGGGL---CAVADALHRGSSWKDAWNA 99
Query: 241 -NFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLT 299
+F + + + L S G S L + E+++ASL KL
Sbjct: 100 ADFGDYAETSAI--LRGVLEPSWTRGVSPIGPLTTASEQWMEGERTAIEQESASLSVKLL 157
Query: 300 VPMIIFFLPVLILVIIGPAILSII 323
+P + LP + + I P++++ +
Sbjct: 158 LPTGLCMLPAFVFLGILPSVMAFV 181
>gi|308178276|ref|YP_003917682.1| hypothetical protein AARI_24940 [Arthrobacter arilaitensis Re117]
gi|307745739|emb|CBT76711.1| hypothetical membrane protein [Arthrobacter arilaitensis Re117]
Length = 178
Score = 46.4 bits (109), Expect = 0.005, Method: Composition-based stats.
Identities = 33/193 (17%), Positives = 62/193 (32%), Gaps = 26/193 (13%)
Query: 146 FQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRA------WPDALDLLLICVESGIS 199
+ + + P+ W + + R I R LDL ++SG+
Sbjct: 1 MIILILLCGALAIALAMDPANWKNQAARARHRVIGRGRAQENPIELILDLSASLLDSGMP 60
Query: 200 IDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFE-NFYNRTQMDCVRNATQAL 258
I Q L + I + + L + E N + V L
Sbjct: 61 ITQILDLLGNSIE---------------QCAVLRSVARCLEMNMAWDKAWEAVPGWLMPL 105
Query: 259 IQSDRY----GTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVI 314
++ + G LR R E + + A G +L +P+ LP I +
Sbjct: 106 RKALHFAHATGAPAASLLRNTAILQRREHTQKVARLGAQFGTRLVLPLGACALPAFIALG 165
Query: 315 IGPAILSIIDTMK 327
+ P I+++ + +
Sbjct: 166 VVPLIIALFPSFQ 178
>gi|225022297|ref|ZP_03711489.1| hypothetical protein CORMATOL_02336 [Corynebacterium matruchotii
ATCC 33806]
gi|224944894|gb|EEG26103.1| hypothetical protein CORMATOL_02336 [Corynebacterium matruchotii
ATCC 33806]
Length = 96
Score = 46.4 bits (109), Expect = 0.005, Method: Composition-based stats.
Identities = 14/91 (15%), Positives = 35/91 (38%), Gaps = 3/91 (3%)
Query: 232 LPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKA 291
+ A+ + + ++ S G + + + + R + A +A
Sbjct: 1 GVDADRAWRELAQAPGLGELAALARS---SHHSGAGLSNGCSRIAARLRDDGADHATAEA 57
Query: 292 ASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
G + +PM + +LP L+ + P ++S+
Sbjct: 58 ERAGVLIALPMTLCYLPAFFLLGLAPMVISL 88
>gi|269955644|ref|YP_003325433.1| type II secretion system protein [Xylanimonas cellulosilytica DSM
15894]
gi|269304325|gb|ACZ29875.1| type II secretion system protein [Xylanimonas cellulosilytica DSM
15894]
Length = 289
Score = 46.4 bits (109), Expect = 0.005, Method: Composition-based stats.
Identities = 30/159 (18%), Positives = 59/159 (37%), Gaps = 9/159 (5%)
Query: 144 YPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQA 203
+ F V AV++ PS+ + + R + ++ A + L + +G+ ++QA
Sbjct: 68 WAFTHWVLAVVVAPIAALGLPSLLTAAPAKARIARLE-ALEEWTRSLSGVLVAGVGLEQA 126
Query: 204 LRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQS-D 262
L + L ++ L A L+ + + A F + LI +
Sbjct: 127 L---VSTLRSAPTVLEPQLRLLTARLNARWSTEAALRAFADDLDDATGDLVAANLILAAR 183
Query: 263 RYGTSIGDSLRVLVS----ETRSERLMEAEKKAASLGPK 297
R G + L L + RS R +EA++ +
Sbjct: 184 RRGAGLATVLASLADSVAADVRSRRQIEADRAKPRATAR 222
>gi|254168618|ref|ZP_04875461.1| Bacterial type II secretion system protein F domain
[Aciduliprofundum boonei T469]
gi|289595685|ref|YP_003482381.1| Type II secretion system F domain protein [Aciduliprofundum boonei
T469]
gi|197622452|gb|EDY35024.1| Bacterial type II secretion system protein F domain
[Aciduliprofundum boonei T469]
gi|289533472|gb|ADD07819.1| Type II secretion system F domain protein [Aciduliprofundum boonei
T469]
Length = 332
Score = 46.4 bits (109), Expect = 0.006, Method: Composition-based stats.
Identities = 32/225 (14%), Positives = 85/225 (37%), Gaps = 11/225 (4%)
Query: 107 FRSEYSLNILLVVRLVVPIIFLILGIIWIF-----GYDKLLEYPFQLRVGAVILIGYVGF 161
R + L + L+V +I +++ + + G + + + +++I + +
Sbjct: 73 LRPQEYLAYVYFTTLLVGVIGIVMAAMLVLMGLSLGNKMITILFLLIGIFMMVIIPIMTY 132
Query: 162 CAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEE 221
+ ++ +KR I P A++ + + +++ + ++ + +++E
Sbjct: 133 FSLISSPASKAKKRAKDIDTHLPTAVNFIAALSSADVTVASIFKELST--RKEYGEIAKE 190
Query: 222 MLLTIAELSF-LPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETR 280
+ + A E R+ + Q +I + G + E
Sbjct: 191 AEWITRDTELLGKDILTAIEEASRRSPSVKWQEFLQGVITTATSGGRLKPFFMSKSEEYE 250
Query: 281 SERLMEAEKKAASLGPKL-TVPMIIFFLPVLILVIIGPAILSIID 324
E+ + +K SLG + P+ ++VII AI+++I+
Sbjct: 251 KEKRLMLKKNMESLGLFAEIYVTVGVAFPLFLVVII--AIMALIN 293
>gi|303244717|ref|ZP_07331048.1| Type II secretion system F domain protein [Methanothermococcus
okinawensis IH1]
gi|302484931|gb|EFL47864.1| Type II secretion system F domain protein [Methanothermococcus
okinawensis IH1]
Length = 295
Score = 46.4 bits (109), Expect = 0.006, Method: Composition-based stats.
Identities = 35/220 (15%), Positives = 85/220 (38%), Gaps = 24/220 (10%)
Query: 102 LRAAGFR--SEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYV 159
L+ AG + I++ + ++PI+ ++ + V ++L
Sbjct: 19 LKRAGINLNEKSYFIIVVFLSFILPIVL-----------KYIMHLSSKSTVILIVLYSLS 67
Query: 160 GFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLS 219
PS+ + ++K +R P AL ++++ +ESG S+ A+ V + +
Sbjct: 68 ILSIPSIMYESKIEK----FERNLPKALYVMILSLESGRSVIDAINEVINSGIKEVDVIF 123
Query: 220 EEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLV--- 276
+++ + E + + + N R + +I++ ++G + + L+ L
Sbjct: 124 LKIVALMTEKKL--SFEDSIILVSNSIDSKIFRQIGRLIIENRKHGGELAEVLKTLAKTL 181
Query: 277 SETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIG 316
+ ++ + A L L + I +P +I G
Sbjct: 182 EDLQNLKNQLLSVTANGLAVGLII--ICGVIPATAGIIGG 219
>gi|15669474|ref|NP_248284.1| hypothetical protein MJ_1286 [Methanocaldococcus jannaschii DSM
2661]
gi|3025058|sp|Q58682|Y1286_METJA RecName: Full=Uncharacterized protein MJ1286
gi|1591923|gb|AAB99288.1| conserved hypothetical protein [Methanocaldococcus jannaschii DSM
2661]
Length = 595
Score = 46.4 bits (109), Expect = 0.006, Method: Composition-based stats.
Identities = 35/213 (16%), Positives = 73/213 (34%), Gaps = 23/213 (10%)
Query: 116 LLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKR 175
++ ++ ++F I I+ F L + + IL Y F
Sbjct: 341 FWMLSIISFMLFFIRKSIFKFHGTDFLMFGILFLILPFILTSYWHFII------------ 388
Query: 176 QSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNR 235
++ +R +P L+ L + V SG+ I +A++ A PL++ + ++S+
Sbjct: 389 ENQKERYYPIFLNDLTMAVRSGMDIIRAMQVCA---RTNYGPLTKIVKKMAIQMSWGRPV 445
Query: 236 QVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLG 295
F + + + L + G + D L + M+ E A
Sbjct: 446 NEVFADLERTEKSLIAKRIASILKECAVSGGDVKDILTSVTVHAYKLSEMKREISARQ-- 503
Query: 296 PKLTVPMIIFFLPVLILVIIGPAIL--SIIDTM 326
++ L I I+ S++ T+
Sbjct: 504 ----FIYVVVIYLSFFLYIGTSYIMVHSLLPTL 532
>gi|134046667|ref|YP_001098152.1| type II secretion system protein [Methanococcus maripaludis C5]
gi|132664292|gb|ABO35938.1| type II secretion system protein [Methanococcus maripaludis C5]
Length = 352
Score = 46.4 bits (109), Expect = 0.006, Method: Composition-based stats.
Identities = 32/163 (19%), Positives = 65/163 (39%), Gaps = 11/163 (6%)
Query: 105 AGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAP 164
AG E + + ++V I +IL I++ ++ + AVI++ G P
Sbjct: 112 AGIADER---VYFLKMMIVAISVIILFILYGILIGNIISSFLNGALLAVIVV-IGGIFYP 167
Query: 165 SVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLL 224
+ ++ + + + + + +L SG SI ++L+ +A + + S E
Sbjct: 168 KLKLTLFRGEIKIQVLMSILHLISML----NSGASIQESLKNIANN--PEYGITSFEFRS 221
Query: 225 TIAEL-SFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGT 266
I ++ N A E RT++ +R LI + G
Sbjct: 222 VIKDINQGGYNFVEALERAKLRTKIFIMRQLYDQLILAANKGG 264
>gi|154148351|ref|YP_001406609.1| type II secretion system protein [Campylobacter hominis ATCC
BAA-381]
gi|153804360|gb|ABS51367.1| type II secretion system protein [Campylobacter hominis ATCC
BAA-381]
Length = 413
Score = 46.0 bits (108), Expect = 0.007, Method: Composition-based stats.
Identities = 23/142 (16%), Positives = 50/142 (35%), Gaps = 10/142 (7%)
Query: 187 LDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRT 246
+ L + +GISI +++ VA + L E +L+ + A E F ++
Sbjct: 78 IRQLAVMTNAGISIHDSIKEVAN--STEDKALKEIFASINDDLNSGLSMTEASEKFRSKL 135
Query: 247 QMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSE-RLMEAEKKAASLGPKLTVPMIIF 305
+ A+I ++ +SL L KKA + + +
Sbjct: 136 G-----DVVIAMISLGESTGNMAESLSKLAQMLNEVWENQRKFKKAMRYP--MVIMTALA 188
Query: 306 FLPVLILVIIGPAILSIIDTMK 327
++++ + P I + +
Sbjct: 189 IAFTVLMMYVVPKFREIFEELG 210
>gi|297619917|ref|YP_003708022.1| Type II secretion system F domain-containing protein [Methanococcus
voltae A3]
gi|297378894|gb|ADI37049.1| Type II secretion system F domain protein [Methanococcus voltae A3]
Length = 294
Score = 46.0 bits (108), Expect = 0.007, Method: Composition-based stats.
Identities = 30/205 (14%), Positives = 84/205 (40%), Gaps = 9/205 (4%)
Query: 125 IIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWP 184
+I ++L + L + + + + + PS+ N + K ++ P
Sbjct: 31 LIAILLTSFIPLIFKIFLNFTIKSTLILTFMYLFSLMVIPSILYENKIDK----FEKNLP 86
Query: 185 DALDLLLICVESGISIDQALRRVAE-DIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFY 243
AL ++++ + SG S+ +++ + DI ++ S+ +LL +E + + +
Sbjct: 87 KALYIMVLSLNSGRSVIESINEIINSDIKEVNIAFSKIILLM-SERKL--SFEDSVLIVS 143
Query: 244 NRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMI 303
N + + +I++ +YG ++ +SL L ++ + + + +I
Sbjct: 144 NSLDSKLFKQLGRLIIENRKYGGNLAESLNTLAKTLEDLTNLKNQLLSVASNGLSVGIII 203
Query: 304 IFFLPVLILVIIGPAILSIIDTMKD 328
+ + ++G + L++I +
Sbjct: 204 LCIMIPATAGLVG-SFLNLISAISS 227
>gi|309802084|ref|ZP_07696194.1| conserved hypothetical protein [Bifidobacterium dentium JCVIHMP022]
gi|308221285|gb|EFO77587.1| conserved hypothetical protein [Bifidobacterium dentium JCVIHMP022]
Length = 145
Score = 46.0 bits (108), Expect = 0.007, Method: Composition-based stats.
Identities = 34/141 (24%), Positives = 56/141 (39%), Gaps = 9/141 (6%)
Query: 183 WPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENF 242
P L++L + + G SI AL V +GG E + L+ + A+ +
Sbjct: 13 MPLVLEMLAVAIRRGASIPHALIVVGRIVGG---DFGEGLSSVGGALNQGVDWDQAWPS- 68
Query: 243 YNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPM 302
D + S G S + L + + + + E+ AA L +L +P
Sbjct: 69 -----GDDIALVRDVFAASWSSGASPLNRLDAAIEQLDWDERSQIERDAAKLSIRLLLPT 123
Query: 303 IIFFLPVLILVIIGPAILSII 323
+ FLP I V + PAI S +
Sbjct: 124 GLCFLPAFIAVGVIPAIASFL 144
>gi|323702301|ref|ZP_08113967.1| Type II secretion system F domain [Desulfotomaculum nigrificans DSM
574]
gi|323532791|gb|EGB22664.1| Type II secretion system F domain [Desulfotomaculum nigrificans DSM
574]
Length = 409
Score = 46.0 bits (108), Expect = 0.008, Method: Composition-based stats.
Identities = 26/153 (16%), Positives = 58/153 (37%), Gaps = 8/153 (5%)
Query: 175 RQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPN 234
R+ + + +GI I QAL +A +S L E + + +L
Sbjct: 62 RKKVKIKELAVFCRQFATIIAAGIPILQALNILAR--QAESRRLRETITGVVEQLESGRT 119
Query: 235 RQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASL 294
+ + + + N ++I++ G + +L L E + + K+A
Sbjct: 120 LAESLKRYRDVFP-----NIFISMIEAGEVGGVLDKALTRLADHFEKEHDIREKIKSAMT 174
Query: 295 GPKLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
P L + + I + L+ ++ P + +++ M
Sbjct: 175 YPVLIICLAICAVTALLTFVL-PKFIQMLNDMH 206
>gi|297170478|gb|ADI21508.1| type II secretory pathway, component PulF [uncultured
verrucomicrobium HF0070_15G23]
Length = 414
Score = 46.0 bits (108), Expect = 0.008, Method: Composition-based stats.
Identities = 24/160 (15%), Positives = 56/160 (35%), Gaps = 12/160 (7%)
Query: 170 NLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAE-DIGGQSVPLSEEMLLTIAE 228
+ + + + L +++G+ + AL + + GG +S + + +
Sbjct: 63 SRRSAVKKPKLQDLANYTRQLANLLKAGMPLTSALHSMTSMESGGVHPLVS---VSLLGD 119
Query: 229 LSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAE 288
+ N A ++ + ++++ G S+ + L L ER E
Sbjct: 120 VKEGKNLSRAMKSHAEVFPAMYIN-----MVRAGESGGSLVEVLERLADHY--ERFAEVR 172
Query: 289 KKAASLGPKLTVPMII-FFLPVLILVIIGPAILSIIDTMK 327
+K S + + F L + + I P + I + M
Sbjct: 173 QKVISALVYPAFVIGLGFILIFVFMSYILPKFMKIFEGMN 212
>gi|150401576|ref|YP_001325342.1| hypothetical protein Maeo_1153 [Methanococcus aeolicus Nankai-3]
gi|150014279|gb|ABR56730.1| conserved hypothetical protein [Methanococcus aeolicus Nankai-3]
Length = 342
Score = 46.0 bits (108), Expect = 0.008, Method: Composition-based stats.
Identities = 23/150 (15%), Positives = 52/150 (34%), Gaps = 7/150 (4%)
Query: 117 LVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQ 176
++ ++ + + I D + Y + +L G P + + + +
Sbjct: 110 YFLKTLIKSFGFGVLFLMIQLVDGDVIYAITQSIVVFLLFLIGGIFYPKIKLMLFKGEVK 169
Query: 177 SSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAEL-SFLPNR 235
I A + +L SG S+ + ++ + + +S E I ++ N
Sbjct: 170 LQIMMAMLHMVSML----NSGASLQECIKNIGSN--SDYGIVSFEFKNVIYDIVRGGYNF 223
Query: 236 QVAFENFYNRTQMDCVRNATQALIQSDRYG 265
+ + E NRT + + LI + G
Sbjct: 224 KESLERAKNRTGISLMEKLYAQLITASNQG 253
>gi|81300878|ref|YP_401086.1| fimbrial assembly protein PilC-like [Synechococcus elongatus PCC
7942]
gi|81169759|gb|ABB58099.1| fimbrial assembly protein PilC-like [Synechococcus elongatus PCC
7942]
Length = 410
Score = 46.0 bits (108), Expect = 0.008, Method: Composition-based stats.
Identities = 24/134 (17%), Positives = 49/134 (36%), Gaps = 12/134 (8%)
Query: 180 KRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAF 239
+ L V++G+ I +AL + E ++ L + + ++ N +
Sbjct: 67 VKDMALFSRQLSSLVDAGVPIVRALGLLTE--QTRNPKLRKTLKQINIDVQEGLNLSDSM 124
Query: 240 ENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLT 299
F A+IQ+ G + D L L + + K+A +T
Sbjct: 125 RKFPKVFD-----GLYVAMIQAGETGGVLDDVLNRLSKLLEDMSRLRNQMKSA-----MT 174
Query: 300 VPMIIFFLPVLILV 313
PM +F + +L+ +
Sbjct: 175 YPMAVFVIAILVFL 188
>gi|218883478|ref|YP_002427860.1| type II secretion system protein [Desulfurococcus kamchatkensis
1221n]
gi|218765094|gb|ACL10493.1| type II secretion system protein [Desulfurococcus kamchatkensis
1221n]
Length = 562
Score = 46.0 bits (108), Expect = 0.008, Method: Composition-based stats.
Identities = 40/207 (19%), Positives = 74/207 (35%), Gaps = 17/207 (8%)
Query: 114 NILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQ 173
+ +V LV I ++L + L V ++++ + S +
Sbjct: 18 GFMFLVSLVASISLIVLAVFLFHN---------PLLVIILVILPTIVLLLMVSLPSLIAT 68
Query: 174 KRQSSIKRAWPDALDLLLICVESGISIDQALRRV--AEDIGGQSVPLSEEMLLTIAELSF 231
R SSI +P L V SG+S A RV I +S L++ +L L
Sbjct: 69 SRASSIDGEFPFLSAYLSTMVMSGLSPYIAFERVLRGSIIFKRSSELAQRFILLSRVL-- 126
Query: 232 LPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSL----RVLVSETRSERLMEA 287
+ AF+ R V+ I + + G + D L R+L +E + A
Sbjct: 127 GRDPLTAFDELSQRVASSRVKETLSGYIATVKAGGDVIDYLNKRSRLLFNEMLVGMKIIA 186
Query: 288 EKKAASLGPKLTVPMIIFFLPVLILVI 314
++ L L + ++ ++ +
Sbjct: 187 DRLGGLLEAYLAMVLLTMISFTVLYFV 213
Score = 38.7 bits (89), Expect = 1.2, Method: Composition-based stats.
Identities = 33/224 (14%), Positives = 78/224 (34%), Gaps = 24/224 (10%)
Query: 112 SLNILLVVRLVVPIIFLILGIIWIFG---YDKLLEYPFQLRVGAVILIGYVG----FCAP 164
+ + + ++ + GI + Y+ L P +G ++L+ VG +
Sbjct: 263 PYMVFFATFIPIILVLSLFGIFFYLMLPPYNPLRLNPVTQFIGEMLLLFGVGNPPGYMYS 322
Query: 165 SVWISNLV-------------QKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDI 211
++ +S + R+ + R L L+ ++G+ ++++ ++
Sbjct: 323 TIALSTALIIATIPGFIYYLYVSREYKVVRGITRFLRDLVEVRKTGLPPERSIIELSSR- 381
Query: 212 GGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDS 271
++ + ELS + + + + + L S G +
Sbjct: 382 --DYGVFTQYLRKAAMELSIGVPLRRIIDELMKKIRSWTGQVLLFILTDSIEVGGGTVEV 439
Query: 272 LRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVII 315
L L S +E EKK SL + VP + L + ++ +
Sbjct: 440 LENLAWFAESVEAIEDEKK-RSLRTLMIVPYMGGILSAVTVIYM 482
>gi|167772242|ref|ZP_02444295.1| hypothetical protein ANACOL_03617 [Anaerotruncus colihominis DSM
17241]
gi|167665345|gb|EDS09475.1| hypothetical protein ANACOL_03617 [Anaerotruncus colihominis DSM
17241]
Length = 292
Score = 46.0 bits (108), Expect = 0.008, Method: Composition-based stats.
Identities = 42/311 (13%), Positives = 111/311 (35%), Gaps = 27/311 (8%)
Query: 16 VAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTR 75
+++ + +F ++ A+ + + + L+ + +A +R +L ++ Q S + L
Sbjct: 1 MSVVFLIFLFGILLAMGLFFIMADLLK--LPRLATQRAMLSVRRQGKKQARSVEALL--- 55
Query: 76 DSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRS-EYSLNILLVVRLVVPIIFLILGIIW 134
++++ + N L AAG +V+ ++ +I ++
Sbjct: 56 -MGWAVRLAPRIHMDEYKRGR-LKNTLAAAGLNMTPEEYTAFAMVKTGSVLLAVIPCLLV 113
Query: 135 IFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICV 194
++ I + ++ I+ P + + +
Sbjct: 114 FPLLALVVVLLAVAVYFKEIRRA-----------EEKLSVKRDEIEAELPRFVATITQEL 162
Query: 195 ESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNA 254
+ + + G S E+ + A++ + + A F R + +
Sbjct: 163 AVSRDVLSMIEHYKQHAGET---FSAELDVLTADMRSG-SYEAALTRFEARFNSPLLSDI 218
Query: 255 TQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKL---TVPMIIFFLPVLI 311
+ LI R G + + ++L + + L + KA + PK+ ++ +++ FL +
Sbjct: 219 VRGLIGVLR-GDNGINYFQMLSHDMKQLELQRLKAKAMKIPPKIRAFSLTLLMCFLGTYL 277
Query: 312 LVIIGPAILSI 322
+II I S+
Sbjct: 278 AIIIYEIIHSL 288
>gi|333025386|ref|ZP_08453450.1| hypothetical protein STTU_2890 [Streptomyces sp. Tu6071]
gi|332745238|gb|EGJ75679.1| hypothetical protein STTU_2890 [Streptomyces sp. Tu6071]
Length = 266
Score = 46.0 bits (108), Expect = 0.009, Method: Composition-based stats.
Identities = 25/134 (18%), Positives = 50/134 (37%), Gaps = 6/134 (4%)
Query: 193 CVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVR 252
CV +G +A V + + E + AE+ + A+ F + +
Sbjct: 136 CVAAGAGPVEAAEAVGASLDEL---VGERLRHVAAEIRLGGEPERAWALFGS---LPGAG 189
Query: 253 NATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLIL 312
L ++ G + L ++ R+ A A G +T P+ + FLP +L
Sbjct: 190 GLAGLLQRATVSGAPVAGPALALAADCRARWARGATAAARRAGVLVTAPLGLCFLPAFLL 249
Query: 313 VIIGPAILSIIDTM 326
+ + P +L + +
Sbjct: 250 LGVAPVLLGLAGEL 263
>gi|313837846|gb|EFS75560.1| type II secretion system F domain protein [Propionibacterium acnes
HL037PA2]
Length = 307
Score = 45.6 bits (107), Expect = 0.009, Method: Composition-based stats.
Identities = 45/320 (14%), Positives = 112/320 (35%), Gaps = 23/320 (7%)
Query: 7 DLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKD 66
D T L++ V++ L+ +L ++ V+ + +Q +
Sbjct: 9 DPMTTTALSLLAGAVVTVGLLVITAAFRPAPGPDLVAALEVVSGRTSSVDEQIDQTRIGR 68
Query: 67 SASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPII 126
S RT L L+ + +L +A + ++P +
Sbjct: 69 LGRSVTRTFHLSVSPAMRAALRLQGTTPEAFYGRRLMSA------------LAGAILPWL 116
Query: 127 FLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDA 186
+ I + LL + + + G+ P+ + A
Sbjct: 117 LNAIAIAVGANFPSLL-----IPAALCVALAGAGWMLPAARLKAATGPTNDDSFEALLVF 171
Query: 187 LDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSF-LPNRQVAFENFYNR 245
+DL+++ + + AL A PL ++ + + + + +
Sbjct: 172 IDLVVLERLANETSVDALTNAAH---VSDAPLFIQIRQVLNRAALENVDPWNGLDRLADD 228
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
++ + + + + G S+ DS R V+E R L+ ++++ ++ +L + ++
Sbjct: 229 IKLPELTDVVS-IARLQEEGASLVDSFRARVAELRDAYLLRLQQESTTITQRLGLWTVL- 286
Query: 306 FLPVLILVIIGPAILSIIDT 325
++L+++G A L++I T
Sbjct: 287 QAGSVMLILLGAAALTLITT 306
>gi|167628706|ref|YP_001679205.1| hypothetical protein HM1_0589 [Heliobacterium modesticaldum Ice1]
gi|167591446|gb|ABZ83194.1| hypothetical protein HM1_0589 [Heliobacterium modesticaldum Ice1]
Length = 290
Score = 45.6 bits (107), Expect = 0.009, Method: Composition-based stats.
Identities = 19/109 (17%), Positives = 44/109 (40%), Gaps = 5/109 (4%)
Query: 217 PLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLV 276
+ E+ + A++ + + A F R + + + LI R G ++L
Sbjct: 180 AFARELDIVTADMRS-SSYEAALTRFEARLNSPMLSDVVRGLIGVLR-GDDSAVYFQMLA 237
Query: 277 SETRSERLMEAEKKAASLGPKL---TVPMIIFFLPVLILVIIGPAILSI 322
+ ++ L + +A + K+ + M++ FL + VI + S+
Sbjct: 238 HDFKALELQRLKGQAQKIPSKIRVFSFIMLMCFLFTYLAVIAYEIVKSL 286
>gi|304405118|ref|ZP_07386778.1| conserved hypothetical protein [Paenibacillus curdlanolyticus YK9]
gi|304345997|gb|EFM11831.1| conserved hypothetical protein [Paenibacillus curdlanolyticus YK9]
Length = 299
Score = 45.6 bits (107), Expect = 0.009, Method: Composition-based stats.
Identities = 37/251 (14%), Positives = 85/251 (33%), Gaps = 18/251 (7%)
Query: 70 SRLRTRDSKSLRNFVKKLNL-KAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFL 128
+ LR + ++++L L +A V L GF + +L + R + +
Sbjct: 45 TGLRWTTASMSDRWLERLRLSRAHPVFVEREALLGGCGFDGDAAL--YIACRRIALVAMP 102
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
+L + G+ + + + ++ W+ ++ + R I + +
Sbjct: 103 VLAGVASIGWLLAAKSWPPIALFGGGAALFLICRFDLAWLRSIHRVRAQRITKEVHVISN 162
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
LL + + + L R + L +M +AE + + A F R
Sbjct: 163 QLLYFAGANLHLHTKLSRCV----PFAKVLQSDMQRLLAEWYH--DAEEALRRFKLRLGT 216
Query: 249 DCVRNATQALI-----QSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMI 303
+ + + L +S+ + LR + + + + + E + + L V
Sbjct: 217 EDGASFVETLDSLRLHESEEF----YSLLRQRIQDYKEKLELAKESRKETTSYALFVVAG 272
Query: 304 IFFLPVLILVI 314
I L + I
Sbjct: 273 IPILYTFQVFI 283
>gi|227545623|ref|ZP_03975672.1| conserved hypothetical protein [Bifidobacterium longum subsp.
infantis ATCC 55813]
gi|227213739|gb|EEI81578.1| conserved hypothetical protein [Bifidobacterium longum subsp.
infantis ATCC 55813]
Length = 149
Score = 45.6 bits (107), Expect = 0.009, Method: Composition-based stats.
Identities = 37/149 (24%), Positives = 59/149 (39%), Gaps = 15/149 (10%)
Query: 189 LLLICVESGISIDQALRRVAEDIGGQS--------------VPLSEEMLLTIAELSFLPN 234
+L + + G SI +AL V + +GG VP ++ +A
Sbjct: 1 MLQVSLRQGSSIPRALDMVGKAVGGDCGARMSEVGSSLARGVPWADAWHAAMAVQHEGAP 60
Query: 235 RQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASL 294
+ +RTQ + AL S +G G L + + + E+ AA L
Sbjct: 61 ADSSSGKRTSRTQ-RDLGLLQSALESSWTHGDMPGVRLESAIEQLDRDERAAIERNAAKL 119
Query: 295 GPKLTVPMIIFFLPVLILVIIGPAILSII 323
KL +P + FLP +LV + PAI S +
Sbjct: 120 SVKLLMPTGLCFLPAFVLVGVIPAIASFM 148
>gi|33593508|ref|NP_881152.1| hypothetical protein BP2525 [Bordetella pertussis Tohama I]
gi|33572864|emb|CAE42798.1| putative membrane protein [Bordetella pertussis Tohama I]
gi|332382916|gb|AEE67763.1| hypothetical protein BPTD_2483 [Bordetella pertussis CS]
Length = 281
Score = 45.6 bits (107), Expect = 0.010, Method: Composition-based stats.
Identities = 25/133 (18%), Positives = 54/133 (40%), Gaps = 4/133 (3%)
Query: 184 PDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFY 243
P AL + + +G I ALR++ E PL++E L + E + A
Sbjct: 111 PGALVAMACALRAGAGIAAALRQLVEHGEA---PLAQEFGLLLREQRMGVSFDAALARLA 167
Query: 244 NRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMI 303
R + + AL + G ++ ++L + + ++ +A ++ I
Sbjct: 168 RRASFESMALVAAALRVAAHTGGNLAETLEGIAQTVSARLQLQDRVRALCAQGRMQA-WI 226
Query: 304 IFFLPVLILVIIG 316
+ LP +++ ++G
Sbjct: 227 VGALPPVLMGVLG 239
>gi|33596529|ref|NP_884172.1| hypothetical protein BPP1911 [Bordetella parapertussis 12822]
gi|33566298|emb|CAE37211.1| putative membrane protein [Bordetella parapertussis]
Length = 281
Score = 45.6 bits (107), Expect = 0.010, Method: Composition-based stats.
Identities = 25/133 (18%), Positives = 54/133 (40%), Gaps = 4/133 (3%)
Query: 184 PDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFY 243
P AL + + +G I ALR++ E PL++E L + E + A
Sbjct: 111 PGALVAMACALRAGAGIAAALRQLVEHGEA---PLAQEFGLLLREQRMGVSFDAALARLA 167
Query: 244 NRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMI 303
R + + AL + G ++ ++L + + ++ +A ++ I
Sbjct: 168 RRASFESMALVAAALRVAAHTGGNLAETLEGIAQTVSARLQLQDRVRALCAQGRMQA-WI 226
Query: 304 IFFLPVLILVIIG 316
+ LP +++ ++G
Sbjct: 227 VGALPPVLMGVLG 239
>gi|218847958|ref|YP_002454864.1| conserved membrane protein, putative [Bacillus cereus G9842]
gi|218546089|gb|ACK98482.1| conserved membrane protein, putative [Bacillus cereus G9842]
Length = 327
Score = 45.6 bits (107), Expect = 0.010, Method: Composition-based stats.
Identities = 42/308 (13%), Positives = 95/308 (30%), Gaps = 39/308 (12%)
Query: 21 AVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSL 80
V IF LI + +KR K A I + Q ++K S + L
Sbjct: 13 GVCIFILIATFFLK-------DKRKKYTAENILIDLENQKAQMEKRSKEEQNIDIPYTFL 65
Query: 81 RNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDK 140
+F + + N++ + R + + I +I G
Sbjct: 66 DSFFNNFSFTEKIAPSNVIAEARR--------YEWFIGAKEYWTI--------YIVGSTL 109
Query: 141 LLEYPFQLRVG--AVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGI 198
L F + G ++ +GF + +K + + + +
Sbjct: 110 LTGSIFLMLNGHIGCVIGYALGFYIHRFMLHVHRRKYKFVENDRISIYMKTMTNSLHILG 169
Query: 199 SIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQAL 258
++ A+ V + EE+ +L + A + + + + L
Sbjct: 170 TVIDAIEEV---KPLVHSSIREELDKATFKLKQGKSVAEALSSLDKKYPYKELMFFHEML 226
Query: 259 IQSDRYGTSIGDSLRVLVSETRSERLMEAEKKA----------ASLGPKLTVPMII-FFL 307
+D+ G ++L + + ++ + + A + + +P I FF+
Sbjct: 227 DVADKNGGKNTEALESIALDFEDRKVKQMQLYAETTQGMKAFRNTAAIVIALPFIFKFFM 286
Query: 308 PVLILVII 315
P +++
Sbjct: 287 PQAYSILM 294
>gi|256832095|ref|YP_003160822.1| type II secretion system protein [Jonesia denitrificans DSM 20603]
gi|256685626|gb|ACV08519.1| type II secretion system protein [Jonesia denitrificans DSM 20603]
Length = 284
Score = 45.6 bits (107), Expect = 0.010, Method: Composition-based stats.
Identities = 27/129 (20%), Positives = 48/129 (37%), Gaps = 4/129 (3%)
Query: 164 PSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEML 223
P + + + ++++ + WPD +D L+ V +G+ + +A VA L EE
Sbjct: 89 PFIIVKSRAERQRIRRREVWPDVVDHLISGVRAGLPLPEA---VAHLGMRGPEQLREEFA 145
Query: 224 LTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRY-GTSIGDSLRVLVSETRSE 282
+ E R +AL + GT IG L L + R +
Sbjct: 146 IFGREYRATGRFDDCLITLKERLADPTADRVIEALRVTRSVGGTEIGHLLSTLATFLRQD 205
Query: 283 RLMEAEKKA 291
+ E +A
Sbjct: 206 LRVRGELEA 214
>gi|56752033|ref|YP_172734.1| type IV pilus assembly protein PilC [Synechococcus elongatus PCC
6301]
gi|56686992|dbj|BAD80214.1| type IV pilus assembly protein PilC [Synechococcus elongatus PCC
6301]
Length = 410
Score = 45.6 bits (107), Expect = 0.010, Method: Composition-based stats.
Identities = 25/145 (17%), Positives = 47/145 (32%), Gaps = 8/145 (5%)
Query: 180 KRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAF 239
+ L V++G+ I +AL + E ++ L + + ++ N +
Sbjct: 67 VKDMALFSRQLSSLVDAGVPIVRALGLLTE--QTRNPKLRKTLKQINIDVQEGLNLSDSM 124
Query: 240 ENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLT 299
F A+IQ+ G + D L L + + K+A P
Sbjct: 125 RKFPKVFD-----GLYVAMIQAGETGGVLDDVLNRLSKLLEDMSRLRNQMKSAMTYPMAV 179
Query: 300 VPMIIFFLPVLILVIIGPAILSIID 324
I + + II P I +
Sbjct: 180 FVTAILVFLGMTIFII-PTFAGIFE 203
>gi|269955134|ref|YP_003324923.1| type II secretion system protein [Xylanimonas cellulosilytica DSM
15894]
gi|269303815|gb|ACZ29365.1| type II secretion system protein [Xylanimonas cellulosilytica DSM
15894]
Length = 183
Score = 45.6 bits (107), Expect = 0.010, Method: Composition-based stats.
Identities = 38/179 (21%), Positives = 70/179 (39%), Gaps = 24/179 (13%)
Query: 155 LIGYVGFCA--PSVWISNLVQKRQSSIKRAWPD--------------ALDLLLICVESGI 198
+I +G A P + + + ++R +++ P L+LL + +G
Sbjct: 1 MIAALGLLAVMPWLLVDRVARRRCAALAGVAPTGCSQDARPPVDVTVVLELLGAALRAGA 60
Query: 199 SIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQAL 258
+ +A+ VA+ +GG + + L VA+E R + +AL
Sbjct: 61 GVPRAIETVAQAVGGADGAA---LARVASALRLGAAWTVAWEGVPPRLDV-----VARAL 112
Query: 259 IQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGP 317
+ G + G++L E R R A L +L +P+ FLP +LV + P
Sbjct: 113 RPAWDEGAAPGEALTAAGEELRRARRDATRTAAGRLAVQLVLPLGTCFLPAFVLVGLAP 171
>gi|45357601|ref|NP_987158.1| type II secretion system protein [Methanococcus maripaludis S2]
gi|45047161|emb|CAF29594.1| conserved hypothetical protein [Methanococcus maripaludis S2]
Length = 298
Score = 45.6 bits (107), Expect = 0.011, Method: Composition-based stats.
Identities = 33/213 (15%), Positives = 89/213 (41%), Gaps = 15/213 (7%)
Query: 114 NILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQ 173
+ + + LV+ I+ ++L I F L F + +G+V+ + + + +
Sbjct: 32 RVFIGILLVITILPILLKIFLGFTLKTTLILTF-VYLGSVLSLPTIMY-----------E 79
Query: 174 KRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLP 233
+ + P AL ++++ ++SG S+ +A+ V + + +++ + E
Sbjct: 80 SKMDKFDKNIPKALYVMVLSLDSGRSVVEAINEVIRSGIPEVDVVFSKIVTLMTERKL-- 137
Query: 234 NRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAAS 293
+ + A N R + +I++ +YG + D+L+ L + ++++ + +
Sbjct: 138 SFEDAMILVSNSLDSKIFRQVGRLIIENRKYGGELADTLKKLAKTLDDLQNLKSQLLSVT 197
Query: 294 LGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
+I+ + +IG L++I +
Sbjct: 198 ANGLAVGLIILCGVIPATAGLIG-GYLTVISQL 229
>gi|311065087|ref|YP_003971813.1| hypothetical protein BBPR_1759 [Bifidobacterium bifidum PRL2010]
gi|310867407|gb|ADP36776.1| Conserved hypothetical protein, TadC-like protein [Bifidobacterium
bifidum PRL2010]
Length = 141
Score = 45.6 bits (107), Expect = 0.011, Method: Composition-based stats.
Identities = 31/144 (21%), Positives = 60/144 (41%), Gaps = 7/144 (4%)
Query: 182 AWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFE- 240
+ P + LL + + SG+S+ ++L V E +GG L + + A+
Sbjct: 2 SLPLLIGLLSVSLRSGMSVTRSLEGVGEAVGGALGGGL---CAVADALHRGSSWKDAWNA 58
Query: 241 -NFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLT 299
+F + + + AL S G S L + E+++ASL KL
Sbjct: 59 ADFGDYAETSAI--LRGALEPSWTRGVSPIGRLTTASEQWMEGERTAIEQESASLSVKLL 116
Query: 300 VPMIIFFLPVLILVIIGPAILSII 323
+P + LP + + I P++++ +
Sbjct: 117 LPTGLCMLPAFVFLGILPSVMAFV 140
>gi|260892677|ref|YP_003238774.1| Type II secretion system F domain protein [Ammonifex degensii KC4]
gi|260864818|gb|ACX51924.1| Type II secretion system F domain protein [Ammonifex degensii KC4]
Length = 283
Score = 45.6 bits (107), Expect = 0.011, Method: Composition-based stats.
Identities = 23/154 (14%), Positives = 55/154 (35%), Gaps = 4/154 (2%)
Query: 151 GAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAED 210
+ AP + R+ ++ ++ + +G + A V
Sbjct: 78 ALGAFLAACVCLAPRLAARAREALRREAVVSGLEGVCGVMATALRAGQDVMSA---VEGS 134
Query: 211 IGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGT-SIG 269
+ PL E+ +AE+ + A ENF + R A+ + R G ++
Sbjct: 135 VKYARPPLKRELEELVAEVKLGRSLGEAVENFARKWPSPETRLLAYAVTLAQRMGGQAVP 194
Query: 270 DSLRVLVSETRSERLMEAEKKAASLGPKLTVPMI 303
+L + S R ++ + +A + +++ ++
Sbjct: 195 KALLSVTSSVRERLELKHQVRAKTTYQRVSAVVV 228
>gi|153956469|ref|YP_001397234.1| hypothetical protein CKL_3886 [Clostridium kluyveri DSM 555]
gi|146349327|gb|EDK35863.1| Hypothetical protein CKL_3886 [Clostridium kluyveri DSM 555]
Length = 289
Score = 45.6 bits (107), Expect = 0.011, Method: Composition-based stats.
Identities = 24/155 (15%), Positives = 62/155 (40%), Gaps = 8/155 (5%)
Query: 171 LVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELS 230
+ +++S+++ P + + +++ + L V + E+ + A++
Sbjct: 136 RLSAKRASVEKELPRFVANIEQELKASRDV---LAIVENYKKNAGEAFAGELTMLAADMR 192
Query: 231 FLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKK 290
+ + A F R + + + LI R G ++L + + L + +
Sbjct: 193 S-SSYEAALTRFEARLNSPMLSDVVRGLIGVLR-GDDSTVYFQMLTHDFKQLELQRLKSE 250
Query: 291 AASLGPKL---TVPMIIFFLPVLILVIIGPAILSI 322
A + PK+ + M++ FL +++I I S+
Sbjct: 251 AQKIPPKIRVFSFLMLMCFLFTYLVIIAYEIIKSL 285
>gi|303241409|ref|ZP_07327912.1| conserved hypothetical protein [Acetivibrio cellulolyticus CD2]
gi|302591018|gb|EFL60763.1| conserved hypothetical protein [Acetivibrio cellulolyticus CD2]
Length = 295
Score = 45.3 bits (106), Expect = 0.012, Method: Composition-based stats.
Identities = 25/183 (13%), Positives = 67/183 (36%), Gaps = 6/183 (3%)
Query: 146 FQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALR 205
+ +IL+ +V++++ I+ P + L +++ + L+
Sbjct: 117 LPILTPVIILLSIAMLFKEMRAADEIVRQKREEIEYELPRFVSNLTQSLKATRDVPAILK 176
Query: 206 RVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYG 265
+ G + +E+ +TIA++ + A +R + + + LI S + G
Sbjct: 177 SYQKSAGEKFK---QEIEVTIADMKSGNE-ETALTRLESRIGSAMLSDVVRGLI-SVKRG 231
Query: 266 TSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDT 325
+ +L + + + + + A K+ L +L+ +G I+
Sbjct: 232 DNGVIYFEMLNHDFKQLEIQKLKLLAMKQPGKIK-KYSFMMLGCFLLIYLGILGYEIMRA 290
Query: 326 MKD 328
+ +
Sbjct: 291 LGN 293
>gi|257386199|ref|YP_003175972.1| type II secretion system protein [Halomicrobium mukohataei DSM
12286]
gi|257168506|gb|ACV46265.1| type II secretion system protein [Halomicrobium mukohataei DSM
12286]
Length = 630
Score = 45.3 bits (106), Expect = 0.012, Method: Composition-based stats.
Identities = 26/133 (19%), Positives = 47/133 (35%), Gaps = 6/133 (4%)
Query: 153 VILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAED-- 210
V L+ YV + P ++ K + R D + + V G +A+ RVAE+
Sbjct: 381 VALLAYVAYGLPVGAVAVRRAKVDDAKDREIQDFVHAVSGHVSLGRPFSEAVERVAEEVD 440
Query: 211 ---IGGQSVPLSEEMLLTIA-ELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGT 266
+ L+ + LT + + R A + F R ++ + G+
Sbjct: 441 LGALQSDVDQLAFTLGLTASPDDDATDGRAAALDRFVERVGTPMAEQTIGLVVGALDAGS 500
Query: 267 SIGDSLRVLVSET 279
D L +E
Sbjct: 501 DAEDVFETLQTEI 513
>gi|320457131|dbj|BAJ67752.1| conserved hypothetical protein [Bifidobacterium longum subsp.
infantis ATCC 15697]
Length = 151
Score = 45.3 bits (106), Expect = 0.013, Method: Composition-based stats.
Identities = 34/153 (22%), Positives = 55/153 (35%), Gaps = 19/153 (12%)
Query: 187 LDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFEN-FY-- 243
+ +L + + G SI +AL V + +G M + L+ A+
Sbjct: 1 MRMLQVSLRQGSSIPRALDMVGKAVGDDCGA---RMSEVGSSLTRGVPWADAWHAAMAVQ 57
Query: 244 -------------NRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKK 290
T + AL S +G G L + + + E+
Sbjct: 58 HEGAPADSPSGEDTNTTQRDLGLLQSALESSWTHGDMPGVRLESAIEQLDRDERAAIERN 117
Query: 291 AASLGPKLTVPMIIFFLPVLILVIIGPAILSII 323
AA L KL +P + FLP +LV + PAI S +
Sbjct: 118 AAKLSVKLLMPTGLCFLPAFVLVGVIPAIASFM 150
>gi|219856773|ref|YP_002473895.1| hypothetical protein CKR_3430 [Clostridium kluyveri NBRC 12016]
gi|219570497|dbj|BAH08481.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
Length = 292
Score = 45.3 bits (106), Expect = 0.013, Method: Composition-based stats.
Identities = 24/155 (15%), Positives = 62/155 (40%), Gaps = 8/155 (5%)
Query: 171 LVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELS 230
+ +++S+++ P + + +++ + L V + E+ + A++
Sbjct: 139 RLSAKRASVEKELPRFVANIEQELKASRDV---LAIVENYKKNAGEAFAGELTMLAADMR 195
Query: 231 FLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKK 290
+ + A F R + + + LI R G ++L + + L + +
Sbjct: 196 S-SSYEAALTRFEARLNSPMLSDVVRGLIGVLR-GDDSTVYFQMLTHDFKQLELQRLKSE 253
Query: 291 AASLGPKL---TVPMIIFFLPVLILVIIGPAILSI 322
A + PK+ + M++ FL +++I I S+
Sbjct: 254 AQKIPPKIRVFSFLMLMCFLFTYLVIIAYEIIKSL 288
>gi|238917898|ref|YP_002931415.1| hypothetical protein EUBELI_01985 [Eubacterium eligens ATCC 27750]
gi|238873258|gb|ACR72968.1| Hypothetical protein EUBELI_01985 [Eubacterium eligens ATCC 27750]
Length = 235
Score = 45.3 bits (106), Expect = 0.013, Method: Composition-based stats.
Identities = 23/183 (12%), Positives = 67/183 (36%), Gaps = 18/183 (9%)
Query: 150 VGAVILIGYVGF--------CAPSVWISNLVQKR------QSSIKRAWPDALDLLLICVE 195
VG +I+ Y+ + P V + +R + + + + D + + +
Sbjct: 11 VGVIIIAAYIFYENIFMSVLLIPYVAVHIKESRRIAEAKKKRILTKQFKDGIMAVSFALN 70
Query: 196 SGISIDQALRRVAEDI---GGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVR 252
G SI+ A + +++ G + + + ++ N + +F +++ +
Sbjct: 71 VGYSIENAFSQAIDELILLYGSEADIVMKFKNIVVRINQNENLEDILNDFAKECKIEDIM 130
Query: 253 NATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLIL 312
+ + R G + +R + + + E + G ++ ++ P LI+
Sbjct: 131 YFAEVFRYAKRSGGDLISIIRNTADIIQQKTEVATEVETIVSGKRMEQKVMSAI-PALII 189
Query: 313 VII 315
+ +
Sbjct: 190 LYL 192
>gi|291529646|emb|CBK95232.1| hypothetical protein ERE_34920 [Eubacterium rectale M104/1]
Length = 331
Score = 45.3 bits (106), Expect = 0.013, Method: Composition-based stats.
Identities = 48/319 (15%), Positives = 123/319 (38%), Gaps = 40/319 (12%)
Query: 5 FFDLFDATELAVA-------ITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRK 57
FD +T +A I +++F ++ ++ + + ++ K K+ ++E LR
Sbjct: 7 LFDTLMSTNKMLAYMHAGTFILVFIAVFLIVTYLINHNWFAKKMAK-FKNDVKKQEELRN 65
Query: 58 QQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILL 117
++ R R+ + + L +L + + NK F + N +L
Sbjct: 66 EE----------YRKRSLLEGDFEDDSRMYKLTKMLNESGLKNK-----FPELNASNFIL 110
Query: 118 VVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQS 177
+ L+ I LI+ II + +GA ++G + F ++ + +
Sbjct: 111 TIILLCGITGLIVFII---------TKAAIISLGAAAIMGILVFV----YMQVSINRNYI 157
Query: 178 SIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQV 237
+ + +++L S +I + L R A + ++EE +E+ N +
Sbjct: 158 NTENEIVKFINMLDNVSSSENTIGEMLHRTAPYLKDPLRSMTEE---CYSEIKTDGNVPL 214
Query: 238 AFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPK 297
A ++ ++ ++ +L + + + + R+ + + E++ +
Sbjct: 215 ALKHMADKANHKKLKQILNSLKSCATHNENYSEVIEDNRESIRAYIMFKKEER-NIIKNA 273
Query: 298 LTVPMIIFFLPVLILVIIG 316
L +I+ V+++ ++G
Sbjct: 274 LFETVILAIAGVVMVYMVG 292
>gi|229827058|ref|ZP_04453127.1| hypothetical protein GCWU000182_02442 [Abiotrophia defectiva ATCC
49176]
gi|229788676|gb|EEP24790.1| hypothetical protein GCWU000182_02442 [Abiotrophia defectiva ATCC
49176]
Length = 293
Score = 45.3 bits (106), Expect = 0.013, Method: Composition-based stats.
Identities = 27/187 (14%), Positives = 67/187 (35%), Gaps = 9/187 (4%)
Query: 133 IWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLI 192
+ IF LL + ++ + A + ++ I+ P ++
Sbjct: 103 VLIFIPGILLMPFLPMLTFGFAVLAAFSYYATESLLYKNYLNKKREIEYELPRFCSVIGQ 162
Query: 193 CVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVR 252
V++ + + + + L EE+ + IA+++ N + A + F R +D +
Sbjct: 163 EVKA---TKDVIGILGRYMPTANRALREELKVLIADMNS-SNYESALKRFEVRLGIDKMA 218
Query: 253 NATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKL----TVPMIIFFLP 308
+ LI + R G +L + L A+ K+ + + +
Sbjct: 219 EIVRGLIGTVR-GDDTVTYFEMLSRDLDQLELQRLNDIASMQPRKVGKYQLIVLAVMIAN 277
Query: 309 VLILVII 315
++++I+
Sbjct: 278 YVVIMIL 284
>gi|300790607|ref|YP_003770898.1| hypothetical protein AMED_8803 [Amycolatopsis mediterranei U32]
gi|299800121|gb|ADJ50496.1| conserved hypothetical protein [Amycolatopsis mediterranei U32]
Length = 238
Score = 45.3 bits (106), Expect = 0.014, Method: Composition-based stats.
Identities = 31/145 (21%), Positives = 53/145 (36%), Gaps = 6/145 (4%)
Query: 183 WPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENF 242
LDLL C+ +G+ + AL VA + +A A+
Sbjct: 97 LAGTLDLLAACLRAGLPVPSALEAVAGSAPAAASTALSSTAGLLA---LGSPPHEAW--- 150
Query: 243 YNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPM 302
+ A I++ R G + + L R E EAE++A G L +P+
Sbjct: 151 APVQAAPGLGELAAAAIRTSRSGAAFAAAAGDLAGRFRDELATEAEERAERAGVALALPV 210
Query: 303 IIFFLPVLILVIIGPAILSIIDTMK 327
+ FLP + + P +L + +
Sbjct: 211 GLCFLPAFFCLGVLPVVLGLAGRLG 235
>gi|154482610|ref|ZP_02025058.1| hypothetical protein EUBVEN_00277 [Eubacterium ventriosum ATCC
27560]
gi|149736510|gb|EDM52396.1| hypothetical protein EUBVEN_00277 [Eubacterium ventriosum ATCC
27560]
Length = 238
Score = 45.3 bits (106), Expect = 0.014, Method: Composition-based stats.
Identities = 22/156 (14%), Positives = 66/156 (42%), Gaps = 7/156 (4%)
Query: 174 KRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDI---GGQSVPLSEEMLLTIAELS 230
+ ++ + + + L L + +G S++ L+ ++ G + E+ L + L
Sbjct: 52 RAKAEFEHQYKEMLVALKDGIVTGYSVENGLKESYREMVNIYGYDGLICSELRLMTSRLK 111
Query: 231 FLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKK 290
++ F++F RT ++ + + G ++ + ++ ++ + ++ E+
Sbjct: 112 LNTPIEIVFKDFAERTDLESAHMFYNTFSIAQKSGGNMNNVIKRVIENIVLKESVK-EEI 170
Query: 291 AASLGPKLTVPMIIFFLPVLILV---IIGPAILSII 323
++ K I+ +P+L++ + P L I+
Sbjct: 171 NVAINDKKLEQRIMTVIPLLLIGYISMASPGFLDIM 206
>gi|322371246|ref|ZP_08045798.1| type II secretion system protein [Haladaptatus paucihalophilus
DX253]
gi|320549236|gb|EFW90898.1| type II secretion system protein [Haladaptatus paucihalophilus
DX253]
Length = 640
Score = 45.3 bits (106), Expect = 0.014, Method: Composition-based stats.
Identities = 32/199 (16%), Positives = 66/199 (33%), Gaps = 22/199 (11%)
Query: 121 LVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIK 180
++ P + G++W Y + +L+ YV F P +S +R +
Sbjct: 372 VLAPATVAVGGLLWYLEYTPVN----------TVLLSYVAFALPVGVVSVRRSRRDDAKD 421
Query: 181 RAWPDALDLLLICVESGISIDQALRRVAED-----IGGQSVPLSEEMLLTIAELSFLPNR 235
R D + + V G A+ RVA D + L+ LT E R
Sbjct: 422 REIKDFVHAVSSHVSLGRPFSTAVERVARDVDLGALQPNVNDLAFSSNLTSRE---GDLR 478
Query: 236 QVAFENFYNRTQMDCVRNATQALIQSDRYGTS---IGDSLRV-LVSETRSERLMEAEKKA 291
+ A F + + G + D+L+V + ++ + +
Sbjct: 479 RDALSRFVEDVGTPLADQTIGLVTGTLDVGGDTETVFDTLQVEIGRLYHQKKSLRSNMLV 538
Query: 292 ASLGPKLTVPMIIFFLPVL 310
+ +T +++ + +
Sbjct: 539 YVVVGWMTALLVVGIMVAV 557
>gi|288931798|ref|YP_003435858.1| type II secretion system F domain protein [Ferroglobus placidus DSM
10642]
gi|288894046|gb|ADC65583.1| Type II secretion system F domain protein [Ferroglobus placidus DSM
10642]
Length = 640
Score = 45.3 bits (106), Expect = 0.014, Method: Composition-based stats.
Identities = 39/234 (16%), Positives = 83/234 (35%), Gaps = 10/234 (4%)
Query: 82 NFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKL 141
N + +L + ++ K+ + + I L +R+V + L ++
Sbjct: 340 NVSGEGRRFKVLRIKKLLKKIVSFTLHPYRTSLIFLNMRIVTIHLLLYSAAAFLLLRKFG 399
Query: 142 LEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISID 201
+ + +++ + F L K + P+ + L + ESG+SI
Sbjct: 400 ITLSEHYVLLIFLILFLLTFIV------ELKNKILRKAEEKLPEFFEELAMLNESGVSIF 453
Query: 202 QALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQS 261
+ ++ VA+ G LS+E + + R + D A +++
Sbjct: 454 EGIKLVAKSEAGI---LSKEFEGISRSVELGEPITKSLSKLVVRIKSDIFAKAVPIAVKA 510
Query: 262 DRYGTSIGDSLRVLVSETRSERLMEAEKKAASLG-PKLTVPMIIFFLPVLILVI 314
TSI D+ + SE + K+ + + ++ FL V L+I
Sbjct: 511 LETSTSIKDAFITVSRYVDSELSFRKKLKSNLMPYVAIIYLTVLVFLFVAYLLI 564
>gi|229587498|ref|YP_002860536.1| bacterial type II secretion system protein F domain protein
[Clostridium botulinum Ba4 str. 657]
gi|229260271|gb|ACQ51308.1| bacterial type II secretion system protein F domain protein
[Clostridium botulinum Ba4 str. 657]
Length = 308
Score = 45.3 bits (106), Expect = 0.014, Method: Composition-based stats.
Identities = 47/235 (20%), Positives = 88/235 (37%), Gaps = 31/235 (13%)
Query: 65 KDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVP 124
++ +L + K + +K N+ E I K AG ++ V
Sbjct: 36 QNDLKRQLADKSHKEKFSILKFFNINI----EKIERKFLKAGINAD-----------VEN 80
Query: 125 IIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWP 184
IIF L I + ++ L + I++G +G+ +I + R I + +
Sbjct: 81 IIFSYLLIATLILIIGIIINNTILSLIVPIVLGAMGY----AYIEHKGTNRVIEINKQFI 136
Query: 185 DAL----DLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFE 240
+AL D L I + A++ V + PL E + I E+ N A +
Sbjct: 137 NALIDIGDYLRIDSN----LSNAIKNVT---PNVAYPLKGEFIYIIKEIDSNTNILNALK 189
Query: 241 NFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLG 295
+F R V +++ ++ ++ D ++ R +RL + EK A L
Sbjct: 190 HFDYRVNSTVVNTWVDSMLFANDKRANVSDLCIKHSAKVR-KRLTQNEKLNAKLS 243
>gi|313681843|ref|YP_004059581.1| type ii secretion system f domain [Sulfuricurvum kujiense DSM
16994]
gi|313154703|gb|ADR33381.1| Type II secretion system F domain [Sulfuricurvum kujiense DSM
16994]
Length = 415
Score = 44.9 bits (105), Expect = 0.015, Method: Composition-based stats.
Identities = 24/155 (15%), Positives = 60/155 (38%), Gaps = 10/155 (6%)
Query: 174 KRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLP 233
+++ + A+ L + +GISI +L+ +AE L + +++
Sbjct: 65 RKKKLKQDNLIAAIRQLAVMANAGISIHDSLKEIAE--ATTDKTLQTVLGTMAEDINAGR 122
Query: 234 NRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAE-KKAA 292
+ + NF+ + N + A+I+ ++ ++L L R + KKA
Sbjct: 123 SLSQSAHNFHY-----ELGNLSLAMIELGEKTGNMAEALHKLADMLEEIRRNIIKFKKAM 177
Query: 293 SLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
+ + + M +++ + P +I + +
Sbjct: 178 AYPRNVMIAMA--IAFTVLISYVVPQFKTIFEQLG 210
>gi|313831096|gb|EFS68810.1| conserved hypothetical protein [Propionibacterium acnes HL007PA1]
Length = 297
Score = 44.9 bits (105), Expect = 0.016, Method: Composition-based stats.
Identities = 37/227 (16%), Positives = 85/227 (37%), Gaps = 8/227 (3%)
Query: 102 LRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRV--GAVILIGYV 159
+RAA + L RL+ +I IL + + L + + +
Sbjct: 75 MRAALRLQGTTPEALYGRRLICALIGAILPWLLNAVAIAVGANSPNLLIPSALCVALAGA 134
Query: 160 GFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLS 219
G+ P+ + A +DL+++ + + AL A PL
Sbjct: 135 GWMLPAARLKAAAGPTNDDSFEALLVFIDLVVLERLANETSVDALTNAAN---MSDSPLF 191
Query: 220 EEMLLTIAELSFL-PNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSE 278
++ + S + + ++ + + + + G S+ DS R V+E
Sbjct: 192 VQIRQVLNRASLENVDPWNGLDRLAEDIKLPELTDVVS-IARLQNEGASLVDSFRARVAE 250
Query: 279 TRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDT 325
R L+ ++++ ++ +L + I+ ++L+++G A L++I
Sbjct: 251 LRDAYLLRLQQESTAITQRLGLWTIL-QAGSVMLILLGAAALTLITA 296
>gi|159041008|ref|YP_001540260.1| type II secretion system protein [Caldivirga maquilingensis IC-167]
gi|157919843|gb|ABW01270.1| type II secretion system protein [Caldivirga maquilingensis IC-167]
Length = 271
Score = 44.9 bits (105), Expect = 0.016, Method: Composition-based stats.
Identities = 24/175 (13%), Positives = 61/175 (34%), Gaps = 7/175 (4%)
Query: 124 PIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAW 183
+ L L II + ++ + ++ IG + + +I +++ R +++
Sbjct: 45 AVASLALAIILVKLGPRISLLFILISALSLTAIGMI-----NAYIVIMLRSRARKFEKSM 99
Query: 184 PDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFY 243
L ++ + SG + +A + ++EE ++E + A +
Sbjct: 100 TTILLTMIPLMASGEPLVNVFNYLA--LIKIEPEVNEEFRRLVSEAYSGFDIVSAIKRSI 157
Query: 244 NRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKL 298
R + L++S SI D L + + + + +L +
Sbjct: 158 ERVPSRVYNDVMSILVESYGVSGSIADVLALKLDSIIRREQSTFKSRTQALSLMM 212
>gi|323475960|gb|ADX86566.1| type II secretion system protein [Sulfolobus islandicus REY15A]
Length = 658
Score = 44.9 bits (105), Expect = 0.016, Method: Composition-based stats.
Identities = 32/191 (16%), Positives = 67/191 (35%), Gaps = 3/191 (1%)
Query: 127 FLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDA 186
FLI ++ I L ++L ++ P + ++ + SI+ P
Sbjct: 151 FLISLLLVIPISLALSIILLSPLPFLLLLFPFIFVFYPEQKYKSRAREVRDSIQDEIPFF 210
Query: 187 LDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELS-FLPNRQVAFENFYNR 245
+ L+ I SG +I + +R++ + + +E LL I ++ F + A E+
Sbjct: 211 VTLITIINASGTTIYEGMRKIVQ--FPLFKAMKKEALLIIRDIDFFGKSPLDALEHRARL 268
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
T R G I L E + + + +I+F
Sbjct: 269 TFNRDYSWFLAGYTSIIRSGGDIEAYLFQKAREFLNWLQFRWRFYSERTSFLGELIVILF 328
Query: 306 FLPVLILVIIG 316
+ + L+++
Sbjct: 329 LIFPMFLIVLA 339
>gi|229586069|ref|YP_002844571.1| type II secretion system protein [Sulfolobus islandicus M.16.27]
gi|228021119|gb|ACP56526.1| type II secretion system protein [Sulfolobus islandicus M.16.27]
Length = 658
Score = 44.9 bits (105), Expect = 0.017, Method: Composition-based stats.
Identities = 32/191 (16%), Positives = 67/191 (35%), Gaps = 3/191 (1%)
Query: 127 FLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDA 186
FLI ++ I L ++L ++ P + ++ + SI+ P
Sbjct: 151 FLISLLLVIPISLALSIILLSPLPFLLLLFPFIFVFYPEQKYKSRAREVRDSIQDEIPFF 210
Query: 187 LDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELS-FLPNRQVAFENFYNR 245
+ L+ I SG +I + +R++ + + +E LL I ++ F + A E+
Sbjct: 211 VTLITIINASGTTIYEGMRKIVQ--FPLFKAMKKEALLIIRDIDFFGKSPLDALEHRARL 268
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
T R G I L E + + + +I+F
Sbjct: 269 TFNRDYSWFLAGYTSIIRSGGDIEAYLFQKAREFLNWLQFRWRFYSERTSFLGELIVILF 328
Query: 306 FLPVLILVIIG 316
+ + L+++
Sbjct: 329 LIFPMFLIVLA 339
>gi|238621054|ref|YP_002915880.1| type II secretion system protein [Sulfolobus islandicus M.16.4]
gi|238382124|gb|ACR43212.1| type II secretion system protein [Sulfolobus islandicus M.16.4]
Length = 658
Score = 44.9 bits (105), Expect = 0.017, Method: Composition-based stats.
Identities = 32/191 (16%), Positives = 67/191 (35%), Gaps = 3/191 (1%)
Query: 127 FLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDA 186
FLI ++ I L ++L ++ P + ++ + SI+ P
Sbjct: 151 FLISLLLVIPISLALSIILLSPLPFLLLLFPFIFVFYPEQKYKSRAREVRDSIQDEIPFF 210
Query: 187 LDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELS-FLPNRQVAFENFYNR 245
+ L+ I SG +I + +R++ + + +E LL I ++ F + A E+
Sbjct: 211 VTLITIINASGTTIYEGMRKIVQ--FPLFKAMKKEALLIIRDIDFFGKSPLDALEHRARL 268
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
T R G I L E + + + +I+F
Sbjct: 269 TFNRDYSWFLAGYTSIIRSGGDIEAYLFQKAREFLNWLQFRWRFYSERTSFLGELIVILF 328
Query: 306 FLPVLILVIIG 316
+ + L+++
Sbjct: 329 LIFPMFLIVLA 339
>gi|227828862|ref|YP_002830642.1| type II secretion system protein [Sulfolobus islandicus M.14.25]
gi|227460658|gb|ACP39344.1| type II secretion system protein [Sulfolobus islandicus M.14.25]
Length = 658
Score = 44.9 bits (105), Expect = 0.017, Method: Composition-based stats.
Identities = 32/191 (16%), Positives = 67/191 (35%), Gaps = 3/191 (1%)
Query: 127 FLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDA 186
FLI ++ I L ++L ++ P + ++ + SI+ P
Sbjct: 151 FLISLLLVIPISLALSIILLSPLPFLLLLFPFIFVFYPEQKYKSRAREVRDSIQDEIPFF 210
Query: 187 LDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELS-FLPNRQVAFENFYNR 245
+ L+ I SG +I + +R++ + + +E LL I ++ F + A E+
Sbjct: 211 VTLITIINASGTTIYEGMRKIVQ--FPLFKAMKKEALLIIRDIDFFGKSPLDALEHRARL 268
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
T R G I L E + + + +I+F
Sbjct: 269 TFNRDYSWFLAGYTSIIRSGGDIEAYLFQKAREFLNWLQFRWRFYSERTSFLGELIVILF 328
Query: 306 FLPVLILVIIG 316
+ + L+++
Sbjct: 329 LIFPMFLIVLA 339
>gi|323478676|gb|ADX83914.1| type II secretion system protein [Sulfolobus islandicus HVE10/4]
Length = 658
Score = 44.9 bits (105), Expect = 0.017, Method: Composition-based stats.
Identities = 32/191 (16%), Positives = 67/191 (35%), Gaps = 3/191 (1%)
Query: 127 FLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDA 186
FLI ++ I L ++L ++ P + ++ + SI+ P
Sbjct: 151 FLISLLLVIPISLALSIILLSPLPFLLLLFPFIFVFYPEQKYKSRAREVRDSIQDEIPFF 210
Query: 187 LDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELS-FLPNRQVAFENFYNR 245
+ L+ I SG +I + +R++ + + +E LL I ++ F + A E+
Sbjct: 211 VTLITIINASGTTIYEGMRKIVQ--FPLFKAMKKEALLIIRDIDLFGKSPLDALEHRARL 268
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
T R G I L E + + + +I+F
Sbjct: 269 TFNRDYSWFLAGYTSIIRSGGDIEAYLFQKAREFLNWLQFRWRFYSERTSFLGELIVILF 328
Query: 306 FLPVLILVIIG 316
+ + L+++
Sbjct: 329 LIFPMFLIVLA 339
>gi|326204895|ref|ZP_08194748.1| hypothetical protein Cpap_0154 [Clostridium papyrosolvens DSM 2782]
gi|325984944|gb|EGD45787.1| hypothetical protein Cpap_0154 [Clostridium papyrosolvens DSM 2782]
Length = 290
Score = 44.9 bits (105), Expect = 0.017, Method: Composition-based stats.
Identities = 25/173 (14%), Positives = 63/173 (36%), Gaps = 8/173 (4%)
Query: 146 FQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALR 205
F + A I++ + + S ++ ++ I+ P + ++ S L
Sbjct: 112 FPMLSPAFIIVAVLMYFKESKRADERLRVKREQIESELPRFAATIAQSLK---SSRDVLT 168
Query: 206 RVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYG 265
+ E+ + A++ + A F R + + + LI R G
Sbjct: 169 MLENYKKNAGAAFRRELDIVTADMRS-SGYESALTRFEARMNSSRLSDVVRGLIGVLR-G 226
Query: 266 TSIGDSLRVLVSETRSERLMEAEKKAASLGPKL---TVPMIIFFLPVLILVII 315
++L + ++ L + +A + PK+ + M++ F+ +++I
Sbjct: 227 DDGAVYFQMLEHDFKAFELQRLKGEAQKIPPKIRIFSFIMLMCFMLTYLVIIA 279
>gi|260905509|ref|ZP_05913831.1| hypothetical protein BlinB_09275 [Brevibacterium linens BL2]
Length = 196
Score = 44.9 bits (105), Expect = 0.017, Method: Composition-based stats.
Identities = 29/137 (21%), Positives = 55/137 (40%), Gaps = 14/137 (10%)
Query: 190 LLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMD 249
+ IC+ SG+ I AL AE G +S + ++ A + ++
Sbjct: 69 VAICLTSGLPIPVALALTAEATGDRSG-----LGRVARSMTIGGQELSADDRLLPVLEVF 123
Query: 250 CVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPV 309
S+ G + + E R ++ AA+LG KL VP+ + LP
Sbjct: 124 EF---------SEHTGVGPAPLIESVAKELRDSSRRRRQEAAAALGVKLVVPLGVCILPA 174
Query: 310 LILVIIGPAILSIIDTM 326
+L+ + P ++S++ +
Sbjct: 175 FLLLSVVPVVISLLSDL 191
>gi|86609588|ref|YP_478350.1| type IV pilus assembly protein PilC [Synechococcus sp.
JA-2-3B'a(2-13)]
gi|86558130|gb|ABD03087.1| type IV pilus assembly protein PilC [Synechococcus sp.
JA-2-3B'a(2-13)]
Length = 408
Score = 44.9 bits (105), Expect = 0.018, Method: Composition-based stats.
Identities = 22/148 (14%), Positives = 56/148 (37%), Gaps = 16/148 (10%)
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
+ +G+S+ ++L + + + L + + AE+ N + + +
Sbjct: 72 FSRQFAALINAGVSMVRSLTIM--EEQTGNPKLKKYLRAIRAEVEAGKNLSDSIRPYPDA 129
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
+++Q+ G + + L L ++ + K+A +T P+++
Sbjct: 130 FD-----GLYCSMVQAGEVGGVLDEVLNRLAKLLEDMDRLQKQIKSA-----MTYPVVVT 179
Query: 306 FLPVL----ILVIIGPAILSIIDTMKDH 329
L VL +++ I P SI + +
Sbjct: 180 ILAVLIFLGMVLFILPTFESIYNDLGGE 207
>gi|320533996|ref|ZP_08034554.1| type II secretion system F domain protein [Actinomyces sp. oral
taxon 171 str. F0337]
gi|320133784|gb|EFW26174.1| type II secretion system F domain protein [Actinomyces sp. oral
taxon 171 str. F0337]
Length = 291
Score = 44.9 bits (105), Expect = 0.018, Method: Composition-based stats.
Identities = 28/168 (16%), Positives = 58/168 (34%), Gaps = 4/168 (2%)
Query: 149 RVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVA 208
+ + G + P ++ +K ++ A + L + + ++QA+
Sbjct: 70 WIVLAVAAGVLVLVWPLLFGGAKQEKLAAAKIEALATWSESLRDTIAGAVGLEQAIPATV 129
Query: 209 EDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRY-GTS 267
+ L E++ L + A F + ALI + R G
Sbjct: 130 ---YAAAPVLREDLALLADRMRVRVPLPTALRQFADDLDDPTADLIVSALIMNARLRGPG 186
Query: 268 IGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVII 315
+ L L RSE M A+ G + + +++ F V++L +
Sbjct: 187 LRQLLGALADTARSELDMRQRVSASRAGTRRSAQIVVIFSIVVMLGLA 234
>gi|18313580|ref|NP_560247.1| hypothetical protein PAE2779 [Pyrobaculum aerophilum str. IM2]
gi|18161124|gb|AAL64429.1| hypothetical protein PAE2779 [Pyrobaculum aerophilum str. IM2]
Length = 261
Score = 44.9 bits (105), Expect = 0.018, Method: Composition-based stats.
Identities = 28/148 (18%), Positives = 63/148 (42%), Gaps = 3/148 (2%)
Query: 170 NLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAEL 229
+LV R+S + + L +LL + +G+ + +A+ R+AE + ++ E+ L E+
Sbjct: 69 HLVSARRSHFENNFVYTLGVLLPLLAAGVPLGRAVTRLAE--VEEDKYIARELALAAREM 126
Query: 230 -SFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAE 288
+++ A + R R + LI+S + + L + + + A+
Sbjct: 127 IVMGASQEEALAHSAERVPSVTYRETVEVLIRSAKITQRVDAVLLARLDWLLRNKQVRAQ 186
Query: 289 KKAASLGPKLTVPMIIFFLPVLILVIIG 316
SL + ++ L L++ I+
Sbjct: 187 SLIRSLSLMFEIFVVAAMLLPLMVYIVA 214
>gi|159905295|ref|YP_001548957.1| type II secretion system protein [Methanococcus maripaludis C6]
gi|159886788|gb|ABX01725.1| type II secretion system protein [Methanococcus maripaludis C6]
Length = 352
Score = 44.9 bits (105), Expect = 0.019, Method: Composition-based stats.
Identities = 25/160 (15%), Positives = 59/160 (36%), Gaps = 7/160 (4%)
Query: 108 RSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVW 167
+ + + +++++ I ++ I + + ++I G P +
Sbjct: 111 YAGIADERVYFLKMIITSITTVILFIIYGVLTGNIFSGLSNGILLAVIIVVGGIFYPKLK 170
Query: 168 ISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIA 227
++ + + + + + +L SG SI +AL+ +A + + S E I
Sbjct: 171 LTLFRGEIKIQVLMSILHLISML----NSGASIQEALKNIANN--PEYGITSFEFRSIIK 224
Query: 228 EL-SFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGT 266
++ N A E RT++ +R LI + G
Sbjct: 225 DINQGGYNFVEALERARVRTKIFLMRQLYDQLILAANKGG 264
>gi|228949329|ref|ZP_04111592.1| hypothetical protein bthur0007_54450 [Bacillus thuringiensis
serovar monterrey BGSC 4AJ1]
gi|228810312|gb|EEM56670.1| hypothetical protein bthur0007_54450 [Bacillus thuringiensis
serovar monterrey BGSC 4AJ1]
Length = 327
Score = 44.9 bits (105), Expect = 0.019, Method: Composition-based stats.
Identities = 41/315 (13%), Positives = 104/315 (33%), Gaps = 41/315 (13%)
Query: 28 IYAVVIPSLGSGELEKR-----MKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRN 82
I+ ++ + +K +K + ++ ++ K+ D + L + + +
Sbjct: 16 IFILIATFFVKDKRKKYTAESILKDLENQKALMEKRSKEEQDIDIPYTFLDSFFNNF--S 73
Query: 83 FVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLL 142
F +KL ++ + A EY ++ L+ IFL+L
Sbjct: 74 FTEKLAPFNVIAEARRYEWFIGA---KEYWTIYIVGSTLLTGSIFLML------------ 118
Query: 143 EYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQ 202
+G VI +GF + +K + + + + ++
Sbjct: 119 ----NGHIGCVIGYA-LGFYIHRFMLHVHRRKYKFVENDRISIYMKTMTNSLHILGTVID 173
Query: 203 ALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSD 262
A+ V + EE+ +L + A + + + + L +D
Sbjct: 174 AIEEV---KPLVHPSIREELDKATFKLKQGKSVAEALSSLDKKYPYKELIFYHEMLDVAD 230
Query: 263 RYGTSIGDSLRVLVSETRSERLMEAEKKA----------ASLGPKLTVPMII-FFLPVLI 311
+ G ++L + + ++ + + A + + +P I FF+P
Sbjct: 231 KNGGRNTEALESIALDFEDRKVKQMQLYAETTQGVKSFRNTASIVIALPFIFKFFMPQAY 290
Query: 312 LVIIGPAILSIIDTM 326
+++ + SI+ +
Sbjct: 291 SILMRTPLGSIVFVL 305
>gi|330835388|ref|YP_004410116.1| type II secretion system protein [Metallosphaera cuprina Ar-4]
gi|329567527|gb|AEB95632.1| type II secretion system protein [Metallosphaera cuprina Ar-4]
Length = 615
Score = 44.5 bits (104), Expect = 0.020, Method: Composition-based stats.
Identities = 35/247 (14%), Positives = 88/247 (35%), Gaps = 21/247 (8%)
Query: 93 LVDENIVNKLRAAGFRSE---YSLNILLVVRLVVPIIFLILGI-------IWIFGYDKLL 142
+ +++ KL AG + ++ I + + L+ +++
Sbjct: 35 SISKSVEKKLLMAGLSIDPRIFAAQIFFYLSISSAFSALLAFFGIYIIVKLYLVYRLAKF 94
Query: 143 EYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQ 202
+ + ++I V + +V IS ++ R+ + + I ++SG+S
Sbjct: 95 AVLGLMLLMFAVIIPPVTYLLLNVNISQTIENRRIGLDAESAAFSAVFTIFLKSGLSPRI 154
Query: 203 ALRRVAEDIGGQSVPLSEEMLLTIAELSF-LPNRQVAFENFYNRTQMDCVRNATQALIQS 261
R+++ +++ L + F + + A + + + + + +
Sbjct: 155 LFERLSKTTAFNY--INQLTLYVSKRIDFLGESVEDALLRAIKVSPSRILNDFLLSYVSA 212
Query: 262 DRYGTSIGDSLRVLVSETRSERLMEAEKKAASLG-------PKLTVPMIIFFLPVLILVI 314
R G + D++ + + + A+ A L L I FFL +L+L
Sbjct: 213 VRSGAPVLDTVSAKAKDILRQLELAADIAADKLSGVGETYVIWLASGYITFFL-ILLLEA 271
Query: 315 IGPAILS 321
+ P I+
Sbjct: 272 LFPGIVG 278
>gi|255994748|ref|ZP_05427883.1| hypothetical protein GCWU000322_00832 [Eubacterium saphenum ATCC
49989]
gi|255993461|gb|EEU03550.1| hypothetical protein GCWU000322_00832 [Eubacterium saphenum ATCC
49989]
Length = 250
Score = 44.5 bits (104), Expect = 0.020, Method: Composition-based stats.
Identities = 34/203 (16%), Positives = 84/203 (41%), Gaps = 17/203 (8%)
Query: 117 LVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQ 176
++V ++ I + G+++ A I +G V F + +++ RQ
Sbjct: 18 VLVTIISACICMFAGLLFFRNV-----------FAAFIFLGGVIFM-RRAYCMHMLDVRQ 65
Query: 177 SSIKRAWPDALDLLLICVESGISIDQALRR---VAEDIGGQSVPLSEEMLLTIAELSFLP 233
+ + + D L L S+ +A+R+ V E + G+ L++E+ + ++
Sbjct: 66 AKMLSQFQDLLHSLSASFSVNKSMGEAIRQGRIVVELVHGKKAILAQELEIMHRSIAENN 125
Query: 234 NRQ-VAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAA 292
+++F R+ M+ + N + G +I ++ + + E KA
Sbjct: 126 VVDTEVWDDFAKRSGMEDIENFARTYSTCKETGGNIIKAVGDACEVISEKISISKEIKAI 185
Query: 293 SLGPKLTVPMIIFFLPVLILVII 315
+ K+ +I+ +P+++L ++
Sbjct: 186 TNQKKVEGRIIL-IMPIVVLTLL 207
>gi|159905296|ref|YP_001548958.1| type II secretion system protein [Methanococcus maripaludis C6]
gi|159886789|gb|ABX01726.1| type II secretion system protein [Methanococcus maripaludis C6]
Length = 298
Score = 44.5 bits (104), Expect = 0.021, Method: Composition-based stats.
Identities = 33/213 (15%), Positives = 90/213 (42%), Gaps = 15/213 (7%)
Query: 114 NILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQ 173
+ + + LV+ I+ ++L I F L F + +G+V+ + + + +
Sbjct: 32 RVFIGILLVITILPILLRIFLDFTLKTTLILTF-VYLGSVLSLPSIMY-----------E 79
Query: 174 KRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLP 233
+ + P AL ++++ ++SG S+ +A+ V + + ++++ + E
Sbjct: 80 SKMDKFDKNIPKALYVMVLSLDSGRSVVEAINEVIRSGILEVDAVFSKVVVLMTERKL-- 137
Query: 234 NRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAAS 293
+ + A N R + +I++ +YG + D+L+ L + ++++ + +
Sbjct: 138 SFEDAMILVSNSLDSKIFRQVGRLIIENRKYGGELADTLKKLAKTLEDLQNLKSQLMSVT 197
Query: 294 LGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
+I+ + +IG L++I +
Sbjct: 198 ANGLAVGLIILCGVIPATAGLIG-GYLTVISQL 229
>gi|86606612|ref|YP_475375.1| type IV pilus assembly protein PilC [Synechococcus sp. JA-3-3Ab]
gi|86555154|gb|ABD00112.1| type IV pilus assembly protein PilC [Synechococcus sp. JA-3-3Ab]
Length = 408
Score = 44.5 bits (104), Expect = 0.021, Method: Composition-based stats.
Identities = 22/148 (14%), Positives = 56/148 (37%), Gaps = 16/148 (10%)
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
+ +G+S+ ++L + + + L + + AE+ N + + +
Sbjct: 72 FSRQFAALINAGVSMVRSLTIM--EEQTGNPKLKKYLRAIRAEVEAGKNLSDSIRPYPDA 129
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
+++Q+ G + + L L ++ + K+A +T P+++
Sbjct: 130 FD-----GLYCSMVQAGEVGGVLDEVLNRLAKLLEDMDRLQKQIKSA-----MTYPVVVT 179
Query: 306 FLPVL----ILVIIGPAILSIIDTMKDH 329
L VL +++ I P SI + +
Sbjct: 180 ILAVLIFLGMVLFILPTFESIYNDLGGE 207
>gi|288930963|ref|YP_003435023.1| type II secretion system F domain protein [Ferroglobus placidus DSM
10642]
gi|288893211|gb|ADC64748.1| Type II secretion system F domain protein [Ferroglobus placidus DSM
10642]
Length = 635
Score = 44.5 bits (104), Expect = 0.022, Method: Composition-based stats.
Identities = 35/195 (17%), Positives = 71/195 (36%), Gaps = 7/195 (3%)
Query: 120 RLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSI 179
RL V ++G++ G L + + + +G +V + +++ +
Sbjct: 359 RLAVIPAAALIGVL--LGVLSHLHHIPGNLEFWTLALTVIGSAVSAVMLRKWIKE-DEKL 415
Query: 180 KRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAF 239
P + +L E+G A + AE+ PLS+ + + L +R AF
Sbjct: 416 SAQLPLYFNRVLSLAEAGKDTTTAFKLAAEEAR---PPLSKYVKVFAEMLDRGISRDRAF 472
Query: 240 ENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSE-TRSERLMEAEKKAASLGPKL 298
+ + T +R A + L ++ + L LV E R + A +
Sbjct: 473 QWLFRITPSTDLRLAARILSKTVDVSGRVTQVLISLVGELMRLNAFRKERDSVAKTYGGM 532
Query: 299 TVPMIIFFLPVLILV 313
V + FL + + +
Sbjct: 533 MVLAALLFLGIAVAI 547
Score = 36.8 bits (84), Expect = 5.1, Method: Composition-based stats.
Identities = 40/254 (15%), Positives = 85/254 (33%), Gaps = 20/254 (7%)
Query: 77 SKSLRNFVKKLNLKAILVDENIVNKLRAAG--FRSEYSLNILLV---VRLVVPIIFLILG 131
SLR F+ + +L E + + AG F +Y NI + + L + +I +LG
Sbjct: 61 KDSLRLFIPGMYPPQLL--EEYRDDFKKAGILFPEKYLRNISIASSTIALTLAVIGFLLG 118
Query: 132 IIWIFGYDKLLEY---------PFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRA 182
++ L P+ + A ++ + + R+ I
Sbjct: 119 TLFRSHIILSLPISIPIPDWTRPYIYAITAYTSQPFIFTILFVASLKGKISSRREDIDFN 178
Query: 183 WPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFL-PNRQVAFEN 241
LL ++GISI +A++ + +S+E + + + A
Sbjct: 179 LHTLYITLLGFAKAGISIMEAVKELVT---MDLGEISKEFARIYYAVRYGNTTLKAAMLE 235
Query: 242 FYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVP 301
T + + + ++ G +G + + ER + + L V
Sbjct: 236 VAATTPSAKLADLLRGIVGVMEAGGDLGRYMEERIESLEVERKIMYTEYLKKLEMIAEVY 295
Query: 302 MIIFFLPVLILVII 315
+ + ++V I
Sbjct: 296 LTVSLAIPTMVVSI 309
>gi|119715365|ref|YP_922330.1| type II secretion system protein [Nocardioides sp. JS614]
gi|119536026|gb|ABL80643.1| type II secretion system protein [Nocardioides sp. JS614]
Length = 411
Score = 44.5 bits (104), Expect = 0.022, Method: Composition-based stats.
Identities = 22/146 (15%), Positives = 61/146 (41%), Gaps = 12/146 (8%)
Query: 181 RAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFE 240
R +++G+++ +AL +AE + + L + + ++ + AF
Sbjct: 72 RDLAVFARQFATMIDAGLTMLRALSIMAEQVE--NPELRKVLRAVKQDVEAGHSLSSAFG 129
Query: 241 NFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV 300
+ ++ ++ G + ++R + +E + ++ KAA LT
Sbjct: 130 KWPRVFP-----PLMISMAKAGEAGGFLDTAMRQIADNFEAEVKLRSKIKAA-----LTY 179
Query: 301 PMIIFFLPVLILVIIGPAILSIIDTM 326
P ++FFL +++ + + ++ + + M
Sbjct: 180 PTVVFFLAIIMCIALLIFVVPVFEKM 205
>gi|225389633|ref|ZP_03759357.1| hypothetical protein CLOSTASPAR_03381 [Clostridium asparagiforme
DSM 15981]
gi|225044299|gb|EEG54545.1| hypothetical protein CLOSTASPAR_03381 [Clostridium asparagiforme
DSM 15981]
Length = 292
Score = 44.5 bits (104), Expect = 0.023, Method: Composition-based stats.
Identities = 28/161 (17%), Positives = 59/161 (36%), Gaps = 11/161 (6%)
Query: 141 LLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISI 200
L+ L V +I + + + + + V+KR+ I+ P + G ++
Sbjct: 108 LMAPLMPLAVPILIGLAVALWFSTYYSVFDFVKKRRKLIESEIPRF------ALTIGQNL 161
Query: 201 DQ---ALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQA 257
+ L+ + E+ TIA++ N + A +F R + + +
Sbjct: 162 ENDRDVLKILTSYRRVAGKDFGAELDQTIADMKTG-NYENALIHFETRIGSPMLSDVIRG 220
Query: 258 LIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKL 298
LI R G +++ + R +K+AA K+
Sbjct: 221 LIGVLR-GDDQRMYFKMICFDMRQIEQNNLKKEAAKRPKKI 260
>gi|254458997|ref|ZP_05072420.1| type II secretion system protein [Campylobacterales bacterium GD 1]
gi|207084268|gb|EDZ61557.1| type II secretion system protein [Campylobacterales bacterium GD 1]
Length = 414
Score = 44.5 bits (104), Expect = 0.023, Method: Composition-based stats.
Identities = 26/157 (16%), Positives = 56/157 (35%), Gaps = 10/157 (6%)
Query: 174 KRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLP 233
K++ A A+ L + +GISI +L +A L +++
Sbjct: 65 KKRKIKPDALIAAVRQLAVMTNAGISIHDSLSEIA--ASTDDQALKHVFGRLADDINAGH 122
Query: 234 NRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAE-KKAA 292
+ ENF + N + A++Q ++ ++L L R + KKA
Sbjct: 123 ALSSSMENFR-----FELGNLSIAMVQLGEKTGNLDEALYSLADMLEEIRANIIKFKKAM 177
Query: 293 SLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMKDH 329
+ + + M +++ + P I +++
Sbjct: 178 AYPRNVMIAMA--IAFTILISYVVPQFKDIFESLNAE 212
>gi|134046668|ref|YP_001098153.1| type II secretion system protein [Methanococcus maripaludis C5]
gi|132664293|gb|ABO35939.1| type II secretion system protein [Methanococcus maripaludis C5]
Length = 298
Score = 44.5 bits (104), Expect = 0.024, Method: Composition-based stats.
Identities = 31/213 (14%), Positives = 89/213 (41%), Gaps = 15/213 (7%)
Query: 114 NILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQ 173
+ + + L++ ++ ++L I F L F + +G+V+ + + + +
Sbjct: 32 RVFIGILLIITVLPILLKIFLGFTLKTTLILTF-VYLGSVLSLPTIMY-----------E 79
Query: 174 KRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLP 233
+ + P AL ++++ ++SG S+ +A+ V + + +++ + E
Sbjct: 80 SKMDKFDKNIPKALYVMVLSLDSGRSVVEAINEVIRSGIPEVDVVFSKVVTLMTERKL-- 137
Query: 234 NRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAAS 293
+ + A N R + +I++ +YG + D+L+ L + ++++ + +
Sbjct: 138 SFEDAMILVSNSLDSKIFRQVGRLIIENRKYGGELADTLKKLAKTLEDLQNLKSQLMSVT 197
Query: 294 LGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
+I+ + +IG L++I +
Sbjct: 198 ANGLAVGLIILCGVIPATAGLIG-GYLTVISQL 229
>gi|296141574|ref|YP_003648817.1| type II secretion system F domain protein [Tsukamurella
paurometabola DSM 20162]
gi|296029708|gb|ADG80478.1| Type II secretion system F domain protein [Tsukamurella
paurometabola DSM 20162]
Length = 197
Score = 44.5 bits (104), Expect = 0.024, Method: Composition-based stats.
Identities = 28/141 (19%), Positives = 54/141 (38%), Gaps = 10/141 (7%)
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQ 247
DL +C+ +G+ + L+ + L+ + A+ RT+
Sbjct: 59 DLFAVCLRAGMP---TADAARAVASTAAPALAAVLGRAAEMLALGSDPDTAW-----RTE 110
Query: 248 MDCVR--NATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
D + T+ L +S R G+S L L R++ A G + P+ +
Sbjct: 111 SDDAQVIALTRMLRRSARAGSSPAVGLADLARTERAQAEDRAVAAGERAGVMVAGPLGLC 170
Query: 306 FLPVLILVIIGPAILSIIDTM 326
FLP + + I P ++ + T+
Sbjct: 171 FLPAFVCLGIVPVVMGLAGTV 191
>gi|167006300|ref|YP_001661523.1| integral membrane protein [Streptomyces sp. HK1]
gi|166162382|gb|ABY83503.1| integral membrane protein [Streptomyces sp. HK1]
Length = 304
Score = 44.5 bits (104), Expect = 0.024, Method: Composition-based stats.
Identities = 34/187 (18%), Positives = 66/187 (35%), Gaps = 16/187 (8%)
Query: 127 FLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDA 186
+I + +P + ++G P S +++ A
Sbjct: 64 LVITAAVTTLLVWAWTGWPVHGILAGAAVLGLPFVLNPGTAASQRIER-----LEALAQW 118
Query: 187 LDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRT 246
L+ L ++GIS+ Q +R A+ P++ + L + AF +F +
Sbjct: 119 LNHLAGVHQAGISLPQTIRASAK---AAPGPIAPNVRALADRLRSGMEAEDAFAHFADEL 175
Query: 247 QMDCVRNATQALIQSDR--YGTSIGDSLRVLV----SETRSERLMEAEKKAASLGPKLTV 300
D V + L QS G + D+L L + R +EA++ ++ V
Sbjct: 176 A-DGVADHVVLLFQSHAVYKGPGLSDALEALAVTIHQQAADARDIEADRAKVRKSSRM-V 233
Query: 301 PMIIFFL 307
M+I +
Sbjct: 234 SMVICLV 240
>gi|222530411|ref|YP_002574293.1| type II secretion system protein [Caldicellulosiruptor bescii DSM
6725]
gi|222457258|gb|ACM61520.1| type II secretion system protein [Caldicellulosiruptor bescii DSM
6725]
Length = 303
Score = 44.1 bits (103), Expect = 0.027, Method: Composition-based stats.
Identities = 31/193 (16%), Positives = 71/193 (36%), Gaps = 15/193 (7%)
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
I+ ++ + +L V+LI F + + + ++ ++ + +
Sbjct: 75 FIMYYLYFAVFCFVLAVILNQLTYFVVLI-VSSFIVIKIILDYMSTSKRFRFEQRFGEFT 133
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQ 247
+ I ++ ++ L + E+ L +E+ ++E+ + A +NF R
Sbjct: 134 QNVAIMLKGTPNLMAVLFQAKEEEQDLR--LRKEIETILSEVQSGTTLEQALKNFKERNN 191
Query: 248 -MDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSE--RLMEAEKKAASLGPKL------ 298
+ V ++I ++ G SI D + + R KK A L +
Sbjct: 192 FSNIVSTWVDSVIFANLSGASISDVCMNASRKINDKLSRARLIRKKTARLKSVMIAIVSI 251
Query: 299 ---TVPMIIFFLP 308
T+ M++F P
Sbjct: 252 ILITLGMVLFLFP 264
>gi|172041535|ref|YP_001801249.1| hypothetical protein cur_1856 [Corynebacterium urealyticum DSM
7109]
gi|171852839|emb|CAQ05815.1| putative membrane protein [Corynebacterium urealyticum DSM 7109]
Length = 386
Score = 44.1 bits (103), Expect = 0.029, Method: Composition-based stats.
Identities = 21/136 (15%), Positives = 51/136 (37%), Gaps = 11/136 (8%)
Query: 187 LDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRT 246
LD+ + + +G+ + +A G + + + +L P ++
Sbjct: 259 LDIFALALAAGLPVAKAWGVAVGPGEGPAHDVEP-----LLQLGAGPAAWEPLKS----- 308
Query: 247 QMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFF 306
+ + +Q R GT + + + R L + E A + + P+ + F
Sbjct: 309 -HEHYGPVARQALQQTRAGTRLAEGAKAQARRIRQHSLNQVEAGAERVLIAVAAPLTLCF 367
Query: 307 LPVLILVIIGPAILSI 322
LP +L+ + P ++ +
Sbjct: 368 LPAFVLIGLVPLVIGL 383
>gi|312794258|ref|YP_004027181.1| type II secretion system f domain [Caldicellulosiruptor
kristjanssonii 177R1B]
gi|312181398|gb|ADQ41568.1| Type II secretion system F domain [Caldicellulosiruptor
kristjanssonii 177R1B]
Length = 303
Score = 44.1 bits (103), Expect = 0.030, Method: Composition-based stats.
Identities = 28/193 (14%), Positives = 71/193 (36%), Gaps = 6/193 (3%)
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
I+ ++ + +L V+++ F + + + ++ ++ + +
Sbjct: 75 FIMYYLYFAVFCFVLAVILNQLTYFVVIVTSS-FIVIKIVLDYISASKKFKFEQKFGEFT 133
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQ 247
+ I ++ ++ L + ED L +E+ ++E+ + A +NF R
Sbjct: 134 QSVAIMLKGTPNLIAVLFQAKEDEQDSR--LKKEIETILSEVQSGTTLEQALKNFKERNN 191
Query: 248 -MDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSE--RLMEAEKKAASLGPKLTVPMII 304
+ V ++I ++ G S+ D + + R KK A L + + I
Sbjct: 192 FSNVVSTWVDSVIFANLSGASLSDVCMNAARKINDKLSRARLIRKKTARLKSVMLAIIGI 251
Query: 305 FFLPVLILVIIGP 317
L + ++ P
Sbjct: 252 ITLTLGFILFFFP 264
>gi|284173203|ref|ZP_06387172.1| hypothetical protein Ssol98_00900 [Sulfolobus solfataricus 98/2]
gi|261601170|gb|ACX90773.1| Type II secretion system F domain protein [Sulfolobus solfataricus
98/2]
Length = 658
Score = 44.1 bits (103), Expect = 0.030, Method: Composition-based stats.
Identities = 27/194 (13%), Positives = 67/194 (34%), Gaps = 4/194 (2%)
Query: 125 IIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGF-CAPSVWISNLVQKRQSSIKRAW 183
+ + ++ ++ + L + +++ + F P + ++ + I+
Sbjct: 148 VAYFLVSLLVVIPVSLALSIALLSPLPFLLIFFPLTFIFYPEQKYKSRAREIRDDIQDEI 207
Query: 184 PDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELS-FLPNRQVAFENF 242
P + L+ I SG +I + +R++ + + +E LL I ++ F + A E+
Sbjct: 208 PFFVTLITIINASGTTIYEGMRKILQ--FPIFKAMKKEALLIIRDIEFFGKSPLDALEHR 265
Query: 243 YNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPM 302
T R G I L E + + + +
Sbjct: 266 SRLTLNRDYSWFLAGYSSIIRSGGDIEAYLFQKAREFLNWLQFRWRFYSERTSFLGELIV 325
Query: 303 IIFFLPVLILVIIG 316
I+F + + L+ +
Sbjct: 326 ILFLIFPMFLIALA 339
>gi|110667294|ref|YP_657105.1| type II secretion system, transmembrane protein TadC [Haloquadratum
walsbyi DSM 16790]
gi|109625041|emb|CAJ51457.1| type II secretion system, transmembrane protein TadC [Haloquadratum
walsbyi DSM 16790]
Length = 645
Score = 44.1 bits (103), Expect = 0.030, Method: Composition-based stats.
Identities = 28/163 (17%), Positives = 54/163 (33%), Gaps = 11/163 (6%)
Query: 123 VPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRA 182
I+F ++G++ L + + L+GYV + P ++ + +
Sbjct: 372 AMIVFTLIGVV-----GAGLSVGLDVDLLVASLVGYVSYSIPVGVVAVRRARSDDAKDHE 426
Query: 183 WPDALDLLLICVESGISIDQALRRVAED-----IGGQSVPLSEEMLLTIAELSFLPN-RQ 236
D + + + G A+ VA D + L+ + LT A + R
Sbjct: 427 LKDFVHAISGHINLGRPFVDAVTHVASDVDLGPLSNDVTDLASNLQLTTAHGGVETDLRT 486
Query: 237 VAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSET 279
A + F R +I + G+ G L +E
Sbjct: 487 AALDRFVTRVGTPLAEQTVGLVIGAMDAGSDTGVVFETLQAEV 529
>gi|15899402|ref|NP_344007.1| hypothetical protein SSO2679 [Sulfolobus solfataricus P2]
gi|13816000|gb|AAK42797.1| Hypothetical protein SSO2679 [Sulfolobus solfataricus P2]
Length = 662
Score = 44.1 bits (103), Expect = 0.032, Method: Composition-based stats.
Identities = 27/194 (13%), Positives = 67/194 (34%), Gaps = 4/194 (2%)
Query: 125 IIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGF-CAPSVWISNLVQKRQSSIKRAW 183
+ + ++ ++ + L + +++ + F P + ++ + I+
Sbjct: 152 VAYFLVSLLVVIPVSLALSIALLSPLPFLLIFFPLTFIFYPEQKYKSRAREIRDDIQDEI 211
Query: 184 PDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELS-FLPNRQVAFENF 242
P + L+ I SG +I + +R++ + + +E LL I ++ F + A E+
Sbjct: 212 PFFVTLITIINASGTTIYEGMRKILQ--FPIFKAMKKEALLIIRDIEFFGKSPLDALEHR 269
Query: 243 YNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPM 302
T R G I L E + + + +
Sbjct: 270 SRLTLNRDYSWFLAGYSSIIRSGGDIEAYLFQKAREFLNWLQFRWRFYSERTSFLGELIV 329
Query: 303 IIFFLPVLILVIIG 316
I+F + + L+ +
Sbjct: 330 ILFLIFPMFLIALA 343
>gi|157502153|ref|YP_001485252.1| hypothetical protein pBMB67_066 [Bacillus thuringiensis]
gi|87133458|gb|ABD24368.1| hypothetical membrane protein [Bacillus thuringiensis]
Length = 305
Score = 43.7 bits (102), Expect = 0.035, Method: Composition-based stats.
Identities = 29/207 (14%), Positives = 75/207 (36%), Gaps = 14/207 (6%)
Query: 122 VVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKR 181
++ I+ ++G+I +G F + V + VG P + + ++ + ++
Sbjct: 73 MLLIVGSLIGVIIFYG--------FFISVNFAVFGVIVGLVLPRIMMFYKKKRYELYVEE 124
Query: 182 AWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFEN 241
L+ L + + + A++ + + E L+ E + + +FE
Sbjct: 125 QLMLYLNSLANAMSAYENPSFAIKSILPLMQSPIKEDVENCLIVHLE---GTSIKESFEP 181
Query: 242 FYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVP 301
N+ + ++ L + G L + E + +++ +A+ KA + +
Sbjct: 182 LINKYKYKNLKLFHDMLDLISKTGKDEDGLLMRIADEFQQKKIYKAKLKAGMEPKRSSFK 241
Query: 302 MIIFF---LPVLILVIIGPAILSIIDT 325
I P + L + ++ T
Sbjct: 242 KIAIMTASFPFMFLAVTADDYIAFAGT 268
>gi|326328877|ref|ZP_08195211.1| type II secretion system protein [Nocardioidaceae bacterium
Broad-1]
gi|325953362|gb|EGD45368.1| type II secretion system protein [Nocardioidaceae bacterium
Broad-1]
Length = 71
Score = 43.7 bits (102), Expect = 0.035, Method: Composition-based stats.
Identities = 15/70 (21%), Positives = 32/70 (45%)
Query: 258 LIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGP 317
+ ++ G + ++ L + E E +A S+G K VP+ I LP +L+ + P
Sbjct: 1 MARAQATGAPVATTVERLADDLTRNARAEVEDRARSVGVKAAVPLGICLLPAFLLLGVVP 60
Query: 318 AILSIIDTMK 327
+ ++ +
Sbjct: 61 VVGGLLSNLG 70
>gi|302669441|ref|YP_003829401.1| Flp pilus assembly protein TadB [Butyrivibrio proteoclasticus B316]
gi|302393914|gb|ADL32819.1| Flp pilus assembly protein TadB [Butyrivibrio proteoclasticus B316]
Length = 254
Score = 43.7 bits (102), Expect = 0.035, Method: Composition-based stats.
Identities = 35/208 (16%), Positives = 76/208 (36%), Gaps = 8/208 (3%)
Query: 125 IIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWP 184
II+L+ G++ + +L F AV +I + + N K+ I +
Sbjct: 23 IIYLLQGLLIAIMFGRL----FFDSWIAVGIISPIAIPWTLMQRKNQKNKKCRLIGIQFK 78
Query: 185 DALDLLLICVESGISIDQALRRVAEDIG---GQSVPLSEEMLLTIAELSFLPNRQVAFEN 241
DA+ +L +++G SI+ A D+ G++ +S + L +
Sbjct: 79 DAIFSVLTSLKAGFSIENAFMEARRDMDLLYGKNSDISFYLSRISKGLRNNVPLEKLIFG 138
Query: 242 FYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVP 301
T +++ + R G ++ + + +S + +E E + + K
Sbjct: 139 MGKETTNTDIQDFALVFSVAKRNGGNMTEIIDRTISVISGKLEVEKEIEVL-ISAKRLEA 197
Query: 302 MIIFFLPVLILVIIGPAILSIIDTMKDH 329
I+ +P I+ I D + +
Sbjct: 198 RIMNMVPFFIIFYISITSPGFFDALYHN 225
>gi|291442507|ref|ZP_06581897.1| integral membrane protein [Streptomyces ghanaensis ATCC 14672]
gi|291345402|gb|EFE72358.1| integral membrane protein [Streptomyces ghanaensis ATCC 14672]
Length = 285
Score = 43.7 bits (102), Expect = 0.035, Method: Composition-based stats.
Identities = 30/154 (19%), Positives = 51/154 (33%), Gaps = 4/154 (2%)
Query: 154 ILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGG 213
+L+G P + V + A + L + G+ ++QA+ G
Sbjct: 47 VLLGAAVIGVPWLITPAQVAAGRIGQLEALSEWTQRLAGLLRLGMGLEQAMI---TSRKG 103
Query: 214 QSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDR-YGTSIGDSL 272
L+E++ L + A F + T ALI S G + +L
Sbjct: 104 APDALAEQITGLSDRLRLGWRPEEALRAFADELDDVTADKVTAALILSVNDRGPGLAQAL 163
Query: 273 RVLVSETRSERLMEAEKKAASLGPKLTVPMIIFF 306
L R E + +A P+ TV + F
Sbjct: 164 EDLAGTVREEVAKKRGIEADRAKPRTTVRWMTFI 197
>gi|169834864|ref|YP_001715936.1| type II secretion system protein F [Clostridium botulinum A3 str.
Loch Maree]
gi|169408971|gb|ACA57381.1| bacterial type II secretion system protein F domain [Clostridium
botulinum A3 str. Loch Maree]
Length = 308
Score = 43.7 bits (102), Expect = 0.036, Method: Composition-based stats.
Identities = 46/235 (19%), Positives = 87/235 (37%), Gaps = 31/235 (13%)
Query: 65 KDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVP 124
++ +L + K + +K N+ E I K AG ++ V
Sbjct: 36 QNDLKRQLADKSRKEKFSILKFFNINI----EKIERKFLKAGINAD-----------VEN 80
Query: 125 IIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWP 184
IIF L I + ++ L + I++G +G+ +I + R I + +
Sbjct: 81 IIFSYLLIATLILIIGIIINNTILSLIVPIVLGSIGY----AYIEHKGTNRVIEINKQFI 136
Query: 185 DAL----DLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFE 240
+AL D L I + A++ V + PL E + I E+ N +
Sbjct: 137 NALIDIGDYLRIDSN----LSNAIKNVT---PNIAYPLKGEFIYIIKEIDSNTNILDTLK 189
Query: 241 NFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLG 295
+F R V +++ ++ ++ D ++ R +RL + EK A L
Sbjct: 190 HFDYRVNSTVVNTWVDSMLFANDKRANVSDLCIKHSAKVR-KRLTQNEKLNAKLS 243
>gi|332797852|ref|YP_004459352.1| archaeal flagella assembly protein [Acidianus hospitalis W1]
gi|332695587|gb|AEE95054.1| archaeal flagella assembly protein [Acidianus hospitalis W1]
Length = 612
Score = 43.7 bits (102), Expect = 0.038, Method: Composition-based stats.
Identities = 29/233 (12%), Positives = 78/233 (33%), Gaps = 18/233 (7%)
Query: 96 ENIVNKLRAAG---FRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGA 152
++ KL AG ++ I + L + +++G L + +
Sbjct: 38 KSYEQKLLMAGSSEDPQLFTAKIFFYLLLSSVLSVVLIGFGLFVIIKFYLVFRLAKYLAL 97
Query: 153 VILIGYVGFCAP-------SVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALR 205
++ G P +S ++ R+ + + I + SG++
Sbjct: 98 SFMMIIFGLIIPPVTYLANIATLSQKIESRRIGVDAELSAFTSVFAIFLRSGLTPRLMFD 157
Query: 206 RVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYG 265
R++ + S + ++ + + A + + +++ A + + R G
Sbjct: 158 RLSSSSAFHYIN-SITLYVSKRIRYLGESVEDAMLHASQISPSKLLKDFFLAYVTAVRTG 216
Query: 266 TSIGDSLRVLVSETRSERLMEAEKKAASLG-------PKLTVPMIIFFLPVLI 311
+ +++ + + + A A L L+ I+FFL +++
Sbjct: 217 APVINTIEAKAKDILDQLQLRASLAADRLSGIAESYVIWLSSGYIMFFLMMVL 269
>gi|283797116|ref|ZP_06346269.1| conserved hypothetical protein [Clostridium sp. M62/1]
gi|291075533|gb|EFE12897.1| conserved hypothetical protein [Clostridium sp. M62/1]
Length = 309
Score = 43.7 bits (102), Expect = 0.038, Method: Composition-based stats.
Identities = 33/197 (16%), Positives = 71/197 (36%), Gaps = 20/197 (10%)
Query: 114 NILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQ 173
N ++ + +F + G + I + L ++ P ++
Sbjct: 76 NRFSMICAISLALFCLGGSLAILLGNFFLAP----------VMAVGFLFLPFWYVKLTAS 125
Query: 174 KRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFL- 232
+ + AL ++ + + + V E+I + P+S+ + ++ +
Sbjct: 126 HYKRDVSAELETALSVITTAY---LRTEDIVTAVEENIAYLNPPVSKVFQNFLTQIKLVN 182
Query: 233 PNRQVAFENFYNRTQMDCVRNATQALI--QSDRYGTSIGDSLRVLVSETRSERLMEAE-K 289
PN + A R + R AL Q DR S+ +L +V++ R + AE +
Sbjct: 183 PNVEAALRGMQGRIDNEVFREWCDALSDCQHDR---SLKTTLTPIVAKLSDMRNVNAELE 239
Query: 290 KAASLGPKLTVPMIIFF 306
+ K + M+IF
Sbjct: 240 YLIAEPRKEFLIMVIFV 256
>gi|228942720|ref|ZP_04105248.1| Hypothetical membrane protein [Bacillus thuringiensis serovar
berliner ATCC 10792]
gi|228975831|ref|ZP_04136361.1| Hypothetical membrane protein [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228982328|ref|ZP_04142604.1| Hypothetical membrane protein [Bacillus thuringiensis Bt407]
gi|228777433|gb|EEM25724.1| Hypothetical membrane protein [Bacillus thuringiensis Bt407]
gi|228783857|gb|EEM31906.1| Hypothetical membrane protein [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228816931|gb|EEM63028.1| Hypothetical membrane protein [Bacillus thuringiensis serovar
berliner ATCC 10792]
Length = 305
Score = 43.7 bits (102), Expect = 0.039, Method: Composition-based stats.
Identities = 29/207 (14%), Positives = 75/207 (36%), Gaps = 14/207 (6%)
Query: 122 VVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKR 181
++ I+ ++G+I +G F + V + VG P + + ++ + ++
Sbjct: 73 MLLIVGSLIGVIIFYG--------FFISVNFAVFGVIVGLVLPRIMMFYKKKRYELYVEE 124
Query: 182 AWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFEN 241
L+ L + + + A++ + + E L+ E + + +FE
Sbjct: 125 QLMLYLNSLANAMSAYENPSFAIKSILPLMQSPIKEDVENCLIVHLE---GTSIKESFEP 181
Query: 242 FYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVP 301
N+ + ++ L + G L + E + +++ +A+ KA + +
Sbjct: 182 LINKYKYKNLKLFHDMLDLISKTGKDEDGLLMRIADEFQQKKIYKAKLKAGMEPKRSSFK 241
Query: 302 MIIFF---LPVLILVIIGPAILSIIDT 325
I P + L + ++ T
Sbjct: 242 KIAIMTASFPFMFLAVTADDYIAFAGT 268
>gi|126459953|ref|YP_001056231.1| type II secretion system protein [Pyrobaculum calidifontis JCM
11548]
gi|126249674|gb|ABO08765.1| type II secretion system protein [Pyrobaculum calidifontis JCM
11548]
Length = 256
Score = 43.7 bits (102), Expect = 0.039, Method: Composition-based stats.
Identities = 19/113 (16%), Positives = 38/113 (33%), Gaps = 2/113 (1%)
Query: 167 WISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTI 226
W+ ++ P L ++ V +G+ + +A VA +G +L++
Sbjct: 25 WLGFRRAVFVYRLEGQIPQVLRMVADAVGAGMGLREAFEVVAG-MGLYPANAVFRRVLSL 83
Query: 227 AELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSET 279
AE+ A + R + + R G +G+ L V
Sbjct: 84 AEV-GGLAVDEALWRVASELPSPNFRRFALIVAEGARSGARLGEVLGVAARSF 135
>gi|332534352|ref|ZP_08410193.1| Flp pilus assembly protein TadB [Pseudoalteromonas haloplanktis
ANT/505]
gi|332036171|gb|EGI72645.1| Flp pilus assembly protein TadB [Pseudoalteromonas haloplanktis
ANT/505]
Length = 291
Score = 43.7 bits (102), Expect = 0.039, Method: Composition-based stats.
Identities = 20/141 (14%), Positives = 59/141 (41%), Gaps = 5/141 (3%)
Query: 152 AVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDI 211
+ +I V F + + +L + + + + + ++ + C+ +G+S+ Q+++ E
Sbjct: 89 SAFIISIVVFVTCFITVIDLAHYKLAKFEHHFLEFIETVQSCLSTGLSLQQSMQFADEH- 147
Query: 212 GGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDS 271
+ ++ L + +S + + +F R + VR ++I + + D
Sbjct: 148 --ADPYIKKQSSLLLQRMSMGSDAETSFAPLIERYNCETVRLFAHSIITHTQSQCDLTDM 205
Query: 272 LRVLVSET--RSERLMEAEKK 290
L+ + + R+ + + K
Sbjct: 206 LKSVCNMMSLRTLDRQQLKAK 226
>gi|289770835|ref|ZP_06530213.1| predicted protein [Streptomyces lividans TK24]
gi|289701034|gb|EFD68463.1| predicted protein [Streptomyces lividans TK24]
Length = 281
Score = 43.7 bits (102), Expect = 0.040, Method: Composition-based stats.
Identities = 17/104 (16%), Positives = 39/104 (37%), Gaps = 3/104 (2%)
Query: 217 PLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLV 276
P+ + + AE+ A+ + + L +++ G + L
Sbjct: 167 PVGDALGRGAAEVRLGGEPAGAWRGLAA---VPGAVPLARLLERAEVSGLPAAGPVARLA 223
Query: 277 SETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAIL 320
++ R++ +A +T P+ + FLP I V + P ++
Sbjct: 224 AQARADWARTTTVRARRAAVMVTAPVGLCFLPAFIAVGVLPVVI 267
>gi|317403494|gb|EFV83999.1| hypothetical protein HMPREF0005_03141 [Achromobacter xylosoxidans
C54]
Length = 303
Score = 43.7 bits (102), Expect = 0.041, Method: Composition-based stats.
Identities = 36/207 (17%), Positives = 64/207 (30%), Gaps = 20/207 (9%)
Query: 102 LRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGF 161
L G R + RL +PI+ L + + ++L+ +
Sbjct: 74 LLQGGVRQSPA----FYARLALPILAGAL--------LAWTLLGWLSGLVTLVLLAVFAY 121
Query: 162 CAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEE 221
+W+ + Q P LD ++ V G S+ A + PL E
Sbjct: 122 FL--LWLRADRR--QRRRVSQLPAFLDNIVRLVTIGNSMAAAFQTA---AASTDEPLREV 174
Query: 222 MLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRS 281
+ A A + M + + + R+G L + + R
Sbjct: 175 VETAAALSRSAKELDAALVQVSRQYDMKELYMVAAVVSVALRFGGRSDQVLERMAAFMRD 234
Query: 282 ERLMEAEKKAASLGPKLTVPMIIFFLP 308
AE A+S +L+ I+ LP
Sbjct: 235 IGQARAELSASSAEIRLSA-WILALLP 260
>gi|149174858|ref|ZP_01853482.1| MSHA biogenesis protein MshG [Planctomyces maris DSM 8797]
gi|148846195|gb|EDL60534.1| MSHA biogenesis protein MshG [Planctomyces maris DSM 8797]
Length = 368
Score = 43.7 bits (102), Expect = 0.041, Method: Composition-based stats.
Identities = 36/145 (24%), Positives = 59/145 (40%), Gaps = 9/145 (6%)
Query: 182 AWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFEN 241
+ D D L+ + +GI +DQ LR A + S E++ L I E + + A +
Sbjct: 16 SLVDLNDELIAMIRAGIPLDQGLRNAAAHLNRDSKQFIEQLALKIEE---GSSLEEAIQL 72
Query: 242 FYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVP 301
++ + L + R G + ++L S RS + E A L P + +
Sbjct: 73 GADKLP----PSYISLLKSAIRMG-KLPEALSAYTSFARSRMELRQEIGMALLYPGIVLV 127
Query: 302 MIIFFLPVLILVIIGPAILSIIDTM 326
M FFL + II P +L I
Sbjct: 128 M-AFFLSLFACFIIFPKLLVIHQMF 151
>gi|228989138|ref|ZP_04149156.1| hypothetical protein bthur0001_57510 [Bacillus thuringiensis
serovar tochigiensis BGSC 4Y1]
gi|228770565|gb|EEM19112.1| hypothetical protein bthur0001_57510 [Bacillus thuringiensis
serovar tochigiensis BGSC 4Y1]
Length = 324
Score = 43.7 bits (102), Expect = 0.042, Method: Composition-based stats.
Identities = 43/325 (13%), Positives = 100/325 (30%), Gaps = 39/325 (12%)
Query: 15 AVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRT 74
+ V IF L+ + +KR K A + Q ++K S +
Sbjct: 4 IILALIGVCIFILLATFFVK-------DKRKKYTAESILKDLENQKALMEKRSKEEQDID 56
Query: 75 RDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIW 134
L +F + L N++ + R + + I +
Sbjct: 57 IPYTFLDSFFNNFSFTEKLAPSNVIAEARR--------YEWFIGAKEYWTI--------Y 100
Query: 135 IFGYDKLLEYPFQLRVG--AVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLI 192
I G L F + G ++ +GF + +K + + +
Sbjct: 101 IVGSTLLTGSIFLMLNGHIGCVIGYVLGFYIHRFMLHVHRRKYKFVENDRISIYMKTMTN 160
Query: 193 CVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVR 252
+ ++ A+ V + EE+ +L + A + + +
Sbjct: 161 SLHILGTVIDAIEEV---KPLVHSSIREELDKATFKLKQGKSVAEALSSLDKKYPYKELI 217
Query: 253 NATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKA----------ASLGPKLTVPM 302
+ L +D+ G ++L + + ++ + + A + + +P
Sbjct: 218 FYHEMLDVADKNGGRNTEALESIALDFEDRKVKQMQLYAETTQGVKSFRNTASIVIALPF 277
Query: 303 II-FFLPVLILVIIGPAILSIIDTM 326
I FF+P +++ + SI+ +
Sbjct: 278 IFKFFMPQAYSILMRTPLGSIVFVL 302
>gi|326943832|gb|AEA19722.1| Hypothetical membrane protein [Bacillus thuringiensis serovar
chinensis CT-43]
Length = 316
Score = 43.3 bits (101), Expect = 0.045, Method: Composition-based stats.
Identities = 29/207 (14%), Positives = 75/207 (36%), Gaps = 14/207 (6%)
Query: 122 VVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKR 181
++ I+ ++G+I +G F + V + VG P + + ++ + ++
Sbjct: 84 MLLIVGSLIGVIIFYG--------FFISVNFAVFGVIVGLVLPRIMMFYKKKRYELYVEE 135
Query: 182 AWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFEN 241
L+ L + + + A++ + + E L+ E + + +FE
Sbjct: 136 QLMLYLNSLANAMSAYENPSFAIKSILPLMQSPIKEDVENCLIVHLE---GTSIKESFEP 192
Query: 242 FYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVP 301
N+ + ++ L + G L + E + +++ +A+ KA + +
Sbjct: 193 LINKYKYKNLKLFHDMLDLISKTGKDEDGLLMRIADEFQQKKIYKAKLKAGMEPKRSSFK 252
Query: 302 MIIFF---LPVLILVIIGPAILSIIDT 325
I P + L + ++ T
Sbjct: 253 KIAIMTASFPFMFLAVTADDYIAFAGT 279
>gi|154151444|ref|YP_001405062.1| type II secretion system protein [Candidatus Methanoregula boonei
6A8]
gi|153999996|gb|ABS56419.1| type II secretion system protein [Methanoregula boonei 6A8]
Length = 224
Score = 43.3 bits (101), Expect = 0.045, Method: Composition-based stats.
Identities = 31/206 (15%), Positives = 72/206 (34%), Gaps = 14/206 (6%)
Query: 133 IWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLI 192
+ +L + V ++++ G + + + S + R+ +I P A++ +
Sbjct: 1 MLFLNQYGVLLGTIFVVVFSLLVFGGITYAIFIAYPSVVAGNRRRNIDATLPYAINYITS 60
Query: 193 CVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELS-FLPNRQVAFENFYNRTQMDCV 251
+GI+ + R + + S E EL F + A + T +
Sbjct: 61 MSTAGITPAEIFRLLGD--SPIYGESSVEARYIARELDIFGRDLIDALRIVSSSTPSLRM 118
Query: 252 RNATQALIQSDRYGTSIGDSLR----VLVSETRSERLMEAEKKAASLGPKLTVP----MI 303
+ Q + S G ++ + R E R + + + A +T +
Sbjct: 119 KEFLQGAMASISSGGNLTEYFRTKAAQYALENRQTQKLFLDTLALISESYVTAMVAGTLF 178
Query: 304 IFFLPVLILVIIG---PAILSIIDTM 326
+ L ++ V+ G P L ++ +
Sbjct: 179 LIILQSIMSVLGGDSKPIFLYVVIYL 204
>gi|167006299|ref|YP_001661522.1| integral membrane protein [Streptomyces sp. HK1]
gi|166162381|gb|ABY83502.1| integral membrane protein [Streptomyces sp. HK1]
Length = 294
Score = 43.3 bits (101), Expect = 0.046, Method: Composition-based stats.
Identities = 28/182 (15%), Positives = 62/182 (34%), Gaps = 12/182 (6%)
Query: 143 EYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQ 202
PF L + + + + P ++ + ++ A LD + + + Q
Sbjct: 116 PLPFALPALVSLGMAVLFWFWPVKEVARDAAGVRLIVRHAAASYLDRVALARIANSGAAQ 175
Query: 203 ALRRVAEDIGGQSVPLSEEMLLTIAELS-FLPNRQVAFENFYNRTQMDCVRNATQALIQS 261
AL + AE G M E A + + + + L +
Sbjct: 176 ALTQTAEVGDGFIFV---RMRQIFHEADLAGVTVWDALKQLGDELDIPELTRPADTLALA 232
Query: 262 DRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVP-------MIIFFLPVLILVI 314
G ++ +L+ + R L +A+ +A + + +P M+ F + + + I
Sbjct: 233 GD-GAAVYTTLQAQARQLRIALLSDAKAEANAASAAMILPVTAGVILMLTFVMIPITITI 291
Query: 315 IG 316
+G
Sbjct: 292 LG 293
>gi|152967077|ref|YP_001362861.1| type II secretion system protein [Kineococcus radiotolerans
SRS30216]
gi|151361594|gb|ABS04597.1| type II secretion system protein [Kineococcus radiotolerans
SRS30216]
Length = 291
Score = 43.3 bits (101), Expect = 0.046, Method: Composition-based stats.
Identities = 32/183 (17%), Positives = 65/183 (35%), Gaps = 4/183 (2%)
Query: 133 IWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLI 192
+ + +L V A I IG + C + N + R + + + L
Sbjct: 57 VLLGVGAGVLTLVLTRWVVAGIGIGLLVACWQRLLGGNAEENRGIARLEGLANWTESLRD 116
Query: 193 CVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVR 252
+ I ++QA+ A + L + L + L A F +
Sbjct: 117 TIAGAIGLEQAIPATA---ATSAPVLRPSLNLLVDRLRVREPLPDALLRFADDVDDPSAD 173
Query: 253 NATQALIQSDRY-GTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLI 311
AL+ + R G + D L L + TR E + +A+ + +V +++ + ++
Sbjct: 174 VVVAALVLNARLRGPGLRDVLTALAASTREELDVRRRIEASRRSIRRSVQIVLLIVLGVM 233
Query: 312 LVI 314
V+
Sbjct: 234 GVL 236
>gi|332982952|ref|YP_004464393.1| Type II secretion system F domain-containing protein [Mahella
australiensis 50-1 BON]
gi|332700630|gb|AEE97571.1| Type II secretion system F domain protein [Mahella australiensis
50-1 BON]
Length = 301
Score = 43.3 bits (101), Expect = 0.048, Method: Composition-based stats.
Identities = 32/208 (15%), Positives = 73/208 (35%), Gaps = 16/208 (7%)
Query: 72 LRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILG 131
R + +R K A L + N + AA ++ ++ L +++ G
Sbjct: 30 RRRINRMLIRKQPDKFKPFAFLGETNDKLVMAAAELIPGMDPDMFIIYGL-----YIMAG 84
Query: 132 IIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLL 191
+I G + Y F L V ++L +++ N R +++ + +
Sbjct: 85 VIAAAGITGNILYGFLLDVLIIVLTM--------MYLDNRRSNRIYKLEQQFGAFTRDVS 136
Query: 192 ICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCV 251
+ + + ++ +A+ V E G PL + + I + + + F T +D +
Sbjct: 137 VYLRANPNLYRAIESVTEYAG---QPLKQYLDAFIRRVESGEPIDESLKQFKTETNIDSI 193
Query: 252 RNATQALIQSDRYGTSIGDSLRVLVSET 279
++I + + I D
Sbjct: 194 SEWVDSIIFARMAKSDITDVCDHSADRI 221
>gi|314972764|gb|EFT16861.1| type II secretion system F domain protein [Propionibacterium acnes
HL037PA3]
Length = 297
Score = 43.3 bits (101), Expect = 0.048, Method: Composition-based stats.
Identities = 34/227 (14%), Positives = 83/227 (36%), Gaps = 8/227 (3%)
Query: 102 LRAAGFRSEYSLNILLVVRLVVPIIFLILGIIW--IFGYDKLLEYPFQLRVGAVILIGYV 159
+RAA RL+ + IL + I + + +
Sbjct: 75 MRAALRLQGTPPEAFYGRRLMSALAGAILPWLLNAIAIAVGANFPSLLIPAALCVALAGA 134
Query: 160 GFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLS 219
G+ P+ + A +DL+++ + + AL A PL
Sbjct: 135 GWMLPAARLKAATGPTNDDSFEALLVFIDLVVLERLANETSVDALTNAAH---VSDAPLF 191
Query: 220 EEMLLTIAELSFL-PNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSE 278
++ + + + + + ++ + + + + G S+ DS R V+E
Sbjct: 192 IQIRQVLNRAALENVDPWNGLDRLADDIKLPELTDVVS-IARLQEEGASLVDSFRARVAE 250
Query: 279 TRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDT 325
R L+ ++++ ++ +L + ++ ++L+++G A L++I T
Sbjct: 251 LRDAYLLRLQQESTTITQRLGLWTVL-QAGSVMLILLGAAALTLITT 296
>gi|156937800|ref|YP_001435596.1| hypothetical protein Igni_1010 [Ignicoccus hospitalis KIN4/I]
gi|156566784|gb|ABU82189.1| hypothetical protein Igni_1010 [Ignicoccus hospitalis KIN4/I]
Length = 326
Score = 43.3 bits (101), Expect = 0.049, Method: Composition-based stats.
Identities = 31/223 (13%), Positives = 67/223 (30%), Gaps = 13/223 (5%)
Query: 107 FRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSV 166
+ S L L + ++ F + + + F V ++ + + P +
Sbjct: 68 YVSTMVLLPLFIAPIIAAFTFFVTFYVLYLPVPMVFALTFLSFVLGYAILFMLFYMIPIM 127
Query: 167 WISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIG--GQSVPLSEEMLL 224
S+ ++++ L SG + +ALR++ E G L E +
Sbjct: 128 MFSSRA----PQLEKSLVVLYAYLAALGVSGTTYSEALRKLYEKSESLGAEPELGEVVKR 183
Query: 225 TIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERL 284
+ + T N + L GT L +
Sbjct: 184 V---FILGEDIVEVLKEVAEMTPHRDFSNFLRGLANVIESGTG----LENFADVGFETSM 236
Query: 285 MEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
E K + L + ++ ++ I+G + ++ TM
Sbjct: 237 ASMEAKMKEVMGALEIMSEMYVTGAAVMPILGLSFAVVLSTMG 279
>gi|91772318|ref|YP_565010.1| type II secretion system protein [Methanococcoides burtonii DSM
6242]
gi|91711333|gb|ABE51260.1| type II secretion system protein F domain [Methanococcoides
burtonii DSM 6242]
Length = 306
Score = 43.3 bits (101), Expect = 0.050, Method: Composition-based stats.
Identities = 32/224 (14%), Positives = 77/224 (34%), Gaps = 22/224 (9%)
Query: 112 SLNILLVVRLVVPIIFLILGIIWIFGYDKLLE-----YPFQLRVGAVILIGYVGFC---- 162
+L ILL+ V+ +I + + FG+ P + V + + F
Sbjct: 54 TLGILLLFFFVIVLIGVPVIEANRFGFPAWTAAYRPYQPILVAVFGGLFFAALCFVSVYS 113
Query: 163 APSVWISNLVQKRQSSIKRAWPDALDLLLICVESG-ISIDQALRRVAEDIGGQSVPLSEE 221
+ + + R+ I++ P A++ + +G + +D R ++ + + E
Sbjct: 114 LLKSYPAMVAGDRKRKIEQMLPYAINYMSAMSGAGVLPVDL-FRALSNN--EIYGEMCVE 170
Query: 222 MLLTIAELS-FLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVS--- 277
+ +L N A +N + T ++ Q I G + ++
Sbjct: 171 SKYLVRDLEVLGSNLVSAMKNLASSTPSPMLQEFLQGAITVVTSGGELESYFKIKAEQYI 230
Query: 278 -ETRSERLMEAEKKAASLGPKLTV----PMIIFFLPVLILVIIG 316
+ R ++ E +T P+ + ++ ++ G
Sbjct: 231 IDNRQKQKEFLETLGLLGETYVTAFVAGPLFLIITIAIVSLMGG 274
>gi|28493157|ref|NP_787318.1| hypothetical protein TWT190 [Tropheryma whipplei str. Twist]
gi|28476197|gb|AAO44287.1| unknown [Tropheryma whipplei str. Twist]
Length = 294
Score = 43.3 bits (101), Expect = 0.050, Method: Composition-based stats.
Identities = 29/179 (16%), Positives = 65/179 (36%), Gaps = 5/179 (2%)
Query: 111 YSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISN 170
+S I + +R V F+ L +++ + ++ + + + +G P + ++
Sbjct: 47 HSRLIAVGLRNVSLGSFVSLTVLFGVVFAAIITLVTGIYIF-CVFGFLIGIATPILIVNY 105
Query: 171 LVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELS 230
++ S WPD ++ ++ V +G+ + +AL ++ V + + E
Sbjct: 106 QYRRLVSLDSNIWPDIVENVISAVRAGMGLPEALCSLS---RFGPVRIRQIFCNLENEYG 162
Query: 231 FLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTS-IGDSLRVLVSETRSERLMEAE 288
N A N + + + G S + LR L R + AE
Sbjct: 163 ATGNFASAVANAKCALADPKADRILETVQLARSLGGSELIKVLRNLSEYMREDLATRAE 221
>gi|314929715|gb|EFS93546.1| type II secretion system F domain protein [Propionibacterium acnes
HL044PA1]
gi|328906786|gb|EGG26557.1| LOW QUALITY PROTEIN: type II secretion system F domain protein
[Propionibacterium sp. P08]
Length = 297
Score = 43.3 bits (101), Expect = 0.050, Method: Composition-based stats.
Identities = 44/318 (13%), Positives = 111/318 (34%), Gaps = 23/318 (7%)
Query: 9 FDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSA 68
T L++ V++ L+ +L ++ V+ + +Q +
Sbjct: 1 MTTTALSLLAGAVVTVGLLVITAAFRPAPGPDLVAALEVVSGRTSSVDEQIDQTRIGRLG 60
Query: 69 SSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFL 128
S RT L L+ + +L +A + ++P +
Sbjct: 61 RSVTRTFHLSVSPAMRAALRLQGTTPEAFYGRRLMSA------------LAGAILPWLLN 108
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
+ I + LL + + + G+ P+ + A +D
Sbjct: 109 AIAIAVGANFPSLL-----IPAALCVALAGAGWMLPAARLKAATGPTNDDSFEALLVFID 163
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSF-LPNRQVAFENFYNRTQ 247
L+++ + + AL A PL ++ + + + + + +
Sbjct: 164 LVVLERLANETSVDALTNAAH---VSDAPLFIQIRQVLNRAALENVDPWNGLDRLADDIK 220
Query: 248 MDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFL 307
+ + + + + G S+ DS R V+E R L+ ++++ ++ +L + ++
Sbjct: 221 LPELTDVVS-IARLQEEGASLVDSFRARVAELRDAYLLRLQQESTTITQRLGLWTVL-QA 278
Query: 308 PVLILVIIGPAILSIIDT 325
++L+++G A L++I T
Sbjct: 279 GSVMLILLGAAALTLITT 296
>gi|260439393|ref|ZP_05793209.1| conserved hypothetical protein [Butyrivibrio crossotus DSM 2876]
gi|292808189|gb|EFF67394.1| conserved hypothetical protein [Butyrivibrio crossotus DSM 2876]
Length = 261
Score = 43.3 bits (101), Expect = 0.051, Method: Composition-based stats.
Identities = 27/194 (13%), Positives = 75/194 (38%), Gaps = 9/194 (4%)
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVG-FCAPSVWISNLV---QKRQSSIKRAWP 184
IL I WIF ++ L + + + + +W+ N + R+ I ++
Sbjct: 27 ILFIRWIFEAVVIVSLTGYLFYNSAKAVFIISPYIILHIWLRNKAYIVKCREKQIA-SFK 85
Query: 185 DALDLLLICVESGISIDQALRRVA---EDIGGQSVPLSEEMLLTIAELSFLPNRQVAFEN 241
D + + + +G SI+ + + E + G+ + + + + AF
Sbjct: 86 DGIRFVNNSMHAGYSIENSFKEALIQMEQVYGKDDDTYKGFKKIVGRIMLNIPIEQAFYQ 145
Query: 242 FYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVP 301
+ + + + + + L + R G ++ + + + ++ ++ + + K
Sbjct: 146 YAVESGTEEILDFAEILKFAKRSGGNMSHIINNTANIITEKISLK-QEISTVIAGKKFEQ 204
Query: 302 MIIFFLPVLILVII 315
MI+ +P I++ +
Sbjct: 205 MILSAVPAGIILYM 218
>gi|150402959|ref|YP_001330253.1| type II secretion system protein [Methanococcus maripaludis C7]
gi|150033989|gb|ABR66102.1| type II secretion system protein [Methanococcus maripaludis C7]
Length = 298
Score = 43.3 bits (101), Expect = 0.051, Method: Composition-based stats.
Identities = 32/204 (15%), Positives = 85/204 (41%), Gaps = 15/204 (7%)
Query: 114 NILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQ 173
+ + + LV+ I+ + L I F L F + +G+V+ + + + +
Sbjct: 32 RVFIGILLVITILPIFLKIFLGFTLKTTLILTF-VYLGSVLSLPTIMY-----------E 79
Query: 174 KRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLP 233
+ + P AL ++++ ++SG S+ +A+ V + + ++++ + E
Sbjct: 80 SKMDKFDQNIPKALYVMVLSLDSGRSVVEAINEVIRSGIPEVDVVFSKVVVLMTERKL-- 137
Query: 234 NRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAAS 293
+ + A N R + +I++ +YG + D+L+ L + ++++ + +
Sbjct: 138 SFEDAMILVSNSLDSKIFRQVGRLIIENRKYGGELADTLKKLAKTLEDLQNLKSQLLSVT 197
Query: 294 LGPKLTVPMIIF-FLPVLILVIIG 316
+I+ +P +I G
Sbjct: 198 ANGLAVGLIILCGVIPATAGLIGG 221
>gi|313107717|ref|ZP_07793899.1| putative type II secretion system protein [Pseudomonas aeruginosa
39016]
gi|310880401|gb|EFQ38995.1| putative type II secretion system protein [Pseudomonas aeruginosa
39016]
Length = 395
Score = 43.3 bits (101), Expect = 0.052, Method: Composition-based stats.
Identities = 23/147 (15%), Positives = 53/147 (36%), Gaps = 7/147 (4%)
Query: 169 SNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAE 228
+ R+ A+ L + +G+S+ A+ A++ G + L +
Sbjct: 45 RRNLGSRRRLKAEELNMAIHELATMLAAGVSMADAVE--AQERGARHPKLISALQAMANG 102
Query: 229 LSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAE 288
L + V E+ + L+ + ++ +LR ++ ER AE
Sbjct: 103 LRQGQSFPVVLESAGL-----DLPRYVYQLVAAGEMTGNLAGALRDCATQMEYERRTRAE 157
Query: 289 KKAASLGPKLTVPMIIFFLPVLILVII 315
+ A + P + V + + L + ++
Sbjct: 158 LQGALIYPAILVLSGVLAVATLFVFVV 184
>gi|189016766|ref|YP_001711805.1| hypothetical protein CMS_pCSL0076 [Clavibacter michiganensis subsp.
sepedonicus]
gi|167728937|emb|CAQ03319.1| putative membrane protein [Clavibacter michiganensis subsp.
sepedonicus]
Length = 293
Score = 43.3 bits (101), Expect = 0.052, Method: Composition-based stats.
Identities = 27/203 (13%), Positives = 69/203 (33%), Gaps = 11/203 (5%)
Query: 110 EYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWIS 169
E ++ +L + I I + + L + F L + + V + +P +
Sbjct: 82 EIPVSTFYARKLQLAAIGFIGPLFLPIVFQLALGFFFPLPLLLSPALALVMWLSPDATVR 141
Query: 170 NLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAEL 229
++ + R L+L+ + + + D AL + A + E
Sbjct: 142 TKARQARREFTRFVTVYLELVAVTLLGTTTPDSALSKAASLSDTWA------FRRIRREY 195
Query: 230 SFL----PNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLM 285
++ A + + ++ + + + + + + D LR + R++
Sbjct: 196 QIADLTRVSKWDALDRLGEQLEVPALTDMARMMRLGEAR-VGLRDQLRAACDKLRAKVAA 254
Query: 286 EAEKKAASLGPKLTVPMIIFFLP 308
+ AA +T P++ +P
Sbjct: 255 DDLDAAARATSAMTYPVLATLIP 277
>gi|15597872|ref|NP_251366.1| type II secretion system protein [Pseudomonas aeruginosa PAO1]
gi|296388862|ref|ZP_06878337.1| type II secretion system protein [Pseudomonas aeruginosa PAb1]
gi|9948747|gb|AAG06064.1|AE004695_17 probable type II secretion system protein [Pseudomonas aeruginosa
PAO1]
Length = 395
Score = 43.3 bits (101), Expect = 0.052, Method: Composition-based stats.
Identities = 23/147 (15%), Positives = 53/147 (36%), Gaps = 7/147 (4%)
Query: 169 SNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAE 228
+ R+ A+ L + +G+S+ A+ A++ G + L +
Sbjct: 45 RRNLGSRRRLKAEELNMAIHELATMLAAGVSMADAVE--AQERGARHPKLISALQAMANG 102
Query: 229 LSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAE 288
L + V E+ + L+ + ++ +LR ++ ER AE
Sbjct: 103 LRQGQSFPVVLESAGL-----DLPRYVYQLVAAGEMTGNLAGALRDCATQMEYERRTRAE 157
Query: 289 KKAASLGPKLTVPMIIFFLPVLILVII 315
+ A + P + V + + L + ++
Sbjct: 158 LQGALIYPAILVLSGVLAVATLFVFVV 184
>gi|294055120|ref|YP_003548778.1| Type II secretion system F domain protein [Coraliomargarita
akajimensis DSM 45221]
gi|293614453|gb|ADE54608.1| Type II secretion system F domain protein [Coraliomargarita
akajimensis DSM 45221]
Length = 383
Score = 43.3 bits (101), Expect = 0.054, Method: Composition-based stats.
Identities = 24/162 (14%), Positives = 55/162 (33%), Gaps = 16/162 (9%)
Query: 171 LVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELS 230
KR+ L +E+G+ + AL A++ ++ S + E+S
Sbjct: 34 KQAKRKKIKLAQLTVFTQQLAAMLEAGLPLVSALE--AQEEQTENPVFSIIVRNVRNEVS 91
Query: 231 FLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKK 290
+ A ++ N N +++++ ++ + L + + K
Sbjct: 92 AGRSFSDACSDYPNAFP-----NLFISMVEAGEASGNLAEILDKTSVYFEDMVKLVRQVK 146
Query: 291 AASLGPKLTVPMIIF----FLPVLILVIIGPAILSIIDTMKD 328
A LT P+ + L ++LV + P + +
Sbjct: 147 GA-----LTYPVAVIGLAVILVNVLLVAVIPVFAEMFTSFGQ 183
>gi|317046911|ref|YP_004114559.1| type II secretion system F domain-containing protein [Pantoea sp.
At-9b]
gi|316948528|gb|ADU68003.1| Type II secretion system F domain protein [Pantoea sp. At-9b]
Length = 399
Score = 43.3 bits (101), Expect = 0.056, Method: Composition-based stats.
Identities = 26/138 (18%), Positives = 50/138 (36%), Gaps = 9/138 (6%)
Query: 182 AWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFEN 241
D+L + +G+++ Q+L+ V ++ S+ E + +S A
Sbjct: 264 QLTQIFDILQLTQRAGLTLLQSLQAV--EVTLTSLLWREAISQLQQHISAGAPLHQALH- 320
Query: 242 FYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVP 301
Q LI+ ++ L L R L AE AA+L P + +
Sbjct: 321 -----QHQLFTPLCAQLIKVGEEVGALDVMLSRLAEWHRENTLGRAESLAAALEP-MMMV 374
Query: 302 MIIFFLPVLILVIIGPAI 319
+I + L++ + P
Sbjct: 375 VIGGIVGTLVIAMYLPVF 392
>gi|320161808|ref|YP_004175033.1| hypothetical protein ANT_24070 [Anaerolinea thermophila UNI-1]
gi|319995662|dbj|BAJ64433.1| hypothetical protein ANT_24070 [Anaerolinea thermophila UNI-1]
Length = 288
Score = 42.9 bits (100), Expect = 0.058, Method: Composition-based stats.
Identities = 49/321 (15%), Positives = 104/321 (32%), Gaps = 47/321 (14%)
Query: 15 AVAITTAVSIFSLIYAVVIPS-LGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLR 73
A I +S+ L++ V +G G K + ER + +Q T + +
Sbjct: 3 AAQILIPLSLALLVWGVAQNVKVGGGRAAKALSEYYAERTEKKTKQETIGEAVAG----- 57
Query: 74 TRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGII 133
+L + + LR A R + L + ++F G++
Sbjct: 58 -----------------KLLSVKTWEDHLRWA-QRGGQYVGQSLGGVVFQSLLFAGAGLL 99
Query: 134 WIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLIC 193
+ L +L+ + F P V + + + + R P+ L+
Sbjct: 100 VVMVNPAPLS----------LLVPVMAFAYPLVRLRSKANTVRKRVFRTLPETAALIAAE 149
Query: 194 VESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQV--------AFENFYNR 245
+ +G + D A+ R A PLS +L E+S R +
Sbjct: 150 LAAGTAPDVAVARAA----AIPGPLS-TLLREAVEMSRGTGRPLFSRKPISGTLVEAMGA 204
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
+ + + L G + + + E + + + L +L + + +F
Sbjct: 205 SGIPALHAFGSQLDLVASKGVAGAALMSEIARALGQEYRAKLQSEVEKLDSRLVLVVALF 264
Query: 306 FLPVLILVIIGPAILSIIDTM 326
F + +++ A+ I+
Sbjct: 265 FFVPFVALLLFAALNPILTVF 285
>gi|152966970|ref|YP_001362754.1| type II secretion system protein [Kineococcus radiotolerans
SRS30216]
gi|151361487|gb|ABS04490.1| type II secretion system protein [Kineococcus radiotolerans
SRS30216]
Length = 417
Score = 42.9 bits (100), Expect = 0.058, Method: Composition-based stats.
Identities = 28/154 (18%), Positives = 59/154 (38%), Gaps = 16/154 (10%)
Query: 180 KRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAF 239
+ V SG+S+ +AL +AE +S L+ + AE+ +
Sbjct: 77 LKDLALMSRQFATMVSSGLSLIRALSILAE--QAESKKLAATLGEVRAEVETGASLSTTL 134
Query: 240 ENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLT 299
++R +I++ G + L + SE ++A+ K+A +T
Sbjct: 135 AK-HDRIFPP----LMINMIRAGEVGGFLDQVLVQIADNFESEVKLKAKVKSA-----MT 184
Query: 300 VPMIIFFLPVL----ILVIIGPAILSIIDTMKDH 329
P+++F + +L +L+ I P + +
Sbjct: 185 YPVVVFIIAILAVVGMLLFIVPVFTQMFSDLGGK 218
>gi|317508888|ref|ZP_07966527.1| alanine rich membrane protein [Segniliparus rugosus ATCC BAA-974]
gi|316252849|gb|EFV12280.1| alanine rich membrane protein [Segniliparus rugosus ATCC BAA-974]
Length = 97
Score = 42.9 bits (100), Expect = 0.058, Method: Composition-based stats.
Identities = 20/82 (24%), Positives = 36/82 (43%)
Query: 241 NFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV 300
+ ++ + +S R GT++ D L L + R+E L A A G L
Sbjct: 8 AWAEAEELPATAALARMAKRSARSGTALADGLVELATTERAEALDRATAGAGRAGVLLAG 67
Query: 301 PMIIFFLPVLILVIIGPAILSI 322
P+ + FLP + + + P I+ +
Sbjct: 68 PLGLCFLPAFLCLGVIPVIIGL 89
>gi|116050662|ref|YP_790518.1| putative type II secretion system protein [Pseudomonas aeruginosa
UCBPP-PA14]
gi|115585883|gb|ABJ11898.1| putative type II secretion system protein [Pseudomonas aeruginosa
UCBPP-PA14]
Length = 395
Score = 42.9 bits (100), Expect = 0.058, Method: Composition-based stats.
Identities = 23/147 (15%), Positives = 53/147 (36%), Gaps = 7/147 (4%)
Query: 169 SNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAE 228
+ R+ A+ L + +G+S+ A+ A++ G + L +
Sbjct: 45 RRNLGSRRRLKAEELNMAIHELATMLAAGVSMADAVE--AQERGARHPKLISALQAMANG 102
Query: 229 LSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAE 288
L + V E+ + L+ + ++ +LR ++ ER AE
Sbjct: 103 LRQGQSFPVVLESAGL-----DLPRYVYQLVAAGEMTGNLAGALRDCATQMEYERRTRAE 157
Query: 289 KKAASLGPKLTVPMIIFFLPVLILVII 315
+ A + P + V + + L + ++
Sbjct: 158 LQGALIYPAILVLSGVLAVATLFVFVV 184
>gi|257459470|ref|ZP_05624579.1| type II secretion system protein [Campylobacter gracilis RM3268]
gi|257442895|gb|EEV18029.1| type II secretion system protein [Campylobacter gracilis RM3268]
Length = 414
Score = 42.9 bits (100), Expect = 0.059, Method: Composition-based stats.
Identities = 21/142 (14%), Positives = 53/142 (37%), Gaps = 10/142 (7%)
Query: 187 LDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRT 246
+ L + +GISI +++ VA + L E +L+ + + E F +
Sbjct: 79 IRQLSVMTNAGISIHDSIKEVAR--AAEDKTLKEIFSAMNDDLNAGLSLTESTEKFRGQL 136
Query: 247 QMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSE-RLMEAEKKAASLGPKLTVPMIIF 305
+ A++ ++ +SL L + + KKA + + +++
Sbjct: 137 G-----DVVVAMVSLGEATGNMAESLAKLAAMLQELWENQRKFKKAMRYP--MILMIVMA 189
Query: 306 FLPVLILVIIGPAILSIIDTMK 327
++++ + P I + +
Sbjct: 190 IAFSVLMMYVVPKFREIFEDLG 211
>gi|146303434|ref|YP_001190750.1| type II secretion system protein [Metallosphaera sedula DSM 5348]
gi|145701684|gb|ABP94826.1| type II secretion system protein [Metallosphaera sedula DSM 5348]
Length = 615
Score = 42.9 bits (100), Expect = 0.060, Method: Composition-based stats.
Identities = 49/281 (17%), Positives = 106/281 (37%), Gaps = 23/281 (8%)
Query: 59 QITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNI--- 115
+ L++++ + + + NF + +K+I +I KL AG ++ L
Sbjct: 3 ALKGLRRNAGNKKEAKPSIGIMGNFYELGIVKSIA--RSIEKKLLLAGLSTDPQLFAAQM 60
Query: 116 --LLVVRLVVPIIFLILGI-----IWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWI 168
L+V V I LG+ +++ + + +I V + +V I
Sbjct: 61 FFYLMVSSVFSAILAFLGVYVLVKLYLVFRVAKFAVAGLMFIIFAAIIPPVTYLLLNVNI 120
Query: 169 SNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAE 228
S ++ R+ I + I + SG+S R++ I +++ +L
Sbjct: 121 SQNIENRRIGIDAETAAFSAVFTIFLRSGLSPRILFDRISRTIAFNY--INQVLLYVSKR 178
Query: 229 LSF-LPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEA 287
++F N + A + + + + + + + R G + D++ + + + A
Sbjct: 179 INFLGENVEDALLHAIRISPSKILNDFFVSYVAAVRSGAPVLDAVSAKAKDILKQLELGA 238
Query: 288 EKKAASLG-------PKLTVPMIIFFLPVLILVIIGPAILS 321
A L L I FFL +L+L + P+I+
Sbjct: 239 ALAADRLSGVGETYVIWLASGYITFFL-ILLLQALFPSIVG 278
>gi|320094936|ref|ZP_08026662.1| hypothetical protein HMPREF9005_1274 [Actinomyces sp. oral taxon
178 str. F0338]
gi|319978135|gb|EFW09752.1| hypothetical protein HMPREF9005_1274 [Actinomyces sp. oral taxon
178 str. F0338]
Length = 165
Score = 42.9 bits (100), Expect = 0.060, Method: Composition-based stats.
Identities = 37/156 (23%), Positives = 67/156 (42%), Gaps = 13/156 (8%)
Query: 168 ISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIA 227
+ ++ R ++ A A DL+L + G SI QAL + +G S+ ++
Sbjct: 16 LLARLRSRDGAVDEAI--ACDLVLAGLRCGASIPQALAALGGAVG------SDGLVRISR 67
Query: 228 ELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEA 287
EL A++ T++ + L + G S LR ++TR R+ +A
Sbjct: 68 ELRLGAGWAAAWDPAPPGTEL-----LREGLEAAWLQGVSPEAQLRRAAAQTRRHRISDA 122
Query: 288 EKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSII 323
+K A LG L P+ LP +L+ + P ++ +
Sbjct: 123 KKAAEELGISLVAPLGALLLPAFVLLGLVPIVIHMF 158
>gi|256786941|ref|ZP_05525372.1| integral membrane protein [Streptomyces lividans TK24]
Length = 267
Score = 42.9 bits (100), Expect = 0.060, Method: Composition-based stats.
Identities = 17/104 (16%), Positives = 39/104 (37%), Gaps = 3/104 (2%)
Query: 217 PLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLV 276
P+ + + AE+ A+ + + L +++ G + L
Sbjct: 153 PVGDALGRGAAEVRLGGEPAGAWRGLAA---VPGAVPLARLLERAEVSGLPAAGPVARLA 209
Query: 277 SETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAIL 320
++ R++ +A +T P+ + FLP I V + P ++
Sbjct: 210 AQARADWARTTTVRARRAAVMVTAPVGLCFLPAFIAVGVLPVVI 253
>gi|212224327|ref|YP_002307563.1| flagellar assembly protein J [Thermococcus onnurineus NA1]
gi|212009284|gb|ACJ16666.1| archaeal flagella-related membrane protein J [Thermococcus
onnurineus NA1]
Length = 576
Score = 42.9 bits (100), Expect = 0.060, Method: Composition-based stats.
Identities = 23/154 (14%), Positives = 50/154 (32%), Gaps = 3/154 (1%)
Query: 120 RLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSI 179
++++P + + I G Y + LI V + + + ++ SI
Sbjct: 22 KVLLPYMAISAAIFLAVGVITTFLYMPTALKVLMFLIPVVLLVYAAAYPYIVADSKRISI 81
Query: 180 KRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFL-PNRQVA 238
P + + S + + ++ D +++E+ ++ L + A
Sbjct: 82 NSKMPYFITYFAVLSTSEMGRADLIAVLSHDPK--LGAIADELKKVHTIVNRLHLSMPEA 139
Query: 239 FENFYNRTQMDCVRNATQALIQSDRYGTSIGDSL 272
F RT + L S G + D L
Sbjct: 140 FRFLARRTPSTMFADFLDRLAYSLDSGVDLKDYL 173
>gi|162660585|gb|EDQ48445.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 469
Score = 42.9 bits (100), Expect = 0.065, Method: Composition-based stats.
Identities = 21/185 (11%), Positives = 55/185 (29%), Gaps = 25/185 (13%)
Query: 12 TELAVAITTAVSIFSLIY---AVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSA 68
+ + ++ L+ A+V S ++ + R+ + + A
Sbjct: 3 PQQLWIASISLGALGLVLWACALVWKLWRSARASSQVARILQARDTASTPKAATKSAMQA 62
Query: 69 SS---------RLRTRDSKSLRNFVKKL------NLKAILVDENIVNKLRAAGFRSEYSL 113
+ +R+ DS + L+ + L AG +
Sbjct: 63 NDAQLLNPLSINVRSSDSPQAAAANLPPPAWLQWGVAKALLADEDRKLLDQAGVGTRNGS 122
Query: 114 NILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQ 173
+ R+V+ ++ +L + +L + L +G P ++ + +
Sbjct: 123 MAYVASRMVLCVVLPLLAL-------GVLRPGENAALIYGFLGVSLGLMLPKWFLRSRAK 175
Query: 174 KRQSS 178
R+
Sbjct: 176 GRREQ 180
>gi|170782447|ref|YP_001710780.1| putative type II secretion protein protein [Clavibacter
michiganensis subsp. sepedonicus]
gi|169157016|emb|CAQ02189.1| putative type II secretion protein protein [Clavibacter
michiganensis subsp. sepedonicus]
Length = 274
Score = 42.9 bits (100), Expect = 0.065, Method: Composition-based stats.
Identities = 34/203 (16%), Positives = 70/203 (34%), Gaps = 17/203 (8%)
Query: 90 KAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLR 149
++ + ++ ++L AG + S++ L V +V + +L + L
Sbjct: 18 RSRGLTASVHDRLTHAGL-ARVSVSSFLAVSALVGLAAGVLVEALLRVDGAALAAAATGL 76
Query: 150 VGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAE 209
+ P + R+ + + WPD +D L+ V +G+ + A+ +A
Sbjct: 77 L------------LPWAVVGARSASRRRAHREVWPDVVDHLVSAVRAGMGLPDAVASLAV 124
Query: 210 DIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTS-I 268
P E + VA + + + L + G + +
Sbjct: 125 AGPVVLRPAFREFASVH---RTTGSFAVALDELKEQLADPTADRILETLRMAREVGGTQL 181
Query: 269 GDSLRVLVSETRSERLMEAEKKA 291
D LR L R E + +E +A
Sbjct: 182 PDVLRGLARFLRDEAAIRSEAEA 204
>gi|331694287|ref|YP_004330526.1| Type II secretion system F domain-containing protein
[Pseudonocardia dioxanivorans CB1190]
gi|326948976|gb|AEA22673.1| Type II secretion system F domain protein [Pseudonocardia
dioxanivorans CB1190]
Length = 243
Score = 42.9 bits (100), Expect = 0.067, Method: Composition-based stats.
Identities = 28/135 (20%), Positives = 55/135 (40%), Gaps = 6/135 (4%)
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQ 247
+LL +C+E+G+ + A+ A + G S + L + A++ R
Sbjct: 107 ELLAVCLEAGMPVSTAVEAGAAQLDGPS---GRALRRVAGLLELGADPAEAWQAVDGR-- 161
Query: 248 MDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFL 307
+ +A +S G I R R+E + A +A +T P+ + FL
Sbjct: 162 -PALVAFARAARRSAATGAGIAHVARTEAQRLRAETVDSARARAQRAAVTITGPLGLCFL 220
Query: 308 PVLILVIIGPAILSI 322
P +++ I P ++ +
Sbjct: 221 PAFLVLGIAPVVVGL 235
>gi|53804536|ref|YP_113585.1| general secretion pathway protein F [Methylococcus capsulatus str.
Bath]
gi|53758297|gb|AAU92588.1| general secretion pathway protein F [Methylococcus capsulatus str.
Bath]
Length = 364
Score = 42.9 bits (100), Expect = 0.067, Method: Composition-based stats.
Identities = 34/166 (20%), Positives = 66/166 (39%), Gaps = 16/166 (9%)
Query: 164 PSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEML 223
P W+S L ++R ++ LL +++G+ +D+AL V ED+ + V L+ +
Sbjct: 8 PFAWLS-LSRRRNRISQKQIGIFTRELLTLLQAGLPLDRAL-FVLEDLTREDVALNGMIG 65
Query: 224 LTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSER 283
I + A E Q LI++ G ++ D L L
Sbjct: 66 RVIELVKGGSQLSAALER-----QEGVFSRFYLNLIRAGEAGGALEDVLERLSD-----Y 115
Query: 284 LMEAEKKAASLGPKLTVPMIIFFLPV----LILVIIGPAILSIIDT 325
L +++ ++ + P I+ + V L+L + P + +T
Sbjct: 116 LERSKELRDTVSTAMIYPAILLTMSVGSLLLLLTFVVPQFEEMFET 161
>gi|297560195|ref|YP_003679169.1| type II secretion system F domain protein [Nocardiopsis
dassonvillei subsp. dassonvillei DSM 43111]
gi|296844643|gb|ADH66663.1| Type II secretion system F domain protein [Nocardiopsis
dassonvillei subsp. dassonvillei DSM 43111]
Length = 297
Score = 42.9 bits (100), Expect = 0.067, Method: Composition-based stats.
Identities = 34/202 (16%), Positives = 61/202 (30%), Gaps = 10/202 (4%)
Query: 133 IWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLI 192
+ LL + A +L + P+V + ++Q + A ++L
Sbjct: 57 LVAAVVGGLLVWFVTGWPVAGVLAAAGCWWGPAVLGPDRGHEKQVAGVEAVAAWTEMLRD 116
Query: 193 CVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVR 252
+ + QA VA + P+ E + L Q A F +
Sbjct: 117 LMAGAAGLHQA---VAATVPIAPEPVREPVARLAERLRAGQPTQGALRAFADEVDNPTAD 173
Query: 253 NATQALIQ-SDRYGTSIGDSLRVLVSETRSERLMEAEKKAASL----GPKLTVPMIIFFL 307
AL + R+ T +G L L R + M A+ ++ V +
Sbjct: 174 LVAAALSTAATRHATDLGTLLGSLAEAAREQAAMLVRVAASRARLRTSTRIIVGTTVGM- 232
Query: 308 PVLILVIIGPAILSIIDTMKDH 329
+L+ P L D
Sbjct: 233 -AALLMAFNPGYLEPFDGFLGQ 253
>gi|239934068|ref|ZP_04691021.1| integral membrane protein [Streptomyces ghanaensis ATCC 14672]
Length = 319
Score = 42.9 bits (100), Expect = 0.069, Method: Composition-based stats.
Identities = 30/154 (19%), Positives = 51/154 (33%), Gaps = 4/154 (2%)
Query: 154 ILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGG 213
+L+G P + V + A + L + G+ ++QA+ G
Sbjct: 81 VLLGAAVIGVPWLITPAQVAAGRIGQLEALSEWTQRLAGLLRLGMGLEQAMI---TSRKG 137
Query: 214 QSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDR-YGTSIGDSL 272
L+E++ L + A F + T ALI S G + +L
Sbjct: 138 APDALAEQITGLSDRLRLGWRPEEALRAFADELDDVTADKVTAALILSVNDRGPGLAQAL 197
Query: 273 RVLVSETRSERLMEAEKKAASLGPKLTVPMIIFF 306
L R E + +A P+ TV + F
Sbjct: 198 EDLAGTVREEVAKKRGIEADRAKPRTTVRWMTFI 231
>gi|297201342|ref|ZP_06918739.1| predicted protein [Streptomyces sviceus ATCC 29083]
gi|197712795|gb|EDY56829.1| predicted protein [Streptomyces sviceus ATCC 29083]
Length = 321
Score = 42.9 bits (100), Expect = 0.070, Method: Composition-based stats.
Identities = 25/118 (21%), Positives = 47/118 (39%), Gaps = 6/118 (5%)
Query: 203 ALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSD 262
A + V E +GG P+ E + AE+ A+ + + L ++D
Sbjct: 198 AAQAVGEALGG---PVGEGLARGAAEVRLGGEPDEAWRRLAS---TPGAGALARLLERAD 251
Query: 263 RYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAIL 320
G + L ++ R++ A +A +T P+ + FLP I V + P ++
Sbjct: 252 VTGLPAAGPVGGLAADARADWGRAATARARKAAVLVTAPVGLCFLPAFIAVGVLPIVI 309
>gi|332671125|ref|YP_004454133.1| Type II secretion system F domain-containing protein [Cellulomonas
fimi ATCC 484]
gi|332340163|gb|AEE46746.1| Type II secretion system F domain protein [Cellulomonas fimi ATCC
484]
Length = 286
Score = 42.9 bits (100), Expect = 0.070, Method: Composition-based stats.
Identities = 38/198 (19%), Positives = 73/198 (36%), Gaps = 17/198 (8%)
Query: 95 DENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVI 154
+ L AG V P +++ L ++ A+
Sbjct: 35 QARTQDHLVQAGMGG------------VTPAGLVLVSGGVGVLGLVLGLAVTRVPSMALC 82
Query: 155 LIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQ 214
L +V APS + + ++R++ ++R WP+ +D L + +G+++ +AL ++ E
Sbjct: 83 LGAFVA-MAPSALVRSRARRRRARLRRLWPEVVDHLASGIRAGLALPEALAQIGER---G 138
Query: 215 SVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQS-DRYGTSIGDSLR 273
V L E + + + R +AL + D GT +G LR
Sbjct: 139 PVELREPFVAFAEDYRATGRFGECLDLLKARLADPVADRIVEALRMTRDVGGTDLGRLLR 198
Query: 274 VLVSETRSERLMEAEKKA 291
L + R + E +A
Sbjct: 199 TLSTFLREDLRTRGELEA 216
>gi|227831596|ref|YP_002833376.1| type II secretion system protein [Sulfolobus islandicus L.S.2.15]
gi|284999148|ref|YP_003420916.1| type II secretion system protein [Sulfolobus islandicus L.D.8.5]
gi|227458044|gb|ACP36731.1| type II secretion system protein [Sulfolobus islandicus L.S.2.15]
gi|284447044|gb|ADB88546.1| type II secretion system protein [Sulfolobus islandicus L.D.8.5]
Length = 658
Score = 42.9 bits (100), Expect = 0.072, Method: Composition-based stats.
Identities = 32/191 (16%), Positives = 67/191 (35%), Gaps = 3/191 (1%)
Query: 127 FLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDA 186
FLI ++ I L ++L ++ P + ++ + SI+ P
Sbjct: 151 FLISLLLVIPISLALSIILLSPLPFLLLLFPFIFIFYPEQKYKSRAREVRDSIQDEIPFF 210
Query: 187 LDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELS-FLPNRQVAFENFYNR 245
+ L+ I SG +I + +R++ + + +E LL I ++ F + A E+
Sbjct: 211 VTLITIINASGTTIYEGMRKIVQ--FPLFKAMKKEALLIIRDIDFFGKSPLDALEHRARL 268
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
T R G I L E + + + +I+F
Sbjct: 269 TFNRDYSWFLAGYTSIIRSGGDIEAYLFQKAREFLNWLQFRWRFYSERTSFLGELIVILF 328
Query: 306 FLPVLILVIIG 316
+ + L+++
Sbjct: 329 LIFPMFLIVLA 339
>gi|295837423|ref|ZP_06824356.1| translation initiation factor IF-2 [Streptomyces sp. SPB74]
gi|197696060|gb|EDY42993.1| translation initiation factor IF-2 [Streptomyces sp. SPB74]
Length = 304
Score = 42.9 bits (100), Expect = 0.072, Method: Composition-based stats.
Identities = 37/169 (21%), Positives = 63/169 (37%), Gaps = 8/169 (4%)
Query: 160 GFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLS 219
G P W+ +RQ P A DLL CV +G +A V G P+
Sbjct: 143 GGNLPPTWLRR--PRRQDGTPADLPLAADLLAACVAAGAGPVEAAEAVG---GSLDGPVG 197
Query: 220 EEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSET 279
E + AE+ + A+ F + + L ++ G I L ++
Sbjct: 198 ERLRHVAAEIRLGGEPERAWALFGS---LPGAGGLAGLLQRATLSGAPIAAPALALAADC 254
Query: 280 RSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMKD 328
R+ A A G +T P+ + FLP +++ + P +L + +
Sbjct: 255 RARWARGATAAARRAGVLVTAPLGLCFLPAFLILGVAPVLLGLAGQLTH 303
>gi|296394989|ref|YP_003659873.1| type II secretion system F domain-containing protein [Segniliparus
rotundus DSM 44985]
gi|296182136|gb|ADG99042.1| Type II secretion system F domain protein [Segniliparus rotundus
DSM 44985]
Length = 192
Score = 42.9 bits (100), Expect = 0.073, Method: Composition-based stats.
Identities = 34/152 (22%), Positives = 68/152 (44%), Gaps = 7/152 (4%)
Query: 172 VQKRQSSIKR-AWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELS 230
+R + + + + DLL + + +G+ A+R VA+ PL+ + + L+
Sbjct: 38 ASRRTARLDQLGLAASYDLLAVSLRAGLPTSVAMRAVAQ---SAPEPLAGALAKAASLLA 94
Query: 231 FLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKK 290
+ A+E ++ + I+S R GT++ + L L S R+E L +A +
Sbjct: 95 LGAGPRTAWEEAAA---LEVTAPLARMAIRSARSGTALAEGLGELASGARAEALDQAAAE 151
Query: 291 AASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
A+ L P+ + FLP + + P I+ +
Sbjct: 152 ASRAAVLLAGPLGLCFLPAFFCLGVMPVIVGL 183
>gi|229580548|ref|YP_002838948.1| type II secretion system protein [Sulfolobus islandicus Y.G.57.14]
gi|229583406|ref|YP_002841805.1| type II secretion system protein [Sulfolobus islandicus Y.N.15.51]
gi|228011264|gb|ACP47026.1| type II secretion system protein [Sulfolobus islandicus Y.G.57.14]
gi|228014122|gb|ACP49883.1| type II secretion system protein [Sulfolobus islandicus Y.N.15.51]
Length = 658
Score = 42.9 bits (100), Expect = 0.073, Method: Composition-based stats.
Identities = 32/191 (16%), Positives = 67/191 (35%), Gaps = 3/191 (1%)
Query: 127 FLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDA 186
FLI ++ I L ++L ++ P + ++ + SI+ P
Sbjct: 151 FLISLLLVIPISLALSIILLSPLPFLLLLFPFIFIFYPEQKYKSRAREVRDSIQDEIPFF 210
Query: 187 LDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELS-FLPNRQVAFENFYNR 245
+ L+ I SG +I + +R++ + + +E LL I ++ F + A E+
Sbjct: 211 VTLITIINASGTTIYEGMRKIVQ--FPLFKAMKKEALLIIRDIDFFGKSPLDALEHRARL 268
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
T R G I L E + + + +I+F
Sbjct: 269 TFNRDYSWFLAGYTSIIRSGGDIEAYLFQKAREFLNWLQFRWRFYSERTSFLGELIVILF 328
Query: 306 FLPVLILVIIG 316
+ + L+++
Sbjct: 329 LIFPMFLIVLA 339
>gi|269958189|ref|YP_003327977.1| type II secretion system protein [Xylanimonas cellulosilytica DSM
15894]
gi|269306870|gb|ACZ32419.1| type II secretion system protein [Xylanimonas cellulosilytica DSM
15894]
Length = 291
Score = 42.6 bits (99), Expect = 0.076, Method: Composition-based stats.
Identities = 30/197 (15%), Positives = 70/197 (35%), Gaps = 18/197 (9%)
Query: 122 VVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKR 181
++ ++ L+ G++ V A+++ P++ + +R ++
Sbjct: 55 ILALVGLVAGVVIYLIAG---------WVIAIVVGPIAAAGLPALLSAPGSAERIDKLE- 104
Query: 182 AWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFEN 241
A + L + G+ +++ALR + + E+ +A L + + A
Sbjct: 105 ALEEWTRGLAGVLTVGVGLEEALR---ATLRSTPDAIRPEVTTLVARLRARMSTEDALRA 161
Query: 242 FYNRTQMDCVRNATQALIQ-SDRYGTSIGDSLRVLVS----ETRSERLMEAEKKAASLGP 296
F + LI + R G + L L + R+ R +EA++
Sbjct: 162 FADDLDDATGDLVASFLISGARRRGQGLASVLNSLAESVAADVRARRAIEADRAKPRATA 221
Query: 297 KLTVPMIIFFLPVLILV 313
+ + + L VL +
Sbjct: 222 RWVTIITLGVLGVLFIF 238
>gi|218672463|ref|ZP_03522132.1| probable pilus assembly protein [Rhizobium etli GR56]
Length = 168
Score = 42.6 bits (99), Expect = 0.078, Method: Composition-based stats.
Identities = 22/147 (14%), Positives = 57/147 (38%), Gaps = 18/147 (12%)
Query: 46 KSVAVEREILRKQQITSLQKDSASSRLRT--RDSKSLRNFVKKLNLKAILVDENI---VN 100
K A ++ ++ ++ +A R++ + KS+++ +K L + +
Sbjct: 35 KKSASRINRVKSAEVDRVKVKAARDRVQELSKRRKSVQDNLKDLEKRQHEKTRKTLSMKS 94
Query: 101 KLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVG 160
+L AG S+ ++ + + L + + + + +G ++ G
Sbjct: 95 RLLQAGL--PISVGKFYLISAIFASVLLFGAFV--------VGASWMVMIGIAVVA---G 141
Query: 161 FCAPSVWISNLVQKRQSSIKRAWPDAL 187
P + L+++RQ+ P+AL
Sbjct: 142 LGLPRWVLGFLIKRRQNKFLNELPNAL 168
>gi|169831132|ref|YP_001717114.1| type II secretion system protein [Candidatus Desulforudis
audaxviator MP104C]
gi|169637976|gb|ACA59482.1| type II secretion system protein [Candidatus Desulforudis
audaxviator MP104C]
Length = 417
Score = 42.6 bits (99), Expect = 0.080, Method: Composition-based stats.
Identities = 21/152 (13%), Positives = 56/152 (36%), Gaps = 16/152 (10%)
Query: 180 KRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAF 239
R L V++G+ + L + + +++ L+ + E A
Sbjct: 77 ARDLAVFCRQLATMVQAGMPLLTCLNVLGQQSDNKTLRLTAASVAMAVE--AGNTLSEAL 134
Query: 240 ENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLT 299
F ++++ G ++ + L L ++ + + A+ K+A ++
Sbjct: 135 RAFPKIFP-----ELFVTMVEAGETGGALEEVLERLATQLEKDADIRAKVKSA-----MS 184
Query: 300 VPMIIFFL----PVLILVIIGPAILSIIDTMK 327
P++I + +IL+ + P ++ +M
Sbjct: 185 YPLVILAVALAAISIILIFVLPTFTEMLTSMN 216
>gi|313127312|ref|YP_004037582.1| archaeal flagella assembly protein j [Halogeometricum borinquense
DSM 11551]
gi|312293677|gb|ADQ68137.1| archaeal flagella assembly protein J [Halogeometricum borinquense
DSM 11551]
Length = 636
Score = 42.6 bits (99), Expect = 0.084, Method: Composition-based stats.
Identities = 29/160 (18%), Positives = 53/160 (33%), Gaps = 10/160 (6%)
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
L + + L+ + + V+L GYV + P ++ + + R D +
Sbjct: 362 ATLAFVPLGVVASLVAAAAKSNIVDVVLAGYVVYAIPVGVVAVRRARLDGAKDRELKDFV 421
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPN--------RQVAF 239
+ V G +A+ VA ++ PLS+++ L R A
Sbjct: 422 HAISGHVSLGRPFPEAVEHVAREVE--LGPLSDDVADLALNLRLTSPNTGTDEDLRTAAL 479
Query: 240 ENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSET 279
+ F R +I + G+ G L SE
Sbjct: 480 DRFVERVGTPMAEQTIGLVIGALDAGSDTGTVFETLQSEV 519
>gi|254241103|ref|ZP_04934425.1| hypothetical protein PA2G_01790 [Pseudomonas aeruginosa 2192]
gi|126194481|gb|EAZ58544.1| hypothetical protein PA2G_01790 [Pseudomonas aeruginosa 2192]
Length = 395
Score = 42.6 bits (99), Expect = 0.084, Method: Composition-based stats.
Identities = 23/147 (15%), Positives = 53/147 (36%), Gaps = 7/147 (4%)
Query: 169 SNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAE 228
+ R+ A+ L + +G+S+ A+ A++ G + L +
Sbjct: 45 RRNLGSRRRLKAEELNMAIHELATMLAAGVSMADAVE--AQERGARHPKLITALQAMANG 102
Query: 229 LSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAE 288
L + V E+ + L+ + ++ +LR ++ ER AE
Sbjct: 103 LRQGQSFPVVLESAGL-----DLPRYVYQLVAAGEMTGNLAGALRDCATQMEYERRTRAE 157
Query: 289 KKAASLGPKLTVPMIIFFLPVLILVII 315
+ A + P + V + + L + ++
Sbjct: 158 LQGALIYPAILVLSGVLAVATLFVFVV 184
>gi|326331490|ref|ZP_08197780.1| putative integral membrane protein [Nocardioidaceae bacterium
Broad-1]
gi|325950746|gb|EGD42796.1| putative integral membrane protein [Nocardioidaceae bacterium
Broad-1]
Length = 238
Score = 42.6 bits (99), Expect = 0.085, Method: Composition-based stats.
Identities = 30/173 (17%), Positives = 57/173 (32%), Gaps = 5/173 (2%)
Query: 144 YPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQA 203
+ + A++L P V +S Q A + L + G+ ++QA
Sbjct: 20 WQVTGWILALVLAPAACIGLP-VLLSTAGATTQIQRLEALEEWTRSLSGVLTVGVGLEQA 78
Query: 204 LRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQ-SD 262
L + P+ E+ A L + + A F + LI +
Sbjct: 79 LI---ATLRSTPAPIVAEVNRLAARLRARWSTEDALRAFADELNDATGDLVAANLILGAR 135
Query: 263 RYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVII 315
R G + L L ++ + +A P+ T + V+I+V+
Sbjct: 136 RRGAGLAAVLEGLAESVAADVRARRQVEADRAKPRATARWVTIISAVVIVVLA 188
>gi|21221973|ref|NP_627752.1| integral membrane protein [Streptomyces coelicolor A3(2)]
gi|4539572|emb|CAB38491.1| putative integral membrane protein [Streptomyces coelicolor A3(2)]
Length = 267
Score = 42.6 bits (99), Expect = 0.085, Method: Composition-based stats.
Identities = 17/104 (16%), Positives = 39/104 (37%), Gaps = 3/104 (2%)
Query: 217 PLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLV 276
P+ + + AE+ A+ + + L +++ G + L
Sbjct: 153 PVGDALGRGAAEVRLGGEPAGAWRGLAA---VPGAVPLARLLERAEVSGLPAAGPVARLA 209
Query: 277 SETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAIL 320
++ R++ +A +T P+ + FLP I V + P ++
Sbjct: 210 AQVRADWARTTTVRARRAAVMVTAPVGLCFLPAFIAVGVLPVVI 253
>gi|218891163|ref|YP_002440029.1| putative type II secretion system protein [Pseudomonas aeruginosa
LESB58]
gi|254235656|ref|ZP_04928979.1| hypothetical protein PACG_01590 [Pseudomonas aeruginosa C3719]
gi|126167587|gb|EAZ53098.1| hypothetical protein PACG_01590 [Pseudomonas aeruginosa C3719]
gi|218771388|emb|CAW27155.1| probable type II secretion system protein [Pseudomonas aeruginosa
LESB58]
Length = 395
Score = 42.6 bits (99), Expect = 0.088, Method: Composition-based stats.
Identities = 23/147 (15%), Positives = 53/147 (36%), Gaps = 7/147 (4%)
Query: 169 SNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAE 228
+ R+ A+ L + +G+S+ A+ A++ G + L +
Sbjct: 45 RRNLGSRRRLKAEELNMAIHELATMLAAGVSMADAVE--AQERGARHPKLITALQAMANG 102
Query: 229 LSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAE 288
L + V E+ + L+ + ++ +LR ++ ER AE
Sbjct: 103 LRQGQSFPVVLESAGL-----DLPRYVYQLVAAGEMTGNLAGALRDCATQMEYERRTRAE 157
Query: 289 KKAASLGPKLTVPMIIFFLPVLILVII 315
+ A + P + V + + L + ++
Sbjct: 158 LQGALIYPAILVLSGVLAVATLFVFVV 184
>gi|266619934|ref|ZP_06112869.1| conserved hypothetical protein [Clostridium hathewayi DSM 13479]
gi|288868472|gb|EFD00771.1| conserved hypothetical protein [Clostridium hathewayi DSM 13479]
Length = 292
Score = 42.6 bits (99), Expect = 0.089, Method: Composition-based stats.
Identities = 37/249 (14%), Positives = 79/249 (31%), Gaps = 21/249 (8%)
Query: 53 EILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYS 112
R + Q+ + +L + + L + + L AG E +
Sbjct: 30 RTSRTMLMVRKQQGGRNEKLAEVYLTKIAVLLAPCLKLDRLRRNKLQSALNIAGL--ELT 87
Query: 113 LNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLV 172
+ V + + + +F ++ L V Y F + V
Sbjct: 88 PEVYTAKAWVTAGMTGLCALPAVFVMPLMVPLIIGLAVALWFSTYYAAF--------DFV 139
Query: 173 QKRQSSIKRAWPDALDLLLICVESGISIDQ---ALRRVAEDIGGQSVPLSEEMLLTIAEL 229
+KR+ I+ P + G +++ L+ + E+ TIA++
Sbjct: 140 RKRRKLIEAEIPRF------ALTIGQNLENDRDVLKILTSYRRVAGRDFGAELDQTIADM 193
Query: 230 SFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEK 289
N + A +F R + + + L+ R G +++ + R +K
Sbjct: 194 -ITSNYENALLHFETRIGSPMLSDVIRGLVGVLR-GDDQRMYFKMICFDMRQIEQNNLKK 251
Query: 290 KAASLGPKL 298
+AA K+
Sbjct: 252 EAAKRPKKI 260
>gi|254414459|ref|ZP_05028225.1| Bacterial type II secretion system protein F domain [Microcoleus
chthonoplastes PCC 7420]
gi|196178689|gb|EDX73687.1| Bacterial type II secretion system protein F domain [Microcoleus
chthonoplastes PCC 7420]
Length = 406
Score = 42.6 bits (99), Expect = 0.090, Method: Composition-based stats.
Identities = 21/147 (14%), Positives = 53/147 (36%), Gaps = 16/147 (10%)
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
+ V +G++I + L ++E + L + + +E+ + A
Sbjct: 71 FSRQFAVMVNAGVAIVRCLGILSEQCA--NPKLKKSLTAISSEVQQGTSLSDAMREHPA- 127
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
C +++Q+ G + + L L ++ + K+A +T P+++
Sbjct: 128 ----CFDQLYVSMVQAGEVGGVLDEVLNRLAKLLEDMARLQNQIKSA-----MTYPLVVG 178
Query: 306 FLPVLIL----VIIGPAILSIIDTMKD 328
VL+ + + P I + +
Sbjct: 179 GFAVLVFLGMTIFLIPIFAGIFEEIGG 205
>gi|254252517|ref|ZP_04945835.1| Type II secretion system protein [Burkholderia dolosa AUO158]
gi|124895126|gb|EAY69006.1| Type II secretion system protein [Burkholderia dolosa AUO158]
Length = 303
Score = 42.6 bits (99), Expect = 0.091, Method: Composition-based stats.
Identities = 23/132 (17%), Positives = 45/132 (34%), Gaps = 11/132 (8%)
Query: 122 VVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKR 181
+ ++ +++ I G L F ++G W+++ +Q+R+ I R
Sbjct: 77 ALAVLAVLIAFAAIAGSHGGLLACFAALALGGAIVGV--------WLASRIQRRRLKIVR 128
Query: 182 AWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFEN 241
P LD ++ V G S+ A + + PL + L A +
Sbjct: 129 QIPSFLDGIVRLVTLGNSVPAAFQSA---LLTTEEPLRSCLDDVSRMLRGGVEIDRAMMH 185
Query: 242 FYNRTQMDCVRN 253
+ D R
Sbjct: 186 VAKVYRTDESRT 197
>gi|30249238|ref|NP_841308.1| type II secretion system protein [Nitrosomonas europaea ATCC 19718]
gi|30180557|emb|CAD85167.1| Bacterial type II secretion system protein [Nitrosomonas europaea
ATCC 19718]
Length = 406
Score = 42.6 bits (99), Expect = 0.091, Method: Composition-based stats.
Identities = 28/151 (18%), Positives = 55/151 (36%), Gaps = 9/151 (5%)
Query: 167 WISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTI 226
+S V + R + + V SG++I+QAL+ V+ + P + +
Sbjct: 52 LLSRPVTLNRRIPIRDVALFCEQIGTMVGSGLNIEQALQVVSR--QKGNRPSARMARHLL 109
Query: 227 AELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLME 286
+ A + M ++I++ G + + L + +
Sbjct: 110 PRIQAGGPLSDALD---IEVGMP---RYLPSMIRAAESGGRLAEGLETAGRYLQRQASTR 163
Query: 287 AEKK-AASLGPKLTVPMIIFFLPVLILVIIG 316
AE A + + V ++I L VL +VI G
Sbjct: 164 AEIANALTYPVIVLVTVMIALLIVLTVVIPG 194
>gi|157164422|ref|YP_001466823.1| transcription regulator AsnC [Campylobacter concisus 13826]
gi|112801342|gb|EAT98686.1| type II secretion system protein [Campylobacter concisus 13826]
Length = 411
Score = 42.6 bits (99), Expect = 0.092, Method: Composition-based stats.
Identities = 29/144 (20%), Positives = 58/144 (40%), Gaps = 10/144 (6%)
Query: 187 LDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRT 246
+ L + +GISI +++ VA + L EL+ + + ENF
Sbjct: 76 IRQLSVMTNAGISIHDSIKEVAN--STEDKRLKFIFQTIDEELNQGSSLTNSIENFK--- 130
Query: 247 QMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSE-RLMEAEKKAASLGPKLTVPMIIF 305
+ + + T A+I+ ++ D+L L S + + KKA +TV I
Sbjct: 131 --EELGDVTLAMIRLGESTGNMADALAKLASILQEVWDNQQKFKKAIRYP--ITVICAII 186
Query: 306 FLPVLILVIIGPAILSIIDTMKDH 329
V++++++ P I + +
Sbjct: 187 IAFVILMILVVPQFREIFEQLNAE 210
>gi|163841486|ref|YP_001625891.1| type II secretion system protein [Renibacterium salmoninarum ATCC
33209]
gi|162954962|gb|ABY24477.1| type II secretion system protein [Renibacterium salmoninarum ATCC
33209]
Length = 184
Score = 42.6 bits (99), Expect = 0.093, Method: Composition-based stats.
Identities = 31/131 (23%), Positives = 55/131 (41%), Gaps = 3/131 (2%)
Query: 195 ESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNA 254
E G S+ AL R A+ S+ S E+ L+ + A+ + + + ++
Sbjct: 56 EVGASLSTALARQAQ---VCSMEFSTELATVSTALAMGMDWSAAWAHVPVKARDGPLQQL 112
Query: 255 TQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVI 314
AL + G LR R E +++AA L KL +PM + LP I +
Sbjct: 113 ELALKFTASTGAPSSALLRAEARRIRRAAHRELQQRAAVLSVKLVLPMGLCALPAFICLG 172
Query: 315 IGPAILSIIDT 325
+ P +L+++
Sbjct: 173 VVPVLLALLPA 183
>gi|107102197|ref|ZP_01366115.1| hypothetical protein PaerPA_01003248 [Pseudomonas aeruginosa PACS2]
Length = 395
Score = 42.6 bits (99), Expect = 0.095, Method: Composition-based stats.
Identities = 23/142 (16%), Positives = 52/142 (36%), Gaps = 7/142 (4%)
Query: 174 KRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLP 233
R+ A+ L + +G+S+ A+ A++ G + L + L
Sbjct: 50 SRRRLKAEELNMAIHELATMLAAGVSMADAVE--AQERGARHPKLITALQAMANGLRQGQ 107
Query: 234 NRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAAS 293
+ V E+ + L+ + ++ +LR ++ ER AE + A
Sbjct: 108 SFPVVLESAGL-----DLPRYVYQLVAAGEMTGNLAGALRDCATQMEYERRTRAELQGAL 162
Query: 294 LGPKLTVPMIIFFLPVLILVII 315
+ P + V + + L + ++
Sbjct: 163 IYPAILVLSGVLAVATLFVFVV 184
>gi|326330147|ref|ZP_08196458.1| putative integral membrane protein [Nocardioidaceae bacterium
Broad-1]
gi|325951960|gb|EGD43989.1| putative integral membrane protein [Nocardioidaceae bacterium
Broad-1]
Length = 284
Score = 42.2 bits (98), Expect = 0.10, Method: Composition-based stats.
Identities = 31/178 (17%), Positives = 64/178 (35%), Gaps = 14/178 (7%)
Query: 125 IIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWP 184
++ LI GI + L + + AVI+ P + ++ ++ A
Sbjct: 51 VLLLIAGIFF-----GALVWLLTGWILAVIIAPATAVGLPVLLSTSSATAEIQRLE-AMQ 104
Query: 185 DALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYN 244
+ L + G+ ++QAL + P++ E+ +A L + + A F +
Sbjct: 105 EWTRALSGVLTVGVGLEQALI---TTLRSTPKPIAGEVTNLVARLRSRWDTERAIRTFAD 161
Query: 245 RTQMDCVRNATQALIQSDRY-GTSIGDSLRVLV----SETRSERLMEAEKKAASLGPK 297
LI++ R G + L L + R+ R +EA++ +
Sbjct: 162 ELDDATGDLVAAYLIRASRRRGAGLASVLEDLAVSVAEDVRARRRVEADRAKPRATAR 219
>gi|117928945|ref|YP_873496.1| type II secretion system protein [Acidothermus cellulolyticus 11B]
gi|117649408|gb|ABK53510.1| type II secretion system protein [Acidothermus cellulolyticus 11B]
Length = 286
Score = 42.2 bits (98), Expect = 0.10, Method: Composition-based stats.
Identities = 33/196 (16%), Positives = 68/196 (34%), Gaps = 17/196 (8%)
Query: 94 VDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAV 153
+ + I + LR AG + + + L+ G
Sbjct: 34 ISQRIADTLRQAGLETVTTRH-------------LVAAGGAAAGVVGTAVAAISHTATIA 80
Query: 154 ILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGG 213
CAP + + ++R++ ++ WPD +D L V +G+++ +A+ ++A+
Sbjct: 81 AAFAAFAGCAPWTLVRHRARRRRAELRAVWPDVVDNLASAVRAGLALPEAVAQLADRGPD 140
Query: 214 QSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRY-GTSIGDSL 272
+ P + N + + R ++L + GT +G L
Sbjct: 141 ELRP---TFRRFADDYRVSGNFAASLDELKRRLADPTADRIIESLRMAREVGGTDLGRLL 197
Query: 273 RVLVSETRSERLMEAE 288
R L R + + AE
Sbjct: 198 RTLSVFLREDLRIRAE 213
>gi|254478244|ref|ZP_05091625.1| Bacterial type II secretion system protein F domain
[Carboxydibrachium pacificum DSM 12653]
gi|214035840|gb|EEB76533.1| Bacterial type II secretion system protein F domain
[Carboxydibrachium pacificum DSM 12653]
Length = 249
Score = 42.2 bits (98), Expect = 0.11, Method: Composition-based stats.
Identities = 36/266 (13%), Positives = 103/266 (38%), Gaps = 47/266 (17%)
Query: 80 LRNFVKKLNLKAILVDENIVNK----LRAAG------FRSEYSLNILLVVRLVVPIIFLI 129
+R V + +L+ I + ++++ K ++A G F ++ L + L++ + ++
Sbjct: 1 MRRIVSEKSLRRIGIKQDMIEKWDKEIKAVGGVKVLFFEAQDVLELFSFAALILGGLLVL 60
Query: 130 LGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSI--KRAWPDAL 187
I + G + + +V + + F + ++ + S + P AL
Sbjct: 61 TVIGAVNGANVF-------ALLSVFIGSAIMFY---QYWRRPIESYKESFYKEEELPAAL 110
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQ 247
++ + +E G++ + + + G L E + + + A + +++
Sbjct: 111 EIFISGLEVGMTAENIIGYIVRTRKGVVRDLLYE---AQVRIDTGSSLKDALLSAADKSL 167
Query: 248 MDCVRNATQALIQSDRYGTSIGDSLRVLVSETRS-----------ERLMEAEKKAASLGP 296
D + +A+ T +S++ + R + + K+A +L
Sbjct: 168 NDHFKRFAKAV-------TGEYESVK----DMRENLEELLEEVEEKNYNQKIKRAGTLDN 216
Query: 297 KLTVPMIIFFLPVLILVIIGPAILSI 322
L P+ + + ++++ P ++S+
Sbjct: 217 SLFFPIFLGYFVPILIMFALPFVISL 242
>gi|251779219|ref|ZP_04822139.1| bacterial type II secretion system protein F [Clostridium botulinum
E1 str. 'BoNT E Beluga']
gi|243083534|gb|EES49424.1| bacterial type II secretion system protein F [Clostridium botulinum
E1 str. 'BoNT E Beluga']
Length = 358
Score = 42.2 bits (98), Expect = 0.11, Method: Composition-based stats.
Identities = 42/236 (17%), Positives = 81/236 (34%), Gaps = 40/236 (16%)
Query: 107 FRSEYSLNILLVVRLVVPIIFLILGII---WIFGYDKLLEYPFQL-------------RV 150
S I+L++ ++ +IFL L +I + + PF ++
Sbjct: 122 IISSLMYPIILMISILALMIFLTLVVIPNFYGIYLSIGITPPFSCEKIYELSNYIKENQL 181
Query: 151 GAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDA--------LDLLLICVESGISIDQ 202
I G P + I ++ +R S+ + + +L I V SG++I
Sbjct: 182 FTFIFFLCWGVFIPFICIKRVMCERGISLLSNFKIFNKFLEYVIIFILSIIVNSGMNISY 241
Query: 203 ALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSD 262
L ++ + + E++ + A T + T A+I+
Sbjct: 242 GLMYCSDSMNFHH--IGEKLNKINEGILRGGTLSEAI------TDTNIFSKYTIAVIRVR 293
Query: 263 RYGTSIGDSLRVLVSETRSERLMEAEK--------KAASLGPKLTVPMIIFFLPVL 310
SIG++L+ L + K S+ +TV IIF +P+
Sbjct: 294 EESGSIGEALKELSVILEKSLIKRINKCLSLLQPFLIISISILVTVFFIIFIMPLF 349
>gi|227505649|ref|ZP_03935698.1| type II secretion system protein F [Corynebacterium striatum ATCC
6940]
gi|227197802|gb|EEI77850.1| type II secretion system protein F [Corynebacterium striatum ATCC
6940]
Length = 176
Score = 42.2 bits (98), Expect = 0.12, Method: Composition-based stats.
Identities = 36/148 (24%), Positives = 55/148 (37%), Gaps = 9/148 (6%)
Query: 175 RQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPN 234
RQ L+L +CVE+G+S+ AL VA A L
Sbjct: 33 RQQPAPLDVAADLELFAVCVEAGLSVRDALAGVASTSA------CPAWQEAAALLGVGAP 86
Query: 235 RQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASL 294
A + + + L S G +I LV R+E A +A
Sbjct: 87 MSSAIAVLREQ---PQLADLAGLLELSGESGAAIAAGCHRLVETLRAEAAANAVARAERA 143
Query: 295 GPKLTVPMIIFFLPVLILVIIGPAILSI 322
G + VP+ + FLP I++ + P I+S+
Sbjct: 144 GVFIAVPLAVCFLPAFIVLGLVPVIISL 171
>gi|256372253|ref|YP_003110077.1| hypothetical protein Afer_1481 [Acidimicrobium ferrooxidans DSM
10331]
gi|256008837|gb|ACU54404.1| hypothetical protein Afer_1481 [Acidimicrobium ferrooxidans DSM
10331]
Length = 306
Score = 42.2 bits (98), Expect = 0.12, Method: Composition-based stats.
Identities = 44/308 (14%), Positives = 117/308 (37%), Gaps = 25/308 (8%)
Query: 21 AVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSL 80
+SI + ++A+ + + G + R R +++T + +R + + +
Sbjct: 9 GISILAGLFAIALVAGVRGLIGYR-----------RSRRLTRWHDHPSRTRSGSATVRFV 57
Query: 81 RNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDK 140
N +++ +L + L G ++ + ++ + L++ ++ + + +F
Sbjct: 58 MNALERRTTSELLQVD-----LHLLGMDTDEFASFVMRMSLMLLLLIVATLGVLVFIKLM 112
Query: 141 LLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGI-S 199
+ + +I+ G ++ + + ++ L L + + +G +
Sbjct: 113 SMNLALIGGIVGIIIAFPGGLVFAETYLRSQAKAARAESALLIAPILSYLRLALTAGAGT 172
Query: 200 IDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVA--FENFYNRTQMDCVRNATQA 257
++ A+ G + P L ++ L R +A + ++ Q+ + A
Sbjct: 173 MESAMSEYFRVYGTYANPRGRVWL--NDWMTGLAKRTLAEVWSDWGRTYQVGIMVTLGSA 230
Query: 258 LIQSDRYGTSIGDSLRVLVSETRSERL----MEAEKKAASLGPKLTVPMIIFFLPVLILV 313
L Q+ R G + LR L+ +T + + + L M++F V++ +
Sbjct: 231 LAQAQRTGAPLVPVLRSLIDQTWRQTTDLVDQTLRSRQNTASLLLLPYMVVFVGTVIVGL 290
Query: 314 IIGPAILS 321
+G A LS
Sbjct: 291 FLGNAGLS 298
>gi|188590236|ref|YP_001921571.1| bacterial type II secretion system protein F domain [Clostridium
botulinum E3 str. Alaska E43]
gi|188500517|gb|ACD53653.1| bacterial type II secretion system protein F [Clostridium botulinum
E3 str. Alaska E43]
Length = 358
Score = 42.2 bits (98), Expect = 0.12, Method: Composition-based stats.
Identities = 39/204 (19%), Positives = 74/204 (36%), Gaps = 27/204 (13%)
Query: 126 IFLILGIIWIFGYDKLLEYPFQLR---VGAVILIGYVGFCAPSVWISNLVQKRQSSIKRA 182
I+L +GI F +K+ E ++ + I G P + I ++ +R S+
Sbjct: 154 IYLSIGITPPFSCEKIYELSNYIKENQLFTFIYFLCWGVFIPFICIKRVMCERGISLLSN 213
Query: 183 WPDA--------LDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPN 234
+ + +L I V SG++I L ++ + + E++ +
Sbjct: 214 FKIFNKFLEYVIIFILSIIVNSGMNISYGLMYCSDSMNFNH--IGEKLNKINEGILRGGT 271
Query: 235 RQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEK----- 289
A T + T A+I+ SIG++L+ L + K
Sbjct: 272 LSEAI------TDTNIFSKYTIAVIRVREESGSIGEALKELSVILEKSLIKRINKCLSLL 325
Query: 290 ---KAASLGPKLTVPMIIFFLPVL 310
S+ +TV IIF +P+
Sbjct: 326 QPFLIISISILVTVFFIIFIMPLF 349
>gi|20091901|ref|NP_617976.1| flagellar assembly protein J [Methanosarcina acetivorans C2A]
gi|19917097|gb|AAM06456.1| flagella accessory protein J [Methanosarcina acetivorans C2A]
Length = 520
Score = 42.2 bits (98), Expect = 0.12, Method: Composition-based stats.
Identities = 42/234 (17%), Positives = 90/234 (38%), Gaps = 24/234 (10%)
Query: 83 FVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLL 142
F+ L L I K+ A F+S+ I L+ R+++PI ++L + + G +
Sbjct: 197 FISGLALYIIYKAAPAEKKVHALRFKSKEQEQIRLLSRVLLPIGAIVLIALILRGTE--- 253
Query: 143 EYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLL-LICVESGISID 201
IL+G F P I+ ++ + ++P + L + +GI+I
Sbjct: 254 --------LKFILLGVTVFTLPIGIIAMEDDRKINERDSSFPTFIKTLGTLAGTTGITIR 305
Query: 202 QALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQS 261
A+ ++ + G P EE+ + LS ++ +E F T + + ++ +
Sbjct: 306 SAMEKLDRENIGCLKPGVEELH---SGLSMGFKSKLCWEKFIGETGSELINRCSRIFTDA 362
Query: 262 DRYGTSIGDSLRVLVSE------TRSERLMEA---EKKAASLGPKLTVPMIIFF 306
G + ++ + R +R M + A +L + ++
Sbjct: 363 VELGGDPAEIGNIVSNSSLAIVLLRMKRQMVSSGFRGLAIALHAVMVGLLVFVL 416
>gi|227549691|ref|ZP_03979740.1| conserved hypothetical protein [Corynebacterium lipophiloflavum DSM
44291]
gi|227078187|gb|EEI16150.1| conserved hypothetical protein [Corynebacterium lipophiloflavum DSM
44291]
Length = 122
Score = 41.8 bits (97), Expect = 0.13, Method: Composition-based stats.
Identities = 20/106 (18%), Positives = 43/106 (40%), Gaps = 3/106 (2%)
Query: 217 PLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLV 276
PL+++ A + A+ +F+ + + S GT++ +
Sbjct: 10 PLAQQWRTVAALSALGVEPDKAWADFHRVPGGAELASLVGL---SHSSGTAVAAGCERIA 66
Query: 277 SETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
S R +A +A G +++P+ FFLP ++ + P +S+
Sbjct: 67 SRLRDAAADDATARAERAGVLISIPLTAFFLPAFFVLGLIPTAISL 112
>gi|303228391|ref|ZP_07315224.1| type II secretion system F domain protein [Veillonella atypica
ACS-134-V-Col7a]
gi|302516893|gb|EFL58802.1| type II secretion system F domain protein [Veillonella atypica
ACS-134-V-Col7a]
Length = 390
Score = 41.8 bits (97), Expect = 0.13, Method: Composition-based stats.
Identities = 29/140 (20%), Positives = 56/140 (40%), Gaps = 18/140 (12%)
Query: 190 LLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAE-LSFLPNRQVAFENFYNRTQM 248
L + ++SGIS+ ++L + + G L ++ E + A
Sbjct: 64 LGLLLQSGISLRRSLELL---MDGSKTMLY----RSLYEGIQRGQPLSEALRE------- 109
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSET-RSERLMEAEKKAASLGPKLTVPMIIFFL 307
AL++S ++G++L+ + S R + + A S L V M +FFL
Sbjct: 110 KGFPPIALALLESGEMSGNVGEALQYIASYYERERKYQQKIVSAISYPLFLLVLMNVFFL 169
Query: 308 PVLILVIIGPAILSIIDTMK 327
++ +I P+ + TM
Sbjct: 170 VTILFII--PSFTRVFATMH 187
>gi|254389726|ref|ZP_05004951.1| type II secretion system protein [Streptomyces clavuligerus ATCC
27064]
gi|197703438|gb|EDY49250.1| type II secretion system protein [Streptomyces clavuligerus ATCC
27064]
Length = 305
Score = 41.8 bits (97), Expect = 0.13, Method: Composition-based stats.
Identities = 27/162 (16%), Positives = 59/162 (36%), Gaps = 8/162 (4%)
Query: 133 IWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKR--AWPDALDLL 190
+ L + F + ++ V P W+ N ++ I + A + + +
Sbjct: 65 VAGAALGGLGVWLFTGWLTGGLVTVAVVLGLP--WLLNTSGSGKTQIDKLEAIEEWVRRM 122
Query: 191 LICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDC 250
G+S++ ++R + + EE+ L ++ Q A++ F +
Sbjct: 123 SDIHTVGVSLEATIQR---SLETVPKAIREEVQLLVSREQSGWVPQDAYKAFADDLNDAL 179
Query: 251 VRNATQALI-QSDRYGTSIGDSLRVLVSETRSERLMEAEKKA 291
V LI + G+ + ++R L + E L E +A
Sbjct: 180 VDEVAALLILHVEDRGSGLSKAMRELAEALQHEVLARREVEA 221
>gi|290512546|ref|ZP_06551912.1| protein transporter HofC [Klebsiella sp. 1_1_55]
gi|289774887|gb|EFD82889.1| protein transporter HofC [Klebsiella sp. 1_1_55]
Length = 401
Score = 41.8 bits (97), Expect = 0.14, Method: Composition-based stats.
Identities = 24/148 (16%), Positives = 49/148 (33%), Gaps = 10/148 (6%)
Query: 181 RAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFE 240
+ +L + +GIS Q L+ V + + + ++ A
Sbjct: 261 QQLSLIFTILALTQSAGISFLQGLQSV--EATLSCPLWRQRLAQARTLIAQGEPIWQAL- 317
Query: 241 NFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV 300
+R LI++ ++ L L R + A+ AA L P + V
Sbjct: 318 ---SRCG--GFTPLCLQLIRTGESAGALDQMLENLAHHHREQTHQRADSLAAHLEPIMLV 372
Query: 301 PMIIFFLPVLILVIIGPAILSIIDTMKD 328
I L +++V + + + D +
Sbjct: 373 --ITGSLVGILVVAMYLPVFHLGDAIGG 398
>gi|257051104|ref|YP_003128937.1| type II secretion system protein [Halorhabdus utahensis DSM 12940]
gi|256689867|gb|ACV10204.1| type II secretion system protein [Halorhabdus utahensis DSM 12940]
Length = 568
Score = 41.8 bits (97), Expect = 0.14, Method: Composition-based stats.
Identities = 28/177 (15%), Positives = 62/177 (35%), Gaps = 12/177 (6%)
Query: 120 RLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVIL---IGYVGFCAPSVWISNLVQKRQ 176
R + +++ +G++ F +L V + L + + P + + +
Sbjct: 290 RFLPTLLWGAIGVLAGFSLVNVLGVAHLAPVASAGLGTGAMLIAYVRPILHVRTYI---- 345
Query: 177 SSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQ 236
++ DAL L V+ G S++ A++R + + + L E + +
Sbjct: 346 RDVESNLTDALYLTGRLVDDGKSVETAIQRAGDQVPAATGELLE--QAAGLQRRLHLSVH 403
Query: 237 VAF---ENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKK 290
AF + VR + L + G G ++ + R +EA +
Sbjct: 404 DAFLGEYGVVSDVPSPRVRATVELLAIAAEQGAPAGRAIVSMADHLDELRDVEARTR 460
>gi|326445375|ref|ZP_08220109.1| type II secretion system protein [Streptomyces clavuligerus ATCC
27064]
Length = 309
Score = 41.8 bits (97), Expect = 0.14, Method: Composition-based stats.
Identities = 27/162 (16%), Positives = 59/162 (36%), Gaps = 8/162 (4%)
Query: 133 IWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKR--AWPDALDLL 190
+ L + F + ++ V P W+ N ++ I + A + + +
Sbjct: 69 VAGAALGGLGVWLFTGWLTGGLVTVAVVLGLP--WLLNTSGSGKTQIDKLEAIEEWVRRM 126
Query: 191 LICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDC 250
G+S++ ++R + + EE+ L ++ Q A++ F +
Sbjct: 127 SDIHTVGVSLEATIQR---SLETVPKAIREEVQLLVSREQSGWVPQDAYKAFADDLNDAL 183
Query: 251 VRNATQALI-QSDRYGTSIGDSLRVLVSETRSERLMEAEKKA 291
V LI + G+ + ++R L + E L E +A
Sbjct: 184 VDEVAALLILHVEDRGSGLSKAMRELAEALQHEVLARREVEA 225
>gi|332710092|ref|ZP_08430045.1| type II secretory pathway, component PulF [Lyngbya majuscula 3L]
gi|332351050|gb|EGJ30637.1| type II secretory pathway, component PulF [Lyngbya majuscula 3L]
Length = 405
Score = 41.8 bits (97), Expect = 0.14, Method: Composition-based stats.
Identities = 27/162 (16%), Positives = 59/162 (36%), Gaps = 8/162 (4%)
Query: 168 ISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIA 227
+S+L +K + + V +G++I + L + E + L + ++ A
Sbjct: 52 LSDLSEKFTNVTIKDKAVFSRQFAAMVNAGVAIVRCLGVLGEQC--SNPKLKKALMNISA 109
Query: 228 ELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEA 287
E+ N A R DC N +++Q+ G + + L L ++
Sbjct: 110 EVQQGTNLSDAM-----RKHPDCFDNLYVSMVQAGEVGGVLDEVLNRLAKLLEDMNRLQN 164
Query: 288 EKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMKDH 329
+ K+A P + + + + + +I P I +
Sbjct: 165 QIKSAMAYPSVVGFLALLVFLAMTMFLI-PIFAGIFQDLGTE 205
>gi|303230740|ref|ZP_07317487.1| type II secretion system F domain protein [Veillonella atypica
ACS-049-V-Sch6]
gi|302514500|gb|EFL56495.1| type II secretion system F domain protein [Veillonella atypica
ACS-049-V-Sch6]
Length = 390
Score = 41.8 bits (97), Expect = 0.15, Method: Composition-based stats.
Identities = 29/140 (20%), Positives = 56/140 (40%), Gaps = 18/140 (12%)
Query: 190 LLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAE-LSFLPNRQVAFENFYNRTQM 248
L + ++SGIS+ ++L + + G L ++ E + A
Sbjct: 64 LGLLLQSGISLRRSLELL---MDGSKTMLY----RSLYEGIQRGQPLSEALRE------- 109
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSET-RSERLMEAEKKAASLGPKLTVPMIIFFL 307
AL++S ++G++L+ + S R + + A S L V M +FFL
Sbjct: 110 KGFPPIALALLESGEMSGNVGEALQYIASYYERERKYQQKIVSAISYPLFLLVLMNVFFL 169
Query: 308 PVLILVIIGPAILSIIDTMK 327
++ +I P+ + TM
Sbjct: 170 VTILFII--PSFTRVFATMH 187
>gi|28572730|ref|NP_789510.1| hypothetical protein TW582 [Tropheryma whipplei TW08/27]
gi|28410863|emb|CAD67248.1| putative membrane protein [Tropheryma whipplei TW08/27]
Length = 294
Score = 41.8 bits (97), Expect = 0.16, Method: Composition-based stats.
Identities = 29/179 (16%), Positives = 64/179 (35%), Gaps = 5/179 (2%)
Query: 111 YSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISN 170
+S I + +R V F+ L +++ + ++ + + + +G P + ++
Sbjct: 47 HSRLIAVGLRNVSLGSFVSLTVLFGVVFAAIITLVTGIYIF-CVFGFLIGIATPILIVNY 105
Query: 171 LVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELS 230
++ S WPD ++ ++ V G+ + +AL ++ V + + E
Sbjct: 106 QYRRLVSLDSNIWPDIVENVISAVRVGMGLPEALCSLS---RFGPVRIRQIFCNLENEYG 162
Query: 231 FLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTS-IGDSLRVLVSETRSERLMEAE 288
N A N + + + G S + LR L R + AE
Sbjct: 163 ATGNFASAVANAKCALADPKADRILETVQLARSLGGSELIKVLRNLSEYMREDLATRAE 221
>gi|251795115|ref|YP_003009846.1| hypothetical protein Pjdr2_1080 [Paenibacillus sp. JDR-2]
gi|247542741|gb|ACS99759.1| hypothetical protein Pjdr2_1080 [Paenibacillus sp. JDR-2]
Length = 288
Score = 41.8 bits (97), Expect = 0.16, Method: Composition-based stats.
Identities = 26/165 (15%), Positives = 53/165 (32%), Gaps = 10/165 (6%)
Query: 94 VDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAV 153
D I AG R ++ + ++ ++ L V
Sbjct: 62 EDAFIERATLLAGCGVTADPAWYSAARRILLFLLPVIAALF----GGLSIARGVWLCYTV 117
Query: 154 ILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGG 213
+L+G+V W+ + + R I + + LL ES + I L R
Sbjct: 118 VLVGFVLLYWDLPWLRSFRRIRAQRITKEIYLMSNQLLYLSESALHIHTKLTR----CIP 173
Query: 214 QSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQAL 258
+ L ++ +AE + + A F +R + + + +
Sbjct: 174 FTRTLRGDLERLLAEWYH--DAEQALRRFKHRIGTEDGMSFVETI 216
>gi|169835015|ref|YP_001715907.1| hypothetical protein CLK_A0280 [Clostridium botulinum A3 str. Loch
Maree]
gi|169409122|gb|ACA57532.1| hypothetical protein CLK_A0280 [Clostridium botulinum A3 str. Loch
Maree]
Length = 359
Score = 41.8 bits (97), Expect = 0.16, Method: Composition-based stats.
Identities = 32/182 (17%), Positives = 72/182 (39%), Gaps = 9/182 (4%)
Query: 149 RVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISID-QALRRV 207
R+ ++I F P + + + R+ IK+ ++LL + + S ++I Q L +
Sbjct: 183 RLLLYLIIVISSFFIPDIILFTIANIRKEEIKKEELYLINLLAV-IGSNLNITAQGLMTI 241
Query: 208 AEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTS 267
+ PL E+ ++++ NR A+ F + L Q +
Sbjct: 242 LTNNAKYLKPLLEKF-----QMAYYMNRDEAYNLFMLDKDKQAINKIITLLRQIEDSNKE 296
Query: 268 IG-DSLRVLVSETRSERLMEAEKKA-ASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDT 325
+ ++++ R +E + K G L + I L ++++V + ++ +
Sbjct: 297 LALNNIKKYNENIDKIRKLEYQNKIENKEGLILLLFTIGTVLLMMLIVNFAVSSVNQVQN 356
Query: 326 MK 327
MK
Sbjct: 357 MK 358
>gi|229587468|ref|YP_002860506.1| hypothetical protein CLJ_0199 [Clostridium botulinum Ba4 str. 657]
gi|229260178|gb|ACQ51215.1| hypothetical protein CLJ_0199 [Clostridium botulinum Ba4 str. 657]
Length = 359
Score = 41.8 bits (97), Expect = 0.16, Method: Composition-based stats.
Identities = 26/168 (15%), Positives = 66/168 (39%), Gaps = 9/168 (5%)
Query: 149 RVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISID-QALRRV 207
R+ ++I F P + + + R+ IK+ ++LL + + S ++I Q L +
Sbjct: 183 RLLLYLIIVISSFFIPDIILFTIANIRKEEIKKEELYLINLLAV-IGSNLNITAQGLMTI 241
Query: 208 AEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTS 267
+ PL E+ ++++ NR A+ F + L Q +
Sbjct: 242 LTNNAKYLKPLLEKF-----QMAYYMNRDEAYNLFMLDKDKQAINKIITLLRQIEDSNKE 296
Query: 268 IGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVII 315
+ L + + + + + K + +++F + ++L+++
Sbjct: 297 LA--LNNIKKYNENIDKIRKLEYQNKIENKEGLILLLFTIGTVLLMML 342
>gi|291525763|emb|CBK91350.1| hypothetical protein EUR_23620 [Eubacterium rectale DSM 17629]
Length = 309
Score = 41.8 bits (97), Expect = 0.16, Method: Composition-based stats.
Identities = 31/193 (16%), Positives = 73/193 (37%), Gaps = 10/193 (5%)
Query: 127 FLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGF-CAPSVWISNLVQKRQSSIKRAWPD 185
F L + + + L ++ + VGF P +I + +
Sbjct: 78 FPFLCTVSLVLFAVGAAGAAMLGNFFLVPVAAVGFMFLPFWYIKLTASHFKKDVSAELET 137
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFL-PNRQVAFENFYN 244
AL ++ + + L V E++ + P+ ++ + + P+ + A +
Sbjct: 138 ALSIITTAY---LRSEDILTSVEENLEYLNPPVKNIFQDFVSRIRLINPDLEAALDELRA 194
Query: 245 RTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPK----LTV 300
R D + AL + Y S+ +L +V++ R++ AE + + P+ V
Sbjct: 195 RIADDVFKEWVDALK-ACLYDRSLKTTLTPIVAKLSDMRIVNAELEYMVMEPRKEFITMV 253
Query: 301 PMIIFFLPVLILV 313
+++ +P+L +
Sbjct: 254 VLVVGNIPLLYFL 266
>gi|206580419|ref|YP_002240423.1| protein transport protein HofC [Klebsiella pneumoniae 342]
gi|206569477|gb|ACI11253.1| protein transport protein HofC [Klebsiella pneumoniae 342]
Length = 401
Score = 41.8 bits (97), Expect = 0.16, Method: Composition-based stats.
Identities = 24/148 (16%), Positives = 49/148 (33%), Gaps = 10/148 (6%)
Query: 181 RAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFE 240
+ +L + +GIS Q L+ V + + + ++ A
Sbjct: 261 QQLSLIFTILALTQSAGISFLQGLQSV--EATLSCPLWRQRLAQARTLIAQGEPIWQAL- 317
Query: 241 NFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV 300
+R LI++ ++ L L R + A+ AA L P + V
Sbjct: 318 ---SRCG--GFTPLCLQLIRTGESAGALDQMLENLAHHHREQTHQRADSLAAHLEPIMLV 372
Query: 301 PMIIFFLPVLILVIIGPAILSIIDTMKD 328
I L +++V + + + D +
Sbjct: 373 --ITGSLVGILVVAMYLPVFHLGDAIGG 398
>gi|294499495|ref|YP_003563195.1| hypothetical protein BMQ_2739 [Bacillus megaterium QM B1551]
gi|294349432|gb|ADE69761.1| conserved hypothetical protein [Bacillus megaterium QM B1551]
Length = 392
Score = 41.8 bits (97), Expect = 0.16, Method: Composition-based stats.
Identities = 13/79 (16%), Positives = 28/79 (35%), Gaps = 1/79 (1%)
Query: 106 GFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPS 165
G+RS+ S + + + I+ IL + + L + I+ +G P
Sbjct: 84 GYRSQTSWKMFMASTIYTLILLFILHALLPAATHNFIMELASLVLFLSIIGLLIGLIKPK 143
Query: 166 VWI-SNLVQKRQSSIKRAW 183
+ V+ R+ +
Sbjct: 144 WVLPKFKVKTRKRVLFSYL 162
>gi|291562875|emb|CBL41691.1| Type II secretory pathway, component PulF [butyrate-producing
bacterium SS3/4]
Length = 346
Score = 41.4 bits (96), Expect = 0.17, Method: Composition-based stats.
Identities = 30/147 (20%), Positives = 54/147 (36%), Gaps = 16/147 (10%)
Query: 173 QKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSF- 231
+KR+ + + VESG+SI + L + +D E L +L
Sbjct: 2 KKRKKLGAERLSEFFRQFSVLVESGLSIPETLEIMQQDDTD------REFCLACRKLGAF 55
Query: 232 ---LPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAE 288
A E R ++ +I++ + + L E E +
Sbjct: 56 MTEGKTVGDAMEETG-RFPEPAIQ-----MIRAAEMSGQLVRTTARLAVHYEKEHRTEGK 109
Query: 289 KKAASLGPKLTVPMIIFFLPVLILVII 315
++A L PK+ V M+IF + + L I+
Sbjct: 110 IRSAVLYPKILVLMMIFLMLFVFLEIL 136
>gi|313899440|ref|ZP_07832950.1| hypothetical protein HMPREF9406_0504 [Clostridium sp. HGF2]
gi|312955728|gb|EFR37386.1| hypothetical protein HMPREF9406_0504 [Clostridium sp. HGF2]
Length = 230
Score = 41.4 bits (96), Expect = 0.17, Method: Composition-based stats.
Identities = 31/208 (14%), Positives = 75/208 (36%), Gaps = 17/208 (8%)
Query: 114 NILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQ 173
++R + ++G++ + + + + Y G+ P +W+
Sbjct: 25 WRYSLIRFAFMLFMGLIGVLLAV----IKRSSLPVCIVCAVGFTYGGYKLPWLWLRLRHN 80
Query: 174 KRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLP 233
+R I DA+ L + + + I + ++ L ++ I +++
Sbjct: 81 QRCRQIS----DAIILWVNTIYALIGENNIYNAISLSNASAPEILKPDLECFIQQITLDH 136
Query: 234 NRQVAFENFYNRTQMDCVRNATQALIQSDRYG--------TSIGDSLRVLVSETRSERLM 285
+ + A+ NF + ++D R+ L + ++ +L + + R R
Sbjct: 137 SDKDAYLNFLSMYEIDGFRDIMMKLYEYRSLSKDKLKYEIAALTKALSRIERDKRERRYR 196
Query: 286 EAEKKAASLG-PKLTVPMIIFFLPVLIL 312
A +L ++VP + F LIL
Sbjct: 197 SELFTADTLTMIMMSVPCMYMFFVSLIL 224
>gi|78777585|ref|YP_393900.1| type II secretion system protein [Sulfurimonas denitrificans DSM
1251]
gi|78498125|gb|ABB44665.1| type II secretion system protein [Sulfurimonas denitrificans DSM
1251]
Length = 414
Score = 41.4 bits (96), Expect = 0.17, Method: Composition-based stats.
Identities = 25/157 (15%), Positives = 58/157 (36%), Gaps = 10/157 (6%)
Query: 174 KRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLP 233
K++ + + ++ L + +GISI +L +++ L +++
Sbjct: 65 KKRKIEQDSLIASIRQLAVMTNAGISIYDSLNEISK--STTDKTLKLVFKKLSEDINSGH 122
Query: 234 NRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAE-KKAA 292
+ NF + N A++Q I D+L L + R + KKA
Sbjct: 123 SLSKPMNNFRY-----ELGNLCIAMVQLGEKTGKIDDALFSLANMLEDVRANIIKFKKAM 177
Query: 293 SLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMKDH 329
S + + M + F +++ + P ++ + +
Sbjct: 178 SYPKNVMIAMAVAF--SILISYVVPNFKNMFEKLNTQ 212
>gi|262044851|ref|ZP_06017894.1| protein transporter HofC [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
gi|259037820|gb|EEW39048.1| protein transporter HofC [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
Length = 155
Score = 41.4 bits (96), Expect = 0.17, Method: Composition-based stats.
Identities = 25/148 (16%), Positives = 49/148 (33%), Gaps = 10/148 (6%)
Query: 181 RAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFE 240
+ +L + +GIS Q L+ V + + + A + A
Sbjct: 15 QQLSLIFTILALTQSAGISFLQGLQSV--EESLSCPLWRQRLAQARALIVQGEPIWQAL- 71
Query: 241 NFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV 300
+R LI++ ++ L L R + A+ AA L P + V
Sbjct: 72 ---SRCG--GFTPLCLQLIRTGESAGALDQMLENLAHHHREQTYQRADSLAAHLEPMMLV 126
Query: 301 PMIIFFLPVLILVIIGPAILSIIDTMKD 328
I L +++V + + + D +
Sbjct: 127 --ITGSLVGILVVAMYLPVFHLGDAIGG 152
>gi|148269965|ref|YP_001244425.1| type II secretion system protein [Thermotoga petrophila RKU-1]
gi|170288650|ref|YP_001738888.1| type II secretion system protein [Thermotoga sp. RQ2]
gi|147735509|gb|ABQ46849.1| type II secretion system protein [Thermotoga petrophila RKU-1]
gi|170176153|gb|ACB09205.1| type II secretion system protein [Thermotoga sp. RQ2]
Length = 399
Score = 41.4 bits (96), Expect = 0.18, Method: Composition-based stats.
Identities = 23/134 (17%), Positives = 54/134 (40%), Gaps = 12/134 (8%)
Query: 182 AWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFEN 241
L I + +GI I +AL +A S+ I E++ +
Sbjct: 61 EIATFCRQLSIMISAGIRIKEALNILARQ-----TVFSKRFRKVILEIALSVETGDSLAE 115
Query: 242 FYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVP 301
+ +T + + +++++ G + +L+ S + ++ E K+A + P
Sbjct: 116 AFRKTGVFD--SVLISMLEAGEEGGVLDRTLKRAADFYESMKRLQDEVKSA-----MAYP 168
Query: 302 MIIFFLPVLILVII 315
+ + F V+I+++I
Sbjct: 169 LFVLFFAVVIVLVI 182
>gi|312621919|ref|YP_004023532.1| type ii secretion system f domain [Caldicellulosiruptor
kronotskyensis 2002]
gi|312202386|gb|ADQ45713.1| Type II secretion system F domain [Caldicellulosiruptor
kronotskyensis 2002]
Length = 403
Score = 41.4 bits (96), Expect = 0.18, Method: Composition-based stats.
Identities = 22/156 (14%), Positives = 55/156 (35%), Gaps = 8/156 (5%)
Query: 172 VQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSF 231
VQ R+ + + +GI + AL +AE G+ + + ++
Sbjct: 54 VQLRKKIPIKDLAVFCRQFATMLMAGIPMVSALDVIAEQFKGRY--FGKVLEDIHKKVQS 111
Query: 232 LPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKA 291
A +C + +I++ S+ +L + + E + +
Sbjct: 112 GSMLSRALTEKA-----ECFPSILINMIEAGEMSGSVDQALDRMATHFEKELKLRQKIIN 166
Query: 292 ASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
A + P + + + I L +++ ++ P + I +
Sbjct: 167 ALIYPAIVILVAIGVLIIMLTFVV-PTFVGIFSELN 201
>gi|281412154|ref|YP_003346233.1| Type II secretion system F domain protein [Thermotoga naphthophila
RKU-10]
gi|281373257|gb|ADA66819.1| Type II secretion system F domain protein [Thermotoga naphthophila
RKU-10]
Length = 399
Score = 41.4 bits (96), Expect = 0.18, Method: Composition-based stats.
Identities = 23/134 (17%), Positives = 54/134 (40%), Gaps = 12/134 (8%)
Query: 182 AWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFEN 241
L I + +GI I +AL +A S+ I E++ +
Sbjct: 61 EIATFCRQLSIMISAGIRIKEALNILARQ-----TVFSKRFRKVILEIALSVETGDSLAE 115
Query: 242 FYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVP 301
+ +T + + +++++ G + +L+ S + ++ E K+A + P
Sbjct: 116 AFRKTGVFD--SVLISMLEAGEEGGVLDRTLKRAADFYESMKRLQDEVKSA-----MAYP 168
Query: 302 MIIFFLPVLILVII 315
+ + F V+I+++I
Sbjct: 169 LFVLFFAVVIVLVI 182
>gi|227497416|ref|ZP_03927648.1| possible type II secretion system protein [Actinomyces urogenitalis
DSM 15434]
gi|226833092|gb|EEH65475.1| possible type II secretion system protein [Actinomyces urogenitalis
DSM 15434]
Length = 218
Score = 41.4 bits (96), Expect = 0.19, Method: Composition-based stats.
Identities = 22/122 (18%), Positives = 44/122 (36%), Gaps = 4/122 (3%)
Query: 166 VWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLT 225
+ + + V+ R+ +WP+A+DLL + G+ + +AL +AE L
Sbjct: 28 LALRHGVEVRRRRQVESWPEAVDLLGAALSQGVGLPEALSGLAE---AGPPALRPAFRAF 84
Query: 226 IAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTS-IGDSLRVLVSETRSERL 284
+ A + + + + GT+ + +L L + R ER
Sbjct: 85 ALSYTLSGILDEALDRLDGELDDWVGEHLMALVRLAQETGTAGLATALHELSATLRVERA 144
Query: 285 ME 286
Sbjct: 145 SR 146
>gi|292654784|ref|YP_003534681.1| type IV pilus biogenesis complex membrane subunit [Haloferax
volcanii DS2]
gi|291372968|gb|ADE05195.1| type IV pilus biogenesis complex membrane subunit [Haloferax
volcanii DS2]
Length = 639
Score = 41.4 bits (96), Expect = 0.19, Method: Composition-based stats.
Identities = 31/162 (19%), Positives = 52/162 (32%), Gaps = 14/162 (8%)
Query: 130 LGIIWIFGYDKLLEYPFQLRVGA----VILIGYVGFCAPSVWISNLVQKRQSSIKRAWPD 185
+F + L+ VGA V L GYV + AP + + + R D
Sbjct: 363 ASAAAVFVFSGLVVAGVAAFVGADAVGVALAGYVAYAAPVGLVGVRRARLDDAKDRELKD 422
Query: 186 ALDLLLICVESGISIDQALRRVAED-----IGGQSVPLSEEMLLTIAELSFLPN---RQV 237
+ + V G +A+ RV D + L+ + T S + R
Sbjct: 423 FVHAVSGHVNLGRPFGEAVERVGRDVDLGPLDADVADLALNLRFTAP--SSGTDVNLRTA 480
Query: 238 AFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSET 279
A F +R ++ + G+ G L +E
Sbjct: 481 ALARFVDRVGTPMAEQTIGLVVGALDGGSDTGTVFDTLQTEI 522
>gi|322688314|ref|YP_004208048.1| hypothetical protein BLIF_0123 [Bifidobacterium longum subsp.
infantis 157F]
gi|322690325|ref|YP_004219895.1| hypothetical protein BLLJ_0133 [Bifidobacterium longum subsp.
longum JCM 1217]
gi|320455181|dbj|BAJ65803.1| conserved hypothetical protein [Bifidobacterium longum subsp.
longum JCM 1217]
gi|320459650|dbj|BAJ70270.1| conserved hypothetical protein [Bifidobacterium longum subsp.
infantis 157F]
Length = 98
Score = 41.4 bits (96), Expect = 0.19, Method: Composition-based stats.
Identities = 16/47 (34%), Positives = 24/47 (51%)
Query: 277 SETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSII 323
+ + E+ AA L KL +P + FLP +LV + PAI S +
Sbjct: 51 EQLDRDERAAIERNAAKLSVKLLMPTGLCFLPAFVLVGVIPAIASFM 97
>gi|218290592|ref|ZP_03494694.1| hypothetical protein AaLAA1DRAFT_2280 [Alicyclobacillus
acidocaldarius LAA1]
gi|218239376|gb|EED06573.1| hypothetical protein AaLAA1DRAFT_2280 [Alicyclobacillus
acidocaldarius LAA1]
Length = 286
Score = 41.4 bits (96), Expect = 0.20, Method: Composition-based stats.
Identities = 27/168 (16%), Positives = 56/168 (33%), Gaps = 14/168 (8%)
Query: 126 IFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPD 185
++G + + L F L L V + ++ + + + + A P
Sbjct: 73 GLALVGALLPQVFGDPLWMSFGLAALCACLPFPVFRVLKTRYVWRVEKGLRET---ALPL 129
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSF-LPNRQVAFENFYN 244
L +L + G++I+ LR G+ + E A + + A +
Sbjct: 130 GLSVLEATEDVGLAIEDILRH------GKDPVIQREFEAIRARVKALGLPPEDALVEHAS 183
Query: 245 RTQMDCVRNATQALIQSDRYGTSIG----DSLRVLVSETRSERLMEAE 288
+ + + Q RYG + D L L + + +M A+
Sbjct: 184 ESGIPAFQWLAQYTRTLKRYGANPSTIWRDVLTDLQDQAQFRSMMRAK 231
>gi|261378358|ref|ZP_05982931.1| 3-isopropylmalate dehydrogenase [Neisseria cinerea ATCC 14685]
gi|269145466|gb|EEZ71884.1| 3-isopropylmalate dehydrogenase [Neisseria cinerea ATCC 14685]
Length = 410
Score = 41.4 bits (96), Expect = 0.20, Method: Composition-based stats.
Identities = 24/155 (15%), Positives = 49/155 (31%), Gaps = 15/155 (9%)
Query: 164 PSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEML 223
P ++ + L +++G+ + QA VA G + ++E ++
Sbjct: 53 PLQISRVKTTSKRKITQEDITVFTRQLATMMKAGLPLMQAFEIVAR--GHANPSMTEMLM 110
Query: 224 LTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSER 283
+E+ AF + L+ + G + L L +
Sbjct: 111 EIRSEVEQGTTLSRAFSRYPKYFD-----RFYCNLVSAGEMGGVLESLLDKLAVYKEKTQ 165
Query: 284 LMEAEKKAA--------SLGPKLTVPMIIFFLPVL 310
+ + K A ++ L M+IF LP
Sbjct: 166 SIRKKVKTALTYPISVIAVAIGLVFVMMIFVLPAF 200
>gi|220910052|ref|YP_002485363.1| type II secretion system protein [Cyanothece sp. PCC 7425]
gi|219866663|gb|ACL47002.1| type II secretion system protein [Cyanothece sp. PCC 7425]
Length = 406
Score = 41.4 bits (96), Expect = 0.20, Method: Composition-based stats.
Identities = 20/144 (13%), Positives = 46/144 (31%), Gaps = 8/144 (5%)
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
V +G+++ + L +A+ + + + + ++ A
Sbjct: 70 FSRQFAALVNAGVALVRGLGVMADQC--TNPKMKKVLTSVNNDVQQGTTLSDAMRGHPEA 127
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
N A+IQ+ G + D L L + + + K+A P + +
Sbjct: 128 FD-----NLYVAMIQAGETGGVLDDVLNRLSKLLEDQARLNNQIKSAMAYPVTVGGLAVL 182
Query: 306 FLPVLILVIIGPAILSIIDTMKDH 329
+I+ +I P I +
Sbjct: 183 IFFGMIIFLI-PVFSGIFKQLGGQ 205
>gi|15920738|ref|NP_376407.1| hypothetical protein ST0521 [Sulfolobus tokodaii str. 7]
gi|15621521|dbj|BAB65516.1| 634aa long hypothetical protein [Sulfolobus tokodaii str. 7]
Length = 634
Score = 41.4 bits (96), Expect = 0.20, Method: Composition-based stats.
Identities = 34/211 (16%), Positives = 82/211 (38%), Gaps = 14/211 (6%)
Query: 96 ENIVNKLRAAGFRSE---YSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGA 152
+++ KL+ AG + Y+ + + L + I ++L +IF + L + VG
Sbjct: 44 KSLDKKLKQAGLSDDPRIYASRLFFFLILGIIIGVMLLFAGFIFLREFELTKLSKFAVGG 103
Query: 153 VILIGYVGFCAPSVW-------ISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALR 205
++ I + G P V +S V+ R+ ++ L L+ + SG+S
Sbjct: 104 IMFILF-GVIIPVVTYLVLISNVSQKVESRRIGVEAETLAFSALFLVFLRSGLSPRLLFE 162
Query: 206 RVAEDIGGQSVPLSEEMLLTIAELSF-LPNRQVAFENFYNRTQMDCVRNATQALIQSDRY 264
+++ ++ + ++F + + A + + I + R
Sbjct: 163 NLSKTKAFNY--MNSIAKYIVKRINFLGESVEKAIDESTKIVPSKLYNDLMVTYITAIRT 220
Query: 265 GTSIGDSLRVLVSETRSERLMEAEKKAASLG 295
G + ++++ + + ++A K A +L
Sbjct: 221 GAPVFETMQSKIKDILKNMELQASKAADNLS 251
>gi|296109004|ref|YP_003615953.1| Type II secretion system F domain protein [Methanocaldococcus
infernus ME]
gi|295433818|gb|ADG12989.1| Type II secretion system F domain protein [Methanocaldococcus
infernus ME]
Length = 345
Score = 41.4 bits (96), Expect = 0.20, Method: Composition-based stats.
Identities = 22/141 (15%), Positives = 50/141 (35%), Gaps = 2/141 (1%)
Query: 125 IIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWP 184
++ ++ I IF + +L+ ++ + + + + IK
Sbjct: 118 VLMYVISIFLIFVFLGILDNNIIDGFFKGLIFSVILLAISPFYPRLKLIIFKGEIKLQIL 177
Query: 185 DALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYN 244
L + +++G S+ + L +A + LS E L I +++ + A
Sbjct: 178 LGLLYMTSLLKAGASLPEILTGLAR--SREYGVLSYEAALIIRDINSGMTFEDALRRAII 235
Query: 245 RTQMDCVRNATQALIQSDRYG 265
RT + +R +I G
Sbjct: 236 RTTIPLLRKVFDQMIIGYNKG 256
>gi|126658485|ref|ZP_01729633.1| type II secretion system protein [Cyanothece sp. CCY0110]
gi|126620227|gb|EAZ90948.1| type II secretion system protein [Cyanothece sp. CCY0110]
Length = 404
Score = 41.4 bits (96), Expect = 0.20, Method: Composition-based stats.
Identities = 21/145 (14%), Positives = 50/145 (34%), Gaps = 10/145 (6%)
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
+ + +G++I + L ++E + L + + AE+ + A E
Sbjct: 69 FSRQFSVMINAGVAIVRCLGVLSE--QATNPKLKKALSAISAEVQQGISLSEALEKHP-- 124
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSE-RLMEAEKKAASLGPKLTVPMII 304
C +++++ G + + L L RL K A + TV ++
Sbjct: 125 ---SCFDQLYVSMVEAGETGGVLDEVLNRLAKLLEDMARLQNQIKSAMAYPV--TVGILA 179
Query: 305 FFLPVLILVIIGPAILSIIDTMKDH 329
+ + + + P I + +
Sbjct: 180 VIVFFAMTIFLIPVFAGIFEDLGAE 204
>gi|83589205|ref|YP_429214.1| hypothetical protein Moth_0337 [Moorella thermoacetica ATCC 39073]
gi|83572119|gb|ABC18671.1| hypothetical protein Moth_0337 [Moorella thermoacetica ATCC 39073]
Length = 259
Score = 41.4 bits (96), Expect = 0.20, Method: Composition-based stats.
Identities = 31/206 (15%), Positives = 66/206 (32%), Gaps = 12/206 (5%)
Query: 124 PIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAW 183
++ + G I++ L+ + A+ + +GF A + + + R
Sbjct: 60 ALVPALGGAIFL----GLIAGKMPYALVAIPVGAALGFLASRIAVKLYQSRTHFQRLREA 115
Query: 184 PDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFY 243
+ + + +G + QA+ + + IA S R A E
Sbjct: 116 AVLYESIDLFTRAGFTPRQAMELSLPLLTLLRPAV----ERCIASWSGGALR--AIEQLG 169
Query: 244 NRTQMDCVRNATQALIQSDRYGTS-IGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPM 302
N + L+Q G + + + R E + A+ TV
Sbjct: 170 NDINLKEADVLIAVLMQIVEGGVAKLAGVMEEEALRLDELRQNLGEMRIAAKPVYSTV-Y 228
Query: 303 IIFFLPVLILVIIGPAILSIIDTMKD 328
I + L+ +++GP I + +
Sbjct: 229 IFLPVAALVGMLLGPLAFRAISMISN 254
>gi|45357602|ref|NP_987159.1| hypothetical protein MMP0039 [Methanococcus maripaludis S2]
gi|45047162|emb|CAF29595.1| conserved hypothetical protein [Methanococcus maripaludis S2]
Length = 352
Score = 41.4 bits (96), Expect = 0.21, Method: Composition-based stats.
Identities = 26/163 (15%), Positives = 63/163 (38%), Gaps = 11/163 (6%)
Query: 105 AGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAP 164
AG E + +++ + ++ I I + D + + ++++G + P
Sbjct: 112 AGIVDERVYFLKMMIAAITTVVLFI--IYGVLTGDVFSGVSNGVLLAVIMVVGSI--FYP 167
Query: 165 SVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLL 224
+ ++ + + + + + +L SG S+ ++L+ +A + + S E
Sbjct: 168 KLKLTLFRGEIKIQVLMSILHLISML----NSGASVQESLKNIANN--PEYGITSFEFRS 221
Query: 225 TIAEL-SFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGT 266
I ++ N A E RT++ +R LI + G
Sbjct: 222 IIKDINQGGYNFVEALERAKMRTKIHIMRQLYDQLILAANKGG 264
>gi|225026645|ref|ZP_03715837.1| hypothetical protein EUBHAL_00896 [Eubacterium hallii DSM 3353]
gi|224956015|gb|EEG37224.1| hypothetical protein EUBHAL_00896 [Eubacterium hallii DSM 3353]
Length = 191
Score = 41.4 bits (96), Expect = 0.21, Method: Composition-based stats.
Identities = 19/123 (15%), Positives = 50/123 (40%), Gaps = 5/123 (4%)
Query: 180 KRAWPDALDLLLICVESGISIDQALRRVAEDIG----GQSVPLSEEMLLTIAELSFLPNR 235
++ + + L ++ +++G S++ + R +++ Q+ P+ +M I L
Sbjct: 46 EKGFQNLLQSMMTSLQAGYSLNNSCRIALKELEELYQDQNNPMLRQMRRIIQGLDLHIAL 105
Query: 236 QVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLG 295
+ F F T ++ + + G ++ + L+ + + + E E + L
Sbjct: 106 EQLFMEFAESTGLEEAKQFAVVIEIVRSTGGNMVEILKRTMQHLKYKMDTEEEIRVL-LS 164
Query: 296 PKL 298
KL
Sbjct: 165 GKL 167
>gi|254447703|ref|ZP_05061169.1| general secretion pathway protein F [gamma proteobacterium
HTCC5015]
gi|198263046|gb|EDY87325.1| general secretion pathway protein F [gamma proteobacterium
HTCC5015]
Length = 383
Score = 41.4 bits (96), Expect = 0.21, Method: Composition-based stats.
Identities = 20/114 (17%), Positives = 43/114 (37%), Gaps = 9/114 (7%)
Query: 176 QSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNR 235
+ +++WP + L +G+ + +A+ ++++ + V ++ + +LS
Sbjct: 52 RRQWRQSWPLVVRQLRQLSAAGVPLAEAMDALSQE--AEPVAWAQLLQDLARDLSAGQRL 109
Query: 236 QVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVS--ETRSERLMEA 287
A F + LIQ+ ++ L L E R R EA
Sbjct: 110 SQALARFEEHLPEPSMS-----LIQAGENSGTLERQLDTLAQILEWREARRSEA 158
>gi|330011992|ref|ZP_08307209.1| bacterial type II secretion system protein F domain protein
[Klebsiella sp. MS 92-3]
gi|328533981|gb|EGF60633.1| bacterial type II secretion system protein F domain protein
[Klebsiella sp. MS 92-3]
Length = 163
Score = 41.4 bits (96), Expect = 0.21, Method: Composition-based stats.
Identities = 25/148 (16%), Positives = 49/148 (33%), Gaps = 10/148 (6%)
Query: 181 RAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFE 240
+ +L + +GIS Q L+ V + + + A + A
Sbjct: 23 QQLSLIFTILALTQSAGISFLQGLQSV--EESLSCPLWRQRLAQARALIVQGEPIWQAL- 79
Query: 241 NFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV 300
+R LI++ ++ L L R + A+ AA L P + V
Sbjct: 80 ---SRCG--GFTPLCLQLIRTGESAGALDQMLENLAHHHREQTYQRADSLAAHLEPMMLV 134
Query: 301 PMIIFFLPVLILVIIGPAILSIIDTMKD 328
I L +++V + + + D +
Sbjct: 135 --ITGSLVGILVVAMYLPVFHLGDAIGG 160
>gi|302872319|ref|YP_003840955.1| Type II secretion system F domain [Caldicellulosiruptor obsidiansis
OB47]
gi|302575178|gb|ADL42969.1| Type II secretion system F domain [Caldicellulosiruptor obsidiansis
OB47]
Length = 403
Score = 41.4 bits (96), Expect = 0.21, Method: Composition-based stats.
Identities = 21/156 (13%), Positives = 53/156 (33%), Gaps = 8/156 (5%)
Query: 172 VQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSF 231
VQ R+ + + +GI + AL +AE G+ + + ++
Sbjct: 54 VQLRKKIPIKDLAVFCRQFATMLMAGIPMVSALDVIAEQFKGRY--FGKVLEDIHKKVQS 111
Query: 232 LPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKA 291
A + +I++ S+ +L + + E + +
Sbjct: 112 GSMLSRALAEKAECFPTILIN-----MIEAGEMSGSVDQALDRMATHFEKELKLRQKIIN 166
Query: 292 ASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
A + P + + + I L +++ ++ P + I +
Sbjct: 167 ALIYPAIVILVAIGVLIIMLTFVV-PTFVGIFSELN 201
>gi|320161546|ref|YP_004174770.1| hypothetical protein ANT_21440 [Anaerolinea thermophila UNI-1]
gi|319995399|dbj|BAJ64170.1| hypothetical membrane protein [Anaerolinea thermophila UNI-1]
Length = 288
Score = 41.4 bits (96), Expect = 0.21, Method: Composition-based stats.
Identities = 37/256 (14%), Positives = 87/256 (33%), Gaps = 14/256 (5%)
Query: 74 TRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGII 133
+S + + + +L + + LR A R L L + ++F G++
Sbjct: 41 QTPKQSRQEAIGEAVAGRLLSLKTWEDHLRWA-QRGGQYLGQSLGGVVFQSLLFAGAGLL 99
Query: 134 WIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLIC 193
+ L +L+ + F P V + + + + R P+ L+
Sbjct: 100 VVMVNPAPLS----------LLVPVMAFAYPLVRLRSKANTVRKRVFRTLPETAALIAAE 149
Query: 194 VESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQV---AFENFYNRTQMDC 250
+ +G + D A+ R A G S L E + + L +R+ + +
Sbjct: 150 LAAGTAPDVAVARAAAIPGPLSALLKEAVEQSRQTGRPLFSRKPIGGTLVEVMGHSGIPA 209
Query: 251 VRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVL 310
+ L G + + + E + + L +LT+ + +FF
Sbjct: 210 LHAFGSQLDLVASKGVAGAALMSEIARALGQEYRARLQSEVEKLDSRLTLVVALFFFVPF 269
Query: 311 ILVIIGPAILSIIDTM 326
+ +++ ++ ++
Sbjct: 270 VGLLLFASLRPVLQIF 285
>gi|315926213|ref|ZP_07922412.1| type IV pilus assembly protein [Pseudoramibacter alactolyticus ATCC
23263]
gi|315620473|gb|EFV00455.1| type IV pilus assembly protein [Pseudoramibacter alactolyticus ATCC
23263]
Length = 362
Score = 41.0 bits (95), Expect = 0.22, Method: Composition-based stats.
Identities = 28/179 (15%), Positives = 56/179 (31%), Gaps = 32/179 (17%)
Query: 115 ILLVVRLVVPIIFLIL---------GIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPS 165
+VR V+P++ L G + + L + + ++ P
Sbjct: 139 THYLVRTVMPVLLDSLTSMDRSVPPGSRLLITLSRGLSWGLPAAMLLLLFGVLFARTLPQ 198
Query: 166 VWISNLVQKRQSSIKRAWPD------------ALDLLLICVESGISIDQALRRVAEDIGG 213
N +++R + P D L + V SG+++ AL+ V +++
Sbjct: 199 ---GNALRQRLHRLALHLPLIGRLFYLRSMEIFADSLAMMVRSGVALIPALQIVCQNLQN 255
Query: 214 QSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSL 272
L + T A + + + R + LIQ S+ L
Sbjct: 256 DF--LRARLSRTAALIESGMSLTESL----ERIDVLDAEFF--QLIQVGESAGSLAQVL 306
>gi|297572241|ref|YP_003698015.1| type II secretion system protein [Arcanobacterium haemolyticum DSM
20595]
gi|296932588|gb|ADH93396.1| type II secretion system protein [Arcanobacterium haemolyticum DSM
20595]
Length = 175
Score = 41.0 bits (95), Expect = 0.22, Method: Composition-based stats.
Identities = 28/129 (21%), Positives = 55/129 (42%), Gaps = 10/129 (7%)
Query: 195 ESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELS----FLPNRQVAFENFYNRTQMDC 250
SG S+ LR +A + G +V +S ++E++ A+ +D
Sbjct: 45 MSGASLPVVLRHLAGALDGLTVGVSSSPSAKLSEVANMLVMGATWDEAW------VGVDG 98
Query: 251 VRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVL 310
+AL + G + L+ R ++ A++ AA LG L +P+ + FLP
Sbjct: 99 YDLLARALKPAWVDGVAPVPLLQRAAQTHRLTQVRRAKEAAARLGAALVMPLGLCFLPAF 158
Query: 311 ILVIIGPAI 319
+++ + P +
Sbjct: 159 VILGVVPVV 167
>gi|288937124|ref|YP_003441183.1| type II secretion system F domain protein [Klebsiella variicola
At-22]
gi|288891833|gb|ADC60151.1| Type II secretion system F domain protein [Klebsiella variicola
At-22]
Length = 401
Score = 41.0 bits (95), Expect = 0.22, Method: Composition-based stats.
Identities = 25/148 (16%), Positives = 49/148 (33%), Gaps = 10/148 (6%)
Query: 181 RAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFE 240
+ +L + +GIS Q L+ V + + + ++ A
Sbjct: 261 QQLSLIFTILALTQSAGISFLQGLQSV--EATLSCPLWRQRLAQARTLIAQGEPIWQAL- 317
Query: 241 NFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV 300
+R LI++ ++ L L R + A+ AA L P + V
Sbjct: 318 ---SRCG--GFTPLCLQLIRTGESAGALDQMLENLAHHHREQTHQRADSLAAHLEPIMLV 372
Query: 301 PMIIFFLPVLILVIIGPAILSIIDTMKD 328
I L ++LV + + + D +
Sbjct: 373 --ITGSLVGILLVAMYLPVFHLGDAIGG 398
>gi|147920826|ref|YP_685368.1| putative type II secretion system protein, C-terminal fragment
[uncultured methanogenic archaeon RC-I]
gi|110620764|emb|CAJ36042.1| putative bacterial type II secretion system protein, C-terminal
fragment [uncultured methanogenic archaeon RC-I]
Length = 297
Score = 41.0 bits (95), Expect = 0.22, Method: Composition-based stats.
Identities = 33/192 (17%), Positives = 75/192 (39%), Gaps = 8/192 (4%)
Query: 123 VPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRA 182
+ I L ++ V A +LI +G P+ + S +
Sbjct: 21 MGRILLAATLLGTTAAVAAALLSQPADVIAYVLI--MGTLVPAAIAYGITASYDSEVNTR 78
Query: 183 WPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAEL-SFLPNRQVAFEN 241
P+ L + +G SI +AL+RV+ G +S+EM ++E+ + A +
Sbjct: 79 APELFYDLSEYIGAGGSIIKALKRVS---AGSYGTMSDEMSRVLSEVEDEGLDLAAAMKA 135
Query: 242 FYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVP 301
R + + + ++ + + L+++ ++ R + E+++ L V
Sbjct: 136 MAARVNNAYISRSVAVICEALTSSSDLEGILKMVAADGRLSMSLLKERRSGLLAA--VVV 193
Query: 302 MIIFFLPVLILV 313
M + + +L++V
Sbjct: 194 MYLTTIILLLVV 205
>gi|226303995|ref|YP_002763953.1| hypothetical protein RER_05060 [Rhodococcus erythropolis PR4]
gi|226183110|dbj|BAH31214.1| conserved hypothetical protein [Rhodococcus erythropolis PR4]
Length = 194
Score = 41.0 bits (95), Expect = 0.22, Method: Composition-based stats.
Identities = 29/140 (20%), Positives = 58/140 (41%), Gaps = 6/140 (4%)
Query: 187 LDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRT 246
LDLL C+ +G+ + A+ +A P+++ + L+ + A+
Sbjct: 55 LDLLGACLRAGLPVSAAITAMAS---TAPKPMADTLSRVADLLTLGADPDAAWSEAAL-- 109
Query: 247 QMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFF 306
+ +S R G+S+ S+ L +R + A A G ++ P+ + F
Sbjct: 110 -DPDTEALARMARRSARSGSSLSSSMAELAERSRGDAEDLAAAAAERAGVLISGPLGLCF 168
Query: 307 LPVLILVIIGPAILSIIDTM 326
LP I + I P ++ + T+
Sbjct: 169 LPAFIALGIVPVVIGLATTV 188
>gi|167746591|ref|ZP_02418718.1| hypothetical protein ANACAC_01301 [Anaerostipes caccae DSM 14662]
gi|167653551|gb|EDR97680.1| hypothetical protein ANACAC_01301 [Anaerostipes caccae DSM 14662]
Length = 401
Score = 41.0 bits (95), Expect = 0.23, Method: Composition-based stats.
Identities = 27/158 (17%), Positives = 57/158 (36%), Gaps = 7/158 (4%)
Query: 171 LVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELS 230
++ ++ D L +++G+S+ ++L +A +IG +S E + +
Sbjct: 49 KLKSKRKMKASVLADFCRQLGTLLKAGVSLVRSLNIIANEIGVRSTD-KETYQNLLNSIR 107
Query: 231 FLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKK 290
A + + + ++ G SLR+ + RL +
Sbjct: 108 QGIPLSEAMDEQGRTFPV----LLVSMMRSAEANGNLDQTSLRMAEHYEKENRLNGKVRN 163
Query: 291 AASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMKD 328
A L+V ++ + IL + P I DTM+
Sbjct: 164 AMIYPIVLSVLLVGVI--IFILSYLVPQFQDIFDTMES 199
Score = 37.9 bits (87), Expect = 2.2, Method: Composition-based stats.
Identities = 34/179 (18%), Positives = 66/179 (36%), Gaps = 15/179 (8%)
Query: 144 YPFQLRVGAVILIGYVGFC-APSV-WISNLVQKRQSSIKRAW-----PDALDLLLICVES 196
+PF L + A ++ G P V W + ++ R I + L S
Sbjct: 218 WPFILLILAAVIFGIRLILRIPKVRWKKDQLKLRLPVIGKLLRKIYTARFARTLCSLYSS 277
Query: 197 GISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQ 256
GI I QA++ + +G + + E+ + + + V+ ++D +
Sbjct: 278 GIPIIQAMQIGSSTVGNRYIE--EQFGQAVDSIRRGESLSVSL------MEIDGFQKKLS 329
Query: 257 ALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVII 315
+ IQ S+ + L + E E+ L P L + M + V++ VI+
Sbjct: 330 SAIQVGEETGSLDEMLDSIAESLEFEAERALERLVTLLEPVLIILMAVIIGFVVVAVIL 388
>gi|171186313|ref|YP_001795232.1| type II secretion system protein [Thermoproteus neutrophilus
V24Sta]
gi|170935525|gb|ACB40786.1| type II secretion system protein [Thermoproteus neutrophilus
V24Sta]
Length = 248
Score = 41.0 bits (95), Expect = 0.23, Method: Composition-based stats.
Identities = 18/104 (17%), Positives = 38/104 (36%), Gaps = 6/104 (5%)
Query: 178 SIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEML--LTIAELSFLPNR 235
++ P L +L V +G+S+ A+ A P+++ + LT++E+
Sbjct: 30 RLEGQIPQVLRVLSDAVSAGLSLRGAVESAA---ALALRPMADVLRHVLTLSEM-GGLTV 85
Query: 236 QVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSET 279
+ A R + ++ R G + + L V
Sbjct: 86 EEALWRVAGEIPSPNFRRFALIVTEATRSGAKLPEVLDVSARSF 129
>gi|315605668|ref|ZP_07880701.1| conserved hypothetical protein [Actinomyces sp. oral taxon 180 str.
F0310]
gi|315312623|gb|EFU60707.1| conserved hypothetical protein [Actinomyces sp. oral taxon 180 str.
F0310]
Length = 425
Score = 41.0 bits (95), Expect = 0.23, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 27/44 (61%)
Query: 280 RSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSII 323
R RL +A+ KA LG +L P+ +FFLP + + IGP + ++
Sbjct: 377 RRMRLADAKTKAEELGVRLVAPLGLFFLPAFLALGIGPLLAYLM 420
>gi|302387861|ref|YP_003823683.1| hypothetical protein Closa_3535 [Clostridium saccharolyticum WM1]
gi|302198489|gb|ADL06060.1| conserved hypothetical protein [Clostridium saccharolyticum WM1]
Length = 291
Score = 41.0 bits (95), Expect = 0.23, Method: Composition-based stats.
Identities = 31/169 (18%), Positives = 63/169 (37%), Gaps = 7/169 (4%)
Query: 130 LGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDL 189
G+I+ LL P V +I I + S L+ R+ I+ P +
Sbjct: 99 AGLIFSGVIPCLLFLPILSPVFVIIGIAV--YFTESTKAEKLITARRQDIEYELPRFVST 156
Query: 190 LLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMD 249
L+ +++ + L ++ G + E+ +T +++ N + A F R
Sbjct: 157 LVQELKASRDVLSILEHYQKNAG---KAMKNELAITTSDMRTG-NYEGALARFEARVSSA 212
Query: 250 CVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKL 298
+ + + LI R G ++L + + L ++ A PK+
Sbjct: 213 MLSDIVRGLIGVLR-GDDGVVFFQMLSHDLKQLELQRLKRLAMERPPKI 260
>gi|288870459|ref|ZP_06114166.2| conserved hypothetical protein [Clostridium hathewayi DSM 13479]
gi|288867074|gb|EFC99372.1| conserved hypothetical protein [Clostridium hathewayi DSM 13479]
Length = 276
Score = 41.0 bits (95), Expect = 0.24, Method: Composition-based stats.
Identities = 29/198 (14%), Positives = 69/198 (34%), Gaps = 8/198 (4%)
Query: 131 GIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLL 190
G+++ L P ++ IG + V+ + +I+ P + +
Sbjct: 85 GLVFFGALPCLAVIPILAPAFLIMGIGVLFSETGKA--EKTVRDSREAIEYELPRFVATI 142
Query: 191 LICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDC 250
+ + + L + G L E+ +T A++ + + A +R
Sbjct: 143 TQELLASRDVLSMLETYQKHAG---PALKRELSVTTADMRTG-SYEAALTRMESRVSSAM 198
Query: 251 VRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVL 310
V + + LI R + +++ + + + +K A PK+ L +
Sbjct: 199 VSDVVRGLIGVIRGDDGVA-YFQMMGHDMKQLEIQRLKKLALERPPKIRR-YSFLLLACM 256
Query: 311 ILVIIGPAILSIIDTMKD 328
+++ +G I+ TM
Sbjct: 257 LMIYMGVMAYQILGTMSG 274
>gi|227497417|ref|ZP_03927649.1| hypothetical protein HMPREF0058_1641 [Actinomyces urogenitalis DSM
15434]
gi|226833093|gb|EEH65476.1| hypothetical protein HMPREF0058_1641 [Actinomyces urogenitalis DSM
15434]
Length = 231
Score = 41.0 bits (95), Expect = 0.25, Method: Composition-based stats.
Identities = 29/159 (18%), Positives = 60/159 (37%), Gaps = 25/159 (15%)
Query: 175 RQSSIKRAWPDALDLLLICVESG-ISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLP 233
R+ I+ + P+ALD+L + V++G + A R + EL+ +
Sbjct: 78 RRRQIEASLPEALDVLALAVDTGWQPVQGAERLMVSTFNAAF----------AHELAGIL 127
Query: 234 NRQVA--FENFYNRTQMD-----CVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLME 286
A +R + V +A + + G + LR ++ R R +
Sbjct: 128 PPDGAPLIPELVSRLGAEPGASAQVLRLQRAFVSAPEGGEVLSGLLRAQAADLRERRRQQ 187
Query: 287 AEKKA-------ASLGPKLTVPMIIFFLPVLILVIIGPA 318
++ A+L + VP+++ VL+ ++ P
Sbjct: 188 LARRVGCRLAFQAALVLLIQVPVMVVAFAVLVRALLEPG 226
>gi|237733196|ref|ZP_04563677.1| predicted protein [Mollicutes bacterium D7]
gi|229383740|gb|EEO33831.1| predicted protein [Coprobacillus sp. D7]
Length = 413
Score = 41.0 bits (95), Expect = 0.26, Method: Composition-based stats.
Identities = 39/208 (18%), Positives = 90/208 (43%), Gaps = 22/208 (10%)
Query: 119 VRLVVPIIFLILGIIWIFGYDKLLEY-----PFQLRVGAVILIGYVGFCAPSVWISNLVQ 173
++ + I + GI+ + G LL + L + A ++I Y + I ++ +
Sbjct: 202 LKKSLYIFLGLAGIVAVIGVANLLLNLHLAINYPLFIIASVIISYGIYKIDYFMIKSVFK 261
Query: 174 KRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLP 233
+Q S+K A+P + L + + + +I LR+ + P+ +++ IA L P
Sbjct: 262 NQQKSVKDAFPLWMSTLEVLIVTN-NIPNTLRK---SLPSCPKPIVKDLERFIARLDVNP 317
Query: 234 NRQVAFENFYNRTQMDCVRNATQALIQ---------SDRYGTSIGDSLRVLVSETRSERL 284
+ A+++F ++ + ++ L Q S + ++ L + S+TR R
Sbjct: 318 VDKEAYKDFLSQYNIPEIQEIVLDLYQFNFVDKNNISTEF-AALHKRLNRISSDTRKRRQ 376
Query: 285 MEAEKKAASLGPKLTVPMIIFFLPVLIL 312
+L ++P+++ L +L++
Sbjct: 377 ESDTFLIGALN---SLPLMVVSLYILMI 401
>gi|226349291|ref|YP_002776405.1| hypothetical membrane protein [Rhodococcus opacus B4]
gi|226245206|dbj|BAH55553.1| hypothetical membrane protein [Rhodococcus opacus B4]
Length = 291
Score = 41.0 bits (95), Expect = 0.26, Method: Composition-based stats.
Identities = 37/195 (18%), Positives = 64/195 (32%), Gaps = 18/195 (9%)
Query: 126 IFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPD 185
I L++G L + F L + +L+G P + ++Q S A +
Sbjct: 51 ILLVVGFAAGIVVSSLSGWLFTLFLVPALLVG-----LP-YLLGRPEAEQQISRLAAMDE 104
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVP-LSEEMLLTIAELSFLPNRQVAFENFYN 244
L +++G I+ + I L EE+ I+ L A F +
Sbjct: 105 WARNLSSSMKAGSGIEHTI------ISTPIPEALREEITAFISRLRNNVPPVDAITRFAS 158
Query: 245 RTQMDCVRNATQALIQSDRY-GTSIGDSLRVLVSE----TRSERLMEAEKKAASLGPKLT 299
AL+ S + G + L L + R EA++K++ K
Sbjct: 159 DLNDSVGDKICGALLLSMQLRGVGLAAVLEGLAEDVGDMVARRRRTEADRKSSRTQAKWV 218
Query: 300 VPMIIFFLPVLILVI 314
+ I L L
Sbjct: 219 TIIAITTLAAAFLFT 233
>gi|15668961|ref|NP_247765.1| hypothetical protein MJ_0780 [Methanocaldococcus jannaschii DSM
2661]
gi|2833585|sp|Q58190|Y780_METJA RecName: Full=Uncharacterized protein MJ0780
gi|1499600|gb|AAB98779.1| hypothetical protein MJ_0780 [Methanocaldococcus jannaschii DSM
2661]
Length = 335
Score = 41.0 bits (95), Expect = 0.26, Method: Composition-based stats.
Identities = 27/168 (16%), Positives = 64/168 (38%), Gaps = 11/168 (6%)
Query: 99 VNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGY 158
N+LR G + E + ++V+ +I L ++++ D L F + +I
Sbjct: 89 RNELRYMGVKDEVA----YFKKVVIYMIITFLALLFMGLLDNNLLQGFVNGLIGAGIILV 144
Query: 159 VGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPL 218
+ P + + + + I + +L +G S+ + L +++ + +
Sbjct: 145 LSLFYPKIRLILFKGEIKLQILFTLIYMISIL----RAGASLPEVLESISK--SREYGVV 198
Query: 219 SEEMLLTIAELSFLP-NRQVAFENFYNRTQMDCVRNATQALIQSDRYG 265
+ E I +++ N A E RT++ ++ +I G
Sbjct: 199 AFEAKSIIRDVNIGGYNLVEALERAKMRTRIPILKKLYDQMIVGYNKG 246
>gi|238893085|ref|YP_002917819.1| type IV pilin biogenesis protein [Klebsiella pneumoniae NTUH-K2044]
gi|238545401|dbj|BAH61752.1| type IV pilin biogenesis transmembrane protein [Klebsiella
pneumoniae subsp. pneumoniae NTUH-K2044]
Length = 401
Score = 41.0 bits (95), Expect = 0.27, Method: Composition-based stats.
Identities = 25/148 (16%), Positives = 49/148 (33%), Gaps = 10/148 (6%)
Query: 181 RAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFE 240
+ +L + +GIS Q L+ V + + + A + A
Sbjct: 261 QQLSLIFTILALTQSAGISFLQGLQSV--EESLSCPLWRQRLAQARALIVQGEPIWQAL- 317
Query: 241 NFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV 300
+R LI++ ++ L L R + A+ AA L P + V
Sbjct: 318 ---SRCG--GFTPLCLQLIRTGESAGALDQMLENLAHHHRQQTYQRADSLAAHLEPMMLV 372
Query: 301 PMIIFFLPVLILVIIGPAILSIIDTMKD 328
I L +++V + + + D +
Sbjct: 373 --ITGSLVGILVVAMYLPVFHLGDAIGG 398
>gi|152968689|ref|YP_001333798.1| type IV pilin biogenesis protein [Klebsiella pneumoniae subsp.
pneumoniae MGH 78578]
gi|150953538|gb|ABR75568.1| component in type IV pilin biogenesis, transmembrane protein
[Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
Length = 401
Score = 41.0 bits (95), Expect = 0.27, Method: Composition-based stats.
Identities = 25/148 (16%), Positives = 49/148 (33%), Gaps = 10/148 (6%)
Query: 181 RAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFE 240
+ +L + +GIS Q L+ V + + + A + A
Sbjct: 261 QQLSLIFTILALTQSAGISFLQGLQSV--EESLSCPLWRQRLAQARALIVQGEPIWQAL- 317
Query: 241 NFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV 300
+R LI++ ++ L L R + A+ AA L P + V
Sbjct: 318 ---SRCG--GFTPLCLQLIRTGESAGALDQMLENLAHHHRQQTYQRADSLAAHLEPMMLV 372
Query: 301 PMIIFFLPVLILVIIGPAILSIIDTMKD 328
I L +++V + + + D +
Sbjct: 373 --ITGSLVGILVVAMYLPVFHLGDAIGG 398
>gi|172035334|ref|YP_001801835.1| pilin biogenesis protein [Cyanothece sp. ATCC 51142]
gi|171696788|gb|ACB49769.1| pilin biogenesis protein [Cyanothece sp. ATCC 51142]
Length = 404
Score = 41.0 bits (95), Expect = 0.27, Method: Composition-based stats.
Identities = 22/145 (15%), Positives = 51/145 (35%), Gaps = 10/145 (6%)
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
+ + +G++I + L +A+ + L + +L AE+ + A
Sbjct: 69 FSRQFSVMINAGVAIVRCLGVLAD--QATNPKLKKALLAISAEVQQGVSLSEALGK---- 122
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSE-RLMEAEKKAASLGPKLTVPMII 304
DC +++++ G + + L L RL K A + TV ++
Sbjct: 123 -HEDCFDQLYVSMVEAGETGGVLDEVLNRLAKLLEDMARLQNQIKSAMAYPV--TVGILA 179
Query: 305 FFLPVLILVIIGPAILSIIDTMKDH 329
+ + + + P I + +
Sbjct: 180 VIVFFAMTIFLIPVFAGIFEDLGAE 204
>gi|148272481|ref|YP_001222042.1| putative pilus assembly protein [Clavibacter michiganensis subsp.
michiganensis NCPPB 382]
gi|147830411|emb|CAN01346.1| conserved membrane protein, putative pilus assembly protein
[Clavibacter michiganensis subsp. michiganensis NCPPB
382]
Length = 287
Score = 41.0 bits (95), Expect = 0.28, Method: Composition-based stats.
Identities = 33/197 (16%), Positives = 68/197 (34%), Gaps = 17/197 (8%)
Query: 96 ENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVIL 155
++ + L AG ++ S++ L V ++ L G++ G +
Sbjct: 37 SSVHDHLTHAGL-AQVSVSSFLA---VSGLVGLAAGVLVEALLRVDGAALAAAATGLL-- 90
Query: 156 IGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQS 215
P + R+ + + WPD +D L+ V +G+ + A+ +A
Sbjct: 91 -------LPWAVVGARSAARRRAHREVWPDVVDHLVSAVRAGMGLPDAVASLAVAGPAVL 143
Query: 216 VPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTS-IGDSLRV 274
P + + VA + ++ + L + G + + D LR
Sbjct: 144 RPAFRDFASVH---RTTGSFAVALDELKDQLADPTADRILETLRMAREVGGTQLPDVLRG 200
Query: 275 LVSETRSERLMEAEKKA 291
L R E + +E +A
Sbjct: 201 LARFLREEAAIRSEAEA 217
>gi|83590395|ref|YP_430404.1| type II secretion system protein [Moorella thermoacetica ATCC
39073]
gi|83573309|gb|ABC19861.1| type II secretion system protein [Moorella thermoacetica ATCC
39073]
Length = 402
Score = 41.0 bits (95), Expect = 0.28, Method: Composition-based stats.
Identities = 29/164 (17%), Positives = 62/164 (37%), Gaps = 16/164 (9%)
Query: 168 ISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIA 227
+ R+ +R L + +G+ I ALR + + + L E + + +
Sbjct: 50 LDWRGLFRRPVSRRDLALFCRQLATMLGAGLPIMSALRVLQRQVE--NPSLRESIGVLLQ 107
Query: 228 ELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEA 287
+L A R V + ++ G ++ ++L L ER E
Sbjct: 108 DLESGEAFYRALGR-QPRVYPPIVIHTV----EAGELGGALDETLERLAGHL--EREHEV 160
Query: 288 EKKAASLGPKLTVPMIIFFLPV----LILVIIGPAILSIIDTMK 327
E+K S LT P ++ + V +L + P+ ++++++
Sbjct: 161 EEKVKSA---LTYPAVVSLVAVGAVIFLLTYVLPSFQVMLNSLQ 201
>gi|298370054|ref|ZP_06981370.1| type IV pilin biogenesis protein PilC [Neisseria sp. oral taxon 014
str. F0314]
gi|298281514|gb|EFI23003.1| type IV pilin biogenesis protein PilC [Neisseria sp. oral taxon 014
str. F0314]
Length = 413
Score = 41.0 bits (95), Expect = 0.28, Method: Composition-based stats.
Identities = 22/152 (14%), Positives = 51/152 (33%), Gaps = 16/152 (10%)
Query: 168 ISNLVQKRQSSIKRA-WPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTI 226
+S + R+ I + L +++G+ + QA VA G + +++ ++
Sbjct: 59 VSKVKSTRKKRITQEDITVFTRQLATMMKAGLPLMQAFEIVAR--GHSNPSMTQMLMQVR 116
Query: 227 AELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLME 286
A++ +F + L+ + G + L L + ++
Sbjct: 117 ADVEQGSALGKSFSKYPKYFD-----RFYCNLVSAGETGGVLEGLLDKLAVYKEKTQAIK 171
Query: 287 AEKK--------AASLGPKLTVPMIIFFLPVL 310
+ K + L M++F LP
Sbjct: 172 KKVKTALTYPIAIMVVAVALIFVMMMFVLPAF 203
>gi|222478632|ref|YP_002564869.1| hypothetical protein Hlac_0194 [Halorubrum lacusprofundi ATCC
49239]
gi|222451534|gb|ACM55799.1| conserved hypothetical protein [Halorubrum lacusprofundi ATCC
49239]
Length = 608
Score = 40.6 bits (94), Expect = 0.29, Method: Composition-based stats.
Identities = 37/182 (20%), Positives = 65/182 (35%), Gaps = 9/182 (4%)
Query: 123 VPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRA 182
+ L G I + + G + G F A V +++R+
Sbjct: 296 AAVAGLGTGAIAAVVTARFVSGWAAPVAGVGVGAGVALFVAVHR--RRAVLSNVRAVERS 353
Query: 183 WPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFEN- 241
PDA+ ++ V G++++ A+ E + G + L E L + + AF
Sbjct: 354 LPDAMTVIGGDVAEGVAVETAIANAGERLDGATGELFERAGRRSDTLR--VDVREAFLGR 411
Query: 242 --FYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLME--AEKKAASLGPK 297
V+ A L + R G GD L L + R +E A ++ A++
Sbjct: 412 GGPAVPVPSPRVQGAVALLAVAGREGRPAGDVLLELADQLEELRELENDARRQLATVTGT 471
Query: 298 LT 299
LT
Sbjct: 472 LT 473
>gi|258510601|ref|YP_003184035.1| hypothetical protein Aaci_0598 [Alicyclobacillus acidocaldarius
subsp. acidocaldarius DSM 446]
gi|257477327|gb|ACV57646.1| hypothetical protein Aaci_0598 [Alicyclobacillus acidocaldarius
subsp. acidocaldarius DSM 446]
Length = 288
Score = 40.6 bits (94), Expect = 0.29, Method: Composition-based stats.
Identities = 33/225 (14%), Positives = 76/225 (33%), Gaps = 22/225 (9%)
Query: 70 SRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFR-SEYSLNILLVVRLVVPIIFL 128
SR TR+ + +L ++ E +L G+ S+ ++ +
Sbjct: 23 SRWETREKRKPFLTEGRLPVQTPSYVERFQAELERWGWSVSKRAIALTWT-------GLA 75
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
++G + + + F L L V + ++ + + + + A P L
Sbjct: 76 LVGALLPQVFGDPIWMSFGLAALCACLPFPVVRVLKTRYVWRVEKGLRET---ALPLGLS 132
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSF-LPNRQVAFENFYNRTQ 247
+L + G++++ LR + + E A ++ + A ++
Sbjct: 133 VLEATEDVGLAVEDILRH------SKDPVIRREFETIRARIAALGVPPEDALVEHAMQSG 186
Query: 248 MDCVRNATQALIQSDRYGTSIG----DSLRVLVSETRSERLMEAE 288
+ + Q RYG + D L L + + +M A+
Sbjct: 187 VPAFQWLAQYTRTLKRYGANPSTIWRDVLTDLQDQAQFRSMMRAK 231
>gi|149177766|ref|ZP_01856366.1| probable type IV pilus assembly protein TapC [Planctomyces maris
DSM 8797]
gi|148843416|gb|EDL57779.1| probable type IV pilus assembly protein TapC [Planctomyces maris
DSM 8797]
Length = 370
Score = 40.6 bits (94), Expect = 0.29, Method: Composition-based stats.
Identities = 22/147 (14%), Positives = 53/147 (36%), Gaps = 16/147 (10%)
Query: 184 PDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFY 243
PD L L I ESG + A ++ ++ LS + ++ + + ++
Sbjct: 237 PDVLRFLHITTESGRPLLGAFETLSH--TTKNPYLSARFNAILEDVHKGNDCWTSLHDYS 294
Query: 244 NRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSE---RLMEAEKKAASLGPKLTV 300
T VR L+QS + ++ +L+ + RL +
Sbjct: 295 LLTPS-EVR-----LLQSAQRAGNLSWALKAIAKGIERRINYRLALIREYLEPA-----F 343
Query: 301 PMIIFFLPVLILVIIGPAILSIIDTMK 327
+ + L + ++ + +++I+ +
Sbjct: 344 ILSVGCLVGIFVIGLFLPLVTIMHALS 370
>gi|266619395|ref|ZP_06112330.1| putative type IV pilus assembly protein PilC [Clostridium hathewayi
DSM 13479]
gi|288869071|gb|EFD01370.1| putative type IV pilus assembly protein PilC [Clostridium hathewayi
DSM 13479]
Length = 415
Score = 40.6 bits (94), Expect = 0.29, Method: Composition-based stats.
Identities = 22/171 (12%), Positives = 56/171 (32%), Gaps = 17/171 (9%)
Query: 162 CAPSVWISNLVQKRQSSIKRAW-PDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSE 220
P + R+ + + + + + SGI + QAL ++ + L E
Sbjct: 57 LYPVKLKEERGRVRKRPLSCGLLARFMSEMAVMLNSGIPLAQALNLIS--VRESRKDLKE 114
Query: 221 EMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETR 280
+ + A E Q ++++ G S+ D+ +
Sbjct: 115 IYGKLYHMILHGMDLSQAME-----MQDGVFPPVLIGMVRAGEAGGSLADAFGKMAEYFE 169
Query: 281 SERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIG----PAILSIIDTMK 327
E +G + P +F ++++++ P+ + ++M+
Sbjct: 170 KEDETRK-----KVGTAMIYPAFLFLTVAVVVILLFTTVLPSFFELFESME 215
>gi|299065626|emb|CBJ36798.1| type IV pilus assembly transmembrane protein [Ralstonia
solanacearum CMR15]
Length = 421
Score = 40.6 bits (94), Expect = 0.29, Method: Composition-based stats.
Identities = 20/150 (13%), Positives = 52/150 (34%), Gaps = 15/150 (10%)
Query: 169 SNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAE 228
+ + + + L +++G+ + Q++ +A G + ++ + +
Sbjct: 70 RRRAARGKKIVPKDIAYFTRQLSTMLKAGVPLLQSVDIIAR--GHANPNFTQLLTEIRVD 127
Query: 229 LSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAE 288
+ + AF + LI + G + L L ++A+
Sbjct: 128 IESGSSMAQAFRRHPQHFD-----SLYCNLIDAGEQGGILDALLERLSMYMEKSIALKAQ 182
Query: 289 KKAA--------SLGPKLTVPMIIFFLPVL 310
K+A ++ +TV ++IF +P
Sbjct: 183 IKSAMIYPISVLTVAFLVTVVLMIFVVPAF 212
>gi|317471422|ref|ZP_07930774.1| type II secretion system protein [Anaerostipes sp. 3_2_56FAA]
gi|316901037|gb|EFV22999.1| type II secretion system protein [Anaerostipes sp. 3_2_56FAA]
Length = 401
Score = 40.6 bits (94), Expect = 0.30, Method: Composition-based stats.
Identities = 27/156 (17%), Positives = 56/156 (35%), Gaps = 7/156 (4%)
Query: 171 LVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELS 230
++ ++ D L +++G+S+ ++L +A +IG +S E + +
Sbjct: 49 KLKSKRKMKASVLADFCRQLGTLLKAGVSLVRSLNIIANEIGVRSTD-KETYQNLLNSIR 107
Query: 231 FLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKK 290
A + + + ++ G SLR+ + RL +
Sbjct: 108 QGIPLSEAMDEQGRTFPV----LLVSMMRSAEANGNLDQTSLRMAEHYEKENRLNGKVRN 163
Query: 291 AASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
A L+V ++ + IL + P I DTM
Sbjct: 164 AMIYPIVLSVLLVGVI--IFILSYLVPQFQDIFDTM 197
Score = 37.9 bits (87), Expect = 2.3, Method: Composition-based stats.
Identities = 34/179 (18%), Positives = 66/179 (36%), Gaps = 15/179 (8%)
Query: 144 YPFQLRVGAVILIGYVGFC-APSV-WISNLVQKRQSSIKRAW-----PDALDLLLICVES 196
+PF L + A ++ G P V W + ++ R I + L S
Sbjct: 218 WPFILLILAAVIFGIRLILRIPKVRWKKDQLKLRLPVIGKLLRKIYTARFARTLCSLYSS 277
Query: 197 GISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQ 256
GI I QA++ + +G + + E+ + + + V+ ++D +
Sbjct: 278 GIPIIQAMQIGSSTVGNRYIE--EQFGQAVDSIRRGESLSVSL------MEIDGFQKKLS 329
Query: 257 ALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVII 315
+ IQ S+ + L + E E+ L P L + M + V++ VI+
Sbjct: 330 SAIQVGEETGSLDEMLDSIAESLEFEAERALERLVTLLEPVLIILMAVIIGFVVVAVIL 388
>gi|152990756|ref|YP_001356478.1| general secretory pathway protein F [Nitratiruptor sp. SB155-2]
gi|151422617|dbj|BAF70121.1| general secretory pathway protein F [Nitratiruptor sp. SB155-2]
Length = 412
Score = 40.6 bits (94), Expect = 0.30, Method: Composition-based stats.
Identities = 28/163 (17%), Positives = 54/163 (33%), Gaps = 11/163 (6%)
Query: 169 SNLVQKRQSSIKRA-WPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIA 227
L+++R+ I R A+ L + +GIS+ AL VA L + L
Sbjct: 58 RFLMEQRKGKINREGLIAAIRQLAVMTNAGISLYDALMEVAT--QTNDAKLKQIFLDVAN 115
Query: 228 ELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEA 287
++ + A + + + + + + + +L L S
Sbjct: 116 GINSGISFSEALKQY-----QNELGSLVITMATLGEKTGDMAHALFTLASILEQINENIK 170
Query: 288 E-KKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMKDH 329
+ KKA + M V+++ + P SI D
Sbjct: 171 KFKKAVRYPIIVLSAMA--IAFVIVISYVVPKFKSIFDKFHAE 211
>gi|150399783|ref|YP_001323550.1| type II secretion system protein [Methanococcus vannielii SB]
gi|150012486|gb|ABR54938.1| type II secretion system protein [Methanococcus vannielii SB]
Length = 298
Score = 40.6 bits (94), Expect = 0.30, Method: Composition-based stats.
Identities = 28/173 (16%), Positives = 73/173 (42%), Gaps = 14/173 (8%)
Query: 114 NILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQ 173
I + + VV ++ ++L II F + + +G+V+ I + + +
Sbjct: 32 RIFIGLIFVVLVLPILLRIIIGFTLQTTIILTL-VYLGSVLAIPSIMY-----------E 79
Query: 174 KRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLP 233
+ P AL ++++ ++SG SI +A+ V + + +++L + E
Sbjct: 80 SKMEKFDSNLPKALYVMVLSLDSGRSIVEAINEVIRSGIPEVDSVFSKIVLLMTEKKL-- 137
Query: 234 NRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLME 286
+ + + N R ++ +I++ +YG + ++L+ L + ++
Sbjct: 138 SFEDSMMLVSNSLDSKLFRQISRLIIENRKYGGELANTLKKLAKTLEDLQNLK 190
>gi|160893680|ref|ZP_02074464.1| hypothetical protein CLOL250_01234 [Clostridium sp. L2-50]
gi|156864665|gb|EDO58096.1| hypothetical protein CLOL250_01234 [Clostridium sp. L2-50]
Length = 309
Score = 40.6 bits (94), Expect = 0.30, Method: Composition-based stats.
Identities = 33/198 (16%), Positives = 68/198 (34%), Gaps = 20/198 (10%)
Query: 114 NILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQ 173
N + V +F G I I + L ++ P ++
Sbjct: 76 NRFSFICAVALALFCAGGSIAILLGNFFL----------APVMAVGFLFLPFWYVKLTAN 125
Query: 174 KRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFL- 232
+ + AL ++ + + + V E+ + P+S + ++ +
Sbjct: 126 HYKRDVSAELETALSVITTAY---LRTEDIVTAVEENTAYLNPPVSRVFQDFLIQIKMVN 182
Query: 233 PNRQVAFENFYNRTQMDCVRNATQALI--QSDRYGTSIGDSLRVLVSETRSERLMEAE-K 289
P+ Q A R + R A+ Q DR S+ +L +VS+ R + AE +
Sbjct: 183 PDVQAALRILRGRIDNEVFREWCDAVSDCQHDR---SLKTTLPPIVSKLSDMRNVNAELE 239
Query: 290 KAASLGPKLTVPMIIFFL 307
+ K + M++F +
Sbjct: 240 YMIAEPRKEFMIMVVFVV 257
>gi|17547545|ref|NP_520947.1| fimbrial assembly transmembrane protein [Ralstonia solanacearum
GMI1000]
gi|17429849|emb|CAD16533.1| probable fimbrial assembly transmembrane protein [Ralstonia
solanacearum GMI1000]
Length = 421
Score = 40.6 bits (94), Expect = 0.30, Method: Composition-based stats.
Identities = 20/150 (13%), Positives = 52/150 (34%), Gaps = 15/150 (10%)
Query: 169 SNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAE 228
+ + + + L +++G+ + Q++ +A G + ++ + +
Sbjct: 70 RRRAARGKKIVPKDIAYFTRQLSTMLKAGVPLLQSVDIIAR--GHANPNFTQLLTEIRVD 127
Query: 229 LSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAE 288
+ + AF + LI + G + L L ++A+
Sbjct: 128 IESGSSMAQAFRRHPQHFD-----SLYCNLIDAGEQGGILDALLERLSMYMEKSIALKAQ 182
Query: 289 KKAA--------SLGPKLTVPMIIFFLPVL 310
K+A ++ +TV ++IF +P
Sbjct: 183 IKSAMIYPISVLTVAFLVTVVLMIFVVPAF 212
>gi|327310804|ref|YP_004337701.1| type II secretion system protein [Thermoproteus uzoniensis 768-20]
gi|326947283|gb|AEA12389.1| type II secretion system protein [Thermoproteus uzoniensis 768-20]
Length = 250
Score = 40.6 bits (94), Expect = 0.31, Method: Composition-based stats.
Identities = 18/118 (15%), Positives = 42/118 (35%), Gaps = 8/118 (6%)
Query: 176 QSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELS-FLPN 234
++ ++ PDAL + V G+ + A V+ P+++ +A S
Sbjct: 32 RARLESQIPDALRAIADAVSGGLDLRSAFEVVST---LGLSPIADVFRRVVALSSVGGAT 88
Query: 235 RQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSL----RVLVSETRSERLMEAE 288
A + + + ++++ R G + + L R + R + A+
Sbjct: 89 APDALWSVAEELGVPNFKRFALIVVEAARSGAKLPEVLGTAARTFATVVEFRRDLSAQ 146
>gi|111026114|ref|YP_708397.1| hypothetical protein RHA1_ro10046 [Rhodococcus jostii RHA1]
gi|110824957|gb|ABH00239.1| conserved hypothetical protein [Rhodococcus jostii RHA1]
Length = 291
Score = 40.6 bits (94), Expect = 0.31, Method: Composition-based stats.
Identities = 37/195 (18%), Positives = 64/195 (32%), Gaps = 18/195 (9%)
Query: 126 IFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPD 185
I L++G L + F L + +L+G P + ++Q S A +
Sbjct: 51 ILLVVGFAAGIVVSSLSGWLFTLFLVPALLVG-----LP-YLLGRPEAEQQISRLAAMDE 104
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVP-LSEEMLLTIAELSFLPNRQVAFENFYN 244
L +++G I+ + I L EE+ I+ L A F +
Sbjct: 105 WARNLSSSMKAGSGIEHTI------ISTPIPEALREEITAFISRLRNNVPPVDAITRFAS 158
Query: 245 RTQMDCVRNATQALIQSDRY-GTSIGDSLRVLVSE----TRSERLMEAEKKAASLGPKLT 299
AL+ S + G + L L + R EA++K++ K
Sbjct: 159 DLNDSVGDKICGALLLSMQLRGVGLAAVLEGLAEDVGDMVARRRRTEADRKSSRTQAKWV 218
Query: 300 VPMIIFFLPVLILVI 314
+ I L L
Sbjct: 219 TIIAITTLAAAFLFT 233
>gi|218461010|ref|ZP_03501101.1| pilus component protein [Rhizobium etli Kim 5]
Length = 45
Score = 40.6 bits (94), Expect = 0.32, Method: Composition-based stats.
Identities = 12/45 (26%), Positives = 21/45 (46%)
Query: 1 MPHYFFDLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRM 45
M + +A+ A+++F+ Y + IP G+L KRM
Sbjct: 1 MSQDLAATLTNPGMLIAVFVAIAVFATFYTIAIPFFERGDLTKRM 45
>gi|222529861|ref|YP_002573743.1| type II secretion system protein [Caldicellulosiruptor bescii DSM
6725]
gi|222456708|gb|ACM60970.1| type II secretion system protein [Caldicellulosiruptor bescii DSM
6725]
Length = 403
Score = 40.6 bits (94), Expect = 0.32, Method: Composition-based stats.
Identities = 21/156 (13%), Positives = 54/156 (34%), Gaps = 8/156 (5%)
Query: 172 VQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSF 231
VQ R+ + + +GI + AL +AE + + + ++
Sbjct: 54 VQLRKKIPIKDLAVFCRQFATMLMAGIPMVSALDVIAEQFKDRY--FGKVLEDIHKKVQS 111
Query: 232 LPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKA 291
A +C + +I++ S+ +L + + E + +
Sbjct: 112 GSMLSRALAEKA-----ECFPSILVNMIEAGEMSGSVDQALDRMATHFEKELKLRQKIIN 166
Query: 292 ASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
A + P + + + I L +++ ++ P + I +
Sbjct: 167 ALIYPAIVILVAIGVLIIMLTFVV-PTFVGIFSELN 201
>gi|326392591|ref|ZP_08213935.1| Type II secretion system F domain [Thermoanaerobacter ethanolicus
JW 200]
gi|325991368|gb|EGD50016.1| Type II secretion system F domain [Thermoanaerobacter ethanolicus
JW 200]
Length = 144
Score = 40.6 bits (94), Expect = 0.33, Method: Composition-based stats.
Identities = 23/145 (15%), Positives = 58/145 (40%), Gaps = 4/145 (2%)
Query: 183 WPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENF 242
P+ +DL + + + ++ A+ Q+ + + AE ++VA + F
Sbjct: 1 MPEIVDLFELGAAADVPLEDIFLITAQ--SAQAKEVRNALTKLAAEYIMTKEKEVALKRF 58
Query: 243 YNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPM 302
N + AL+Q +R G ++ + L L + + + ++ S+ K+
Sbjct: 59 INEVNLPEANVLAMALLQGERTGRTL-EILSTLSTSLFNTAASKIARQDKSMEYKVLAA- 116
Query: 303 IIFFLPVLILVIIGPAILSIIDTMK 327
+ F + ++ + I +I ++
Sbjct: 117 VFFLMASIVTLYIYSYFTNIQGGLR 141
>gi|229494799|ref|ZP_04388555.1| bacterial type II secretion system protein F domain protein
[Rhodococcus erythropolis SK121]
gi|229318295|gb|EEN84160.1| bacterial type II secretion system protein F domain protein
[Rhodococcus erythropolis SK121]
Length = 189
Score = 40.6 bits (94), Expect = 0.34, Method: Composition-based stats.
Identities = 29/140 (20%), Positives = 58/140 (41%), Gaps = 6/140 (4%)
Query: 187 LDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRT 246
LDLL C+ +G+ + A+ +A P+++ + L+ + A+
Sbjct: 50 LDLLGACLRAGLPVSAAITAMAS---TAPKPMADSLRRVADLLALGADPDAAWSEAAL-- 104
Query: 247 QMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFF 306
+ +S R G+S+ S+ L +R + A A G ++ P+ + F
Sbjct: 105 -DPDTEALARMARRSARSGSSLSSSMAELAERSRGDAEDLAAAAAERAGVLISGPLGLCF 163
Query: 307 LPVLILVIIGPAILSIIDTM 326
LP I + I P ++ + T+
Sbjct: 164 LPAFIALGIVPVVIGLATTV 183
>gi|37522234|ref|NP_925611.1| pilin biogenesis protein [Gloeobacter violaceus PCC 7421]
gi|35213234|dbj|BAC90606.1| pilin biogenesis protein [Gloeobacter violaceus PCC 7421]
Length = 410
Score = 40.6 bits (94), Expect = 0.35, Method: Composition-based stats.
Identities = 18/144 (12%), Positives = 48/144 (33%), Gaps = 8/144 (5%)
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
L +G+S+ ++L + + + L + + ++ + + F
Sbjct: 74 FARQLAAMTSAGVSLVRSLTVL--EEQSTNRKLKKVLTQVSFDVQQGSSLAASMRKFPQA 131
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
N A+IQ+ G + L L + ++ + ++A P + + +
Sbjct: 132 FD-----NLFVAMIQAGEAGGLLDQVLDRLSKLLEDQDRLQRQVRSALAYPVTVLILAVI 186
Query: 306 FLPVLILVIIGPAILSIIDTMKDH 329
++ I+ P I +
Sbjct: 187 IFLAMVTFIL-PVFKDIFKQLGGE 209
>gi|325969463|ref|YP_004245655.1| type II secretion system protein [Vulcanisaeta moutnovskia 768-28]
gi|323708666|gb|ADY02153.1| type II secretion system protein [Vulcanisaeta moutnovskia 768-28]
Length = 276
Score = 40.6 bits (94), Expect = 0.36, Method: Composition-based stats.
Identities = 22/147 (14%), Positives = 60/147 (40%), Gaps = 5/147 (3%)
Query: 127 FLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDA 186
F+I+ +I + ++ L + +L+ + + + V+++ V R S +R +
Sbjct: 41 FIIIALIMAYVLIPIITLRDILLIVTTVLL--IDYLSVLVYMNAKVYVRTSHFERYLANT 98
Query: 187 LDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELS-FLPNRQVAFENFYNR 245
L ++ V SG+++++ + +A I + ++ E + + + + A NR
Sbjct: 99 LMIMTPLVASGVTLEELIDTLA--IIERDPYIAREFKIILKDAREGGMDILTALRASLNR 156
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSL 272
+ ++ ++ D L
Sbjct: 157 VPSRTYNEVFSLITETYLISANLADIL 183
>gi|257793129|ref|YP_003186527.1| hypothetical protein Aaci_3142 [Alicyclobacillus acidocaldarius
subsp. acidocaldarius DSM 446]
gi|257479821|gb|ACV60138.1| hypothetical protein Aaci_3142 [Alicyclobacillus acidocaldarius
subsp. acidocaldarius DSM 446]
Length = 287
Score = 40.6 bits (94), Expect = 0.37, Method: Composition-based stats.
Identities = 26/168 (15%), Positives = 56/168 (33%), Gaps = 14/168 (8%)
Query: 126 IFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPD 185
++G + + + F L L V + ++ + + + + A P
Sbjct: 73 GLALVGALLPQVFGDPIWMSFGLAALCACLPFPVFRVLKTRYVWRVEKGLRET---ALPL 129
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSF-LPNRQVAFENFYN 244
L +L + G++I+ LR G+ + E A + + A
Sbjct: 130 GLSVLEATEDVGLAIEDILRH------GKDPVIQREFEAIRARVQALGLPPEDALVEHAM 183
Query: 245 RTQMDCVRNATQALIQSDRYGTSIG----DSLRVLVSETRSERLMEAE 288
++ + + Q RYG + D L L + + +M A+
Sbjct: 184 QSGVPAFQWLAQYTRTLKRYGANPSTIWRDVLTDLQDQAQFRSMMRAK 231
>gi|301166566|emb|CBW26142.1| general secretion pathway protein F [Bacteriovorax marinus SJ]
Length = 404
Score = 40.2 bits (93), Expect = 0.37, Method: Composition-based stats.
Identities = 28/142 (19%), Positives = 51/142 (35%), Gaps = 33/142 (23%)
Query: 220 EEMLLTIAELSFLPNRQ----VAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRV- 274
+E+ L +L+ L + AF ++T ++ + Q G+S+ ++L
Sbjct: 66 QELSLMTRQLATLIKAKIQIVEAFNALVDQTDNQKFKSILAEIKQKINEGSSLANALSDY 125
Query: 275 ---------------------LVSETRSERLMEAEKK-AASLGPKLTVPMII-----FFL 307
V R EA+ K + +T PMI+ +
Sbjct: 126 PKVFDNVYVNMVDAGETSGTLQVVLLRLADFTEAQVKLKNKIKGAMTYPMIMAFVGAGMM 185
Query: 308 PVLILVIIGPAILSIIDTMKDH 329
++ + +I P I I DTMK
Sbjct: 186 GIIFIFVI-PKITRIFDTMKKE 206
>gi|332670514|ref|YP_004453522.1| Type II secretion system F domain-containing protein [Cellulomonas
fimi ATCC 484]
gi|332339552|gb|AEE46135.1| Type II secretion system F domain protein [Cellulomonas fimi ATCC
484]
Length = 410
Score = 40.2 bits (93), Expect = 0.38, Method: Composition-based stats.
Identities = 24/154 (15%), Positives = 60/154 (38%), Gaps = 18/154 (11%)
Query: 180 KRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAF 239
+ L ++SG+S+ +AL ++E +S PL++ + +++ A
Sbjct: 70 LKDLAVMSRQLATMIDSGLSLLRALAILSE--QTESKPLAKVLAQVRSDVEVGVAFSTAL 127
Query: 240 ENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKA-ASLGPKL 298
++++ G + ++L + + EAE K + +
Sbjct: 128 GKHPTVFP-----PLMINMVKAGEVGGFLDETLVSVANNF------EAEVKLRGKIKSAM 176
Query: 299 TVPMIIFFLPVL----ILVIIGPAILSIIDTMKD 328
T P+++F + +L +L+ I P + ++
Sbjct: 177 TYPVVVFVVAILATTGMLLFIVPIFAGMFSSLGG 210
>gi|157283960|ref|YP_001468228.1| type II secretion system protein [Kineococcus radiotolerans
SRS30216]
gi|151363102|gb|ABS06104.1| type II secretion system protein [Kineococcus radiotolerans
SRS30216]
Length = 348
Score = 40.2 bits (93), Expect = 0.38, Method: Composition-based stats.
Identities = 27/179 (15%), Positives = 58/179 (32%), Gaps = 6/179 (3%)
Query: 135 IFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICV 194
+ LL + + I + P ++ Q RQ A ++ L +
Sbjct: 55 VAVAGGLLTLLITRWITVALAIAVIAVMWPRLFGGARSQARQIRKLEALASWVESLRDTI 114
Query: 195 ESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNA 254
+G ++ +AL A + ++E + + + + A + +
Sbjct: 115 STGQALPEALPASA---LTAAPEIAEPLANLLDRMRARQSLDQALLLLADDLDDPEADSV 171
Query: 255 TQALIQSDR-YGTSIGDSLRVLVSETRSERLMEAEKKAASLGPK--LTVPMIIFFLPVL 310
AL + R G + L L R + + E +A + +T +I V+
Sbjct: 172 IGALAMNARVQGKRLNVVLTSLAESARKQLTIRREIEAGRASMRRGVTFVIITTCTLVI 230
>gi|328952522|ref|YP_004369856.1| Type II secretion system F domain protein [Desulfobacca acetoxidans
DSM 11109]
gi|328452846|gb|AEB08675.1| Type II secretion system F domain protein [Desulfobacca acetoxidans
DSM 11109]
Length = 404
Score = 40.2 bits (93), Expect = 0.38, Method: Composition-based stats.
Identities = 30/154 (19%), Positives = 56/154 (36%), Gaps = 14/154 (9%)
Query: 163 APSVWISNLVQKRQSSIK-RAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEE 221
APS W L +R + R + L +++G+ +D++L+ A + E
Sbjct: 47 APSAWQGKLSFRRGRRVSSREVVLFTEELADLLKAGLPLDRSLQ--ALKEVTSRSGMKEV 104
Query: 222 MLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRS 281
+ + +L + +LIQ+ G + +SL L
Sbjct: 105 INQILRDLQGGKTLSDSLSR------HKAFSPLYVSLIQAGETGGFLDESLSRLSD---- 154
Query: 282 ERLMEAEKKAASLGPKLTVPMIIFFLPVLILVII 315
L + + L L PMI+ + L LV++
Sbjct: 155 -YLQTVSEFRSYLFTALIYPMILAGMGSLSLVLM 187
>gi|303238136|ref|ZP_07324672.1| conserved hypothetical protein [Acetivibrio cellulolyticus CD2]
gi|302594182|gb|EFL63894.1| conserved hypothetical protein [Acetivibrio cellulolyticus CD2]
Length = 294
Score = 40.2 bits (93), Expect = 0.39, Method: Composition-based stats.
Identities = 27/237 (11%), Positives = 89/237 (37%), Gaps = 16/237 (6%)
Query: 56 RKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFR--SEYSL 113
++++ + + +++T ++ V + + ++E +L R + +
Sbjct: 31 KRKKRSREFLAVSKKKMKTEKYLYFKDIVLRRMSNKLFLNEVKREQLNFIISRLDMKITP 90
Query: 114 NILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQ 173
+ + +++ + L++ ++ + L ++ +G+ P + V+
Sbjct: 91 EEIRLNQILYSLAGLLVSLVMMRLMPMLGY--------VCLIFIVLGWLYPIDELEKKVE 142
Query: 174 KRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDI-GGQSVPLSEEMLLTIAELSFL 232
+ +I + +P ++ SI+ L V +D + +++EM + + + +
Sbjct: 143 HKNKNILKDFPAFYSMVYYQYS--RSINIYLADVIKDFLPNANRDMADEMGVLLDNIEYG 200
Query: 233 PNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEK 289
+ A + F R + + + + G + L +E R++ E+
Sbjct: 201 E--EFALKQFKKRVPLRHIIKFCDIMETRLK-GYDNTSQMAYLKNELYDLRVVALEE 254
>gi|76803231|ref|YP_331326.1| transmembrane protein (type II secretion system proteins TadC)
[Natronomonas pharaonis DSM 2160]
gi|76559096|emb|CAI50694.1| transmembrane protein (homolog 5 to type II secretion system
proteins TadC) [Natronomonas pharaonis DSM 2160]
Length = 568
Score = 40.2 bits (93), Expect = 0.40, Method: Composition-based stats.
Identities = 28/152 (18%), Positives = 51/152 (33%), Gaps = 9/152 (5%)
Query: 144 YPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQA 203
P+ R A + +G + + R + + PDAL L+ V G+S+++A
Sbjct: 311 LPWWTRPIAAVGLGVGTGLFVLYRPTIAARDRTDAFDESLPDALYLVGRRVSDGVSVERA 370
Query: 204 LRRVAEDIGGQSVPLSEEMLLTIAELS-----FLPNRQVAFENFYNRTQMDCVRNATQAL 258
+ AE++ G + + + L A E +R R
Sbjct: 371 VADAAEELDGVAGEVFTDAARRQRRLRVDIETAFRGSHGALEELTSRRAESAARLFGV-- 428
Query: 259 IQSDRYGTSIGDSLRVLVSETRSERLMEAEKK 290
+ G G +L R +E E +
Sbjct: 429 --AANAGAPAGRALIETADHLDELRRVETEAR 458
>gi|297627360|ref|YP_003689123.1| hypothetical protein PFREUD_22090 [Propionibacterium freudenreichii
subsp. shermanii CIRM-BIA1]
gi|296923125|emb|CBL57712.1| Hypothetical membrane protein [Propionibacterium freudenreichii
subsp. shermanii CIRM-BIA1]
Length = 297
Score = 40.2 bits (93), Expect = 0.41, Method: Composition-based stats.
Identities = 33/175 (18%), Positives = 57/175 (32%), Gaps = 14/175 (8%)
Query: 127 FLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDA 186
+ G + + + L + ++L G + + R + A
Sbjct: 60 LAVAGALVGYLLTRSLLVTGGVPALILVLPGLL----------SAPPNRDVEVLEACDRW 109
Query: 187 LDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRT 246
+ LL+ V +G S+ A+R + L + IA L + A +
Sbjct: 110 VRLLIGSVSTGKSVPDAIRATRNQVA---PVLRAPVDGLIARLDARWSTASALRAMADDL 166
Query: 247 QMDCVRNATQALIQS-DRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV 300
ALI + R GT GD+LR L +R E P++ V
Sbjct: 167 AHPDADAIIAALIVATRRGGTGTGDALRALGQHSRRRLQSLREIATERAKPRIVV 221
>gi|268679669|ref|YP_003304100.1| type II secretion system F domain protein [Sulfurospirillum
deleyianum DSM 6946]
gi|268617700|gb|ACZ12065.1| Type II secretion system F domain protein [Sulfurospirillum
deleyianum DSM 6946]
Length = 413
Score = 40.2 bits (93), Expect = 0.45, Method: Composition-based stats.
Identities = 28/156 (17%), Positives = 55/156 (35%), Gaps = 10/156 (6%)
Query: 175 RQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPN 234
R+ + A+ L + +GISI +++ VA L +L+ +
Sbjct: 66 RKKIKITSLIAAIRQLSVMTNAGISIHDSVKEVAN--ATVDKTLKTIFQSINDDLNSGLS 123
Query: 235 RQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAE-KKAAS 293
+ R + V + T A+++ ++ +SL L + KKA
Sbjct: 124 LTQSL--MSYR---EDVGDVTIAMVELGESTGNMAESLEKLAEILEEIEENRQKFKKALR 178
Query: 294 LGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMKDH 329
TV + I +++V + P I +K
Sbjct: 179 YPT--TVVIAIAIAFTILMVYVVPKFKDIFSKLKAE 212
>gi|312876911|ref|ZP_07736887.1| Type II secretion system F domain [Caldicellulosiruptor
lactoaceticus 6A]
gi|311796322|gb|EFR12675.1| Type II secretion system F domain [Caldicellulosiruptor
lactoaceticus 6A]
Length = 403
Score = 40.2 bits (93), Expect = 0.45, Method: Composition-based stats.
Identities = 23/153 (15%), Positives = 52/153 (33%), Gaps = 8/153 (5%)
Query: 175 RQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPN 234
R+ + L + +GI + AL + E G + + + +
Sbjct: 57 RKKLSIKELSMFCRQLSTMLMAGIPLITALSVIVEQFKG--RAMGKVLEDIYKSVQSGSM 114
Query: 235 RQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASL 294
A +C + ++ S+ +L + + + L +K +L
Sbjct: 115 LSRALAEKG-----ECFPEILINMTEAGELSGSLDKTLERMATHF-EKELKLKQKIVNAL 168
Query: 295 GPKLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
V ++ F + V++LV + P + I D +
Sbjct: 169 IYPAIVLLVAFGVLVIMLVYVIPTFVGIFDELG 201
>gi|308274905|emb|CBX31504.1| hypothetical protein N47_E50160 [uncultured Desulfobacterium sp.]
Length = 391
Score = 40.2 bits (93), Expect = 0.45, Method: Composition-based stats.
Identities = 24/141 (17%), Positives = 57/141 (40%), Gaps = 9/141 (6%)
Query: 183 WPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENF 242
PD L + + SG+ + AL+ ++++ G L + +S + A E++
Sbjct: 62 LPDITRNLSMLLASGVQLMDALQSLSDEYPGFYGDL---LNQIRESVSSGTSLHKALESY 118
Query: 243 YNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPM 302
+ ++Q+ S+ L + ++ ++A+ ++A++ P L +
Sbjct: 119 GYVFPEYYIN-----MVQAGETSGSLDMVLVKIADFLETQASIKAKIRSATVYPLLMAGV 173
Query: 303 IIFFLPVLILVIIGPAILSII 323
L L ++ P I+ I
Sbjct: 174 STLILFFLFSFVM-PKIVRIF 193
>gi|147677482|ref|YP_001211697.1| type II secretory pathway, component PulF [Pelotomaculum
thermopropionicum SI]
gi|146273579|dbj|BAF59328.1| type II secretory pathway, component PulF [Pelotomaculum
thermopropionicum SI]
Length = 402
Score = 40.2 bits (93), Expect = 0.46, Method: Composition-based stats.
Identities = 19/155 (12%), Positives = 56/155 (36%), Gaps = 10/155 (6%)
Query: 167 WISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTI 226
++ KR+ + L + +GI + + L +++ ++ LS+
Sbjct: 50 ILNLFKAKRKVKLPDVL-FFTRQLAAMLAAGIPLTRCLNTLSK--QSENASLSDIASEMA 106
Query: 227 AELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSET-RSERLM 285
+ N A + + + ++++ G S+ + L L + R +RL
Sbjct: 107 RNVEAGMNLSEALKAYP-----EVFSAMYVDMVRAGEIGGSMEEMLNRLADQLERDKRLR 161
Query: 286 EAEKKAASLGPK-LTVPMIIFFLPVLILVIIGPAI 319
++ + A + +++ + + +V +
Sbjct: 162 DSIRSATFYPATVMAFALLVVLVMLTFVVPVFAGF 196
>gi|312793028|ref|YP_004025951.1| type II secretion system f domain [Caldicellulosiruptor
kristjanssonii 177R1B]
gi|312180168|gb|ADQ40338.1| Type II secretion system F domain [Caldicellulosiruptor
kristjanssonii 177R1B]
Length = 403
Score = 40.2 bits (93), Expect = 0.46, Method: Composition-based stats.
Identities = 23/153 (15%), Positives = 52/153 (33%), Gaps = 8/153 (5%)
Query: 175 RQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPN 234
R+ + L + +GI + AL + E G + + + +
Sbjct: 57 RKKLSIKELSMFCRQLSTMLMAGIPLITALSVIVEQFKG--RAMGKVLEDIYKSVQSGSM 114
Query: 235 RQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASL 294
A +C + ++ S+ +L + + + L +K +L
Sbjct: 115 LSRALAEKG-----ECFPEILINMTEAGELSGSLDKTLERMATHF-EKELKLKQKIVNAL 168
Query: 295 GPKLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
V ++ F + V++LV + P + I D +
Sbjct: 169 IYPAIVLLVAFGVLVIMLVYVIPTFVGIFDELG 201
>gi|266619933|ref|ZP_06112868.1| conserved hypothetical protein [Clostridium hathewayi DSM 13479]
gi|288868471|gb|EFD00770.1| conserved hypothetical protein [Clostridium hathewayi DSM 13479]
Length = 310
Score = 40.2 bits (93), Expect = 0.46, Method: Composition-based stats.
Identities = 28/206 (13%), Positives = 74/206 (35%), Gaps = 19/206 (9%)
Query: 107 FRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSV 166
R + ++ + I+F + ++ + + V V ++G P
Sbjct: 67 LRDTGRADRFEALKRLTLILFAVGAVLALLIDN----------VYMVPIMGIGFSLLPVW 116
Query: 167 WISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTI 226
++ + + + A+ ++ + + +R + E++ + P+ +
Sbjct: 117 YLHSTAASYKKHLNEELETAISIITTSY---LRTEDIIRSIQENLPYINEPVKANFEAFV 173
Query: 227 AELSFL-PNRQVAFENFYNRTQMDCVRNATQALI--QSDRYGTSIGDSLRVLVSETRSER 283
E + N A + + LI QSDR S+ ++L + + R
Sbjct: 174 YEARLINANTTSAINSLKMKIPNRVFHEWCNILIQCQSDR---SMKNTLPTIAQKFSDVR 230
Query: 284 LMEAEKKAASLGPKLTVPMIIFFLPV 309
++++E +A GP+ ++F +
Sbjct: 231 IVQSELEAMMQGPRREAITMMFLVIA 256
>gi|322371097|ref|ZP_08045649.1| type II secretion system protein [Haladaptatus paucihalophilus
DX253]
gi|320549087|gb|EFW90749.1| type II secretion system protein [Haladaptatus paucihalophilus
DX253]
Length = 570
Score = 40.2 bits (93), Expect = 0.47, Method: Composition-based stats.
Identities = 26/116 (22%), Positives = 51/116 (43%), Gaps = 8/116 (6%)
Query: 122 VVPIIFLILGIIWIFGYDKLLEYPFQLR----VGAVILIGYVGFCAPSVWISNLVQKRQS 177
+ P+I LG + + P R G ++ + VG P+V + N R
Sbjct: 296 LWPVIISGLGAGGLALVVTTVFLPGWTRWIACFGCLVGVLLVGVTRPTVLVRN----RVR 351
Query: 178 SIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLP 233
+++ DAL L+ V+ G++++ A+ A++IGG++ + E +L
Sbjct: 352 AVEADLTDALYLVGRRVKEGLAVETAIVAAADEIGGETGAVFERATRIQRQLRMGV 407
>gi|238020907|ref|ZP_04601333.1| hypothetical protein GCWU000324_00804 [Kingella oralis ATCC 51147]
gi|237867887|gb|EEP68893.1| hypothetical protein GCWU000324_00804 [Kingella oralis ATCC 51147]
Length = 427
Score = 40.2 bits (93), Expect = 0.47, Method: Composition-based stats.
Identities = 24/164 (14%), Positives = 60/164 (36%), Gaps = 11/164 (6%)
Query: 168 ISNLVQKRQSSI-KRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTI 226
++ + ++RQ I L +++G+ + QA VA+ G + ++ +L
Sbjct: 73 LTKMKKQRQKKITSADIAVFTRQLSTMMKAGLPLMQAFDIVAK--GHSNAAMTNLLLDVK 130
Query: 227 AELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLME 286
+ + +F L+ + G + L L + + ++
Sbjct: 131 NSVEQGNSLASSFSQHPKYFD-----KFYCNLVAAGEAGGVLEGLLDKLATYMEKTQAIK 185
Query: 287 AEKK-AASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMKDH 329
+ K A + + V I+ L +++ V+ P+ I + +
Sbjct: 186 KKVKSALTYPIAVIVVAIVLILVMMMFVL--PSFKKIYEGLGAE 227
>gi|89897305|ref|YP_520792.1| hypothetical protein DSY4559 [Desulfitobacterium hafniense Y51]
gi|89336753|dbj|BAE86348.1| hypothetical protein [Desulfitobacterium hafniense Y51]
Length = 106
Score = 40.2 bits (93), Expect = 0.48, Method: Composition-based stats.
Identities = 20/110 (18%), Positives = 46/110 (41%), Gaps = 9/110 (8%)
Query: 222 MLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRS 281
M + A++ + + A F R + + + LI R G ++L + ++
Sbjct: 1 MDVLTADMRS-SSYEAALIRFEARLNSPMLSDVVRGLIGVLR-GDDSAVYFQMLSHDFKA 58
Query: 282 ERLMEAEKKAASLGPKL---TVPMIIFFLPVLILVIIGPAILSIIDTMKD 328
L + +A + PK+ + M++ FL +++I L I+++
Sbjct: 59 LELQRLKGQARKIPPKIRVFSFIMLMCFLFTYLVIIA----LEIMNSFSS 104
>gi|119872899|ref|YP_930906.1| type II secretion system protein [Pyrobaculum islandicum DSM 4184]
gi|119674307|gb|ABL88563.1| type II secretion system protein [Pyrobaculum islandicum DSM 4184]
Length = 248
Score = 39.9 bits (92), Expect = 0.49, Method: Composition-based stats.
Identities = 17/104 (16%), Positives = 37/104 (35%), Gaps = 6/104 (5%)
Query: 178 SIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLL--TIAELSFLPNR 235
++ P L +L V +G+S+ A+ A P+++ + T++E+
Sbjct: 30 RLEGQIPQVLRVLSDAVSAGLSLRGAVESAA---ALALRPMADVLRRVLTLSEV-GGLTV 85
Query: 236 QVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSET 279
+ A R + ++ R G + + L V
Sbjct: 86 EEALWRVAGEVPSPNFRRFALIVTEAARSGARLPEVLDVSARSF 129
>gi|261338432|ref|ZP_05966316.1| putative integral membrane protein [Bifidobacterium gallicum DSM
20093]
gi|270276410|gb|EFA22264.1| putative integral membrane protein [Bifidobacterium gallicum DSM
20093]
Length = 193
Score = 39.9 bits (92), Expect = 0.50, Method: Composition-based stats.
Identities = 16/62 (25%), Positives = 31/62 (50%)
Query: 263 RYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
GT +R ++ + + + E++A+ L L VP + FLP I + + P I ++
Sbjct: 132 ERGTQAVPQIRAMIEQLDTAERADLEQRASRLSVNLLVPTALCFLPAFICIAVIPTIAAM 191
Query: 323 ID 324
I+
Sbjct: 192 IN 193
>gi|89901674|ref|YP_524145.1| type II secretion system protein [Rhodoferax ferrireducens T118]
gi|89346411|gb|ABD70614.1| type II secretion system protein [Rhodoferax ferrireducens T118]
Length = 405
Score = 39.9 bits (92), Expect = 0.50, Method: Composition-based stats.
Identities = 27/161 (16%), Positives = 61/161 (37%), Gaps = 9/161 (5%)
Query: 168 ISNLVQKRQSSIK-RAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTI 226
I + SIK + L +++G+ + QA V G + +++ +
Sbjct: 52 IKKRRMRAGKSIKPKDLAIFTRQLATMMKAGVPLLQAFDIVGR--GNPNPSVTKLLNDIR 109
Query: 227 AELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLME 286
++ + VAF F N LI++ + L L ++
Sbjct: 110 TDVETGTSLSVAFRKFPLYFD-----NLYCNLIEAGESAGILDQLLDRLAVYMEKTEAIK 164
Query: 287 AEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
++ K+A + P ++V ++ F + +I++ + PA +
Sbjct: 165 SKIKSALMYP-ISVLIVAFVVTAVIMIFVVPAFKEVFSNFG 204
>gi|220930143|ref|YP_002507052.1| hypothetical protein Ccel_2774 [Clostridium cellulolyticum H10]
gi|220000471|gb|ACL77072.1| conserved hypothetical protein [Clostridium cellulolyticum H10]
Length = 290
Score = 39.9 bits (92), Expect = 0.51, Method: Composition-based stats.
Identities = 21/148 (14%), Positives = 55/148 (37%), Gaps = 8/148 (5%)
Query: 171 LVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELS 230
++ ++ I+ P + ++S + L V E+ + A++
Sbjct: 137 KLKFKREQIESELPRFAATIEQSLKSNRDVLAMLE---SYKKNAGVAFRRELDILTADMR 193
Query: 231 FLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKK 290
+ A F R + + + L+ R G ++L + ++ L + +
Sbjct: 194 S-SGYEAALTRFEARMNSSRLSDVVRGLVGVLR-GDDGTVYFQMLGHDFKTLELHRLKGE 251
Query: 291 AASLGPKL---TVPMIIFFLPVLILVII 315
A + PK+ + M++ F+ +++I
Sbjct: 252 AKKIPPKIRIFSFVMLMCFMFTYLVIIA 279
>gi|301629343|ref|XP_002943802.1| PREDICTED: general secretion pathway protein F-like [Xenopus
(Silurana) tropicalis]
Length = 308
Score = 39.9 bits (92), Expect = 0.52, Method: Composition-based stats.
Identities = 24/124 (19%), Positives = 49/124 (39%), Gaps = 9/124 (7%)
Query: 190 LLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMD 249
L V SG+ +++AL +A++ + + AE++ + A
Sbjct: 78 LAGLVASGLPLERALTALADEAEDERQH--HLVAALRAEVNAGSSFARALTQHPR----- 130
Query: 250 CVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPV 309
+ A+I + S+G L L + + + A+ A+L P + ++ + V
Sbjct: 131 EFSDIYCAVIGAGEASGSLGLVLERLADDLEERQQLRAKIIGAALYPA--IVTVVALVIV 188
Query: 310 LILV 313
L LV
Sbjct: 189 LFLV 192
>gi|256372059|ref|YP_003109883.1| hypothetical protein Afer_1279 [Acidimicrobium ferrooxidans DSM
10331]
gi|256008643|gb|ACU54210.1| hypothetical protein Afer_1279 [Acidimicrobium ferrooxidans DSM
10331]
Length = 267
Score = 39.9 bits (92), Expect = 0.53, Method: Composition-based stats.
Identities = 33/195 (16%), Positives = 73/195 (37%), Gaps = 6/195 (3%)
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
LG + G ++ + GA++ V + ++ + ++ W L
Sbjct: 73 PALGASGLVGAVGIVGHSAPAVSGALMAPVVV-VALRVAMVMATARRVRERLRATWSSEL 131
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQ 247
+ V +G S+ AL P S + +AE+ + +VA + R +
Sbjct: 132 GEIRHLVAAGASLPGAL----TTRRDADTPWSTQWHGALAEMGEGTDLEVALAHVAERLR 187
Query: 248 MDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFL 307
V A + L S G ++ +L L + + R +A + A+ + +P+ + L
Sbjct: 188 DANVGAALRLLGSSWAVG-AVTPALGELERDALARRRADALRLASRREQLVWIPVAVSAL 246
Query: 308 PVLILVIIGPAILSI 322
+ +++ P +
Sbjct: 247 VPGVTLVVVPLAAGL 261
>gi|318060835|ref|ZP_07979558.1| hypothetical protein SSA3_23033 [Streptomyces sp. SA3_actG]
Length = 274
Score = 39.9 bits (92), Expect = 0.54, Method: Composition-based stats.
Identities = 26/134 (19%), Positives = 52/134 (38%), Gaps = 6/134 (4%)
Query: 193 CVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVR 252
CV +G +A V + G + E + AE+ + A+ F + +
Sbjct: 144 CVAAGAGPVEAAEAVGASLDGL---VGERLRHVAAEIRLGGEPERAWALFGS---LPGAG 197
Query: 253 NATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLIL 312
L ++ G + L ++ R+ A A G +TVP+ + FLP ++
Sbjct: 198 GLAGLLQRATVSGAPVAAPALALAADCRARWARGATAAARRAGVLVTVPLGLCFLPAFLI 257
Query: 313 VIIGPAILSIIDTM 326
+ + P +L + +
Sbjct: 258 LGVAPVLLGLAGEL 271
>gi|83648785|ref|YP_437220.1| type II secretory pathway subunit PulF [Hahella chejuensis KCTC
2396]
gi|83636828|gb|ABC32795.1| Type II secretory pathway, component PulF [Hahella chejuensis KCTC
2396]
Length = 409
Score = 39.9 bits (92), Expect = 0.54, Method: Composition-based stats.
Identities = 32/163 (19%), Positives = 55/163 (33%), Gaps = 10/163 (6%)
Query: 166 VWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLT 225
+W+ L R+ + +GI I +A+R +AE ++ L+E +
Sbjct: 53 LWLKKLPIFRKKVTLDELVILCRQMHALSRAGIPIIRAIRGLAESTRSET--LAEVLDDV 110
Query: 226 IAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLM 285
L N A + RT + ++ + G + +S R L ER
Sbjct: 111 ARRLEGGVNLATAMRA-HPRTFNE---LFVSMILVGENTG-QLEESFRQLGENIELERDT 165
Query: 286 EAE-KKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
+A + V + I L V VI PA +
Sbjct: 166 RKRVGQAVRYPIMVVVAITIALLVVNFFVI--PAFAGVFAKFG 206
>gi|21226514|ref|NP_632436.1| flagellar assembly protein J [Methanosarcina mazei Go1]
gi|20904782|gb|AAM30108.1| flagella related protein FlaJ [Methanosarcina mazei Go1]
Length = 515
Score = 39.9 bits (92), Expect = 0.54, Method: Composition-based stats.
Identities = 36/218 (16%), Positives = 85/218 (38%), Gaps = 15/218 (6%)
Query: 99 VNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGY 158
KL A +S I + R+++P+ L ++ + G K IL+G
Sbjct: 208 EKKLHALSRKSREQERIKFLSRVLLPLGAFSLTVLILLGTRKEY-----------ILLGV 256
Query: 159 VGFCAPSVWISNLVQKRQSSIKRAWPDALDLL-LICVESGISIDQALRRVAEDIGGQSVP 217
F P ++ ++ ++P + L + +GI+I A+ + + G P
Sbjct: 257 PFFTLPIGVLAVADDRKIDERDSSFPAFIKTLGTLAGTTGITIRSAMENLDRETIGCLKP 316
Query: 218 LSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVS 277
EE+ LS ++ +E F T + + +++ + G + ++ +
Sbjct: 317 GVEELHK---GLSMGFKSRLCWEKFIGETGSELINRSSRIFNDAVELGGDPAEIGNIVSA 373
Query: 278 ETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVII 315
+ + L+ +++ S G K + + L++ ++
Sbjct: 374 SSLAIVLLRMKRQLVSSGFKGLALTLHAVMVGLLIFVM 411
>gi|70608026|ref|YP_256896.1| hypothetical protein Saci_2318 [Sulfolobus acidocaldarius DSM 639]
gi|68568674|gb|AAY81603.1| conserved Archaeal membrane protein [Sulfolobus acidocaldarius DSM
639]
Length = 611
Score = 39.9 bits (92), Expect = 0.56, Method: Composition-based stats.
Identities = 33/220 (15%), Positives = 83/220 (37%), Gaps = 13/220 (5%)
Query: 114 NILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQ------LRVGAVILIGYVGFCAPSVW 167
+ + + +PI ++ +I IF + + V +LIG + AP +
Sbjct: 314 SAYKIFYISLPIGLVVAFLIMIFEHQIVYFITLSGGLQNVFPVSIALLIGLLIASAPPAF 373
Query: 168 ISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRV--AEDIGGQSVPLSEEMLLT 225
+ +S + L+ + + +G++ + + R+ A+++G E +
Sbjct: 374 FYQKEMREKSGFEEYAVKFLNAISEGLLAGLTFESIVTRLKDAQEMGK----FREVLRKV 429
Query: 226 IAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLM 285
L +A + + R A L G+ D++R L + + +L+
Sbjct: 430 DGYLKLGYPLTIALKRGADSINEFTSRIALYTLSDMIEIGSMTPDNVRALADQI-NSQLV 488
Query: 286 EAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDT 325
+ + P + P + ++ ++ ILS++++
Sbjct: 489 VRREYQGKVKPLIATPYAGVLVSLIATFLLASGILSMLNS 528
>gi|304386512|ref|ZP_07368800.1| 3-isopropylmalate dehydrogenase [Neisseria meningitidis ATCC 13091]
gi|304339341|gb|EFM05413.1| 3-isopropylmalate dehydrogenase [Neisseria meningitidis ATCC 13091]
Length = 410
Score = 39.9 bits (92), Expect = 0.58, Method: Composition-based stats.
Identities = 26/157 (16%), Positives = 47/157 (29%), Gaps = 19/157 (12%)
Query: 164 PSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEML 223
P ++ + L +++G+ + QA VA G + ++E ++
Sbjct: 53 PLQITRVKTSSKRKITQEDITVFTRQLSTMIKAGLPLMQAFEIVAR--GHGNPSMTEMLM 110
Query: 224 LTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSER 283
E+ + AF N L+ + G + L L E+
Sbjct: 111 EIRGEVEQGSSLSRAFSNHPKYFD-----RFYCNLVAAGETGGVLESLLDKLA--IYKEK 163
Query: 284 LMEAEKKAASL----------GPKLTVPMIIFFLPVL 310
KK + L M+IF LP
Sbjct: 164 TQAIRKKVKTALTYPVSVIAVAIGLVFVMMIFVLPAF 200
>gi|291286276|ref|YP_003503092.1| Type II secretion system F domain protein [Denitrovibrio
acetiphilus DSM 12809]
gi|290883436|gb|ADD67136.1| Type II secretion system F domain protein [Denitrovibrio
acetiphilus DSM 12809]
Length = 402
Score = 39.9 bits (92), Expect = 0.58, Method: Composition-based stats.
Identities = 27/166 (16%), Positives = 60/166 (36%), Gaps = 12/166 (7%)
Query: 163 APSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEM 222
PS + ++ RQ + + ++ L + V SG+ I AL +A+D L +
Sbjct: 45 LPSFY--RFLRFRQKINPQDIVELIENLHLTVRSGLPISSALSDLAKDADNNH--LQSVL 100
Query: 223 LLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSE 282
+ A + T L++ + ++L+ +
Sbjct: 101 ENISNRVHAGMTLSKALSRHSG-----IFSDITVNLVRIGEETGKLDNTLKDAAEHMKKM 155
Query: 283 RLMEAEKKAASL-GPKLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
+ + K+A + V MI+ + L+ V+ P ++S + +
Sbjct: 156 NDLTTKTKSALIYPSFALVGMILTMVFWLVAVM--PKMISAFKSFQ 199
>gi|156937801|ref|YP_001435597.1| type II secretion system protein [Ignicoccus hospitalis KIN4/I]
gi|156566785|gb|ABU82190.1| type II secretion system protein [Ignicoccus hospitalis KIN4/I]
Length = 311
Score = 39.9 bits (92), Expect = 0.58, Method: Composition-based stats.
Identities = 36/212 (16%), Positives = 71/212 (33%), Gaps = 18/212 (8%)
Query: 117 LVVRLVVPIIFLILGIIW-------IFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWIS 169
+++ +V+PI+ + +G++ +F + P++ I I + A
Sbjct: 8 IIISIVLPIVGIFVGVLLYQPPGDKVFEALPRIYLPYRPETLRAIGISLMLIIAGPAIGY 67
Query: 170 NLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAEL 229
+R S+ P L L + V SG+ ++ A +++ G P + I L
Sbjct: 68 YKFMRRVESVITNTPLMLQDLAVTVRSGVKVNAAFVEISDRDYGALSPYVRRIASMIYLL 127
Query: 230 SFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAE- 288
+ A R R + ++ G + L R R E E
Sbjct: 128 --GLDLLDAIR-LVIRELPKETRKYFYFIEEAYESGGRAMEVLDKASELARRIREFELER 184
Query: 289 KKAASLGPKLTVPMIIFFLPVLILVIIGPAIL 320
+K L +++ + AIL
Sbjct: 185 EKTLKNQG-------FIILFSVLIFVATAAIL 209
>gi|313893588|ref|ZP_07827157.1| type II secretion system protein F domain protein [Veillonella sp.
oral taxon 158 str. F0412]
gi|313441859|gb|EFR60282.1| type II secretion system protein F domain protein [Veillonella sp.
oral taxon 158 str. F0412]
Length = 391
Score = 39.9 bits (92), Expect = 0.60, Method: Composition-based stats.
Identities = 28/140 (20%), Positives = 56/140 (40%), Gaps = 18/140 (12%)
Query: 190 LLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAE-LSFLPNRQVAFENFYNRTQM 248
L + +ESG+ + +AL+ + + G + + E + A
Sbjct: 65 LGLLIESGVPLRRALQLLCQGKRGL-------LYTALYESIERGQTLSQALR-------S 110
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKK-AASLGPKLTVPMIIFFL 307
+ AL++S ++G+SL+ + ER + + A S L + M +FFL
Sbjct: 111 EGCPAIALALLESGEAAGTLGESLQYISRHYDWERQLRQKVMSAISYPIFLLLMMNVFFL 170
Query: 308 PVLILVIIGPAILSIIDTMK 327
++ +I P+ + TM
Sbjct: 171 VTILFII--PSFEKVFTTMH 188
>gi|152993257|ref|YP_001358978.1| general secretory pathway protein F [Sulfurovum sp. NBC37-1]
gi|151425118|dbj|BAF72621.1| general secretory pathway protein F [Sulfurovum sp. NBC37-1]
Length = 417
Score = 39.9 bits (92), Expect = 0.60, Method: Composition-based stats.
Identities = 30/143 (20%), Positives = 55/143 (38%), Gaps = 8/143 (5%)
Query: 187 LDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRT 246
+ + + ++GI I L VA++ + L E ++++ + A E +
Sbjct: 79 IRQIAVMTDAGIPITDTLEDVADN--TDNQKLKEIYNKMHSDINAGNSMSDAMEPY---- 132
Query: 247 QMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFF 306
+D A+ Q +I +S L S R + K A P +T+ +
Sbjct: 133 -IDEFGQVALAMTQLGERTGNISESYHKLAKILESIRDNTRKFKKAIRTPMITMAAMAIA 191
Query: 307 LPVLILVIIGPAILSIIDTMKDH 329
VLI+V++ P I D K
Sbjct: 192 FTVLIMVVV-PKFKDIFDKFKTE 213
>gi|15642869|ref|NP_227910.1| general secretion pathway protein F, putative [Thermotoga maritima
MSB8]
gi|4980584|gb|AAD35188.1|AE001696_2 general secretion pathway protein F, putative [Thermotoga maritima
MSB8]
Length = 399
Score = 39.9 bits (92), Expect = 0.60, Method: Composition-based stats.
Identities = 24/134 (17%), Positives = 53/134 (39%), Gaps = 12/134 (8%)
Query: 182 AWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFEN 241
L I + +GI I +AL +A S I E++ +
Sbjct: 61 EIATFCRQLSIMISAGIRIKEALNILARQ-----TVFSRRFRKVILEIALNVETGDSLAE 115
Query: 242 FYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVP 301
+ +T + N +++++ G + +L+ S + ++ E K+A + P
Sbjct: 116 AFRKTGVFD--NVLISMLEAGEEGGVLDRTLKRAADFYESIKRLQDEVKSA-----MAYP 168
Query: 302 MIIFFLPVLILVII 315
+ + F V+I+++I
Sbjct: 169 LFVLFFAVVIVLVI 182
>gi|302553401|ref|ZP_07305743.1| integral membrane protein [Streptomyces viridochromogenes DSM
40736]
gi|302471019|gb|EFL34112.1| integral membrane protein [Streptomyces viridochromogenes DSM
40736]
Length = 315
Score = 39.9 bits (92), Expect = 0.60, Method: Composition-based stats.
Identities = 16/100 (16%), Positives = 30/100 (30%), Gaps = 1/100 (1%)
Query: 216 VPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRY-GTSIGDSLRV 274
L + + L A ++ + ALI + R G + L
Sbjct: 139 PVLRPHLDALVDRLRARTPLPEALQHLADEIDDASADIIVAALILNARLRGPGLRQVLGA 198
Query: 275 LVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVI 314
L R E M A + +V +++ +L +
Sbjct: 199 LAKSAREEVDMRQRVMAQRASTRRSVQIVVAVSIAFVLGL 238
>gi|302544239|ref|ZP_07296581.1| putative integral membrane protein [Streptomyces hygroscopicus ATCC
53653]
gi|302461857|gb|EFL24950.1| putative integral membrane protein [Streptomyces himastatinicus
ATCC 53653]
Length = 230
Score = 39.9 bits (92), Expect = 0.61, Method: Composition-based stats.
Identities = 23/106 (21%), Positives = 37/106 (34%), Gaps = 1/106 (0%)
Query: 211 IGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGD 270
+ S L E L A F + A + + + + G +
Sbjct: 76 LSVPSGDLGERWGLVSAAARFGGDVPEALRRAARQPGAEGLTGVAACWQVAVDEGAGLAA 135
Query: 271 SLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIG 316
L + S R+ER +A GPK+TV ++ LP LV+
Sbjct: 136 GLDRVASALRAEREQREILRARLAGPKVTVA-VLAVLPAFGLVMGA 180
>gi|325143047|gb|EGC65398.1| Bacterial type II secretion system protein F domain protein
[Neisseria meningitidis 961-5945]
Length = 402
Score = 39.5 bits (91), Expect = 0.63, Method: Composition-based stats.
Identities = 26/157 (16%), Positives = 47/157 (29%), Gaps = 19/157 (12%)
Query: 164 PSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEML 223
P ++ + L +++G+ + QA VA G + ++E ++
Sbjct: 45 PLQITRVKTSSKRKITQEDITVFTRQLSTMIKAGLPLMQAFEIVAR--GHGNPSMTEMLM 102
Query: 224 LTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSER 283
E+ + AF N L+ + G + L L E+
Sbjct: 103 EIRGEVEQGSSLSRAFSNHPKYFD-----RFYCNLVAAGETGGVLESLLDKLA--IYKEK 155
Query: 284 LMEAEKKAASL----------GPKLTVPMIIFFLPVL 310
KK + L M+IF LP
Sbjct: 156 TQAIRKKVKTALTYPVSVIAVAIGLVFVMMIFVLPAF 192
>gi|325132888|gb|EGC55565.1| Bacterial type II secretion system protein F domain protein
[Neisseria meningitidis M6190]
gi|325138873|gb|EGC61423.1| Bacterial type II secretion system protein F domain protein
[Neisseria meningitidis ES14902]
Length = 410
Score = 39.5 bits (91), Expect = 0.64, Method: Composition-based stats.
Identities = 26/157 (16%), Positives = 47/157 (29%), Gaps = 19/157 (12%)
Query: 164 PSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEML 223
P ++ + L +++G+ + QA VA G + ++E ++
Sbjct: 53 PLQITRVKTSSKRKITQEDITVFTRQLSTMIKAGLPLMQAFEIVAR--GHGNPSMTEMLM 110
Query: 224 LTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSER 283
E+ + AF N L+ + G + L L E+
Sbjct: 111 EIRGEVEQGSSLSRAFSNHPKYFD-----RFYCNLVAAGETGGVLESLLDKLA--IYKEK 163
Query: 284 LMEAEKKAASL----------GPKLTVPMIIFFLPVL 310
KK + L M+IF LP
Sbjct: 164 TQAIRKKVKTALTYPVSVIAVAIGLVFVMMIFVLPAF 200
>gi|228912616|ref|ZP_04076275.1| hypothetical protein bthur0013_66730 [Bacillus thuringiensis IBL
200]
gi|228847025|gb|EEM92020.1| hypothetical protein bthur0013_66730 [Bacillus thuringiensis IBL
200]
Length = 292
Score = 39.5 bits (91), Expect = 0.64, Method: Composition-based stats.
Identities = 18/90 (20%), Positives = 35/90 (38%), Gaps = 1/90 (1%)
Query: 106 GFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPS 165
G+RS+ + + + + + I+FLIL I L L +L +G P
Sbjct: 8 GYRSKTAWKMFIASIVYIFILFLILQAIIPNSIRPALVNIGFLGFSLSLLALIIGLIKPQ 67
Query: 166 VWI-SNLVQKRQSSIKRAWPDALDLLLICV 194
+ ++ R+ + AL L+ +
Sbjct: 68 FVLPKIQIKTRKKVVYSYLYLALAFFLMGI 97
>gi|257386300|ref|YP_003176073.1| type II secretion system protein [Halomicrobium mukohataei DSM
12286]
gi|257168607|gb|ACV46366.1| type II secretion system protein [Halomicrobium mukohataei DSM
12286]
Length = 582
Score = 39.5 bits (91), Expect = 0.65, Method: Composition-based stats.
Identities = 38/237 (16%), Positives = 79/237 (33%), Gaps = 10/237 (4%)
Query: 93 LVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGA 152
L I + L A + L L L+ I F +L + D + + +
Sbjct: 12 LTLSEIFDDLLDAYRQMHIPLQRYLFFILLPAIAFFLLSAVAALVLDLPMMIRAPIPMLG 71
Query: 153 VILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIG 212
+ + F P + IS +R+S + + + + + + I + R +A++
Sbjct: 72 FLAMAAAIFY-PKILIS----QRRSQLNNRFHLLVTHMTVLATTKIDRMEVFRTLAQE-- 124
Query: 213 GQSVPLSEEMLLTIAELS-FLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDS 271
+ L+ EM + + + + A V + L + G S+ D
Sbjct: 125 EEYGELANEMHRIVELVDTWNQSLDDACRRRAKEVPSAAVSDFLDRLAYTLGAGQSLEDY 184
Query: 272 LRVLVSETRSERLMEAEKKAASLGPK--LTVPMIIFFLPVLILVIIGPAILSIIDTM 326
L + E +L L + M++ L+ ++ P + TM
Sbjct: 185 LLSEQEQIIQNYTTVYEGTLDNLEVMKDLYLSMVLSMTFALVFAVVLPVLTGTDPTM 241
>gi|15676248|ref|NP_273382.1| pilus assembly protein PilG [Neisseria meningitidis MC58]
gi|121635531|ref|YP_975776.1| pilus-assembly protein [Neisseria meningitidis FAM18]
gi|161870737|ref|YP_001599910.1| type IV pilus assembly protein [Neisseria meningitidis 053442]
gi|218768891|ref|YP_002343403.1| pilus-assembly protein [Neisseria meningitidis Z2491]
gi|254805632|ref|YP_003083853.1| type IV pilus assembly protein [Neisseria meningitidis alpha14]
gi|7225553|gb|AAF40776.1| pilus assembly protein PilG [Neisseria meningitidis MC58]
gi|120867237|emb|CAM11006.1| pilus-assembly protein [Neisseria meningitidis FAM18]
gi|121052899|emb|CAM09251.1| pilus-assembly protein [Neisseria meningitidis Z2491]
gi|161596290|gb|ABX73950.1| type IV pilus assembly protein [Neisseria meningitidis 053442]
gi|254669174|emb|CBA07900.1| type IV pilus assembly protein [Neisseria meningitidis alpha14]
gi|254670164|emb|CBA05222.1| pilus assembly protein PilC [Neisseria meningitidis alpha153]
gi|254672314|emb|CBA05441.1| pilus assembly protein PilC [Neisseria meningitidis alpha275]
gi|261391858|emb|CAX49317.1| type IV pilus biogenesis protein PilG [Neisseria meningitidis 8013]
gi|308388541|gb|ADO30861.1| pilus-assembly protein [Neisseria meningitidis alpha710]
gi|316984335|gb|EFV63309.1| pilin biogenesis protein [Neisseria meningitidis H44/76]
gi|319411192|emb|CBY91597.1| type IV pilus biogenesis protein PilG [Neisseria meningitidis WUE
2594]
gi|325128919|gb|EGC51773.1| Bacterial type II secretion system protein F domain protein
[Neisseria meningitidis N1568]
gi|325134914|gb|EGC57546.1| Bacterial type II secretion system protein F domain protein
[Neisseria meningitidis M13399]
gi|325136908|gb|EGC59505.1| Bacterial type II secretion system protein F domain protein
[Neisseria meningitidis M0579]
gi|325140982|gb|EGC63488.1| Bacterial type II secretion system protein F domain protein
[Neisseria meningitidis CU385]
gi|325145128|gb|EGC67410.1| Bacterial type II secretion system protein F domain protein
[Neisseria meningitidis M01-240013]
gi|325199527|gb|ADY94982.1| Bacterial type II secretion system protein F domain protein
[Neisseria meningitidis H44/76]
gi|325202847|gb|ADY98301.1| Bacterial type II secretion system protein F domain protein
[Neisseria meningitidis M01-240149]
gi|325208840|gb|ADZ04292.1| Bacterial type II secretion system protein F domain protein
[Neisseria meningitidis NZ-05/33]
Length = 410
Score = 39.5 bits (91), Expect = 0.65, Method: Composition-based stats.
Identities = 26/157 (16%), Positives = 47/157 (29%), Gaps = 19/157 (12%)
Query: 164 PSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEML 223
P ++ + L +++G+ + QA VA G + ++E ++
Sbjct: 53 PLQITRVKTSSKRKITQEDITVFTRQLSTMIKAGLPLMQAFEIVAR--GHGNPSMTEMLM 110
Query: 224 LTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSER 283
E+ + AF N L+ + G + L L E+
Sbjct: 111 EIRGEVEQGSSLSRAFSNHPKYFD-----RFYCNLVAAGETGGVLESLLDKLA--IYKEK 163
Query: 284 LMEAEKKAASL----------GPKLTVPMIIFFLPVL 310
KK + L M+IF LP
Sbjct: 164 TQAIRKKVKTALTYPVSVIAVAIGLVFVMMIFVLPAF 200
>gi|330909369|gb|EGH37883.1| general secretion pathway protein F [Escherichia coli AA86]
Length = 398
Score = 39.5 bits (91), Expect = 0.66, Method: Composition-based stats.
Identities = 16/150 (10%), Positives = 55/150 (36%), Gaps = 13/150 (8%)
Query: 172 VQKRQSSIKR-AWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELS 230
V+ R+ I L + + ++++L + + + L++ + + +
Sbjct: 49 VKTRRPRISHSELTLFTRQLATLSAAALPLEESLAVIGQ--QSSNKRLADVLNQVRSAIL 106
Query: 231 FLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKK 290
A ++F + + L+++ + L L + + +
Sbjct: 107 EGHPLSDALQHFPTLFD-----SLYRTLVKAGEKSGLLAPVLEKLADYNENRQKIR---- 157
Query: 291 AASLGPKLTVPMIIFFLPVLILVIIGPAIL 320
+ L L P ++ + +++++I+ A++
Sbjct: 158 -SKLIQSLIYPCMLTTVAIVVVIILLTAVV 186
>gi|331649125|ref|ZP_08350211.1| general secretion pathway protein F [Escherichia coli M605]
gi|331041623|gb|EGI13767.1| general secretion pathway protein F [Escherichia coli M605]
Length = 398
Score = 39.5 bits (91), Expect = 0.66, Method: Composition-based stats.
Identities = 16/150 (10%), Positives = 55/150 (36%), Gaps = 13/150 (8%)
Query: 172 VQKRQSSIKR-AWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELS 230
V+ R+ I L + + ++++L + + + L++ + + +
Sbjct: 49 VKTRRPRISHSELTLFTRQLATLSAAALPLEESLAVIGQ--QSSNKRLADVLNQVRSAIL 106
Query: 231 FLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKK 290
A ++F + + L+++ + L L + + +
Sbjct: 107 EGHPLSDALQHFPTLFD-----SLYRTLVKAGEKSGLLAPVLEKLADYNENRQKIR---- 157
Query: 291 AASLGPKLTVPMIIFFLPVLILVIIGPAIL 320
+ L L P ++ + +++++I+ A++
Sbjct: 158 -SKLIQSLIYPCMLTTVAIVVVIILLTAVV 186
>gi|21222912|ref|NP_628691.1| integral membrane protein [Streptomyces coelicolor A3(2)]
gi|7242744|emb|CAB77318.1| putative integral membrane protein [Streptomyces coelicolor A3(2)]
Length = 345
Score = 39.5 bits (91), Expect = 0.66, Method: Composition-based stats.
Identities = 15/90 (16%), Positives = 27/90 (30%), Gaps = 1/90 (1%)
Query: 216 VPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRY-GTSIGDSLRV 274
L + + L A ++ + ALI + R G + L
Sbjct: 154 PVLRPHLDALVDRLRSRTPLPDALQHLADEIDDASADIIVAALILNARLRGPGLRQVLGA 213
Query: 275 LVSETRSERLMEAEKKAASLGPKLTVPMII 304
L R E M A + +V +++
Sbjct: 214 LAKSAREEVDMRQRVMAQRASTRRSVQIVV 243
>gi|227496761|ref|ZP_03927034.1| conserved hypothetical protein [Actinomyces urogenitalis DSM 15434]
gi|226833728|gb|EEH66111.1| conserved hypothetical protein [Actinomyces urogenitalis DSM 15434]
Length = 185
Score = 39.5 bits (91), Expect = 0.67, Method: Composition-based stats.
Identities = 17/58 (29%), Positives = 26/58 (44%)
Query: 265 GTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
G S L + RS R ++ A L +L VP+ + LP I + I P + S+
Sbjct: 121 GASPVPLLAATAASLRSGRQARDQEAAERLAVRLVVPLGLCHLPAFIALGIVPVVASL 178
>gi|228942781|ref|ZP_04105305.1| hypothetical protein bthur0008_54010 [Bacillus thuringiensis
serovar berliner ATCC 10792]
gi|228975710|ref|ZP_04136247.1| hypothetical protein bthur0003_54440 [Bacillus thuringiensis
serovar thuringiensis str. T01001]
gi|228783986|gb|EEM32028.1| hypothetical protein bthur0003_54440 [Bacillus thuringiensis
serovar thuringiensis str. T01001]
gi|228816885|gb|EEM62986.1| hypothetical protein bthur0008_54010 [Bacillus thuringiensis
serovar berliner ATCC 10792]
Length = 308
Score = 39.5 bits (91), Expect = 0.68, Method: Composition-based stats.
Identities = 18/90 (20%), Positives = 35/90 (38%), Gaps = 1/90 (1%)
Query: 106 GFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPS 165
G+RS+ + + + + + I+FLIL I L L +L +G P
Sbjct: 8 GYRSKTAWKMFIASIVYIFILFLILQAIIPNSIRPALVNIGFLGFSLSLLALIIGLIKPQ 67
Query: 166 VWI-SNLVQKRQSSIKRAWPDALDLLLICV 194
+ ++ R+ + AL L+ +
Sbjct: 68 FVLPKIQIKTRKKVVYSYLYLALAFFLMGI 97
>gi|289769864|ref|ZP_06529242.1| integral membrane protein [Streptomyces lividans TK24]
gi|289700063|gb|EFD67492.1| integral membrane protein [Streptomyces lividans TK24]
Length = 330
Score = 39.5 bits (91), Expect = 0.69, Method: Composition-based stats.
Identities = 15/90 (16%), Positives = 27/90 (30%), Gaps = 1/90 (1%)
Query: 216 VPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRY-GTSIGDSLRV 274
L + + L A ++ + ALI + R G + L
Sbjct: 139 PVLRPHLDALVDRLRSRTPLPDALQHLADEIDDASADIIVAALILNARLRGPGLRQVLGA 198
Query: 275 LVSETRSERLMEAEKKAASLGPKLTVPMII 304
L R E M A + +V +++
Sbjct: 199 LAKSAREEVDMRQRVMAQRASTRRSVQIVV 228
>gi|281180362|dbj|BAI56692.1| general secretion pathway protein F [Escherichia coli SE15]
Length = 398
Score = 39.5 bits (91), Expect = 0.70, Method: Composition-based stats.
Identities = 16/150 (10%), Positives = 55/150 (36%), Gaps = 13/150 (8%)
Query: 172 VQKRQSSIKR-AWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELS 230
V+ R+ I L + + ++++L + + + L++ + + +
Sbjct: 49 VKTRRPRISHSELTLFTRQLATLSAAALPLEESLAVIGQ--QSSNKRLADVLNQVRSAIL 106
Query: 231 FLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKK 290
A ++F + + L+++ + L L + + +
Sbjct: 107 EGHPLSDALQHFPTLFD-----SLYRTLVKAGEKSGLLAPVLEKLADYNENRQKIR---- 157
Query: 291 AASLGPKLTVPMIIFFLPVLILVIIGPAIL 320
+ L L P ++ + +++++I+ A++
Sbjct: 158 -SKLIQSLIYPCMLTTVAIVVVIILLTAVV 186
>gi|317123680|ref|YP_004097792.1| type II secretion system F domain [Intrasporangium calvum DSM
43043]
gi|315587768|gb|ADU47065.1| Type II secretion system F domain [Intrasporangium calvum DSM
43043]
Length = 266
Score = 39.5 bits (91), Expect = 0.71, Method: Composition-based stats.
Identities = 24/126 (19%), Positives = 51/126 (40%), Gaps = 2/126 (1%)
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELS-FLPNRQVAFENFYN 244
L+ + +E+G++ A+R + PL+ ++ + E S + + ++
Sbjct: 80 LLEGVAPALEAGLTPSVAVRLSGATLRSSIDPLTARLVAELTETSERGAHVAPVWRSWAG 139
Query: 245 RTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMII 304
+ +R A S+ G + D++R V+ R A GP+ TV ++
Sbjct: 140 AEGSEELRFVAAAWQLSEVTGAPLADAVRRAVASVHQARERARRVHVAVAGPRATVV-VL 198
Query: 305 FFLPVL 310
LP+
Sbjct: 199 TVLPLT 204
>gi|256785972|ref|ZP_05524403.1| integral membrane protein [Streptomyces lividans TK24]
Length = 347
Score = 39.5 bits (91), Expect = 0.71, Method: Composition-based stats.
Identities = 15/90 (16%), Positives = 27/90 (30%), Gaps = 1/90 (1%)
Query: 216 VPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRY-GTSIGDSLRV 274
L + + L A ++ + ALI + R G + L
Sbjct: 156 PVLRPHLDALVDRLRSRTPLPDALQHLADEIDDASADIIVAALILNARLRGPGLRQVLGA 215
Query: 275 LVSETRSERLMEAEKKAASLGPKLTVPMII 304
L R E M A + +V +++
Sbjct: 216 LAKSAREEVDMRQRVMAQRASTRRSVQIVV 245
>gi|146296096|ref|YP_001179867.1| type II secretion system protein [Caldicellulosiruptor
saccharolyticus DSM 8903]
gi|145409672|gb|ABP66676.1| type II secretion system protein [Caldicellulosiruptor
saccharolyticus DSM 8903]
Length = 403
Score = 39.5 bits (91), Expect = 0.71, Method: Composition-based stats.
Identities = 22/156 (14%), Positives = 54/156 (34%), Gaps = 8/156 (5%)
Query: 172 VQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSF 231
VQ R+ + + +GI + AL +AE G+ + + ++
Sbjct: 54 VQLRKKIPIKDLAVFCRQFATMLMAGIPMVSALDVIAEQFKGRY--FGKVLEDIHKKVQS 111
Query: 232 LPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKA 291
A +C +I++ S+ +L + + E + +
Sbjct: 112 GSMLSRALAEKA-----ECFPPILINMIEAGEMSGSVDQALDRMATHFEKELKLRQKIIN 166
Query: 292 ASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
A + P + + + I L +++ ++ P + I +
Sbjct: 167 ALIYPAIVILVAIGVLIIMLTFVV-PTFVGIFSELN 201
>gi|269795082|ref|YP_003314537.1| type II secretory pathway, component PulF [Sanguibacter keddieii
DSM 10542]
gi|269097267|gb|ACZ21703.1| type II secretory pathway, component PulF [Sanguibacter keddieii
DSM 10542]
Length = 416
Score = 39.5 bits (91), Expect = 0.74, Method: Composition-based stats.
Identities = 22/152 (14%), Positives = 59/152 (38%), Gaps = 16/152 (10%)
Query: 182 AWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFEN 241
+ V +G+S+ + L +A+ ++ PL++ + + +++ + A
Sbjct: 78 DLAIMARQMATMVSAGLSLIRTLGILAD--QTENKPLAKVLGIVRSDVETGLSLSNALVK 135
Query: 242 FYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVP 301
V ++++ G + SL +E + A+ K+A +T P
Sbjct: 136 HPEAFPPIMVN-----IVRAGETGGFLEKSLLSAADNFEAEVKLRAKVKSA-----MTYP 185
Query: 302 MIIFFLPVL----ILVIIGPAILSIIDTMKDH 329
+++ F+ + +L+ I P + + +
Sbjct: 186 VVVLFIAIAAVIGMLLFIVPIFKDMFEGLGGE 217
>gi|253576053|ref|ZP_04853386.1| predicted protein [Paenibacillus sp. oral taxon 786 str. D14]
gi|251844628|gb|EES72643.1| predicted protein [Paenibacillus sp. oral taxon 786 str. D14]
Length = 288
Score = 39.5 bits (91), Expect = 0.74, Method: Composition-based stats.
Identities = 27/212 (12%), Positives = 70/212 (33%), Gaps = 23/212 (10%)
Query: 108 RSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVW 167
+ ++ L R ++ +G+I + F + L + F P
Sbjct: 44 KEAETVGWSLTFREFAFLVMFSVGLIGLIAL-------FTGNYFFIALGAVLSFTLPRTI 96
Query: 168 ISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIA 227
+ + +K + ++ P L L + + ++ +AL D+ G + P+
Sbjct: 97 VLKVKRKIRQNVLFDLPSNLRLFISKLTDFPNVQKALENAVLDMDGVTKPI---FEKASN 153
Query: 228 ELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYG------TSIGDSLRVLVSETRS 281
+L FE + ++ + + L + G S+ +++ + +
Sbjct: 154 QLRVGLPIDRVFEEMLSELKIRKMEDFLDKLRMAQMEGFHPQSLDSLKETVDEIGEDITQ 213
Query: 282 ERLMEAEKKAASLG-------PKLTVPMIIFF 306
+ ++ E K+ + M+ F
Sbjct: 214 IQELDIEAKSKRKQLFTVIGMAWMMPVMMSFM 245
>gi|325130912|gb|EGC53641.1| Bacterial type II secretion system protein F domain protein
[Neisseria meningitidis OX99.30304]
gi|325198977|gb|ADY94433.1| Bacterial type II secretion system protein F domain protein
[Neisseria meningitidis G2136]
gi|325203446|gb|ADY98899.1| Bacterial type II secretion system protein F domain protein
[Neisseria meningitidis M01-240355]
gi|325205410|gb|ADZ00863.1| Bacterial type II secretion system protein F domain protein
[Neisseria meningitidis M04-240196]
Length = 402
Score = 39.5 bits (91), Expect = 0.76, Method: Composition-based stats.
Identities = 26/157 (16%), Positives = 47/157 (29%), Gaps = 19/157 (12%)
Query: 164 PSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEML 223
P ++ + L +++G+ + QA VA G + ++E ++
Sbjct: 45 PLQITRVKTSSKRKITQEDITVFTRQLSTMIKAGLPLMQAFEIVAR--GHGNPSMTEMLM 102
Query: 224 LTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSER 283
E+ + AF N L+ + G + L L E+
Sbjct: 103 EIRGEVEQGSSLSRAFSNHPKYFD-----RFYCNLVAAGETGGVLESLLDKLA--IYKEK 155
Query: 284 LMEAEKKAASL----------GPKLTVPMIIFFLPVL 310
KK + L M+IF LP
Sbjct: 156 TQAIRKKVKTALTYPVSVIAVAIGLVFVMMIFVLPAF 192
>gi|152967731|ref|YP_001363515.1| type II secretion system protein [Kineococcus radiotolerans
SRS30216]
gi|151362248|gb|ABS05251.1| type II secretion system protein [Kineococcus radiotolerans
SRS30216]
Length = 286
Score = 39.5 bits (91), Expect = 0.76, Method: Composition-based stats.
Identities = 31/195 (15%), Positives = 58/195 (29%), Gaps = 17/195 (8%)
Query: 98 IVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIG 157
+ L AAG R + +P+ L+ G++ +
Sbjct: 38 VRELLDAAGMREVPAP--------ALPLACLLAGLVSAVAVTGIGRVLVLGLAAGTAAAV 89
Query: 158 YVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVP 217
+ + ++R+ WPD +D L V +G S+ +A+ +A S P
Sbjct: 90 LP-----VAAVRSRARRRRQEAAAQWPDVVDTLASAVRAGASLPEAVCALAVRGPRSSRP 144
Query: 218 LSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTS-IGDSLRVLV 276
+ + L + + G S +G +LR L
Sbjct: 145 AFARFAAAHRASGA---FEPELRRLQDELADPVFDRLAATLRMTRQVGGSDLGTTLRTLS 201
Query: 277 SETRSERLMEAEKKA 291
R ++ E A
Sbjct: 202 GYLREDQRTRGELLA 216
>gi|238783391|ref|ZP_04627414.1| Periplasmic chelated iron-binding protein yfeA [Yersinia bercovieri
ATCC 43970]
gi|238715636|gb|EEQ07625.1| Periplasmic chelated iron-binding protein yfeA [Yersinia bercovieri
ATCC 43970]
Length = 340
Score = 39.5 bits (91), Expect = 0.77, Method: Composition-based stats.
Identities = 20/89 (22%), Positives = 28/89 (31%), Gaps = 15/89 (16%)
Query: 208 AEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTS 267
AE I PL E + AEL +L + AF V I +D GT
Sbjct: 208 AEKIAALDAPLRERLSRIPAELRWLVTSEGAFSYLAKDYGFKEVYLWP---INADEQGTP 264
Query: 268 IGDSLRVLVSETRSERLMEAEKKAASLGP 296
+R ++ R A +
Sbjct: 265 --QQVRRVIDTMR----------ANKIPV 281
>gi|300813874|ref|ZP_07094179.1| type II secretion system F domain protein [Peptoniphilus sp. oral
taxon 836 str. F0141]
gi|300512061|gb|EFK39256.1| type II secretion system F domain protein [Peptoniphilus sp. oral
taxon 836 str. F0141]
Length = 389
Score = 39.5 bits (91), Expect = 0.78, Method: Composition-based stats.
Identities = 29/149 (19%), Positives = 61/149 (40%), Gaps = 17/149 (11%)
Query: 180 KRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAF 239
R + L + ++SGI +++AL+ VA++ + + +L +L + A
Sbjct: 58 NRDYYFLFTQLALILKSGIVLEEALKIVADNFNEKKRNI---LLKISQDLHSGISLSQAM 114
Query: 240 ENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLT 299
Q + +L+ +++ R L S +R + K S LT
Sbjct: 115 A------QSKKFTDFIVSLVDVGENSSNLEQVFRKLASFY--KREEKLRKNIYST---LT 163
Query: 300 VPMIIFFLPVLILVIIGPAILSIIDTMKD 328
P+I+ + L++ + +L++I T D
Sbjct: 164 YPIILIIVSALVVNFL---MLNVIPTFAD 189
>gi|258514753|ref|YP_003190975.1| hypothetical protein Dtox_1488 [Desulfotomaculum acetoxidans DSM
771]
gi|257778458|gb|ACV62352.1| hypothetical protein Dtox_1488 [Desulfotomaculum acetoxidans DSM
771]
Length = 309
Score = 39.5 bits (91), Expect = 0.78, Method: Composition-based stats.
Identities = 29/164 (17%), Positives = 54/164 (32%), Gaps = 9/164 (5%)
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
+I F V V + P +I + +I AL
Sbjct: 80 VICAASLAFLAIGASLAILIGNVFLVPVTAVGMMFIPFWYIRLTATHYKKNIASELETAL 139
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFL-PNRQVAFENFYNRT 246
++ + + L V E I + P+ +A++ + P+ A + +
Sbjct: 140 SIITTAY---LRSEDILTAVEESIQYLNPPVRSVFAGFLAQVKLIDPDLDKALHDMKPKI 196
Query: 247 QMDCVRNATQALI--QSDRYGTSIGDSLRVLVSETRSERLMEAE 288
D A+ Q DR S+ +L +VS+ R++ AE
Sbjct: 197 DNDVFHEWCDAIAACQHDR---SLKTTLTPIVSKLSDMRIVNAE 237
>gi|300702980|ref|YP_003744582.1| type IV pilus assembly transmembrane protein [Ralstonia
solanacearum CFBP2957]
gi|299070643|emb|CBJ41938.1| type IV pilus assembly transmembrane protein [Ralstonia
solanacearum CFBP2957]
Length = 421
Score = 39.5 bits (91), Expect = 0.79, Method: Composition-based stats.
Identities = 22/151 (14%), Positives = 51/151 (33%), Gaps = 16/151 (10%)
Query: 169 SNLVQKRQSSIK-RAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIA 227
R I + L +++G+ + Q++ +A G + ++ +
Sbjct: 69 KRRRAARGKKITPKDVAYFTRQLSTMLKAGVPLLQSVDIIAR--GHANPNFTQLLTEIRV 126
Query: 228 ELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEA 287
++ + AF + LI + G + L L ++A
Sbjct: 127 DIESGSSMAQAFRRHPKYFD-----SLYCNLIDAGEQGGILDALLERLSMYMEKSIALKA 181
Query: 288 EKKAA--------SLGPKLTVPMIIFFLPVL 310
+ K+A ++ +TV ++IF +P
Sbjct: 182 QIKSAMIYPISVLTVAFLVTVVLMIFVVPAF 212
>gi|154499691|ref|ZP_02037729.1| hypothetical protein BACCAP_03348 [Bacteroides capillosus ATCC
29799]
gi|150271289|gb|EDM98546.1| hypothetical protein BACCAP_03348 [Bacteroides capillosus ATCC
29799]
Length = 310
Score = 39.5 bits (91), Expect = 0.82, Method: Composition-based stats.
Identities = 28/190 (14%), Positives = 69/190 (36%), Gaps = 18/190 (9%)
Query: 123 VPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRA 182
+ +I +G + + + P ++G AP ++ + + +
Sbjct: 82 LSLILFAVGAVLALLINNVYMVP---------ILGIGFSLAPIWYLRSTAASYKKHLNEE 132
Query: 183 WPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFL-PNRQVAFEN 241
A+ ++ + + +R V E++ + P+ + E + N A +
Sbjct: 133 LETAISIITTSY---LRTEDLIRAVKENLPYINEPVKANFEAFVYEAELINANLTSAINS 189
Query: 242 FYNRTQMDCVRNATQALI--QSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLT 299
+ LI QSDR S+ ++L + + R++++E +A GP+
Sbjct: 190 LKMKVPNRVFHEWCNILIQCQSDR---SMKNTLPTIAQKFSDVRVVQSELEAMMQGPRRE 246
Query: 300 VPMIIFFLPV 309
++F +
Sbjct: 247 AITMMFLVIA 256
>gi|293412746|ref|ZP_06655414.1| general secretion pathway protein F [Escherichia coli B354]
gi|291468393|gb|EFF10886.1| general secretion pathway protein F [Escherichia coli B354]
Length = 398
Score = 39.1 bits (90), Expect = 0.82, Method: Composition-based stats.
Identities = 16/150 (10%), Positives = 55/150 (36%), Gaps = 13/150 (8%)
Query: 172 VQKRQSSIKR-AWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELS 230
V+ R+ I L + + ++++L + + + L++ + + +
Sbjct: 49 VKTRRPRISHSELTLFTRQLATLSAAALPLEESLAVIGQ--QSSNKRLADVLNQVRSAIL 106
Query: 231 FLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKK 290
A ++F + + L+++ + L L + + +
Sbjct: 107 EGHPLSDALQHFPTLFD-----SLYRTLVKAGEKSGLLAPVLEKLADYNENRQKIR---- 157
Query: 291 AASLGPKLTVPMIIFFLPVLILVIIGPAIL 320
+ L L P ++ + +++++I+ A++
Sbjct: 158 -SKLIQSLIYPCMLTAVAIVVVIILLTAVV 186
>gi|282883324|ref|ZP_06291918.1| putative type II secretion system protein F [Peptoniphilus
lacrimalis 315-B]
gi|281296828|gb|EFA89330.1| putative type II secretion system protein F [Peptoniphilus
lacrimalis 315-B]
Length = 389
Score = 39.1 bits (90), Expect = 0.85, Method: Composition-based stats.
Identities = 29/149 (19%), Positives = 61/149 (40%), Gaps = 17/149 (11%)
Query: 180 KRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAF 239
R + L + ++SGI +++AL+ VA++ + + +L +L + A
Sbjct: 58 NRDYYFLFTQLALILKSGIVLEEALKIVADNFNEKKRNI---LLKISQDLHSGISLSQAM 114
Query: 240 ENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLT 299
Q + +L+ +++ R L S +R + K S LT
Sbjct: 115 A------QSKKFTDFIVSLVDVGENSSNLEQVFRKLASFY--KREEKLRKNIYST---LT 163
Query: 300 VPMIIFFLPVLILVIIGPAILSIIDTMKD 328
P+I+ + L++ + +L++I T D
Sbjct: 164 YPIILIIVSALVVNFL---MLNVIPTFAD 189
>gi|266621230|ref|ZP_06114165.1| conserved hypothetical protein [Clostridium hathewayi DSM 13479]
gi|288867073|gb|EFC99371.1| conserved hypothetical protein [Clostridium hathewayi DSM 13479]
Length = 310
Score = 39.1 bits (90), Expect = 0.85, Method: Composition-based stats.
Identities = 22/135 (16%), Positives = 52/135 (38%), Gaps = 4/135 (2%)
Query: 127 FLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGF-CAPSVWISNLVQKRQSSIKRAWPD 185
F ++ ++ + + + ++ ++ + GF P ++ K++ I
Sbjct: 78 FSMICVLSMMLFVAGVLLALSMKNIFMVPVLAAGFPLLPFYYVLFTASKQKKQINGELET 137
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFL-PNRQVAFENFYN 244
AL ++ + + LR V E++ + P+SE + E + N + A E
Sbjct: 138 ALSMITSSYM--RNKNTFLRAVEENLPYLNPPVSEVFRDFLMESKLIHSNLKEALEKLKL 195
Query: 245 RTQMDCVRNATQALI 259
D + +A+I
Sbjct: 196 AIDSDVFQEWVEAVI 210
>gi|229180826|ref|ZP_04308163.1| hypothetical protein bcere0005_41690 [Bacillus cereus 172560W]
gi|228602663|gb|EEK60147.1| hypothetical protein bcere0005_41690 [Bacillus cereus 172560W]
Length = 308
Score = 39.1 bits (90), Expect = 0.85, Method: Composition-based stats.
Identities = 15/79 (18%), Positives = 30/79 (37%), Gaps = 1/79 (1%)
Query: 106 GFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPS 165
G+RS+ + + + + + I+FLIL I L L +L +G P
Sbjct: 8 GYRSKTAWKMFIASIVYIFILFLILQAIIPNSIRPALVNIGFLGFSLSLLALIIGLIKPQ 67
Query: 166 VWI-SNLVQKRQSSIKRAW 183
+ ++ R+ +
Sbjct: 68 FVLPKIQIKTRKKVVYSYL 86
>gi|148651967|ref|YP_001279060.1| type II secretion system protein [Psychrobacter sp. PRwf-1]
gi|148571051|gb|ABQ93110.1| type II secretion system protein [Psychrobacter sp. PRwf-1]
Length = 410
Score = 39.1 bits (90), Expect = 0.86, Method: Composition-based stats.
Identities = 22/157 (14%), Positives = 58/157 (36%), Gaps = 9/157 (5%)
Query: 174 KRQSSI-KRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFL 232
+RQ I + L ++G+ I QA +A+ + + +L +L
Sbjct: 62 RRQKKITALDISLFVRQLATMTKAGVPIVQAFELIAQ--ALDKPSMKQLVLRVKQQLETG 119
Query: 233 PNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAA 292
+ + + + + ++ GT D+L +++ + + K
Sbjct: 120 MSLEDSLRAHPKQFD----DLFCALVSAAEHSGT--LDTLLERIADYKENNELLKIKLKK 173
Query: 293 SLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMKDH 329
++ L V ++ + +++L+ + P + D+M
Sbjct: 174 AIKYPLAVMLVAMIVSIILLLKVVPVFADLYDSMGSQ 210
>gi|331684969|ref|ZP_08385555.1| general secretion pathway protein F [Escherichia coli H299]
gi|331077340|gb|EGI48552.1| general secretion pathway protein F [Escherichia coli H299]
Length = 398
Score = 39.1 bits (90), Expect = 0.87, Method: Composition-based stats.
Identities = 16/150 (10%), Positives = 55/150 (36%), Gaps = 13/150 (8%)
Query: 172 VQKRQSSIKR-AWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELS 230
V+ R+ I L + + ++++L + + + L++ + + +
Sbjct: 49 VKTRRPRISHSELTLFTRQLATLSAAALPLEESLAVIGQ--QSSNKRLADVLNQVRSAIL 106
Query: 231 FLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKK 290
A ++F + + L+++ + L L + + +
Sbjct: 107 EGHPLSDALQHFPTLFD-----SLYRTLVKAGEKSGLLAPVLEKLADYNENRQKIR---- 157
Query: 291 AASLGPKLTVPMIIFFLPVLILVIIGPAIL 320
+ L L P ++ + +++++I+ A++
Sbjct: 158 -SKLIQSLIYPCMLTAVAIVVVIILLTAVV 186
>gi|167628705|ref|YP_001679204.1| hypothetical protein HM1_0588 [Heliobacterium modesticaldum Ice1]
gi|167591445|gb|ABZ83193.1| hypothetical protein HM1_0588 [Heliobacterium modesticaldum Ice1]
Length = 309
Score = 39.1 bits (90), Expect = 0.87, Method: Composition-based stats.
Identities = 31/223 (13%), Positives = 76/223 (34%), Gaps = 23/223 (10%)
Query: 67 SASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPII 126
S +R +++++ + IL ++I+ +G ++ ++
Sbjct: 37 RRSRGIRDEINEAVKRKKPSFLRREILEAQDILALTGRSG--------RFPLICASSLLL 88
Query: 127 FLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDA 186
F I I + L L + P ++ + +I A
Sbjct: 89 FAAGASIAILLQNVFLIPVLALGLM----------FLPFWYVRLTAAHYRKNIAAELETA 138
Query: 187 LDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFL-PNRQVAFENFYNR 245
L ++ + + L V E+I + P+ + ++ + P+ A + R
Sbjct: 139 LSIITTAY---LRNEDILTAVEENIHYLNPPVRGVFAQFLTQIKLINPDVNAALKAMKPR 195
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAE 288
+ + A+ + +Y S+ +L +V + R++ AE
Sbjct: 196 IENEVFHEWCDAIA-ACQYDRSLKTTLTPIVGKLSDMRIVNAE 237
>gi|331674828|ref|ZP_08375585.1| general secretion pathway protein F [Escherichia coli TA280]
gi|331067737|gb|EGI39135.1| general secretion pathway protein F [Escherichia coli TA280]
Length = 398
Score = 39.1 bits (90), Expect = 0.87, Method: Composition-based stats.
Identities = 16/150 (10%), Positives = 55/150 (36%), Gaps = 13/150 (8%)
Query: 172 VQKRQSSIKR-AWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELS 230
V+ R+ I L + + ++++L + + + L++ + + +
Sbjct: 49 VKTRRPRISHSELTLFTRQLATLSAAALPLEESLAVIGQ--QSSNKRLADVLNQVRSAIL 106
Query: 231 FLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKK 290
A ++F + + L+++ + L L + + +
Sbjct: 107 EGHPLSDALQHFPTLFD-----SLYRTLVKAGEKSGLLAPVLEKLADYNENRQKIR---- 157
Query: 291 AASLGPKLTVPMIIFFLPVLILVIIGPAIL 320
+ L L P ++ + +++++I+ A++
Sbjct: 158 -SKLIQSLIYPCMLTAVAIVVVIILLTAVV 186
>gi|219852457|ref|YP_002466889.1| flagellar assembly protein J [Methanosphaerula palustris E1-9c]
gi|219546716|gb|ACL17166.1| type II secretion system protein [Methanosphaerula palustris E1-9c]
Length = 545
Score = 39.1 bits (90), Expect = 0.87, Method: Composition-based stats.
Identities = 37/228 (16%), Positives = 90/228 (39%), Gaps = 23/228 (10%)
Query: 107 FRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCA-PS 165
+RS+ ++I + R++VP++ +I I+ FG + A + ++G P
Sbjct: 225 WRSKEQISIRKIERIMVPLVAVISLIMVAFGVN------------AGFVCLFIGLMMGPL 272
Query: 166 VWISNLVQKRQSSIKRAWPDALDLL-LICVESGISIDQALRRVAEDIGGQSVPLSEEMLL 224
I + S + + L + G ++ AL +V + PL +
Sbjct: 273 GIIGYIDDTNISQRDDDFSIFIRSLGSVMEGQGATLPIALDQVDKKSLIALEPL---VRS 329
Query: 225 TIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERL 284
++++ + + +E F + + + + G G+ +V+ + ++ L
Sbjct: 330 VHSKMNLGLDEEQIWERFIGESGSNLIYKYLNIFRDTVATGGPAGEIGKVVGNSMQNMVL 389
Query: 285 MEAEK-KAASLGPKLTVP---MIIFFLPVLI--LVIIGPAILSIIDTM 326
+ ++ A L +P M++ L L ++ + AI S+++
Sbjct: 390 LRQKRDMLAKSFIILLIPMHVMMVGILVALFDIMLTLTTAITSMMNKF 437
>gi|256810974|ref|YP_003128343.1| Type II secretion system F domain protein [Methanocaldococcus
fervens AG86]
gi|256794174|gb|ACV24843.1| Type II secretion system F domain protein [Methanocaldococcus
fervens AG86]
Length = 344
Score = 39.1 bits (90), Expect = 0.90, Method: Composition-based stats.
Identities = 30/183 (16%), Positives = 71/183 (38%), Gaps = 14/183 (7%)
Query: 99 VNKLRAAGFRSE-YSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIG 157
N LR+ G+ +E +++ ++V I+ LILGI+ D + + I +
Sbjct: 98 RNLLRSIGYENEIEYFKRVILYMIIVFIVLLILGIL-----DGNILGGLFKGIFGAISVL 152
Query: 158 YVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVP 217
+ P + + ++ + + + +L +G S+ + L +++ +
Sbjct: 153 VLSIFYPKIRLIMFKEEVKLQVLFTLLYMVSIL----RAGASLPEILETISK--SNEYGF 206
Query: 218 LSEEMLLTIAELS-FLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLV 276
+S E I +++ A E RT++ ++ +I G ++ L L
Sbjct: 207 ISFEARSIIRDVNVSGYTLVEALERAKLRTEIPLLKKLYDQMIIGYNKG-NLSMLLEKLY 265
Query: 277 SET 279
+
Sbjct: 266 EDI 268
>gi|300690359|ref|YP_003751354.1| type IV pilus assembly transmembrane protein [Ralstonia
solanacearum PSI07]
gi|299077419|emb|CBJ50045.1| type IV pilus assembly transmembrane protein [Ralstonia
solanacearum PSI07]
Length = 421
Score = 39.1 bits (90), Expect = 0.91, Method: Composition-based stats.
Identities = 22/151 (14%), Positives = 51/151 (33%), Gaps = 16/151 (10%)
Query: 169 SNLVQKRQSSIK-RAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIA 227
R I + L +++G+ + Q++ +A G + ++ +
Sbjct: 69 KRRRAARGKKITPKDIAYFTRQLSTMLKAGVPLLQSVDIIAR--GHANPNFTQLLTEIRV 126
Query: 228 ELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEA 287
++ + AF + LI + G + L L ++A
Sbjct: 127 DIESGSSMAQAFRRHPKYFD-----SLYCNLIDAGEQGGILDALLERLSLYMEKSIALKA 181
Query: 288 EKKAA--------SLGPKLTVPMIIFFLPVL 310
+ K+A ++ +TV ++IF +P
Sbjct: 182 QIKSAMIYPISVLTVAFLVTVVLMIFVVPAF 212
>gi|257792954|ref|YP_003186353.1| hypothetical protein Aaci_2961 [Alicyclobacillus acidocaldarius
subsp. acidocaldarius DSM 446]
gi|257479646|gb|ACV59964.1| hypothetical protein Aaci_2961 [Alicyclobacillus acidocaldarius
subsp. acidocaldarius DSM 446]
Length = 281
Score = 39.1 bits (90), Expect = 0.92, Method: Composition-based stats.
Identities = 41/251 (16%), Positives = 98/251 (39%), Gaps = 22/251 (8%)
Query: 64 QKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVV 123
+ +RTR + + K+ ++ L DE +V+ LR +G +R+ +
Sbjct: 20 AGQGEYAGIRTRARIAAGWYGAKMRVRKRLEDEQLVSLLRKSGL--TLKAYQYHYLRIGL 77
Query: 124 PIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPS-VWISNLVQKRQSSIKRA 182
++FL++G++ LL + +++ + + P ++ L ++Q++++R
Sbjct: 78 TLVFLLMGVV------GLLHGRLLPMLFPLVVWFGLEYRRPFPMYYGFLALQKQAALERD 131
Query: 183 WPDALDLLLICVES----G--ISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQ 236
L L+ E+ G + + LRR + LS + + + + +
Sbjct: 132 KALYLLYRLLLQEAVAFRGRPLGVYDMLRRQLHRV----PVLSPFLERCLHDW--VDDPA 185
Query: 237 VAFENFYNRTQMDCVRNATQALIQSDRYGTSIG-DSLRVLVSETRSERLMEAEKKAASLG 295
VA F + + LI+ + G ++ D L+ + R++R+ +
Sbjct: 186 VALRRFGDEVGTSQAKALAHMLIEIEEAGVAVALDVLQTNLERFRADRIAAFRAHLNTRS 245
Query: 296 PKLTVPMIIFF 306
T ++
Sbjct: 246 ILATALTMLGL 256
>gi|29826726|ref|NP_821360.1| integral membrane protein [Streptomyces avermitilis MA-4680]
gi|29603822|dbj|BAC67895.1| putative integral membrane protein [Streptomyces avermitilis
MA-4680]
Length = 309
Score = 39.1 bits (90), Expect = 0.92, Method: Composition-based stats.
Identities = 31/153 (20%), Positives = 51/153 (33%), Gaps = 10/153 (6%)
Query: 151 GAVILIGYVGFCAPSVWISNLVQKRQSSI--KRAWPDALDLLLICVESGISIDQALRRVA 208
GA++ + VG W+ + Q Q I A + L + G+ ++QA+
Sbjct: 80 GALLGVAVVGVP----WLISPAQMAQERIGQLEALSEWTQRLAGLLRLGMGLEQAMI--- 132
Query: 209 EDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDR-YGTS 267
G L+ +++ L A F ALI S G
Sbjct: 133 TSRQGAPDELAPQIVNLSDRLRLGWRPDGALRAFAEELNDVTADKVVAALILSVNDRGPG 192
Query: 268 IGDSLRVLVSETRSERLMEAEKKAASLGPKLTV 300
+ +L L R E + +A P+ TV
Sbjct: 193 LAQALEDLAGTVRDEVAKKRAIEADRAKPRTTV 225
>gi|207721487|ref|YP_002251927.1| fimbrial assembly protein [Ralstonia solanacearum MolK2]
gi|206586647|emb|CAQ17233.1| fimbrial assembly protein [Ralstonia solanacearum MolK2]
Length = 421
Score = 39.1 bits (90), Expect = 0.93, Method: Composition-based stats.
Identities = 22/151 (14%), Positives = 51/151 (33%), Gaps = 16/151 (10%)
Query: 169 SNLVQKRQSSIK-RAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIA 227
R I + L +++G+ + Q++ +A G + ++ +
Sbjct: 69 KRRRAARGKKITPKDVAYFTRQLSTMLKAGVPLLQSVDIIAR--GHANPNFTQLLTEIRV 126
Query: 228 ELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEA 287
++ + AF + LI + G + L L ++A
Sbjct: 127 DIESGSSMAQAFRRHPKYFD-----SLYCNLIDAGEQGGILDALLERLSMYMEKSIALKA 181
Query: 288 EKKAA--------SLGPKLTVPMIIFFLPVL 310
+ K+A ++ +TV ++IF +P
Sbjct: 182 QIKSAMIYPISVLTVAFLVTVVLMIFVVPAF 212
>gi|152964449|ref|YP_001360233.1| type II secretion system protein [Kineococcus radiotolerans
SRS30216]
gi|151358966|gb|ABS01969.1| type II secretion system protein [Kineococcus radiotolerans
SRS30216]
Length = 165
Score = 39.1 bits (90), Expect = 0.93, Method: Composition-based stats.
Identities = 37/148 (25%), Positives = 65/148 (43%), Gaps = 11/148 (7%)
Query: 169 SNLVQKRQSSIKRA----WPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEE--M 222
N + +R+ S++R P LDL+ VE+G+ +AL + + G +EE +
Sbjct: 2 RNRLTQRRGSLRREPPVDVPLVLDLVAAAVEAGLPPGRALEAAVDALAGTG---AEETAL 58
Query: 223 LLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSE 282
+LS+ + + A+ + + + +AL+ S R G L + R+
Sbjct: 59 RRVAVQLSWGSSPEEAWRDLTG--ESERWDELAEALLLSTRTGAPAASLLASAAASARAA 116
Query: 283 RLMEAEKKAASLGPKLTVPMIIFFLPVL 310
R EAE AA L L +P+ + LP
Sbjct: 117 RRWEAEAAAARLSALLVLPLGLCTLPAF 144
>gi|196047891|ref|ZP_03115069.1| conserved hypothetical protein [Bacillus cereus 03BB108]
gi|196021147|gb|EDX59876.1| conserved hypothetical protein [Bacillus cereus 03BB108]
Length = 279
Score = 39.1 bits (90), Expect = 0.95, Method: Composition-based stats.
Identities = 34/206 (16%), Positives = 69/206 (33%), Gaps = 22/206 (10%)
Query: 84 VKKLNLKAILVDENIVNKLRAAGFRSEYS---LNILLVVRLVVPIIFLILGIIWIFGYDK 140
+ +K E + +L FR + +++ P+I + I+ YD
Sbjct: 46 ATRKRIKISTAKEAELKRL----FREANMNLDPTVFYTYKILYPVISVTFLILLGLAYDN 101
Query: 141 LLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISI 200
L + P + ++ + K P+ L + +++ +
Sbjct: 102 KSILILALLAPLT-------YFYPDYNLKRNLKNAKIYRKLELPNYQMPLGVLLQTYTTY 154
Query: 201 DQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQ 260
+ A++R A G P E+M+L EL F+NF + + A+ Q
Sbjct: 155 E-AVKRSATYAGPHIRPFVEDMIL---ELETWQGSTKPFKNFAEKLDIPEAHTFVVAIQQ 210
Query: 261 SDRY----GTSIGDSLRVLVSETRSE 282
+ + G I + + R E
Sbjct: 211 AIKTDPNKGREIIQQQIEVSRKLRDE 236
>gi|307825437|ref|ZP_07655656.1| Type II secretion system F domain protein [Methylobacter
tundripaludum SV96]
gi|307733612|gb|EFO04470.1| Type II secretion system F domain protein [Methylobacter
tundripaludum SV96]
Length = 404
Score = 39.1 bits (90), Expect = 0.97, Method: Composition-based stats.
Identities = 22/138 (15%), Positives = 50/138 (36%), Gaps = 11/138 (7%)
Query: 170 NLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAEL 229
L K+ ++ L +ESG+ +D++L + D+ + +++ + + ++
Sbjct: 53 RLGIKQTKLSQKDIALFTGELATLLESGLPLDKSLLVLI-DLTEDNERVTKLIGRVLEKV 111
Query: 230 SFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEK 289
A E Q +I++ G S+G+ L L R +
Sbjct: 112 KGGATLADALEK-----QSGIFSKFYLNMIRAGEAGGSLGEVLGRLSEYLERSR-----E 161
Query: 290 KAASLGPKLTVPMIIFFL 307
++ L P I+ +
Sbjct: 162 LKETVSTALIYPAILLIM 179
>gi|241760203|ref|ZP_04758299.1| pilin biogenesis protein [Neisseria flavescens SK114]
gi|241319314|gb|EER55779.1| pilin biogenesis protein [Neisseria flavescens SK114]
Length = 413
Score = 39.1 bits (90), Expect = 0.97, Method: Composition-based stats.
Identities = 26/166 (15%), Positives = 56/166 (33%), Gaps = 15/166 (9%)
Query: 168 ISNLVQKRQSSIKRA-WPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTI 226
IS + R+ I + L +++G+ + QA VA G + ++E ++
Sbjct: 59 ISKVKTARKRRITQEDITVFTRQLATMMKAGLPLMQAFEIVAR--GHSNPSMTEMLMQVR 116
Query: 227 AELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLME 286
+++ +F + L+ + G + L L E+
Sbjct: 117 SDVEQGSALGKSFSKYPKYFD-----RFYCNLVSAGESGGVLESLLDKLA--VYKEKTQA 169
Query: 287 AEKKAASL---GPKLTVPMIIFFLPVLILVIIGPAILSIIDTMKDH 329
+KK + + V I +++ V+ PA + M
Sbjct: 170 IKKKVKTALTYPIAIIVVAIALIFIMMMFVL--PAFKEVYANMGAE 213
>gi|309776912|ref|ZP_07671882.1| hypothetical protein HMPREF0983_02494 [Erysipelotrichaceae
bacterium 3_1_53]
gi|308915323|gb|EFP61093.1| hypothetical protein HMPREF0983_02494 [Erysipelotrichaceae
bacterium 3_1_53]
Length = 230
Score = 39.1 bits (90), Expect = 0.97, Method: Composition-based stats.
Identities = 35/213 (16%), Positives = 81/213 (38%), Gaps = 17/213 (7%)
Query: 109 SEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWI 168
S+ N ++R+ + ++ I GI+ KL E + + + + Y G+ P +W+
Sbjct: 20 SQKEQNRYPLIRMGLILLLGITGILMA----KLSETTWLITIVCALCFSYAGYKLPWLWL 75
Query: 169 SNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAE 228
KR + + DA+ + + + S I + + L +++ I +
Sbjct: 76 KLKHNKRCTQMT----DAVIIWVNTIYSLIGENNIYNAITISYESTPEILKKDLEEFIQQ 131
Query: 229 LSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYG--------TSIGDSLRVLVSETR 280
++ + A+ +F + +D ++ L + ++ +L + R
Sbjct: 132 ITLDHADKDAYLHFLSGYDIDGFQDIMMKLYEYRGLSKEKLKYEIAALTKALSKIEKNKR 191
Query: 281 SERLMEAEKKAASLG-PKLTVPMIIFFLPVLIL 312
R A +L +++P + F LIL
Sbjct: 192 ERRYRNELFMADTLTMIMMSIPCMYMFFVSLIL 224
>gi|83749807|ref|ZP_00946779.1| PilC [Ralstonia solanacearum UW551]
gi|207744384|ref|YP_002260776.1| fimbrial assembly protein [Ralstonia solanacearum IPO1609]
gi|83723518|gb|EAP70724.1| PilC [Ralstonia solanacearum UW551]
gi|206595789|emb|CAQ62716.1| fimbrial assembly protein [Ralstonia solanacearum IPO1609]
Length = 421
Score = 39.1 bits (90), Expect = 0.98, Method: Composition-based stats.
Identities = 22/151 (14%), Positives = 51/151 (33%), Gaps = 16/151 (10%)
Query: 169 SNLVQKRQSSIK-RAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIA 227
R I + L +++G+ + Q++ +A G + ++ +
Sbjct: 69 KRRRAARGKKITPKDVAYFTRQLSTMLKAGVPLLQSVDIIAR--GHANPNFTQLLTEIRV 126
Query: 228 ELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEA 287
++ + AF + LI + G + L L ++A
Sbjct: 127 DIESGSSMAQAFRRHPKYFD-----SLYCNLIDAGEQGGILDALLERLSMYMEKSIALKA 181
Query: 288 EKKAA--------SLGPKLTVPMIIFFLPVL 310
+ K+A ++ +TV ++IF +P
Sbjct: 182 QIKSAMIYPISVLTVAFLVTVVLMIFVVPAF 212
>gi|639482|gb|AAA85695.1| PilG [Neisseria meningitidis]
Length = 410
Score = 39.1 bits (90), Expect = 1.0, Method: Composition-based stats.
Identities = 25/157 (15%), Positives = 46/157 (29%), Gaps = 19/157 (12%)
Query: 164 PSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEML 223
P ++ + L + +G+ + QA VA G + ++E ++
Sbjct: 53 PLQITRVKTSSKRKITQEDITVFTRQLSTMINAGLPLMQAFEIVAR--GHGNPSMTEMLM 110
Query: 224 LTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSER 283
++ + AF N L+ + G + L L E+
Sbjct: 111 EIRGQVEQGSSLSRAFSNHPKYFD-----RFYCNLVAAGETGGVLESLLDKLA--IYKEK 163
Query: 284 LMEAEKKAASL----------GPKLTVPMIIFFLPVL 310
KK + L M+IF LP
Sbjct: 164 TQAIRKKVKTALTYPVSVIAVAIGLVFVMMIFVLPAF 200
>gi|302559126|ref|ZP_07311468.1| integral membrane protein [Streptomyces griseoflavus Tu4000]
gi|302476744|gb|EFL39837.1| integral membrane protein [Streptomyces griseoflavus Tu4000]
Length = 319
Score = 39.1 bits (90), Expect = 1.0, Method: Composition-based stats.
Identities = 16/100 (16%), Positives = 29/100 (29%), Gaps = 1/100 (1%)
Query: 216 VPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRY-GTSIGDSLRV 274
L + + L A + + ALI + R G + L
Sbjct: 139 PVLRPHLDALVDRLRSRTPLPEALQQLADEIDDASADIIVAALILNARLRGPGLRQVLGA 198
Query: 275 LVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVI 314
L R E M A + +V +++ +L +
Sbjct: 199 LAKSAREEVDMRQRVMAQRASTRRSVQIVVAVSIAFVLGL 238
>gi|57639984|ref|YP_182462.1| flagellar assembly protein J [Thermococcus kodakarensis KOD1]
gi|57158308|dbj|BAD84238.1| archaeal flagella-related membrane protein J, DUF110 family
[Thermococcus kodakarensis KOD1]
Length = 579
Score = 39.1 bits (90), Expect = 1.0, Method: Composition-based stats.
Identities = 21/153 (13%), Positives = 52/153 (33%), Gaps = 3/153 (1%)
Query: 121 LVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIK 180
+++P + + + + G+ + + + LI V + + + ++ SI
Sbjct: 23 ILLPYLGISAVLFIVIGFITRILPVARSLQVLMFLIPIVLIIYAAAYPYVVADSKKISIN 82
Query: 181 RAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFL-PNRQVAF 239
P + + S + + +A+D ++ E+ ++ L + AF
Sbjct: 83 SKMPYFITYFAVLSTSEMGRSDLVAVLAKDPK--LGAIASELKKVHTIVNKLHLSMPEAF 140
Query: 240 ENFYNRTQMDCVRNATQALIQSDRYGTSIGDSL 272
RT + L S G + + L
Sbjct: 141 RFLARRTPSKMFADFLDRLAYSLDSGVDLKEYL 173
>gi|240103600|ref|YP_002959909.1| flagellar assembly protein J [Thermococcus gammatolerans EJ3]
gi|239911154|gb|ACS34045.1| Flagella-related protein J, type II secretion system protein F
(flaJ) [Thermococcus gammatolerans EJ3]
Length = 576
Score = 38.7 bits (89), Expect = 1.1, Method: Composition-based stats.
Identities = 20/154 (12%), Positives = 48/154 (31%), Gaps = 3/154 (1%)
Query: 120 RLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSI 179
++++P + + + + L + I V +++ ++ SI
Sbjct: 23 KILLPNVVISAVLFIVASIISRLFMLSSALTTMLYAIPVVLLVYAAIYPYIQADSKKISI 82
Query: 180 KRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFL-PNRQVA 238
P + + S + ++ +A D ++ E+ + L + A
Sbjct: 83 NSRIPYFITYFAVLSTSEMGRSDLIKVLASDPK--LGAIASELKKVYIIVDKLHRSMPEA 140
Query: 239 FENFYNRTQMDCVRNATQALIQSDRYGTSIGDSL 272
F RT + L S G + + L
Sbjct: 141 FRFLARRTPSKVFADFLDRLAYSLDSGVDMKEYL 174
>gi|222035036|emb|CAP77779.1| general secretion pathway protein F [Escherichia coli LF82]
gi|312947878|gb|ADR28705.1| general secretory pathway component, cryptic [Escherichia coli
O83:H1 str. NRG 857C]
Length = 398
Score = 38.7 bits (89), Expect = 1.1, Method: Composition-based stats.
Identities = 16/150 (10%), Positives = 55/150 (36%), Gaps = 13/150 (8%)
Query: 172 VQKRQSSIKR-AWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELS 230
V+ R+ I L + + ++++L + + + L++ + + +
Sbjct: 49 VKTRRPRISHSELTLFTRQLATLSAAALPLEESLAVIGQ--QSSNNRLADVLNQVRSAIL 106
Query: 231 FLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKK 290
A ++F + + L+++ + L L + + +
Sbjct: 107 EGHPLSDALQHFPTLFD-----SLYRTLVKAGEKSGLLAPVLEKLADYNENRQKIR---- 157
Query: 291 AASLGPKLTVPMIIFFLPVLILVIIGPAIL 320
+ L L P ++ + +++++I+ A++
Sbjct: 158 -SKLIQSLIYPCMLTTVAIVVVIILLTAVV 186
>gi|121534460|ref|ZP_01666283.1| type II secretion system protein [Thermosinus carboxydivorans Nor1]
gi|121306953|gb|EAX47872.1| type II secretion system protein [Thermosinus carboxydivorans Nor1]
Length = 407
Score = 38.7 bits (89), Expect = 1.1, Method: Composition-based stats.
Identities = 19/159 (11%), Positives = 54/159 (33%), Gaps = 8/159 (5%)
Query: 169 SNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAE 228
+L+ + + +++G+ + L + + + L + +
Sbjct: 53 HSLINMVRRVTVKDLAVFCRQFATMIDAGLPLLNCLSILID--QTYNPKLKSAVQDVYRK 110
Query: 229 LSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAE 288
+ A N + V ++++ G + + L L E + +
Sbjct: 111 VQEGETLSRALGNHPQVFPVIMVS-----MVEAGELGGVLDEVLNRLAVHFEKEHKLNEK 165
Query: 289 KKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
K+A + P + + M + IL + P +++ + +K
Sbjct: 166 VKSALVYPAVVIAMAALSV-TFILTFVFPTFMTLFNNLK 203
>gi|254172381|ref|ZP_04879056.1| flagellar accessory protein FabJ [Thermococcus sp. AM4]
gi|214033310|gb|EEB74137.1| flagellar accessory protein FabJ [Thermococcus sp. AM4]
Length = 576
Score = 38.7 bits (89), Expect = 1.1, Method: Composition-based stats.
Identities = 20/154 (12%), Positives = 48/154 (31%), Gaps = 3/154 (1%)
Query: 120 RLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSI 179
++++P + + + + L + I V +++ ++ SI
Sbjct: 23 KILIPNVVISAVLFIVASIISRLFMLSSALTMMLYAIPVVLLIYAALYPYIQADSKKISI 82
Query: 180 KRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFL-PNRQVA 238
P + + S + ++ +A D ++ E+ + L + A
Sbjct: 83 NSRIPYFITYFAVLSTSEMGRADLIKVLASDPK--LGAIASELKKVYIIVDKLHRSMPEA 140
Query: 239 FENFYNRTQMDCVRNATQALIQSDRYGTSIGDSL 272
F RT + L S G + + L
Sbjct: 141 FRFLARRTPSKVFADFLDRLAYSLDSGVDMKEYL 174
>gi|15789509|ref|NP_279333.1| hypothetical protein VNG0203C [Halobacterium sp. NRC-1]
gi|169235227|ref|YP_001688427.1| transmembrane protein (homolog 4 to type II secretion system
proteins tadC) (nonfunctional, C-terminal part)
[Halobacterium salinarum R1]
gi|10579849|gb|AAG18813.1| conserved hypothetical protein [Halobacterium sp. NRC-1]
gi|167726293|emb|CAP13074.1| transmembrane protein (homolog 4 to type II secretion system
proteins tadC) (nonfunctional, C-terminal part)
[Halobacterium salinarum R1]
Length = 287
Score = 38.7 bits (89), Expect = 1.1, Method: Composition-based stats.
Identities = 21/119 (17%), Positives = 42/119 (35%), Gaps = 6/119 (5%)
Query: 153 VILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAE--D 210
+L+GYV F P ++ + + R + + V G A+ RVA D
Sbjct: 37 AVLMGYVAFALPVGAVAARRARIDDAKDRELQAFVHAVAGHVGLGRPFGGAVSRVARGVD 96
Query: 211 IGGQSVPLSEEMLLTIAEL---SFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGT 266
+G + + +++ + +A R+ A F R + + G+
Sbjct: 97 LGALNPDV-DDLAVALAATTTPRAGGVRRAALAGFVERVDTQLAAQTVGLVSGALDAGS 154
>gi|261379321|ref|ZP_05983894.1| 3-isopropylmalate dehydrogenase [Neisseria subflava NJ9703]
gi|284797758|gb|EFC53105.1| 3-isopropylmalate dehydrogenase [Neisseria subflava NJ9703]
Length = 413
Score = 38.7 bits (89), Expect = 1.1, Method: Composition-based stats.
Identities = 26/166 (15%), Positives = 56/166 (33%), Gaps = 15/166 (9%)
Query: 168 ISNLVQKRQSSIKRA-WPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTI 226
IS + R+ I + L +++G+ + QA VA G + ++E ++
Sbjct: 59 ISKVKTARKRRITQEDITVFTRQLATMMKAGLPLMQAFEIVAR--GHSNPSMTEMLMQVR 116
Query: 227 AELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLME 286
+++ +F + L+ + G + L L E+
Sbjct: 117 SDVEQGSALGKSFSKYPKYFD-----RFYCNLVSAGESGGVLESLLDKLA--VYKEKTQA 169
Query: 287 AEKKAASL---GPKLTVPMIIFFLPVLILVIIGPAILSIIDTMKDH 329
+KK + + V I +++ V+ PA + M
Sbjct: 170 IKKKVKTALTYPIAIIVVAIALIFIMMMFVL--PAFKEVYANMGAE 213
>gi|84496010|ref|ZP_00994864.1| putative integral membrane protein [Janibacter sp. HTCC2649]
gi|84382778|gb|EAP98659.1| putative integral membrane protein [Janibacter sp. HTCC2649]
Length = 288
Score = 38.7 bits (89), Expect = 1.1, Method: Composition-based stats.
Identities = 20/127 (15%), Positives = 41/127 (32%), Gaps = 4/127 (3%)
Query: 190 LLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMD 249
L + +G+ ++QAL + P+ E+ + L + A F +
Sbjct: 111 LSGVLTAGVGLEQALI---ATLRSTPDPIRPEVTRLASRLRARWTTEDALRAFADDLDDA 167
Query: 250 CVRNATQALIQ-SDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP 308
LI + R G + L L ++ E +A P+ T +
Sbjct: 168 TGDVVAANLILGARRRGAGLASVLDALAESVAADVRARREIEADRAKPRATARWVTLITI 227
Query: 309 VLILVII 315
++ +
Sbjct: 228 SVLAFLA 234
>gi|59801994|ref|YP_208706.1| PilG [Neisseria gonorrhoeae FA 1090]
gi|194099551|ref|YP_002002681.1| PilG [Neisseria gonorrhoeae NCCP11945]
gi|239999756|ref|ZP_04719680.1| PilG [Neisseria gonorrhoeae 35/02]
gi|240014913|ref|ZP_04721826.1| PilG [Neisseria gonorrhoeae DGI18]
gi|240017361|ref|ZP_04723901.1| PilG [Neisseria gonorrhoeae FA6140]
gi|240081504|ref|ZP_04726047.1| PilG [Neisseria gonorrhoeae FA19]
gi|240113783|ref|ZP_04728273.1| PilG [Neisseria gonorrhoeae MS11]
gi|240116517|ref|ZP_04730579.1| PilG [Neisseria gonorrhoeae PID18]
gi|240118741|ref|ZP_04732803.1| PilG [Neisseria gonorrhoeae PID1]
gi|240121983|ref|ZP_04734945.1| PilG [Neisseria gonorrhoeae PID24-1]
gi|240124280|ref|ZP_04737236.1| PilG [Neisseria gonorrhoeae PID332]
gi|240126491|ref|ZP_04739377.1| PilG [Neisseria gonorrhoeae SK-92-679]
gi|240128954|ref|ZP_04741615.1| PilG [Neisseria gonorrhoeae SK-93-1035]
gi|254494543|ref|ZP_05107714.1| pilus-assembly protein [Neisseria gonorrhoeae 1291]
gi|260439726|ref|ZP_05793542.1| PilG [Neisseria gonorrhoeae DGI2]
gi|268595569|ref|ZP_06129736.1| pilus assembly protein pilG [Neisseria gonorrhoeae 35/02]
gi|268597604|ref|ZP_06131771.1| pilus assembly protein pilG [Neisseria gonorrhoeae FA19]
gi|268599855|ref|ZP_06134022.1| type IV pilus assembly protein [Neisseria gonorrhoeae MS11]
gi|268602190|ref|ZP_06136357.1| type IV pilus assembly protein [Neisseria gonorrhoeae PID18]
gi|268604455|ref|ZP_06138622.1| type IV pilus assembly protein [Neisseria gonorrhoeae PID1]
gi|268682909|ref|ZP_06149771.1| type IV pilus assembly protein [Neisseria gonorrhoeae PID332]
gi|268685075|ref|ZP_06151937.1| type IV pilus assembly protein [Neisseria gonorrhoeae SK-92-679]
gi|268687339|ref|ZP_06154201.1| pilus-assembly protein [Neisseria gonorrhoeae SK-93-1035]
gi|291042974|ref|ZP_06568712.1| pilus assembly protein pilG [Neisseria gonorrhoeae DGI2]
gi|293398318|ref|ZP_06642509.1| type IV pilus assembly protein PilC [Neisseria gonorrhoeae F62]
gi|639480|gb|AAC43469.1| PilG [Neisseria gonorrhoeae]
gi|59718889|gb|AAW90294.1| pilus assembly protein [Neisseria gonorrhoeae FA 1090]
gi|193934841|gb|ACF30665.1| PilG [Neisseria gonorrhoeae NCCP11945]
gi|226513583|gb|EEH62928.1| pilus-assembly protein [Neisseria gonorrhoeae 1291]
gi|268548958|gb|EEZ44376.1| pilus assembly protein pilG [Neisseria gonorrhoeae 35/02]
gi|268551392|gb|EEZ46411.1| pilus assembly protein pilG [Neisseria gonorrhoeae FA19]
gi|268583986|gb|EEZ48662.1| type IV pilus assembly protein [Neisseria gonorrhoeae MS11]
gi|268586321|gb|EEZ50997.1| type IV pilus assembly protein [Neisseria gonorrhoeae PID18]
gi|268588586|gb|EEZ53262.1| type IV pilus assembly protein [Neisseria gonorrhoeae PID1]
gi|268623193|gb|EEZ55593.1| type IV pilus assembly protein [Neisseria gonorrhoeae PID332]
gi|268625359|gb|EEZ57759.1| type IV pilus assembly protein [Neisseria gonorrhoeae SK-92-679]
gi|268627623|gb|EEZ60023.1| pilus-assembly protein [Neisseria gonorrhoeae SK-93-1035]
gi|291013113|gb|EFE05082.1| pilus assembly protein pilG [Neisseria gonorrhoeae DGI2]
gi|291611242|gb|EFF40326.1| type IV pilus assembly protein PilC [Neisseria gonorrhoeae F62]
gi|317165047|gb|ADV08588.1| PilG [Neisseria gonorrhoeae TCDC-NG08107]
Length = 410
Score = 38.7 bits (89), Expect = 1.1, Method: Composition-based stats.
Identities = 25/157 (15%), Positives = 47/157 (29%), Gaps = 19/157 (12%)
Query: 164 PSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEML 223
P ++ + L +++G+ + QA VA G + ++E ++
Sbjct: 53 PLQITRVKTSSKRKITQEDITVFTRQLSTMIKAGLPLMQAFEIVAR--GHGNPSMTEMLM 110
Query: 224 LTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSER 283
++ + AF N L+ + G + L L E+
Sbjct: 111 EIRGQVEQGSSLSRAFSNHPKYFD-----RFYCNLVAAGETGGVLESLLDKLA--IYKEK 163
Query: 284 LMEAEKKAASL----------GPKLTVPMIIFFLPVL 310
KK + L M+IF LP
Sbjct: 164 TQAIRKKVKTALTYPVSVIAVAIGLVFVMMIFVLPAF 200
>gi|313835750|gb|EFS73464.1| type II secretion system F domain protein [Propionibacterium acnes
HL037PA2]
gi|314928423|gb|EFS92254.1| type II secretion system F domain protein [Propionibacterium acnes
HL044PA1]
gi|314970120|gb|EFT14218.1| type II secretion system F domain protein [Propionibacterium acnes
HL037PA3]
gi|328906759|gb|EGG26531.1| type II secretion system F domain protein [Propionibacterium sp.
P08]
Length = 147
Score = 38.7 bits (89), Expect = 1.1, Method: Composition-based stats.
Identities = 29/154 (18%), Positives = 60/154 (38%), Gaps = 23/154 (14%)
Query: 176 QSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNR 235
+ P+ L +L +E+G+ + A+ VAE + G P +E++ + L+
Sbjct: 2 KQRRAAQLPETLLMLSSTMEAGLPLRAAVTTVAESLEG---PCAEDLRRLASALAAGVPD 58
Query: 236 QVAFENFYN----RTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKA 291
A+ + R V A + G I + L ++ + +AEKKA
Sbjct: 59 SKAWNDLAAVTVWRDPAQDVSRAVDS-------GEGISELLSAHAAQLQVAAAEKAEKKA 111
Query: 292 ASLGPKLTVPM---------IIFFLPVLILVIIG 316
G P+ ++ +P++ +++G
Sbjct: 112 RKAGVDAIGPLGCCHLPAFLLVGVVPIIAGMVLG 145
>gi|14590458|ref|NP_142526.1| flagellar assembly protein J [Pyrococcus horikoshii OT3]
gi|3256965|dbj|BAA29648.1| 573aa long hypothetical protein [Pyrococcus horikoshii OT3]
Length = 573
Score = 38.7 bits (89), Expect = 1.1, Method: Composition-based stats.
Identities = 25/153 (16%), Positives = 50/153 (32%), Gaps = 4/153 (2%)
Query: 121 LVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIK 180
L+ + + + + + +L+ P L ++ + + + ++ SI
Sbjct: 28 LIPGLAGSGILFLVMGFFTRLITLPRGLVFFMYLVPAIIAVYV-AAYPYLAADSKRLSIN 86
Query: 181 RAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFL-PNRQVAF 239
P + + S I LR +A+D ++ EM + L + AF
Sbjct: 87 SKLPYFITYFAVLSTSEIGRTDILRVLAKDPK--LGAIANEMKKVYIIVDKLHRSLPEAF 144
Query: 240 ENFYNRTQMDCVRNATQALIQSDRYGTSIGDSL 272
RT + L S G + D L
Sbjct: 145 RFLAKRTPSKVFADFLDRLAYSLDSGVELKDYL 177
>gi|26249922|ref|NP_755962.1| putative general secretion pathway protein F [Escherichia coli
CFT073]
gi|91212764|ref|YP_542750.1| putative general secretion pathway protein F [Escherichia coli
UTI89]
gi|110643566|ref|YP_671296.1| putative general secretion pathway protein F [Escherichia coli 536]
gi|117625605|ref|YP_858928.1| putative general secretion pathway protein F [Escherichia coli APEC
O1]
gi|191171599|ref|ZP_03033147.1| general secretion pathway protein F [Escherichia coli F11]
gi|218560388|ref|YP_002393301.1| general secretory pathway component, cryptic [Escherichia coli S88]
gi|218691612|ref|YP_002399824.1| general secretory pathway component, cryptic [Escherichia coli
ED1a]
gi|227883458|ref|ZP_04001263.1| general secretion pathway protein F [Escherichia coli 83972]
gi|237703057|ref|ZP_04533538.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
gi|300974006|ref|ZP_07172413.1| general secretion pathway protein F [Escherichia coli MS 200-1]
gi|300979898|ref|ZP_07174774.1| general secretion pathway protein F [Escherichia coli MS 45-1]
gi|301046098|ref|ZP_07193276.1| general secretion pathway protein F [Escherichia coli MS 185-1]
gi|306816330|ref|ZP_07450468.1| general secretory pathway component, cryptic [Escherichia coli
NC101]
gi|331659617|ref|ZP_08360555.1| general secretion pathway protein F [Escherichia coli TA206]
gi|26110350|gb|AAN82536.1|AE016767_296 Putative general secretion pathway protein F [Escherichia coli
CFT073]
gi|91074338|gb|ABE09219.1| putative general secretion pathway protein F [Escherichia coli
UTI89]
gi|110345158|gb|ABG71395.1| putative general secretion pathway protein F [Escherichia coli 536]
gi|115514729|gb|ABJ02804.1| putative general secretion pathway protein F [Escherichia coli APEC
O1]
gi|190908226|gb|EDV67817.1| general secretion pathway protein F [Escherichia coli F11]
gi|218367157|emb|CAR04931.1| general secretory pathway component, cryptic [Escherichia coli S88]
gi|218429176|emb|CAR10131.2| general secretory pathway component, cryptic [Escherichia coli
ED1a]
gi|226902321|gb|EEH88580.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
gi|227839602|gb|EEJ50068.1| general secretion pathway protein F [Escherichia coli 83972]
gi|294490049|gb|ADE88805.1| general secretion pathway protein F [Escherichia coli IHE3034]
gi|300301924|gb|EFJ58309.1| general secretion pathway protein F [Escherichia coli MS 185-1]
gi|300309016|gb|EFJ63536.1| general secretion pathway protein F [Escherichia coli MS 200-1]
gi|300409409|gb|EFJ92947.1| general secretion pathway protein F [Escherichia coli MS 45-1]
gi|305850726|gb|EFM51183.1| general secretory pathway component, cryptic [Escherichia coli
NC101]
gi|307555414|gb|ADN48189.1| general secretory pathway component [Escherichia coli ABU 83972]
gi|307628362|gb|ADN72666.1| general secretory pathway component, cryptic [Escherichia coli
UM146]
gi|315284598|gb|EFU44043.1| general secretion pathway protein F [Escherichia coli MS 110-3]
gi|315292356|gb|EFU51708.1| general secretion pathway protein F [Escherichia coli MS 153-1]
gi|315298625|gb|EFU57880.1| general secretion pathway protein F [Escherichia coli MS 16-3]
gi|323950241|gb|EGB46123.1| general secretion pathway protein F [Escherichia coli H252]
gi|323954550|gb|EGB50333.1| general secretion pathway protein F [Escherichia coli H263]
gi|324014943|gb|EGB84162.1| general secretion pathway protein F [Escherichia coli MS 60-1]
gi|331052832|gb|EGI24865.1| general secretion pathway protein F [Escherichia coli TA206]
Length = 398
Score = 38.7 bits (89), Expect = 1.1, Method: Composition-based stats.
Identities = 16/150 (10%), Positives = 55/150 (36%), Gaps = 13/150 (8%)
Query: 172 VQKRQSSIKR-AWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELS 230
V+ R+ I L + + ++++L + + + L++ + + +
Sbjct: 49 VKTRRPRISHSELTLFTRQLATLSAAALPLEESLAVIGQ--QSSNNRLADVLNQVRSAIL 106
Query: 231 FLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKK 290
A ++F + + L+++ + L L + + +
Sbjct: 107 EGHPLSDALQHFPTLFD-----SLYRTLVKAGEKSGLLAPVLEKLADYNENRQKIR---- 157
Query: 291 AASLGPKLTVPMIIFFLPVLILVIIGPAIL 320
+ L L P ++ + +++++I+ A++
Sbjct: 158 -SKLIQSLIYPCMLTTVAIVVVIILLTAVV 186
>gi|323702226|ref|ZP_08113892.1| hypothetical protein DesniDRAFT_1104 [Desulfotomaculum nigrificans
DSM 574]
gi|323532716|gb|EGB22589.1| hypothetical protein DesniDRAFT_1104 [Desulfotomaculum nigrificans
DSM 574]
Length = 269
Score = 38.7 bits (89), Expect = 1.2, Method: Composition-based stats.
Identities = 37/243 (15%), Positives = 81/243 (33%), Gaps = 20/243 (8%)
Query: 88 NLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQ 147
L+ EN K+ G +Y++ L + L ++ I + +I Y L+
Sbjct: 41 KLRDFYSTENEELKII--GKSPDYAIKASLFIGLAFGLLGWIATVHFIGPYSCLVAILLC 98
Query: 148 LRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRV 207
+ ++ + N +K QS + ++ + + G I A ++
Sbjct: 99 ILGLLLV----------KWVLGNEFKKWQSQLLIGVAQMVNFVPAFLSVGTIIPLAAFKL 148
Query: 208 AEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQS--DRYG 265
+ + P E+ + +S A + +R + V L S R+
Sbjct: 149 SLEF--IPEPFKGELSTALDRISRKAEVDEAMDRLIDRARHPLVDAICSRLKVSWDHRFE 206
Query: 266 TSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDT 325
+I D L + E + A+ A + +I + + PA +++
Sbjct: 207 PTIFDDLSDQIKEINE--MAAAKATVAKSATYAVLAIIGLI--GALFIYGFPAYKVLMEK 262
Query: 326 MKD 328
+
Sbjct: 263 VSG 265
>gi|182414900|ref|YP_001819966.1| type II secretion system protein [Opitutus terrae PB90-1]
gi|177842114|gb|ACB76366.1| type II secretion system protein [Opitutus terrae PB90-1]
Length = 439
Score = 38.7 bits (89), Expect = 1.2, Method: Composition-based stats.
Identities = 24/151 (15%), Positives = 47/151 (31%), Gaps = 16/151 (10%)
Query: 180 KRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAF 239
RA L V +G+ + + L +A G E + A + + A
Sbjct: 97 ARALALFTRQLATLVRAGMPLVRGLEVLARQESG--PRFREIVNDLAATIRAGESLSEAL 154
Query: 240 ENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLT 299
++ ++ G + L L + ++A AA +T
Sbjct: 155 AQHPRVFD-----RLYVSMARAGEAGGVLHVVLERLAAFLEKSARLKARIAAA-----MT 204
Query: 300 VPMIIFFL----PVLILVIIGPAILSIIDTM 326
P+I+ L ++V + P I +
Sbjct: 205 YPVIVLALAGGIVAALMVFVVPRFEQIFSGL 235
>gi|253574465|ref|ZP_04851806.1| type II secretion system protein [Paenibacillus sp. oral taxon 786
str. D14]
gi|251846170|gb|EES74177.1| type II secretion system protein [Paenibacillus sp. oral taxon 786
str. D14]
Length = 410
Score = 38.7 bits (89), Expect = 1.2, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 50/136 (36%), Gaps = 12/136 (8%)
Query: 180 KRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAF 239
+ +++GISI +A +AE +S PL + + AEL A
Sbjct: 70 NEQFVVFCRQFATMIKAGISIVEATAILAE--QSESKPLKKTLAEVTAELRKGNTLSGAV 127
Query: 240 ENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLT 299
+ + + G S+ ++L L + + K+A +T
Sbjct: 128 AAYPRIFPS----IFVHMVRAGEEAG-SMEETLERLAVYFEKAHVTREKVKSA-----MT 177
Query: 300 VPMIIFFLPVLILVII 315
P+I+ + V +++ +
Sbjct: 178 YPLIVSVMAVFVIIFL 193
>gi|309389115|gb|ADO76995.1| Type II secretion system F domain protein [Halanaerobium praevalens
DSM 2228]
Length = 414
Score = 38.7 bits (89), Expect = 1.2, Method: Composition-based stats.
Identities = 23/148 (15%), Positives = 54/148 (36%), Gaps = 8/148 (5%)
Query: 182 AWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFEN 241
+ L + + +GI + ++L + + E + +A++ A E
Sbjct: 77 ELANFAQRLSVLIAAGIPLVRSLTIIKNQSNIKHEK--EMLTQLLAKVEAGETLSSALEE 134
Query: 242 FYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVP 301
+ LI++ G + + L LV R+ + E K+A P +T+
Sbjct: 135 QPKYFP----KLFVH-LIRAGETGGVLDEVLAELVDYYRNRDKINKEVKSALYYP-ITIV 188
Query: 302 MIIFFLPVLILVIIGPAILSIIDTMKDH 329
++ +++ + P IL ++
Sbjct: 189 LVAIVAVFILMGFVLPNILDMLTGFGGQ 216
>gi|88856422|ref|ZP_01131080.1| putative integral membrane protein [marine actinobacterium
PHSC20C1]
gi|88814289|gb|EAR24153.1| putative integral membrane protein [marine actinobacterium
PHSC20C1]
Length = 305
Score = 38.7 bits (89), Expect = 1.2, Method: Composition-based stats.
Identities = 41/208 (19%), Positives = 74/208 (35%), Gaps = 34/208 (16%)
Query: 119 VRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSS 178
R+V+ + + L + G+D + +++G A W N R ++
Sbjct: 126 ARMVLALPAIGLVFGALLGFDTIGVLVSTPIGWGCLVVGGALIAAAVRW--NRRLVRSAT 183
Query: 179 IKRAWPDA-LDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQV 237
+A P +L+ I V G S+ A VA
Sbjct: 184 PTQAAPGLECELMAIAVSGGGSLVNARVVVAG---------------------------- 215
Query: 238 AFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPK 297
A E F D + L S G + LR E R +A AA+L +
Sbjct: 216 ALERFGLMGDGDHLEG---VLRLSHEAGVPAAELLRAEADELRLAADADARAGAAALSVR 272
Query: 298 LTVPMIIFFLPVLILVIIGPAILSIIDT 325
L +P+ + LP +++ + P ++++I +
Sbjct: 273 LMLPLGLCVLPAFMVLGVLPLMVAVISS 300
>gi|319639058|ref|ZP_07993815.1| PilG protein [Neisseria mucosa C102]
gi|317399636|gb|EFV80300.1| PilG protein [Neisseria mucosa C102]
Length = 413
Score = 38.7 bits (89), Expect = 1.2, Method: Composition-based stats.
Identities = 26/166 (15%), Positives = 56/166 (33%), Gaps = 15/166 (9%)
Query: 168 ISNLVQKRQSSIKRA-WPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTI 226
IS + R+ I + L +++G+ + QA VA G + ++E ++
Sbjct: 59 ISKVKTARKRRITQEDITVFTRQLATMMKAGLPLMQAFEIVAR--GHSNPSMTEMLMQVR 116
Query: 227 AELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLME 286
+++ +F + L+ + G + L L E+
Sbjct: 117 SDVEQGSALGKSFSKYPKYFD-----RFYCNLVSAGESGGVLESLLDKLA--VYKEKTQA 169
Query: 287 AEKKAASL---GPKLTVPMIIFFLPVLILVIIGPAILSIIDTMKDH 329
+KK + + V I +++ V+ PA + M
Sbjct: 170 IKKKVKTALTYPIAIIVVAIALIFIMMMFVL--PAFKEVYANMGAE 213
>gi|332158825|ref|YP_004424104.1| flagellar assembly protein J [Pyrococcus sp. NA2]
gi|331034288|gb|AEC52100.1| flagellar assembly protein J [Pyrococcus sp. NA2]
Length = 571
Score = 38.7 bits (89), Expect = 1.2, Method: Composition-based stats.
Identities = 27/153 (17%), Positives = 50/153 (32%), Gaps = 4/153 (2%)
Query: 121 LVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIK 180
L+ II + I I + +L++ P L ++ + + + ++ SI
Sbjct: 24 LLPGIIGSGVLFIAIGLFTRLIQLPRGLVFFMYLIPVIIAIYV-AAYPYLSADSKRLSIN 82
Query: 181 RAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFL-PNRQVAF 239
P + + S I L+ +A D ++ EM + L + A
Sbjct: 83 SKLPYFITYFAVLSTSEIGRTDILKVLASDPK--LGAIASEMKKVYIIVDKLHRSLPEAL 140
Query: 240 ENFYNRTQMDCVRNATQALIQSDRYGTSIGDSL 272
RT + L S G + D L
Sbjct: 141 RFLARRTPSKVFADFLDRLAYSLDSGVELKDYL 173
>gi|206972822|ref|ZP_03233744.1| membrane protein, putative [Bacillus cereus AH1134]
gi|206731706|gb|EDZ48906.1| membrane protein, putative [Bacillus cereus AH1134]
Length = 310
Score = 38.7 bits (89), Expect = 1.3, Method: Composition-based stats.
Identities = 22/194 (11%), Positives = 64/194 (32%), Gaps = 16/194 (8%)
Query: 125 IIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWP 184
+ + + +++ F + + ++ GF P + ++ +
Sbjct: 84 LSGMSIAVVFYFSFGRDP---------FTLITVLSGFLVPRFLLYRRKKRYYLVVIDRLS 134
Query: 185 DALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYN 244
+ + ++ + A R + + + EE+ L AF F
Sbjct: 135 IYMKAVANALQIS---NNAKRVLVQVKPMMHESIQEEIEKVSLLLEGGTTMHRAFREFNE 191
Query: 245 RTQMDCVRNATQALIQ-SDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVP-- 301
+ + L S GT+ L + + ++L A +++ +
Sbjct: 192 TFNFRELVFFHEMLEVCSREGGTNSVQVLLDIAEDFEKQKLYLARLRSSLSQAQRAFVQN 251
Query: 302 -MIIFFLPVLILVI 314
+I+ +P++I+++
Sbjct: 252 CLIVIAMPIVIMLM 265
>gi|304313087|ref|YP_003812685.1| General secretion pathway protein F [gamma proteobacterium HdN1]
gi|301798820|emb|CBL47053.1| General secretion pathway protein F [gamma proteobacterium HdN1]
Length = 404
Score = 38.7 bits (89), Expect = 1.3, Method: Composition-based stats.
Identities = 29/160 (18%), Positives = 59/160 (36%), Gaps = 16/160 (10%)
Query: 174 KRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLP 233
+R S L V +GI I+ ALR V++ + ++ ML + +
Sbjct: 58 RRGSMGSADLALVTRQLATLVRAGIPIEGALRAVSK--QSEKPKVASIMLAVRSRVVEGH 115
Query: 234 NRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAAS 293
+ + A F + +A I + + + L L T S + + A
Sbjct: 116 SLESALAEFPQAFP-----DLYRATIGAGEHSGHLDLVLEQLSDYTESRHRTQRTIQGA- 169
Query: 294 LGPKLTVPMIIFFLPVLILV----IIGPAILSIIDTMKDH 329
+ P+++ VLI+V + P I+++ ++
Sbjct: 170 ----MIYPIVLTAFAVLIVVGMLMFVVPKIVTVFESSGQQ 205
>gi|209525547|ref|ZP_03274086.1| type II secretion system protein [Arthrospira maxima CS-328]
gi|209494046|gb|EDZ94362.1| type II secretion system protein [Arthrospira maxima CS-328]
Length = 377
Score = 38.7 bits (89), Expect = 1.3, Method: Composition-based stats.
Identities = 17/136 (12%), Positives = 42/136 (30%), Gaps = 11/136 (8%)
Query: 180 KRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAF 239
+ +GIS+ + L + E + L + A++ +
Sbjct: 34 VKDLAIFARQFAAMFNAGISMARCLSVLGEQCE--NAKLKRAINTLRADVEEGEELSSSM 91
Query: 240 ENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLT 299
F + + + + G + ++L L ++E K+A+ PK
Sbjct: 92 RKFPDVFD----QLFVSMVS-AGETGGVLDETLERLAVMMEKNHKTQSEIKSATSYPK-- 144
Query: 300 VPMIIFFLPVLILVII 315
++F + +
Sbjct: 145 --TVLFIAIAVFFGMA 158
>gi|256832577|ref|YP_003161304.1| type II secretion system protein [Jonesia denitrificans DSM 20603]
gi|256686108|gb|ACV09001.1| type II secretion system protein [Jonesia denitrificans DSM 20603]
Length = 410
Score = 38.7 bits (89), Expect = 1.3, Method: Composition-based stats.
Identities = 20/154 (12%), Positives = 55/154 (35%), Gaps = 16/154 (10%)
Query: 180 KRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAF 239
+ L + +G+S+ +AL + E ++ L + +++ + A
Sbjct: 70 LKEIAIMSRQLATMINAGLSLLRALTILTE--QTENKVLQGILGTVRSDVETGGSLSSAL 127
Query: 240 ENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLT 299
++++ G + +L + E ++ + K+A +T
Sbjct: 128 AKHPKVFP-----PLMINMVRAGETGGFLDKTLLSIAKNFEDEVKLKGKIKSA-----MT 177
Query: 300 VPMIIFFLPVL----ILVIIGPAILSIIDTMKDH 329
P+++ + +L +L+ I P + T+
Sbjct: 178 YPVVVLVIAILASAGMLIFIVPVFAGMFATLGGE 211
>gi|77454609|ref|YP_345477.1| hypothetical protein pREL1_0042 [Rhodococcus erythropolis PR4]
gi|77019609|dbj|BAE45985.1| conserved hypothetical membrane protein [Rhodococcus erythropolis
PR4]
Length = 292
Score = 38.7 bits (89), Expect = 1.3, Method: Composition-based stats.
Identities = 34/195 (17%), Positives = 62/195 (31%), Gaps = 18/195 (9%)
Query: 126 IFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPD 185
+ L +GI+ L + F L + +L+G P +S + Q A +
Sbjct: 52 MLLAVGIVAGASVYYLSGWLFTLFLVPALLVG-----LP-YLLSRPEAEHQIRRLAAMDE 105
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVP-LSEEMLLTIAELSFLPNRQVAFENFYN 244
L + +G I+ + I L +E+ I L A F +
Sbjct: 106 WTRNLSSSMRAGSGIEHTI------ISTPIPETLKDEITAFINRLRNNVPPAEAVTRFAS 159
Query: 245 RTQMDCVRNATQALIQSDRY-GTSIGDSLRVLVSE----TRSERLMEAEKKAASLGPKLT 299
AL+ + + G + + L L + R +EA++K+ K
Sbjct: 160 DLNDSVGDKICGALLLAMQLRGVGLANVLEGLAEDVGDTVARRRRIEADRKSTRTQAKWV 219
Query: 300 VPMIIFFLPVLILVI 314
+ I L
Sbjct: 220 TIITIAVLAAAFAFT 234
>gi|325288257|ref|YP_004264438.1| hypothetical protein Sgly_0063 [Syntrophobotulus glycolicus DSM
8271]
gi|324963658|gb|ADY54437.1| hypothetical protein Sgly_0063 [Syntrophobotulus glycolicus DSM
8271]
Length = 309
Score = 38.7 bits (89), Expect = 1.4, Method: Composition-based stats.
Identities = 29/177 (16%), Positives = 60/177 (33%), Gaps = 19/177 (10%)
Query: 115 ILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQK 174
++ + + F + I I + L V ++ P W+
Sbjct: 77 RFPMLCALSLLCFAVGASIAIMLSNFFL----------VPVMAVGCMFLPFWWVKLTASH 126
Query: 175 RQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFL-P 233
+ I AL ++ + + L V E++ + P+ ++ + + P
Sbjct: 127 FKRDIAAELETALSIITTAY---LRNEDILTAVDENLPYLNPPVLSVFKGFVSRVRLVDP 183
Query: 234 NRQVAFENFYNRTQMDCVRNATQALI--QSDRYGTSIGDSLRVLVSETRSERLMEAE 288
+ A + +R ALI Q DR S+ +L +VS+ R++ E
Sbjct: 184 DVTAALHDLKDRIDNAVYVEWCDALIACQHDR---SLKTTLTPIVSKLSDMRVVNGE 237
>gi|237729402|ref|ZP_04559883.1| type IV pilin biogenesis protein [Citrobacter sp. 30_2]
gi|226909131|gb|EEH95049.1| type IV pilin biogenesis protein [Citrobacter sp. 30_2]
Length = 400
Score = 38.7 bits (89), Expect = 1.4, Method: Composition-based stats.
Identities = 29/140 (20%), Positives = 52/140 (37%), Gaps = 10/140 (7%)
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
+L + +GI Q L V E + + S+ + L ++S +A +N
Sbjct: 269 VLALTQNAGIPFLQGLESVTETLA--NPFWSQRLALVQQDISSGKPIWLALKN------S 320
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP 308
L+++ S+ LR L + L +A+ AA L P L V +
Sbjct: 321 CEFSPLCIQLVRTGEASGSLDAMLRNLAHHHGEKTLAQAKNLAALLEPALLVITGLII-- 378
Query: 309 VLILVIIGPAILSIIDTMKD 328
++V + I + D M
Sbjct: 379 GTLVVAMYLPIFHLGDAMSG 398
>gi|157502154|ref|YP_001485253.1| hypothetical protein pBMB67_067 [Bacillus thuringiensis]
gi|87133459|gb|ABD24369.1| hypothetical membrane protein [Bacillus thuringiensis]
Length = 277
Score = 38.7 bits (89), Expect = 1.4, Method: Composition-based stats.
Identities = 44/235 (18%), Positives = 97/235 (41%), Gaps = 10/235 (4%)
Query: 94 VDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAV 153
++E + KL A + + L+ +LV+ I + +I+ + + + + +
Sbjct: 51 MEEELNIKLDKANL--KITPIEFLLKKLVISIFVFLFALIYAWIFPQYK----LIILTVG 104
Query: 154 ILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGG 213
++I + F +V ++++++ R+ ++ P+ + L + S S +A +R E
Sbjct: 105 LIISALVFFYENVRLNSIIKSRELRLELELPELMIPLGFML-SKFSAFEATKRSIEYASD 163
Query: 214 QSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLR 273
P +EE+ +A+L P + F + AL QS + +
Sbjct: 164 SIKPYAEEL---VAKLELEPGSHEPYIEFAKALNIPSAYQFMVALEQSMKMDEEKSKEII 220
Query: 274 VLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMKD 328
E + E+ K + P L IIF ++++I+G + +SI D +
Sbjct: 221 NAQIEVMQKLQSESHDKLVKMRPGLVSKYIIFAYLGMVILIMGISFVSIFDKFVN 275
>gi|328883371|emb|CCA56610.1| hypothetical protein SVEN_3324 [Streptomyces venezuelae ATCC 10712]
Length = 260
Score = 38.7 bits (89), Expect = 1.4, Method: Composition-based stats.
Identities = 25/130 (19%), Positives = 49/130 (37%), Gaps = 6/130 (4%)
Query: 197 GISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQ 256
G +A V +GG PL E + T AEL + F + +
Sbjct: 134 GAGPGEAAEAVGRSLGG---PLGERLTRTAAELRLGGEPGEVWRRFGA---IPGAEGLAR 187
Query: 257 ALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIG 316
+ ++ G +++ + RS R A +A ++ P+ + FLP + V +
Sbjct: 188 CMERAGSSGAPAAEAVARHAAALRSARARAAAARARRAQVLISAPVGLCFLPAFLAVGVA 247
Query: 317 PAILSIIDTM 326
P ++ + +
Sbjct: 248 PVVIGLATGL 257
>gi|83589194|ref|YP_429203.1| hypothetical protein Moth_0326 [Moorella thermoacetica ATCC 39073]
gi|83572108|gb|ABC18660.1| hypothetical protein Moth_0326 [Moorella thermoacetica ATCC 39073]
Length = 256
Score = 38.7 bits (89), Expect = 1.4, Method: Composition-based stats.
Identities = 40/232 (17%), Positives = 80/232 (34%), Gaps = 13/232 (5%)
Query: 84 VKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLE 143
V + + I +L + G R + + VV + + + G
Sbjct: 13 VSPAEIATGSIRRKIREQLTS-GRRGQMLEAVGRAAGDVVKAGIMSGAGLGVLGLLLCYG 71
Query: 144 YPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVES-GISIDQ 202
+ + +++ VG + N +K Q + P L+ + E G++ +
Sbjct: 72 FMGVWAILPALVLFAVGVFLTGFLVENEFKKWQGKVLEGIPSLLNFIPAFREVEGVTPRE 131
Query: 203 ALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSD 262
AL A + PL +E+ + +++ + AF+ + + V L S
Sbjct: 132 AL---ALSLPFIPRPLRDELKRALDKIARTGDVVGAFDELAGKVKHPLVDAVCFRLATSW 188
Query: 263 RYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVI 314
T+ GD L + + E+ AA T IF L ++ +I
Sbjct: 189 TT-TAGGDIFADLSDQMAGLK----EEMAARAT---TGKTAIFALVCVLGLI 232
>gi|331701309|ref|YP_004398268.1| type II secretion system F domain-containing protein [Lactobacillus
buchneri NRRL B-30929]
gi|329128652|gb|AEB73205.1| Type II secretion system F domain protein [Lactobacillus buchneri
NRRL B-30929]
Length = 353
Score = 38.7 bits (89), Expect = 1.4, Method: Composition-based stats.
Identities = 25/131 (19%), Positives = 50/131 (38%), Gaps = 17/131 (12%)
Query: 185 DALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYN 244
+ D L + G S+ QAL+ +A+ LS + + I L +
Sbjct: 33 NFFDSLANLLSIGFSLTQALKFIAD----TDKQLSRGVNVVIGSLKSGREFSESVR---- 84
Query: 245 RTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMII 304
+ + Q LI ++++G + D L L + R + KA L P+ +
Sbjct: 85 --PLIETQAYHQLLI-AEKHG-QLSDILNELANFDRLRLKQLKKIKAM-----LVYPLFL 135
Query: 305 FFLPVLILVII 315
+ ++++I
Sbjct: 136 CLILGTLILMI 146
>gi|302342771|ref|YP_003807300.1| Type II secretion system F domain protein [Desulfarculus baarsii
DSM 2075]
gi|301639384|gb|ADK84706.1| Type II secretion system F domain protein [Desulfarculus baarsii
DSM 2075]
Length = 359
Score = 38.7 bits (89), Expect = 1.4, Method: Composition-based stats.
Identities = 27/162 (16%), Positives = 56/162 (34%), Gaps = 18/162 (11%)
Query: 171 LVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVA-EDIGGQSVPLSEEMLLTIAEL 229
++ + + + L + V +G+ +D L V+ G+ L+ EMLL +
Sbjct: 10 RGRRAKPLRAEELCNFTEGLAVLVGAGLPLDHVLETVSFMHDSGRVRALTAEMLLA---V 66
Query: 230 SFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEK 289
+ A + + L+Q+ ++ L L R E
Sbjct: 67 RGGASLTRA---MAEQNGVFSPAYL--GLVQAGELSGALAKVLDELAKGLRR----NLEI 117
Query: 290 KAASLGPKLTVPMII----FFLPVLILVIIGPAILSIIDTMK 327
K L L P ++ F + I++ + P + + + M
Sbjct: 118 KRHLLTV-LLYPAVLLAVSFLAILFIMIYVLPTFVGVFNDMS 158
>gi|283778327|ref|YP_003369082.1| type II secretion system protein [Pirellula staleyi DSM 6068]
gi|283436780|gb|ADB15222.1| type II secretion system protein [Pirellula staleyi DSM 6068]
Length = 474
Score = 38.3 bits (88), Expect = 1.4, Method: Composition-based stats.
Identities = 24/148 (16%), Positives = 55/148 (37%), Gaps = 15/148 (10%)
Query: 180 KRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAF 239
+ L I ++G+ I ++LR + ++ + L ++ E+ A
Sbjct: 73 SKQLSLFTKQLSILQDAGLPILRSLRIL--ELQSKPGALKNALMDVGDEIESGSTLSEA- 129
Query: 240 ENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLT 299
++ +I++ G ++ LR L ++ + K A +
Sbjct: 130 --MAKSPKV--FSRLYINMIKAGEAGGALEVILRRLSEFLERSESLKRKVKGA-----MI 180
Query: 300 VPMIIFFLPVLILVIIGPAILSIIDTMK 327
P+++ + + ILV I +L I+ K
Sbjct: 181 YPVVVVLVAISILVFI---MLKIVPVFK 205
>gi|225351468|ref|ZP_03742491.1| hypothetical protein BIFPSEUDO_03063 [Bifidobacterium
pseudocatenulatum DSM 20438]
gi|225157812|gb|EEG71095.1| hypothetical protein BIFPSEUDO_03063 [Bifidobacterium
pseudocatenulatum DSM 20438]
Length = 424
Score = 38.3 bits (88), Expect = 1.4, Method: Composition-based stats.
Identities = 27/146 (18%), Positives = 62/146 (42%), Gaps = 11/146 (7%)
Query: 181 RAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFE 240
+ + L V +G+S+ +AL V E IG +V L + + ++ + A +
Sbjct: 81 KDFAVMSRQLATMVAAGVSLIRALNIVTEQIG--NVKLRNAVRDCMQQVEAGSSFSEAMD 138
Query: 241 NFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV 300
N + + N + + G + SL + ++ ++ + K A L
Sbjct: 139 NNPDHLFPPIMINMVR----AGETGGFLDKSLITVADSFEADVRLQGQIKGA-----LAY 189
Query: 301 PMIIFFLPVLILVIIGPAILSIIDTM 326
P+++ + VL++ ++ I+ + D+M
Sbjct: 190 PVVVLGIAVLLVGVMLLTIVPMFDSM 215
>gi|145294433|ref|YP_001137254.1| hypothetical protein cgR_0388 [Corynebacterium glutamicum R]
gi|140844353|dbj|BAF53352.1| hypothetical protein [Corynebacterium glutamicum R]
Length = 258
Score = 38.3 bits (88), Expect = 1.4, Method: Composition-based stats.
Identities = 24/185 (12%), Positives = 59/185 (31%), Gaps = 10/185 (5%)
Query: 124 PIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAW 183
+ L ++ + + +I+ + + ++ +R
Sbjct: 32 GVHLFALIALFCLATVLFIVVDAYTMIAGIIIATTLFWYLRQ---THAAAQRTKQ-SLQL 87
Query: 184 PDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFY 243
L L + +G+++ A+ A D LS + + + +
Sbjct: 88 ASFLSLCAGNLRAGVTMVDAMDY-ALDNTTPDKFLSPTLQTAARQARSGGSGPRVLIDAS 146
Query: 244 NRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMI 303
+ ++ S+R+G + + + S S++ +AA GP+ T I
Sbjct: 147 ----LPDLQRLGHLWETSERHGIPLVALIDQMRSRISSKQRHGESTRAALQGPQATAV-I 201
Query: 304 IFFLP 308
+ LP
Sbjct: 202 LTVLP 206
>gi|119512357|ref|ZP_01631442.1| pilin biogenesis protein [Nodularia spumigena CCY9414]
gi|119463008|gb|EAW43960.1| pilin biogenesis protein [Nodularia spumigena CCY9414]
Length = 405
Score = 38.3 bits (88), Expect = 1.5, Method: Composition-based stats.
Identities = 21/141 (14%), Positives = 54/141 (38%), Gaps = 12/141 (8%)
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
+ + +G++I ++L + E + L + +L ++ N + +
Sbjct: 70 FSRQFAVLMNAGVAIVRSLGVLGEQC--SNPRLKQALLEISNDVQTGMNLSESMQKHP-- 125
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
+C +++Q+ G + D L L ++ + K+A L+ P+++
Sbjct: 126 ---ECFDGLYVSMVQAGEIGGVLDDVLNRLAKLLEDVARLQNQIKSA-----LSYPVVVG 177
Query: 306 FLPVLILVIIGPAILSIIDTM 326
L I V + ++ I +
Sbjct: 178 ILATTIFVAMTVFLIPIFANI 198
>gi|89892803|ref|YP_516290.1| hypothetical protein DSY0057 [Desulfitobacterium hafniense Y51]
gi|89332251|dbj|BAE81846.1| hypothetical protein [Desulfitobacterium hafniense Y51]
Length = 309
Score = 38.3 bits (88), Expect = 1.5, Method: Composition-based stats.
Identities = 30/193 (15%), Positives = 67/193 (34%), Gaps = 13/193 (6%)
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
++ + +F V ++ P W+ + I AL
Sbjct: 80 MLCALSLLFFAVGASIAVMLSNFFLVPVMAMGCMLLPFWWVKLTASHFKKDIAAELETAL 139
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFL-PNRQVAFENFYNRT 246
++ + + L V E++ + P+ ++ + + PN A + R
Sbjct: 140 SIITTAY---LRNEDILTAVEENLPYLNPPVLSVFKGFVSRVRLVDPNVTAALHDVKMRI 196
Query: 247 QMDCVRNATQALI--QSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPK----LTV 300
ALI Q DR S+ +L +VS+ R++ E + P+ + V
Sbjct: 197 DNAVFHEWCDALISCQHDR---SLKTTLTPIVSKLSDMRVVNGELENMVFEPRKEFIIMV 253
Query: 301 PMIIFFLPVLILV 313
+++ +P++ +
Sbjct: 254 VLVVGNIPLMYFL 266
>gi|253995967|ref|YP_003048031.1| type II secretion system protein [Methylotenera mobilis JLW8]
gi|253982646|gb|ACT47504.1| type II secretion system protein [Methylotenera mobilis JLW8]
Length = 407
Score = 38.3 bits (88), Expect = 1.5, Method: Composition-based stats.
Identities = 20/155 (12%), Positives = 58/155 (37%), Gaps = 24/155 (15%)
Query: 181 RAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFE 240
+ L ++SG+ + Q+ V + G + +++ + +++ + AF
Sbjct: 66 KDITLFTRQLATMMKSGVPLLQSFDIVGK--GHSNPAVAKLLGDIKSDVETGSSLSAAFR 123
Query: 241 NFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKL-- 298
+ + ++ G I D+L +RL ++K ++ K+
Sbjct: 124 KYPLYFD----ALFCNLISAGEQAG--ILDTL--------LDRLATYKEKIQAIKSKIKS 169
Query: 299 ------TVPMIIFFLPVLILVIIGPAILSIIDTMK 327
++ ++ F + +I++ + PA + +
Sbjct: 170 ALFYPVSIIVVAFIITAVIMIFVVPAFKELFSSFG 204
>gi|312194222|ref|YP_004014283.1| type II secretion system F [Frankia sp. EuI1c]
gi|311225558|gb|ADP78413.1| Type II secretion system F domain protein [Frankia sp. EuI1c]
Length = 501
Score = 38.3 bits (88), Expect = 1.6, Method: Composition-based stats.
Identities = 45/222 (20%), Positives = 77/222 (34%), Gaps = 24/222 (10%)
Query: 126 IFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPD 185
I L++ + L Q G ++ G V + ++ + R+ + P
Sbjct: 279 IALVIAAGGLCAGAAALVSHGQRGFGVLLATGAVAALVGAGMRTDPDRARRERLLADLPL 338
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
ALDL+ C+ +G ++ AL + G PL E+ T L
Sbjct: 339 ALDLVAACLVAGATVPAALEATGD---GVGGPLGAELRATARGLRLGAPAGHTTTRLIAA 395
Query: 246 TQM---------------------DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERL 284
Q + A QAL + + G + D+L + S R++
Sbjct: 396 GQGPPGPFPGPLRRVTGHRGTGRGQPLAAAAQALGRVESSGARLADALTSIASRARAQSH 455
Query: 285 MEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
EA A G P+ + FLP +L+ + P IL +
Sbjct: 456 DEAIGAARRAGVAAVAPLGLCFLPAFLLLGVVPTILGSFHGL 497
>gi|218246449|ref|YP_002371820.1| type II secretion system protein [Cyanothece sp. PCC 8801]
gi|257059491|ref|YP_003137379.1| type II secretion system protein [Cyanothece sp. PCC 8802]
gi|218166927|gb|ACK65664.1| type II secretion system protein [Cyanothece sp. PCC 8801]
gi|256589657|gb|ACV00544.1| type II secretion system protein [Cyanothece sp. PCC 8802]
Length = 404
Score = 38.3 bits (88), Expect = 1.6, Method: Composition-based stats.
Identities = 18/144 (12%), Positives = 50/144 (34%), Gaps = 8/144 (5%)
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
+ + +G++I + L ++E + L + + AE+ + A
Sbjct: 69 FSRQFSVMINAGVAIVRCLGILSE--QASNPKLKKALGAISAEVQQGVSLSEAMGKHP-- 124
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
+C +++++ G + + L L ++ + K+A P + +
Sbjct: 125 ---ECFDELYVSMVEAGEMGGVLDEVLNRLSKLLEDMARLQNQIKSAMAYPVTVGVLAVL 181
Query: 306 FLPVLILVIIGPAILSIIDTMKDH 329
+ + +I P I + +
Sbjct: 182 VFFGMTIFLI-PVFAKIFEDLGAE 204
>gi|297520181|ref|ZP_06938567.1| general secretory pathway component, cryptic [Escherichia coli
OP50]
Length = 202
Score = 38.3 bits (88), Expect = 1.6, Method: Composition-based stats.
Identities = 16/157 (10%), Positives = 52/157 (33%), Gaps = 14/157 (8%)
Query: 172 VQKRQSSIKR-AWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELS 230
V+ R+ I L + + ++++L + + + L + + + +
Sbjct: 49 VKTRRPRISHSELTLFTRQLATLSAAALPLEESLAVIGQ--QSSNKRLGDVLNQVRSAIL 106
Query: 231 FLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKK 290
A ++F + + L+++ + L L + + +
Sbjct: 107 EGHPLSDALQHFPTLFD-----SLYRTLVKAGEKSGLLAPVLEKLADYNENRQKIR---- 157
Query: 291 AASLGPKLTVP-MIIFFLPVLILVIIGPAILSIIDTM 326
+ L L P M+ ++++++ + I +
Sbjct: 158 -SKLIQSLIYPCMLTTVAIGVVIILLTAVVPKITEQF 193
>gi|256393177|ref|YP_003114741.1| type II secretion system protein [Catenulispora acidiphila DSM
44928]
gi|256359403|gb|ACU72900.1| type II secretion system protein [Catenulispora acidiphila DSM
44928]
Length = 296
Score = 38.3 bits (88), Expect = 1.6, Method: Composition-based stats.
Identities = 23/155 (14%), Positives = 51/155 (32%), Gaps = 4/155 (2%)
Query: 163 APSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEM 222
P ++ + + + A + L + + ++Q++ P+ E+
Sbjct: 86 LPGMFGKDGAAADEQARIEAIATFTEALRDTLGAAAGLEQSILAA---AANAPAPIRAEV 142
Query: 223 LLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGT-SIGDSLRVLVSETRS 281
A L A F AL+ + R ++G+ L L R
Sbjct: 143 AELAANLKAGTRLDEALRTFAADLGDATGDLVVAALVLASRQQARNLGEVLGELARYARE 202
Query: 282 ERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIG 316
+ A + +V +I+ F+ + V++G
Sbjct: 203 QAAQSMRITADRARTRSSVRIIVAFVFAVAGVLVG 237
>gi|225158976|ref|ZP_03725287.1| type II secretion system protein [Opitutaceae bacterium TAV2]
gi|224802417|gb|EEG20678.1| type II secretion system protein [Opitutaceae bacterium TAV2]
Length = 440
Score = 38.3 bits (88), Expect = 1.6, Method: Composition-based stats.
Identities = 23/151 (15%), Positives = 51/151 (33%), Gaps = 16/151 (10%)
Query: 180 KRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAF 239
++ L + +G+ I ++L +A +++P + +
Sbjct: 98 QKGLTLFTRQLATLINAGMPILRSLETLAR--QEKNIPFKNVVEDVAETIRSGGTFSDGL 155
Query: 240 ENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLT 299
++++ G +G L L + + +A K + +T
Sbjct: 156 LQNPKVFD-----RLYVNMVKAGEAGGVLGTVLDRLA-----KFMEKAMKIKGKVKSAMT 205
Query: 300 VPMIIFFLPVLIL----VIIGPAILSIIDTM 326
P+II F+ V I+ V + P I D +
Sbjct: 206 YPIIILFVAVAIVSALMVFVIPKFQEIFDGL 236
>gi|11498653|ref|NP_069881.1| flagellar assembly protein J [Archaeoglobus fulgidus DSM 4304]
gi|2649538|gb|AAB90189.1| conserved hypothetical protein [Archaeoglobus fulgidus DSM 4304]
Length = 541
Score = 38.3 bits (88), Expect = 1.6, Method: Composition-based stats.
Identities = 25/153 (16%), Positives = 59/153 (38%), Gaps = 5/153 (3%)
Query: 115 ILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQK 174
+L+ + + +L + F L P G L+ + P +++ + +
Sbjct: 231 MLIPIAFFAVLFLTVLPTLLNFTGGGLGILPKADYRGVGFLLAGL-VLLPVGYLARIDDQ 289
Query: 175 RQSSIKRAWPDALDLL-LICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLP 233
+ S A+ + L I +G+S+ +AL R+ + G+ L ++ LS
Sbjct: 290 KISKRDEAFTAFIRSLGAIKSGAGVSVAEALSRIDQKNLGELRELVMQLYR---RLSMGL 346
Query: 234 NRQVAFENFYNRTQMDCVRNATQALIQSDRYGT 266
+ ++++E F + + T + + G
Sbjct: 347 DAKLSWERFVGESGSYLISKLTAIFVDATDLGG 379
>gi|260892669|ref|YP_003238766.1| Flp pilus assembly protein TadB-like protein [Ammonifex degensii
KC4]
gi|260864810|gb|ACX51916.1| Flp pilus assembly protein TadB-like protein [Ammonifex degensii
KC4]
Length = 285
Score = 38.3 bits (88), Expect = 1.7, Method: Composition-based stats.
Identities = 33/191 (17%), Positives = 66/191 (34%), Gaps = 7/191 (3%)
Query: 127 FLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDA 186
FL+L ++ G L Y +V +L GF A + + R + ++ +P A
Sbjct: 52 FLVLTLVSAAGV-ALAAYGVTGQVHLALLSAPGGFFAATALVRRRAAARLALLRHQYPMA 110
Query: 187 LDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPN---RQVAFENFY 243
L L ++ G S QAL +V + P+ + + + + + A
Sbjct: 111 LAALASAMQGGCSFYQALEQVTPTLR---PPMRDVFADVLRRVRTSTSPRAYEEAVLEVA 167
Query: 244 NRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMI 303
+ + ++ R G ++ + L LV A + ++T +
Sbjct: 168 KAAGFPDLNSLAMSVGLYQRTGGNLVEVLDHLVKCLYERESDRRYVAAVTAEARVTAAFL 227
Query: 304 IFFLPVLILVI 314
L+ V
Sbjct: 228 SALPFALMGVF 238
>gi|315230974|ref|YP_004071410.1| flagella protein FlaJ-like protein [Thermococcus barophilus MP]
gi|315184002|gb|ADT84187.1| flagella protein FlaJ-like protein [Thermococcus barophilus MP]
Length = 569
Score = 38.3 bits (88), Expect = 1.7, Method: Composition-based stats.
Identities = 30/181 (16%), Positives = 56/181 (30%), Gaps = 22/181 (12%)
Query: 103 RAAGFRSEYSLNILLVVRLVVP--IIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVG 160
+ AG ++ L I ++ V+ I ++ I I + + P + + A+ I +
Sbjct: 4 KKAGIFTQSDLTIRSYLKAVLGPSIAISVVLFIIISIAPRFVGIPHMVSI-ALYAIPLLP 62
Query: 161 FCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVES---------GISIDQALRRVAEDI 211
+ ++ I P + S +S +Q L +A D+
Sbjct: 63 LIYAVSYPYAKASSKKVKINSKIPYFATYFAVLSTSDVSRSDLIWNLSTEQILEPIATDM 122
Query: 212 GGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDS 271
IA+L A RT + + L S G + D
Sbjct: 123 KKVY--------YLIAKLHRGMP--EALRFLAKRTPSKVFSDFLERLAYSLDSGVELKDY 172
Query: 272 L 272
L
Sbjct: 173 L 173
>gi|302205374|gb|ADL09716.1| Putative membrane protein [Corynebacterium pseudotuberculosis C231]
Length = 72
Score = 38.3 bits (88), Expect = 1.7, Method: Composition-based stats.
Identities = 14/62 (22%), Positives = 32/62 (51%)
Query: 261 SDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAIL 320
S+R G ++ ++ L + R+ + +A G + +P+ + FLP L+ + P ++
Sbjct: 5 SERSGATLAEACERLARQLRARASDLSLARAERAGVLIALPLTVCFLPAFFLLGLAPVVI 64
Query: 321 SI 322
S+
Sbjct: 65 SL 66
>gi|269955832|ref|YP_003325621.1| type II secretion system protein [Xylanimonas cellulosilytica DSM
15894]
gi|269304513|gb|ACZ30063.1| type II secretion system protein [Xylanimonas cellulosilytica DSM
15894]
Length = 285
Score = 38.3 bits (88), Expect = 1.7, Method: Composition-based stats.
Identities = 34/195 (17%), Positives = 65/195 (33%), Gaps = 17/195 (8%)
Query: 98 IVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIG 157
+ L AG + ++ + +L +G
Sbjct: 37 TQDLLVQAG-----------AASVTPGALYGASAALAAVVLLMVLATTRSPAIGLCFAAI 85
Query: 158 YVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVP 217
+ V + +KR+ S++ WP+ +D L V +G+S+ +A+ ++ E V
Sbjct: 86 AAAAPSALV--AARARKRRRSLREVWPEVVDHLASGVRAGLSLPEAVGQLGER---GPVE 140
Query: 218 LSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTS-IGDSLRVLV 276
L E A+ + + R +AL + G S +G LR L
Sbjct: 141 LREPFARFAADYRATGRFTESLDLLKARLADPVADRIIEALRLTREVGGSDLGRLLRTLS 200
Query: 277 SETRSERLMEAEKKA 291
+ R + E +A
Sbjct: 201 TFLREDARTRGELEA 215
>gi|34556964|ref|NP_906779.1| MSHA biogenesis protein MshG [Wolinella succinogenes DSM 1740]
gi|34482679|emb|CAE09679.1| MSHA BIOGENESIS PROTEIN MSHG [Wolinella succinogenes]
Length = 415
Score = 38.3 bits (88), Expect = 1.7, Method: Composition-based stats.
Identities = 25/165 (15%), Positives = 61/165 (36%), Gaps = 10/165 (6%)
Query: 166 VWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLT 225
++ + ++ + A + + + +GISI + + + + L
Sbjct: 58 LYFWDSIRGKNRVKLEDMIPAFRQMSLMLNAGISIHATIEDLI--VFSANERLKLIFRDV 115
Query: 226 IAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLM 285
++ ++ + AF + + + + + +LI S+ +L +L R
Sbjct: 116 LSGINSGKSLSEAFGAY-----QEDLGSLSLSLISLGEQTGSLSHALAMLAETLEEIRSN 170
Query: 286 EAE-KKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMKDH 329
A+ KKA + M VL++V++ P +I D+
Sbjct: 171 MAKFKKALRYPTMVIGAMA--IAFVLLIVMVIPKFKAIFDSFNAE 213
>gi|332526519|ref|ZP_08402631.1| pilus tip-associated protein [Rubrivivax benzoatilyticus JA2]
gi|332110787|gb|EGJ10964.1| pilus tip-associated protein [Rubrivivax benzoatilyticus JA2]
Length = 410
Score = 38.3 bits (88), Expect = 1.7, Method: Composition-based stats.
Identities = 27/167 (16%), Positives = 63/167 (37%), Gaps = 15/167 (8%)
Query: 167 WISNLVQKRQSS-----IKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEE 221
+ V+KR++S ++ L +++G+ + QA VA G + +++
Sbjct: 52 ILVTKVKKRRTSGGRSIKQKDIAIFTRQLATMMKAGVPLLQAFDIVAR--GASNPRMTKL 109
Query: 222 MLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRS 281
+ +++ + AF + LI++ G + L L
Sbjct: 110 LNDIRSDVETGTSLSAAFRKHPQHFD-----SLYCNLIEAGEAGGILEALLERLA--IYQ 162
Query: 282 ERLMEAEKKAASLGPKLTVPMII-FFLPVLILVIIGPAILSIIDTMK 327
E+ M ++K S M++ F + +I++ + PA + +
Sbjct: 163 EKTMALKQKIKSALMYPIAVMVVAFVVLTVIMIWVIPAFKEVFRSFG 209
>gi|116071988|ref|ZP_01469256.1| fimbrial assembly protein PilC-like [Synechococcus sp. BL107]
gi|116065611|gb|EAU71369.1| fimbrial assembly protein PilC-like [Synechococcus sp. BL107]
Length = 357
Score = 38.3 bits (88), Expect = 1.7, Method: Composition-based stats.
Identities = 25/156 (16%), Positives = 59/156 (37%), Gaps = 8/156 (5%)
Query: 174 KRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLP 233
R ++ L + ++SG+ + Q L +AE++ ++ LS+ + + LS
Sbjct: 8 ARLKVPQKDLLVFFRQLAVILQSGVPLAQGLILIAENMTNEN--LSQCVQRISSRLSAGE 65
Query: 234 NRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAAS 293
++ + T LI++ G + D L + + + A
Sbjct: 66 ELSLSLRQYPK-----VFEPLTIGLIEAGEAGGILEDVLDRIALLLEERAKIRGQIIGAL 120
Query: 294 LGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMKDH 329
+ P + + + + L++ I+ P ++ D M
Sbjct: 121 VYPVIVMVLAVSVSLALLIFIV-PRFKAMFDGMGAE 155
>gi|23308787|ref|NP_599553.2| hypothetical protein NCgl0296 [Corynebacterium glutamicum ATCC
13032]
gi|62389199|ref|YP_224601.1| membrane protein [Corynebacterium glutamicum ATCC 13032]
gi|41324532|emb|CAF18872.1| membrane protein [Corynebacterium glutamicum ATCC 13032]
Length = 258
Score = 38.3 bits (88), Expect = 1.7, Method: Composition-based stats.
Identities = 24/185 (12%), Positives = 59/185 (31%), Gaps = 10/185 (5%)
Query: 124 PIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAW 183
+ L ++ + + +I+ + + ++ +R
Sbjct: 32 GVHLFALIALFCLATVLFIVVDAYTMIAGIIIATTLFWYLRQ---THAAAQRTKQ-SLQL 87
Query: 184 PDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFY 243
L L + +G+++ A+ A D LS + + + +
Sbjct: 88 ASFLSLCAGNLRAGVTMVDAMDY-ALDNTTPDKFLSPTLQTAARQARSGGSGPRVLIDAS 146
Query: 244 NRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMI 303
+ ++ S+R+G + + + S S++ +AA GP+ T I
Sbjct: 147 ----LPDLQRLGHLWETSERHGIPLVALIDQMRSRISSKQRHGESTRAALQGPQATAV-I 201
Query: 304 IFFLP 308
+ LP
Sbjct: 202 LTVLP 206
>gi|323484184|ref|ZP_08089554.1| hypothetical protein HMPREF9474_01305 [Clostridium symbiosum
WAL-14163]
gi|323402626|gb|EGA94954.1| hypothetical protein HMPREF9474_01305 [Clostridium symbiosum
WAL-14163]
Length = 310
Score = 38.3 bits (88), Expect = 1.7, Method: Composition-based stats.
Identities = 29/200 (14%), Positives = 73/200 (36%), Gaps = 19/200 (9%)
Query: 113 LNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLV 172
+ ++ + I+F + ++ + + V V ++G P ++ +
Sbjct: 73 ADRYEAIKRLSLILFAVGAVLALLIGN----------VYMVPILGIGFSLIPIWYLRSTA 122
Query: 173 QKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFL 232
+ + A+ ++ + + +R V E++ + P+ + E +
Sbjct: 123 ASYKKHLNEELETAISIITTSY---LRTEDLIRSVKENLPYINEPVKANFEAFVYEAELI 179
Query: 233 -PNRQVAFENFYNRTQMDCVRNATQALI--QSDRYGTSIGDSLRVLVSETRSERLMEAEK 289
N A + + LI QSDR S+ ++L + + R++++E
Sbjct: 180 NANITSAINSLKMKIPNRVFHEWCGTLIQCQSDR---SMKNTLPTINQKFSDVRVVQSEL 236
Query: 290 KAASLGPKLTVPMIIFFLPV 309
+A GP+ +IF +
Sbjct: 237 EAMMQGPRREAITMIFLVIA 256
>gi|118580834|ref|YP_902084.1| type II secretion system protein [Pelobacter propionicus DSM 2379]
gi|118503544|gb|ABL00027.1| type II secretion system protein [Pelobacter propionicus DSM 2379]
Length = 402
Score = 38.3 bits (88), Expect = 1.7, Method: Composition-based stats.
Identities = 15/84 (17%), Positives = 32/84 (38%), Gaps = 2/84 (2%)
Query: 164 PSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEML 223
P ++ + R+ R+ +L+ V++G+ I QAL + + G L+E +
Sbjct: 46 PFQFLFDKRIGRRQLDTRSLLTFNQEMLVLVKAGMPIMQALNTILQRQDGSR--LTEVLR 103
Query: 224 LTIAELSFLPNRQVAFENFYNRTQ 247
++ + A E
Sbjct: 104 QVRDDVKGGASLSTALERHGRLFP 127
>gi|327441712|dbj|BAK18077.1| type II secretory pathway, component PulF [Solibacillus silvestris
StLB046]
Length = 391
Score = 38.3 bits (88), Expect = 1.8, Method: Composition-based stats.
Identities = 18/146 (12%), Positives = 53/146 (36%), Gaps = 8/146 (5%)
Query: 181 RAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFE 240
+ + + +G+S+ +A +A+ S PL + + ++ A +
Sbjct: 52 QDFVIYCRQFATLIRAGVSLVEATNILAK--QSTSKPLKKALEKVEEDVRAGIPFSDAVQ 109
Query: 241 NFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV 300
+ + G +I D+L L + + + ++ P + +
Sbjct: 110 KHPKVFP----ELFVNMMRSGEATG-NIDDTLDRLANSYEKSFRLIKKVQSTLTYPAMLL 164
Query: 301 PMIIFFLPVLILVIIGPAILSIIDTM 326
+I+ + +++ I+ P + ++M
Sbjct: 165 ILIVVVVFFMLIFIV-PTFVESFESM 189
>gi|296118088|ref|ZP_06836670.1| membrane protein [Corynebacterium ammoniagenes DSM 20306]
gi|295968974|gb|EFG82217.1| membrane protein [Corynebacterium ammoniagenes DSM 20306]
Length = 264
Score = 38.3 bits (88), Expect = 1.8, Method: Composition-based stats.
Identities = 29/191 (15%), Positives = 74/191 (38%), Gaps = 15/191 (7%)
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQS-SIKRAWPDA 186
+ILG +++ + + + V VI+ G + + ++ + KR + + A
Sbjct: 40 MILGAVFLVVFLFIAVGRLTVIVAGVIVTGTIVYS-----LTQMHDKRVNLRAEDAIAQL 94
Query: 187 LDLLLICVESGISIDQALRRVAEDI---GGQSVPLSEEMLLTIAELSFLPNRQVAFENFY 243
L + + +G + AL+R A+++ S+ + + +
Sbjct: 95 LGTMTADLRAGATFPAALKRGADELAVSATVSMDIKAAIATAAVIAHRGGSISTVL---- 150
Query: 244 NRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMI 303
T + N ++++G + + ++ S + A KA+ GP+ T ++
Sbjct: 151 -STSHPQLTNLGALCSLNEKHGIPLSNVFEQAHNQIESRKRHRAATKASLQGPQATA-IV 208
Query: 304 IFFLPVLILVI 314
+ LP+ + +
Sbjct: 209 LTLLPLAGIFM 219
>gi|167771226|ref|ZP_02443279.1| hypothetical protein ANACOL_02584 [Anaerotruncus colihominis DSM
17241]
gi|283795333|ref|ZP_06344486.1| conserved hypothetical protein [Clostridium sp. M62/1]
gi|167666645|gb|EDS10775.1| hypothetical protein ANACOL_02584 [Anaerotruncus colihominis DSM
17241]
gi|291076989|gb|EFE14353.1| conserved hypothetical protein [Clostridium sp. M62/1]
Length = 310
Score = 38.3 bits (88), Expect = 1.8, Method: Composition-based stats.
Identities = 29/200 (14%), Positives = 73/200 (36%), Gaps = 19/200 (9%)
Query: 113 LNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLV 172
+ ++ + I+F + ++ + + V V ++G P ++ +
Sbjct: 73 ADRYEAIKRLSLILFAVGAVLALLIGN----------VYMVPILGIGFSLIPIWYLRSTA 122
Query: 173 QKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFL 232
+ + A+ ++ + + +R V E++ + P+ + E +
Sbjct: 123 ASYKKHLNEELETAISIITTSY---LRTEDLIRSVKENLPYINEPVKANFEAFVYEAELI 179
Query: 233 -PNRQVAFENFYNRTQMDCVRNATQALI--QSDRYGTSIGDSLRVLVSETRSERLMEAEK 289
N A + + LI QSDR S+ ++L + + R++++E
Sbjct: 180 NANITSAINSLKMKIPNRVFHEWCGTLIQCQSDR---SMKNTLPTINQKFSDVRVVQSEL 236
Query: 290 KAASLGPKLTVPMIIFFLPV 309
+A GP+ +IF +
Sbjct: 237 EAMMQGPRREAITMIFLVIA 256
>gi|154488953|ref|ZP_02029802.1| hypothetical protein BIFADO_02262 [Bifidobacterium adolescentis
L2-32]
gi|154083090|gb|EDN82135.1| hypothetical protein BIFADO_02262 [Bifidobacterium adolescentis
L2-32]
Length = 425
Score = 38.3 bits (88), Expect = 1.8, Method: Composition-based stats.
Identities = 29/150 (19%), Positives = 56/150 (37%), Gaps = 9/150 (6%)
Query: 181 RAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFE 240
+ + L V +G+S+ +AL V E I +V L + + +A++ + A
Sbjct: 82 KDFAVMARQLATMVAAGVSLIRALNIVTEQIE--NVKLRKAVQACVAQVEGGSSFSGAMS 139
Query: 241 NFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSET-RSERLMEAEKKAASLGPKLT 299
+ + N + + G + SL + RL K A + +
Sbjct: 140 ADPDSLFPPIMVNMVR----AGETGGFLDKSLLTVADSFEADVRLQGQIKSAMAYPVVVL 195
Query: 300 VPMIIFFLPVLILVIIGPAILSIIDTMKDH 329
I L +++L+ I P S+ D+M
Sbjct: 196 G--IALILVMVMLLTIVPMFASMYDSMNAQ 223
>gi|91772406|ref|YP_565098.1| flagellar assembly protein J [Methanococcoides burtonii DSM 6242]
gi|91711421|gb|ABE51348.1| type II secretion system protein F domain [Methanococcoides
burtonii DSM 6242]
Length = 539
Score = 38.3 bits (88), Expect = 1.8, Method: Composition-based stats.
Identities = 33/194 (17%), Positives = 76/194 (39%), Gaps = 11/194 (5%)
Query: 122 VVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKR 181
V+ ++ L L + + D + + A +++ VG A + I V KR S
Sbjct: 242 VLSVVTLTLIPSFFYPVDFYVGIKGFGMILAGLIMLPVGLAARTDVI--KVNKRDESYTT 299
Query: 182 AWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFEN 241
L I SG+++ +AL ++ G+ ++ E+ +L+ + ++ +
Sbjct: 300 ---FIRSLGSIVSGSGLTLPKALMKIDPKNLGELREITIELHR---KLTIGMDSKLCWNQ 353
Query: 242 FYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVL--VSETRSERLMEAEKKAASLGPKLT 299
F + + T + S G +++ L S L ++ ++ L
Sbjct: 354 FVEDSGSYLIHKFTSVFVDSINLGGD-AEAVGELVSSSNLELVLLRMKRERISASFTFLV 412
Query: 300 VPMIIFFLPVLILV 313
VP+ + + +L+ +
Sbjct: 413 VPLHLAMVALLLFI 426
>gi|330892307|gb|EGH24968.1| putative general secretion pathway protein F [Pseudomonas syringae
pv. mori str. 301020]
Length = 401
Score = 38.3 bits (88), Expect = 1.8, Method: Composition-based stats.
Identities = 19/113 (16%), Positives = 39/113 (34%), Gaps = 7/113 (6%)
Query: 174 KRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLP 233
KR+ D L I +E+G ++ AL A ++ + + +
Sbjct: 56 KRKKISDAEVARFTDQLAILLEAGQPLESALALQAR--QSDRPAMASLLNGLLERVKGGS 113
Query: 234 NRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLME 286
+ VA + N +L+++ +G++L L + R M
Sbjct: 114 SLSVAMGA-----EHRTFSNFYLSLVRAGEAAGMLGETLSQLATNLERSRAMR 161
>gi|262163781|ref|ZP_06031521.1| general secretion pathway protein F [Vibrio mimicus VM223]
gi|262027761|gb|EEY46426.1| general secretion pathway protein F [Vibrio mimicus VM223]
Length = 393
Score = 38.3 bits (88), Expect = 1.8, Method: Composition-based stats.
Identities = 23/151 (15%), Positives = 53/151 (35%), Gaps = 9/151 (5%)
Query: 166 VWISNLVQKRQSSIKRA-WPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLL 224
V ++ + R L L ESG+ +DQ + + E+ ++ +
Sbjct: 40 VMLTEQRSSGAKQLSREVLITTLRELATLRESGMPLDQCINSLLEN--STDRQMALVLKR 97
Query: 225 TIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSET-RSER 283
+++ + A Q D ++++ +G++L + R E+
Sbjct: 98 LHSDIESGSSLSEAIAA-----QPDSFPYYVSSMLRLGEASGQLGEALFSISERIEREEK 152
Query: 284 LMEAEKKAASLGPKLTVPMIIFFLPVLILVI 314
L+ K A + L + + + + VI
Sbjct: 153 LVSEVKSALTYPAFLLIVCVATIFFMFLYVI 183
>gi|238916728|ref|YP_002930245.1| type IV pilus assembly protein PilC [Eubacterium eligens ATCC
27750]
gi|238872088|gb|ACR71798.1| type IV pilus assembly protein PilC [Eubacterium eligens ATCC
27750]
Length = 425
Score = 38.3 bits (88), Expect = 1.8, Method: Composition-based stats.
Identities = 27/151 (17%), Positives = 59/151 (39%), Gaps = 11/151 (7%)
Query: 180 KRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAF 239
R +++G+S+ AL +AE ++ L E ++ T + + N +
Sbjct: 84 ARDMSVFCRQFASILKAGVSVINALEMLAE--QTENKKLKEAIVNTQSNVEKGENLSDSM 141
Query: 240 ENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSET-RSERLMEAEKKAASLGPKL 298
Q D + ++++ S+ +SL + + + +L KKA L
Sbjct: 142 R------QNDAFPSILIDMVRAGEASGSLENSLTRMAIQFEKDAKLNGIVKKAMMYPIVL 195
Query: 299 TVPMIIFFLPVLILVIIGPAILSIIDTMKDH 329
MI + +L VI P+ +++ + +
Sbjct: 196 LCVMIGVIIVMLTFVI--PSFMTMFEDLDSE 224
>gi|229816771|ref|ZP_04447053.1| hypothetical protein BIFANG_02018 [Bifidobacterium angulatum DSM
20098]
gi|229785787|gb|EEP21901.1| hypothetical protein BIFANG_02018 [Bifidobacterium angulatum DSM
20098]
Length = 448
Score = 38.3 bits (88), Expect = 1.8, Method: Composition-based stats.
Identities = 22/60 (36%), Positives = 29/60 (48%)
Query: 263 RYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
+G S LR+ V+E E+ AA L +L P + FLP IL+ I PAI S
Sbjct: 387 HHGASPMAQLRLAVAEHERAERSAIEQSAARLSIQLLSPTGLCFLPAFILIGIIPAIASF 446
>gi|171060103|ref|YP_001792452.1| general secretion pathway protein F [Leptothrix cholodnii SP-6]
gi|170777548|gb|ACB35687.1| general secretion pathway protein F [Leptothrix cholodnii SP-6]
Length = 405
Score = 38.3 bits (88), Expect = 1.8, Method: Composition-based stats.
Identities = 23/126 (18%), Positives = 47/126 (37%), Gaps = 12/126 (9%)
Query: 190 LLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMD 249
L V +G+ +++AL + ++ + E + AE++ A + R D
Sbjct: 75 LAGLVGAGLPLERALTALGDE--AEDPKQGELLAHLRAEVNAGSPFARALAS-APREFDD 131
Query: 250 CVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPV 309
R A QS + G L L + + ++ L P I+ + +
Sbjct: 132 VYRAVVAAGEQSGQLG----RVLDKLADDLEERQALK-----GKLIGATLYPAIVSLVAI 182
Query: 310 LILVII 315
+I+V +
Sbjct: 183 VIVVFL 188
>gi|302390459|ref|YP_003826280.1| Type II secretion system F domain protein [Thermosediminibacter
oceani DSM 16646]
gi|302201087|gb|ADL08657.1| Type II secretion system F domain protein [Thermosediminibacter
oceani DSM 16646]
Length = 404
Score = 38.3 bits (88), Expect = 1.8, Method: Composition-based stats.
Identities = 19/114 (16%), Positives = 38/114 (33%), Gaps = 10/114 (8%)
Query: 181 RAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFE 240
+ L + +G+ I AL+ +A + ++ L + + L A
Sbjct: 63 QDLAVFCRQLATMLGAGLPIVPALQILA--MQAENKILRRNIEEIVRSLEGGETFHEALA 120
Query: 241 NFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASL 294
I++ G S+ ++L L + ER E ++K S
Sbjct: 121 RL------QVFPPIMVHAIEAAELGGSLDEALEELAAHL--EREHELQEKVKSA 166
>gi|313683366|ref|YP_004061104.1| type ii secretion system f domain [Sulfuricurvum kujiense DSM
16994]
gi|313156226|gb|ADR34904.1| Type II secretion system F domain [Sulfuricurvum kujiense DSM
16994]
Length = 412
Score = 37.9 bits (87), Expect = 1.9, Method: Composition-based stats.
Identities = 21/132 (15%), Positives = 48/132 (36%), Gaps = 13/132 (9%)
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
LD L + +++G+ I+ L ++ + L ++ + + A + +
Sbjct: 77 FLDQLSVMLDAGMPINICLADTVDN--TEDPMLHAIFSEVLSNIESGQSLSFALSKYQTQ 134
Query: 246 TQMDCVRNATQALIQSDRYGT---SIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPM 302
+ ++ GT +I L + + + R M KKA + + M
Sbjct: 135 LG----KLTLSMFELGEQTGTLNIAIAK-LSTIFQQIHNNRQML--KKATRYPLFIIIAM 187
Query: 303 -IIFFLPVLILV 313
I F + + +V
Sbjct: 188 SIAFIIVITFIV 199
>gi|311744031|ref|ZP_07717837.1| integral membrane protein [Aeromicrobium marinum DSM 15272]
gi|311313161|gb|EFQ83072.1| integral membrane protein [Aeromicrobium marinum DSM 15272]
Length = 289
Score = 37.9 bits (87), Expect = 1.9, Method: Composition-based stats.
Identities = 15/100 (15%), Positives = 33/100 (33%), Gaps = 1/100 (1%)
Query: 216 VPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRY-GTSIGDSLRV 274
++ ++ + L VA + F + AL+ + + G + D L
Sbjct: 133 PSIAPQLTILADRLRVRTPLPVALQRFADDLDDPSADLIVAALMLNAKLRGPGLRDVLTS 192
Query: 275 LVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVI 314
L R E M A + +V +++ + +
Sbjct: 193 LADSAREELEMRRRVGAGRASTRRSVQIVMAISIAFVFGL 232
>gi|229194287|ref|ZP_04321126.1| hypothetical protein bcere0002_58710 [Bacillus cereus ATCC 10876]
gi|228589186|gb|EEK47166.1| hypothetical protein bcere0002_58710 [Bacillus cereus ATCC 10876]
Length = 292
Score = 37.9 bits (87), Expect = 1.9, Method: Composition-based stats.
Identities = 22/194 (11%), Positives = 63/194 (32%), Gaps = 16/194 (8%)
Query: 125 IIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWP 184
+ + + ++ F + + ++ GF P + ++ +
Sbjct: 66 LSGMSIAAVFYFSFGRDP---------FTLITVLSGFLVPRFLLYQRKKRYYLIVIDRLS 116
Query: 185 DALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYN 244
+ + ++ + A R + + + EE+ L AF F
Sbjct: 117 IYMKAVANALQIS---NNAKRVLVQVKPMMHESIQEEIEKVSLLLEGGTTMHRAFREFNE 173
Query: 245 RTQMDCVRNATQALIQ-SDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVP-- 301
+ + L S GT+ L + + ++L A +++ +
Sbjct: 174 TFNFRELVFFHEMLEVCSREGGTNSVQVLLDIAEDFEKQKLYLARLRSSLSQAQRAFVQN 233
Query: 302 -MIIFFLPVLILVI 314
+I+ +P++I+++
Sbjct: 234 CLIVIAMPIVIVLM 247
>gi|73669465|ref|YP_305480.1| flagellar assembly protein J [Methanosarcina barkeri str. Fusaro]
gi|72396627|gb|AAZ70900.1| flagella related protein FlaJ [Methanosarcina barkeri str. Fusaro]
Length = 517
Score = 37.9 bits (87), Expect = 1.9, Method: Composition-based stats.
Identities = 35/218 (16%), Positives = 84/218 (38%), Gaps = 15/218 (6%)
Query: 99 VNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGY 158
KL RS+ I + R+++P + + + + G + L+
Sbjct: 213 EKKLHTLSRRSKEQEIIRFLSRILLPAGAISVAALILIGTELQYT-----------LLAI 261
Query: 159 VGFCAPSVWISNLVQKRQSSIKRAWPDALDLL-LICVESGISIDQALRRVAEDIGGQSVP 217
F P + + + + + ++P + L + +GI+I A+ + ++ G P
Sbjct: 262 TFFTLPIGFFAMVDDRNINERDSSFPAFVKTLGTLAGTTGITIRSAMEDLDKETIGGLRP 321
Query: 218 LSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVS 277
EE+ A LS ++ +E F T + + ++ + G + ++ S
Sbjct: 322 EVEELH---AWLSLGLKSKLCWEKFIGETGSELINRCSRIFTDAVELGGDPAEIGEIVSS 378
Query: 278 ETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVII 315
+ + L+ +++ S G + + + L++ II
Sbjct: 379 SSLAIVLLRMKRQLVSSGFRGLAITLHAVMIGLLIFII 416
>gi|20091873|ref|NP_617948.1| flagellar assembly protein J [Methanosarcina acetivorans C2A]
gi|19917067|gb|AAM06428.1| flagella accessory protein J [Methanosarcina acetivorans C2A]
Length = 543
Score = 37.9 bits (87), Expect = 1.9, Method: Composition-based stats.
Identities = 32/195 (16%), Positives = 74/195 (37%), Gaps = 13/195 (6%)
Query: 122 VVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKR 181
+ +I L + +I D ++ V A +++ VG A + + KR
Sbjct: 242 ALAVILLTVIPAFIGSVDFFIDIKGVGMVLAGVILMPVGMAANKDI--DKINKR----DE 295
Query: 182 AWPDALDLL-LICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFE 240
+ + L I SG+++ +AL ++ G+ +S+E+ +A + + +
Sbjct: 296 CFTTFIRSLGSIVSGSGLTVPKALLKIDPKNLGELRDMSQELYKKLA---SGLDPALCWG 352
Query: 241 NFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVL--VSETRSERLMEAEKKAASLGPKL 298
F T + T + + G + + + L S L ++ A L
Sbjct: 353 RFVGETGSYLIYKLTSVFVDAVNLGGN-AEVVGELVSSSNLELVLLRMKRERIAKGFSSL 411
Query: 299 TVPMIIFFLPVLILV 313
+P+ + + +L+ +
Sbjct: 412 VIPLHVAMVALLLFI 426
>gi|262192440|ref|ZP_06050592.1| general secretion pathway protein F [Vibrio cholerae CT 5369-93]
gi|262031704|gb|EEY50290.1| general secretion pathway protein F [Vibrio cholerae CT 5369-93]
Length = 393
Score = 37.9 bits (87), Expect = 1.9, Method: Composition-based stats.
Identities = 25/151 (16%), Positives = 54/151 (35%), Gaps = 9/151 (5%)
Query: 166 VWISNLVQKRQSSIKRA-WPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLL 224
V ++ + R L L ESG+ +DQ + + E+ + + L +
Sbjct: 40 VMLAEQRSSGVKQLSREVLITTLRELATLRESGMPLDQCINSLLENSADKQMVL--VLKR 97
Query: 225 TIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSET-RSER 283
+++ + A Q D ++++ +G++L + R E+
Sbjct: 98 LHSDIESGSSLSEAIAA-----QPDSFPYYVSSMLRLGEASGQLGNALFSISERIEREEK 152
Query: 284 LMEAEKKAASLGPKLTVPMIIFFLPVLILVI 314
L+ K A + L V + + + VI
Sbjct: 153 LVSEVKSALTYPAFLLVVCVATIFFMFLYVI 183
>gi|21323066|dbj|BAB97695.1| Hypothetical membrane protein [Corynebacterium glutamicum ATCC
13032]
Length = 272
Score = 37.9 bits (87), Expect = 1.9, Method: Composition-based stats.
Identities = 24/185 (12%), Positives = 59/185 (31%), Gaps = 10/185 (5%)
Query: 124 PIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAW 183
+ L ++ + + +I+ + + ++ +R
Sbjct: 46 GVHLFALIALFCLATVLFIVVDAYTMIAGIIIATTLFWYLRQ---THAAAQRTKQ-SLQL 101
Query: 184 PDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFY 243
L L + +G+++ A+ A D LS + + + +
Sbjct: 102 ASFLSLCAGNLRAGVTMVDAMDY-ALDNTTPDKFLSPTLQTAARQARSGGSGPRVLIDAS 160
Query: 244 NRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMI 303
+ ++ S+R+G + + + S S++ +AA GP+ T I
Sbjct: 161 ----LPDLQRLGHLWETSERHGIPLVALIDQMRSRISSKQRHGESTRAALQGPQATAV-I 215
Query: 304 IFFLP 308
+ LP
Sbjct: 216 LTVLP 220
>gi|329939413|ref|ZP_08288749.1| type II secretion system F protein [Streptomyces griseoaurantiacus
M045]
gi|329301642|gb|EGG45536.1| type II secretion system F protein [Streptomyces griseoaurantiacus
M045]
Length = 282
Score = 37.9 bits (87), Expect = 2.0, Method: Composition-based stats.
Identities = 27/124 (21%), Positives = 52/124 (41%), Gaps = 6/124 (4%)
Query: 197 GISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQ 256
G + A R V E + G P+ E + AE+ A+ + +
Sbjct: 153 GATPVTAARAVGEALTG---PVGERLATGAAEVRLGGEPAAAWRRLAE---LPGAAPLAR 206
Query: 257 ALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIG 316
L ++ G + L ++ R++R A +A G +T+P+ +FFLP ++V +
Sbjct: 207 LLERAGDSGAPAAVPVARLAADARADRGRAATARARRAGVLITLPLGLFFLPAFLVVGVL 266
Query: 317 PAIL 320
P ++
Sbjct: 267 PVVI 270
>gi|38232936|ref|NP_938703.1| hypothetical protein DIP0315 [Corynebacterium diphtheriae NCTC
13129]
gi|38199194|emb|CAE48819.1| Putative secreted protein [Corynebacterium diphtheriae]
Length = 192
Score = 37.9 bits (87), Expect = 2.0, Method: Composition-based stats.
Identities = 26/136 (19%), Positives = 47/136 (34%), Gaps = 5/136 (3%)
Query: 187 LDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRT 246
LD+ + +G+S+ QA VA +E A S A
Sbjct: 57 LDIFVATSRAGLSLAQACAAVAATTSSAVD--AEPWRQVAAMASLGVPMSRACTPLA--- 111
Query: 247 QMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFF 306
+ + + +D G SI + R + +A G + +P+ + F
Sbjct: 112 NTEGLVAVVAVMRAADASGASIAAGCERIARSLRDHAVDTYTAQAERTGVLIALPLTLCF 171
Query: 307 LPVLILVIIGPAILSI 322
LP L+ + P +S+
Sbjct: 172 LPAFFLLGLAPVAISL 187
>gi|325294584|ref|YP_004281098.1| type II secretion system F domain [Desulfurobacterium
thermolithotrophum DSM 11699]
gi|325065032|gb|ADY73039.1| Type II secretion system F domain [Desulfurobacterium
thermolithotrophum DSM 11699]
Length = 402
Score = 37.9 bits (87), Expect = 2.1, Method: Composition-based stats.
Identities = 22/152 (14%), Positives = 58/152 (38%), Gaps = 17/152 (11%)
Query: 180 KRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAF 239
+ L +++GI + +A+ ++E+ + M + L + +
Sbjct: 63 VQELAVFFRTLATLLDAGIPLIEAIESLSENFKEDRKKIF--MTKIVNNLREGKSLSESL 120
Query: 240 ENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLT 299
+ + + + S G ++ SL ++ S E+ +++ L
Sbjct: 121 K--IAGIKDPVIVSFVS----SGEKGGTLVQSLEIIASILEKR-----EELKSTIINALI 169
Query: 300 VPMIIFF----LPVLILVIIGPAILSIIDTMK 327
P+++ + V +++ + P I+SI +MK
Sbjct: 170 YPVVLLVVAIGVVVFMMLSVIPKIVSIYTSMK 201
>gi|160940638|ref|ZP_02087981.1| hypothetical protein CLOBOL_05532 [Clostridium bolteae ATCC
BAA-613]
gi|158436373|gb|EDP14140.1| hypothetical protein CLOBOL_05532 [Clostridium bolteae ATCC
BAA-613]
Length = 306
Score = 37.9 bits (87), Expect = 2.1, Method: Composition-based stats.
Identities = 34/209 (16%), Positives = 79/209 (37%), Gaps = 27/209 (12%)
Query: 114 NILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQ 173
N +V+ + ++F + ++ + + L + ++G AP ++
Sbjct: 73 NRFTMVKRISVLLFSLGAVVSLLLNNPFL----------IPILGAGFALAPVWYLRATAS 122
Query: 174 KRQSSIKRAWPDALDLLLIC-VESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFL 232
+ + A+ ++ + SG ++ V E+I + P+ I E L
Sbjct: 123 VYKKHLNEELETAISVVTTSYLRSG----DLMKAVKENIPYLNPPVKGNFEAFITEAEML 178
Query: 233 -PNRQVAFENFYNRTQMDCVRNATQALI--QSDRYGTSIGDSLRVLVSETRSERLMEAEK 289
N A + + LI QSDR ++ ++L V + R+++ E
Sbjct: 179 NANMISAINSLKMKIPNRIFHEWCNTLIQCQSDR---NMMNTLTFTVQKFSDMRIVQTEL 235
Query: 290 KAASLGPK-----LTVPMIIFFLPVLILV 313
+A PK + +++ +P+L ++
Sbjct: 236 EAIINEPKREAFAMMF-LVLCNIPLLYVL 263
>gi|238019095|ref|ZP_04599521.1| hypothetical protein VEIDISOL_00957 [Veillonella dispar ATCC 17748]
gi|237864350|gb|EEP65640.1| hypothetical protein VEIDISOL_00957 [Veillonella dispar ATCC 17748]
Length = 391
Score = 37.9 bits (87), Expect = 2.2, Method: Composition-based stats.
Identities = 28/139 (20%), Positives = 54/139 (38%), Gaps = 16/139 (11%)
Query: 190 LLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAE-LSFLPNRQVAFENFYNRTQM 248
L + +ESG+ + +AL+ + + G + + E + A
Sbjct: 65 LGLLIESGVPLRRALQLLCQGKRGL-------LYTALYESIERGQTLSQALR--SESCP- 114
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP 308
AL++S ++G+SL+ + ER + + +A P + ++ F
Sbjct: 115 ----AIALALLESGEAAGTLGESLQYISRHYDWERQLRQKVISAISYPLFLLVLMNIFFL 170
Query: 309 VLILVIIGPAILSIIDTMK 327
V IL II P+ + TM
Sbjct: 171 VTILFII-PSFEKVFTTMH 188
>gi|222099572|ref|YP_002534140.1| General secretion pathway protein F [Thermotoga neapolitana DSM
4359]
gi|221571962|gb|ACM22774.1| General secretion pathway protein F [Thermotoga neapolitana DSM
4359]
Length = 399
Score = 37.9 bits (87), Expect = 2.2, Method: Composition-based stats.
Identities = 24/134 (17%), Positives = 53/134 (39%), Gaps = 12/134 (8%)
Query: 182 AWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFEN 241
L I + +GI I +AL +A S+ I E++ +
Sbjct: 61 EIATFCRQLSIMISAGIRIKEALNILARQ-----EVFSKRFRKIILEIAINVETGDTLAD 115
Query: 242 FYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVP 301
+ + + N +++++ G + +LR S + ++ E K+A + P
Sbjct: 116 AFRKVGVFD--NVLISMLEAGEEGGVLDRTLRRAADFYESVKRLQDEVKSA-----MAYP 168
Query: 302 MIIFFLPVLILVII 315
+ + F V+I+++I
Sbjct: 169 LFVLFFAVVIVLVI 182
>gi|223940083|ref|ZP_03631947.1| type II secretion system protein [bacterium Ellin514]
gi|223891268|gb|EEF57765.1| type II secretion system protein [bacterium Ellin514]
Length = 403
Score = 37.9 bits (87), Expect = 2.2, Method: Composition-based stats.
Identities = 17/150 (11%), Positives = 52/150 (34%), Gaps = 16/150 (10%)
Query: 182 AWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFEN 241
L +++G+++ Q+L+ +AE + + + + A + + A
Sbjct: 62 DLVIFTRQLATMLDAGLAMVQSLQALAE--QTTNKVMRDVIKDVTARVEAGDSFSEALVK 119
Query: 242 FYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVP 301
++ + G + + L L + + + + K+A + P
Sbjct: 120 HPK-----VFNRLYVCMVGAGEKGGLLSEILARLATYLENAARLRRKVKSA-----MMYP 169
Query: 302 MIIFFLP----VLILVIIGPAILSIIDTMK 327
++ + + ++V + P I ++
Sbjct: 170 TVVTCVAISITIFLMVKVVPVFGEIFESFG 199
>gi|56476318|ref|YP_157907.1| general secretion pathway protein F [Aromatoleum aromaticum EbN1]
gi|56312361|emb|CAI07006.1| general secretion pathway protein F [Aromatoleum aromaticum EbN1]
Length = 438
Score = 37.9 bits (87), Expect = 2.2, Method: Composition-based stats.
Identities = 20/139 (14%), Positives = 50/139 (35%), Gaps = 8/139 (5%)
Query: 190 LLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMD 249
L + + +G+ +D+AL+ + Q ++ + + + A +
Sbjct: 108 LAVMLRAGLPLDRALKVMVS--MSQRPSITALLDDLLDSVKSGKGFSQALQPHQRLFG-- 163
Query: 250 CVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPV 309
+++S G +G+ L L R + E ++L + ++
Sbjct: 164 ---EFYINMVRSGEAGGQLGEVLSRLAEHLERTRALR-ESVVSALIYPAILVLVAAVSVF 219
Query: 310 LILVIIGPAILSIIDTMKD 328
L+L + P S+ + M +
Sbjct: 220 LMLAFVVPQFESLFNDMGE 238
>gi|258652940|ref|YP_003202096.1| type II secretion system protein [Nakamurella multipartita DSM
44233]
gi|258556165|gb|ACV79107.1| type II secretion system protein [Nakamurella multipartita DSM
44233]
Length = 302
Score = 37.9 bits (87), Expect = 2.3, Method: Composition-based stats.
Identities = 28/185 (15%), Positives = 55/185 (29%), Gaps = 9/185 (4%)
Query: 114 NILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQ 173
+ +R I ++ G + G L +P A G + + P + +
Sbjct: 41 RLFAAIRSPSMSIRVVGGALAAIGVLALTGWPV-----AAAAAGGLIWAWPRLVGGVQAE 95
Query: 174 KRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLP 233
+RQ + A + L + S++ AL S + +L + ++
Sbjct: 96 QRQIARLDALVAWTESLRDTIAGHHSLENALP---SSAVHASPLIRPALLRLVGQIRARV 152
Query: 234 NRQVAFENFYNRTQMDCVRNATQALIQ-SDRYGTSIGDSLRVLVSETRSERLMEAEKKAA 292
A + L+ + R G + L L + R E M A
Sbjct: 153 PVDRALVMLADELNDPSADLVIAELVLSAKRRGDGLQQRLSSLATTAREELEMRRRIFAD 212
Query: 293 SLGPK 297
+
Sbjct: 213 RAEIR 217
>gi|328759518|gb|EGF73127.1| membrane associated protein [Propionibacterium acnes HL099PA1]
Length = 297
Score = 37.9 bits (87), Expect = 2.3, Method: Composition-based stats.
Identities = 33/227 (14%), Positives = 84/227 (37%), Gaps = 8/227 (3%)
Query: 102 LRAAGFRSEYSLNILLVVRLVVPIIFLILGIIW--IFGYDKLLEYPFQLRVGAVILIGYV 159
+RAA + RL+ + IL + + + + + +
Sbjct: 75 MRAALRLQGATPEAFYGRRLIWALCGAILPWLLNAVAIAVGVNFPGLLIPAALCVALAGA 134
Query: 160 GFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLS 219
G+ P+ + A +DL+++ + + AL A PL
Sbjct: 135 GWMLPAARLRAAAGPTNDDSFEALLVFIDLVVLERLANETSVDALTNAAN---MSDAPLF 191
Query: 220 EEMLLTIAELSFL-PNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSE 278
++ + + + + + ++ + + + + G S+ DS R V+E
Sbjct: 192 VQIRQVLNRAALENVDPWNGLDRLADDIKLPELTDVVS-IARLQEEGASLVDSFRARVAE 250
Query: 279 TRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDT 325
R L+ ++++ ++ +L + I+ ++L+++G A L++I
Sbjct: 251 LRDAYLLRLQQESTTITQRLGLWTIL-QAGSVMLILMGAAALTLITA 296
>gi|289450180|ref|YP_003474587.1| translation initiation factor IF-2 [Clostridiales genomosp. BVAB3
str. UPII9-5]
gi|289184727|gb|ADC91152.1| translation initiation factor IF-2 [Clostridiales genomosp. BVAB3
str. UPII9-5]
Length = 1155
Score = 37.9 bits (87), Expect = 2.4, Method: Composition-based stats.
Identities = 22/116 (18%), Positives = 57/116 (49%), Gaps = 12/116 (10%)
Query: 168 ISNLVQKRQSSIKRAWPDA-LDLLLI--CVESGISIDQALRRVAEDIGGQSVPLSEEMLL 224
I + R +IK+A P ++++ + E+G + Q VA++ + L+E+ +
Sbjct: 873 IRAMTDARGKTIKQAGPSVPVEIIGLPGVPEAGETFYQ----VADE--KTARVLAEKRRI 926
Query: 225 TIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGT--SIGDSLRVLVSE 278
E S + +++ +N ++R V+ +I++D G+ ++ +++ L ++
Sbjct: 927 KNREASIGGSSRMSLDNLFSRMAAGEVKEL-NLIIKADVNGSVEAVDQAMQKLSND 981
>gi|255066086|ref|ZP_05317941.1| 3-isopropylmalate dehydrogenase [Neisseria sicca ATCC 29256]
gi|255049631|gb|EET45095.1| 3-isopropylmalate dehydrogenase [Neisseria sicca ATCC 29256]
Length = 413
Score = 37.9 bits (87), Expect = 2.4, Method: Composition-based stats.
Identities = 24/152 (15%), Positives = 53/152 (34%), Gaps = 12/152 (7%)
Query: 164 PSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEML 223
P K++ + L +++G+ + QA VA G + ++E ++
Sbjct: 56 PLRISKVKATKKRRITQEDITVFTRQLATMMKAGLPLMQAFEIVAR--GHSNPSMTEMLM 113
Query: 224 LTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSER 283
A++ +F + LI + G + L L E+
Sbjct: 114 QVRADVEQGSALGKSFAKYPKYFD-----RFYCNLIAAGEAGGVLESLLDKLA--VYKEK 166
Query: 284 LMEAEKKAASLGPKLTVPMIIFFLPVLILVII 315
+KK + LT P+ I + + ++ ++
Sbjct: 167 TQAIKKKVKTA---LTYPISIVVVAIALIFVM 195
>gi|134298810|ref|YP_001112306.1| hypothetical protein Dred_0946 [Desulfotomaculum reducens MI-1]
gi|134051510|gb|ABO49481.1| conserved hypothetical protein [Desulfotomaculum reducens MI-1]
Length = 268
Score = 37.9 bits (87), Expect = 2.4, Method: Composition-based stats.
Identities = 35/175 (20%), Positives = 64/175 (36%), Gaps = 14/175 (8%)
Query: 88 NLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQ 147
L +L E+I KL + +LL L ++F ++G + F +
Sbjct: 41 RLMNLLTPEDIQEKLE---IIDKEPKKVLLNA-LTYGLLFGLIGTLATF------KKLGG 90
Query: 148 LRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVES-GISIDQALRR 206
L + I++ +G + K Q+ + P ++ +E GI+ +AL
Sbjct: 91 LSIMVGIILALLGLVLGRIAAEQEYSKWQAKVFEGVPTLVNFFPAFLEVPGITPREAL-- 148
Query: 207 VAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQS 261
A + S PL EM + + + A NF R + C+ L +
Sbjct: 149 -ALTLPFLSEPLKSEMWSALDVIQREGKAKKAMNNFAKRLKHPCIDALAIRLASA 202
>gi|84498359|ref|ZP_00997156.1| hypothetical protein JNB_19768 [Janibacter sp. HTCC2649]
gi|84381859|gb|EAP97742.1| hypothetical protein JNB_19768 [Janibacter sp. HTCC2649]
Length = 200
Score = 37.6 bits (86), Expect = 2.4, Method: Composition-based stats.
Identities = 11/69 (15%), Positives = 28/69 (40%)
Query: 109 SEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWI 168
E V ++ + ++ +I + P L +G ++ + +VG + +
Sbjct: 20 HERVQKQFRVAKIAALSVLFVVALILGAVSTAITPGPTGLLIGLLVFLAFVGLFLGLIAL 79
Query: 169 SNLVQKRQS 177
S ++RQ+
Sbjct: 80 SAAKERRQA 88
>gi|227822842|ref|YP_002826814.1| general secretion pathway protein F, GspF [Sinorhizobium fredii
NGR234]
gi|227341843|gb|ACP26061.1| general secretion pathway protein F, GspF [Sinorhizobium fredii
NGR234]
Length = 404
Score = 37.6 bits (86), Expect = 2.5, Method: Composition-based stats.
Identities = 30/134 (22%), Positives = 55/134 (41%), Gaps = 9/134 (6%)
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
L I +E+G +ID AL+ V +D + EE+ +A + + AF + N
Sbjct: 70 FFSELQILLEAGFTIDAALKTVVDDREMAAG--REELSNLVAAVMAGGSFSSAFAHMQNA 127
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
AL+ S + + L ++ AE L P + +++F
Sbjct: 128 PPE------VTALLLSGEQAGRLEQVVASLAQSFEDQKARRAEAIETLLYPAFLLAVMLF 181
Query: 306 FLPVLILVIIGPAI 319
+ V++ V++ PAI
Sbjct: 182 SIGVIMFVLV-PAI 194
>gi|260886328|ref|ZP_05897591.1| general secretion pathway protein F [Selenomonas sputigena ATCC
35185]
gi|330839698|ref|YP_004414278.1| Type II secretion system F domain protein [Selenomonas sputigena
ATCC 35185]
gi|260864047|gb|EEX78547.1| general secretion pathway protein F [Selenomonas sputigena ATCC
35185]
gi|329747462|gb|AEC00819.1| Type II secretion system F domain protein [Selenomonas sputigena
ATCC 35185]
Length = 397
Score = 37.6 bits (86), Expect = 2.5, Method: Composition-based stats.
Identities = 25/153 (16%), Positives = 54/153 (35%), Gaps = 14/153 (9%)
Query: 176 QSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNR 235
+ + D L + +ESG ++ +AL A + Q+ L+ T E+
Sbjct: 256 RLRLDLELMTLFDTLAVLMESGSALHEAL--AASEGVVQNRFLAALFSRTRREVERGGTL 313
Query: 236 QVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLG 295
A V L+++ + + L R M AE+ A
Sbjct: 314 AAALAG-------SVVPPLVWELVRAGEHTGELAAMLEKAADFCRFAGEMRAERMEA--- 363
Query: 296 PKLTVPMIIFFLPVLILVIIGPAILSIIDTMKD 328
+ P+++ FL ++ ++ L +++ +
Sbjct: 364 --MLEPLLVLFLGAVVGTVVLAVALPLLEMIGS 394
>gi|254478362|ref|ZP_05091741.1| hypothetical protein CDSM653_1507 [Carboxydibrachium pacificum DSM
12653]
gi|214035720|gb|EEB76415.1| hypothetical protein CDSM653_1507 [Carboxydibrachium pacificum DSM
12653]
Length = 249
Score = 37.6 bits (86), Expect = 2.5, Method: Composition-based stats.
Identities = 29/187 (15%), Positives = 70/187 (37%), Gaps = 28/187 (14%)
Query: 148 LRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRA-WPDALDLLLICVESGISIDQALRR 206
L + +V + + F W + R+S + P AL++ + +E G++ + +
Sbjct: 72 LALFSVFIGSAIMFY--QYWRKPIDSYRESFYREEELPAALEIFISGLEVGMNKENIISY 129
Query: 207 VAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGT 266
+ G L E L + + A +++ D R +A+ T
Sbjct: 130 IVRTREGVVRDLLYE---AQIRLDTGSSLKDALTFAADKSLNDHFRRFVKAI-------T 179
Query: 267 SIGDSLRVLVSETRS-----------ERLMEAEKKAASLGPKLTVPMIIFFLPVLILVII 315
+S++ + R + + ++AA L L P+ + + ++++
Sbjct: 180 GEYESVK----DMRENLEELLEEVEEKNYNQKIERAAVLDNSLFFPIFLGYFVPILIMFA 235
Query: 316 GPAILSI 322
P ++S+
Sbjct: 236 LPFVISL 242
>gi|261401635|ref|ZP_05987760.1| 3-isopropylmalate dehydrogenase [Neisseria lactamica ATCC 23970]
gi|296313613|ref|ZP_06863554.1| 3-isopropylmalate dehydrogenase [Neisseria polysaccharea ATCC
43768]
gi|313667735|ref|YP_004048019.1| pilus-assembly protein [Neisseria lactamica ST-640]
gi|269208274|gb|EEZ74729.1| 3-isopropylmalate dehydrogenase [Neisseria lactamica ATCC 23970]
gi|296839851|gb|EFH23789.1| 3-isopropylmalate dehydrogenase [Neisseria polysaccharea ATCC
43768]
gi|309378660|emb|CBX22731.1| pilus assembly protein PilG [Neisseria lactamica Y92-1009]
gi|313005197|emb|CBN86630.1| pilus-assembly protein [Neisseria lactamica 020-06]
Length = 410
Score = 37.6 bits (86), Expect = 2.5, Method: Composition-based stats.
Identities = 24/155 (15%), Positives = 48/155 (30%), Gaps = 15/155 (9%)
Query: 164 PSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEML 223
P ++ + L +++G+ + QA VA G + ++E ++
Sbjct: 53 PLQVTRVKTSSKRKITQEDITVFTRQLSTMIKAGLPLMQAFEIVAR--GHGNPSMTEMLM 110
Query: 224 LTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSER 283
+ + AF N L+ + G + L L +
Sbjct: 111 EIRSNVEQGSTLSRAFSNHPKYFD-----RFYCNLVAAGETGGVLESLLDKLAVYKEKTQ 165
Query: 284 LMEAEKKAA--------SLGPKLTVPMIIFFLPVL 310
+ + K A ++ L M+IF LP
Sbjct: 166 AIRKKVKTALTYPVSVIAVAIGLVFVMMIFVLPAF 200
>gi|261363883|ref|ZP_05976766.1| 3-isopropylmalate dehydrogenase [Neisseria mucosa ATCC 25996]
gi|288567880|gb|EFC89440.1| 3-isopropylmalate dehydrogenase [Neisseria mucosa ATCC 25996]
Length = 413
Score = 37.6 bits (86), Expect = 2.5, Method: Composition-based stats.
Identities = 24/152 (15%), Positives = 53/152 (34%), Gaps = 12/152 (7%)
Query: 164 PSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEML 223
P K++ + L +++G+ + QA VA G + ++E ++
Sbjct: 56 PLRISKVKATKKRRITQEDITVFTRQLATMMKAGLPLMQAFEIVAR--GHSNPSMTEMLM 113
Query: 224 LTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSER 283
A++ +F + LI + G + L L E+
Sbjct: 114 QVRADVEQGSALGKSFAKYPKYFD-----RFYCNLIAAGEAGGVLESLLDKLA--VYKEK 166
Query: 284 LMEAEKKAASLGPKLTVPMIIFFLPVLILVII 315
+KK + LT P+ I + + ++ ++
Sbjct: 167 TQAIKKKVKTA---LTYPISIVVVAIALIFVM 195
>gi|205374338|ref|ZP_03227136.1| hypothetical protein Bcoam_14529 [Bacillus coahuilensis m4-4]
Length = 403
Score = 37.6 bits (86), Expect = 2.5, Method: Composition-based stats.
Identities = 22/143 (15%), Positives = 54/143 (37%), Gaps = 8/143 (5%)
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
L +E+G+++ A + ++E +S PL + ++ E+ A
Sbjct: 67 FLRQFATLLEAGVTVVDATKILSE--QTESKPLRKALIEVEKEIRDGNPISDALSQHKKI 124
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
+ + + G S+ ++L +L ++ +K ++L V +I
Sbjct: 125 FE----PMFVNMMRAGEATG-SLDETLNMLAVHY-EKQYQTKQKIVSALAYPAVVGLIAI 178
Query: 306 FLPVLILVIIGPAILSIIDTMKD 328
+ + +LV + P + + D
Sbjct: 179 GVVIFLLVAVVPTFVGMFDDFGG 201
>gi|46190542|ref|ZP_00206508.1| COG2064: Flp pilus assembly protein TadC [Bifidobacterium longum
DJO10A]
Length = 58
Score = 37.6 bits (86), Expect = 2.6, Method: Composition-based stats.
Identities = 16/47 (34%), Positives = 24/47 (51%)
Query: 277 SETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSII 323
+ + E+ AA L KL +P + FLP +LV + PAI S +
Sbjct: 11 EQLDRDERAAIERNAAKLSVKLLMPTGLCFLPAFVLVGVIPAIASFM 57
>gi|206901854|ref|YP_002250592.1| FimO [Dictyoglomus thermophilum H-6-12]
gi|206740957|gb|ACI20015.1| FimO [Dictyoglomus thermophilum H-6-12]
Length = 409
Score = 37.6 bits (86), Expect = 2.6, Method: Composition-based stats.
Identities = 21/169 (12%), Positives = 60/169 (35%), Gaps = 16/169 (9%)
Query: 165 SVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLL 224
S+ ++ ++ + +G+S+ L ++E +S L + +
Sbjct: 54 SLTLAPKKERVGKVKLTDLTVFTRQFATMINAGLSLSTCLNILSE--QSESKALKQILKE 111
Query: 225 TIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERL 284
+ + AF F D ++++ ++ ++L L ++
Sbjct: 112 VQRMVDEGSSLSEAFAKFP-----DVFSPLYINMVKAAESAGTLDETLERLAVTLEKQQE 166
Query: 285 MEAEKKAASLGPKLTVPMIIFFLPV----LILVIIGPAILSIIDTMKDH 329
+ + K+A +T P+I+ + + +L + P + ++M
Sbjct: 167 LRRKIKSA-----MTYPVIVLIIAIGAGFGMLTFLVPIFAGMFESMGAQ 210
>gi|134298887|ref|YP_001112383.1| type II secretion system protein [Desulfotomaculum reducens MI-1]
gi|134051587|gb|ABO49558.1| type II secretion system protein [Desulfotomaculum reducens MI-1]
Length = 401
Score = 37.6 bits (86), Expect = 2.7, Method: Composition-based stats.
Identities = 19/148 (12%), Positives = 46/148 (31%), Gaps = 8/148 (5%)
Query: 180 KRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAF 239
+ SG+ I Q+L + ++ + L + +L + A
Sbjct: 62 VKELALFCRQFATLSSSGVPIVQSL-YLLKE-QTGNKALKGALEAIAEDLQGGKSLGQAL 119
Query: 240 ENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLT 299
+ + ++++ S+ L L + + K A P
Sbjct: 120 SSHHK-----IFSAFFINMVEAGEMSGSLDHVLDRLADYFERAYELREKFKTAITYPAFI 174
Query: 300 VPMIIFFLPVLILVIIGPAILSIIDTMK 327
+ M I + + + ++ P II ++
Sbjct: 175 MSMAICTIGCVFIFVL-PTFAQIIIELQ 201
>gi|308178277|ref|YP_003917683.1| hypothetical protein AARI_24950 [Arthrobacter arilaitensis Re117]
gi|307745740|emb|CBT76712.1| hypothetical membrane protein [Arthrobacter arilaitensis Re117]
Length = 224
Score = 37.6 bits (86), Expect = 2.7, Method: Composition-based stats.
Identities = 33/160 (20%), Positives = 62/160 (38%), Gaps = 14/160 (8%)
Query: 163 APSVWISNLVQKRQ-SSIKRAWPDALDLLLICVESGISIDQALRRV--AEDIGGQSVPLS 219
+W +++ S+ A + L + SG+S A+ + AE+ G+ V
Sbjct: 27 LRRIWTHGATKRKDGHSVLNADARVIRELSALLRSGLSFYPAIDALLDAEEEHGKIVGAL 86
Query: 220 EEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSET 279
+E+ T L+ R A + Q V+ L S R G S+ D L L +
Sbjct: 87 KELQATHR-LNNSAPRGDALDG----NQSPAVQRLHWCLELSARSGASLADVLERLAEDL 141
Query: 280 RS----ERLMEAEKKAASLGPKLT--VPMIIFFLPVLILV 313
+ ++ +A KL +P++ F +L+ +
Sbjct: 142 ENALVAQQAFDAAMAGPKATIKLLTWLPLVGFGFGMLLGI 181
>gi|83589204|ref|YP_429213.1| hypothetical protein Moth_0336 [Moorella thermoacetica ATCC 39073]
gi|83572118|gb|ABC18670.1| hypothetical protein Moth_0336 [Moorella thermoacetica ATCC 39073]
Length = 316
Score = 37.6 bits (86), Expect = 2.7, Method: Composition-based stats.
Identities = 27/196 (13%), Positives = 69/196 (35%), Gaps = 6/196 (3%)
Query: 66 DSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPI 125
+ L R S+ + +++ + ++ + L+ SE + +L + +P+
Sbjct: 32 KAPRLALPRRKSREMPPVIRRFLHQGQGNEDELPPWLKQ---WSERTSLMLKRSGVHIPV 88
Query: 126 IFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPD 185
+ ++G++ + + A +++ AP V + VQ R++ I
Sbjct: 89 MRYLVGLLAGGAGGFITGVTLMKNLPAAVILALSIALAPDVVLIGRVQNRRNKIIEQLAA 148
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
A+ + + +AL A+ + PL + + +L+ +
Sbjct: 149 AVRIFAAEFGDTPQVPRALSITAQKV---PAPLGDILRQADTDLAAGKSIDDVCLYLMKE 205
Query: 246 TQMDCVRNATQALIQS 261
+ R Q L +
Sbjct: 206 LDFEYGRMFVQLLRLA 221
>gi|328859732|gb|EGG08840.1| hypothetical protein MELLADRAFT_42763 [Melampsora larici-populina
98AG31]
Length = 593
Score = 37.6 bits (86), Expect = 2.7, Method: Composition-based stats.
Identities = 11/79 (13%), Positives = 27/79 (34%), Gaps = 4/79 (5%)
Query: 107 FRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPS- 165
+++I + P++ I+G Y + + + V F P
Sbjct: 232 IYRAPAISIFTASAFIGPVLGPIVGSFVAGSYLGFRWIFWLMMIIGGGFTAMVYFGLPET 291
Query: 166 ---VWISNLVQKRQSSIKR 181
+ ++ +KR++ R
Sbjct: 292 YAPILLAKRAKKRRAEENR 310
>gi|145300645|ref|YP_001143486.1| general secretion pathway protein F [Aeromonas salmonicida subsp.
salmonicida A449]
gi|142853417|gb|ABO91738.1| general secretion pathway protein F [Aeromonas salmonicida subsp.
salmonicida A449]
Length = 388
Score = 37.6 bits (86), Expect = 2.7, Method: Composition-based stats.
Identities = 22/146 (15%), Positives = 53/146 (36%), Gaps = 12/146 (8%)
Query: 175 RQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPN 234
R+ + L V +G++I++ALR VAE L + +++ +
Sbjct: 42 RRGASTSELALITRQLATLVGAGLTIEEALRAVAEQCEKAH--LRSLVATVRSKVVEGYS 99
Query: 235 RQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASL 294
+ F + ++++ + + L L T + M L
Sbjct: 100 LADSLGAFPHVFD-----QLFRSMVAAGEKSGHLEKVLNRLADYTEQRQHMRT-----KL 149
Query: 295 GPKLTVPMIIFFLPVLILVIIGPAIL 320
+ P+++ + V ++ I+ A++
Sbjct: 150 LQAMIYPIVLTLVAVGVISILLTAVV 175
>gi|307265042|ref|ZP_07546603.1| Type II secretion system F domain protein [Thermoanaerobacter
wiegelii Rt8.B1]
gi|306920027|gb|EFN50240.1| Type II secretion system F domain protein [Thermoanaerobacter
wiegelii Rt8.B1]
Length = 249
Score = 37.6 bits (86), Expect = 2.8, Method: Composition-based stats.
Identities = 20/154 (12%), Positives = 57/154 (37%), Gaps = 25/154 (16%)
Query: 180 KRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAF 239
+ P AL++ + +E G++ + + + G L E + + + A
Sbjct: 103 EEELPAALEVFISGLEVGMNKENIIGYIVRTRKGVVRDLLYE---AQVRIDTGSSLKDAL 159
Query: 240 ENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRS-----------ERLMEAE 288
+++ D + +A+ T +S++ + R +
Sbjct: 160 TFAADKSLNDHFKRFVKAV-------TGEYESVK----DMRENLEELLEEVEERNYNQKI 208
Query: 289 KKAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
++A +L L P+ + + ++++ P ++S+
Sbjct: 209 ERAGTLDNSLFFPIFLGYFVPILVMFALPFVISL 242
>gi|320180162|gb|EFW55101.1| General secretion pathway protein F [Shigella boydii ATCC 9905]
Length = 398
Score = 37.6 bits (86), Expect = 2.8, Method: Composition-based stats.
Identities = 16/157 (10%), Positives = 53/157 (33%), Gaps = 14/157 (8%)
Query: 172 VQKRQSSIKR-AWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELS 230
V+ R+ I L + + ++++L + + + L++ + + +
Sbjct: 49 VKTRRPRISHSELTLFTRQLATLSAAALPLEESLAVIGQ--QSSNKRLADVLNQVRSAIL 106
Query: 231 FLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKK 290
A ++F + + L+++ + L L + + +
Sbjct: 107 EGHPLSDALQHFPTLFD-----SLYRTLVKAGEKSGLLAPVLEKLADYNENRQKIR---- 157
Query: 291 AASLGPKLTVP-MIIFFLPVLILVIIGPAILSIIDTM 326
+ L L P M+ ++++++ + I +
Sbjct: 158 -SKLIQSLIYPCMLTTVAIGVVIILLTAVVPKITEQF 193
>gi|284176146|ref|YP_003406423.1| hypothetical protein Htur_5119 [Haloterrigena turkmenica DSM 5511]
gi|284017803|gb|ADB63750.1| hypothetical protein Htur_5119 [Haloterrigena turkmenica DSM 5511]
Length = 604
Score = 37.6 bits (86), Expect = 2.8, Method: Composition-based stats.
Identities = 34/210 (16%), Positives = 70/210 (33%), Gaps = 15/210 (7%)
Query: 117 LVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQ 176
L +R + + +G+ I + G + + + P + + + V
Sbjct: 325 LWLRALWG-VLAGIGVYAIVDAVGPAHLAPIVAGGFAVGVALLAVYGPILAVRHYV---- 379
Query: 177 SSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQ 236
++ DAL ++ V G S++ A+ A + G++ + E L
Sbjct: 380 REVEDHLTDALYIVGRQVSDGESVESAVDLAATRVPGETGAVFERAAGLQRRLQIGVESA 439
Query: 237 V-----AFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKA 291
A E+ R L + + G G ++ + +EAE K
Sbjct: 440 FLGPHGALED----VPSPRARGTAALLAIASKEGKPAGRAIVSMADHLEELSEVEAETKR 495
Query: 292 ASLGPKLTV-PMIIFFLPVLILVIIGPAIL 320
T+ +F P++ V +G A +
Sbjct: 496 NLAKVTGTLDATAAYFAPMVAGVTVGMAAM 525
>gi|302539257|ref|ZP_07291599.1| integral membrane protein [Streptomyces sp. C]
gi|302448152|gb|EFL19968.1| integral membrane protein [Streptomyces sp. C]
Length = 305
Score = 37.6 bits (86), Expect = 2.9, Method: Composition-based stats.
Identities = 33/215 (15%), Positives = 71/215 (33%), Gaps = 27/215 (12%)
Query: 99 VNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGY 158
+ AG + R +V + + ++W + +P + ++G+
Sbjct: 45 RIRAAKAGLPEAWQRRW----RALVTTAGITVLVVWAY-----TGWPVHGVLAGAAVLGF 95
Query: 159 VGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPL 218
P V +++ A L+ L +GIS+ Q +R A P+
Sbjct: 96 PFLLNPGVAAEQRIER-----LEAIGQWLNGLAGIHTAGISLVQTIRASA---RNAPAPI 147
Query: 219 SEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSD--RYGTSIGDSLR--- 273
+ + L + + AF F + D V + L QS G + +L
Sbjct: 148 AANVRALDERLRSGMDSKQAFALFADELG-DGVVDHVALLFQSHAANMGPGLSTALEALA 206
Query: 274 ----VLVSETRSERLMEAEKKAASLGPKLTVPMII 304
++ R A+ + +S + + ++
Sbjct: 207 VTIHQQAADARDIESDRAKIRKSSRIVSIVICIVF 241
>gi|289675690|ref|ZP_06496580.1| type II secretion system protein [Pseudomonas syringae pv. syringae
FF5]
Length = 184
Score = 37.6 bits (86), Expect = 2.9, Method: Composition-based stats.
Identities = 22/113 (19%), Positives = 43/113 (38%), Gaps = 4/113 (3%)
Query: 132 IIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLL 191
+ ++ L+ Y VGA+ ++ V V++S + R + + P LD +
Sbjct: 74 ALSLYALLILIGYATAGVVGALSVLLAVPLTL-RVFVSWRYEVRVRRMIQQLPQLLDHTV 132
Query: 192 ICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYN 244
++SG ++ A V I PL + M + + A +F
Sbjct: 133 RSLKSGRTLADA---VLHGIDATDQPLKDGMSRIERNVQLGVSLPDAARDFAE 182
>gi|218289534|ref|ZP_03493762.1| hypothetical protein AaLAA1DRAFT_1348 [Alicyclobacillus
acidocaldarius LAA1]
gi|218240402|gb|EED07584.1| hypothetical protein AaLAA1DRAFT_1348 [Alicyclobacillus
acidocaldarius LAA1]
Length = 281
Score = 37.6 bits (86), Expect = 2.9, Method: Composition-based stats.
Identities = 39/251 (15%), Positives = 96/251 (38%), Gaps = 22/251 (8%)
Query: 64 QKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVV 123
+ +RTR + + K+ ++ L DE +V+ LR +G +R+ +
Sbjct: 20 AGQGEYAGIRTRARIAAGWYGTKMRVRKRLEDEQLVSLLRKSGL--TLKAYQYHYLRIGL 77
Query: 124 PIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPS-VWISNLVQKRQSSIKRA 182
++FL++G++ LL + +++ + + P ++ L ++Q++++R
Sbjct: 78 TLVFLLMGVV------GLLHGRMLPMLFPLVVWFGLEYRCPFPMYYGFLALQKQAALERD 131
Query: 183 WPDALDLLLICVES----G--ISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQ 236
L L+ E+ G + + +RR + L + + + + N
Sbjct: 132 KALYLLYRLLLQEAVAFRGRPLGVYDMIRRQLHRV----PVLRPFLERCLHDW--VDNPA 185
Query: 237 VAFENFYNRTQMDCVRNATQALIQSDRYGTSIG-DSLRVLVSETRSERLMEAEKKAASLG 295
A + F + LI+ + G ++ D L+ + R++R+ +
Sbjct: 186 AALQRFGEEVGTSQAKALAHMLIEIEEAGVAVALDVLQTNLERFRADRIAAFRAHLNTRS 245
Query: 296 PKLTVPMIIFF 306
T ++
Sbjct: 246 ILATALTMLGL 256
>gi|18976702|ref|NP_578059.1| flagellar assembly protein J [Pyrococcus furiosus DSM 3638]
gi|18892282|gb|AAL80454.1| flagella accessory protein [Pyrococcus furiosus DSM 3638]
Length = 568
Score = 37.6 bits (86), Expect = 2.9, Method: Composition-based stats.
Identities = 24/153 (15%), Positives = 55/153 (35%), Gaps = 4/153 (2%)
Query: 121 LVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIK 180
L+ I+ ++ I + ++ P L+V ++ + F + + + ++ +I
Sbjct: 24 LIPGIVGSFATLLAIMIFTRIFTLPTGLKVFMYLIPIILMFYT-TAYPYLIADSKKIAIN 82
Query: 181 RAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAEL-SFLPNRQVAF 239
P + + S I L+ +A+D +++E+ + F + AF
Sbjct: 83 SKIPYFITYFAVLSTSEIGRSDLLKVMAQDPK--LGAIAKELKKVYVLVDKFHRSLPEAF 140
Query: 240 ENFYNRTQMDCVRNATQALIQSDRYGTSIGDSL 272
RT + L S G + + L
Sbjct: 141 RFLARRTPSRVFADFLDRLAYSLDSGVELKEYL 173
>gi|399798|sp|P31743|GSPF_AERHY RecName: Full=General secretion pathway protein F
gi|809648|emb|CAA47127.1| ExeF [Aeromonas hydrophila]
Length = 388
Score = 37.6 bits (86), Expect = 2.9, Method: Composition-based stats.
Identities = 22/146 (15%), Positives = 53/146 (36%), Gaps = 12/146 (8%)
Query: 175 RQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPN 234
R+ + L V +G++I++ALR VAE L + +++ +
Sbjct: 42 RRGASTSELALITRQLATLVGAGLTIEEALRAVAEQCEKAH--LRSLVATVRSKVVEGYS 99
Query: 235 RQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASL 294
+ F + ++++ + + L L T + M L
Sbjct: 100 LADSLGAFPHVFD-----QLFRSMVAAGEKSGHLEKVLNRLADYTEQRQHMRT-----KL 149
Query: 295 GPKLTVPMIIFFLPVLILVIIGPAIL 320
+ P+++ + V ++ I+ A++
Sbjct: 150 LQAMIYPIVLTLVAVGVISILLTAVV 175
>gi|326204894|ref|ZP_08194747.1| hypothetical protein Cpap_0153 [Clostridium papyrosolvens DSM 2782]
gi|325984943|gb|EGD45786.1| hypothetical protein Cpap_0153 [Clostridium papyrosolvens DSM 2782]
Length = 309
Score = 37.6 bits (86), Expect = 3.0, Method: Composition-based stats.
Identities = 25/176 (14%), Positives = 62/176 (35%), Gaps = 15/176 (8%)
Query: 114 NILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQ 173
+ + L+ ++F I I + + + ++ P ++
Sbjct: 76 SRFSAICLISLLLFAAGAGIAIILQN----------IFLIPVLAVGFMFIPFWYVRLTST 125
Query: 174 KRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFL- 232
+ SI AL ++ + + V E IG + P+ + ++ +
Sbjct: 126 NYKKSIAAELETALSIITTAY---LRNEDIFTAVEESIGYLNPPVRSIFESFLTQIRLVN 182
Query: 233 PNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAE 288
P+ A + + + + A+ S +Y S+ +L +V++ R++ AE
Sbjct: 183 PDIDAALKAMSPKIENNVFHEWCDAVS-SCQYDRSLKTTLTPIVTKLSDMRIVNAE 237
>gi|149182919|ref|ZP_01861377.1| comG operon protein 2 [Bacillus sp. SG-1]
gi|148849368|gb|EDL63560.1| comG operon protein 2 [Bacillus sp. SG-1]
Length = 345
Score = 37.6 bits (86), Expect = 3.0, Method: Composition-based stats.
Identities = 33/145 (22%), Positives = 56/145 (38%), Gaps = 15/145 (10%)
Query: 185 DALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEM-LLTIAELSFLPNRQVAFENFY 243
+ + SG+SI+QAL V PL +E+ I +L + + E F
Sbjct: 213 FFSREMSYLLNSGMSINQALTEVGSQ---SYRPLFKELAERMIQDLRIGKSFPESVEYFG 269
Query: 244 NRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMI 303
T LI+ R+G G R L + S+ ME + + + P +
Sbjct: 270 L---------FTDGLIEVIRHGERRGQLPRELFT--YSQFCMETLEVSGKKLLSVIQPAV 318
Query: 304 IFFLPVLILVIIGPAILSIIDTMKD 328
F+ V IL+I ++ + M+
Sbjct: 319 FLFIGVFILLIYFSIMIPLFQVMQS 343
>gi|196233098|ref|ZP_03131946.1| type II secretion system protein [Chthoniobacter flavus Ellin428]
gi|196222905|gb|EDY17427.1| type II secretion system protein [Chthoniobacter flavus Ellin428]
Length = 362
Score = 37.6 bits (86), Expect = 3.0, Method: Composition-based stats.
Identities = 18/131 (13%), Positives = 47/131 (35%), Gaps = 9/131 (6%)
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQ-SVPLSEEMLLTIAELSFLPNRQVAFENFYN 244
+ L + +G+++D++L +A+ + LS + + + + A F
Sbjct: 129 FTEQLAHLLGAGLTLDESLNVLAQRLRQPRLRGLSSTLHRALID---GRSLSQALAEF-P 184
Query: 245 RTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMII 304
R N + ++ L L + + + + + A L P + + I
Sbjct: 185 RIFTPLYVNLVS----AGEASGALPKILMRLSEHLSALQDLRDKVRGALLYPAVLIVAGI 240
Query: 305 FFLPVLILVII 315
+ + V++
Sbjct: 241 GLVVAFMTVMV 251
>gi|228942721|ref|ZP_04105249.1| Hypothetical membrane protein [Bacillus thuringiensis serovar
berliner ATCC 10792]
gi|228975832|ref|ZP_04136362.1| Hypothetical membrane protein [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228982327|ref|ZP_04142603.1| Hypothetical membrane protein [Bacillus thuringiensis Bt407]
gi|228777432|gb|EEM25723.1| Hypothetical membrane protein [Bacillus thuringiensis Bt407]
gi|228783858|gb|EEM31907.1| Hypothetical membrane protein [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228816932|gb|EEM63029.1| Hypothetical membrane protein [Bacillus thuringiensis serovar
berliner ATCC 10792]
gi|326943833|gb|AEA19723.1| Hypothetical membrane protein [Bacillus thuringiensis serovar
chinensis CT-43]
Length = 297
Score = 37.6 bits (86), Expect = 3.1, Method: Composition-based stats.
Identities = 58/313 (18%), Positives = 125/313 (39%), Gaps = 22/313 (7%)
Query: 18 ITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITS-LQKDSASSRLRTRD 76
+ T + +F L+++++ + A ER +K QI + + + RT
Sbjct: 3 LLTTIPLFLLLFSLIYLVV----------DYAFERRNNKKFQIHKYIGRYRKNEENRTFL 52
Query: 77 SKSLRNFVK-KLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWI 135
+K K N ++E + KL A + + L+ +LV+ I + +I+
Sbjct: 53 FMLFEPILKLKKNWIPQRMEEELNIKLDKANL--KITPIEFLLKKLVISIFVFLFALIYA 110
Query: 136 FGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVE 195
+ + + + + ++I + F +V ++++++ R+ ++ P+ + L +
Sbjct: 111 WIFPQYK----LIILTVGLIISALVFFYENVRLNSIIKSRELRLELELPELMIPLGFML- 165
Query: 196 SGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNAT 255
S S +A +R E P +EE+ +A+L P + F +
Sbjct: 166 SKFSAFEATKRSIEYASDSIKPYAEEL---VAKLELEPGSHEPYIEFAKALNIPSAYQFM 222
Query: 256 QALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVII 315
AL QS + + E + E+ K + P L IIF ++++I+
Sbjct: 223 VALEQSMKMDEEKSKEIINAQIEVMQKLQSESHDKLVKMRPGLVSKYIIFAYLGMVILIM 282
Query: 316 GPAILSIIDTMKD 328
G + +SI D +
Sbjct: 283 GISFVSIFDKFVN 295
>gi|227487255|ref|ZP_03917571.1| type II secretion system protein [Corynebacterium glucuronolyticum
ATCC 51867]
gi|227541578|ref|ZP_03971627.1| type II secretion system protein [Corynebacterium glucuronolyticum
ATCC 51866]
gi|227092913|gb|EEI28225.1| type II secretion system protein [Corynebacterium glucuronolyticum
ATCC 51867]
gi|227182546|gb|EEI63518.1| type II secretion system protein [Corynebacterium glucuronolyticum
ATCC 51866]
Length = 185
Score = 37.6 bits (86), Expect = 3.1, Method: Composition-based stats.
Identities = 30/136 (22%), Positives = 55/136 (40%), Gaps = 9/136 (6%)
Query: 187 LDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRT 246
++L C+E+G+S QA V GG S L+ T + L+ + A+
Sbjct: 54 VELFSACLEAGLSHAQAAHAVGM-CGGDSAWLT-----TASLLAVGLDPDTAWAPVRALP 107
Query: 247 QMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFF 306
+ + A + R G SI + + + EA G + +P+ + F
Sbjct: 108 GCADIASLASA---ATRTGASIVAGCMRVADKLATRAADEATAATERAGVLIALPLTMCF 164
Query: 307 LPVLILVIIGPAILSI 322
LP L+ + P ++S+
Sbjct: 165 LPAFFLLGLVPVLVSL 180
>gi|152967076|ref|YP_001362860.1| type II secretion system protein [Kineococcus radiotolerans
SRS30216]
gi|151361593|gb|ABS04596.1| type II secretion system protein [Kineococcus radiotolerans
SRS30216]
Length = 322
Score = 37.6 bits (86), Expect = 3.1, Method: Composition-based stats.
Identities = 29/191 (15%), Positives = 65/191 (34%), Gaps = 5/191 (2%)
Query: 134 WIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLIC 193
W+ + P + V +++G GF P + + Q+R+ +R DL+ +
Sbjct: 133 WLVLRAWGVPLPGGVPVSLALVLGGAGFLVPDLALRGDAQRRRRDFRRVVGVFSDLVAMN 192
Query: 194 VESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRN 253
+ G + +AL ++ L A + + +
Sbjct: 193 LAGGRGLPEAL--LSSASVSDYWALVRIRQALAGARLSGRTPWQALGELGEELAVAELSD 250
Query: 254 ATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVP-MIIFFLPVLIL 312
AL + G I SL + R + + E A + V +++ ++
Sbjct: 251 LAGALALAADDGAKIRASLAARAATVRRRDMADVEGDAGEKSQSMLVAQLVLCT--AFMV 308
Query: 313 VIIGPAILSII 323
+ PA+ +++
Sbjct: 309 FLAFPAVHNLM 319
>gi|9507535|ref|NP_052542.1| integral membrane protein [Plasmid ColIb-P9]
gi|32470256|ref|NP_863480.1| integral membrane protein [Salmonella enterica subsp. enterica
serovar Typhimurium]
gi|83404879|ref|YP_424894.1| integral membrane protein [Escherichia coli]
gi|168758370|ref|ZP_02783377.1| integral membrane protein [Escherichia coli O157:H7 str. EC4401]
gi|168770669|ref|ZP_02795676.1| integral membrane protein [Escherichia coli O157:H7 str. EC4486]
gi|194447049|ref|YP_002039157.1| integral membrane protein [Salmonella enterica subsp. enterica
serovar Kentucky str. CVM29188]
gi|194447184|ref|YP_002043948.1| integral membrane protein [Salmonella enterica subsp. enterica
serovar Heidelberg str. SL476]
gi|195940167|ref|ZP_03085549.1| integral membrane protein [Escherichia coli O157:H7 str. EC4024]
gi|299836180|ref|YP_003717749.1| putative transmembrane protein [Escherichia coli ETEC 1392/75]
gi|300819638|ref|ZP_07099830.1| type II secretion system F domain protein [Escherichia coli MS
107-1]
gi|300907592|ref|ZP_07125227.1| type II secretion system F domain protein [Escherichia coli MS
84-1]
gi|301306614|ref|ZP_07212675.1| type II secretion system F domain protein [Escherichia coli MS
124-1]
gi|4512532|dbj|BAA75181.1| integral membrane protein [Plasmid ColIb-P9]
gi|4903093|dbj|BAA77978.1| integral membrane protein [Plasmid R64]
gi|20521624|dbj|BAB91688.1| PilR integral membrane protein [Salmonella enterica subsp. enterica
serovar Typhimurium]
gi|46949074|gb|AAT07428.1| PilR [Escherichia coli]
gi|70610250|gb|AAZ05397.1| integral membrane protein [Salmonella enterica]
gi|83308605|emb|CAI79598.1| integral membrane protein [Escherichia coli]
gi|85813731|emb|CAJ65892.1| integral membrane protein [Salmonella enterica subsp. enterica
serovar Typhimurium]
gi|189354763|gb|EDU73182.1| integral membrane protein [Escherichia coli O157:H7 str. EC4401]
gi|189360487|gb|EDU78906.1| integral membrane protein [Escherichia coli O157:H7 str. EC4486]
gi|194358493|gb|ACF56937.1| integral membrane protein [Salmonella enterica subsp. enterica
serovar Kentucky str. CVM29188]
gi|194405488|gb|ACF65709.1| integral membrane protein [Salmonella enterica subsp. enterica
serovar Heidelberg str. SL476]
gi|297374529|emb|CBL93612.1| putative transmembrane protein [Escherichia coli ETEC 1392/75]
gi|300400660|gb|EFJ84198.1| type II secretion system F domain protein [Escherichia coli MS
84-1]
gi|300527805|gb|EFK48867.1| type II secretion system F domain protein [Escherichia coli MS
107-1]
gi|300838175|gb|EFK65935.1| type II secretion system F domain protein [Escherichia coli MS
124-1]
gi|315252983|gb|EFU32951.1| type II secretion system F domain protein [Escherichia coli MS
85-1]
gi|315295829|gb|EFU55146.1| type II secretion system F domain protein [Escherichia coli MS
16-3]
gi|321271463|gb|ADW79553.1| IncI1 conjugal transfer protein PilR [Escherichia coli]
gi|321271657|gb|ADW79745.1| IncI1 conjugal transfer pilus biogenesis protein PilR [Salmonella
enterica subsp. enterica serovar Kentucky]
gi|323133135|gb|ADX20563.1| integral membrane protein [Salmonella enterica subsp. enterica
serovar Typhimurium str. 4/74]
gi|323959234|gb|EGB54898.1| type II secretion system protein F [Escherichia coli H489]
gi|330907918|gb|EGH36441.1| incI1 plasmid conjugative transfer inner membrane protein PilR
[Escherichia coli AA86]
Length = 365
Score = 37.6 bits (86), Expect = 3.1, Method: Composition-based stats.
Identities = 21/192 (10%), Positives = 65/192 (33%), Gaps = 16/192 (8%)
Query: 131 GIIWIFGYDKLLE-YPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIK-------RA 182
+ +++G ++ Y V ++ G + + P+ + V+ I
Sbjct: 169 ALGFLYGLSVFVDNYGAICAVLFAVITGLISWSLPNWKSPDSVRTFADKIMPWSIYQDIQ 228
Query: 183 WPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENF 242
L + +++ ++ +L + ++ S LS + I + + +A
Sbjct: 229 GATFLLNMAALLKAKMTTLNSLNIL-QEFA--SPWLSTRLDSIIYRVRQGDHLGLALRQC 285
Query: 243 YNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPM 302
+ N L G + + S+ L +K+A + + + +
Sbjct: 286 GYQFPSREAANFLSLLQ-----GDGATELISNYGQRWLSQTLQRVKKRANVIRLIMLIFL 340
Query: 303 IIFFLPVLILVI 314
++ + ++ ++
Sbjct: 341 VMSLMLLVFAIM 352
>gi|14521685|ref|NP_127161.1| flagellar assembly protein J [Pyrococcus abyssi GE5]
gi|5458904|emb|CAB50391.1| flaJ flagella-related protein J [Pyrococcus abyssi GE5]
Length = 572
Score = 37.6 bits (86), Expect = 3.1, Method: Composition-based stats.
Identities = 25/155 (16%), Positives = 53/155 (34%), Gaps = 5/155 (3%)
Query: 120 RLVVP-IIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSS 178
R+++P ++ + I + + +++ P L ++ + + + ++ S
Sbjct: 25 RILLPGLLGSFVLFIVVSVFTRMIPLPRGLVFFMYLIPIIIAIYV-AAYPYLAADSKRIS 83
Query: 179 IKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFL-PNRQV 237
I P + + S I L+ +A D ++ EM + L +
Sbjct: 84 INSKLPYFITYFAVLSTSEIGRTDILKVLASDPK--LGAIAGEMKKVYMIVDKLHRSLPE 141
Query: 238 AFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSL 272
AF RT + L S G + D L
Sbjct: 142 AFRFLAKRTPSRVFADFLDRLAYSLDSGVELKDYL 176
>gi|256367614|ref|YP_003108173.1| integral membrane protein [Escherichia coli]
gi|228480869|gb|ACQ42195.1| integral membrane protein [Escherichia coli]
Length = 365
Score = 37.2 bits (85), Expect = 3.1, Method: Composition-based stats.
Identities = 21/192 (10%), Positives = 65/192 (33%), Gaps = 16/192 (8%)
Query: 131 GIIWIFGYDKLLE-YPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIK-------RA 182
+ +++G ++ Y V ++ G + + P+ + V+ I
Sbjct: 169 ALGFLYGLSVFVDNYGAICAVLFAVITGLISWSLPNWKSPDSVRTFADKIMPWSIYQDIQ 228
Query: 183 WPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENF 242
L + +++ ++ +L + ++ S LS + I + + +A
Sbjct: 229 GATFLLNMAALLKAKMTTLNSLNIL-QEFA--SPWLSTRLDSIIYRVRQGDHLGLALRQC 285
Query: 243 YNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPM 302
+ N L G + + S+ L +K+A + + + +
Sbjct: 286 GYQFPSREAANFLSLLQ-----GDGATELISNYGQRWLSQTLQRVKKRANVIRLIMLIFL 340
Query: 303 IIFFLPVLILVI 314
++ + ++ ++
Sbjct: 341 VMSLMLLVFAIM 352
>gi|229591511|ref|YP_002873630.1| putative general secretion pathway protein F [Pseudomonas
fluorescens SBW25]
gi|229363377|emb|CAY50524.1| putative general secretion pathway protein F [Pseudomonas
fluorescens SBW25]
Length = 400
Score = 37.2 bits (85), Expect = 3.1, Method: Composition-based stats.
Identities = 24/158 (15%), Positives = 53/158 (33%), Gaps = 8/158 (5%)
Query: 170 NLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAEL 229
R A L + +G ++++L + + G + ++
Sbjct: 51 RKAFGRGQLNGAALVSFTQQLATLLGAGQPLERSLGILLKQPG--QPQTRALIERIREQV 108
Query: 230 SFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEK 289
A E + D +++++ G ++ D+LR L +L+ E
Sbjct: 109 KAGQPLSKALEE-----EGDQFSPLYLSMVRAGEAGGALEDTLRQLSDYLERSQLLRGEV 163
Query: 290 KAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
A + P V ++ L L+L + P + I +
Sbjct: 164 INALIYPAFLVVGVLGSL-ALLLAYVVPQFVPIFKDLG 200
>gi|296129670|ref|YP_003636920.1| Type II secretion system F domain protein [Cellulomonas flavigena
DSM 20109]
gi|296021485|gb|ADG74721.1| Type II secretion system F domain protein [Cellulomonas flavigena
DSM 20109]
Length = 409
Score = 37.2 bits (85), Expect = 3.2, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 52/135 (38%), Gaps = 15/135 (11%)
Query: 190 LLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMD 249
L ++SG+S+ +AL + E +S PL++ + ++ A
Sbjct: 79 LATMIDSGLSLLRALAILVE--QTESKPLAKILSQVRNDVEVGTAFSTALGKHPETFP-- 134
Query: 250 CVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVP-------- 301
++++ G + +L + +E + A+ K+A P + +
Sbjct: 135 ---PLMVNMVRAGEVGGFLDQTLVSIADNFETEVRLRAKIKSAMAYPVIVLVIAVLAVVG 191
Query: 302 MIIFFLPVLILVIIG 316
M++F +PV + G
Sbjct: 192 MLLFIVPVFAEMFAG 206
>gi|284008394|emb|CBA74813.1| protein transport protein [Arsenophonus nasoniae]
Length = 338
Score = 37.2 bits (85), Expect = 3.2, Method: Composition-based stats.
Identities = 27/189 (14%), Positives = 61/189 (32%), Gaps = 24/189 (12%)
Query: 147 QLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIK-----------RAWPDALDLLLICVE 195
L + ++ + G+ + NL+++ Q I + L I +
Sbjct: 157 ALYIVVTLVCIFWGYFIHRKYSPNLIKREQKFILHLPLLNKLICWQQLYYFFQTLHITQK 216
Query: 196 SGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNAT 255
SG+++ + V + + + + ++ + + +
Sbjct: 217 SGLTLLEGFEYVLKTLK--HPVYHDAIHSIYQKIQRGISFSESIKR------EKLFPYLC 268
Query: 256 QALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVII 315
I + ++ L L + + L KK KL PM+I L V+I ++
Sbjct: 269 LQFITAGELSGNLTLFLEKLANWYQENLLNYVNKKI-----KLIEPMLILILAVVITGLL 323
Query: 316 GPAILSIID 324
L I +
Sbjct: 324 FTMYLPIFN 332
>gi|260222245|emb|CBA31615.1| General secretion pathway protein F [Curvibacter putative symbiont
of Hydra magnipapillata]
Length = 422
Score = 37.2 bits (85), Expect = 3.2, Method: Composition-based stats.
Identities = 17/126 (13%), Positives = 50/126 (39%), Gaps = 7/126 (5%)
Query: 190 LLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMD 249
L V +G+ +++AL +AE+ ++ + + +E++ A
Sbjct: 92 LAGLVSAGLPLERALSSLAEE--AETPAQRDVVATIRSEVNGGKPLGTALAQHPK----- 144
Query: 250 CVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPV 309
+ A++ + +G L L + ++ + ++ A+L P + + + +
Sbjct: 145 EFSDIYVAVVSAGEQSGQLGLVLERLADDLEEQQNLSSKLMGAALYPAIVSVVALVIVLF 204
Query: 310 LILVII 315
L+ ++
Sbjct: 205 LLAYVV 210
>gi|237733725|ref|ZP_04564206.1| type II secretion system protein [Mollicutes bacterium D7]
gi|229383323|gb|EEO33414.1| type II secretion system protein [Coprobacillus sp. D7]
Length = 397
Score = 37.2 bits (85), Expect = 3.2, Method: Composition-based stats.
Identities = 22/155 (14%), Positives = 60/155 (38%), Gaps = 22/155 (14%)
Query: 180 KRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAF 239
+ + + + SG+ + + + +A + L +L A
Sbjct: 57 LKELANFCREIGTMMNSGLPLIRTVSILAS--REDNKKLKAIYNDIYVKLQQGQTLSDAL 114
Query: 240 ENFYNRTQMDCVRNATQALIQSDRYG---TSIGDSLRVLVSETRSERLMEAEKKAASLGP 296
+ + + LIQ R G ++ D++ VL ++ ++ ++ +
Sbjct: 115 K--------EQGKAFPDILIQMVRSGEASGNMQDTMMVLNNQFTNDNKIK-----NKVKS 161
Query: 297 KLTVPMIIFFLPVLILVIIG----PAILSIIDTMK 327
+T P+I+ + +++L+I+ P+ S+ + M+
Sbjct: 162 AMTYPVILGIVTIVVLLIVYTAVLPSFFSMFEGME 196
>gi|270293263|ref|ZP_06199474.1| PTS system, sucrose-specific, EIIBCA component [Streptococcus sp.
M143]
gi|270279242|gb|EFA25088.1| PTS system, sucrose-specific, EIIBCA component [Streptococcus sp.
M143]
Length = 628
Score = 37.2 bits (85), Expect = 3.2, Method: Composition-based stats.
Identities = 15/75 (20%), Positives = 34/75 (45%)
Query: 118 VVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQS 177
V +V+ ++ + + + E + G + ++G G P+ I + K +
Sbjct: 175 AVGIVLGMMLVSGSLPNAWAVASGGEVTAMIFFGFIPVVGLQGSVLPAFIIGVVGAKFEK 234
Query: 178 SIKRAWPDALDLLLI 192
++++ PD LDLL+
Sbjct: 235 ALRKVVPDVLDLLVT 249
>gi|160941847|ref|ZP_02089174.1| hypothetical protein CLOBOL_06743 [Clostridium bolteae ATCC
BAA-613]
gi|158435344|gb|EDP13111.1| hypothetical protein CLOBOL_06743 [Clostridium bolteae ATCC
BAA-613]
Length = 309
Score = 37.2 bits (85), Expect = 3.3, Method: Composition-based stats.
Identities = 27/167 (16%), Positives = 58/167 (34%), Gaps = 10/167 (5%)
Query: 125 IIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWP 184
I + + +F +L +L P +I + + ++
Sbjct: 78 ISLICAAALGLFMAGGILAVMLGNVFLIPVLATGF-LFLPFWYIRLMEHHYKKAVASELE 136
Query: 185 DALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFL-PNRQVAFENFY 243
AL ++ + + L V E+I + P S + L + P+ + A +
Sbjct: 137 TALSIITTAY---LRSEDILTAVNENIHYLNPPASSAFQDFLVRLKVINPDMEAALKELR 193
Query: 244 NRTQMDCVRNATQAL--IQSDRYGTSIGDSLRVLVSETRSERLMEAE 288
+ + D A+ Q DR S+ +L +V++ R++ E
Sbjct: 194 KKIRNDVFEEWVDAIGDCQYDR---SLKSTLTPIVNKLSDMRVVNGE 237
>gi|325275749|ref|ZP_08141628.1| type II secretion system protein [Pseudomonas sp. TJI-51]
gi|324099117|gb|EGB97084.1| type II secretion system protein [Pseudomonas sp. TJI-51]
Length = 101
Score = 37.2 bits (85), Expect = 3.3, Method: Composition-based stats.
Identities = 15/70 (21%), Positives = 33/70 (47%)
Query: 154 ILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGG 213
+ + P ++ +RQ I + +L I E+G++++QALR ++++
Sbjct: 32 LCALGAAYLLPKRLLALAAARRQQRIAAEVGLMIPMLRILFETGLAVEQALRLLSQEGRT 91
Query: 214 QSVPLSEEML 223
+SEE+
Sbjct: 92 LIPNISEELR 101
>gi|66476351|gb|AAY51449.1| pilin biogenesis protein [Microcystis aeruginosa PCC 7806]
gi|159026048|emb|CAO86289.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
Length = 404
Score = 37.2 bits (85), Expect = 3.3, Method: Composition-based stats.
Identities = 17/146 (11%), Positives = 50/146 (34%), Gaps = 16/146 (10%)
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
+ + +G+ I + L + + + + + + ++ A
Sbjct: 69 FSRQFSVMINAGVPIMRCLGVLGD--QSSNPKMRKALQAISTDVQQGSPLSQAMAK---- 122
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
+C ++I++ G + + L L ++ + K+A +T P+ +
Sbjct: 123 -HTECFDELYVSMIEAGETGGVLDEVLLRLSKLLEDMARLKNQIKSA-----MTYPVAVG 176
Query: 306 FLPVLIL----VIIGPAILSIIDTMK 327
L +++ + + P I +K
Sbjct: 177 ILAIIVFFGMTIFLIPVFAKIFTDLK 202
>gi|186680664|ref|YP_001863860.1| type II secretion system protein [Nostoc punctiforme PCC 73102]
gi|186463116|gb|ACC78917.1| type II secretion system protein [Nostoc punctiforme PCC 73102]
Length = 407
Score = 37.2 bits (85), Expect = 3.3, Method: Composition-based stats.
Identities = 23/170 (13%), Positives = 58/170 (34%), Gaps = 16/170 (9%)
Query: 164 PSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEML 223
P + + + + + +G++I ++L ++E + L + ++
Sbjct: 50 PDIALKKFQNSLVKVSVKDKAVFSRQFAVLMNAGVAIVRSLGVLSEQC--SNTKLKQALI 107
Query: 224 LTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSER 283
++ N + R DC ++IQ+ G + + L L
Sbjct: 108 EISNDVQSGMNLSESM-----RKHPDCFDGLYVSMIQAGEVGGVLDEVLNRLAKLLEDVA 162
Query: 284 LMEAEKKAASLGPKLTVPMII-FFLPVLIL---VIIGPAILSIIDTMKDH 329
++ + K+A L+ P ++ F + L + + P I +
Sbjct: 163 RLQNQIKSA-----LSYPTVVGFIAVSIFLGMTIFLIPVFAKIFTEIGTE 207
>gi|323473669|gb|ADX84275.1| type II secretion system protein [Sulfolobus islandicus REY15A]
gi|323476320|gb|ADX81558.1| type II secretion system protein [Sulfolobus islandicus HVE10/4]
Length = 616
Score = 37.2 bits (85), Expect = 3.4, Method: Composition-based stats.
Identities = 39/241 (16%), Positives = 85/241 (35%), Gaps = 20/241 (8%)
Query: 96 ENIVNKLRAAGFRSE---YSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGA 152
+++ K++ AG + ++ + L + L + I L++ F L + G
Sbjct: 36 KSVNMKIKKAGISQDPRLFASRLFLALILSIAISALLIAFSIRFFELYRLTLLTKYLAGF 95
Query: 153 VILIGYVGFCAPSVWISNLVQ------KRQSSIKRAWPDALDLLLICVESGISIDQALRR 206
+ LI + P V++ ++Q R+ + P + + + SG+S
Sbjct: 96 LTLIIFGVIIPPVVYLMQILQLSQSTENRRIGLDSEAPAFAAVFNVFLRSGLSARYVFDY 155
Query: 207 VAEDIGGQSVPLSEEMLLTIAELSF-LPNRQVAFENFYNRTQMDCVRNATQALIQSDRYG 265
+++ + S+ + + + A N + + + R G
Sbjct: 156 LSKSTAMRYA--SQIASYVNKRVKYLGEGVESAIVESLNYSPSKVFNEFLITYVTAVRTG 213
Query: 266 TSIGDSLRVLVSETRSERLMEAEKKAASLG-------PKLTVPMIIFFLPVLILVIIGPA 318
+ D++ + A A +L L+ I FFL VL+L I P+
Sbjct: 214 APVLDTMEAKTKDILKNIETLASTAAENLSGIAEGFVIWLSSGFITFFL-VLLLQAIFPS 272
Query: 319 I 319
+
Sbjct: 273 L 273
>gi|284031222|ref|YP_003381153.1| type II secretion system protein [Kribbella flavida DSM 17836]
gi|283810515|gb|ADB32354.1| type II secretion system protein [Kribbella flavida DSM 17836]
Length = 301
Score = 37.2 bits (85), Expect = 3.4, Method: Composition-based stats.
Identities = 23/146 (15%), Positives = 49/146 (33%), Gaps = 8/146 (5%)
Query: 173 QKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFL 232
++R A + L + + ++QA+ A + + + L + L
Sbjct: 94 ERRAIERLDALATWTEALRDTIAGAVGLEQAIPATA---VNAAPAIKPGLNLLVDRLRIR 150
Query: 233 PNRQVAFENFYNRTQMDCVRNATQALIQSDRY-GTSIGDSLRVLVSETRS----ERLMEA 287
A F + AL+ + R G + + L L R R + A
Sbjct: 151 EPLPSALMRFADDLDDPSADLIVAALVLNARLRGPGLREVLSALADSAREELDVRRKVAA 210
Query: 288 EKKAASLGPKLTVPMIIFFLPVLILV 313
E+++ ++ V + + L+L
Sbjct: 211 ERRSTRRSVQVVVAITLLVAAALVLF 236
>gi|160878996|ref|YP_001557964.1| hypothetical protein Cphy_0838 [Clostridium phytofermentans ISDg]
gi|160427662|gb|ABX41225.1| hypothetical protein Cphy_0838 [Clostridium phytofermentans ISDg]
Length = 511
Score = 37.2 bits (85), Expect = 3.4, Method: Composition-based stats.
Identities = 30/223 (13%), Positives = 74/223 (33%), Gaps = 17/223 (7%)
Query: 96 ENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVIL 155
E + L G ++ L R++ + L +W + L+ + V+L
Sbjct: 278 EKLRISLIQVG--ETMDMSEFLCKRIIYGFLGFSLSFLWTLFF--LMYLWKIKIIFLVLL 333
Query: 156 IGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAE-DIGGQ 214
+ F P + V+ + ++ +L++ + + R++ ++
Sbjct: 334 STLLCFFLPVWVLKYRVRLAKVYMEDEVFQFQAILMMVMY--------MDRISTFELLEI 385
Query: 215 SVPLSEEMLLTIAE--LSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSL 272
S + + L + ++ A T + LI D G + +L
Sbjct: 386 MEDFSIIFKKQLRQCLLDYDVGQKEALLQLKENTYCEAFHRLIDNLIMCDDIG--VTKAL 443
Query: 273 RVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVII 315
+ E + ++ L K + + FLP++ + +
Sbjct: 444 DEVALEIQFYSEKRQQQTNYQLEQKGILCRFLSFLPLVTTIAL 486
>gi|311899776|dbj|BAJ32184.1| hypothetical protein KSE_64250 [Kitasatospora setae KM-6054]
Length = 323
Score = 37.2 bits (85), Expect = 3.4, Method: Composition-based stats.
Identities = 21/160 (13%), Positives = 49/160 (30%), Gaps = 4/160 (2%)
Query: 133 IWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLI 192
+ + + F +L+ F P ++ + R+ A + L
Sbjct: 64 LVLALIGAPGGWLFTRIPLVALLVPAAVFGLPWLFDATRSDTRRIERLEALAEWTQRLAD 123
Query: 193 CVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRT-QMDCV 251
+ G+ ++QA+ L E+ A L + A F ++
Sbjct: 124 VLLLGVGLNQAIM---TSRRTAPAALETEITDLAARLQSRWRPEDALRAFGDQVADSTAD 180
Query: 252 RNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKA 291
+ ++++ G + +L + R E +A
Sbjct: 181 KVLAALVLRAGDSGPGLARALADMAESVREEVRQRRAIEA 220
>gi|187736073|ref|YP_001878185.1| type II secretion system protein [Akkermansia muciniphila ATCC
BAA-835]
gi|187426125|gb|ACD05404.1| type II secretion system protein [Akkermansia muciniphila ATCC
BAA-835]
Length = 422
Score = 37.2 bits (85), Expect = 3.4, Method: Composition-based stats.
Identities = 21/138 (15%), Positives = 45/138 (32%), Gaps = 19/138 (13%)
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
L +++G+ + Q+L +A+ + L + + A
Sbjct: 82 FTRQLATLIDAGLPLLQSLNVLAK--QEANPNLRVTIEALGDSVQGGSTFSEALAQHPRI 139
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
R + + G + L RL E ++KA L K+ M+
Sbjct: 140 FD----RLFVNMVK-AGELGGVLEVVL---------NRLAEYQEKAQKLKSKVISAMV-- 183
Query: 306 FLPVLILVIIGPAILSII 323
P ++L I ++ ++
Sbjct: 184 -YPSIVLFIAVGIVIFLM 200
>gi|87309116|ref|ZP_01091253.1| type IV fimbrial assembly protein PilC [Blastopirellula marina DSM
3645]
gi|87288107|gb|EAQ80004.1| type IV fimbrial assembly protein PilC [Blastopirellula marina DSM
3645]
Length = 466
Score = 37.2 bits (85), Expect = 3.4, Method: Composition-based stats.
Identities = 21/148 (14%), Positives = 53/148 (35%), Gaps = 8/148 (5%)
Query: 180 KRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAF 239
R L I +G+ I ++L+ + + + L ++ ++ A
Sbjct: 70 SRQLTTFTRQLAILQNAGLPILRSLKIL--EKQSKPGRLKNSLMDVCEDIESGAGLSEAM 127
Query: 240 ENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLT 299
C +I++ G ++ L L + ++ + K A + P +
Sbjct: 128 SKCPK-----CFNRLYVNMIKAGEAGGALEVILLRLADFMERDEDLKRKVKGAMIYPAVV 182
Query: 300 VPMIIFFLPVLILVIIGPAILSIIDTMK 327
+ + + L +++ I+ P +I D +
Sbjct: 183 ITVAVGILTFIMIKIV-PVFKTIFDDFE 209
>gi|91776494|ref|YP_546250.1| type II secretion system protein [Methylobacillus flagellatus KT]
gi|91710481|gb|ABE50409.1| type II secretion system protein [Methylobacillus flagellatus KT]
Length = 402
Score = 37.2 bits (85), Expect = 3.4, Method: Composition-based stats.
Identities = 23/150 (15%), Positives = 57/150 (38%), Gaps = 24/150 (16%)
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
L +++G+ + QA V + G + +S+ + A++ + AF +
Sbjct: 68 FTRQLATMMKAGVPLLQAFDIVGK--GHSNPAVSKLLGDIKADVETGSSLSQAFRKYPLY 125
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPK-------- 297
+ ++ G I DSL +RL ++K ++ K
Sbjct: 126 FD----NLFCNLVGAGEQAG--ILDSL--------LDRLATYKEKILAIKGKIKSALFYP 171
Query: 298 LTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
+++ ++ F + +I++ + PA + +
Sbjct: 172 ISIIVVAFVITAVIMIFVIPAFKELFSSFG 201
>gi|269798144|ref|YP_003312044.1| type II secretion system protein [Veillonella parvula DSM 2008]
gi|269094773|gb|ACZ24764.1| type II secretion system protein [Veillonella parvula DSM 2008]
Length = 391
Score = 37.2 bits (85), Expect = 3.5, Method: Composition-based stats.
Identities = 28/140 (20%), Positives = 56/140 (40%), Gaps = 18/140 (12%)
Query: 190 LLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAE-LSFLPNRQVAFENFYNRTQM 248
L + +ESG+ + +AL+ + + G + + E + A
Sbjct: 65 LGLLIESGVPLRRALQLLCQGKRGL-------LYTALYESIERGQTLSQALR-------S 110
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSET-RSERLMEAEKKAASLGPKLTVPMIIFFL 307
+ AL++S ++G+SL+ + +L + A S L + M IFFL
Sbjct: 111 EGCPPIALALLESGEAAGTLGESLQYISRHYDWERQLKQKVISAISYPLFLLLMMNIFFL 170
Query: 308 PVLILVIIGPAILSIIDTMK 327
++ +I P+ ++ TM
Sbjct: 171 VTILFII--PSFENVFTTMH 188
>gi|254518711|ref|ZP_05130767.1| type II secretion system protein [Clostridium sp. 7_2_43FAA]
gi|226912460|gb|EEH97661.1| type II secretion system protein [Clostridium sp. 7_2_43FAA]
Length = 350
Score = 37.2 bits (85), Expect = 3.5, Method: Composition-based stats.
Identities = 39/242 (16%), Positives = 88/242 (36%), Gaps = 33/242 (13%)
Query: 107 FRSEYSLNILLVVRLVVPIIFLILGII---WIFGYDKLLEYPFQLR-------------V 150
++ + ILL + ++ IF+ I + F + +E P + +
Sbjct: 115 IKNVLAYPILLFISIITVFIFIAFVTIPSLYEFYINLNIEIPSVCKFLYDLVNYIKTNPI 174
Query: 151 GAVILIGYVGFCAP----SVWISNLVQK--RQSSIKRAWPDALDLLLICV--ESGISIDQ 202
+ I G P ++ N ++ + +I R + + + + L+ + SG+++
Sbjct: 175 YSFIYFLSWGILLPYIIYKFYLKNYIKALLNKIAIIREFNEFIFISLLSIIIRSGVNLSN 234
Query: 203 ALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSD 262
L A L E LL + + + + T ++I+
Sbjct: 235 GLVYSATSFKNS--ALKERFLLLNSSILRGETISESLKKHGYYCN------YTTSIIKLG 286
Query: 263 RYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
G S+ + ++ L + L + + A L P + M + L++ I+ P S+
Sbjct: 287 EEGGSMDERMKTLSDHLEKKLLSDINRYMAILQPASILIMGACVIAFLMIFIV-PLFSSL 345
Query: 323 ID 324
+D
Sbjct: 346 LD 347
>gi|283835166|ref|ZP_06354907.1| protein transport protein HofC [Citrobacter youngae ATCC 29220]
gi|291069467|gb|EFE07576.1| protein transport protein HofC [Citrobacter youngae ATCC 29220]
Length = 400
Score = 37.2 bits (85), Expect = 3.5, Method: Composition-based stats.
Identities = 31/140 (22%), Positives = 51/140 (36%), Gaps = 10/140 (7%)
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
+L + +GI Q L V E + S S+ + ++S VA +N
Sbjct: 269 VLALTQNAGIPFLQGLESVMETLA--SPFWSQRLAQVHHDISAGKPVWVALKNCG----- 321
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP 308
L+++ S+ LR L + L +AE AA L P L V +
Sbjct: 322 -EFSPLCIQLVRTGEASGSLDAMLRNLAHHHGEKTLSQAENLAALLEPALLVITGLII-- 378
Query: 309 VLILVIIGPAILSIIDTMKD 328
++V + I + D M
Sbjct: 379 GTLVVAMYLPIFHLGDAMSG 398
>gi|229588337|ref|YP_002870456.1| type IV fimbrial assembly protein [Pseudomonas fluorescens SBW25]
gi|229360203|emb|CAY47060.1| type IV fimbrial assembly protein [Pseudomonas fluorescens SBW25]
Length = 383
Score = 37.2 bits (85), Expect = 3.5, Method: Composition-based stats.
Identities = 18/72 (25%), Positives = 28/72 (38%), Gaps = 2/72 (2%)
Query: 229 LSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSE--RLME 286
L AF+ + VR Q L Q+ GTS+ ++LR L+
Sbjct: 57 LKAGIPLLQAFDIIGEGFESRPVRELVQGLKQAIAAGTSLAEALRKQPRYFDELYCNLVA 116
Query: 287 AEKKAASLGPKL 298
A ++A +L L
Sbjct: 117 AGEQAGALETLL 128
>gi|296109771|ref|YP_003616720.1| Type II secretion system F domain protein [Methanocaldococcus
infernus ME]
gi|295434585|gb|ADG13756.1| Type II secretion system F domain protein [Methanocaldococcus
infernus ME]
Length = 557
Score = 37.2 bits (85), Expect = 3.6, Method: Composition-based stats.
Identities = 36/242 (14%), Positives = 79/242 (32%), Gaps = 31/242 (12%)
Query: 102 LRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGF 161
+ AG + ++V +V I+ +I+ I + G L + +LI V
Sbjct: 5 IIRAGLNPKEYFIKIVVPSFIVSILLIIIAIKFFSGV------ILYLFIVLALLILGVAL 58
Query: 162 CAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEE 221
P + + NL K I + + ++ L+ ++E+ + L+EE
Sbjct: 59 AYPYILLDNLKNK----INERLHIFITKFGTLSITDLNRKDLLKILSEE-KEELGQLAEE 113
Query: 222 ---MLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVS- 277
+ + + + S + A RT + L + G + + L
Sbjct: 114 SRKLYVLVDKWS--RSLAEACRFLAQRTPSPEFADFLDRLAFALDSGEDLKEFLIKEQDI 171
Query: 278 --------ETRSERLMEA-EKKAASLGPKLTVPMII-----FFLPVLILVIIGPAILSII 323
R R ++ ++ S ++ + F +P + + + I
Sbjct: 172 VMDDYEAFYNRVLRSLDLYKELYVSAMTSISFLLAFAILVPFLMPFSFIFMAVAGVFLFI 231
Query: 324 DT 325
T
Sbjct: 232 VT 233
>gi|167755497|ref|ZP_02427624.1| hypothetical protein CLORAM_01011 [Clostridium ramosum DSM 1402]
gi|167704436|gb|EDS19015.1| hypothetical protein CLORAM_01011 [Clostridium ramosum DSM 1402]
Length = 397
Score = 37.2 bits (85), Expect = 3.6, Method: Composition-based stats.
Identities = 22/155 (14%), Positives = 60/155 (38%), Gaps = 22/155 (14%)
Query: 180 KRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAF 239
+ + + + SG+ + + + +A + L +L A
Sbjct: 57 LKELANFCREIGTMMNSGLPLIRTVSILAS--REDNKKLKAIYNDIYVKLQQGQTLSDAL 114
Query: 240 ENFYNRTQMDCVRNATQALIQSDRYG---TSIGDSLRVLVSETRSERLMEAEKKAASLGP 296
+ + + LIQ R G ++ D++ VL ++ ++ ++ +
Sbjct: 115 K--------EQGKAFPDILIQMVRSGEASGNMQDTMMVLNNQFTNDNKIK-----NKVKS 161
Query: 297 KLTVPMIIFFLPVLILVIIG----PAILSIIDTMK 327
+T P+I+ + +++L+I+ P+ S+ + M+
Sbjct: 162 AMTYPVILGIVTIVVLLIVYTAVLPSFFSMFEGME 196
>gi|257875283|ref|ZP_05654936.1| conserved hypothetical protein [Enterococcus casseliflavus EC20]
gi|257809449|gb|EEV38269.1| conserved hypothetical protein [Enterococcus casseliflavus EC20]
Length = 403
Score = 37.2 bits (85), Expect = 3.6, Method: Composition-based stats.
Identities = 24/167 (14%), Positives = 59/167 (35%), Gaps = 16/167 (9%)
Query: 164 PSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEML 223
P + +Q + L + SGI+I A R + + ++ + +
Sbjct: 46 PETLANKEIQLFTKVSLKLLVGYLRQFSTLIASGITIVDASRML--EEQQKNPNFKKILG 103
Query: 224 LTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSER 283
E+ A+++ N ++I S+ +L+ +
Sbjct: 104 EVRDEIDSGRPLSEAYKDHPNAFP-----TLLTSVIAVSEMSGSLEGNLKDMADYYEKS- 157
Query: 284 LMEAEKKAASLGPKLTVPMII----FFLPVLILVIIGPAILSIIDTM 326
AE ++ + + P+I+ F + +++LV+I P + + +
Sbjct: 158 ---AENRSGIVTA-MVYPIILVILTFIVGIILLVMIVPMFVEVFEGF 200
>gi|291452930|ref|ZP_06592320.1| predicted protein [Streptomyces albus J1074]
gi|291355879|gb|EFE82781.1| predicted protein [Streptomyces albus J1074]
Length = 248
Score = 37.2 bits (85), Expect = 3.7, Method: Composition-based stats.
Identities = 27/151 (17%), Positives = 64/151 (42%), Gaps = 6/151 (3%)
Query: 176 QSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNR 235
+ ++ P A DL+ CV +G +A R V +GG + + + A++ +
Sbjct: 99 RPAVDARLPLAADLVAACVAAGAGPVEAARAVGASVGG---AVGQGLARAAADVRLGGDP 155
Query: 236 QVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLG 295
+ A+ + + + L ++ G + L + +E R++ A ++A
Sbjct: 156 EAAWRHVAE---VPGASALARCLQRAAASGAPAAEPLARIAAEARADGNRAATERARRAA 212
Query: 296 PKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
+T P+ + FLP + + + P ++ + +
Sbjct: 213 VAVTAPVGLCFLPAFLTLGVAPVVIGLASGL 243
>gi|289524034|ref|ZP_06440888.1| pilin biogenesis protein [Anaerobaculum hydrogeniformans ATCC
BAA-1850]
gi|289502690|gb|EFD23854.1| pilin biogenesis protein [Anaerobaculum hydrogeniformans ATCC
BAA-1850]
Length = 406
Score = 37.2 bits (85), Expect = 3.7, Method: Composition-based stats.
Identities = 27/130 (20%), Positives = 46/130 (35%), Gaps = 10/130 (7%)
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
L +++GI++ AL +AE + I E+ + +R ++
Sbjct: 70 FFRQLATMLDAGITLGMALDMLAEQTENK------RFAEAIREVKTMVDRGISLS--AAM 121
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
A+ ++ G + SL L + ER E KK S V M
Sbjct: 122 ATKREFSKLMVAIARAGEEGGVLESSLDRLATFL--ERQDELRKKIISASTYPAVVMGFA 179
Query: 306 FLPVLILVII 315
+ V ILV +
Sbjct: 180 LMVVFILVTV 189
>gi|150399788|ref|YP_001323555.1| hypothetical protein Mevan_1041 [Methanococcus vannielii SB]
gi|150399793|ref|YP_001323560.1| hypothetical protein Mevan_1047 [Methanococcus vannielii SB]
gi|150399798|ref|YP_001323565.1| hypothetical protein Mevan_1053 [Methanococcus vannielii SB]
gi|150012491|gb|ABR54943.1| conserved hypothetical protein [Methanococcus vannielii SB]
gi|150012496|gb|ABR54948.1| conserved hypothetical protein [Methanococcus vannielii SB]
gi|150012501|gb|ABR54953.1| conserved hypothetical protein [Methanococcus vannielii SB]
Length = 198
Score = 37.2 bits (85), Expect = 3.7, Method: Composition-based stats.
Identities = 27/162 (16%), Positives = 69/162 (42%), Gaps = 14/162 (8%)
Query: 114 NILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQ 173
I + + VV ++ ++L II F + + +G+V+ I + + +
Sbjct: 32 RIFIGLIFVVLVLPILLRIIIGFTLQTTIILTL-VYLGSVLAIPSIMY-----------E 79
Query: 174 KRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLP 233
+ P AL ++++ ++SG SI +A+ V + + +++L + E
Sbjct: 80 SKMEKFDSNLPKALYVMVLSLDSGRSIVEAINEVIRSGIPEVDSVFSKIVLLMTEKKL-- 137
Query: 234 NRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVL 275
+ + + N R ++ +I++ +YG + ++L +
Sbjct: 138 SFEDSMMLVSNSLDSKLFRQISRLIIENRKYGGELANTLNMY 179
>gi|171913110|ref|ZP_02928580.1| type II secretion system protein [Verrucomicrobium spinosum DSM
4136]
Length = 411
Score = 37.2 bits (85), Expect = 3.8, Method: Composition-based stats.
Identities = 24/145 (16%), Positives = 48/145 (33%), Gaps = 8/145 (5%)
Query: 180 KRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAF 239
+ + L ++ G+ ++QALR + E +S L + +L A
Sbjct: 68 RAQLILFTEELADLMDGGLQLEQALRVMHE--RQESPVLRKVSGRIREQLREGATFSKAL 125
Query: 240 ENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLT 299
L + S+ LR L + +++ AA + P
Sbjct: 126 LQ-----ASPSFDEMYCNLATAGEVSGSLPQILRRLSASITQMHDLQSRVVAALVYPAFM 180
Query: 300 VPMIIFFLPVLILVIIGPAILSIID 324
+I L V V++ P + ++
Sbjct: 181 FGALIMLLIVFSTVLL-PGFVDMLS 204
>gi|288921590|ref|ZP_06415862.1| hypothetical protein FrEUN1fDRAFT_5560 [Frankia sp. EUN1f]
gi|288347008|gb|EFC81313.1| hypothetical protein FrEUN1fDRAFT_5560 [Frankia sp. EUN1f]
Length = 294
Score = 37.2 bits (85), Expect = 3.9, Method: Composition-based stats.
Identities = 30/211 (14%), Positives = 63/211 (29%), Gaps = 28/211 (13%)
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVW-ISNLVQKRQSSIKRAWPDA 186
+G++ +G VIL G P + + + V I+
Sbjct: 59 AAVGLLIATATRLPALGLIVAVLGYVILENRAGMSVPQLTRLGDAVATWAEQIREGL--- 115
Query: 187 LDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRT 246
++G + A+ A L++ + A L A
Sbjct: 116 --------DAGQHLRAAI---AASTDHPPAELADPLQRLAARLRSAMPLPDALWALRAEV 164
Query: 247 QMDCVRNATQALIQSDRYG--------TSIGDSLRVLVSETRSERLMEAEKKAASLGPKL 298
+ AL + R G S + R + R + + A + A +
Sbjct: 165 PHPTLGPVIIALDVAYRRGAGDLPRLMASQTAATREATALLRDQHALRARHRRA-----M 219
Query: 299 TVPMIIFFLPVLILVIIGPAILSIIDTMKDH 329
T+ + +F + +L++ P L+ ++
Sbjct: 220 TLLLALFTGAITVLLVAWPNFLAPYRNLQGQ 250
>gi|254385616|ref|ZP_05000940.1| sensor kinase [Streptomyces sp. Mg1]
gi|194344485|gb|EDX25451.1| sensor kinase [Streptomyces sp. Mg1]
Length = 451
Score = 37.2 bits (85), Expect = 3.9, Method: Composition-based stats.
Identities = 40/196 (20%), Positives = 75/196 (38%), Gaps = 17/196 (8%)
Query: 102 LRAAGFRSEYSLNILLVVRLVVP--IIFLILGIIW---IFGYDKLLEYPFQLRVGAVILI 156
L AG + +++ +L++ L VP I+ ++L +W + P L V + L+
Sbjct: 121 LDLAGSFALFAVVPMLMMSLSVPPAIVLVVLANLWPVTVVWLRGGEFDPHILSVLPISLL 180
Query: 157 GYVGFCAPSVWISNLVQK---RQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGG 213
G +WI+ +V++ R I + ++GIS ++ R+A +I
Sbjct: 181 GIALSVLLGLWITRVVRQSNDRGELINELRRSREREARLSHQAGISAER--ERLAREIHD 238
Query: 214 QSVP-LSEEMLLTIA---ELSFLPNRQVAFENFYNRTQ---MDCVRNATQALIQSDRYGT 266
L+ + L A E+ P R + R + R AL +
Sbjct: 239 TLAQSLTSIISLVQAAESEVEGNPERARSRLGLAGRVAQDSLAEARGFVSALTPPPLRES 298
Query: 267 SIGDSLRVLVSETRSE 282
S+ ++R R E
Sbjct: 299 SVVQAVRRQADLLREE 314
>gi|220933966|ref|YP_002512865.1| type IV pilin biogenesis protein PilC [Thioalkalivibrio sp.
HL-EbGR7]
gi|219995276|gb|ACL71878.1| type IV pilin biogenesis protein PilC [Thioalkalivibrio sp.
HL-EbGR7]
Length = 403
Score = 37.2 bits (85), Expect = 4.0, Method: Composition-based stats.
Identities = 20/154 (12%), Positives = 54/154 (35%), Gaps = 10/154 (6%)
Query: 175 RQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPN 234
++ + + L + +E+G+ + QA V G ++ + E +L +++
Sbjct: 58 KKKIVPKDIAVFLRQMATMMEAGVPLVQAFDIVGR--GHENPSMQELILAMKSDVEGGTT 115
Query: 235 RQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAE-KKAAS 293
A + L+ + ++ L + + ++A+ KKA
Sbjct: 116 FSAALGKHPKYFD-----DLVVNLVNAGEQAGALETLLDKIATYKEKTESLKAKIKKALF 170
Query: 294 LGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
+ V + F + ++L+ + P +
Sbjct: 171 YPTAVLV--VAFIVTAILLIFVVPQFQDLFQGFG 202
>gi|229492886|ref|ZP_04386682.1| conserved hypothetical protein [Rhodococcus erythropolis SK121]
gi|229320160|gb|EEN85985.1| conserved hypothetical protein [Rhodococcus erythropolis SK121]
Length = 294
Score = 37.2 bits (85), Expect = 4.0, Method: Composition-based stats.
Identities = 34/195 (17%), Positives = 62/195 (31%), Gaps = 18/195 (9%)
Query: 126 IFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPD 185
+ L +GI L + F L + +L+G P +S + Q S + +
Sbjct: 54 LLLAVGIGAGATVYYLSGWLFTLFLVPALLVG-----LP-YLLSRPEAEHQISRLSSMDE 107
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVP-LSEEMLLTIAELSFLPNRQVAFENFYN 244
L + +G I+ + I L +E+ I L A F +
Sbjct: 108 WTRNLSSSMRAGSGIEHTI------ISTPIPETLKDEITAFINRLRNNVPPAEAVTRFAS 161
Query: 245 RTQMDCVRNATQALIQSDRY-GTSIGDSLRVLVSE----TRSERLMEAEKKAASLGPKLT 299
AL+ + + G + + L L + R +EA++K+ K
Sbjct: 162 DLNDSVGDKICGALLLAMQLRGVGLANVLEGLAEDVGDTVARRRRIEADRKSTRTQAKWV 221
Query: 300 VPMIIFFLPVLILVI 314
+ I L
Sbjct: 222 TIITIAVLAAAFAFT 236
>gi|83338397|gb|ABC11882.1| PilC [Aliivibrio fischeri]
Length = 412
Score = 37.2 bits (85), Expect = 4.0, Method: Composition-based stats.
Identities = 20/148 (13%), Positives = 50/148 (33%), Gaps = 12/148 (8%)
Query: 168 ISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIA 227
IS+ + + + ++ L + SG+ + Q+L+ +AE+ + +
Sbjct: 59 ISSFEKMKHAVKRKDITLFTRQLSTMLASGVPVVQSLQLIAEN--NTKAEMKSILHQVCL 116
Query: 228 ELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEA 287
+ A T + LI + S+ + L E R +
Sbjct: 117 SIEAGTQLSKAL-----STSCSHFDSFYIDLIATGEETGSLAQAFARLA-EYREK-SDAL 169
Query: 288 EKKAASLGPKLTVPMIIFFLPVLILVII 315
K + P ++F + + + +++
Sbjct: 170 RSKVIKA---MIYPTMVFLVAITVTILM 194
>gi|46398267|gb|AAS91821.1| AopB [Aeromonas hydrophila]
Length = 390
Score = 37.2 bits (85), Expect = 4.0, Method: Composition-based stats.
Identities = 36/169 (21%), Positives = 68/169 (40%), Gaps = 9/169 (5%)
Query: 66 DSASSRLRTRDSKSLRNFVKKL---NLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLV 122
+ + ++L+ D K R+ +K N + I E + + AG + + + +V
Sbjct: 115 EKSQNKLKLEDIKRARDLNEKKIGENQEKIKEAEESAKEAKKAGIFGKIFGWLSAIASVV 174
Query: 123 VPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRA 182
+ I + G+ + G + + AV G IS V ++
Sbjct: 175 IGAIMVATGVGAVAGALMIAAGVVGMVSMAVQHAADAGL------ISKEVMEKLGPALMG 228
Query: 183 WPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSF 231
AL L + G SI + +VA IGG++V ++ +M +AEL+
Sbjct: 229 IEIALAALSLVASFGSSIGTLISKVATKIGGKAVDMAAKMTAKVAELAA 277
>gi|326943573|gb|AEA19466.1| membrane protein, putative [Bacillus thuringiensis serovar
chinensis CT-43]
Length = 310
Score = 37.2 bits (85), Expect = 4.1, Method: Composition-based stats.
Identities = 22/194 (11%), Positives = 63/194 (32%), Gaps = 16/194 (8%)
Query: 125 IIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWP 184
+ + + ++ F + + ++ GF P + ++ +
Sbjct: 84 LSGMSIAAVFYFSFGRDP---------FTLISVLCGFLVPRFLLYRRKKRYYLVVIDRLS 134
Query: 185 DALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYN 244
+ + ++ + A R + + + EE+ L AF F
Sbjct: 135 IYMKAVANALQIS---NNAKRVLVQVKPMMHESIQEEIEKVSLLLEGGTTMHRAFRGFNE 191
Query: 245 RTQMDCVRNATQALIQ-SDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVP-- 301
+ + L S GT+ L + + ++L A +++ +
Sbjct: 192 TFNFRELVFFHEMLEVCSREGGTNSVQVLLDIAEDFEKQKLYLARLRSSLSQAQRAFVQN 251
Query: 302 -MIIFFLPVLILVI 314
+I+ +P++I+++
Sbjct: 252 CLIVIAMPIVIMLM 265
>gi|291452023|ref|ZP_06591413.1| integral membrane protein [Streptomyces albus J1074]
gi|291354972|gb|EFE81874.1| integral membrane protein [Streptomyces albus J1074]
Length = 289
Score = 37.2 bits (85), Expect = 4.1, Method: Composition-based stats.
Identities = 15/101 (14%), Positives = 30/101 (29%), Gaps = 1/101 (0%)
Query: 216 VPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRY-GTSIGDSLRV 274
L + + L A ++ + AL+ + R G + L
Sbjct: 107 PVLRPHLDALVDRLRSRTPLPEALQHLADEIDDASADIIVAALMLNARLRGPGLRQVLGA 166
Query: 275 LVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVII 315
L R E M A + +V +++ +L +
Sbjct: 167 LAKSAREEVDMRQRVMAQRSSTRRSVQIVVAVSVAFVLGLA 207
>gi|282850373|ref|ZP_06259752.1| type II secretion system F domain protein [Veillonella parvula ATCC
17745]
gi|282579866|gb|EFB85270.1| type II secretion system F domain protein [Veillonella parvula ATCC
17745]
Length = 335
Score = 36.8 bits (84), Expect = 4.1, Method: Composition-based stats.
Identities = 28/140 (20%), Positives = 56/140 (40%), Gaps = 18/140 (12%)
Query: 190 LLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAE-LSFLPNRQVAFENFYNRTQM 248
L + +ESG+ + +AL+ + + G + + E + A
Sbjct: 9 LGLLIESGVPLRRALQLLCQGKRGL-------LYTALYESIERGQTLSQALR-------S 54
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSET-RSERLMEAEKKAASLGPKLTVPMIIFFL 307
+ AL++S ++G+SL+ + +L + A S L + M IFFL
Sbjct: 55 EGCSPIALALLESGEAAGTLGESLQYISRHYDWERQLKQKVISAISYPLFLLLMMNIFFL 114
Query: 308 PVLILVIIGPAILSIIDTMK 327
++ +I P+ ++ TM
Sbjct: 115 VTILFII--PSFENVFTTMH 132
>gi|229113406|ref|ZP_04242857.1| hypothetical protein bcere0018_55790 [Bacillus cereus Rock1-15]
gi|229164943|ref|ZP_04292758.1| hypothetical protein bcere0009_56160 [Bacillus cereus R309803]
gi|228618527|gb|EEK75538.1| hypothetical protein bcere0009_56160 [Bacillus cereus R309803]
gi|228670020|gb|EEL25412.1| hypothetical protein bcere0018_55790 [Bacillus cereus Rock1-15]
Length = 307
Score = 36.8 bits (84), Expect = 4.1, Method: Composition-based stats.
Identities = 22/194 (11%), Positives = 64/194 (32%), Gaps = 16/194 (8%)
Query: 125 IIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWP 184
+ + + I+ F + + ++ GF P + ++ +
Sbjct: 81 LSGMSIAAIFYFSFGRDP---------FTLISALCGFLVPKFLLYRRKKRYYLVVIDRLS 131
Query: 185 DALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYN 244
+ + ++ + A R + + + EE+ L AF+ F
Sbjct: 132 IYMKAVANALQIS---NNAKRVLVQVKPMMHESIQEEIEKVSLLLEGGTTMHRAFKGFNE 188
Query: 245 RTQMDCVRNATQALIQ-SDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVP-- 301
+ + L S G++ L + + ++L A +++ +
Sbjct: 189 TFNFRELVFFHEMLEVCSREGGSNSVQVLLDIAEDFEKQKLYLARLRSSLSQAQRAFVQN 248
Query: 302 -MIIFFLPVLILVI 314
+I+ +P++I+++
Sbjct: 249 CLIVIAMPIVIMLM 262
>gi|126437754|ref|YP_001073445.1| type II secretion system protein [Mycobacterium sp. JLS]
gi|126237554|gb|ABO00955.1| type II secretion system protein [Mycobacterium sp. JLS]
Length = 192
Score = 36.8 bits (84), Expect = 4.1, Method: Composition-based stats.
Identities = 25/135 (18%), Positives = 52/135 (38%), Gaps = 4/135 (2%)
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQ 247
D+L C+ SG+ + L+ + L+ + A+ +
Sbjct: 52 DVLTACLTSGM---AVSSAASAAAASAPTGLAAILARAADMLALGADAATAWSDPGTPLD 108
Query: 248 MDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFL 307
D R + +S GT++ + L +E+RS+ A A G + P+ + +L
Sbjct: 109 -DHARALMRLARRSAESGTALAQGVADLAAESRSDAADAARATAERAGVLIAAPLGVCYL 167
Query: 308 PVLILVIIGPAILSI 322
P + + I P ++ +
Sbjct: 168 PAFLCLGIVPVVVGL 182
>gi|307824595|ref|ZP_07654819.1| Type II secretion system F domain protein [Methylobacter
tundripaludum SV96]
gi|307734249|gb|EFO05102.1| Type II secretion system F domain protein [Methylobacter
tundripaludum SV96]
Length = 408
Score = 36.8 bits (84), Expect = 4.2, Method: Composition-based stats.
Identities = 21/134 (15%), Positives = 47/134 (35%), Gaps = 12/134 (8%)
Query: 183 WPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENF 242
+ +SG+ I L VA+ + + + ++ R +
Sbjct: 271 LARFARSFALSSKSGVPIMSTLNLVAQTVDNDF------IAQKVEQMRAGVERGESILRT 324
Query: 243 YNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPM 302
T + ++Q G +L L+ E + E + +LG K+ M
Sbjct: 325 ATNTGV-----FNPLVLQMIAVGEE-SGALDDLMEEIADMYQRDVEYEIKTLGAKIEPIM 378
Query: 303 IIFFLPVLILVIIG 316
I+F +++++ +G
Sbjct: 379 IVFLGILVLILALG 392
>gi|292623484|ref|XP_002665319.1| PREDICTED: hypothetical protein LOC100334672 [Danio rerio]
Length = 361
Score = 36.8 bits (84), Expect = 4.2, Method: Composition-based stats.
Identities = 15/68 (22%), Positives = 30/68 (44%)
Query: 38 SGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDEN 97
++++RM+S+ RE+L++ Q S Q+ R + R +KKL ++
Sbjct: 82 RAQIQQRMRSLTERRELLQRAQEESRQRAERFQRFVEENELKRRRAMKKLQMEKQQSQSK 141
Query: 98 IVNKLRAA 105
+ A
Sbjct: 142 EEERGELA 149
>gi|239980169|ref|ZP_04702693.1| integral membrane protein [Streptomyces albus J1074]
Length = 338
Score = 36.8 bits (84), Expect = 4.2, Method: Composition-based stats.
Identities = 15/101 (14%), Positives = 30/101 (29%), Gaps = 1/101 (0%)
Query: 216 VPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRY-GTSIGDSLRV 274
L + + L A ++ + AL+ + R G + L
Sbjct: 156 PVLRPHLDALVDRLRSRTPLPEALQHLADEIDDASADIIVAALMLNARLRGPGLRQVLGA 215
Query: 275 LVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVII 315
L R E M A + +V +++ +L +
Sbjct: 216 LAKSAREEVDMRQRVMAQRSSTRRSVQIVVAVSVAFVLGLA 256
>gi|152991304|ref|YP_001357026.1| general secretory pathway protein F [Nitratiruptor sp. SB155-2]
gi|151423165|dbj|BAF70669.1| general secretory pathway protein F [Nitratiruptor sp. SB155-2]
Length = 412
Score = 36.8 bits (84), Expect = 4.2, Method: Composition-based stats.
Identities = 23/130 (17%), Positives = 48/130 (36%), Gaps = 8/130 (6%)
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
LD L I +++G+ ++ +L ++ + L + ++ + + E F +
Sbjct: 77 LLDQLAIMLDAGLPLNFSLEETVKN--EKDPMLKAIFTQILEDIESGMSLYASVERFKRQ 134
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAE-KKAASLGPKLTVPMII 304
+ + GT + + + L + + +KA + V M I
Sbjct: 135 LGTLSLSLF----RLGEETGT-LAEQIAHLSQIYQEILDNRRKFRKATRYPIFIIVAMSI 189
Query: 305 FFLPVLILVI 314
F V ILVI
Sbjct: 190 AFAIVTILVI 199
>gi|331005864|ref|ZP_08329216.1| General secretion pathway protein F [gamma proteobacterium
IMCC1989]
gi|330420308|gb|EGG94622.1| General secretion pathway protein F [gamma proteobacterium
IMCC1989]
Length = 420
Score = 36.8 bits (84), Expect = 4.2, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 48/136 (35%), Gaps = 12/136 (8%)
Query: 180 KRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAF 239
+ L V+SG+ + ++L+ VA+ + +L + + + A
Sbjct: 81 VKDLSLFTRQLASLVQSGMPLSESLQAVAKQSRKD--AIKNVVLQVRSRVLEGLSLAQAL 138
Query: 240 ENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLT 299
+ Y R R A QS G + + L + + R L +
Sbjct: 139 SD-YPRIFDSMYRAMVNAGEQSGFLG-PVLERLSDYAETSHAARQQ--------LKSAMV 188
Query: 300 VPMIIFFLPVLILVII 315
P+I+ + + I++ +
Sbjct: 189 YPIILVLVCISIVIAL 204
>gi|297161945|gb|ADI11657.1| putative integral membrane protein [Streptomyces bingchenggensis
BCW-1]
Length = 304
Score = 36.8 bits (84), Expect = 4.3, Method: Composition-based stats.
Identities = 17/135 (12%), Positives = 42/135 (31%), Gaps = 4/135 (2%)
Query: 164 PSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEML 223
P + S+ R++ A ++L + + ++QA+ A+ L E+
Sbjct: 94 PGLLGSDSAAARRTERMEALALWTEMLRDTLSAAAGLEQAVLTTAD---IAPSALRRELG 150
Query: 224 LTIAELSFLPNRQVAFENFYNRTQMD-CVRNATQALIQSDRYGTSIGDSLRVLVSETRSE 282
+ + + +F + ++ + R + + L L R +
Sbjct: 151 DLAVSVRSGQSLPASLRSFADEVDDPLADVVVAALVMAAQRQASQLAALLGELADSVREQ 210
Query: 283 RLMEAEKKAASLGPK 297
M A +
Sbjct: 211 VAMRQRIDAGRASIR 225
>gi|90414687|ref|ZP_01222658.1| putative general secretion pathway protein F [Photobacterium
profundum 3TCK]
gi|90324229|gb|EAS40804.1| putative general secretion pathway protein F [Photobacterium
profundum 3TCK]
Length = 410
Score = 36.8 bits (84), Expect = 4.3, Method: Composition-based stats.
Identities = 18/153 (11%), Positives = 50/153 (32%), Gaps = 13/153 (8%)
Query: 175 RQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPN 234
R+ L V++G+ +++ L+ V E + L +L + +
Sbjct: 64 RRGISTNELSLVTRQLATLVQAGMPLEECLKAVGE--QNEKPRLRNMLLAVRSRVVEGYT 121
Query: 235 RQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASL 294
+ + +A++ + + L L T + + M + L
Sbjct: 122 LSDSMAEYP-----HIFDQLFRAMVAAGEKSGHLDTVLNRLADYTENRQKMR-----SKL 171
Query: 295 GPKLTVPMIIFFL-PVLILVIIGPAILSIIDTM 326
+ P ++ + ++ ++ + I+D
Sbjct: 172 QQAMIYPTMLTLVAVAVVAFLLATVVPKIVDQF 204
>gi|303241413|ref|ZP_07327916.1| conserved hypothetical protein [Acetivibrio cellulolyticus CD2]
gi|302591022|gb|EFL60767.1| conserved hypothetical protein [Acetivibrio cellulolyticus CD2]
Length = 309
Score = 36.8 bits (84), Expect = 4.3, Method: Composition-based stats.
Identities = 32/197 (16%), Positives = 73/197 (37%), Gaps = 14/197 (7%)
Query: 126 IFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPD 185
++ I +I + + + + P ++ + + +
Sbjct: 78 FGMVFAISFILMVAGIFASILMENIFMIPVAAIGLSLIPFWYLIFISHSFKKQVNAELET 137
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFL-PNRQVAFENFYN 244
AL ++ SI A++ E+IG + P+S + + + + N + A + +
Sbjct: 138 ALSIITSSYFRNESIITAVQ---ENIGYINPPISNAFKAFLTQANMINVNVKQALNDMKS 194
Query: 245 RTQMDCVRNATQALI--QSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPM 302
+ A+I Q D+ ++ +L ++S+ R++ AE L + P+
Sbjct: 195 KLNHHVFSEWVDAMIACQEDK---TLKTTLTPIISKLSDVRIVSAE-----LDYLMYEPL 246
Query: 303 IIFFLPVLILVIIGPAI 319
F L+LV+ P I
Sbjct: 247 KEFITMALLLVLNIPLI 263
>gi|307595026|ref|YP_003901343.1| type II secretion system F domain-containing protein [Vulcanisaeta
distributa DSM 14429]
gi|307550227|gb|ADN50292.1| Type II secretion system F domain protein [Vulcanisaeta distributa
DSM 14429]
Length = 507
Score = 36.8 bits (84), Expect = 4.4, Method: Composition-based stats.
Identities = 36/167 (21%), Positives = 61/167 (36%), Gaps = 35/167 (20%)
Query: 113 LNILLVVRLVVPIIFLIL--GIIWIFGYDKLLEYPFQLRVGAVILI-----------GYV 159
L ++ + L++P I L + I +I D + +G ILI G +
Sbjct: 221 LYLMPAIALLLPAIILRVYQSIPYIIRIDLTHDKTTYAILGVSILIIAISLMYLGIKGVI 280
Query: 160 GFCAPSVWISNLVQKRQSSIK---RAWPDALDLLLICVESGISIDQALRRV--------- 207
P + S LV +R + ++ A PD + + V++G+SI A RV
Sbjct: 281 SLMLPPLLFSVLVTRRVNDVRSSLMALPDLIRDVSEVVKAGLSIGAAFERVLDNPYPRPL 340
Query: 208 ---------AEDIGGQSVPLSEEMLL-TIAELSFLPNRQVAFENFYN 244
D G + P + + ELS L + A +
Sbjct: 341 ITYLQRINQLNDNVGINGPWIMRFAIGILRELSNLGSPSRALDRLVE 387
>gi|311280235|ref|YP_003942466.1| general secretion pathway protein F [Enterobacter cloacae SCF1]
gi|308749430|gb|ADO49182.1| general secretion pathway protein F [Enterobacter cloacae SCF1]
Length = 400
Score = 36.8 bits (84), Expect = 4.4, Method: Composition-based stats.
Identities = 24/149 (16%), Positives = 50/149 (33%), Gaps = 10/149 (6%)
Query: 182 AWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFEN 241
+ L V + + ++ AL+ ++ + LS + ++ AF
Sbjct: 62 SLTLFTRQLSTLVNAALPLESALKAISR--QSEDKKLSALVSDIRDKVVEGHTLNEAFGQ 119
Query: 242 FYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAE-KKAASLGPKLTV 300
F L+ + ++G L L + M+++ +A LTV
Sbjct: 120 FPR-----IFDKLYCTLVMAGEKSGALGQVLEKLADYNEQRQKMKSQLSQAMVYPITLTV 174
Query: 301 PMIIFFLPVLILVIIGPAILSIIDTMKDH 329
I ++LV + P ++ MK
Sbjct: 175 VAIAVI--GILLVAVVPQVIDQFTHMKQQ 201
>gi|116751083|ref|YP_847770.1| type II secretion system protein [Syntrophobacter fumaroxidans
MPOB]
gi|116700147|gb|ABK19335.1| type II secretion system protein [Syntrophobacter fumaroxidans
MPOB]
Length = 395
Score = 36.8 bits (84), Expect = 4.4, Method: Composition-based stats.
Identities = 27/168 (16%), Positives = 57/168 (33%), Gaps = 19/168 (11%)
Query: 168 ISNLVQKRQSSIKRA--WPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLT 225
I + RQ + D L + +G+ +D+AL ++ + +
Sbjct: 42 IKPVKSHRQRRVPEEHLIRFFFD-LSDLLSAGLPVDRALGLISSN--QTNKVFQRISKGL 98
Query: 226 IAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLM 285
+ E+ + A + + N + ++++ ++G LR L R
Sbjct: 99 LEEVQGGSDLSGALAKYRHVFG-----NLSDHMVRAGEASGTLGPILRRLAEYLEQRRTF 153
Query: 286 EAEKKAASLGPKLTVPMIIF----FLPVLILVIIGPAILSIIDTMKDH 329
SL + P I+F V++LV + P I + +
Sbjct: 154 R-----QSLVSSMIYPAILFATSLISMVVLLVYVIPNFAKIFNDLHQK 196
>gi|284050859|ref|ZP_06381069.1| type II secretion system protein [Arthrospira platensis str.
Paraca]
gi|291567073|dbj|BAI89345.1| pilin biogenesis protein [Arthrospira platensis NIES-39]
Length = 377
Score = 36.8 bits (84), Expect = 4.5, Method: Composition-based stats.
Identities = 17/136 (12%), Positives = 44/136 (32%), Gaps = 11/136 (8%)
Query: 180 KRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAF 239
+ +GIS+ + L + E + L + A++ ++
Sbjct: 34 VKDLAIFARQFAAMFNAGISMARCLSVLGEQCE--NAKLKRAINTLRADVEEGEELSLSM 91
Query: 240 ENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLT 299
F + + ++ + G + ++L L ++E K+A+ PK
Sbjct: 92 RKFPDVFD----QLFVS-MVWAGETGGVLDETLERLAVMMEKNHKTQSEIKSATSYPK-- 144
Query: 300 VPMIIFFLPVLILVII 315
++F + +
Sbjct: 145 --TVLFIAIAVFFGMA 158
>gi|170108945|ref|XP_001885680.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164639260|gb|EDR03532.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 634
Score = 36.8 bits (84), Expect = 4.5, Method: Composition-based stats.
Identities = 13/65 (20%), Positives = 27/65 (41%), Gaps = 4/65 (6%)
Query: 252 RNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLI 311
R + + ++ G ++ +L L R + + + A + K+ M F LP +
Sbjct: 435 RMFSLTMR--EKPGGTVTGALFSLARSLRESKRNDMREMA--VAVKVAGVMGEFCLPTKM 490
Query: 312 LVIIG 316
+ I G
Sbjct: 491 VWIAG 495
>gi|271962852|ref|YP_003337048.1| hypothetical protein Sros_1307 [Streptosporangium roseum DSM 43021]
gi|270506027|gb|ACZ84305.1| hypothetical protein Sros_1307 [Streptosporangium roseum DSM 43021]
Length = 295
Score = 36.8 bits (84), Expect = 4.5, Method: Composition-based stats.
Identities = 30/177 (16%), Positives = 58/177 (32%), Gaps = 9/177 (5%)
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
+G I + +P ++ +G+ G + R+ AW ++L
Sbjct: 59 AVGAIAGVLVLVVTGWPVMAVGAVLLALGWRGLSGGAA--EERTAMRRLEGLAAWTESLR 116
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
I +G+ +QA+ I + L + + L A F +
Sbjct: 117 D-TIAGAAGL--EQAIP---SSIRAAAPMLRPHLRALVDRLHTRMPLPDALRLFADELDD 170
Query: 249 DCVRNATQALIQSDRY-GTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMII 304
ALI + + G + D L L R E M +A + +V +++
Sbjct: 171 PSADLVVAALILNSKLRGPGLRDVLGALAVSAREELDMRRRVEAERRSTRRSVQIVV 227
>gi|323934475|gb|EGB30883.1| general secretion pathway protein F [Escherichia coli E1520]
Length = 398
Score = 36.8 bits (84), Expect = 4.7, Method: Composition-based stats.
Identities = 16/157 (10%), Positives = 52/157 (33%), Gaps = 14/157 (8%)
Query: 172 VQKRQSSIKR-AWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELS 230
V+ R+ I L + + ++++L + + + L + + + +
Sbjct: 49 VKTRRPRISHSELTLFTRQLATLSAAALPLEESLAVIGQ--QSSNKRLGDVLNQVRSAIL 106
Query: 231 FLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKK 290
A ++F + + L+++ + L L + + +
Sbjct: 107 EGHPLSDALQHFPTLFD-----SLYRTLVKAGEKSGLLAPVLEKLADYNENRQKIR---- 157
Query: 291 AASLGPKLTVP-MIIFFLPVLILVIIGPAILSIIDTM 326
+ L L P M+ ++++++ + I +
Sbjct: 158 -SKLIQSLIYPCMLTTVAIGVVIILLTAVVPKITEQF 193
>gi|302392522|ref|YP_003828342.1| type II secretion system F domain protein [Acetohalobium arabaticum
DSM 5501]
gi|302204599|gb|ADL13277.1| Type II secretion system F domain protein [Acetohalobium arabaticum
DSM 5501]
Length = 403
Score = 36.8 bits (84), Expect = 4.7, Method: Composition-based stats.
Identities = 12/119 (10%), Positives = 41/119 (34%), Gaps = 7/119 (5%)
Query: 168 ISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIA 227
+ + +++ + + +++G+S+ +AL + + + L E +
Sbjct: 52 LGDKLKQFKKVKLKDLALFCRQFATMIDAGVSLVRALDILGD--QTGNPKLREAIRSVQE 109
Query: 228 ELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLME 286
+ + A E + +++++ G + + L + E M+
Sbjct: 110 HVEGGVSLSNALEE-----EDHVFPRLFISMVEAGETGGILDEVLLEMADHFEKENEMK 163
>gi|20091916|ref|NP_617991.1| hypothetical protein MA3098 [Methanosarcina acetivorans C2A]
gi|19917114|gb|AAM06471.1| hypothetical protein (multi-domain) [Methanosarcina acetivorans
C2A]
Length = 453
Score = 36.8 bits (84), Expect = 4.7, Method: Composition-based stats.
Identities = 21/162 (12%), Positives = 60/162 (37%), Gaps = 3/162 (1%)
Query: 153 VILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIG 212
+++I ++ P + +++ + A+ D L L + G ID +A
Sbjct: 118 MLIIAFIIATLPYSIDVLMQKRKLRKQEVAFSDFLYKLSELMRGG--IDPVKGVIALS-R 174
Query: 213 GQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSL 272
G+ + +E+ + L + + + V ++++ G ++ D +
Sbjct: 175 GELGAIKKEVQDCASFLVLGHSLEYSMNRLNEAIGSKLVAKYINIIVEAAHTGGNVADLV 234
Query: 273 RVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVI 314
+ R+ +E EK+ + + + +L+ ++
Sbjct: 235 FRTSEDMRAVISLEREKENNLKQYAVVFYLAQGIMVMLVYIL 276
>gi|326441911|ref|ZP_08216645.1| hypothetical protein SclaA2_12644 [Streptomyces clavuligerus ATCC
27064]
Length = 274
Score = 36.8 bits (84), Expect = 4.7, Method: Composition-based stats.
Identities = 23/126 (18%), Positives = 49/126 (38%), Gaps = 6/126 (4%)
Query: 203 ALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSD 262
A V + +GG P+ E +L A + A+ + + L ++
Sbjct: 153 AAEAVGDSLGG---PVGERLLRACAAVRLGGEPGSAWGAVA---GLPGAAELARCLARAH 206
Query: 263 RYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
G + + + R++R A +A +T P+ + FLP + V + P ++ +
Sbjct: 207 ASGAPAAEPVARVAVRLRADRARAAAARARRAQVLITAPVGLCFLPAFLAVGVAPVVIGL 266
Query: 323 IDTMKD 328
D + +
Sbjct: 267 ADGLLN 272
>gi|330883209|gb|EGH17358.1| general secretion pathway protein GspF [Pseudomonas syringae pv.
glycinea str. race 4]
Length = 229
Score = 36.8 bits (84), Expect = 4.7, Method: Composition-based stats.
Identities = 23/146 (15%), Positives = 51/146 (34%), Gaps = 8/146 (5%)
Query: 182 AWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFEN 241
A L + +G ++++L + + G E ++ VA E
Sbjct: 63 ALVSFTQQLATLLGAGQPLERSLGILLKQPGQPQTKALIE--RIREQVKAGKPLSVALEE 120
Query: 242 FYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVP 301
+ +++++ G ++ +LR L +L+ E A + P V
Sbjct: 121 -----EGTQFSPLYISMVRAGEAGGALESTLRQLSDYLERSQLLRGEVINALIYPAFLVV 175
Query: 302 MIIFFLPVLILVIIGPAILSIIDTMK 327
++ L L+L + P + I +
Sbjct: 176 GVLGSL-ALLLAYVVPQFVPIFKDLG 200
>gi|117619869|ref|YP_855104.1| general secretion pathway protein F [Aeromonas hydrophila subsp.
hydrophila ATCC 7966]
gi|117561276|gb|ABK38224.1| general secretion pathway protein F [Aeromonas hydrophila subsp.
hydrophila ATCC 7966]
Length = 406
Score = 36.8 bits (84), Expect = 4.8, Method: Composition-based stats.
Identities = 21/159 (13%), Positives = 55/159 (34%), Gaps = 16/159 (10%)
Query: 175 RQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPN 234
R+ + L V +G++I++AL+ VAE L + +++ +
Sbjct: 60 RRGASTAELAMITRQLATLVGAGLTIEEALKAVAEQCEKAH--LRSMVATVRSKVVEGYS 117
Query: 235 RQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASL 294
+ F + ++++ + + L L T + M L
Sbjct: 118 LADSLAAFPHVFD-----QLFRSMVAAGEKSGHLEKVLNRLADYTEQRQHMRT-----KL 167
Query: 295 GPKLTVPMIIFF----LPVLILVIIGPAILSIIDTMKDH 329
+ P+++ + ++L + P +++ + M
Sbjct: 168 LQAMIYPIVLTCVAIGVISILLTAVVPKVVAQFEHMGQQ 206
>gi|217967264|ref|YP_002352770.1| type II secretion system protein [Dictyoglomus turgidum DSM 6724]
gi|217336363|gb|ACK42156.1| type II secretion system protein [Dictyoglomus turgidum DSM 6724]
Length = 409
Score = 36.8 bits (84), Expect = 4.8, Method: Composition-based stats.
Identities = 22/169 (13%), Positives = 60/169 (35%), Gaps = 16/169 (9%)
Query: 165 SVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLL 224
S+ ++ +K + +G+S+ L ++E +S L + +
Sbjct: 54 SLTLAPKKEKVGKVKLTDLTVFTRQFATMINAGLSLSTCLNILSE--QSESKALRQILKE 111
Query: 225 TIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERL 284
+ + AF F N ++++ ++ ++L L ++
Sbjct: 112 IQRMVDEGSSLSEAFAKFPN-----VFSPLYINMVKAAESAGTLDETLERLAVTLEKQQE 166
Query: 285 MEAEKKAASLGPKLTVPMIIFFLPV----LILVIIGPAILSIIDTMKDH 329
+ + K+A +T P+I+ + + +L + P + ++M
Sbjct: 167 LRRKIKSA-----MTYPVIVLIIAIGAGFGMLTFLVPIFAGMFESMGAQ 210
>gi|204927253|ref|ZP_03218455.1| protein transport protein HofC [Salmonella enterica subsp. enterica
serovar Javiana str. GA_MM04042433]
gi|204323918|gb|EDZ09113.1| protein transport protein HofC [Salmonella enterica subsp. enterica
serovar Javiana str. GA_MM04042433]
Length = 400
Score = 36.8 bits (84), Expect = 4.8, Method: Composition-based stats.
Identities = 26/148 (17%), Positives = 49/148 (33%), Gaps = 10/148 (6%)
Query: 181 RAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFE 240
+ +L + +GI Q L E +G S S+ + E++ +A +
Sbjct: 261 QKLAQIFTVLALTQSAGIPFLQGLESAIESLG--SPYWSQRLTQVHQEIAAGNPVWLALK 318
Query: 241 NFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV 300
N L+++ S+ L L L A+ A+ L P L +
Sbjct: 319 N------TQEFSPLCLQLVRTGEASGSLDIMLHNLARHHSETTLALADNLASLLEPALLI 372
Query: 301 PMIIFFLPVLILVIIGPAILSIIDTMKD 328
+ ++V + I + D M
Sbjct: 373 ITGLII--GTLVVAMYLPIFHLGDAMSG 398
>gi|319900698|ref|YP_004160426.1| MscS Mechanosensitive ion channel [Bacteroides helcogenes P 36-108]
gi|319415729|gb|ADV42840.1| MscS Mechanosensitive ion channel [Bacteroides helcogenes P 36-108]
Length = 602
Score = 36.8 bits (84), Expect = 4.9, Method: Composition-based stats.
Identities = 13/88 (14%), Positives = 37/88 (42%), Gaps = 3/88 (3%)
Query: 88 NLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQ 147
L L +E +L+ GF ++++ ++R ++ + + ++ G +
Sbjct: 344 RLFHYLANEVQSERLKLRGFYPDWAIPTFHIIRFLLCAFMIAMIYPYLPGSKSGVFQGIS 403
Query: 148 LRVGAVILIG---YVGFCAPSVWISNLV 172
+ VG ++ +G +G + I+ +
Sbjct: 404 VFVGLIVSLGSSTVIGNIIAGLVITYMR 431
>gi|78484597|ref|YP_390522.1| general secretion pathway protein F [Thiomicrospira crunogena
XCL-2]
gi|78362883|gb|ABB40848.1| Type II secretion pathway protein F [Thiomicrospira crunogena
XCL-2]
Length = 404
Score = 36.8 bits (84), Expect = 4.9, Method: Composition-based stats.
Identities = 24/149 (16%), Positives = 55/149 (36%), Gaps = 10/149 (6%)
Query: 182 AWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAE-LSFLPNRQVAFE 240
+ + +G+ + ALR VA + L + I E +S + A
Sbjct: 66 DLSLMTRQIFTLLGAGMPMADALRSVANQAENK---LMKRFATGIFEKVSEGHSYAQALT 122
Query: 241 NFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV 300
+ R+ + + G + + L + + + + ++A + P L V
Sbjct: 123 SSGFNLP----RDYVATVRAGEESG-HLVEVLSRMAESIEKQEKIRKKMRSALIYPTLMV 177
Query: 301 PMIIFFLPVLILVIIGPAILSIIDTMKDH 329
M + + L+ ++ P ++S+ D M +
Sbjct: 178 VMAVAIILFLMAFVV-PKVVSVFDNMNQN 205
>gi|257868320|ref|ZP_05647973.1| conserved hypothetical protein [Enterococcus casseliflavus EC30]
gi|257802434|gb|EEV31306.1| conserved hypothetical protein [Enterococcus casseliflavus EC30]
Length = 278
Score = 36.8 bits (84), Expect = 5.0, Method: Composition-based stats.
Identities = 44/218 (20%), Positives = 86/218 (39%), Gaps = 25/218 (11%)
Query: 111 YSLNILLVVRLVVPIIFLILG--IIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWI 168
++LN RL + ++G I G L+ Y + V A GY+G+ + +
Sbjct: 7 HALNSAYGERLSGKDLIFLIGYPAFIIGGLVFLMTYLWWAVVIAAFAGGYLGY---RIIL 63
Query: 169 SNLVQKR-QSSIKRAWPDALDLLL-ICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTI 226
V++R ++ A L L+ + + ++DQ+L+ V + + G L+ E+ I
Sbjct: 64 PMTVERRYETQSFLARNKFLTLMTQVMEDQTRTVDQSLQLVVKRLDG---ELARELTQLI 120
Query: 227 AELSFLPN--RQVA-FENFYNRTQMDCVRNATQALIQSD---RYGTSIGDSLRVLVSETR 280
A L+ + R A + R D Q L Q + + G + L +
Sbjct: 121 AALNVGSDPQRVSALLKELGERYSADLF--FGQYLDQLETILQEGKENVEVL----QDIF 174
Query: 281 SERLMEAEKKAASLGPK---LTVPMIIFFLPVLILVII 315
+ EK K L+ I+ +L+++++
Sbjct: 175 TYHNKVLEKMNEFRKIKDSLLSGVKIMTIAFLLLILLM 212
>gi|320102340|ref|YP_004177931.1| type II secretion system F domain-containing protein [Isosphaera
pallida ATCC 43644]
gi|319749622|gb|ADV61382.1| Type II secretion system F domain protein [Isosphaera pallida ATCC
43644]
Length = 357
Score = 36.8 bits (84), Expect = 5.0, Method: Composition-based stats.
Identities = 20/149 (13%), Positives = 48/149 (32%), Gaps = 9/149 (6%)
Query: 180 KRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAF 239
L + G+ +++ L + + G L + L A
Sbjct: 10 SNTLARFCRLWSQSLSGGVDLNRTLATLEQRFGQSG--LGSALGAVRRSLQGGATLVEAL 67
Query: 240 ENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLT 299
E+ + + ++ G ++LR L + + A + P +
Sbjct: 68 ED----SGAFD-SFFVSLMRVAEARGG-YAETLRELADHYEQRHRLIRTARGALIQPAIV 121
Query: 300 VPMIIFFLPVLILVIIGPAILSIIDTMKD 328
+ + F + +L+ + PA S++ + D
Sbjct: 122 LAL-AFLVTILVASLALPAFASLLTDLGD 149
>gi|237801182|ref|ZP_04589643.1| general secretion pathway protein F [Pseudomonas syringae pv.
oryzae str. 1_6]
gi|331024039|gb|EGI04096.1| general secretion pathway protein F [Pseudomonas syringae pv.
oryzae str. 1_6]
Length = 228
Score = 36.8 bits (84), Expect = 5.0, Method: Composition-based stats.
Identities = 23/146 (15%), Positives = 51/146 (34%), Gaps = 8/146 (5%)
Query: 182 AWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFEN 241
A L + +G ++++L + + G E ++ VA E
Sbjct: 63 ALVSFTQQLATLLGAGQPLERSLGILLKQPGQPQTKALIE--RIREQVKAGKPLSVALEE 120
Query: 242 FYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVP 301
+ +++++ G ++ +LR L +L+ E A + P V
Sbjct: 121 -----EGTQFSPLYISMVRAGEAGGALESTLRQLSDYLERSQLLRGEVINALIYPAFLVV 175
Query: 302 MIIFFLPVLILVIIGPAILSIIDTMK 327
++ L L+L + P + I +
Sbjct: 176 GVLGSL-ALLLAYVVPQFVPIFKDLG 200
>gi|294793881|ref|ZP_06759018.1| putative bacterial type II secretion system protein F domain
protein [Veillonella sp. 3_1_44]
gi|294455451|gb|EFG23823.1| putative bacterial type II secretion system protein F domain
protein [Veillonella sp. 3_1_44]
Length = 391
Score = 36.8 bits (84), Expect = 5.0, Method: Composition-based stats.
Identities = 28/140 (20%), Positives = 55/140 (39%), Gaps = 18/140 (12%)
Query: 190 LLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAE-LSFLPNRQVAFENFYNRTQM 248
L + +ESG+ + +AL+ + + G + + E + A
Sbjct: 65 LGLLIESGVPLRRALQLLCQGKRGL-------LYTALYESIERGQTLSQALR-------S 110
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSET-RSERLMEAEKKAASLGPKLTVPMIIFFL 307
+ AL++S ++G+SL+ + +L + A S L + M IFFL
Sbjct: 111 EGCPPIALALLESGEAAGTLGESLQYISRHYDWERQLKQKVMSAISYPLFLLLMMNIFFL 170
Query: 308 PVLILVIIGPAILSIIDTMK 327
++ +I P+ + TM
Sbjct: 171 VTILFII--PSFEQVFTTMH 188
>gi|124003178|ref|ZP_01688028.1| small GTP-binding protein domain [Microscilla marina ATCC 23134]
gi|123991276|gb|EAY30707.1| small GTP-binding protein domain [Microscilla marina ATCC 23134]
Length = 836
Score = 36.8 bits (84), Expect = 5.0, Method: Composition-based stats.
Identities = 15/91 (16%), Positives = 39/91 (42%), Gaps = 5/91 (5%)
Query: 126 IFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRA--- 182
FL +++F +D + + ++ + AP + + N + + + I R
Sbjct: 366 FFLTKNSVYVFVWDARKDEAQSKFNYWLHIVTLLSDKAPIIVVQNKIDEYHTDINRQNWR 425
Query: 183 --WPDALDLLLICVESGISIDQALRRVAEDI 211
+P+ +D + ++G SI+ + V ++
Sbjct: 426 KAFPNIIDFVKTSCKTGESIEALRQVVVNEL 456
>gi|16131206|ref|NP_417786.1| general secretory pathway component, cryptic [Escherichia coli str.
K-12 substr. MG1655]
gi|89110683|ref|AP_004463.1| general secretory pathway component, cryptic [Escherichia coli str.
K-12 substr. W3110]
gi|157162801|ref|YP_001460119.1| general secretion pathway protein F [Escherichia coli HS]
gi|170018437|ref|YP_001723391.1| general secretion pathway protein F [Escherichia coli ATCC 8739]
gi|170082846|ref|YP_001732166.1| general secretory pathway component, cryptic [Escherichia coli str.
K-12 substr. DH10B]
gi|188492194|ref|ZP_02999464.1| general secretion pathway protein F [Escherichia coli 53638]
gi|194439988|ref|ZP_03072047.1| general secretion pathway protein F [Escherichia coli 101-1]
gi|238902418|ref|YP_002928214.1| general secretory pathway component, cryptic [Escherichia coli
BW2952]
gi|253771849|ref|YP_003034680.1| general secretion pathway protein F [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|254038488|ref|ZP_04872544.1| general secretory pathway component [Escherichia sp. 1_1_43]
gi|254163255|ref|YP_003046363.1| general secretory pathway component, cryptic [Escherichia coli B
str. REL606]
gi|256025945|ref|ZP_05439810.1| general secretory pathway component, cryptic [Escherichia sp.
4_1_40B]
gi|300903575|ref|ZP_07121497.1| general secretion pathway protein F [Escherichia coli MS 84-1]
gi|300918300|ref|ZP_07134904.1| general secretion pathway protein F [Escherichia coli MS 115-1]
gi|300932220|ref|ZP_07147499.1| general secretion pathway protein F [Escherichia coli MS 187-1]
gi|301021123|ref|ZP_07185163.1| general secretion pathway protein F [Escherichia coli MS 196-1]
gi|301305536|ref|ZP_07211628.1| general secretion pathway protein F [Escherichia coli MS 124-1]
gi|301643853|ref|ZP_07243884.1| general secretion pathway protein F [Escherichia coli MS 146-1]
gi|307140010|ref|ZP_07499366.1| general secretory pathway component, cryptic [Escherichia coli
H736]
gi|312972412|ref|ZP_07786586.1| general secretion pathway protein F [Escherichia coli 1827-70]
gi|331644023|ref|ZP_08345152.1| general secretion pathway protein F [Escherichia coli H736]
gi|1170055|sp|P41441|GSPF_ECOLI RecName: Full=Putative general secretion pathway protein F;
AltName: Full=Protein transport protein hofF
gi|606261|gb|AAA58124.1| ORF_o398 [Escherichia coli str. K-12 substr. MG1655]
gi|1789724|gb|AAC76352.1| general secretory pathway component, cryptic [Escherichia coli str.
K-12 substr. MG1655]
gi|85676714|dbj|BAE77964.1| general secretory pathway component, cryptic [Escherichia coli str.
K12 substr. W3110]
gi|157068481|gb|ABV07736.1| general secretion pathway protein F [Escherichia coli HS]
gi|169753365|gb|ACA76064.1| general secretion pathway protein F [Escherichia coli ATCC 8739]
gi|169890681|gb|ACB04388.1| general secretory pathway component, cryptic [Escherichia coli str.
K-12 substr. DH10B]
gi|188487393|gb|EDU62496.1| general secretion pathway protein F [Escherichia coli 53638]
gi|194421096|gb|EDX37124.1| general secretion pathway protein F [Escherichia coli 101-1]
gi|226838994|gb|EEH71017.1| general secretory pathway component [Escherichia sp. 1_1_43]
gi|238861293|gb|ACR63291.1| general secretory pathway component, cryptic [Escherichia coli
BW2952]
gi|242378854|emb|CAQ33646.1| gspF [Escherichia coli BL21(DE3)]
gi|253322893|gb|ACT27495.1| general secretion pathway protein F [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|253975156|gb|ACT40827.1| general secretory pathway component, cryptic [Escherichia coli B
str. REL606]
gi|253979312|gb|ACT44982.1| general secretory pathway component, cryptic [Escherichia coli
BL21(DE3)]
gi|260447654|gb|ACX38076.1| general secretion pathway protein F [Escherichia coli DH1]
gi|299881653|gb|EFI89864.1| general secretion pathway protein F [Escherichia coli MS 196-1]
gi|300404448|gb|EFJ87986.1| general secretion pathway protein F [Escherichia coli MS 84-1]
gi|300414561|gb|EFJ97871.1| general secretion pathway protein F [Escherichia coli MS 115-1]
gi|300460044|gb|EFK23537.1| general secretion pathway protein F [Escherichia coli MS 187-1]
gi|300839231|gb|EFK66991.1| general secretion pathway protein F [Escherichia coli MS 124-1]
gi|301077756|gb|EFK92562.1| general secretion pathway protein F [Escherichia coli MS 146-1]
gi|310334789|gb|EFQ00994.1| general secretion pathway protein F [Escherichia coli 1827-70]
gi|315137902|dbj|BAJ45061.1| general secretory pathway component, cryptic [Escherichia coli DH1]
gi|315255910|gb|EFU35878.1| general secretion pathway protein F [Escherichia coli MS 85-1]
gi|315618944|gb|EFU99527.1| general secretion pathway protein F [Escherichia coli 3431]
gi|323939250|gb|EGB35462.1| general secretion pathway protein F [Escherichia coli E482]
gi|323959522|gb|EGB55175.1| general secretion pathway protein F [Escherichia coli H489]
gi|323970131|gb|EGB65405.1| general secretion pathway protein F [Escherichia coli TA007]
gi|331036317|gb|EGI08543.1| general secretion pathway protein F [Escherichia coli H736]
gi|332345273|gb|AEE58607.1| general secretion pathway protein GspF [Escherichia coli UMNK88]
Length = 398
Score = 36.8 bits (84), Expect = 5.1, Method: Composition-based stats.
Identities = 16/157 (10%), Positives = 52/157 (33%), Gaps = 14/157 (8%)
Query: 172 VQKRQSSIKR-AWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELS 230
V+ R+ I L + + ++++L + + + L + + + +
Sbjct: 49 VKTRRPRISHSELTLFTRQLATLSAAALPLEESLAVIGQ--QSSNKRLGDVLNQVRSAIL 106
Query: 231 FLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKK 290
A ++F + + L+++ + L L + + +
Sbjct: 107 EGHPLSDALQHFPTLFD-----SLYRTLVKAGEKSGLLAPVLEKLADYNENRQKIR---- 157
Query: 291 AASLGPKLTVP-MIIFFLPVLILVIIGPAILSIIDTM 326
+ L L P M+ ++++++ + I +
Sbjct: 158 -SKLIQSLIYPCMLTTVAIGVVIILLTAVVPKITEQF 193
>gi|294813376|ref|ZP_06772019.1| Integral membrane protein [Streptomyces clavuligerus ATCC 27064]
gi|294325975|gb|EFG07618.1| Integral membrane protein [Streptomyces clavuligerus ATCC 27064]
Length = 256
Score = 36.8 bits (84), Expect = 5.1, Method: Composition-based stats.
Identities = 23/126 (18%), Positives = 49/126 (38%), Gaps = 6/126 (4%)
Query: 203 ALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSD 262
A V + +GG P+ E +L A + A+ + + L ++
Sbjct: 135 AAEAVGDSLGG---PVGERLLRACAAVRLGGEPGSAWGAVA---GLPGAAELARCLARAH 188
Query: 263 RYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
G + + + R++R A +A +T P+ + FLP + V + P ++ +
Sbjct: 189 ASGAPAAEPVARVAVRLRADRARAAAARARRAQVLITAPVGLCFLPAFLAVGVAPVVIGL 248
Query: 323 IDTMKD 328
D + +
Sbjct: 249 ADGLLN 254
>gi|237786542|ref|YP_002907247.1| hypothetical protein ckrop_1996 [Corynebacterium kroppenstedtii DSM
44385]
gi|237759454|gb|ACR18704.1| hypothetical protein ckrop_1996 [Corynebacterium kroppenstedtii DSM
44385]
Length = 216
Score = 36.8 bits (84), Expect = 5.1, Method: Composition-based stats.
Identities = 23/151 (15%), Positives = 62/151 (41%), Gaps = 5/151 (3%)
Query: 169 SNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQS---VPLSEEMLLT 225
V+ Q + W A ++ + +G S A+R VA+++ G ++ E+
Sbjct: 23 DKQVRINQRQVIAQWAQASSMIASELLAGASPLVAVRHVADEMDGADDMEGQVARELRTM 82
Query: 226 IAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLM 285
+ ++L + + + + +A + S R G + + ++ ++ +++
Sbjct: 83 VNHCAWLGAPCAPLSTWSSEPEQVGRQAIARAWLVSHRTGVPLAEVMQATAADLQAKLHH 142
Query: 286 EAEKKAASLGPKLTVPMIIFFLPVLILVIIG 316
+ +A+ GP+ + + L+ V +G
Sbjct: 143 QERTEASLAGPRAS--TRVLMFLPLVGVAMG 171
>gi|332527682|ref|ZP_08403725.1| general secretion pathway protein F [Rubrivivax benzoatilyticus
JA2]
gi|332112082|gb|EGJ12058.1| general secretion pathway protein F [Rubrivivax benzoatilyticus
JA2]
Length = 405
Score = 36.8 bits (84), Expect = 5.2, Method: Composition-based stats.
Identities = 27/139 (19%), Positives = 55/139 (39%), Gaps = 8/139 (5%)
Query: 190 LLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMD 249
L V SG+ +++AL +A++ Q E ++ +E++ A R +
Sbjct: 75 LAGLVGSGLPLERALTALADEAEDQRQ--RELLVHLRSEVNAGSPFARALAT-APREFDE 131
Query: 250 CVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPV 309
R A QS ++G L L + + + A+ A L P + V +I +
Sbjct: 132 VYRAVVAAGEQS----GALGAVLERLAQDLEDRQALRAKLLGAMLYPAI-VSLIALVIVT 186
Query: 310 LILVIIGPAILSIIDTMKD 328
++ + P + ++ K
Sbjct: 187 FLVTYVVPQVATVFSNTKQ 205
>gi|310765051|gb|ADP10001.1| type IV pilin biogenesis protein [Erwinia sp. Ejp617]
Length = 399
Score = 36.8 bits (84), Expect = 5.2, Method: Composition-based stats.
Identities = 20/143 (13%), Positives = 44/143 (30%), Gaps = 10/143 (6%)
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
L L +++G+ + L+ +A+ G + +S A +
Sbjct: 64 FLRQLATLLKAGMPLPACLQLLAD--GHPEAGWQALLTHLHQRISAGEPFSQALREWP-- 119
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
D AL+ + + L + E+ +K M +
Sbjct: 120 ---DIFPPLIPALVHIGELTGELDECCLQLA--IQQEKQQLLRQKVQKALRYPLFIMAVA 174
Query: 306 FLPVL-ILVIIGPAILSIIDTMK 327
L + +LV + P ++I +
Sbjct: 175 LLVSIGMLVFVLPEFVAIYRSFN 197
>gi|295112043|emb|CBL28793.1| Type II secretory pathway, component PulF [Synergistetes bacterium
SGP1]
Length = 382
Score = 36.8 bits (84), Expect = 5.2, Method: Composition-based stats.
Identities = 24/154 (15%), Positives = 51/154 (33%), Gaps = 18/154 (11%)
Query: 167 WISNLVQKRQSSIKRAWPDALDL------LLICVESGISIDQALRRVAEDIGGQSVPLSE 220
W+ +K R + L L L + SGI + QALR + P +
Sbjct: 230 WMKRRGKKIAIPFMRGINEQLTLALVTSHLSTLLRSGIPLVQALR-----MASSMDPRAR 284
Query: 221 EMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETR 280
L + A RT A+++ G + +L + + R
Sbjct: 285 RWLDCAEMVKAGHRFDRAL----ERTGFPEE---IVAVVRVGEMGGELSQALSNVSGQCR 337
Query: 281 SERLMEAEKKAASLGPKLTVPMIIFFLPVLILVI 314
E+ + + P + + + + +++ ++
Sbjct: 338 EIAQSRMERLSTLMEPMMVLLLGVSVGFIVLAIL 371
>gi|259907451|ref|YP_002647807.1| type IV pilin biogenesis protein [Erwinia pyrifoliae Ep1/96]
gi|224963073|emb|CAX54556.1| Putative outer membrane protein export (MTB) system [Erwinia
pyrifoliae Ep1/96]
gi|283477284|emb|CAY73200.1| Type IV pilus assembly protein tapC [Erwinia pyrifoliae DSM 12163]
Length = 399
Score = 36.8 bits (84), Expect = 5.2, Method: Composition-based stats.
Identities = 20/143 (13%), Positives = 45/143 (31%), Gaps = 10/143 (6%)
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
L L +++G+ + L+ +A+ G ++ +S A +
Sbjct: 64 FLRQLATLLKAGMPLPACLQLLAD--GHPEAGWQALLIHLHQRISAGEPFSQALREWP-- 119
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
D AL+ + + L + E+ +K M +
Sbjct: 120 ---DIFPPLIPALVHIGELTGELDECCLQLA--IQQEKQQLLRQKVQKALRYPLFIMAVA 174
Query: 306 FLPVL-ILVIIGPAILSIIDTMK 327
L + +LV + P ++I +
Sbjct: 175 LLVSIGMLVFVLPEFVAIYRSFN 197
>gi|295678177|ref|YP_003606701.1| general secretion pathway protein F [Burkholderia sp. CCGE1002]
gi|295438020|gb|ADG17190.1| general secretion pathway protein F [Burkholderia sp. CCGE1002]
Length = 405
Score = 36.4 bits (83), Expect = 5.3, Method: Composition-based stats.
Identities = 28/166 (16%), Positives = 60/166 (36%), Gaps = 16/166 (9%)
Query: 165 SVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLL 224
+ + + +R+ +I L + +G+ +D+AL + E + E M
Sbjct: 56 RLALGRRLSQREQAILTR------QLASLLIAGLPLDEALSVLTEQSERDY--IRELMAA 107
Query: 225 TIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERL 284
AE+ + A + +AL+ + + +G L L E+
Sbjct: 108 IRAEVLGGHSLANALQQHPK-----DFPEIYRALVAAGEHTGKLGLVLSRLADYI--EQR 160
Query: 285 MEAEKKAASLGPKLTVPMIIFFLPVLILV-IIGPAILSIIDTMKDH 329
++K T+ II F V L+ + P ++++ + K
Sbjct: 161 NALKQKIVLAFTYPTIVTIIAFGIVTFLLSYVVPQVVNVFASTKQQ 206
>gi|297566543|ref|YP_003685515.1| Type II secretion system F domain-containing protein [Meiothermus
silvanus DSM 9946]
gi|296850992|gb|ADH64007.1| Type II secretion system F domain protein [Meiothermus silvanus DSM
9946]
Length = 408
Score = 36.4 bits (83), Expect = 5.3, Method: Composition-based stats.
Identities = 22/154 (14%), Positives = 49/154 (31%), Gaps = 16/154 (10%)
Query: 180 KRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAF 239
+ L + +G+ I QAL + + + + E+ + A
Sbjct: 64 LKDLAIFSRQLATMLSAGLPIVQALAIL--EKQTEKKSFRAIIKDVRTEVEGGASFSEAL 121
Query: 240 ENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLT 299
L+++ ++ L L + + + + K+A LT
Sbjct: 122 ARHPKL-----FNRLYMNLVRAGETSGNLDAILDRLSAFLEKDLELRGKIKSA-----LT 171
Query: 300 VPMIIFFLPV----LILVIIGPAILSIIDTMKDH 329
P I+F + +L I P +I+ ++
Sbjct: 172 YPTIVFVFAIGVTYFLLTGIVPQFANILTSLNAQ 205
>gi|83765548|dbj|BAE55691.1| unnamed protein product [Aspergillus oryzae]
Length = 470
Score = 36.4 bits (83), Expect = 5.3, Method: Composition-based stats.
Identities = 15/102 (14%), Positives = 36/102 (35%), Gaps = 6/102 (5%)
Query: 205 RRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDC--VRNATQALIQSD 262
R+ ++ G+ +E++ ++ L + A+ + + + +
Sbjct: 125 DRLEHELRGKFQMGNEDLGQHYHQIGDLVSASKAYSRMRDYCTTPSHIASMLFKIINVAI 184
Query: 263 RYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMII 304
G D L V R L +++ A PK++ M +
Sbjct: 185 ERG----DWLSVQSHVQRLRNLQSKQEEQAKNQPKMSAAMGL 222
>gi|300946549|ref|ZP_07160814.1| general secretion pathway protein F [Escherichia coli MS 116-1]
gi|300954742|ref|ZP_07167175.1| general secretion pathway protein F [Escherichia coli MS 175-1]
gi|300318293|gb|EFJ68077.1| general secretion pathway protein F [Escherichia coli MS 175-1]
gi|300453795|gb|EFK17415.1| general secretion pathway protein F [Escherichia coli MS 116-1]
Length = 398
Score = 36.4 bits (83), Expect = 5.5, Method: Composition-based stats.
Identities = 16/157 (10%), Positives = 52/157 (33%), Gaps = 14/157 (8%)
Query: 172 VQKRQSSIKR-AWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELS 230
V+ R+ I L + + ++++L + + + L + + + +
Sbjct: 49 VKTRRPRISHSELTLFTRQLATLSAAALPLEESLAVIGQ--QSSNKRLGDVLNQVRSAIL 106
Query: 231 FLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKK 290
A ++F + + L+++ + L L + + +
Sbjct: 107 EGHPLSDALQHFPTLFD-----SLYRTLVKAGEKSGLLAPVLEKLADYNENRQKIR---- 157
Query: 291 AASLGPKLTVP-MIIFFLPVLILVIIGPAILSIIDTM 326
+ L L P M+ ++++++ + I +
Sbjct: 158 -SKLIQSLIYPCMLTTVAIGVVIILLTAVVPKITEQF 193
>gi|209922063|ref|YP_002296136.1| PilR protein [Escherichia coli SE11]
gi|209915241|dbj|BAG80314.1| PilR protein [Escherichia coli SE11]
Length = 365
Score = 36.4 bits (83), Expect = 5.5, Method: Composition-based stats.
Identities = 21/192 (10%), Positives = 65/192 (33%), Gaps = 16/192 (8%)
Query: 131 GIIWIFGYDKLLE-YPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIK-------RA 182
+ +++G ++ Y V ++ G + + P+ + V+ I
Sbjct: 169 ALGFLYGLSVFVDNYGAICSVLFAVITGLISWSLPNWKSPDSVRTFADKIMPWSIYQDIQ 228
Query: 183 WPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENF 242
L + +++ ++ +L + ++ S LS + I + + +A
Sbjct: 229 GATFLLNIAALLKAKMTTLNSLNIL-QEFA--SPWLSTRLDSIIYRVRQGDHLGLALRQC 285
Query: 243 YNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPM 302
+ N L G + + S+ L +K+A + + + +
Sbjct: 286 GYQFPSREAANFLSLLQ-----GDGATELISNYGQRWLSQTLQRVKKRANVIRLIMLIFL 340
Query: 303 IIFFLPVLILVI 314
++ + ++ ++
Sbjct: 341 VMSLMLLVFAIM 352
>gi|16081664|ref|NP_394034.1| flagellar assembly protein J [Thermoplasma acidophilum DSM 1728]
gi|10639728|emb|CAC11700.1| hypothetical membrane protein [Thermoplasma acidophilum]
Length = 551
Score = 36.4 bits (83), Expect = 5.6, Method: Composition-based stats.
Identities = 19/150 (12%), Positives = 45/150 (30%), Gaps = 6/150 (4%)
Query: 122 VVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKR 181
+ I + I + + + L + ++ +G F + R++ I
Sbjct: 20 LSIIAGSAVLSIMFYLIYYMTKKTVILLLFVMLALGAAFFFLKPII---DRDNRKNDINS 76
Query: 182 AWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELS-FLPNRQVAFE 240
P + S +I + L +++ L +E+ + + + A
Sbjct: 77 NIPFFITAFSSLATSDANIIEVLDILSKKEKLGY--LRKELEKILNLVRNWGMGLAEAMS 134
Query: 241 NFYNRTQMDCVRNATQALIQSDRYGTSIGD 270
RT D + + G I +
Sbjct: 135 FVAKRTPSDIFSDFLTRFGHAIDSGQDIQE 164
>gi|322386868|ref|ZP_08060492.1| PTS family beta-glucosides porter, IIABC component [Streptococcus
cristatus ATCC 51100]
gi|321269150|gb|EFX52086.1| PTS family beta-glucosides porter, IIABC component [Streptococcus
cristatus ATCC 51100]
Length = 628
Score = 36.4 bits (83), Expect = 5.6, Method: Composition-based stats.
Identities = 15/75 (20%), Positives = 33/75 (44%)
Query: 118 VVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQS 177
V +V+ ++ + + + E G + ++G G P+ I + K +
Sbjct: 175 AVGIVLGMMLVSGSLPNAWAVASGGEVTAMKFFGFIPVVGLQGSVLPAFIIGVVGAKFEK 234
Query: 178 SIKRAWPDALDLLLI 192
++++ PD LDLL+
Sbjct: 235 AVRKVVPDVLDLLVT 249
>gi|256829538|ref|YP_003158266.1| type II secretion system protein [Desulfomicrobium baculatum DSM
4028]
gi|256578714|gb|ACU89850.1| type II secretion system protein [Desulfomicrobium baculatum DSM
4028]
Length = 401
Score = 36.4 bits (83), Expect = 5.6, Method: Composition-based stats.
Identities = 13/97 (13%), Positives = 30/97 (30%), Gaps = 7/97 (7%)
Query: 181 RAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFE 240
R + +G+ I QAL+ + E ++ L ++ ++ + A +
Sbjct: 62 RDMVVFSRQFATMINAGVPILQALQIMCE--QTENPKLRRKLYAVRNDIEGGSSLYEALK 119
Query: 241 NFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVS 277
D ++ + G + L L
Sbjct: 120 KHP-----DIFDALYSNMVNAGETGGILDQVLIRLAE 151
>gi|227829232|ref|YP_002831011.1| type II secretion system protein [Sulfolobus islandicus L.S.2.15]
gi|229583213|ref|YP_002841612.1| type II secretion system protein [Sulfolobus islandicus Y.N.15.51]
gi|227455679|gb|ACP34366.1| type II secretion system protein [Sulfolobus islandicus L.S.2.15]
gi|228013929|gb|ACP49690.1| type II secretion system protein [Sulfolobus islandicus Y.N.15.51]
Length = 616
Score = 36.4 bits (83), Expect = 5.6, Method: Composition-based stats.
Identities = 39/241 (16%), Positives = 85/241 (35%), Gaps = 20/241 (8%)
Query: 96 ENIVNKLRAAGFRSE---YSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGA 152
+++ K++ AG + ++ + L + L + I L++ F L + G
Sbjct: 36 KSVDMKIKKAGISQDPRLFASRLFLALILSIAISALLIAFSIRFFELYRLTLLTKYLAGF 95
Query: 153 VILIGYVGFCAPSVWISNLVQ------KRQSSIKRAWPDALDLLLICVESGISIDQALRR 206
+ LI + P V++ ++Q R+ + P + + + SG+S
Sbjct: 96 LTLIIFGVIIPPVVYLMQILQLSQSTENRRIGLDSEAPAFAAVFNVFLRSGLSARYVFDY 155
Query: 207 VAEDIGGQSVPLSEEMLLTIAELSF-LPNRQVAFENFYNRTQMDCVRNATQALIQSDRYG 265
+++ + S+ + + + A N + + + R G
Sbjct: 156 LSKSTAMRYA--SQIASYVNKRVKYLGEGVESAIVESLNYSPSKVFNEFLITYVTAVRTG 213
Query: 266 TSIGDSLRVLVSETRSERLMEAEKKAASLG-------PKLTVPMIIFFLPVLILVIIGPA 318
+ D++ + A A +L L+ I FFL VL+L I P+
Sbjct: 214 APVLDTMEAKTKDILKNIETLASTAAENLSGIAEGFVIWLSSGFITFFL-VLLLQAIFPS 272
Query: 319 I 319
+
Sbjct: 273 L 273
>gi|167550661|ref|ZP_02344418.1| protein transport protein HofC [Salmonella enterica subsp. enterica
serovar Saintpaul str. SARA29]
gi|205324362|gb|EDZ12201.1| protein transport protein HofC [Salmonella enterica subsp. enterica
serovar Saintpaul str. SARA29]
Length = 400
Score = 36.4 bits (83), Expect = 5.7, Method: Composition-based stats.
Identities = 25/148 (16%), Positives = 48/148 (32%), Gaps = 10/148 (6%)
Query: 181 RAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFE 240
+ +L + +GI Q L E +G S+ + E++ +A +
Sbjct: 261 QKLAQIFTVLALTQSAGIPFLQGLESAIESLG--CPYWSQRLTQVHQEIAAGNPVWLALK 318
Query: 241 NFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV 300
N L+++ S+ L L L A+ A+ L P L +
Sbjct: 319 N------TQEFSPLCLQLVRTGEASGSLDIMLHNLARHHSETTLALADNLASLLEPALLI 372
Query: 301 PMIIFFLPVLILVIIGPAILSIIDTMKD 328
+ ++V + I + D M
Sbjct: 373 ITGLII--GTLVVAMYLPIFHLGDAMSG 398
>gi|228925184|ref|ZP_04088294.1| hypothetical protein bthur0011_60560 [Bacillus thuringiensis
serovar huazhongensis BGSC 4BD1]
gi|228834523|gb|EEM80052.1| hypothetical protein bthur0011_60560 [Bacillus thuringiensis
serovar huazhongensis BGSC 4BD1]
Length = 292
Score = 36.4 bits (83), Expect = 5.7, Method: Composition-based stats.
Identities = 22/194 (11%), Positives = 63/194 (32%), Gaps = 16/194 (8%)
Query: 125 IIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWP 184
+ + + ++ F + + ++ GF P + ++ +
Sbjct: 66 LSGMSIAAVFYFSFGRDP---------FTLITVLSGFLVPRFLLYRRKKRYYLVVIDRLS 116
Query: 185 DALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYN 244
+ + ++ + A R + + + EE+ L AF F
Sbjct: 117 IYMKAVANALQIS---NNAKRVLVQVKPMMHESIQEEIEKVSLLLEGGTTMHRAFRGFNE 173
Query: 245 RTQMDCVRNATQALIQ-SDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVP-- 301
+ + L S GT+ L + + ++L A +++ +
Sbjct: 174 TFNFRELVFFHEMLEVCSREGGTNSVQVLLDIAEDFEKQKLYLARLRSSLSQAQRAFVQN 233
Query: 302 -MIIFFLPVLILVI 314
+I+ +P++I+++
Sbjct: 234 CLIVIAMPIVIMLM 247
>gi|167747323|ref|ZP_02419450.1| hypothetical protein ANACAC_02039 [Anaerostipes caccae DSM 14662]
gi|167653301|gb|EDR97430.1| hypothetical protein ANACAC_02039 [Anaerostipes caccae DSM 14662]
Length = 500
Score = 36.4 bits (83), Expect = 5.7, Method: Composition-based stats.
Identities = 20/130 (15%), Positives = 56/130 (43%), Gaps = 4/130 (3%)
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
I+ I+ ++ +GAV + + PS+ N + I + +P L
Sbjct: 300 IITILSFPVLLLGFDWQNLYIIGAVTALIAAAWFTPSLKRKNAGGRILKEINQKFPYWLR 359
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
+ + +++ ++ A+R + + L E++ + + + P + ++NF + +
Sbjct: 360 GIALSLQT-ENVYVAIR---DSLDQAPYVLKEQIEILLRNIDEDPESILPYQNFLSEFDL 415
Query: 249 DCVRNATQAL 258
+++A++ L
Sbjct: 416 PEIQSASRML 425
>gi|229817341|ref|ZP_04447623.1| hypothetical protein BIFANG_02603 [Bifidobacterium angulatum DSM
20098]
gi|229785130|gb|EEP21244.1| hypothetical protein BIFANG_02603 [Bifidobacterium angulatum DSM
20098]
Length = 425
Score = 36.4 bits (83), Expect = 5.8, Method: Composition-based stats.
Identities = 24/150 (16%), Positives = 58/150 (38%), Gaps = 13/150 (8%)
Query: 181 RAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFE 240
+ + L V +G+S+ +AL V E ++ L + A++ + A E
Sbjct: 82 KDFAVTSRQLATMVSAGVSLIRALNIVIE--QTRNEKLRTALAECAAKIEAGSSFSQAME 139
Query: 241 NFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV 300
+ D ++++ G + SL + ++ ++ + K+A P
Sbjct: 140 E----NEDDIFPPVMVYMVRAGETGGFLDKSLITVADSFEADVRLQGQIKSALAYP---- 191
Query: 301 PMIIFF---LPVLILVIIGPAILSIIDTMK 327
+++ L ++L+ I P ++ +M
Sbjct: 192 VVVLCIALALVAVMLLTIVPMFDNMYKSMN 221
>gi|54310532|ref|YP_131552.1| putative general secretion pathway protein F [Photobacterium
profundum SS9]
gi|46914975|emb|CAG21750.1| putative general secretion pathway protein F [Photobacterium
profundum SS9]
Length = 410
Score = 36.4 bits (83), Expect = 5.8, Method: Composition-based stats.
Identities = 18/153 (11%), Positives = 50/153 (32%), Gaps = 13/153 (8%)
Query: 175 RQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPN 234
R+ L V++G+ +++ L+ V E + L +L + +
Sbjct: 64 RRGISTNELSLVTRQLATLVQAGMPLEECLKAVGE--QNEKPRLRNMLLAVRSRVVEGYT 121
Query: 235 RQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASL 294
+ + +A++ + + L L T + + M + L
Sbjct: 122 LSDSMAEYP-----HIFDQLFRAMVAAGEKSGHLDTVLNRLADYTENRQKMR-----SKL 171
Query: 295 GPKLTVPMIIFFL-PVLILVIIGPAILSIIDTM 326
+ P ++ + ++ ++ + I+D
Sbjct: 172 QQAMIYPTMLTLVAVAVVAFLLATVVPKIVDQF 204
>gi|197250502|ref|YP_002145129.1| type IV pilin biogenesis protein [Salmonella enterica subsp.
enterica serovar Agona str. SL483]
gi|197214205|gb|ACH51602.1| protein transport protein HofC [Salmonella enterica subsp. enterica
serovar Agona str. SL483]
Length = 400
Score = 36.4 bits (83), Expect = 5.9, Method: Composition-based stats.
Identities = 25/148 (16%), Positives = 48/148 (32%), Gaps = 10/148 (6%)
Query: 181 RAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFE 240
+ +L + +GI Q L E +G S+ + E++ +A +
Sbjct: 261 QKLAQIFTVLALTQSAGIPFLQGLESAIESLG--CPYWSQRLTQVHQEIAAGNPVWLALK 318
Query: 241 NFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV 300
N L+++ S+ L L L A+ A+ L P L +
Sbjct: 319 N------TQEFSPLCLQLVRTGEASGSLDIMLHNLARHHSETTLALADNLASLLEPALLI 372
Query: 301 PMIIFFLPVLILVIIGPAILSIIDTMKD 328
+ ++V + I + D M
Sbjct: 373 ITGLII--GTLVVAMYLPIFHLGDAMSG 398
>gi|322615964|gb|EFY12881.1| type IV pilin biogenesis protein [Salmonella enterica subsp.
enterica serovar Montevideo str. 315996572]
gi|322620748|gb|EFY17608.1| type IV pilin biogenesis protein [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-1]
gi|322623900|gb|EFY20737.1| type IV pilin biogenesis protein [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-3]
gi|322627348|gb|EFY24139.1| type IV pilin biogenesis protein [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-4]
gi|322630655|gb|EFY27419.1| type IV pilin biogenesis protein [Salmonella enterica subsp.
enterica serovar Montevideo str. 515920-1]
gi|322638125|gb|EFY34826.1| type IV pilin biogenesis protein [Salmonella enterica subsp.
enterica serovar Montevideo str. 515920-2]
gi|322640611|gb|EFY37262.1| type IV pilin biogenesis protein [Salmonella enterica subsp.
enterica serovar Montevideo str. 531954]
gi|322645604|gb|EFY42131.1| type IV pilin biogenesis protein [Salmonella enterica subsp.
enterica serovar Montevideo str. NC_MB110209-0054]
gi|322648101|gb|EFY44568.1| type IV pilin biogenesis protein [Salmonella enterica subsp.
enterica serovar Montevideo str. OH_2009072675]
gi|322656866|gb|EFY53152.1| type IV pilin biogenesis protein [Salmonella enterica subsp.
enterica serovar Montevideo str. CASC_09SCPH15965]
gi|322657423|gb|EFY53695.1| type IV pilin biogenesis protein [Salmonella enterica subsp.
enterica serovar Montevideo str. 19N]
gi|322663742|gb|EFY59942.1| type IV pilin biogenesis protein [Salmonella enterica subsp.
enterica serovar Montevideo str. 81038-01]
gi|322666575|gb|EFY62753.1| type IV pilin biogenesis protein [Salmonella enterica subsp.
enterica serovar Montevideo str. MD_MDA09249507]
gi|322672266|gb|EFY68378.1| type IV pilin biogenesis protein [Salmonella enterica subsp.
enterica serovar Montevideo str. 414877]
gi|322676422|gb|EFY72493.1| type IV pilin biogenesis protein [Salmonella enterica subsp.
enterica serovar Montevideo str. 366867]
gi|322679485|gb|EFY75530.1| type IV pilin biogenesis protein [Salmonella enterica subsp.
enterica serovar Montevideo str. 413180]
gi|322686186|gb|EFY82170.1| type IV pilin biogenesis protein [Salmonella enterica subsp.
enterica serovar Montevideo str. 446600]
gi|323195030|gb|EFZ80216.1| type IV pilin biogenesis protein [Salmonella enterica subsp.
enterica serovar Montevideo str. 609458-1]
gi|323200061|gb|EFZ85148.1| type IV pilin biogenesis protein [Salmonella enterica subsp.
enterica serovar Montevideo str. 556150-1]
gi|323201118|gb|EFZ86187.1| type IV pilin biogenesis protein [Salmonella enterica subsp.
enterica serovar Montevideo str. 609460]
gi|323209515|gb|EFZ94448.1| type IV pilin biogenesis protein [Salmonella enterica subsp.
enterica serovar Montevideo str. 507440-20]
gi|323212233|gb|EFZ97057.1| type IV pilin biogenesis protein [Salmonella enterica subsp.
enterica serovar Montevideo str. 556152]
gi|323216538|gb|EGA01264.1| type IV pilin biogenesis protein [Salmonella enterica subsp.
enterica serovar Montevideo str. MB101509-0077]
gi|323219887|gb|EGA04365.1| type IV pilin biogenesis protein [Salmonella enterica subsp.
enterica serovar Montevideo str. MB102109-0047]
gi|323225833|gb|EGA10053.1| type IV pilin biogenesis protein [Salmonella enterica subsp.
enterica serovar Montevideo str. MB110209-0055]
gi|323228625|gb|EGA12754.1| type IV pilin biogenesis protein [Salmonella enterica subsp.
enterica serovar Montevideo str. MB111609-0052]
gi|323236761|gb|EGA20837.1| type IV pilin biogenesis protein [Salmonella enterica subsp.
enterica serovar Montevideo str. 2009083312]
gi|323239738|gb|EGA23785.1| type IV pilin biogenesis protein [Salmonella enterica subsp.
enterica serovar Montevideo str. 2009085258]
gi|323242214|gb|EGA26243.1| type IV pilin biogenesis protein [Salmonella enterica subsp.
enterica serovar Montevideo str. 315731156]
gi|323249362|gb|EGA33278.1| type IV pilin biogenesis protein [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2009159199]
gi|323252305|gb|EGA36156.1| type IV pilin biogenesis protein [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008282]
gi|323256605|gb|EGA40335.1| type IV pilin biogenesis protein [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008283]
gi|323262974|gb|EGA46524.1| type IV pilin biogenesis protein [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008284]
gi|323265459|gb|EGA48955.1| type IV pilin biogenesis protein [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008285]
gi|323271753|gb|EGA55171.1| type IV pilin biogenesis protein [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008287]
Length = 400
Score = 36.4 bits (83), Expect = 5.9, Method: Composition-based stats.
Identities = 25/148 (16%), Positives = 48/148 (32%), Gaps = 10/148 (6%)
Query: 181 RAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFE 240
+ +L + +GI Q L E +G S+ + E++ +A +
Sbjct: 261 QKLAQIFTVLALTQSAGIPFLQGLESAIESLG--CPYWSQRLTQVHQEIAAGNPVWLALK 318
Query: 241 NFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV 300
N L+++ S+ L L L A+ A+ L P L +
Sbjct: 319 N------TQEFSPLCLQLVRTGEASGSLDIMLHNLARHHSETTLALADNLASLLEPALLI 372
Query: 301 PMIIFFLPVLILVIIGPAILSIIDTMKD 328
+ ++V + I + D M
Sbjct: 373 ITGLII--GTLVVAMYLPIFHLGDAMSG 398
>gi|313835133|gb|EFS72847.1| type II secretion system F domain protein [Propionibacterium acnes
HL037PA2]
gi|314929111|gb|EFS92942.1| type II secretion system F domain protein [Propionibacterium acnes
HL044PA1]
gi|314970944|gb|EFT15042.1| type II secretion system F domain protein [Propionibacterium acnes
HL037PA3]
gi|328905819|gb|EGG25595.1| LOW QUALITY PROTEIN: type II secretion system F domain protein
[Propionibacterium sp. P08]
Length = 293
Score = 36.4 bits (83), Expect = 5.9, Method: Composition-based stats.
Identities = 23/139 (16%), Positives = 51/139 (36%), Gaps = 6/139 (4%)
Query: 179 IKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPL-SEEMLLTIAELSFLPNRQV 237
+ RA + L+ +G S+ A+R Q+ L + +A L + +
Sbjct: 103 VMRALERWVRLVSGSASTGKSVIDAIRAT----RRQAPELLVGPLTRVVARLDSRWDTRS 158
Query: 238 AFENFYNRTQMDCVRNATQA-LIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGP 296
A + F + A ++ ++R GT +L L + + E + P
Sbjct: 159 ALQGFADDLNSADADQVIAATMMAAERGGTGATTTLDALAASLQERIRAAREIRVERAKP 218
Query: 297 KLTVPMIIFFLPVLILVII 315
++ V + + V++ +
Sbjct: 219 RVVVRQVSIIIGVVLAGAL 237
>gi|114566084|ref|YP_753238.1| type II secretion system protein [Syntrophomonas wolfei subsp.
wolfei str. Goettingen]
gi|114337019|gb|ABI67867.1| type II secretion system protein [Syntrophomonas wolfei subsp.
wolfei str. Goettingen]
Length = 402
Score = 36.4 bits (83), Expect = 6.0, Method: Composition-based stats.
Identities = 25/135 (18%), Positives = 57/135 (42%), Gaps = 8/135 (5%)
Query: 191 LICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDC 250
L + +G SI +A + + + ++ L + +L ++ VA
Sbjct: 73 LAMLTAGFSIIKAFKVMGQK--NRNRTLKKALLKIHDDIEQGQALWVALSQHPK-----V 125
Query: 251 VRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVL 310
+ +I++ G ++ L+ L E+ + A+ KAAS+ P L + ++ +
Sbjct: 126 FSSIYINMIKAGEMGGTLETVLKNLSHHLEREQDINAKIKAASIYP-LIITLMALLVIFF 184
Query: 311 ILVIIGPAILSIIDT 325
I+ I PA +++ +
Sbjct: 185 IISFIMPAFVNVFAS 199
>gi|56412416|ref|YP_149491.1| type IV pilin biogenesis protein [Salmonella enterica subsp.
enterica serovar Paratyphi A str. ATCC 9150]
gi|197361352|ref|YP_002140987.1| type IV pilin biogenesis protein [Salmonella enterica subsp.
enterica serovar Paratyphi A str. AKU_12601]
gi|56126673|gb|AAV76179.1| protein transport protein HofC [Salmonella enterica subsp. enterica
serovar Paratyphi A str. ATCC 9150]
gi|197092827|emb|CAR58253.1| protein transport protein HofC [Salmonella enterica subsp. enterica
serovar Paratyphi A str. AKU_12601]
Length = 400
Score = 36.4 bits (83), Expect = 6.1, Method: Composition-based stats.
Identities = 24/149 (16%), Positives = 48/149 (32%), Gaps = 10/149 (6%)
Query: 180 KRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAF 239
+ +L + +GI Q L + +G S+ + E++ +A
Sbjct: 260 SQKLAQIFTVLALTQSAGIPFLQGLESAIDSLG--CPYWSQRLTQVHQEIAAGNPVWLAL 317
Query: 240 ENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLT 299
+N L+++ S+ L L L A+ A+ L P L
Sbjct: 318 KN------TQEFSPLCLQLVRTGEASGSLDIMLHNLARHHSETTLALADNLASLLEPALL 371
Query: 300 VPMIIFFLPVLILVIIGPAILSIIDTMKD 328
+ + ++V + I + D M
Sbjct: 372 IITGLII--GTLVVAMYLPIFHLGDAMSG 398
>gi|307595736|ref|YP_003902053.1| type II secretion system F domain-containing protein [Vulcanisaeta
distributa DSM 14429]
gi|307550937|gb|ADN51002.1| Type II secretion system F domain protein [Vulcanisaeta distributa
DSM 14429]
Length = 620
Score = 36.4 bits (83), Expect = 6.1, Method: Composition-based stats.
Identities = 34/210 (16%), Positives = 74/210 (35%), Gaps = 26/210 (12%)
Query: 110 EYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVG----------AVILIGYV 159
E L +L + ++ +I LGI+ I ++++ +I+IG V
Sbjct: 41 ERYLARVLFITTIMLVITAPLGILLITLNLNNALILLRMKLLFSTQYGIRDLVLIIIGVV 100
Query: 160 GFCAPSVWISNLVQK-RQS------SIKRAWPDALDLLLICVESGISIDQALRRVAE--- 209
P + ++ R + + P + + SG+S+ +A+ R+AE
Sbjct: 101 LIFMPLIVYEIMIGMPRITSSDLAFKVDTELPFFVAYVSAITNSGLSVFRAVERIAEAKI 160
Query: 210 -DIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSI 268
++ G+ + F + A N + + +R I + R G +
Sbjct: 161 LEVVGKVARWAYIRFKV-----FGEDPLTALSNVSSAIESRMLREFISGYITTVRTGGDV 215
Query: 269 GDSLRVLVSETRSERLMEAEKKAASLGPKL 298
+ + + S + + A LG +
Sbjct: 216 VHYINTRLHDIVSNAIERMNRAAEFLGMLM 245
>gi|237750672|ref|ZP_04581152.1| predicted protein [Helicobacter bilis ATCC 43879]
gi|229373762|gb|EEO24153.1| predicted protein [Helicobacter bilis ATCC 43879]
Length = 664
Score = 36.4 bits (83), Expect = 6.1, Method: Composition-based stats.
Identities = 15/68 (22%), Positives = 25/68 (36%), Gaps = 7/68 (10%)
Query: 198 ISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENF-----YNRTQMDCVR 252
+ + L V D G EE+ + E+ L R A + F T++ ++
Sbjct: 245 LRLLATLDYVNNDFQGDVNKFKEELKQALQEI--LDKRDEALKQFETIITALETEVKDIK 302
Query: 253 NATQALIQ 260
Q L Q
Sbjct: 303 AIMQTLTQ 310
>gi|226227974|ref|YP_002762080.1| type IV pilus assembly protein PilC [Gemmatimonas aurantiaca T-27]
gi|226091165|dbj|BAH39610.1| type IV pilus assembly protein PilC [Gemmatimonas aurantiaca T-27]
Length = 398
Score = 36.4 bits (83), Expect = 6.2, Method: Composition-based stats.
Identities = 20/147 (13%), Positives = 47/147 (31%), Gaps = 12/147 (8%)
Query: 180 KRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAF 239
R + +G+ + QAL +A+ ++ LS + + ++ A
Sbjct: 58 MRDIVIFTRQFSTMINAGLPLVQALDILAK--QSENKALSAVVRQVVFDVESGNTVADAM 115
Query: 240 ENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLT 299
+ ++ + G + L L + + K A +
Sbjct: 116 RKHPK-----AFSDLYTNMVAAGEAGGILDTILNRLAIFMEKNDALVRKVKGA-----MI 165
Query: 300 VPMIIFFLPVLILVIIGPAILSIIDTM 326
P +I + L +VI+ ++ + M
Sbjct: 166 YPTVIMCVAGLCVVILLWKVIPVFANM 192
>gi|213023574|ref|ZP_03338021.1| type IV pilin biogenesis protein [Salmonella enterica subsp.
enterica serovar Typhi str. 404ty]
Length = 149
Score = 36.4 bits (83), Expect = 6.2, Method: Composition-based stats.
Identities = 24/148 (16%), Positives = 48/148 (32%), Gaps = 10/148 (6%)
Query: 181 RAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFE 240
+ +L + +GI Q L + +G S+ + E++ +A +
Sbjct: 10 QKLAQIFTVLALTQSAGIPFLQGLESAIDSLG--CPYWSQRLTQVHQEIAAGNPVWLALK 67
Query: 241 NFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV 300
N L+++ S+ L L L A+ A+ L P L +
Sbjct: 68 N------TQEFSPLCLQLVRTGEASGSLDIMLHNLARHHSESTLALADNLASLLEPALLI 121
Query: 301 PMIIFFLPVLILVIIGPAILSIIDTMKD 328
+ ++V + I + D M
Sbjct: 122 ITGLII--GTLVVAMYLPIFHLGDAMSG 147
>gi|261339185|ref|ZP_05967043.1| hypothetical protein ENTCAN_05411 [Enterobacter cancerogenus ATCC
35316]
gi|288319032|gb|EFC57970.1| general secretion pathway protein F [Enterobacter cancerogenus ATCC
35316]
Length = 402
Score = 36.4 bits (83), Expect = 6.3, Method: Composition-based stats.
Identities = 24/148 (16%), Positives = 54/148 (36%), Gaps = 10/148 (6%)
Query: 183 WPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENF 242
L V + + ++ AL+ +++ + L+ ++ ++ AF F
Sbjct: 65 LSMFTRQLSTLVNAALPLESALKAISK--QTEDKKLAAMVVEIREKVVEGHTLFDAFSQF 122
Query: 243 YNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAE-KKAASLGPKLTVP 301
+ ++ ++ G +GD L L + M+++ +A LTV
Sbjct: 123 PRTFD----KLYCTLVMAGEKTG-HLGDVLEKLAEYNEQRQKMKSKLTQAMVYPITLTVV 177
Query: 302 MIIFFLPVLILVIIGPAILSIIDTMKDH 329
I ++LV + P ++ MK
Sbjct: 178 AIAVI--SILLVAVVPQVIEQFTHMKQQ 203
>gi|205351483|ref|YP_002225284.1| type IV pilin biogenesis protein [Salmonella enterica subsp.
enterica serovar Gallinarum str. 287/91]
gi|205271264|emb|CAR36052.1| protein transport protein HofC [Salmonella enterica subsp. enterica
serovar Gallinarum str. 287/91]
gi|326626510|gb|EGE32853.1| type IV pilin biogenesis protein [Salmonella enterica subsp.
enterica serovar Gallinarum str. 9]
Length = 400
Score = 36.4 bits (83), Expect = 6.3, Method: Composition-based stats.
Identities = 25/148 (16%), Positives = 48/148 (32%), Gaps = 10/148 (6%)
Query: 181 RAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFE 240
+ +L + +GI Q L E +G S+ + E++ +A +
Sbjct: 261 QKLAQIFTVLALTQSAGIPFLQGLESAIESLG--CPYWSQRLTQVHQEIAAGNPVWLALK 318
Query: 241 NFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV 300
N L+++ S+ L L L A+ A+ L P L +
Sbjct: 319 N------TQEFSPLCLQLVRTGEASGSLDIMLHNLARHHSESTLALADNLASLLEPALLI 372
Query: 301 PMIIFFLPVLILVIIGPAILSIIDTMKD 328
+ ++V + I + D M
Sbjct: 373 ITGLII--GTLVVAMYLPIFHLGDAMSG 398
>gi|218441093|ref|YP_002379422.1| type II secretion system protein [Cyanothece sp. PCC 7424]
gi|218173821|gb|ACK72554.1| type II secretion system protein [Cyanothece sp. PCC 7424]
Length = 404
Score = 36.4 bits (83), Expect = 6.4, Method: Composition-based stats.
Identities = 17/145 (11%), Positives = 49/145 (33%), Gaps = 14/145 (9%)
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
+ + +G++I + L +++ + L + + A++ A
Sbjct: 69 FSRQFSVMINAGVAIVRCLGVLSD--QSGNKKLKKALASISADVQQGSPLSDAMGKHP-- 124
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASL---GPKLTVPM 302
DC ++I++ G + + L L ++ + K+A + +
Sbjct: 125 ---DCFDQLYVSMIEAGETGGVLDEVLDRLAKLLEDMARLQNQIKSAMAYPVAVGMLAVI 181
Query: 303 IIFFLPVLILVIIGPAILSIIDTMK 327
+ F + + ++ P I +
Sbjct: 182 VFFAMTIFLI----PVFAKIFQDLG 202
>gi|209522190|ref|ZP_03270831.1| general secretion pathway protein F [Burkholderia sp. H160]
gi|209497381|gb|EDZ97595.1| general secretion pathway protein F [Burkholderia sp. H160]
Length = 405
Score = 36.4 bits (83), Expect = 6.5, Method: Composition-based stats.
Identities = 28/166 (16%), Positives = 60/166 (36%), Gaps = 16/166 (9%)
Query: 165 SVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLL 224
+ + + +R+ +I L + +G+ +D+AL + E + E M
Sbjct: 56 RLALGRRLSQREQAILTR------QLASLLIAGLPLDEALAVLTEQSERDY--IRELMAA 107
Query: 225 TIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERL 284
AE+ + A + +AL+ + + +G L L E+
Sbjct: 108 IRAEVLGGHSLANALQQHPK-----DFPEIYRALVAAGEHTGKLGLVLSRLADYI--EQR 160
Query: 285 MEAEKKAASLGPKLTVPMIIFFLPVLILV-IIGPAILSIIDTMKDH 329
++K T+ II F V L+ + P ++++ + K
Sbjct: 161 NALKQKIVLAFTYPTIVTIIAFGIVTFLLSYVVPQVVNVFASTKQQ 206
>gi|198245628|ref|YP_002214095.1| type IV pilin biogenesis protein [Salmonella enterica subsp.
enterica serovar Dublin str. CT_02021853]
gi|207855657|ref|YP_002242308.1| type IV pilin biogenesis protein [Salmonella enterica subsp.
enterica serovar Enteritidis str. P125109]
gi|197940144|gb|ACH77477.1| protein transport protein HofC [Salmonella enterica subsp. enterica
serovar Dublin str. CT_02021853]
gi|206707460|emb|CAR31734.1| protein transport protein HofC [Salmonella enterica subsp. enterica
serovar Enteritidis str. P125109]
gi|326621838|gb|EGE28183.1| protein transport protein HofC [Salmonella enterica subsp. enterica
serovar Dublin str. 3246]
Length = 400
Score = 36.4 bits (83), Expect = 6.5, Method: Composition-based stats.
Identities = 25/148 (16%), Positives = 48/148 (32%), Gaps = 10/148 (6%)
Query: 181 RAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFE 240
+ +L + +GI Q L E +G S+ + E++ +A +
Sbjct: 261 QKLAQIFTVLALTQSAGIPFLQGLESAIESLG--CPYWSQRLTQVHQEIAAGNPVWLALK 318
Query: 241 NFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV 300
N L+++ S+ L L L A+ A+ L P L +
Sbjct: 319 N------TQEFSPLCLQLVRTGEASGSLDIMLHNLARHHSESTLALADNLASLLEPALLI 372
Query: 301 PMIIFFLPVLILVIIGPAILSIIDTMKD 328
+ ++V + I + D M
Sbjct: 373 ITGLII--GTLVVAMYLPIFHLGDAMSG 398
>gi|161504730|ref|YP_001571842.1| type IV pilin biogenesis protein [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:-- str. RSK2980]
gi|160866077|gb|ABX22700.1| hypothetical protein SARI_02853 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:--]
Length = 400
Score = 36.4 bits (83), Expect = 6.5, Method: Composition-based stats.
Identities = 35/246 (14%), Positives = 69/246 (28%), Gaps = 36/246 (14%)
Query: 105 AGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAP 164
A + +L + ++ V+P I+ L + A +
Sbjct: 167 AIIMTMAALVVFAMLHFVLPE----FAAIYRSFNTPLPLLTRGIIAIAQWGSAWGWLILL 222
Query: 165 SVWISNLVQKR----------QSSIKRAWPDALDL------------LLICVESGISIDQ 202
I + R + + P L L + +GI Q
Sbjct: 223 LAVIGAIAHHRVKQKPSWQAQRQHLLLRLPVMGRLIRGQKLAQIFTVLALTQSAGIPFLQ 282
Query: 203 ALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSD 262
L + +G S+ + E++ +A +N L+++
Sbjct: 283 GLESTIDSLG--CPYWSQRLTQVHQEIAAGNPVWLALKN------TQEFSPLCLQLVRTG 334
Query: 263 RYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
S+ L L L A+ A+ L P L + + ++V + I +
Sbjct: 335 EASGSLDIMLHNLARHHSETTLALADNLASLLEPALLIITGLII--GTLVVAMYLPIFHL 392
Query: 323 IDTMKD 328
D M
Sbjct: 393 GDAMSG 398
>gi|312868318|ref|ZP_07728518.1| PTS system sucrose-specific IIBC component [Streptococcus
parasanguinis F0405]
gi|311096063|gb|EFQ54307.1| PTS system sucrose-specific IIBC component [Streptococcus
parasanguinis F0405]
Length = 630
Score = 36.4 bits (83), Expect = 6.6, Method: Composition-based stats.
Identities = 18/75 (24%), Positives = 33/75 (44%)
Query: 118 VVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQS 177
V +V+ ++ + + + E G V ++G G P+ I L K +
Sbjct: 175 AVGIVLGMMLVSGSLPNAWAVASGGEVTAMKFFGFVPVVGLQGSVLPAFIIGVLGAKFEK 234
Query: 178 SIKRAWPDALDLLLI 192
S+++ PD LDLL+
Sbjct: 235 SLRKVVPDVLDLLVT 249
>gi|240145311|ref|ZP_04743912.1| conserved hypothetical protein [Roseburia intestinalis L1-82]
gi|257202606|gb|EEV00891.1| conserved hypothetical protein [Roseburia intestinalis L1-82]
Length = 309
Score = 36.4 bits (83), Expect = 6.6, Method: Composition-based stats.
Identities = 26/187 (13%), Positives = 64/187 (34%), Gaps = 15/187 (8%)
Query: 103 RAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFC 162
A ++ + ++ ++F I + + L + ++
Sbjct: 65 VQAILKTTDREELFPLLCTASLLLFAAGAAIAVMIGNVFL----------IPVLACGFLF 114
Query: 163 APSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEM 222
P +I + + AL ++ + + L V E++ + P+
Sbjct: 115 LPFWYIRLTASHFKKDVSSELETALSIITTAY---LRSEDILTSVEENLEYLNPPVKTVF 171
Query: 223 LLTIAELSFL-PNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRS 281
++ + + P+ + A E + + D AL S Y S+ +L +V++
Sbjct: 172 ADFVSRIRLIDPDLEAALEELKGKIENDVFMEWVDALK-SCLYDRSLKTTLTPIVAKLSD 230
Query: 282 ERLMEAE 288
R++ AE
Sbjct: 231 MRIVNAE 237
>gi|32477705|ref|NP_870699.1| type IV fimbrial assembly protein PilC [Rhodopirellula baltica SH
1]
gi|32448259|emb|CAD77776.1| type IV fimbrial assembly protein PilC [Rhodopirellula baltica SH
1]
gi|327537902|gb|EGF24602.1| Type II secretion system F domain protein [Rhodopirellula baltica
WH47]
Length = 479
Score = 36.4 bits (83), Expect = 6.6, Method: Composition-based stats.
Identities = 21/142 (14%), Positives = 51/142 (35%), Gaps = 8/142 (5%)
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
L I ++G+ I ++L+ + + + L ++ E+ A
Sbjct: 75 FTRQLSILQDAGLPILRSLKIL--EGNQKPGKLKNALMDVCDEIEGGSTLSEA---MAKC 129
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
++ +I++ G ++ L L S ++ + K A + P + V ++
Sbjct: 130 PKV--FSRLYVNMIKAGEAGGALETILNRLADFLESAESLKRKVKGALIYP-VIVVLVAT 186
Query: 306 FLPVLILVIIGPAILSIIDTMK 327
+ I++ I P + D
Sbjct: 187 LILTFIMLFIVPTFEKMFDEFG 208
>gi|200387629|ref|ZP_03214241.1| protein transport protein HofC [Salmonella enterica subsp. enterica
serovar Virchow str. SL491]
gi|199604727|gb|EDZ03272.1| protein transport protein HofC [Salmonella enterica subsp. enterica
serovar Virchow str. SL491]
Length = 400
Score = 36.4 bits (83), Expect = 6.7, Method: Composition-based stats.
Identities = 25/148 (16%), Positives = 48/148 (32%), Gaps = 10/148 (6%)
Query: 181 RAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFE 240
+ +L + +GI Q L E +G S+ + E++ +A +
Sbjct: 261 QKLAQIFTVLALTQSAGIPFLQGLESAIESLG--CPYWSQRLTQVHQEIAAGNPVWLALK 318
Query: 241 NFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV 300
N L+++ S+ L L L A+ A+ L P L +
Sbjct: 319 N------TQEFSPLCLQLVRTGEASGSLDIMLHNLARHHSETTLALADNLASLLEPALLI 372
Query: 301 PMIIFFLPVLILVIIGPAILSIIDTMKD 328
+ ++V + I + D M
Sbjct: 373 ITGLII--GTLVVAMYLPIFHLGDAMSG 398
>gi|168230423|ref|ZP_02655481.1| protein transport protein HofC [Salmonella enterica subsp. enterica
serovar Kentucky str. CDC 191]
gi|194468768|ref|ZP_03074752.1| protein transport protein HofC [Salmonella enterica subsp. enterica
serovar Kentucky str. CVM29188]
gi|194455132|gb|EDX43971.1| protein transport protein HofC [Salmonella enterica subsp. enterica
serovar Kentucky str. CVM29188]
gi|205334971|gb|EDZ21735.1| protein transport protein HofC [Salmonella enterica subsp. enterica
serovar Kentucky str. CDC 191]
Length = 400
Score = 36.4 bits (83), Expect = 6.7, Method: Composition-based stats.
Identities = 25/148 (16%), Positives = 48/148 (32%), Gaps = 10/148 (6%)
Query: 181 RAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFE 240
+ +L + +GI Q L E +G S+ + E++ +A +
Sbjct: 261 QKLAQIFTVLALTQSAGIPFLQGLESAIESLG--CPYWSQRLTQVHQEIAAGNPVWLALK 318
Query: 241 NFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV 300
N L+++ S+ L L L A+ A+ L P L +
Sbjct: 319 N------TQEFSPLCLQLVRTGEASGSLDIMLHNLARHHSETTLALADNLASLLEPALLI 372
Query: 301 PMIIFFLPVLILVIIGPAILSIIDTMKD 328
+ ++V + I + D M
Sbjct: 373 ITGLII--GTLVVAMYLPIFHLGDAMSG 398
>gi|163781562|ref|ZP_02176562.1| fimbrial assembly protein PilC [Hydrogenivirga sp. 128-5-R1-1]
gi|159882782|gb|EDP76286.1| fimbrial assembly protein PilC [Hydrogenivirga sp. 128-5-R1-1]
Length = 415
Score = 36.4 bits (83), Expect = 6.7, Method: Composition-based stats.
Identities = 28/149 (18%), Positives = 48/149 (32%), Gaps = 12/149 (8%)
Query: 181 RAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFE 240
R L V +G+ I AL VAE + + L+E + E+S + A
Sbjct: 75 RDIALFCRQLGAMVNAGVGIIDALDIVAEQM--PNKKLAEAVAEVAKEVSEGMSMSEA-- 130
Query: 241 NFYNRTQM-DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLT 299
R + + + + G + +L E+L + K S
Sbjct: 131 -MSKRANIFPEL--VVNLVAVGEETG-ELDRALLRASEYY--EKLAMIKSKIKSAAFYPV 184
Query: 300 VPMIIFFLPVL-ILVIIGPAILSIIDTMK 327
++I + V IL + P I
Sbjct: 185 FVLVIATVIVTGILYFLVPTFAQIYSGFG 213
>gi|146304853|ref|YP_001192169.1| hypothetical protein Msed_2105 [Metallosphaera sedula DSM 5348]
gi|145703103|gb|ABP96245.1| hypothetical protein Msed_2105 [Metallosphaera sedula DSM 5348]
Length = 527
Score = 36.4 bits (83), Expect = 6.8, Method: Composition-based stats.
Identities = 39/210 (18%), Positives = 73/210 (34%), Gaps = 30/210 (14%)
Query: 122 VVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIG------------------YVGFCA 163
++ I L +I+++ +++G + L+G + F A
Sbjct: 262 ILLIPLLFAPLIYLWISVSQPNMGIHVKIGKLQLVGLLLSTALLALPFNLLLRVGITFLA 321
Query: 164 PSVWI--SNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEE 221
+ + S LV KR SI +P L + + G I +++R+ D G P +
Sbjct: 322 TQLILFPSYLVIKRDESILADFPTILREIGDFTKLGYGIRASIQRINFDELGLHKPTVKF 381
Query: 222 MLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRS 281
++ N ++ Q + V+ + L DR G L+ L S
Sbjct: 382 FDNVKKQIGMGNNI------YFGSIQNEQVKFIVELLNILDRKGGEGVRVLQELSDMIYS 435
Query: 282 ERLMEAEKKAASLGPKLTVPMIIFFLPVLI 311
L + + L T ++ PVL
Sbjct: 436 ITLSRTKLQ-RELS---TFNILALITPVLF 461
>gi|158312181|ref|YP_001504689.1| type II secretion system protein [Frankia sp. EAN1pec]
gi|158107586|gb|ABW09783.1| type II secretion system protein [Frankia sp. EAN1pec]
Length = 519
Score = 36.4 bits (83), Expect = 6.9, Method: Composition-based stats.
Identities = 16/84 (19%), Positives = 33/84 (39%)
Query: 244 NRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMI 303
R + V A+ +++ G + +L + R E A A G P+
Sbjct: 423 RRRETRVVTATAAAIGRTESSGAKLAATLTRIGDRARQEAHAAAIAAARRAGVLAVAPLG 482
Query: 304 IFFLPVLILVIIGPAILSIIDTMK 327
+ FLP +L+ + P ++ + +
Sbjct: 483 LCFLPAFLLLGVVPVVIGSVPDLG 506
>gi|332360613|gb|EGJ38423.1| PTS family sucrose porter, EIIBC component ScrA [Streptococcus
sanguinis SK1056]
Length = 654
Score = 36.4 bits (83), Expect = 6.9, Method: Composition-based stats.
Identities = 15/75 (20%), Positives = 33/75 (44%)
Query: 118 VVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQS 177
V +V+ ++ + + + E G + ++G G P+ I + K +
Sbjct: 175 AVGIVLGMMLVSGSLPNAWAVASGGEVTAMKFFGFIPVVGLQGSVLPAFIIGVVGAKFEK 234
Query: 178 SIKRAWPDALDLLLI 192
++++ PD LDLL+
Sbjct: 235 ALRKVVPDVLDLLVT 249
>gi|327461860|gb|EGF08191.1| PTS family sucrose porter, EIIBC component ScrA [Streptococcus
sanguinis SK1]
Length = 628
Score = 36.0 bits (82), Expect = 7.0, Method: Composition-based stats.
Identities = 15/75 (20%), Positives = 33/75 (44%)
Query: 118 VVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQS 177
V +V+ ++ + + + E G + ++G G P+ I + K +
Sbjct: 175 AVGIVLGMMLVSGSLPNAWAVASGGEVTAMKFFGFIPVVGLQGSVLPAFIIGVVGAKFEK 234
Query: 178 SIKRAWPDALDLLLI 192
++++ PD LDLL+
Sbjct: 235 ALRKVVPDVLDLLVT 249
>gi|194444325|ref|YP_002039374.1| type IV pilin biogenesis protein [Salmonella enterica subsp.
enterica serovar Newport str. SL254]
gi|194402988|gb|ACF63210.1| protein transport protein HofC [Salmonella enterica subsp. enterica
serovar Newport str. SL254]
Length = 400
Score = 36.0 bits (82), Expect = 7.0, Method: Composition-based stats.
Identities = 25/148 (16%), Positives = 48/148 (32%), Gaps = 10/148 (6%)
Query: 181 RAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFE 240
+ +L + +GI Q L E +G S+ + E++ +A +
Sbjct: 261 QKLAQIFTVLALTQSAGIPFLQGLESAIESLG--CPYWSQRLTQVHQEIAAGNPVWLALK 318
Query: 241 NFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV 300
N L+++ S+ L L L A+ A+ L P L +
Sbjct: 319 N------TQEFSPLCLQLVRTGEASGSLDIMLHNLARHHSETTLALADNLASLLEPALLI 372
Query: 301 PMIIFFLPVLILVIIGPAILSIIDTMKD 328
+ ++V + I + D M
Sbjct: 373 ITGLII--GTLVVAMYLPIFHLGDAMSG 398
>gi|325690385|gb|EGD32389.1| PTS family sucrose porter, EIIBC component ScrA [Streptococcus
sanguinis SK115]
Length = 654
Score = 36.0 bits (82), Expect = 7.0, Method: Composition-based stats.
Identities = 15/75 (20%), Positives = 33/75 (44%)
Query: 118 VVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQS 177
V +V+ ++ + + + E G + ++G G P+ I + K +
Sbjct: 175 AVGIVLGMMLVSGSLPNAWAVASGGEVTAMKFFGFIPVVGLQGSVLPAFIIGVVGAKFEK 234
Query: 178 SIKRAWPDALDLLLI 192
++++ PD LDLL+
Sbjct: 235 ALRKVVPDVLDLLVT 249
>gi|325696893|gb|EGD38780.1| PTS family sucrose porter, EIIBC component ScrA [Streptococcus
sanguinis SK160]
Length = 654
Score = 36.0 bits (82), Expect = 7.1, Method: Composition-based stats.
Identities = 15/75 (20%), Positives = 33/75 (44%)
Query: 118 VVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQS 177
V +V+ ++ + + + E G + ++G G P+ I + K +
Sbjct: 175 AVGIVLGMMLVSGSLPNAWAVASGGEVTAMKFFGFIPVVGLQGSVLPAFIIGVVGAKFEK 234
Query: 178 SIKRAWPDALDLLLI 192
++++ PD LDLL+
Sbjct: 235 ALRKVVPDVLDLLVT 249
>gi|196048264|ref|ZP_03115441.1| membrane protein, putative [Bacillus cereus 03BB108]
gi|196021001|gb|EDX59731.1| membrane protein, putative [Bacillus cereus 03BB108]
Length = 310
Score = 36.0 bits (82), Expect = 7.1, Method: Composition-based stats.
Identities = 22/194 (11%), Positives = 63/194 (32%), Gaps = 16/194 (8%)
Query: 125 IIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWP 184
+ + + I+ F + + ++ GF P + ++ +
Sbjct: 84 LSGMSIAAIFYFSFGRDP---------FTLISALCGFLVPRFLLYRRKKRYYLVVIDRLS 134
Query: 185 DALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYN 244
+ + ++ + A R + + + EE+ L AF+ F
Sbjct: 135 IYMKAVANALQIS---NNAKRVLVQVKPMMHESIQEEIEKVSLLLEGGTTMHRAFKGFNE 191
Query: 245 RTQMDCVRNATQALIQ-SDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVP-- 301
+ + L S G + L + + ++L A +++ +
Sbjct: 192 TFNFRELVFFHEMLEVCSREGGANSVQVLLDIAEDFEKQKLYLARLRSSLSQAQRAFVQN 251
Query: 302 -MIIFFLPVLILVI 314
+I+ +P++I+++
Sbjct: 252 CLIVIAMPIVIMLM 265
>gi|149193938|ref|ZP_01871036.1| msha biogenesis protein mshg [Caminibacter mediatlanticus TB-2]
gi|149135891|gb|EDM24369.1| msha biogenesis protein mshg [Caminibacter mediatlanticus TB-2]
Length = 415
Score = 36.0 bits (82), Expect = 7.1, Method: Composition-based stats.
Identities = 28/172 (16%), Positives = 66/172 (38%), Gaps = 18/172 (10%)
Query: 162 CAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEE 221
++++ +V+K+ ++ AL L + +++GIS+ AL + E+ PL +E
Sbjct: 55 LLKDIFLTRIVRKKLK--YPSYISALRQLSVLIKAGISLKDALEDIGENSAD---PLIKE 109
Query: 222 MLLTIAE-LSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIG---DSLRVLVS 277
+ L AE + + F + + A+++ + D L +
Sbjct: 110 VFLNAAEAIDSGKSLSDVFAEYEEYLG-----GLSLAMVRLGEKTGDLAMAIDYLAQIYE 164
Query: 278 ETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMKDH 329
R KA + +++ F V +++++ P +I +
Sbjct: 165 NMYENRRKMI--KALRYPIITLIAIVVAF--VFLILLVVPKFKAIFEQFHAQ 212
>gi|15899139|ref|NP_343744.1| hypothetical protein SSO2386 [Sulfolobus solfataricus P2]
gi|284173746|ref|ZP_06387715.1| hypothetical protein Ssol98_03698 [Sulfolobus solfataricus 98/2]
gi|13815688|gb|AAK42534.1| Conserved hypothetical protein [Sulfolobus solfataricus P2]
gi|261600888|gb|ACX90491.1| Type II secretion system F domain protein [Sulfolobus solfataricus
98/2]
Length = 616
Score = 36.0 bits (82), Expect = 7.1, Method: Composition-based stats.
Identities = 36/236 (15%), Positives = 82/236 (34%), Gaps = 20/236 (8%)
Query: 101 KLRAAGF-RSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVIL-IGY 158
K++ AG + L + L++ I+ ++ +++ + +L + A L +
Sbjct: 41 KMKKAGINQDPRLFASRLFLTLILSIVISVMLVVFAVRFFELYRLTLLTKYLAGFLTMMI 100
Query: 159 VGFCAPSVW-------ISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDI 211
G P + +S + R+ + P + + + SG+S +++
Sbjct: 101 FGIIIPPIAYLIQILQLSQSTENRRIGLDSEAPAFAAVFNVFLRSGLSARYVFDYLSKST 160
Query: 212 GGQSVPLSEEMLLTIAELSF-LPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGD 270
Q S+ + + + + A N + + + R G + +
Sbjct: 161 AMQYA--SQIASYVNKRVKYLGESVESAIVESLNYSPSKIFNEFLTTYVTAVRTGAPVLE 218
Query: 271 SLRVLVSETRSERLMEAEKKAASLG-------PKLTVPMIIFFLPVLILVIIGPAI 319
++ + A A +L L+ I FFL VL+L I P++
Sbjct: 219 TMEAKTKDILKNIETLASTAAENLSGIAEGFVIWLSSGFITFFL-VLLLQAIFPSL 273
>gi|301058210|ref|ZP_07199260.1| putative type IV fimbrial assembly protein PilC [delta
proteobacterium NaphS2]
gi|300447712|gb|EFK11427.1| putative type IV fimbrial assembly protein PilC [delta
proteobacterium NaphS2]
Length = 402
Score = 36.0 bits (82), Expect = 7.1, Method: Composition-based stats.
Identities = 17/149 (11%), Positives = 53/149 (35%), Gaps = 8/149 (5%)
Query: 180 KRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAF 239
+ +++G+ + Q L + E + ++ + + + ++ + +
Sbjct: 62 SKDLVIFTRQFSTMIDAGLPLVQGLTILTEQMENKT--FKKILKQVVTDVEGGASLAESL 119
Query: 240 ENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLT 299
+ + L+ + G + L+ L + + +++ K A P +
Sbjct: 120 QKHPKVFD-----SLFVNLVAAGEVGGILDTILQRLSTHIEKAQKLKSRIKGAMTYPAIV 174
Query: 300 VPMIIFFLPVLILVIIGPAILSIIDTMKD 328
V + I + V+++ +I P S+
Sbjct: 175 VAIAILVVSVIMIFVI-PVFESLFRDFGS 202
>gi|330900576|gb|EGH31995.1| type II secretion system protein [Pseudomonas syringae pv. japonica
str. M301072PT]
Length = 231
Score = 36.0 bits (82), Expect = 7.2, Method: Composition-based stats.
Identities = 23/146 (15%), Positives = 51/146 (34%), Gaps = 8/146 (5%)
Query: 182 AWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFEN 241
A L + +G ++++L + + G E ++ VA E
Sbjct: 63 ALVSFTQQLATLLGAGQPLERSLGILLKQPGQPQTKALIE--RIREQVKAGKPLSVALEE 120
Query: 242 FYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVP 301
+ +++++ G ++ +LR L +L+ E A + P V
Sbjct: 121 -----EGSQFSPLYISMVRAGEAGGALESTLRQLSDYLERSQLLRGEVINALIYPAFLVV 175
Query: 302 MIIFFLPVLILVIIGPAILSIIDTMK 327
++ L L+L + P + I +
Sbjct: 176 GVLGSL-ALLLAYVVPQFVPIFKDLG 200
>gi|268556672|ref|XP_002636325.1| Hypothetical protein CBG08618 [Caenorhabditis briggsae]
Length = 381
Score = 36.0 bits (82), Expect = 7.2, Method: Composition-based stats.
Identities = 18/67 (26%), Positives = 31/67 (46%)
Query: 43 KRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKL 102
KR K+ ER + RKQ+ ++ K AS +L + V++ + + +E + L
Sbjct: 262 KRRKTQLKERRLRRKQREMAMMKRRASKKLPLSRIQDDPRVVRRSPIGKVTFNEKMFQLL 321
Query: 103 RAAGFRS 109
G RS
Sbjct: 322 EEYGIRS 328
>gi|330890704|gb|EGH23365.1| type IV pilus biogenesis protein PilC [Pseudomonas syringae pv.
mori str. 301020]
Length = 406
Score = 36.0 bits (82), Expect = 7.3, Method: Composition-based stats.
Identities = 25/149 (16%), Positives = 55/149 (36%), Gaps = 10/149 (6%)
Query: 182 AWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFEN 241
+ +++G+ + Q+ +AE G ++ + + E+S + A
Sbjct: 67 DIAFFSRQMATMMKAGVPLLQSFDIIAE--GAENPNMRALVGSLKQEVSAGNSFATALRQ 124
Query: 242 FYNRTQMDCVRNATQALIQSDRYGTSIGDSL-RVLVSETRSERLMEAEKKAASLGPKLTV 300
D N A Q+ ++ L RV + ++ERL KKA + + +
Sbjct: 125 KPEYFD-DLFCNLVDAGEQA----GALESLLDRVASYKEKTERLKAKIKKAMTYPTAVLI 179
Query: 301 PMIIFFLPVLILVIIGPAILSIIDTMKDH 329
+ F + ++L+ + P S+
Sbjct: 180 --VAFIVSGILLIKVVPQFQSVFAGFNAE 206
>gi|190015191|ref|YP_001966619.1| conserved hypothetical protein [Bacillus cereus]
gi|190015456|ref|YP_001966945.1| hypothetical protein pPER272_0074 [Bacillus cereus]
gi|190015631|ref|YP_001967247.1| hypothetical protein BcAH187_pCER270_0104 [Bacillus cereus]
gi|217956757|ref|YP_002335851.1| hypothetical protein BCAH187_C0115 [Bacillus cereus AH187]
gi|218848445|ref|YP_002454971.1| hypothetical protein BCAH820_B0087 [Bacillus cereus AH820]
gi|116584538|gb|ABK00655.1| putative membrane protein [Bacillus cereus]
gi|116584867|gb|ABK00982.1| conserved hypothetical protein [Bacillus cereus]
gi|116585137|gb|ABK01246.1| conserved hypothetical protein [Bacillus cereus]
gi|217068585|gb|ACJ82833.1| putative membrane protein [Bacillus cereus AH187]
gi|218540496|gb|ACK92892.1| membrane protein, putative [Bacillus cereus AH820]
Length = 310
Score = 36.0 bits (82), Expect = 7.3, Method: Composition-based stats.
Identities = 22/194 (11%), Positives = 63/194 (32%), Gaps = 16/194 (8%)
Query: 125 IIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWP 184
+ + + I+ F + + ++ GF P + ++ +
Sbjct: 84 LSGMSIAAIFYFSFGRDP---------FTLISALCGFLVPRFLLYRRKKRYYLVVIDRLS 134
Query: 185 DALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYN 244
+ + ++ + A R + + + EE+ L AF+ F
Sbjct: 135 IYMKAVANALQIS---NNAKRVLVQVKPMMHESIQEEIEKVSLLLEGGTTMHRAFKGFNE 191
Query: 245 RTQMDCVRNATQALIQ-SDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVP-- 301
+ + L S G + L + + ++L A +++ +
Sbjct: 192 TFNFRELVFFHEMLEVCSREGGANSVQVLLDIAEDFEKQKLYLARLRSSLSQAQRAFVQN 251
Query: 302 -MIIFFLPVLILVI 314
+I+ +P++I+++
Sbjct: 252 CLIVIAMPIVIMLM 265
>gi|169347023|ref|ZP_02865965.1| bacterial type II secretion system protein F [Clostridium
perfringens C str. JGS1495]
gi|169296706|gb|EDS78835.1| bacterial type II secretion system protein F [Clostridium
perfringens C str. JGS1495]
Length = 401
Score = 36.0 bits (82), Expect = 7.4, Method: Composition-based stats.
Identities = 22/145 (15%), Positives = 52/145 (35%), Gaps = 8/145 (5%)
Query: 180 KRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAF 239
+ + ++SG+SI +AL + E L E ++ EL +
Sbjct: 61 LKDIAVFCRQFYVMLDSGLSIGKALNILIEQCEK--PKLREALIGVNGELKRGETLASS- 117
Query: 240 ENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLT 299
R + N ++I + ++ L+ + E + + K+A + P +
Sbjct: 118 --MRKRKDV--FPNLLTSMIDAGERSGNLDIILKRMADYYEKETKIRGKIKSAMIYP-IV 172
Query: 300 VPMIIFFLPVLILVIIGPAILSIID 324
+ ++ IL + P + + +
Sbjct: 173 LGVVAIIAITFILTFVMPTFVQMFE 197
>gi|322392333|ref|ZP_08065794.1| PTS family beta-glucosides porter, IIABC component [Streptococcus
peroris ATCC 700780]
gi|321144868|gb|EFX40268.1| PTS family beta-glucosides porter, IIABC component [Streptococcus
peroris ATCC 700780]
Length = 631
Score = 36.0 bits (82), Expect = 7.5, Method: Composition-based stats.
Identities = 15/75 (20%), Positives = 33/75 (44%)
Query: 118 VVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQS 177
V +V+ ++ + + + E G + ++G G P+ I + K +
Sbjct: 175 AVGIVLGMMLVSGSLPNAWAVASGGEVTAMNFFGFIPVVGLQGSVLPAFIIGVVGAKFEK 234
Query: 178 SIKRAWPDALDLLLI 192
++++ PD LDLL+
Sbjct: 235 AVRKVVPDVLDLLVT 249
>gi|289663712|ref|ZP_06485293.1| general secretion pathway protein F [Xanthomonas campestris pv.
vasculorum NCPPB702]
gi|289668614|ref|ZP_06489689.1| general secretion pathway protein F [Xanthomonas campestris pv.
musacearum NCPPB4381]
Length = 405
Score = 36.0 bits (82), Expect = 7.5, Method: Composition-based stats.
Identities = 20/149 (13%), Positives = 51/149 (34%), Gaps = 12/149 (8%)
Query: 180 KRAWPDALDLLLICVESGISIDQALRRVAE--DIGGQSVPLSEEMLLTIAELSFLPNRQV 237
A L + +G +D+AL + + + + + +
Sbjct: 65 NAALVQFTQQLATLIGAGQPLDRALSILMDLPEDEKSRRVIGD----VRDTVRGGAPLSS 120
Query: 238 AFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPK 297
A E Q ++++ G S+ D+L+ L R + + A + P
Sbjct: 121 ALER-----QHGLFSKLYINMVRAGEAGGSMQDTLQRLADYLERSRALRGKVINALIYPA 175
Query: 298 LTVPMIIFFLPVLILVIIGPAILSIIDTM 326
+ + ++ L L+ ++ P + +++
Sbjct: 176 ILLAVVGCALLFLLGYVV-PQFAQMYESL 203
>gi|46198748|ref|YP_004415.1| pili assembly protein pilC [Thermus thermophilus HB27]
gi|17226361|gb|AAL37752.1|AF436068_1 competence protein PilC [Thermus thermophilus HB27]
gi|46196371|gb|AAS80788.1| pili assembly protein pilC [Thermus thermophilus HB27]
Length = 441
Score = 36.0 bits (82), Expect = 7.6, Method: Composition-based stats.
Identities = 21/154 (13%), Positives = 48/154 (31%), Gaps = 17/154 (11%)
Query: 180 KRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAF 239
+ L + +G+++ QAL + + ++ E + ++ A
Sbjct: 99 LKDLAIFSRQLATMLGAGLTLLQALAIL--ERQTENRKFREILKQVRTDVEGGMAFSEAL 156
Query: 240 ENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLT 299
++ L+++ + L L S E + + +T
Sbjct: 157 ------SKHKIFSRLYVNLVRAGETSGGLDLILDRLASFLEKELELR-----GKIRSAMT 205
Query: 300 VPMIIFFLPV----LILVIIGPAILSIIDTMKDH 329
P+I+F V +L I P I+ +
Sbjct: 206 YPVIVFVFAVGVAYFLLTGIVPQFAQILTDLGSE 239
>gi|315612669|ref|ZP_07887581.1| PTS family beta-glucosides porter, IIABC component [Streptococcus
sanguinis ATCC 49296]
gi|315315256|gb|EFU63296.1| PTS family beta-glucosides porter, IIABC component [Streptococcus
sanguinis ATCC 49296]
Length = 628
Score = 36.0 bits (82), Expect = 7.7, Method: Composition-based stats.
Identities = 15/75 (20%), Positives = 33/75 (44%)
Query: 118 VVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQS 177
V +V+ ++ + + + E G + ++G G P+ I + K +
Sbjct: 175 AVGIVLGMMLVSGSLPNAWAVASGGEVTAMNFFGFIPVVGLQGSVLPAFIIGVVGAKFEK 234
Query: 178 SIKRAWPDALDLLLI 192
++++ PD LDLL+
Sbjct: 235 ALRKVVPDVLDLLVT 249
>gi|75906599|ref|YP_320895.1| type II secretion system protein [Anabaena variabilis ATCC 29413]
gi|75700324|gb|ABA20000.1| type II secretion system protein [Anabaena variabilis ATCC 29413]
Length = 407
Score = 36.0 bits (82), Expect = 7.8, Method: Composition-based stats.
Identities = 23/152 (15%), Positives = 47/152 (30%), Gaps = 12/152 (7%)
Query: 162 CAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEE 221
A + + + L V +G++I + L + + + L +
Sbjct: 48 FAANFDLQKFQNSFVKVTVKEKAVFSRQLATLVNAGVAIVRGLGVLGDQC--TNAKLKQA 105
Query: 222 MLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRS 281
+ ++ N A R DC ++IQ+ G + + L L
Sbjct: 106 LNDISNDVQSGVNLSDAM-----RKHPDCFDGLYVSMIQAGEVGGVLDEVLNRLAKLLED 160
Query: 282 ERLMEAEKKAASLGPKLTVPMIIFFLPVLILV 313
++ L L P+++ L I V
Sbjct: 161 MARLQ-----NQLKSALAYPVVVGILATAIFV 187
>gi|222832288|gb|EEE70765.1| predicted protein [Populus trichocarpa]
Length = 225
Score = 36.0 bits (82), Expect = 7.8, Method: Composition-based stats.
Identities = 24/124 (19%), Positives = 49/124 (39%), Gaps = 9/124 (7%)
Query: 190 LLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMD 249
+ V SG+ I++AL ++E+ + AE++ A
Sbjct: 1 MAGLVGSGLPIERALAALSEE--ADDPRQHHLVAALRAEVNAGSTFARALAQHPR----- 53
Query: 250 CVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPV 309
+ A+I + S+G L L + S + ++++ A+L P + ++ + V
Sbjct: 54 EFSDIYCAVIGAGEASGSLGPVLERLADDLESRQALQSKLIGAALYPA--IVTLVAIVIV 111
Query: 310 LILV 313
L LV
Sbjct: 112 LFLV 115
>gi|306829024|ref|ZP_07462215.1| PTS family beta-glucosides porter, IIABC component [Streptococcus
mitis ATCC 6249]
gi|304428829|gb|EFM31918.1| PTS family beta-glucosides porter, IIABC component [Streptococcus
mitis ATCC 6249]
Length = 628
Score = 36.0 bits (82), Expect = 7.9, Method: Composition-based stats.
Identities = 15/75 (20%), Positives = 33/75 (44%)
Query: 118 VVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQS 177
V +V+ ++ + + + E G + ++G G P+ I + K +
Sbjct: 175 AVGIVLGMMLVSGSLPNAWAVASGGEVTAMNFFGFIPVVGLQGSVLPAFIIGVVGAKFEK 234
Query: 178 SIKRAWPDALDLLLI 192
++++ PD LDLL+
Sbjct: 235 ALRKVVPDVLDLLVT 249
>gi|55378880|ref|YP_136730.1| flagellar assembly protein J [Haloarcula marismortui ATCC 43049]
gi|55231605|gb|AAV47024.1| flagella accessory protein J [Haloarcula marismortui ATCC 43049]
Length = 582
Score = 36.0 bits (82), Expect = 7.9, Method: Composition-based stats.
Identities = 32/234 (13%), Positives = 79/234 (33%), Gaps = 10/234 (4%)
Query: 96 ENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVIL 155
+ L + + L L + L+ + F I+ + ++ + + + ++
Sbjct: 15 SETIQSLVESYRQMTIPLERYLFLILLPAVGFFIISTVVALLLEQPIAVRAPIPLLGFLV 74
Query: 156 IGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQS 215
+ F P + +S +R+ + + + + + + I + R +AE+ +
Sbjct: 75 MASAIFY-PKILLS----QRKRELNNRFHLLITHMTVLATTKIDRMEVFRTLAEE--DEY 127
Query: 216 VPLSEEMLLTIAELS-FLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRV 274
L+ EM + + + + A + V + L + G + D L
Sbjct: 128 GELAMEMHRIVQLVDTWNLSLDDACRRRAKQVPSRAVSDFFDRLAYTLGAGQGLDDYLLT 187
Query: 275 LVSETRSERLMEAEKKAASLGPK--LTVPMIIFFLPVLILVIIGPAILSIIDTM 326
+ + SL L + MI+ L+ ++ P + TM
Sbjct: 188 EQEQIIQHYSTVYKSSLDSLEVMKDLYLSMILSMTFALVFAVVLPVLTGTNPTM 241
>gi|238911200|ref|ZP_04655037.1| type IV pilin biogenesis protein [Salmonella enterica subsp.
enterica serovar Tennessee str. CDC07-0191]
Length = 400
Score = 36.0 bits (82), Expect = 8.0, Method: Composition-based stats.
Identities = 25/148 (16%), Positives = 48/148 (32%), Gaps = 10/148 (6%)
Query: 181 RAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFE 240
+ +L + +GI Q L E +G S+ + E++ +A +
Sbjct: 261 QKLAQIFTVLALTQSAGIPFLQGLESAIESLG--CPYWSQRLTQVHQEIAAGNPVWLALK 318
Query: 241 NFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV 300
N L+++ S+ L L L A+ A+ L P L +
Sbjct: 319 N------TQEFSPLCLQLVRTGEASGSLDIMLHNLARHHSETTLALADNLASLLEPALLI 372
Query: 301 PMIIFFLPVLILVIIGPAILSIIDTMKD 328
+ ++V + I + D M
Sbjct: 373 ITGLII--GTLVVAMYLPIFHLGDAMSG 398
>gi|331266895|ref|YP_004326525.1| PTS system, IIABC component [Streptococcus oralis Uo5]
gi|326683567|emb|CBZ01185.1| PTS system, IIABC component [Streptococcus oralis Uo5]
Length = 628
Score = 36.0 bits (82), Expect = 8.0, Method: Composition-based stats.
Identities = 15/75 (20%), Positives = 33/75 (44%)
Query: 118 VVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQS 177
V +V+ ++ + + + E G + ++G G P+ I + K +
Sbjct: 175 AVGIVLGMMLVSGSLPNAWAVASGGEVTAMNFFGFIPVVGLQGSVLPAFIIGVVGAKFEK 234
Query: 178 SIKRAWPDALDLLLI 192
++++ PD LDLL+
Sbjct: 235 ALRKVVPDVLDLLVT 249
>gi|229824690|ref|ZP_04450759.1| hypothetical protein GCWU000182_00038 [Abiotrophia defectiva ATCC
49176]
gi|229791019|gb|EEP27133.1| hypothetical protein GCWU000182_00038 [Abiotrophia defectiva ATCC
49176]
Length = 404
Score = 36.0 bits (82), Expect = 8.1, Method: Composition-based stats.
Identities = 38/216 (17%), Positives = 72/216 (33%), Gaps = 26/216 (12%)
Query: 113 LNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLV 172
L+ ++ + + I LI I++I Y K + I G + P I N
Sbjct: 214 LSDFIIAKWYLIIAVLIAFIVFIAVYKK--------TISGQIFFGTIARKLPVFGIIN-- 263
Query: 173 QKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFL 232
IK A L V +G+ + +AL A + + + E+
Sbjct: 264 ------IKNAASSFARTLSTLVYAGLPMVEALEITANTMDNYVYKQC--LKIVKDEVVKG 315
Query: 233 PNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAA 292
+N + + + L L E M + A
Sbjct: 316 VPMSEPIQN------SKLFPPMVGYMTKIGEETGDVEGMLSRLADYYDEEVEMATQTLMA 369
Query: 293 SLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMKD 328
+L P + + + + +LI VI+GP ++S+ + +
Sbjct: 370 ALEPFIMMVL-AGIVIMLISVIMGP-MISMYGALDN 403
>gi|21226418|ref|NP_632340.1| flagellar assembly protein J [Methanosarcina mazei Go1]
gi|20904677|gb|AAM30012.1| flagella related protein FlaJ [Methanosarcina mazei Go1]
Length = 541
Score = 36.0 bits (82), Expect = 8.2, Method: Composition-based stats.
Identities = 25/171 (14%), Positives = 65/171 (38%), Gaps = 7/171 (4%)
Query: 146 FQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLL-LICVESGISIDQAL 204
F + + V +I P + ++ + ++ + L I SG+++ +AL
Sbjct: 258 FFIDIKGVGMIVAGVTMIPVGIAAKRDIEKINKRDESYTTFIRSLGSIISGSGLTVPKAL 317
Query: 205 RRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRY 264
++ G+ +S+E+ +A + + + F T + T + + +
Sbjct: 318 LKIDPKNLGELKDMSQELYKKLA---SGLDPALCWGRFVGETGSYLIYKFTSVFVDAVNF 374
Query: 265 GTSIGDSLRVL--VSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILV 313
G + + + L S L ++ A L +P+ + + +L+ +
Sbjct: 375 GGN-AEVVGELVSSSNLELVLLRMKRERIAKGFSSLVIPLHVSMVGLLLFI 424
>gi|296875882|ref|ZP_06899943.1| PTS family beta-glucosides porter, IIABC component [Streptococcus
parasanguinis ATCC 15912]
gi|296433123|gb|EFH18909.1| PTS family beta-glucosides porter, IIABC component [Streptococcus
parasanguinis ATCC 15912]
Length = 630
Score = 36.0 bits (82), Expect = 8.2, Method: Composition-based stats.
Identities = 17/75 (22%), Positives = 33/75 (44%)
Query: 118 VVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQS 177
V +V+ ++ + + + E G + ++G G P+ I L K +
Sbjct: 175 AVGIVLGMMLVSGSLPNAWAVASGGEVTAMKFFGFIPVVGLQGSVLPAFIIGVLGAKFEK 234
Query: 178 SIKRAWPDALDLLLI 192
S+++ PD LDLL+
Sbjct: 235 SLRKVVPDVLDLLVT 249
>gi|209696320|ref|YP_002264251.1| general secretion pathway protein F [Aliivibrio salmonicida
LFI1238]
gi|208010274|emb|CAQ80606.1| general secretion pathway protein F [Aliivibrio salmonicida
LFI1238]
Length = 405
Score = 36.0 bits (82), Expect = 8.2, Method: Composition-based stats.
Identities = 19/148 (12%), Positives = 53/148 (35%), Gaps = 13/148 (8%)
Query: 180 KRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAF 239
L V++G+ +++ L+ VAE G+ + M+ +++ +F
Sbjct: 65 VNDLSLITRQLATLVQAGMPLEECLKAVAE--QGEKPHIRSMMMGVRSKVIEGYPLAESF 122
Query: 240 ENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLT 299
+ + + ++ G + L L + + M + L +
Sbjct: 123 GGYPHVFD----DLFCSMVAAGEKSG-HLDTVLNRLADYAENRQKMR-----SKLQQAMI 172
Query: 300 VPMIIFFLPVLIL-VIIGPAILSIIDTM 326
P+++ + V ++ ++ + I+D
Sbjct: 173 YPIMLTLIAVAVISFLLATVVPKIVDQF 200
>gi|229578001|ref|YP_002836399.1| type II secretion system protein [Sulfolobus islandicus Y.G.57.14]
gi|228008715|gb|ACP44477.1| type II secretion system protein [Sulfolobus islandicus Y.G.57.14]
Length = 616
Score = 36.0 bits (82), Expect = 8.3, Method: Composition-based stats.
Identities = 35/241 (14%), Positives = 83/241 (34%), Gaps = 20/241 (8%)
Query: 96 ENIVNKLRAAGFRSE---YSLNILLVVRLVVPIIFLILGI------IWIFGYDKLLEYPF 146
+++ K++ AG + ++ + L + L + I L++ ++ F
Sbjct: 36 KSVDMKIKKAGISQDPRLFASRLFLALILSIAISALLIAFSIRFFELYRLTLLTKYLAGF 95
Query: 147 QLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRR 206
+ ++I V + + +S + R+ + P + + + SG+S
Sbjct: 96 LTLIIFGVIIPAVVYLMQILQLSQSTENRRIGLDSEAPAFAAVFNVFLRSGLSARYVFDY 155
Query: 207 VAEDIGGQSVPLSEEMLLTIAELSF-LPNRQVAFENFYNRTQMDCVRNATQALIQSDRYG 265
+++ + S+ + + + A N + + + R G
Sbjct: 156 LSKSTAMRYA--SQIASYVNKRVKYLGEGVESAIVESLNYSPSKVFNEFLITYVTAVRTG 213
Query: 266 TSIGDSLRVLVSETRSERLMEAEKKAASLG-------PKLTVPMIIFFLPVLILVIIGPA 318
+ D++ + A A +L L+ I FFL VL+L I P+
Sbjct: 214 APVLDTMEAKTKDILKNIETLASTAAENLSGIAEGFVIWLSSGFITFFL-VLLLQAIFPS 272
Query: 319 I 319
+
Sbjct: 273 L 273
>gi|168820862|ref|ZP_02832862.1| protein transport protein HofC [Salmonella enterica subsp. enterica
serovar Weltevreden str. HI_N05-537]
gi|205342429|gb|EDZ29193.1| protein transport protein HofC [Salmonella enterica subsp. enterica
serovar Weltevreden str. HI_N05-537]
gi|320084388|emb|CBY94181.1| General secretion pathway protein F Cholera toxin secretion protein
epsF [Salmonella enterica subsp. enterica serovar
Weltevreden str. 2007-60-3289-1]
Length = 400
Score = 36.0 bits (82), Expect = 8.3, Method: Composition-based stats.
Identities = 24/148 (16%), Positives = 48/148 (32%), Gaps = 10/148 (6%)
Query: 181 RAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFE 240
+ +L + +GI Q L + +G S+ + E++ +A +
Sbjct: 261 QKLAQIFTVLALTQSAGIPFLQGLESAIDSLG--CPYWSQRLTQVHQEIAAGNPVWLALK 318
Query: 241 NFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV 300
N L+++ S+ L L L A+ A+ L P L +
Sbjct: 319 N------TQEFSPLCLQLVRTGEASGSLDIMLHNLARHHSETTLALADNLASLLEPALLI 372
Query: 301 PMIIFFLPVLILVIIGPAILSIIDTMKD 328
+ ++V + I + D M
Sbjct: 373 ITGLII--GTLVVAMYLPIFHLGDAMSG 398
>gi|309798754|ref|ZP_07693018.1| PTS system, glucose subfamily, IIAC component [Streptococcus
infantis SK1302]
gi|308117571|gb|EFO54983.1| PTS system, glucose subfamily, IIAC component [Streptococcus
infantis SK1302]
Length = 491
Score = 36.0 bits (82), Expect = 8.4, Method: Composition-based stats.
Identities = 15/75 (20%), Positives = 33/75 (44%)
Query: 118 VVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQS 177
V +V+ ++ + + + E G + ++G G P+ I + K +
Sbjct: 39 AVGIVLGMMLVSGSLPNAWAVASGGEVTAMNFFGFIPVVGLQGSVLPAFIIGVVGAKFEK 98
Query: 178 SIKRAWPDALDLLLI 192
++++ PD LDLL+
Sbjct: 99 AVRKVVPDVLDLLVT 113
>gi|197262922|ref|ZP_03162996.1| protein transport protein HofC [Salmonella enterica subsp. enterica
serovar Saintpaul str. SARA23]
gi|197241177|gb|EDY23797.1| protein transport protein HofC [Salmonella enterica subsp. enterica
serovar Saintpaul str. SARA23]
Length = 400
Score = 36.0 bits (82), Expect = 8.4, Method: Composition-based stats.
Identities = 24/148 (16%), Positives = 48/148 (32%), Gaps = 10/148 (6%)
Query: 181 RAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFE 240
+ +L + +GI Q L + +G S+ + E++ +A +
Sbjct: 261 QKLAQIFTVLALTQSAGIPFLQGLESAIDSLG--CPYWSQRLTQVHQEIAAGNPVWLALK 318
Query: 241 NFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV 300
N L+++ S+ L L L A+ A+ L P L +
Sbjct: 319 N------TQEFSPLCLQLVRTGEASGSLDIMLHNLARHHSETTLALADNLASLLEPALLI 372
Query: 301 PMIIFFLPVLILVIIGPAILSIIDTMKD 328
+ ++V + I + D M
Sbjct: 373 ITGLII--GTLVVAMYLPIFHLGDAMSG 398
>gi|83589193|ref|YP_429202.1| hypothetical protein Moth_0325 [Moorella thermoacetica ATCC 39073]
gi|83572107|gb|ABC18659.1| hypothetical protein Moth_0325 [Moorella thermoacetica ATCC 39073]
Length = 261
Score = 36.0 bits (82), Expect = 8.4, Method: Composition-based stats.
Identities = 29/190 (15%), Positives = 62/190 (32%), Gaps = 12/190 (6%)
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
+ + L P V AV G+ P + +R+ +++ D +
Sbjct: 39 AVGAAVMFMAGSILCGTPLGGVVWAVP-----GWFIPGWLMKMRENRRKERLRQVAKDII 93
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVPLSEEML--LTIAELSFLPNRQVAFENFYNR 245
+ + + ++ +AE I PL E+ EL+ +
Sbjct: 94 VAAGGMFSANLMTGEVIKTLAERI---PAPLGRELADIKARRELNSYNTYPQLLNGLAEK 150
Query: 246 TQMDCVR--NATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMI 303
+ ++ A A + + L+ L + R + E+K A+ +L ++
Sbjct: 151 YDLMEIKAMAAVLAAAERAGGPAAAAKGLKRLGAALRLRDRLIQERKVATYESRLAAVVV 210
Query: 304 IFFLPVLILV 313
I L +L
Sbjct: 211 IMILAAGLLF 220
>gi|44004390|ref|NP_982058.1| membrane protein, putative [Bacillus cereus ATCC 10987]
gi|42741456|gb|AAS44901.1| conserved membrane protein, putative [Bacillus cereus ATCC 10987]
Length = 310
Score = 36.0 bits (82), Expect = 8.4, Method: Composition-based stats.
Identities = 22/194 (11%), Positives = 63/194 (32%), Gaps = 16/194 (8%)
Query: 125 IIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWP 184
+ + + I+ F + + ++ GF P + ++ +
Sbjct: 84 LSGMSIAAIFYFSFGRDP---------FTLISALCGFLVPRFLLYRRKKRYYLVVIDRLS 134
Query: 185 DALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYN 244
+ + ++ + A R + + + EE+ L AF+ F
Sbjct: 135 IYMKAVANALQIS---NNAKRVLVQVKPMMHESIQEEIEKVSLLLEGGTTMHRAFKGFNE 191
Query: 245 RTQMDCVRNATQALIQ-SDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVP-- 301
+ + L S G + L + + ++L A +++ +
Sbjct: 192 TFNFRELVFFHEMLEVCSREGGANSVQVLLDIAEDFEKQKLYLARLRSSLSQAQRAFVQN 251
Query: 302 -MIIFFLPVLILVI 314
+I+ +P++I+++
Sbjct: 252 CLIVIAMPIVIMLM 265
>gi|313672382|ref|YP_004050493.1| type ii secretion system f domain [Calditerrivibrio nitroreducens
DSM 19672]
gi|312939138|gb|ADR18330.1| Type II secretion system F domain [Calditerrivibrio nitroreducens
DSM 19672]
Length = 407
Score = 36.0 bits (82), Expect = 8.6, Method: Composition-based stats.
Identities = 27/162 (16%), Positives = 56/162 (34%), Gaps = 8/162 (4%)
Query: 168 ISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIA 227
+S ++K + +GI I LRR+ + S + E + I
Sbjct: 54 LSQKLKKYEKVRLEELIVFTRQFASLFAAGIPILTILRRL--ESQNYSQKMKETISTIIK 111
Query: 228 ELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEA 287
++ +AF R D + +++ G + L+ L ++
Sbjct: 112 DIEAGTPLSIAF-----RKHKDIFSDLYINMLRVGEEGGVLDIVLQRLALILETDLDTRN 166
Query: 288 EKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMKDH 329
+ K A+ PK+ V I+ +L+ +I P + +
Sbjct: 167 KIKNATRYPKMVVSAIVIAFVILMTFVI-PKFVGLFSKFNTE 207
>gi|237650923|ref|ZP_04525175.1| pts system, sucrose-specific iibc component [Streptococcus
pneumoniae CCRI 1974]
Length = 382
Score = 36.0 bits (82), Expect = 8.6, Method: Composition-based stats.
Identities = 14/75 (18%), Positives = 34/75 (45%)
Query: 118 VVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQS 177
V +V+ ++ + + + + E G + ++G G P+ I + K +
Sbjct: 175 AVGIVLGMMLVSGSLPNAWAVAQGGEVTAMNFFGFIPVVGLQGSVLPAFIIGVVGAKFEK 234
Query: 178 SIKRAWPDALDLLLI 192
++++ PD +DLL+
Sbjct: 235 AVRKVVPDVIDLLVT 249
>gi|168264008|ref|ZP_02685981.1| protein transport protein HofC [Salmonella enterica subsp. enterica
serovar Hadar str. RI_05P066]
gi|205347510|gb|EDZ34141.1| protein transport protein HofC [Salmonella enterica subsp. enterica
serovar Hadar str. RI_05P066]
Length = 400
Score = 36.0 bits (82), Expect = 8.6, Method: Composition-based stats.
Identities = 24/148 (16%), Positives = 48/148 (32%), Gaps = 10/148 (6%)
Query: 181 RAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFE 240
+ +L + +GI Q L + +G S+ + E++ +A +
Sbjct: 261 QKLAQIFTVLALTQSAGIPFLQGLESAIDSLG--CPYWSQRLTQVHQEIAAGNPVWLALK 318
Query: 241 NFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV 300
N L+++ S+ L L L A+ A+ L P L +
Sbjct: 319 N------TQEFSPLCLQLVRTGEASGSLDIMLHNLARHHSESTLALADNLASLLEPALLI 372
Query: 301 PMIIFFLPVLILVIIGPAILSIIDTMKD 328
+ ++V + I + D M
Sbjct: 373 ITGLII--GTLVVAMYLPIFHLGDAMSG 398
>gi|119491223|ref|ZP_01623320.1| penicillin-binding protein [Lyngbya sp. PCC 8106]
gi|119453564|gb|EAW34725.1| penicillin-binding protein [Lyngbya sp. PCC 8106]
Length = 607
Score = 36.0 bits (82), Expect = 8.6, Method: Composition-based stats.
Identities = 18/77 (23%), Positives = 36/77 (46%), Gaps = 4/77 (5%)
Query: 44 RMKSVAVEREIL--RKQQITSLQKDSASSRLRTRDS--KSLRNFVKKLNLKAILVDENIV 99
R+ SV +R + RK ++ + + S S L ++ + + K+L + + I+
Sbjct: 72 RLASVPAKRGEIIDRKGEVLATSRLSRSVFLWPQEQSPEQWQKTAKQLGGILKIPETKIL 131
Query: 100 NKLRAAGFRSEYSLNIL 116
+L AG+RS + I
Sbjct: 132 EQLEKAGYRSRLPVRIY 148
>gi|62178711|ref|YP_215128.1| type IV pilin biogenesis protein [Salmonella enterica subsp.
enterica serovar Choleraesuis str. SC-B67]
gi|224581987|ref|YP_002635785.1| type IV pilin biogenesis protein [Salmonella enterica subsp.
enterica serovar Paratyphi C strain RKS4594]
gi|62126344|gb|AAX64047.1| putative component in type IV pilin biogenesis [Salmonella enterica
subsp. enterica serovar Choleraesuis str. SC-B67]
gi|224466514|gb|ACN44344.1| protein transport protein HofC [Salmonella enterica subsp. enterica
serovar Paratyphi C strain RKS4594]
gi|322713164|gb|EFZ04735.1| protein transport protein HofC [Salmonella enterica subsp. enterica
serovar Choleraesuis str. A50]
Length = 400
Score = 36.0 bits (82), Expect = 8.6, Method: Composition-based stats.
Identities = 24/148 (16%), Positives = 48/148 (32%), Gaps = 10/148 (6%)
Query: 181 RAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFE 240
+ +L + +GI Q L + +G S+ + E++ +A +
Sbjct: 261 QKLAQIFTVLALTQSAGIPFLQGLESAIDSLG--CPYWSQRLTQVHQEIAAGNPVWLALK 318
Query: 241 NFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV 300
N L+++ S+ L L L A+ A+ L P L +
Sbjct: 319 N------TQEFSPLCLQLVRTGEASGSLDIMLHNLARHHSETTLALADNLASLLEPALLI 372
Query: 301 PMIIFFLPVLILVIIGPAILSIIDTMKD 328
+ ++V + I + D M
Sbjct: 373 ITGLII--GTLVVAMYLPIFHLGDAMSG 398
>gi|312961923|ref|ZP_07776420.1| general secretion pathway protein F [Pseudomonas fluorescens WH6]
gi|311283733|gb|EFQ62317.1| general secretion pathway protein F [Pseudomonas fluorescens WH6]
Length = 400
Score = 36.0 bits (82), Expect = 8.7, Method: Composition-based stats.
Identities = 22/158 (13%), Positives = 52/158 (32%), Gaps = 8/158 (5%)
Query: 170 NLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAEL 229
R A L + +G ++++L + + G + ++
Sbjct: 51 RKAFGRGQLNGAALVSFTQQLATLLGAGQPLERSLGILLKQPG--QPQTRALIERIREQV 108
Query: 230 SFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEK 289
A E + +++++ G ++ ++LR L +L+ E
Sbjct: 109 KAGQPLSKALEE-----EGSQFSPLYLSMVRAGEAGGALENTLRQLSDYLERSQLLRGEV 163
Query: 290 KAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
A + P V ++ L L+L + P + I +
Sbjct: 164 INALIYPAFLVVGVLGSL-ALLLAYVVPQFVPIFKDLG 200
>gi|302189197|ref|ZP_07265870.1| type IV pilus biogenesis protein PilC [Pseudomonas syringae pv.
syringae 642]
Length = 405
Score = 36.0 bits (82), Expect = 8.7, Method: Composition-based stats.
Identities = 25/149 (16%), Positives = 55/149 (36%), Gaps = 10/149 (6%)
Query: 182 AWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFEN 241
+ +++G+ + Q+ +AE G ++ + + E+S + A
Sbjct: 67 DIAFFSRQMATMMKAGVPLLQSFDIIAE--GAENPNMRALVGSLKQEVSAGNSFATALRQ 124
Query: 242 FYNRTQMDCVRNATQALIQSDRYGTSIGDSL-RVLVSETRSERLMEAEKKAASLGPKLTV 300
D N A Q+ ++ L RV + ++ERL KKA + + +
Sbjct: 125 KPEYFD-DLFCNLVDAGEQA----GALESLLDRVASYKEKTERLKAKIKKAMTYPTAVLI 179
Query: 301 PMIIFFLPVLILVIIGPAILSIIDTMKDH 329
+ F + ++L+ + P S+
Sbjct: 180 --VAFIVSGILLIKVVPQFQSVFAGFNAE 206
>gi|292489326|ref|YP_003532213.1| type IV pilus assembly protein tapC [Erwinia amylovora CFBP1430]
gi|292898450|ref|YP_003537819.1| protein transport protein [Erwinia amylovora ATCC 49946]
gi|291198298|emb|CBJ45404.1| protein transport protein [Erwinia amylovora ATCC 49946]
gi|291554760|emb|CBA22553.1| Type IV pilus assembly protein tapC [Erwinia amylovora CFBP1430]
gi|312173491|emb|CBX81745.1| Type IV pilus assembly protein tapC [Erwinia amylovora ATCC
BAA-2158]
Length = 399
Score = 36.0 bits (82), Expect = 8.7, Method: Composition-based stats.
Identities = 19/143 (13%), Positives = 46/143 (32%), Gaps = 10/143 (6%)
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
L L +++G+ + L+ +A+ G ++ +S A + +
Sbjct: 64 FLRQLATLLKAGMPLPACLQLLAD--GHPEAGWQALLIHLHQRISAGEPFSQALREWPDV 121
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
AL+ + + L + ++ +K V M +
Sbjct: 122 FP-----PLIPALVHIGELTGELDECCLQLA--IQQDKQQLLRQKVQKALRYPLVIMAVA 174
Query: 306 FLPVL-ILVIIGPAILSIIDTMK 327
L + +LV + P ++I +
Sbjct: 175 LLVSIGMLVFVLPEFVAIYRSFN 197
>gi|292490576|ref|YP_003526015.1| type II secretion system protein [Nitrosococcus halophilus Nc4]
gi|291579171|gb|ADE13628.1| type II secretion system protein [Nitrosococcus halophilus Nc4]
Length = 410
Score = 36.0 bits (82), Expect = 8.7, Method: Composition-based stats.
Identities = 20/135 (14%), Positives = 50/135 (37%), Gaps = 21/135 (15%)
Query: 190 LLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMD 249
L + +G+ +D+A + E + P+ E + ++ + A E+ Q +
Sbjct: 80 LATLLRAGLPLDRAFSTLIE--IAEEGPVREILTRLQEQVRGGASLAEAMES-----QGE 132
Query: 250 CVRNATQALIQSDRYGTSIGDSLRVLVSET-RSERLMEAEKKAASLGPKLTVPMIIFFLP 308
++I++ G ++ L L RS+ L A P
Sbjct: 133 TFSPLYISMIRAGEAGGALDVILGRLADFMERSKALKNA-------------VTSALIYP 179
Query: 309 VLILVIIGPAILSII 323
+++ + G +++ ++
Sbjct: 180 AILVGVAGLSVIILL 194
>gi|237802035|ref|ZP_04590496.1| type II secretion system protein [Pseudomonas syringae pv. oryzae
str. 1_6]
gi|331024891|gb|EGI04947.1| type II secretion system protein [Pseudomonas syringae pv. oryzae
str. 1_6]
Length = 405
Score = 36.0 bits (82), Expect = 8.7, Method: Composition-based stats.
Identities = 18/128 (14%), Positives = 40/128 (31%), Gaps = 27/128 (21%)
Query: 229 LSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVL------------- 275
+ +F+ + +R +L Q G S +LR
Sbjct: 79 MKAGVPLLQSFDIISEGAENPNMRVLVNSLKQEVSAGNSFATALRQKPEYFDDLFCNLVD 138
Query: 276 ------VSETRSERLMEAEKKAASLGPK----LTVP----MIIFFLPVLILVIIGPAILS 321
E+ +R+ ++K L K +T P ++ + ++L+ + P S
Sbjct: 139 AGEQAGALESLLDRVARYKEKTEKLKAKIKKAMTYPIAVLIVAMIVSGILLIKVVPQFQS 198
Query: 322 IIDTMKDH 329
+ +
Sbjct: 199 VFASFGAQ 206
>gi|258405228|ref|YP_003197970.1| Type II secretion system F domain-containing protein
[Desulfohalobium retbaense DSM 5692]
gi|257797455|gb|ACV68392.1| Type II secretion system F domain protein [Desulfohalobium
retbaense DSM 5692]
Length = 401
Score = 36.0 bits (82), Expect = 8.7, Method: Composition-based stats.
Identities = 24/164 (14%), Positives = 59/164 (35%), Gaps = 18/164 (10%)
Query: 167 WISNLVQKRQSSI-KRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLT 225
++ V+ R I R + +D SG+ I QAL+ + E ++ L ++
Sbjct: 53 FLEGRVKDRDMVIFSRQFATMID-------SGVPILQALQVMCE--QTENDKLRRKLYEV 103
Query: 226 IAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLM 285
++ + A R D + ++ + G + L L + +
Sbjct: 104 RNDIEGGSSLYEAL-----RKHPDVFDDLYTNMVNAGETGGVLDVILDRLATYIEKAANL 158
Query: 286 EAEKKAASL-GPKLTVPMIIFFLPVLILVIIGPAILSIIDTMKD 328
+++ +AA + ++ + +IL+ + P + +
Sbjct: 159 KSKVRAALIYPGVVSFVAVAVI--AIILIFVIPTFEQLFNDFGS 200
>gi|168464305|ref|ZP_02698208.1| protein transport protein HofC [Salmonella enterica subsp. enterica
serovar Newport str. SL317]
gi|195632934|gb|EDX51388.1| protein transport protein HofC [Salmonella enterica subsp. enterica
serovar Newport str. SL317]
Length = 400
Score = 36.0 bits (82), Expect = 8.7, Method: Composition-based stats.
Identities = 24/148 (16%), Positives = 48/148 (32%), Gaps = 10/148 (6%)
Query: 181 RAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFE 240
+ +L + +GI Q L + +G S+ + E++ +A +
Sbjct: 261 QKLAQIFTVLALTQSAGIPFLQGLESAIDSLG--CPYWSQRLTQVHQEIAAGNPVWLALK 318
Query: 241 NFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV 300
N L+++ S+ L L L A+ A+ L P L +
Sbjct: 319 N------TQEFSPLCLQLVRTGEASGSLDIMLHNLARHHSETTLALADNLASLLEPALLI 372
Query: 301 PMIIFFLPVLILVIIGPAILSIIDTMKD 328
+ ++V + I + D M
Sbjct: 373 ITGLII--GTLVVAMYLPIFHLGDAMSG 398
>gi|311693308|gb|ADP96181.1| type II secretion system protein [marine bacterium HP15]
Length = 409
Score = 36.0 bits (82), Expect = 8.9, Method: Composition-based stats.
Identities = 26/154 (16%), Positives = 51/154 (33%), Gaps = 10/154 (6%)
Query: 175 RQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPN 234
R+ + ++GI + + +R +AE +S L+E + L
Sbjct: 61 RKKVTLDELIVFCRQMHALTKAGIPLIRTMRGLAE--TTRSPVLAEVLEDVTTRLEGGTT 118
Query: 235 RQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAE-KKAAS 293
A + A+I + D+ R L ER + K+A
Sbjct: 119 MATAMQAHPK-----VFSELFIAMIHVGENTGMLDDAFRRLSEILELERDTKRRLKQAMR 173
Query: 294 LGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
+ + ++ + V LVI P S+ + +
Sbjct: 174 YPMFVIIALLSALMIVNFLVI--PKFASVFNKLG 205
>gi|242398766|ref|YP_002994190.1| Flagella accessory protein [Thermococcus sibiricus MM 739]
gi|242265159|gb|ACS89841.1| Flagella accessory protein [Thermococcus sibiricus MM 739]
Length = 570
Score = 36.0 bits (82), Expect = 8.9, Method: Composition-based stats.
Identities = 22/159 (13%), Positives = 55/159 (34%), Gaps = 7/159 (4%)
Query: 117 LVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQ 176
++++P I + + +F ++ A+ I + + ++ ++
Sbjct: 20 YARKVLLPSIAGSIILFIVFSLVPRFTTISRIIRIALYAIPILPLVYAIMHPYSMASGKK 79
Query: 177 SSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLT---IAELSFLP 233
I P + + S + ++ + +A++ P+S +M IA+ +
Sbjct: 80 VKINSKIPYFVTYFAVLSTSEVGRNELIHTLAKE--KVLEPISRDMEKIYHLIAKFNRGM 137
Query: 234 NRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSL 272
AF RT + + L S G + + L
Sbjct: 138 P--EAFRFLVKRTPSKVFSDFLERLAYSLDSGVELREYL 174
>gi|330830592|ref|YP_004393544.1| general secretion pathway protein F [Aeromonas veronii B565]
gi|328805728|gb|AEB50927.1| General secretion pathway protein F [Aeromonas veronii B565]
Length = 406
Score = 36.0 bits (82), Expect = 9.0, Method: Composition-based stats.
Identities = 21/159 (13%), Positives = 55/159 (34%), Gaps = 16/159 (10%)
Query: 175 RQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPN 234
R+ + L V +G++I++AL+ VAE L + +++ +
Sbjct: 60 RRGASTAELALITRQLATLVGAGLTIEEALKAVAEQCEKAH--LRSLVATVRSKVVEGYS 117
Query: 235 RQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASL 294
+ F + ++++ + + L L T + M L
Sbjct: 118 LADSLGAFPHVFD-----QLFRSMVAAGEKSGHLEKVLNRLADYTEQRQHMRT-----KL 167
Query: 295 GPKLTVPMIIFF----LPVLILVIIGPAILSIIDTMKDH 329
+ P+++ + ++L + P +++ + M
Sbjct: 168 LQAMIYPIVLTCVAIGVISILLTAVVPKVVAQFEHMGQQ 206
>gi|313291990|gb|ADR51188.1| general secretion pathway protein F [Aeromonas veronii]
Length = 406
Score = 36.0 bits (82), Expect = 9.0, Method: Composition-based stats.
Identities = 21/159 (13%), Positives = 55/159 (34%), Gaps = 16/159 (10%)
Query: 175 RQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPN 234
R+ + L V +G++I++AL+ VAE L + +++ +
Sbjct: 60 RRGASTAELALITRQLATLVGAGLTIEEALKAVAEQCEKAH--LRSLVATVRSKVVEGYS 117
Query: 235 RQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASL 294
+ F + ++++ + + L L T + M L
Sbjct: 118 LADSLGAFPHVFD-----QLFRSMVAAGEKSGHLEKVLNRLADYTEQRQHMRT-----KL 167
Query: 295 GPKLTVPMIIFF----LPVLILVIIGPAILSIIDTMKDH 329
+ P+++ + ++L + P +++ + M
Sbjct: 168 LQAMIYPIVLTCVAIGVISILLTAVVPKVVAQFEHMGQQ 206
>gi|17510841|ref|NP_492667.1| hypothetical protein Y106G6D.3 [Caenorhabditis elegans]
gi|3880676|emb|CAA20976.1| C. elegans protein Y106G6D.3, partially confirmed by transcript
evidence [Caenorhabditis elegans]
Length = 555
Score = 36.0 bits (82), Expect = 9.0, Method: Composition-based stats.
Identities = 15/62 (24%), Positives = 26/62 (41%)
Query: 39 GELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENI 98
+ KR K + R+ R ++I +K R R DS ++ K NL+ D++
Sbjct: 84 SQRSKRKKRESERRKKERSKRIARSKKSIKRDRERDSDSSRIKKSGSKRNLEKSNRDDSK 143
Query: 99 VN 100
Sbjct: 144 RK 145
>gi|73667736|ref|YP_303751.1| membrane-bound proton-translocating pyrophosphatase [Methanosarcina
barkeri str. Fusaro]
gi|72394898|gb|AAZ69171.1| pyrophosphate-energized vacuolar membrane proton pump
[Methanosarcina barkeri str. Fusaro]
Length = 829
Score = 36.0 bits (82), Expect = 9.0, Method: Composition-based stats.
Identities = 19/83 (22%), Positives = 40/83 (48%), Gaps = 4/83 (4%)
Query: 121 LVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVW---ISNLVQKRQS 177
L + +F+ L I + FG+ + + L + A ++G +G + + ++ L R +
Sbjct: 102 LCILFVFIGLCIAFYFGFLQKMPLSGVLLIMAWTILGILGSYTVAWYGIRMNTLANSRTA 161
Query: 178 SIKRAWPDALDLLLICVESGISI 200
+ L LL I +++G+SI
Sbjct: 162 FVSLE-KKPLKLLNIALDAGMSI 183
>gi|208702094|ref|YP_002267400.1| hypothetical protein BCH308197_A0145 [Bacillus cereus H3081.97]
gi|208657949|gb|ACI30319.1| membrane protein, putative [Bacillus cereus H3081.97]
Length = 310
Score = 36.0 bits (82), Expect = 9.0, Method: Composition-based stats.
Identities = 22/194 (11%), Positives = 63/194 (32%), Gaps = 16/194 (8%)
Query: 125 IIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWP 184
+ + + I+ F + + ++ GF P + ++ +
Sbjct: 84 LSGMSIAAIFYFSFGRDP---------FTLISALCGFLVPRFLLYRRKKRYYLVVIDRLS 134
Query: 185 DALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYN 244
+ + ++ + A R + + + EE+ L AF+ F
Sbjct: 135 IYMKAVANALQIS---NNAKRVLVQVKPMMHESIQEEIEKVSLLLEGGTTMHRAFKGFNE 191
Query: 245 RTQMDCVRNATQALIQ-SDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVP-- 301
+ + L S G + L + + ++L A +++ +
Sbjct: 192 TFNFRELVFFHEMLEVCSREGGANSVQVLLDIAEDFEKQKLYLARLRSSLSQAQRAFVQN 251
Query: 302 -MIIFFLPVLILVI 314
+I+ +P++I+++
Sbjct: 252 CLIVIAMPIVIMLM 265
>gi|29831152|ref|NP_825786.1| hypothetical protein SAV_4609 [Streptomyces avermitilis MA-4680]
gi|29608266|dbj|BAC72321.1| putative membrane protein [Streptomyces avermitilis MA-4680]
Length = 101
Score = 36.0 bits (82), Expect = 9.0, Method: Composition-based stats.
Identities = 18/92 (19%), Positives = 34/92 (36%), Gaps = 3/92 (3%)
Query: 229 LSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAE 288
+ A+ + + L ++ G + L +E R+E A
Sbjct: 1 MRLGGEPADAWRRLAS---VPRAGALALLLERAGESGVPAAGPVGRLAAEARAEWGRTAT 57
Query: 289 KKAASLGPKLTVPMIIFFLPVLILVIIGPAIL 320
+A G +T P+ + FLP I V + P ++
Sbjct: 58 ARARRAGVLITAPVGLCFLPAFITVGVLPVVI 89
>gi|228912577|ref|ZP_04076239.1| hypothetical protein bthur0013_66360 [Bacillus thuringiensis IBL
200]
gi|228847046|gb|EEM92038.1| hypothetical protein bthur0013_66360 [Bacillus thuringiensis IBL
200]
Length = 307
Score = 35.6 bits (81), Expect = 9.1, Method: Composition-based stats.
Identities = 22/194 (11%), Positives = 62/194 (31%), Gaps = 16/194 (8%)
Query: 125 IIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWP 184
+ + + ++ F + + ++ GF P + + +
Sbjct: 81 LSGMSIAAVFYFSFGRDP---------FTLITVLSGFLVPRFLLYRRKKCYYLIVIDRLS 131
Query: 185 DALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYN 244
+ + ++ + A R + + + EE+ L AF F
Sbjct: 132 IYMKAVANALQIS---NNAKRVLVQVKPMMHESIQEEIEKVSLLLEGGTTMHRAFREFNE 188
Query: 245 RTQMDCVRNATQALIQ-SDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVP-- 301
+ + L S GT+ L + + ++L A +++ +
Sbjct: 189 TFNFRELVFFHEMLEVCSREGGTNSVQVLLDIAEDFEKQKLYLARLRSSLSQAQRAFVQN 248
Query: 302 -MIIFFLPVLILVI 314
+I+ +P++I+++
Sbjct: 249 CLIVIAMPIVIMLM 262
>gi|229020884|ref|ZP_04177583.1| hypothetical protein bcere0030_53430 [Bacillus cereus AH1273]
gi|229027756|ref|ZP_04183937.1| hypothetical protein bcere0029_59410 [Bacillus cereus AH1272]
gi|229035194|ref|ZP_04189130.1| hypothetical protein bcere0028_52120 [Bacillus cereus AH1271]
gi|228728086|gb|EEL79126.1| hypothetical protein bcere0028_52120 [Bacillus cereus AH1271]
gi|228733548|gb|EEL84351.1| hypothetical protein bcere0029_59410 [Bacillus cereus AH1272]
gi|228740416|gb|EEL90715.1| hypothetical protein bcere0030_53430 [Bacillus cereus AH1273]
Length = 307
Score = 35.6 bits (81), Expect = 9.1, Method: Composition-based stats.
Identities = 22/194 (11%), Positives = 63/194 (32%), Gaps = 16/194 (8%)
Query: 125 IIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWP 184
+ + + I+ F + + ++ GF P + ++ +
Sbjct: 81 LSGMSIAAIFYFSFGRDP---------FTLISALCGFLVPRFLLYRRKKRYYLVVIDRLS 131
Query: 185 DALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYN 244
+ + ++ + A R + + + EE+ L AF+ F
Sbjct: 132 IYMKAVANALQIS---NNAKRVLVQVKPMMHESIQEEIEKVSLLLEGGTTMHRAFKGFNE 188
Query: 245 RTQMDCVRNATQALIQ-SDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVP-- 301
+ + L S G + L + + ++L A +++ +
Sbjct: 189 TFNFRELVFFHEMLEVCSREGGANSVQVLLDIAEDFEKQKLYLARLRSSLSQAQRAFVQN 248
Query: 302 -MIIFFLPVLILVI 314
+I+ +P++I+++
Sbjct: 249 CLIVIAMPIVIMLM 262
>gi|188588695|ref|YP_001922601.1| pts system, sucrose-specific iibc component [Clostridium botulinum
E3 str. Alaska E43]
gi|188498976|gb|ACD52112.1| pts system, sucrose-specific iibc component [Clostridium botulinum
E3 str. Alaska E43]
Length = 451
Score = 35.6 bits (81), Expect = 9.1, Method: Composition-based stats.
Identities = 20/78 (25%), Positives = 40/78 (51%), Gaps = 9/78 (11%)
Query: 124 PIIFLILGIIWI-------FGYDKLLEYPFQLRVGAV--ILIGYVGFCAPSVWISNLVQK 174
P+I +++G++ + +G E P L + V ++GY G P++ + + K
Sbjct: 173 PVIGMVIGLMLVAPQLPNAYGVAAGTESPIYLSMLGVSIPVVGYQGSVLPALVLGIIAAK 232
Query: 175 RQSSIKRAWPDALDLLLI 192
Q ++K+ PD LDL++
Sbjct: 233 TQKALKKVIPDVLDLIVT 250
>gi|297617363|ref|YP_003702522.1| type II secretion system F domain protein [Syntrophothermus
lipocalidus DSM 12680]
gi|297145200|gb|ADI01957.1| Type II secretion system F domain protein [Syntrophothermus
lipocalidus DSM 12680]
Length = 402
Score = 35.6 bits (81), Expect = 9.2, Method: Composition-based stats.
Identities = 20/160 (12%), Positives = 54/160 (33%), Gaps = 8/160 (5%)
Query: 166 VWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLT 225
W+ + ++ + + + SG+ + L V+ + + + L
Sbjct: 47 WWLQWRAPVTKKIGSQSLAVLCRQMAMVLRSGMGVSDGLELVSRQVSDRLLRREA--LRL 104
Query: 226 IAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLM 285
E+ + A + + + + + + G ++ L + +
Sbjct: 105 YREVLSGRSLSEAM--MAEDSLIPGL--LARMVATGEASG-NLEQILHNMSQYYQQRYET 159
Query: 286 EAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDT 325
E K A + P L + + I L + +I P + S++ +
Sbjct: 160 EKRVKGALIYPALLMVVGIGLLAYVFAFLI-PQVESLLHS 198
>gi|228969255|ref|ZP_04130133.1| hypothetical protein bthur0004_59760 [Bacillus thuringiensis
serovar sotto str. T04001]
gi|228790448|gb|EEM38171.1| hypothetical protein bthur0004_59760 [Bacillus thuringiensis
serovar sotto str. T04001]
Length = 133
Score = 35.6 bits (81), Expect = 9.2, Method: Composition-based stats.
Identities = 20/104 (19%), Positives = 37/104 (35%), Gaps = 8/104 (7%)
Query: 218 LSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRV--- 274
L + AEL F+NF V T AL Q+ + T SLR+
Sbjct: 22 LRSYVSTLTAELEMYAGSDQPFKNFAAALNNPEVNTFTIALQQAQK--TDKVQSLRIMDA 79
Query: 275 LVSETRSERLMEAEKKAASLGPKL---TVPMIIFFLPVLILVII 315
+ R + + + ++ V +I + ++++I
Sbjct: 80 QIKMMRELKHENYNRLIQNKPMEMNKFNVALIGCIVIYPMVIVI 123
>gi|78049223|ref|YP_365398.1| type II secretory pathway component [Xanthomonas campestris pv.
vesicatoria str. 85-10]
gi|78037653|emb|CAJ25398.1| type II secretory pathway component [Xanthomonas campestris pv.
vesicatoria str. 85-10]
Length = 405
Score = 35.6 bits (81), Expect = 9.2, Method: Composition-based stats.
Identities = 20/149 (13%), Positives = 51/149 (34%), Gaps = 12/149 (8%)
Query: 180 KRAWPDALDLLLICVESGISIDQALRRVAE--DIGGQSVPLSEEMLLTIAELSFLPNRQV 237
A L + +G +D+AL + + + + + +
Sbjct: 65 NAALVQFTQQLATLIGAGQPLDRALSILMDLPEDEKSRRVIGD----VRDTVRGGAPLSS 120
Query: 238 AFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPK 297
A E Q ++++ G S+ D+L+ L R + + A + P
Sbjct: 121 ALER-----QHGLFSKLYINMVRAGEAGGSMQDTLQRLADYLERSRALRGKVINALIYPA 175
Query: 298 LTVPMIIFFLPVLILVIIGPAILSIIDTM 326
+ + ++ L L+ ++ P + +++
Sbjct: 176 ILLAVVGCALLFLLGYVV-PQFAQMYESL 203
>gi|309362262|emb|CAP28404.2| hypothetical protein CBG_08618 [Caenorhabditis briggsae AF16]
Length = 417
Score = 35.6 bits (81), Expect = 9.3, Method: Composition-based stats.
Identities = 18/67 (26%), Positives = 31/67 (46%)
Query: 43 KRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKL 102
KR K+ ER + RKQ+ ++ K AS +L + V++ + + +E + L
Sbjct: 262 KRRKTQLKERRLRRKQREMAMMKRRASKKLPLSRIQDDPRVVRRSPIGKVTFNEKMFQLL 321
Query: 103 RAAGFRS 109
G RS
Sbjct: 322 EEYGIRS 328
>gi|94499731|ref|ZP_01306268.1| general secretion pathway protein F [Oceanobacter sp. RED65]
gi|94428485|gb|EAT13458.1| general secretion pathway protein F [Oceanobacter sp. RED65]
Length = 404
Score = 35.6 bits (81), Expect = 9.3, Method: Composition-based stats.
Identities = 18/138 (13%), Positives = 42/138 (30%), Gaps = 20/138 (14%)
Query: 180 KRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSF----LPNR 235
L + +G+ I++ALR A+ + I ++ +
Sbjct: 64 VADLALLTRQLSTLIGAGLPIEEALRATADQTEK------RRIKTMIMDVRSKVLEGHSL 117
Query: 236 QVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLG 295
A +F +A + + + + L L A++ +
Sbjct: 118 ANALNDFSYAFP-----QLYRATVAAGEHAGHLDTVLNRLADYM-----ERAQENQQKIK 167
Query: 296 PKLTVPMIIFFLPVLILV 313
P+I+ + + I+V
Sbjct: 168 LAAVYPIILCIVAIAIVV 185
>gi|16763532|ref|NP_459147.1| type IV pilin biogenesis protein [Salmonella enterica subsp.
enterica serovar Typhimurium str. LT2]
gi|167990016|ref|ZP_02571116.1| protein transport protein HofC [Salmonella enterica subsp. enterica
serovar 4,[5],12:i:- str. CVM23701]
gi|168243442|ref|ZP_02668374.1| protein transport protein HofC [Salmonella enterica subsp. enterica
serovar Heidelberg str. SL486]
gi|194450042|ref|YP_002044112.1| type IV pilin biogenesis protein [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL476]
gi|16418642|gb|AAL19106.1| putative component in type IV pilin biogenesis [Salmonella enterica
subsp. enterica serovar Typhimurium str. LT2]
gi|194408346|gb|ACF68565.1| protein transport protein HofC [Salmonella enterica subsp. enterica
serovar Heidelberg str. SL476]
gi|205331469|gb|EDZ18233.1| protein transport protein HofC [Salmonella enterica subsp. enterica
serovar 4,[5],12:i:- str. CVM23701]
gi|205337541|gb|EDZ24305.1| protein transport protein HofC [Salmonella enterica subsp. enterica
serovar Heidelberg str. SL486]
gi|261245375|emb|CBG23164.1| protein transport protein HofC [Salmonella enterica subsp. enterica
serovar Typhimurium str. D23580]
gi|267991821|gb|ACY86706.1| type IV pilin biogenesis protein [Salmonella enterica subsp.
enterica serovar Typhimurium str. 14028S]
gi|301156770|emb|CBW16245.1| protein transport protein HofC [Salmonella enterica subsp. enterica
serovar Typhimurium str. SL1344]
gi|312911112|dbj|BAJ35086.1| type IV pilin biogenesis protein [Salmonella enterica subsp.
enterica serovar Typhimurium str. T000240]
gi|321222282|gb|EFX47354.1| Type IV fimbrial assembly protein PilC [Salmonella enterica subsp.
enterica serovar Typhimurium str. TN061786]
gi|323128462|gb|ADX15892.1| type IV pilin biogenesis protein [Salmonella enterica subsp.
enterica serovar Typhimurium str. 4/74]
gi|332987095|gb|AEF06078.1| type IV pilin biogenesis protein [Salmonella enterica subsp.
enterica serovar Typhimurium str. UK-1]
Length = 400
Score = 35.6 bits (81), Expect = 9.3, Method: Composition-based stats.
Identities = 24/148 (16%), Positives = 48/148 (32%), Gaps = 10/148 (6%)
Query: 181 RAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFE 240
+ +L + +GI Q L + +G S+ + E++ +A +
Sbjct: 261 QKLAQIFTVLALTQSAGIPFLQGLESAIDSLG--CPYWSQRLTQVHQEIAAGNPVWLALK 318
Query: 241 NFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV 300
N L+++ S+ L L L A+ A+ L P L +
Sbjct: 319 N------TQEFSPLCLQLVRTGEASGSLDIMLHNLARHHSETTLALADNLASLLEPALLI 372
Query: 301 PMIIFFLPVLILVIIGPAILSIIDTMKD 328
+ ++V + I + D M
Sbjct: 373 ITGLII--GTLVVAMYLPIFHLGDAMSG 398
>gi|168486418|ref|ZP_02710926.1| pts system, sucrose-specific iibc component [Streptococcus
pneumoniae CDC1087-00]
gi|183570591|gb|EDT91119.1| pts system, sucrose-specific iibc component [Streptococcus
pneumoniae CDC1087-00]
Length = 627
Score = 35.6 bits (81), Expect = 9.3, Method: Composition-based stats.
Identities = 14/75 (18%), Positives = 34/75 (45%)
Query: 118 VVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQS 177
V +V+ ++ + + + + E G + ++G G P+ I + K +
Sbjct: 175 AVGIVLGMMLVSGSLPNAWAVAQGGEVTAMNFFGFIPVVGLQGSILPAFIIGVVGAKFEK 234
Query: 178 SIKRAWPDALDLLLI 192
++++ PD +DLL+
Sbjct: 235 AVRKVVPDVIDLLVT 249
>gi|157376160|ref|YP_001474760.1| type II secretion system protein [Shewanella sediminis HAW-EB3]
gi|157318534|gb|ABV37632.1| type II secretion system protein [Shewanella sediminis HAW-EB3]
Length = 403
Score = 35.6 bits (81), Expect = 9.3, Method: Composition-based stats.
Identities = 18/124 (14%), Positives = 43/124 (34%), Gaps = 9/124 (7%)
Query: 190 LLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMD 249
L + ++SG+ ID+AL +A G L++ + ++ + A
Sbjct: 74 LSLLLQSGVKIDKALSVLARTKSGT--ALADLLQKLSNDVRKGQSLSEAMAKHPKVFD-- 129
Query: 250 CVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPV 309
+ + G ++ + L + + E + K +V +++ V
Sbjct: 130 --NLYINLVTIGESSG-NLVEVFAGLAQDL--KYRKELKSKITQAIVYPSVILLVCICSV 184
Query: 310 LILV 313
L +
Sbjct: 185 LFIF 188
>gi|228912546|ref|ZP_04076211.1| hypothetical protein bthur0013_66050 [Bacillus thuringiensis IBL
200]
gi|228847116|gb|EEM92105.1| hypothetical protein bthur0013_66050 [Bacillus thuringiensis IBL
200]
Length = 307
Score = 35.6 bits (81), Expect = 9.5, Method: Composition-based stats.
Identities = 22/194 (11%), Positives = 62/194 (31%), Gaps = 16/194 (8%)
Query: 125 IIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWP 184
+ + + ++ F + + ++ GF P + ++ +
Sbjct: 81 LSGMSIAAVFYFSFGQDP---------YTLITILCGFLVPRFLLYRRKKRYYLVVIDRLS 131
Query: 185 DALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYN 244
+ + ++ + A R + + + EE+ L AF F
Sbjct: 132 IYMKAVANALQIS---NNAKRVLVQVKPMMHESIQEEIEKVSLLLEGGTTMHRAFRGFNE 188
Query: 245 RTQMDCVRNATQALIQ-SDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVP-- 301
+ + L S G + L + + ++L A +++ +
Sbjct: 189 TFNFRELVFFHEMLEVCSREGGANSVQVLLDIAEDFEKQKLYLARLRSSLSQAQRAFVQN 248
Query: 302 -MIIFFLPVLILVI 314
+I+ +P+LI+++
Sbjct: 249 CLIVIAMPILIMLM 262
>gi|55980763|ref|YP_144060.1| pilus assembly protein PilC [Thermus thermophilus HB8]
gi|55772176|dbj|BAD70617.1| pilus assembly protein PilC [Thermus thermophilus HB8]
Length = 406
Score = 35.6 bits (81), Expect = 9.5, Method: Composition-based stats.
Identities = 21/154 (13%), Positives = 48/154 (31%), Gaps = 17/154 (11%)
Query: 180 KRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAF 239
+ L + +G+++ QAL + + ++ E + ++ A
Sbjct: 64 LKDLAIFSRQLATMLGAGLTLLQALAIL--ERQTENRKFREILKQVRTDVEGGMAFSEAL 121
Query: 240 ENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLT 299
++ L+++ + L L S E + + +T
Sbjct: 122 ------SKHKIFSRLYVNLVRAGETSGGLDLILDRLASFLEKELELR-----GKIRSAMT 170
Query: 300 VPMIIFFLPV----LILVIIGPAILSIIDTMKDH 329
P+I+F V +L I P I+ +
Sbjct: 171 YPVIVFVFAVGVAYFLLTGIVPQFAQILTDLGSE 204
>gi|257485376|ref|ZP_05639417.1| general secretion pathway protein GspF [Pseudomonas syringae pv.
tabaci ATCC 11528]
Length = 240
Score = 35.6 bits (81), Expect = 9.6, Method: Composition-based stats.
Identities = 22/146 (15%), Positives = 51/146 (34%), Gaps = 8/146 (5%)
Query: 182 AWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFEN 241
A L + +G ++++L + + G + ++ VA E
Sbjct: 63 ALVSFTQQLATLLGAGQPLERSLGILLKQPG--QPQTRALIERIREQVKAGKPLSVALEE 120
Query: 242 FYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVP 301
+ +++++ G ++ +LR L +L+ E A + P V
Sbjct: 121 -----EGTQFSPLYISMVRAGEAGGALESTLRQLSDYLERSQLLRGEVINALIYPAFLVV 175
Query: 302 MIIFFLPVLILVIIGPAILSIIDTMK 327
++ L L+L + P + I +
Sbjct: 176 GVLGSL-ALLLAYVVPQFVPIFKDLG 200
>gi|58580471|ref|YP_199487.1| general secretion pathway protein F [Xanthomonas oryzae pv. oryzae
KACC10331]
gi|188578592|ref|YP_001915521.1| general secretion pathway protein F [Xanthomonas oryzae pv. oryzae
PXO99A]
gi|58425065|gb|AAW74102.1| general secretion pathway protein F [Xanthomonas oryzae pv. oryzae
KACC10331]
gi|188523044|gb|ACD60989.1| general secretion pathway protein F [Xanthomonas oryzae pv. oryzae
PXO99A]
Length = 405
Score = 35.6 bits (81), Expect = 9.6, Method: Composition-based stats.
Identities = 20/149 (13%), Positives = 51/149 (34%), Gaps = 12/149 (8%)
Query: 180 KRAWPDALDLLLICVESGISIDQALRRVAE--DIGGQSVPLSEEMLLTIAELSFLPNRQV 237
A L + +G +D+AL + + + + + +
Sbjct: 65 NAALVQFTQQLATLIGAGQPLDRALSILMDLPEDEKSRRVIGD----VRDTVRGGAPLSS 120
Query: 238 AFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPK 297
A E Q ++++ G S+ D+L+ L R + + A + P
Sbjct: 121 ALER-----QHGLFSKLYINMVRAGEAGGSMQDTLQRLADYLERSRALRGKVINALIYPA 175
Query: 298 LTVPMIIFFLPVLILVIIGPAILSIIDTM 326
+ + ++ L L+ ++ P + +++
Sbjct: 176 ILLAVVGCALLFLLGYVV-PQFAQMYESL 203
>gi|41615076|ref|NP_963574.1| hypothetical protein NEQ285 [Nanoarchaeum equitans Kin4-M]
gi|40068800|gb|AAR39135.1| NEQ285 [Nanoarchaeum equitans Kin4-M]
Length = 606
Score = 35.6 bits (81), Expect = 9.6, Method: Composition-based stats.
Identities = 36/227 (15%), Positives = 89/227 (39%), Gaps = 22/227 (9%)
Query: 108 RSEYSLNILLVVRLVVPIIFLILGIIW--IFGYDKLLEYPFQLRVGAVILIGYVGFCAPS 165
+ +Y L IL+ + + IIFL + ++ ++ + + +LIG+ +
Sbjct: 281 KRQYRLLILVPLFFLWLIIFLNASSHYKEYKMFNSIVSLAYTFLLVLFLLIGFALYFIDI 340
Query: 166 VWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLT 225
+ N ++K + L+ L V G S+++AL ++ + G ++E +
Sbjct: 341 YSLYNKIKK----MVNQLIIFLETLKSYVSLGYSLERALSLTSKKLQGL--EIAELLYNI 394
Query: 226 IAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDS--------LR-VLV 276
+++ +A + + + +I + G + LR V
Sbjct: 395 ENKINENKPLDIAVKEALKKYNNPIIETIFDIIIANYNKGLTSLSELLDSLLDYLRKVNA 454
Query: 277 SETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSII 323
+ R++ L+ + + +P+++ +V IG ++SI+
Sbjct: 455 ALERTKDLLSEAISEMKMQIIMLIPVMLGI-----IVGIGNFMISIM 496
>gi|87301567|ref|ZP_01084407.1| pili biogenesis protein [Synechococcus sp. WH 5701]
gi|87283784|gb|EAQ75738.1| pili biogenesis protein [Synechococcus sp. WH 5701]
Length = 466
Score = 35.6 bits (81), Expect = 9.6, Method: Composition-based stats.
Identities = 23/153 (15%), Positives = 54/153 (35%), Gaps = 14/153 (9%)
Query: 180 KRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAF 239
R L V+SG+ I + L VA+ + + + +++S + VA
Sbjct: 125 VREKALFASKLSALVDSGVPIVRGLTLVAK--QQKKPIFRQALEAVASDVSQGVSLGVAM 182
Query: 240 ENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLT 299
+ T A++++ G + ++L+ L ++ + K A P
Sbjct: 183 RRWPKVFD-----RITIAMVEAGELGGVLDETLKRLALLLEQNAKLQNQIKGALAYP--- 234
Query: 300 VPMIIFFLPVLIL---VIIGPAILSIIDTMKDH 329
+++ + L + + P I + +
Sbjct: 235 -VIVLLIAIAVFLGMTIFLIPTFADIFEQLGAE 266
>gi|225871556|ref|YP_002752914.1| hypothetical protein BCA_A0067 [Bacillus cereus 03BB102]
gi|225785496|gb|ACO25714.1| putative membrane protein [Bacillus cereus 03BB102]
Length = 310
Score = 35.6 bits (81), Expect = 9.7, Method: Composition-based stats.
Identities = 22/194 (11%), Positives = 61/194 (31%), Gaps = 16/194 (8%)
Query: 125 IIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWP 184
+ + I+ F + + ++ GF P + ++ +
Sbjct: 84 FSGMSIAAIFYFSFGRDP---------FTLITVLCGFLVPRFLLYRRKKRYYLVVIDRLS 134
Query: 185 DALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYN 244
+ + ++ + A R + + + EE+ L AF F
Sbjct: 135 IYMKAVANALQIS---NNAKRVLVQVKPMMHESIQEEIEKVSLLLEGGTTMHRAFRGFNE 191
Query: 245 RTQMDCVRNATQALIQ-SDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVP-- 301
+ + L S G + L + + ++L A +++ +
Sbjct: 192 TFNFRELVFFHEMLEVCSREGGANSVQVLLDIAEDFEKQKLYLARLRSSLSQAQRAFVQN 251
Query: 302 -MIIFFLPVLILVI 314
+I+ +P++I+++
Sbjct: 252 CLIVIAMPIVIMLM 265
>gi|294625722|ref|ZP_06704342.1| general secretion pathway protein F [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 11122]
gi|294666165|ref|ZP_06731421.1| general secretion pathway protein F [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 10535]
gi|325928118|ref|ZP_08189329.1| Type II secretory pathway, component [Xanthomonas perforans 91-118]
gi|292599958|gb|EFF44075.1| general secretion pathway protein F [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 11122]
gi|292604081|gb|EFF47476.1| general secretion pathway protein F [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 10535]
gi|325541507|gb|EGD13038.1| Type II secretory pathway, component [Xanthomonas perforans 91-118]
Length = 405
Score = 35.6 bits (81), Expect = 9.8, Method: Composition-based stats.
Identities = 20/149 (13%), Positives = 51/149 (34%), Gaps = 12/149 (8%)
Query: 180 KRAWPDALDLLLICVESGISIDQALRRVAE--DIGGQSVPLSEEMLLTIAELSFLPNRQV 237
A L + +G +D+AL + + + + + +
Sbjct: 65 NAALVQFTQQLATLIGAGQPLDRALSILMDLPEDEKSRRVIGD----VRDTVRGGAPLSS 120
Query: 238 AFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPK 297
A E Q ++++ G S+ D+L+ L R + + A + P
Sbjct: 121 ALER-----QHGLFSKLYINMVRAGEAGGSMQDTLQRLADYLERSRALRGKVINALIYPA 175
Query: 298 LTVPMIIFFLPVLILVIIGPAILSIIDTM 326
+ + ++ L L+ ++ P + +++
Sbjct: 176 ILLAVVGCALLFLLGYVV-PQFAQMYESL 203
>gi|16759139|ref|NP_454756.1| type IV pilin biogenesis protein [Salmonella enterica subsp.
enterica serovar Typhi str. CT18]
gi|29140689|ref|NP_804031.1| type IV pilin biogenesis protein [Salmonella enterica subsp.
enterica serovar Typhi str. Ty2]
gi|213420543|ref|ZP_03353609.1| type IV pilin biogenesis protein [Salmonella enterica subsp.
enterica serovar Typhi str. E01-6750]
gi|213427393|ref|ZP_03360143.1| type IV pilin biogenesis protein [Salmonella enterica subsp.
enterica serovar Typhi str. E02-1180]
gi|213612707|ref|ZP_03370533.1| type IV pilin biogenesis protein [Salmonella enterica subsp.
enterica serovar Typhi str. E98-2068]
gi|213648263|ref|ZP_03378316.1| type IV pilin biogenesis protein [Salmonella enterica subsp.
enterica serovar Typhi str. J185]
gi|289823718|ref|ZP_06543330.1| type IV pilin biogenesis protein [Salmonella enterica subsp.
enterica serovar Typhi str. E98-3139]
gi|25297478|pir||AE0520 protein transport protein HofC STY0164 [imported] - Salmonella
enterica subsp. enterica serovar Typhi (strain CT18)
gi|16501429|emb|CAD01301.1| protein transport protein HofC [Salmonella enterica subsp. enterica
serovar Typhi]
gi|29136313|gb|AAO67880.1| transport protein HofC [Salmonella enterica subsp. enterica serovar
Typhi str. Ty2]
Length = 400
Score = 35.6 bits (81), Expect = 9.8, Method: Composition-based stats.
Identities = 24/148 (16%), Positives = 48/148 (32%), Gaps = 10/148 (6%)
Query: 181 RAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFE 240
+ +L + +GI Q L + +G S+ + E++ +A +
Sbjct: 261 QKLAQIFTVLALTQSAGIPFLQGLESAIDSLG--CPYWSQRLTQVHQEIAAGNPVWLALK 318
Query: 241 NFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV 300
N L+++ S+ L L L A+ A+ L P L +
Sbjct: 319 N------TQEFSPLCLQLVRTGEASGSLDIMLHNLARHHSESTLALADNLASLLEPALLI 372
Query: 301 PMIIFFLPVLILVIIGPAILSIIDTMKD 328
+ ++V + I + D M
Sbjct: 373 ITGLII--GTLVVAMYLPIFHLGDAMSG 398
>gi|332663337|ref|YP_004446125.1| N-acyl-D-glutamate deacylase [Haliscomenobacter hydrossis DSM 1100]
gi|332332151|gb|AEE49252.1| N-acyl-D-glutamate deacylase [Haliscomenobacter hydrossis DSM 1100]
Length = 524
Score = 35.6 bits (81), Expect = 9.9, Method: Composition-based stats.
Identities = 19/107 (17%), Positives = 38/107 (35%), Gaps = 17/107 (15%)
Query: 203 ALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYN------------RTQMD- 249
++ V + G + L +E+ + S P Q+ F D
Sbjct: 348 SISAVTQKSQGSTYSLDDEIETILNLCSRGPRVQMVFHKMGEEDVKKIMKFPFCMIASDA 407
Query: 250 CVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGP 296
V + ++++ YGT+ RVL R +++M E+ +
Sbjct: 408 GVASFGRSMLHPRAYGTNA----RVLAEYVREQKIMALEEAIRKMTT 450
>gi|59712794|ref|YP_205570.1| pilus assembly protein PilC [Vibrio fischeri ES114]
gi|59480895|gb|AAW86682.1| pilus assembly protein PilC [Vibrio fischeri ES114]
gi|83338469|gb|ABC11894.1| PilC [Vibrio fischeri ES114]
Length = 412
Score = 35.6 bits (81), Expect = 9.9, Method: Composition-based stats.
Identities = 20/148 (13%), Positives = 49/148 (33%), Gaps = 12/148 (8%)
Query: 168 ISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIA 227
IS+ + + + ++ L + SG+ + Q+L +AE+ + +
Sbjct: 59 ISSFEKMKHAVKRKDITLFTRQLSTMLASGVPVVQSLHLIAEN--NTKAEMKSILHQVCL 116
Query: 228 ELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEA 287
+ A T + LI + S+ + L E R +
Sbjct: 117 SIEAGTQLSKAL-----STSCSHFDSFYIDLIATGEETGSLAQAFARLA-EYREK-SDAL 169
Query: 288 EKKAASLGPKLTVPMIIFFLPVLILVII 315
K + P ++F + + + +++
Sbjct: 170 RSKVIKA---MIYPTMVFLVAITVTILM 194
>gi|124268322|ref|YP_001022326.1| general secretory pathway protein F [Methylibium petroleiphilum
PM1]
gi|124261097|gb|ABM96091.1| general secretory pathway protein F [Methylibium petroleiphilum
PM1]
Length = 404
Score = 35.6 bits (81), Expect = 10.0, Method: Composition-based stats.
Identities = 25/126 (19%), Positives = 48/126 (38%), Gaps = 9/126 (7%)
Query: 190 LLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMD 249
L V +G+ +++AL + ++ E + AE++ A N R D
Sbjct: 74 LAGLVSAGLPLERALTALTDEAEDPRQ--RELLAHLRAEVNAGSPFARALGN-APREFDD 130
Query: 250 CVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKL--TVPMIIFFL 307
R A Q+ + G L L + + + ++ A+L P + V ++I
Sbjct: 131 VYRAVVGAGEQTGQLGL----VLEKLADDLEERQELRSKLIGAALYPAIVSLVAIVIVVF 186
Query: 308 PVLILV 313
V +V
Sbjct: 187 LVTYVV 192
Database: nr
Posted date: May 22, 2011 12:22 AM
Number of letters in database: 999,999,966
Number of sequences in database: 2,987,313
Database: /data/usr2/db/fasta/nr.01
Posted date: May 22, 2011 12:30 AM
Number of letters in database: 999,999,796
Number of sequences in database: 2,903,041
Database: /data/usr2/db/fasta/nr.02
Posted date: May 22, 2011 12:36 AM
Number of letters in database: 999,999,281
Number of sequences in database: 2,904,016
Database: /data/usr2/db/fasta/nr.03
Posted date: May 22, 2011 12:41 AM
Number of letters in database: 999,999,960
Number of sequences in database: 2,935,328
Database: /data/usr2/db/fasta/nr.04
Posted date: May 22, 2011 12:46 AM
Number of letters in database: 842,794,627
Number of sequences in database: 2,394,679
Lambda K H
0.317 0.152 0.390
Lambda K H
0.267 0.0466 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,873,123,669
Number of Sequences: 14124377
Number of extensions: 255343760
Number of successful extensions: 2198665
Number of sequences better than 10.0: 5263
Number of HSP's better than 10.0 without gapping: 3093
Number of HSP's successfully gapped in prelim test: 3492
Number of HSP's that attempted gapping in prelim test: 2182741
Number of HSP's gapped (non-prelim): 12767
length of query: 329
length of database: 4,842,793,630
effective HSP length: 139
effective length of query: 190
effective length of database: 2,879,505,227
effective search space: 547105993130
effective search space used: 547105993130
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.0 bits)
S2: 82 (36.0 bits)