RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|254780721|ref|YP_003065134.1| pilus component protein [Candidatus Liberibacter asiaticus str. psy62] (329 letters) >gnl|CDD|152940 pfam12506, DUF3713, Protein of unknown function (DUF3713). This family of proteins is found in bacteria. Proteins in this family are typically between 92 and 1225 amino acids in length. There is a single completely conserved residue S that may be functionally important. Length = 116 Score = 33.2 bits (76), Expect = 0.096 Identities = 18/83 (21%), Positives = 38/83 (45%), Gaps = 5/83 (6%) Query: 40 ELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIV 99 +LE K + + ++ +++ TS K + + + D L++ K+ KA + +V Sbjct: 1 KLENYFKDLITKNKVGQEETNTSSDKSTNKLKTKDADVDKLKDKKTKVETKA----KELV 56 Query: 100 NKLRAAGF-RSEYSLNILLVVRL 121 KL+ +YS IL+ + Sbjct: 57 EKLKVTTAPSPQYSQIILVKSKN 79 >gnl|CDD|182361 PRK10294, PRK10294, 6-phosphofructokinase 2; Provisional. Length = 309 Score = 32.1 bits (73), Expect = 0.23 Identities = 39/140 (27%), Positives = 58/140 (41%), Gaps = 33/140 (23%) Query: 138 YDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESG 197 + +L E ++ GA+++I G P V + L Q ++ K+ + I SG Sbjct: 118 FRQLEEQVLEIESGAILVIS--GSLPPGVKLEKLTQLISAAQKQG------IRCIIDSSG 169 Query: 198 ISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQA 257 ++ AL IG E + ELS L NR + TQ D VR A Q Sbjct: 170 DALSAAL-----AIGN-----IELVKPNQKELSALVNRDL--------TQPDDVRKAAQE 211 Query: 258 LIQSDRYGTSIGDSLRVLVS 277 L+ S G + RV+VS Sbjct: 212 LVNS-------GKAKRVVVS 224 >gnl|CDD|183644 PRK12644, PRK12644, putative monovalent cation/H+ antiporter subunit A; Reviewed. Length = 965 Score = 31.4 bits (72), Expect = 0.37 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 1/47 (2%) Query: 111 YSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIG 157 + L ++LV +VVP L LG W +L + P Q+ VG VI+ Sbjct: 566 FYLGVILVTLVVVPGAALALGTRWPPDV-RLWDSPAQVVVGLVIIAA 611 >gnl|CDD|163062 TIGR02891, CtaD_CoxA, cytochrome c oxidase, subunit I. These families, as well as archaeal and eukaryotic cytochrome c subunit I's are included within the superfamily model, pfam00115. Length = 506 Score = 30.3 bits (69), Expect = 0.63 Identities = 9/28 (32%), Positives = 14/28 (50%) Query: 1 MPHYFFDLFDATELAVAITTAVSIFSLI 28 MP F A + +A+ T V +F+ I Sbjct: 290 MPPLALAFFSAATMLIAVPTGVKVFNWI 317 >gnl|CDD|152452 pfam12017, Transposase_37, Transposase protein. Protein in this family are transposases found in insects. This region is about 230 amino acids in length and is found associated with pfam05485. Length = 236 Score = 30.2 bits (68), Expect = 0.81 Identities = 17/66 (25%), Positives = 34/66 (51%), Gaps = 7/66 (10%) Query: 47 SVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAG 106 + +E + LR Q+I +L+K+ S R + +S+ L + K + E + L++ G Sbjct: 15 TTLMENKSLR-QKIRALEKEMHSLRQQLEESQQLEKSLGK------IFTETQIKILKSGG 67 Query: 107 FRSEYS 112 RS ++ Sbjct: 68 KRSTFN 73 >gnl|CDD|177276 PHA00431, PHA00431, internal virion protein C. Length = 746 Score = 30.1 bits (68), Expect = 0.89 Identities = 27/85 (31%), Positives = 38/85 (44%), Gaps = 24/85 (28%) Query: 39 GELEKRMKSVAVER--EILRK---QQI-------TSLQKDS--ASSRLRTRDSKSLRNFV 84 G ++R K A ER EI+RK +Q T L +D A LR K+ RN Sbjct: 59 GAYDERRKDKADERSNEIIRKLTPEQRREAIKNGTLLYQDDPYAMEALRF---KTGRN-- 113 Query: 85 KKLNLKAILVDENIVNKLRAAGFRS 109 A LVD+ + K++ FR+ Sbjct: 114 -----AAYLVDDEVAQKIKNGEFRT 133 >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional. Length = 623 Score = 29.4 bits (66), Expect = 1.2 Identities = 30/104 (28%), Positives = 47/104 (45%), Gaps = 18/104 (17%) Query: 196 SGISIDQ-ALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNA 254 SG S+ AL R+ E GG ++MLL +RQV + + QM VR A Sbjct: 53 SGKSVTALALMRLLEQAGGLVQ--CDKMLLR------RRSRQVIELSEQSAAQMRHVRGA 104 Query: 255 TQALIQSD---------RYGTSIGDSLRVLVSETRSERLMEAEK 289 A+I + G I +S+R+ +R E ++EA++ Sbjct: 105 DMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKR 148 >gnl|CDD|132155 TIGR03111, glyc2_xrt_Gpos1, putative glycosyltransferase TIGR03111. Members of this protein family probable glycosyltransferases of family 2, whose genes are near those for Gram-positive proteins (TIGR03110) related to the proposed exosortase (TIGR02602). Length = 439 Score = 28.9 bits (65), Expect = 1.9 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 2/46 (4%) Query: 113 LNILLVVRLVVPIIFLILGIIWIFGYDKL--LEYPFQLRVGAVILI 156 + +V R++ F +IW F L L YP +L VG+ +LI Sbjct: 305 FSNFMVRRIMYDHTFAFPRMIWYFAMIFLIFLGYPVKLVVGSNLLI 350 >gnl|CDD|181429 PRK08447, PRK08447, ribonucleotide-diphosphate reductase subunit alpha; Validated. Length = 789 Score = 28.2 bits (63), Expect = 3.4 Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 1/37 (2%) Query: 209 EDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245 EDI + VP++ ML + +L+F PNR+V N +R Sbjct: 511 EDIE-RVVPIAIRMLDNVIDLNFYPNRKVKATNLKSR 546 >gnl|CDD|185334 PRK15437, PRK15437, histidine ABC transporter substrate-binding protein HisJ; Provisional. Length = 259 Score = 27.7 bits (61), Expect = 4.7 Identities = 25/90 (27%), Positives = 44/90 (48%), Gaps = 3/90 (3%) Query: 6 FDLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQK 65 FD+ A EL I T + +IPSL + +++ M S+++ + R+Q+I K Sbjct: 51 FDIDLAKELCKRINTQCTFVENPLDALIPSLKAKKIDAIMSSLSITEK--RQQEIAFTDK 108 Query: 66 -DSASSRLRTRDSKSLRNFVKKLNLKAILV 94 +A SRL + ++ V+ L K + V Sbjct: 109 LYAADSRLVVAKNSDIQPTVESLKGKRVGV 138 >gnl|CDD|152308 pfam11872, DUF3392, Protein of unknown function (DUF3392). This family of proteins are functionally uncharacterized. This protein is found in bacteria. Proteins in this family are about 110 amino acids in length. Length = 106 Score = 27.2 bits (61), Expect = 5.5 Identities = 13/40 (32%), Positives = 19/40 (47%) Query: 144 YPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAW 183 F LR A IL+ G+ VW+S + + +SI W Sbjct: 48 RHFLLRTLAFILVCAFGYGLLIVWLSPWLARGLASIPNYW 87 >gnl|CDD|139206 PRK12759, PRK12759, bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional. Length = 410 Score = 26.9 bits (59), Expect = 6.5 Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 5/55 (9%) Query: 100 NKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVI 154 + ++ A F +E + NILLV + + + +G + I GYD L+ R G VI Sbjct: 36 DDVKRAEFYAEVNKNILLVEEHIRTVPQIFVGDVHIGGYDNLMA-----RAGEVI 85 >gnl|CDD|181420 PRK08419, PRK08419, lipid A biosynthesis lauroyl acyltransferase; Reviewed. Length = 298 Score = 26.9 bits (60), Expect = 7.4 Identities = 26/107 (24%), Positives = 44/107 (41%), Gaps = 20/107 (18%) Query: 3 HYFFDLFDATELAVAITTA----VSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQ 58 D + + +TTA +FSL A ++ + + +KS A E++ K+ Sbjct: 103 ENLLDALK-KKRPIIVTTAHYGYWELFSLALAAYYGAVSI--VGRLLKS-APINEMISKR 158 Query: 59 Q----ITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNK 101 + I + K A K L +K+ ILVD+N+V K Sbjct: 159 REQFGIELIDKKGAM--------KELLKALKQGRALGILVDQNVVPK 197 >gnl|CDD|150625 pfam09971, DUF2206, Predicted membrane protein (DUF2206). This domain, found in various hypothetical archaeal proteins, has no known function. Length = 716 Score = 27.0 bits (60), Expect = 7.7 Identities = 15/64 (23%), Positives = 31/64 (48%), Gaps = 8/64 (12%) Query: 108 RSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLE---YPFQLRVGAVILIGYVGFCAP 164 + Y NILL++ ++ LI +I + G+ + YPF + + A+ L+ + + Sbjct: 168 MNYYHNNILLLL-----LLILIALVILLVGFKNIFPKKYYPFAIFIIALSLLWHNSLISN 222 Query: 165 SVWI 168 +W Sbjct: 223 YLWG 226 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.325 0.139 0.390 Gapped Lambda K H 0.267 0.0732 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 5,287,206 Number of extensions: 342961 Number of successful extensions: 1391 Number of sequences better than 10.0: 1 Number of HSP's gapped: 1390 Number of HSP's successfully gapped: 51 Length of query: 329 Length of database: 5,994,473 Length adjustment: 94 Effective length of query: 235 Effective length of database: 3,963,321 Effective search space: 931380435 Effective search space used: 931380435 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 57 (25.7 bits)