RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254780721|ref|YP_003065134.1| pilus component protein
[Candidatus Liberibacter asiaticus str. psy62]
         (329 letters)



>gnl|CDD|152940 pfam12506, DUF3713, Protein of unknown function (DUF3713).  This
           family of proteins is found in bacteria. Proteins in
           this family are typically between 92 and 1225 amino
           acids in length. There is a single completely conserved
           residue S that may be functionally important.
          Length = 116

 Score = 33.2 bits (76), Expect = 0.096
 Identities = 18/83 (21%), Positives = 38/83 (45%), Gaps = 5/83 (6%)

Query: 40  ELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIV 99
           +LE   K +  + ++ +++  TS  K +   + +  D   L++   K+  KA    + +V
Sbjct: 1   KLENYFKDLITKNKVGQEETNTSSDKSTNKLKTKDADVDKLKDKKTKVETKA----KELV 56

Query: 100 NKLRAAGF-RSEYSLNILLVVRL 121
            KL+       +YS  IL+  + 
Sbjct: 57  EKLKVTTAPSPQYSQIILVKSKN 79


>gnl|CDD|182361 PRK10294, PRK10294, 6-phosphofructokinase 2; Provisional.
          Length = 309

 Score = 32.1 bits (73), Expect = 0.23
 Identities = 39/140 (27%), Positives = 58/140 (41%), Gaps = 33/140 (23%)

Query: 138 YDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESG 197
           + +L E   ++  GA+++I   G   P V +  L Q   ++ K+       +  I   SG
Sbjct: 118 FRQLEEQVLEIESGAILVIS--GSLPPGVKLEKLTQLISAAQKQG------IRCIIDSSG 169

Query: 198 ISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQA 257
            ++  AL      IG       E +     ELS L NR +        TQ D VR A Q 
Sbjct: 170 DALSAAL-----AIGN-----IELVKPNQKELSALVNRDL--------TQPDDVRKAAQE 211

Query: 258 LIQSDRYGTSIGDSLRVLVS 277
           L+ S       G + RV+VS
Sbjct: 212 LVNS-------GKAKRVVVS 224


>gnl|CDD|183644 PRK12644, PRK12644, putative monovalent cation/H+ antiporter
           subunit A; Reviewed.
          Length = 965

 Score = 31.4 bits (72), Expect = 0.37
 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 1/47 (2%)

Query: 111 YSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIG 157
           + L ++LV  +VVP   L LG  W     +L + P Q+ VG VI+  
Sbjct: 566 FYLGVILVTLVVVPGAALALGTRWPPDV-RLWDSPAQVVVGLVIIAA 611


>gnl|CDD|163062 TIGR02891, CtaD_CoxA, cytochrome c oxidase, subunit I.  These
           families, as well as archaeal and eukaryotic cytochrome
           c subunit I's are included within the superfamily model,
           pfam00115.
          Length = 506

 Score = 30.3 bits (69), Expect = 0.63
 Identities = 9/28 (32%), Positives = 14/28 (50%)

Query: 1   MPHYFFDLFDATELAVAITTAVSIFSLI 28
           MP      F A  + +A+ T V +F+ I
Sbjct: 290 MPPLALAFFSAATMLIAVPTGVKVFNWI 317


>gnl|CDD|152452 pfam12017, Transposase_37, Transposase protein.  Protein in this
           family are transposases found in insects. This region is
           about 230 amino acids in length and is found associated
           with pfam05485.
          Length = 236

 Score = 30.2 bits (68), Expect = 0.81
 Identities = 17/66 (25%), Positives = 34/66 (51%), Gaps = 7/66 (10%)

Query: 47  SVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAG 106
           +  +E + LR Q+I +L+K+  S R +  +S+ L   + K      +  E  +  L++ G
Sbjct: 15  TTLMENKSLR-QKIRALEKEMHSLRQQLEESQQLEKSLGK------IFTETQIKILKSGG 67

Query: 107 FRSEYS 112
            RS ++
Sbjct: 68  KRSTFN 73


>gnl|CDD|177276 PHA00431, PHA00431, internal virion protein C.
          Length = 746

 Score = 30.1 bits (68), Expect = 0.89
 Identities = 27/85 (31%), Positives = 38/85 (44%), Gaps = 24/85 (28%)

Query: 39  GELEKRMKSVAVER--EILRK---QQI-------TSLQKDS--ASSRLRTRDSKSLRNFV 84
           G  ++R K  A ER  EI+RK   +Q        T L +D   A   LR    K+ RN  
Sbjct: 59  GAYDERRKDKADERSNEIIRKLTPEQRREAIKNGTLLYQDDPYAMEALRF---KTGRN-- 113

Query: 85  KKLNLKAILVDENIVNKLRAAGFRS 109
                 A LVD+ +  K++   FR+
Sbjct: 114 -----AAYLVDDEVAQKIKNGEFRT 133


>gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein;
           Provisional.
          Length = 623

 Score = 29.4 bits (66), Expect = 1.2
 Identities = 30/104 (28%), Positives = 47/104 (45%), Gaps = 18/104 (17%)

Query: 196 SGISIDQ-ALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNA 254
           SG S+   AL R+ E  GG      ++MLL         +RQV   +  +  QM  VR A
Sbjct: 53  SGKSVTALALMRLLEQAGGLVQ--CDKMLLR------RRSRQVIELSEQSAAQMRHVRGA 104

Query: 255 TQALIQSD---------RYGTSIGDSLRVLVSETRSERLMEAEK 289
             A+I  +           G  I +S+R+    +R E ++EA++
Sbjct: 105 DMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKR 148


>gnl|CDD|132155 TIGR03111, glyc2_xrt_Gpos1, putative glycosyltransferase TIGR03111.
            Members of this protein family probable
           glycosyltransferases of family 2, whose genes are near
           those for Gram-positive proteins (TIGR03110) related to
           the proposed exosortase (TIGR02602).
          Length = 439

 Score = 28.9 bits (65), Expect = 1.9
 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 2/46 (4%)

Query: 113 LNILLVVRLVVPIIFLILGIIWIFGYDKL--LEYPFQLRVGAVILI 156
            +  +V R++    F    +IW F    L  L YP +L VG+ +LI
Sbjct: 305 FSNFMVRRIMYDHTFAFPRMIWYFAMIFLIFLGYPVKLVVGSNLLI 350


>gnl|CDD|181429 PRK08447, PRK08447, ribonucleotide-diphosphate reductase subunit
           alpha; Validated.
          Length = 789

 Score = 28.2 bits (63), Expect = 3.4
 Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 1/37 (2%)

Query: 209 EDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
           EDI  + VP++  ML  + +L+F PNR+V   N  +R
Sbjct: 511 EDIE-RVVPIAIRMLDNVIDLNFYPNRKVKATNLKSR 546


>gnl|CDD|185334 PRK15437, PRK15437, histidine ABC transporter substrate-binding
           protein HisJ; Provisional.
          Length = 259

 Score = 27.7 bits (61), Expect = 4.7
 Identities = 25/90 (27%), Positives = 44/90 (48%), Gaps = 3/90 (3%)

Query: 6   FDLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQK 65
           FD+  A EL   I T  +        +IPSL + +++  M S+++  +  R+Q+I    K
Sbjct: 51  FDIDLAKELCKRINTQCTFVENPLDALIPSLKAKKIDAIMSSLSITEK--RQQEIAFTDK 108

Query: 66  -DSASSRLRTRDSKSLRNFVKKLNLKAILV 94
             +A SRL    +  ++  V+ L  K + V
Sbjct: 109 LYAADSRLVVAKNSDIQPTVESLKGKRVGV 138


>gnl|CDD|152308 pfam11872, DUF3392, Protein of unknown function (DUF3392).  This
           family of proteins are functionally uncharacterized.
           This protein is found in bacteria. Proteins in this
           family are about 110 amino acids in length.
          Length = 106

 Score = 27.2 bits (61), Expect = 5.5
 Identities = 13/40 (32%), Positives = 19/40 (47%)

Query: 144 YPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAW 183
             F LR  A IL+   G+    VW+S  + +  +SI   W
Sbjct: 48  RHFLLRTLAFILVCAFGYGLLIVWLSPWLARGLASIPNYW 87


>gnl|CDD|139206 PRK12759, PRK12759, bifunctional
           gluaredoxin/ribonucleoside-diphosphate reductase subunit
           beta; Provisional.
          Length = 410

 Score = 26.9 bits (59), Expect = 6.5
 Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 5/55 (9%)

Query: 100 NKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVI 154
           + ++ A F +E + NILLV   +  +  + +G + I GYD L+      R G VI
Sbjct: 36  DDVKRAEFYAEVNKNILLVEEHIRTVPQIFVGDVHIGGYDNLMA-----RAGEVI 85


>gnl|CDD|181420 PRK08419, PRK08419, lipid A biosynthesis lauroyl acyltransferase;
           Reviewed.
          Length = 298

 Score = 26.9 bits (60), Expect = 7.4
 Identities = 26/107 (24%), Positives = 44/107 (41%), Gaps = 20/107 (18%)

Query: 3   HYFFDLFDATELAVAITTA----VSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQ 58
               D     +  + +TTA      +FSL  A    ++    + + +KS A   E++ K+
Sbjct: 103 ENLLDALK-KKRPIIVTTAHYGYWELFSLALAAYYGAVSI--VGRLLKS-APINEMISKR 158

Query: 59  Q----ITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNK 101
           +    I  + K  A         K L   +K+     ILVD+N+V K
Sbjct: 159 REQFGIELIDKKGAM--------KELLKALKQGRALGILVDQNVVPK 197


>gnl|CDD|150625 pfam09971, DUF2206, Predicted membrane protein (DUF2206).  This
           domain, found in various hypothetical archaeal proteins,
           has no known function.
          Length = 716

 Score = 27.0 bits (60), Expect = 7.7
 Identities = 15/64 (23%), Positives = 31/64 (48%), Gaps = 8/64 (12%)

Query: 108 RSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLE---YPFQLRVGAVILIGYVGFCAP 164
            + Y  NILL++     ++ LI  +I + G+  +     YPF + + A+ L+ +    + 
Sbjct: 168 MNYYHNNILLLL-----LLILIALVILLVGFKNIFPKKYYPFAIFIIALSLLWHNSLISN 222

Query: 165 SVWI 168
            +W 
Sbjct: 223 YLWG 226


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.325    0.139    0.390 

Gapped
Lambda     K      H
   0.267   0.0732    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 5,287,206
Number of extensions: 342961
Number of successful extensions: 1391
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1390
Number of HSP's successfully gapped: 51
Length of query: 329
Length of database: 5,994,473
Length adjustment: 94
Effective length of query: 235
Effective length of database: 3,963,321
Effective search space: 931380435
Effective search space used: 931380435
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 57 (25.7 bits)