HHsearch alignment for GI: 254780722 and conserved domain: COG1459
>COG1459 PulF Type II secretory pathway, component PulF [Cell motility and secretion / Intracellular trafficking and secretion].
Probab=98.99 E-value=1e-07 Score=66.64 Aligned_cols=112 Identities=14% Similarity=0.206 Sum_probs=96.4
Q ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCH-HHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 9999999999999956999899999999924842-899999999986303888899999775348734799999999987
Q gi|254780722|r 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQS 92 (187)
Q Consensus 14 ~~l~~~l~~l~~~l~aG~sl~~Al~~~a~~~~~~-l~~e~~~i~~~~~~G~~~~~al~~~~~~~~~~~~~~~~~~l~~~~ 92 (187)
T Consensus 261 ~~~arf~rtl~~Ll~sGvpl~~aL~i~~~~~~~~~~~~~~~~~~~~v~~G~sl~~al~~------~~~Fp~~~~~mi~~G 334 (397)
T COG1459 261 YALARFARTLGTLLSSGVPLLEALDIAAETVSNAFLRQALEEIIQEVREGGSLSQALEK------TGLFPPLLLQMIAVG 334 (397)
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHHHHH------CCCCHHHHHHHHHHH
T ss_conf 99999999999999789839999999876237499999999999999857569999873------689819999999983
Q ss_pred HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 425746899999999999999999999998643456779
Q gi|254780722|r 93 QLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 (187)
Q Consensus 93 ~~gg~~~~~L~~la~~~~~~~~~~~~~~~~~a~~~~~~~ 131 (187)
T Consensus 335 EesG~L~~mL~~~A~~~~~~~~~~i~~l~~llEP~l~i~ 373 (397)
T COG1459 335 EESGKLDEMLEKVADFYEEEVERKIDKLTSLLEPLLIIF 373 (397)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 431668999999999999999999999999998999999