HHsearch alignment for GI: 254780722 and conserved domain: COG4965
>COG4965 TadB Flp pilus assembly protein TadB [Intracellular trafficking and secretion].
Probab=100.00 E-value=1.1e-34 Score=232.93 Aligned_cols=187 Identities=47% Similarity=0.818 Sum_probs=182.8
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHH
Q ss_conf 91699999999999999999999999956999899999999924842899999999986303888899999775348734
Q gi|254780722|r 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQE 80 (187)
Q Consensus 1 l~~~~~~R~~~~~~~l~~~l~~l~~~l~aG~sl~~Al~~~a~~~~~~l~~e~~~i~~~~~~G~~~~~al~~~~~~~~~~~ 80 (187)
T Consensus 123 ~~~~~~rr~krf~~qlP~aLdlivr~l~aG~~l~dAl~~~~~e~~~Pl~~ef~~i~~~~~~G~~~~~a~~~~~er~p~~e 202 (309)
T COG4965 123 LRSRRARRLKRFGQQLPEALDLIVRALRAGAPLPDALRLAAKETPEPLGTEFTLITDRQQLGIDLPAALLRMYERYPLEE 202 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHH
T ss_conf 99999999999999766999999988657998799999998608985678999999999839984699999998378236
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCH
Q ss_conf 79999999998742574689999999999999999999999864345677999999999999999978789999950800
Q gi|254780722|r 81 VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPR 160 (187)
Q Consensus 81 ~~~~~~~l~~~~~~gg~~~~~L~~la~~~~~~~~~~~~~~~~~a~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 160 (187)
T Consensus 203 l~fl~ivi~iq~~~GGnL~e~l~~ls~vireRkk~~~Kv~AlsaEaRmSA~Il~~lP~~v~~li~~~~P~~l~~lw~dp~ 282 (309)
T COG4965 203 LYFLAIVISIQSRHGGNLSELLDNLSRVIRERKKMKAKVRALSAEARMSAWILGALPLLVGLLIYLLSPDYLSFLWTDPT 282 (309)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCC
T ss_conf 88999999988762878999999999999999999999998634111688999983599999999819378999835997
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 899999999999999999999812769
Q gi|254780722|r 161 GHMLLGVAAAFMLIGIMVMRLMINFDV 187 (187)
Q Consensus 161 G~~~l~~~~~~~~~g~~~i~~~~~~~v 187 (187)
T Consensus 283 G~~ll~~~~~~~~iG~lim~km~~~~~ 309 (309)
T COG4965 283 GRFLLVASAGWELIGILIMRKMLNFDF 309 (309)
T ss_pred CCEEHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 766307999999989999999966779