HHsearch alignment for GI: 254780722 and conserved domain: PRK10573
>PRK10573 type IV pilin biogenesis protein; Provisional.
Probab=99.73 E-value=2.8e-15 Score=113.28 Aligned_cols=136 Identities=15% Similarity=0.277 Sum_probs=118.3
Q ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCC-HHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 999999999999995699989999999992484-2899999999986303888899999775348734799999999987
Q gi|254780722|r 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQS 92 (187)
Q Consensus 14 ~~l~~~l~~l~~~l~aG~sl~~Al~~~a~~~~~-~l~~e~~~i~~~~~~G~~~~~al~~~~~~~~~~~~~~~~~~l~~~~ 92 (187)
T Consensus 58 ~~l~~f~~qLa~ll~aGipl~~aL~~l~~~~~~~~~~~~l~~i~~~l~~G~sls~Al~~~~~~F-----p~~~~~mv~aG 132 (397)
T PRK10573 58 EQSAEIIRQLATLLQAGLPLSEGLQLLAEQHPSKQWQALLQELAHQLEQGVAFSEALLQWPHVF-----PPLYQAMIRTG 132 (397)
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCC-----CHHHHHHHHHH
T ss_conf 7999999999999986999999999998537786899999999999869831899998571628-----87999999998
Q ss_pred HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHC
Q ss_conf 42574689999999999999999999999864345677999999999999999978789999950
Q gi|254780722|r 93 QLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157 (187)
Q Consensus 93 ~~gg~~~~~L~~la~~~~~~~~~~~~~~~~~a~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~ 157 (187)
T Consensus 133 E~sG~L~~~l~~la~~~e~~~~~r~ki~~Al~YP---~~l~~~~i~v~~~ll~~VvP~f~~if~~ 194 (397)
T PRK10573 133 ELTGKLDECCFQLARQQEAQQQLTKKVKKALRYP---LIILAVALLVVVAMLHFVLPEFAAIYQS 194 (397)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---HHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 7107799999999999999999999999999701---9999999999999999997647663134