HHsearch alignment for GI: 254780722 and conserved domain: TIGR02120
>TIGR02120 GspF general secretion pathway protein F; InterPro: IPR011850 This membrane protein is a component of the terminal branch complex of the general secretion pathway (GSP), also known as the "Type II" secretion pathway. The GSP transports proteins (generally virulence-associated cell wall hydrolases) across the outer membrase of the bacterial cell. Transport across the inner membrane is often, but not exclusively handled by the Sec system. GspF nearly always clusters with other GSP subunits. However, some genes from Xylella and Xanthomonas strains are excluded from this entry due to excessive divergence.; GO: 0008565 protein transporter activity, 0015628 protein secretion by the type II secretion system, 0015627 type II protein secretion system complex.
Probab=99.13 E-value=3.8e-09 Score=75.44 Aligned_cols=126 Identities=11% Similarity=0.080 Sum_probs=108.0
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHCCC-HHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHC
Q ss_conf 9999999999995699989999999992484-289999999998630388889999977534873479999999998742
Q gi|254780722|r 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQL 94 (187)
Q Consensus 16 l~~~l~~l~~~l~aG~sl~~Al~~~a~~~~~-~l~~e~~~i~~~~~~G~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~ 94 (187)
T Consensus 281 ~ARfArTL~iL~~SGVPlL~AL~~a~~~~~N~~lr~~v~~a~~~VREG~sLs~AL~------~~~~FPP~l~hmiasGE~ 354 (414)
T TIGR02120 281 TARFARTLSILLSSGVPLLRALQIARETLTNRALRAAVEDAAARVREGGSLSRALR------ASKLFPPLLVHMIASGEK 354 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH------CCCCCHHHHHHHHHHHCC
T ss_conf 99999999999860189999999999998759999999999997225547898862------156643799899877247
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH
Q ss_conf 57468999999999999999999999986434567799999999999999997878
Q gi|254780722|r 95 GGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPG 150 (187)
Q Consensus 95 gg~~~~~L~~la~~~~~~~~~~~~~~~~~a~~~~~~~i~~~~~~~~~~~l~~~~~~ 150 (187)
T Consensus 355 sG~L~~ML~RAAd~~ere~e~~~~~~~~LLEP---lLIv~MGgvVl~IVlAvLlPI 407 (414)
T TIGR02120 355 SGQLETMLERAADNQEREFERRVATLLALLEP---LLIVVMGGVVLFIVLAVLLPI 407 (414)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
T ss_conf 89807789998638899999999999998879---999999999999999998689