HHsearch alignment for GI: 254780722 and conserved domain: TIGR02833
>TIGR02833 spore_III_AB stage III sporulation protein AB; InterPro: IPR014198 This entry represents the stage III sporulation protein AB, which is encoded in a spore formation operon: spoIIIAABCDEFGH that is under sigma G regulation . A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species..
Probab=96.61 E-value=0.053 Score=31.34 Aligned_cols=70 Identities=24% Similarity=0.358 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHH
Q ss_conf 99999999999999999999999569-9989999999992484289999999998630--38888999997753
Q gi|254780722|r 5 IKKRTAKFLDDFPNALDIIVRSVRAG-LPVSDAVAVIVGQSSDPVRSEFRRVIETQHL--GLSLSESISRMVRY 75 (187)
Q Consensus 5 ~~~R~~~~~~~l~~~l~~l~~~l~aG-~sl~~Al~~~a~~~~~~l~~e~~~i~~~~~~--G~~~~~al~~~~~~ 75 (187)
T Consensus 23 ~~~R~~~-Lr~l~~AL~~L~~EI~Y~~TPL~ea~~~iA~~~~~pv~~lF~~~s~~L~~~~~~~v~~Aw~~~l~e 95 (170)
T TIGR02833 23 FKERPRQ-LRQLKNALQSLEAEIVYGHTPLPEAFKKIAKKSPKPVNKLFESASERLKEGEGETVYEAWKKALNE 95 (170)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
T ss_conf 9887999-999999999999730178764689999999741524899999999872268999988899999987