HHsearch alignment of GI: 254780722 and MMDB domain: 3c1q_A_
>3c1q_A (A:) General secretion pathway protein F; type 2 secretion system, T2SS, T4PB, inner membrane, membrane, transmembrane, transport protein; HET: MSE PE5; 1.70A {Vibrio cholerae} PDB: 2vmb_A* 2vma_A*
Probab=99.46 E-value=1.4e-12 Score=96.29 Aligned_cols=111 Identities=18% Similarity=0.264 Sum_probs=101.9
Q ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCC-HHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 9999999999999995699989999999992484-289999999998630388889999977534873479999999998
Q gi|254780722|r 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQ 91 (187)
Q Consensus 13 ~~~l~~~l~~l~~~l~aG~sl~~Al~~~a~~~~~-~l~~e~~~i~~~~~~G~~~~~al~~~~~~~~~~~~~~~~~~l~~~ 91 (187)
..++|++++.++.++++|.|+.+|+..++++..+ +++++++.+.++++.|.++++||.+++.++|. ....++.+
T Consensus 11 ~~~~~~f~~~l~~ll~~G~~l~~al~~~~~~~~~~~l~~~~~~i~~~l~~G~~~~~Al~~~~~~~~~-----~~~~~i~~ 85 (123)
T 3c1q_A 11 TPDLALITRQLATLVQSGXPLEECLRAVAEQSEKPRIRTXLVAVRAKVTEGYTLSDSLGDYPHVFDE-----LFRSXVAA 85 (123)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHTCSCHHHHHHHHHHHHHHHTTCCHHHHHTTCTTTSCH-----HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCH-----HHHHHHHH
T ss_conf 9999999999999998699899999999714412899999999999998455399999875455869-----99999999
Q ss_pred HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 7425746899999999999999999999998643456
Q gi|254780722|r 92 SQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128 (187)
Q Consensus 92 ~~~gg~~~~~L~~la~~~~~~~~~~~~~~~~~a~~~~ 128 (187)
++.||++.++|..+++.++++.+.+.+......+|.+
T Consensus 86 ge~~G~L~~~l~~~a~~~~~~~~~~~~~~~~l~~P~f 122 (123)
T 3c1q_A 86 GEKSGHLDSVLERLADYAENRQKXRSKLQQASENLYF 122 (123)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHHHHHHHTTC-----
T ss_pred HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 9874779999999999999999999999999998850