BLAST/PSIBLAST alignment of GI: 254780722 and GI: 209551763 at iteration 1
>gi|209551763|ref|YP_002283680.1| type II secretion system protein [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 335
>gi|209537519|gb|ACI57454.1| type II secretion system protein [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 335
 Score =  252 bits (644), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 114/184 (61%), Positives = 153/184 (83%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
           LIK+R  KFL++ PNALD+I RS+++GLP++DA+ +I  + ++PV+SEFRRVIE Q +GL
Sbjct: 152 LIKRRQNKFLNELPNALDVITRSIKSGLPLNDAIRLIATEGTEPVKSEFRRVIEAQQVGL 211

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
           S+ ++ +RM  +MPLQEVSFF+ VI++QSQ GGNLSEA+ NLS+++R+R+ MKAKV ALS
Sbjct: 212 SIPDACARMTAHMPLQEVSFFAIVIAIQSQAGGNLSEAIGNLSKVIRERRKMKAKVSALS 271

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
           MEAKASA IIG+LPF V+TLVY TSP YM +L  DPRGH ++GV+A +M IGI VMR M+
Sbjct: 272 MEAKASAVIIGALPFIVATLVYLTSPSYMMILFTDPRGHFIMGVSAIWMSIGIFVMRNMV 331

Query: 184 NFDV 187
           NFD+
Sbjct: 332 NFDI 335