RPSBLAST alignment for GI: 254780722 and conserved domain: pfam00482
>gnl|CDD|144175 pfam00482, GSPII_F, Bacterial type II secretion system protein F domain. The original family covered both the regions found by the current model. The splitting of the family has allowed the related FlaJ_arch (archaeal FlaJ family) to be merged with it. Proteins with this domain in form a platform for the type II secretion machinery, as well as the type IV pili and the archaeal flagellae. This domain seems to show some similarity to pfam00664, but this may just be due to similarities in the TM helices (personal obs: C Yeats). Length = 125
Score = 60.0 bits (146), Expect = 4e-10
Identities = 31/128 (24%), Positives = 62/128 (48%), Gaps = 5/128 (3%)
Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMP 77
L + +RAGLP+ +A+ ++ ++ + +R E +R+ E G SLSE+++R P
Sbjct: 1 FLRQLATLLRAGLPLLEALEILAEEAENGPLREELKRIRERLREGGSLSEALART----P 56
Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
L E + + GGNL+E L L+ L +R+ ++ K+ A + + +
Sbjct: 57 LSEFPPLLVALIAAGESGGNLAEVLERLADYLEERRELRRKILAALLYPLILLVVALLVL 116
Query: 138 FCVSTLVY 145
+ ++
Sbjct: 117 LILLAILL 124