RPS-BLAST 2.2.22 [Sep-27-2009]
Database: mmdb70
33,805 sequences; 4,956,049 total letters
Searching..................................................done
Query= gi|254780722|ref|YP_003065135.1| pilus assembly protein
[Candidatus Liberibacter asiaticus str. psy62]
(187 letters)
>3c1q_A General secretion pathway protein F; type 2 secretion
system, T2SS, T4PB, inner membrane, membrane,
transmembrane, transport protein; HET: MSE PE5; 1.70A
{Vibrio cholerae} PDB: 2vmb_A* 2vma_A* (A:)
Length = 123
Score = 65.3 bits (159), Expect = 5e-12
Identities = 24/126 (19%), Positives = 49/126 (38%), Gaps = 8/126 (6%)
Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQ 59
M K+ + D + V++G P+ + + + QS P +R+ V
Sbjct: 1 MGFAFKRGISTP--DLALITRQLATLVQSGXPLEECLRAVAEQSEKPRIRTXLVAVRAKV 58
Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
G +LS+S+ F + ++ + G+L L L+ +R+ ++K+
Sbjct: 59 TEGYTLSDSLGDYPHVFD----ELFRSXVA-AGEKSGHLDSVLERLADYAENRQKXRSKL 113
Query: 120 QALSME 125
Q S
Sbjct: 114 QQASEN 119
>1hm9_A GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltransferase;
acetyltransferase, bifunctional, crystallography, drug
design; HET: ACO UD1; 1.75A {Streptococcus pneumoniae}
(A:233-468)
Length = 236
Score = 33.0 bits (74), Expect = 0.028
Identities = 18/93 (19%), Positives = 30/93 (32%), Gaps = 1/93 (1%)
Query: 94 LGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMN 153
LG N ALA ++R R N K V +S + +I + +
Sbjct: 1 LGVNDRVALATAESVMRRRINHKHMVNGVSFVNPEATYIDIDVEIAPEVQIEANVILKGQ 60
Query: 154 VLI-NDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
I + V + + G ++ MI
Sbjct: 61 TKIGAETVLTNGTYVVDSTIGAGAVITNSMIEE 93
>3dk5_A Bifunctional protein GLMU; acetyltransferase,
pyrophosphorylase, rossmann-like fold,
LEFT-handed-beta-helix, trimer, cell shape; 2.23A
{Mycobacterium tuberculosis} PDB: 3d8v_A 3d98_A* 3dj4_A
3foq_A 2qkx_A* (A:236-495)
Length = 260
Score = 31.2 bits (69), Expect = 0.10
Identities = 10/86 (11%), Positives = 24/86 (27%)
Query: 101 ALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPR 160
LA L+ L R ++ +++ A+ WI + T+++ + I
Sbjct: 8 QLAELASELNRRVVAAHQLAGVTVVDPATTWIDVDVTIGRDTVIHPGTQLLGRTQIGGRC 67
Query: 161 GHMLLGVAAAFMLIGIMVMRLMINFD 186
+ +
Sbjct: 68 VVGPDTTLTDVAVGDGASVVRTHGSS 93
>2v0h_A Bifunctional protein GLMU; cell WALL, magnesium, cell shape,
transferase, peptidoglycan synthesis, associative
mechanism; 1.79A {Haemophilus influenzae} PDB: 2v0i_A*
2v0j_A* 2v0k_A* 2v0l_A* 2vd4_A* (A:224-456)
Length = 233
Score = 30.0 bits (66), Expect = 0.18
Identities = 13/64 (20%), Positives = 25/64 (39%)
Query: 95 GGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154
G N LA L R ++++ K ++ + + A + G+L + NV
Sbjct: 2 GANNRLQLAALERYFQNKQASKLLLEGVMIYDPARFDLRGTLEHGKDVEIDVNVIIEGNV 61
Query: 155 LIND 158
+ D
Sbjct: 62 KLGD 65
>1hv9_A UDP-N-acetylglucosamine pyrophosphorylase; LEFT-handed
parallel beta-helix, transferase; HET: COA UD1; 2.10A
{Escherichia coli} (A:223-456)
Length = 234
Score = 28.9 bits (63), Expect = 0.45
Identities = 11/65 (16%), Positives = 22/65 (33%)
Query: 94 LGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMN 153
G N L+ L R+ + + K + + + A + G+L + N
Sbjct: 2 EGVNNRLQLSRLERVYQSEQAEKLLLAGVMLRDPARFDLRGTLTHGRDVEIDTNVIIEGN 61
Query: 154 VLIND 158
V +
Sbjct: 62 VTLGH 66
>2qyx_A Uncharacterized protein MJ0159; structural genomics,
unknown function, PSI-2, protein structure initiative;
2.50A {Methanocaldococcus jannaschii DSM2661}
(A:1-104,A:205-238)
Length = 138
Score = 26.6 bits (59), Expect = 1.9
Identities = 7/28 (25%), Positives = 13/28 (46%)
Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIV 41
A DI+ + + GL +SD ++
Sbjct: 53 KYLDEAFDILKEAYKKGLGISDRFGIVE 80
>1t1u_A Choline O-acetyltransferase; choline acetyltransferase;
1.55A {Rattus norvegicus} (A:1-99,A:400-639)
Length = 339
Score = 26.5 bits (58), Expect = 2.6
Identities = 10/65 (15%), Positives = 22/65 (33%), Gaps = 8/65 (12%)
Query: 72 MVRYMPLQEVSFFSTVISVQS-------QLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
Y P E + + S S + + +L ++ + R+ +K A
Sbjct: 270 GACYNPQPE-AITFCISSFHSCKETSSVEFAEAVGASLVDMRDLCSSRQPADSKPPAPKE 328
Query: 125 EAKAS 129
+A+
Sbjct: 329 KARGP 333
>3biq_A FACT complex subunit SPT16; PITA-bread, aminopeptidase,
chromatin, replication, activator, chromosomal protein,
coiled coil, DNA damage; 1.73A {Saccharomyces
cerevisiae} PDB: 3bip_A 3bit_A* (A:1-177)
Length = 177
Score = 26.3 bits (58), Expect = 2.7
Identities = 11/130 (8%), Positives = 38/130 (29%), Gaps = 7/130 (5%)
Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESI--- 69
D F ++++ +++ ++G S+ + ++ L ++
Sbjct: 10 FDVFKKRIELLYSKYNEFEGSPNSLLFVLGSSNAENPYQKTTILHNWLLSYEFPATLIAL 69
Query: 70 -SRMVRYMPLQ-EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
V + + I + ++ L R ++ + K +
Sbjct: 70 VPGKVIIITSSAKAKHLQKAIDLFKDPESKIT--LELWQRNNKEPELNKKLFDDVIALIN 127
Query: 128 ASAWIIGSLP 137
++ +G
Sbjct: 128 SAGKTVGIPE 137
>1wpw_A 3-isopropylmalate dehydrogenase; oxidoreductase; 2.80A
{Sulfolobus tokodaii} (A:)
Length = 336
Score = 25.9 bits (56), Expect = 3.3
Identities = 11/42 (26%), Positives = 15/42 (35%)
Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG 42
+ A L P D+IV G +SD + I G
Sbjct: 194 YSEMYVDAAAANLVRNPQMFDVIVTENVYGDILSDEASQIAG 235
>2hzg_A Mandelate racemase/muconate lactonizing enzyme/enolase
superfamily; structural genomics, predicted mandelate
racemase, PSI; 2.02A {Rhodobacter sphaeroides}
(A:1-126,A:349-401)
Length = 179
Score = 25.3 bits (55), Expect = 5.3
Identities = 14/74 (18%), Positives = 28/74 (37%), Gaps = 4/74 (5%)
Query: 28 RAGLPVSDAVAVIVGQSSD-PVRSEFR---RVIETQHLGLSLSESISRMVRYMPLQEVSF 83
+ A+ ++G+ P + + + GL L + S + RY+ E+
Sbjct: 101 HMLSGIEMALWDLLGRRLSAPAWALLDAEGLIRAPEAPGLGLQVAASALRRYLVETEIRI 160
Query: 84 FSTVISVQSQLGGN 97
+I QL G+
Sbjct: 161 GGQLIYRTPQLEGH 174
>2itb_A TRNA-(MS(2)IO(6)A)-hydroxylase, putative; NP_744337.1,
putative tRNA-(MS(2)IO(6)A)-hydroxylase, structural
genomics, PSI-2; 2.05A {Pseudomonas putida KT2440}
(A:1-89)
Length = 89
Score = 25.1 bits (55), Expect = 7.1
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Query: 98 LSEALANLSRILRDRKN--MKAKVQALSMEAK 127
+ ALA+ +L D KN KA ALS+ AK
Sbjct: 21 IEAALADQETLLIDHKNCEFKAASTALSLIAK 52
>2qmm_A UPF0217 protein AF_1056; alpha/beta knot, SAM, structural
genomics, PSI-2, protein structure initiative; HET:
SAM; 1.85A {Archaeoglobus fulgidus dsm 4304} (A:)
Length = 197
Score = 24.4 bits (53), Expect = 9.5
Identities = 14/62 (22%), Positives = 23/62 (37%), Gaps = 13/62 (20%)
Query: 4 LIKKRTA----KFLDDFPNA--LDIIVRSVRAGLPVSDAV-------AVIVGQSSDPVRS 50
LI A L+D P A +D++ R L +S + +++G S P
Sbjct: 8 LIVGNKAFTQPFSLNDLPGAGRMDVLCRCTSQALFISHGIRRDVEVYLLLLGPPSPPKSI 67
Query: 51 EF 52
Sbjct: 68 LI 69
Database: mmdb70
Posted date: Jun 20, 2010 3:12 AM
Number of letters in database: 4,956,049
Number of sequences in database: 33,805
Lambda K H
0.325 0.136 0.380
Gapped
Lambda K H
0.267 0.0595 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 1,311,576
Number of extensions: 52559
Number of successful extensions: 215
Number of sequences better than 10.0: 1
Number of HSP's gapped: 214
Number of HSP's successfully gapped: 23
Length of query: 187
Length of database: 4,956,049
Length adjustment: 83
Effective length of query: 104
Effective length of database: 2,150,234
Effective search space: 223624336
Effective search space used: 223624336
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (24.1 bits)