RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254780722|ref|YP_003065135.1| pilus assembly protein [Candidatus Liberibacter asiaticus str. psy62] (187 letters) >3c1q_A General secretion pathway protein F; type 2 secretion system, T2SS, T4PB, inner membrane, membrane, transmembrane, transport protein; HET: MSE PE5; 1.70A {Vibrio cholerae} PDB: 2vmb_A* 2vma_A* Length = 123 Score = 41.5 bits (97), Expect = 1e-04 Identities = 22/99 (22%), Positives = 45/99 (45%), Gaps = 6/99 (6%) Query: 27 VRAGLPVSDAVAVIVGQSSDPV-RSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFS 85 V++G+P+ + + + QS P R+ V G +LS+S+ F Sbjct: 25 VQSGMPLEECLRAVAEQSEKPRIRTMLVAVRAKVTEGYTLSDSLGDYPHVFD----ELFR 80 Query: 86 TVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 ++++ + G+L L L+ +R+ M++K+Q S Sbjct: 81 SMVAAGEK-SGHLDSVLERLADYAENRQKMRSKLQQASE 118 >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 36.5 bits (84), Expect = 0.004 Identities = 34/208 (16%), Positives = 61/208 (29%), Gaps = 67/208 (32%) Query: 10 AKFL--------DDFPNALDIIVRSV-----RAGLPVSD--AVAVIVGQSSDPVRSEFRR 54 KFL D ++ L +D A+A + Q +D + + Sbjct: 62 GKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKE 121 Query: 55 VIETQHLGLSLSESISRMVRYMPLQEVS-FFSTVISVQSQL-----G-GN----LSEALA 103 +I+ + R + S F V +QL G GN E L Sbjct: 122 LIKNYI------TARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEE-LR 174 Query: 104 NL--------SRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 +L +++ + L FT +N+L Sbjct: 175 DLYQTYHVLVGDLIK---FSAETLSELI-----------RTTLDAEK--VFTQ--GLNIL 216 Query: 156 --INDP-----RGHMLLGVAAAFMLIGI 176 + +P + + LL + + LIG+ Sbjct: 217 EWLENPSNTPDKDY-LLSIPISCPLIGV 243 Score = 36.1 bits (83), Expect = 0.006 Identities = 37/191 (19%), Positives = 62/191 (32%), Gaps = 69/191 (36%) Query: 12 FLDDFPNALDII----VRSVRA----GLP---VSDAVAVIVGQSS------DPVRSEFRR 54 F A+ ++ VR A LP + D++ G S + + + + Sbjct: 292 FFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQD 351 Query: 55 VI--------ETQHLGLSLSESISRMVRYMPLQEVSFFSTVIS--VQSQLGGNLS----E 100 + + + +SL ++ + V+S QS G NL+ + Sbjct: 352 YVNKTNSHLPAGKQVEISLVNG-AK----------NL---VVSGPPQSLYGLNLTLRKAK 397 Query: 101 ALANL--SRI-LRDRKNMKAKVQA--LSMEA--------KASAWIIGSLP-----FCVST 142 A + L SRI +R K K L + + AS I L F Sbjct: 398 APSGLDQSRIPFSER---KLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKD 454 Query: 143 L---VYFTSPG 150 + VY T G Sbjct: 455 IQIPVYDTFDG 465 Score = 27.6 bits (61), Expect = 1.7 Identities = 39/233 (16%), Positives = 72/233 (30%), Gaps = 103/233 (44%) Query: 9 TAKFLDDFPNALDII--------------VRSVRAGLPVS-----------DAVAVIV-G 42 A+ + F L+I+ + S+ P+S V + G Sbjct: 204 DAEKV--FTQGLNILEWLENPSNTPDKDYLLSI----PISCPLIGVIQLAHYVVTAKLLG 257 Query: 43 QSSDPVRSEFRRVIE--TQH-LGL----SLSESISRMVRYMPLQ---EVSFFSTVISVQS 92 + P E R ++ T H GL +++E+ S ++ ++ V FF I V+ Sbjct: 258 FT--P--GELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFF---IGVRC 310 Query: 93 QLG--------GNLSEALAN--------LSRILRDRKNMKAKVQALSMEAKASAWIIG-- 134 L ++L N LS + L+ E + Sbjct: 311 YEAYPNTSLPPSILEDSLENNEGVPSPMLS------------ISNLTQEQVQD--YVNKT 356 Query: 135 --SLP----FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 LP +S L+N + ++ G + L G + + L Sbjct: 357 NSHLPAGKQVEIS-------------LVNGAKNLVVSGPPQS--LYG-LNLTL 393 >2whn_A PILC, pilus assembly protein PILC; transport, transmembrane, pilus biogenesis, protein transport; 2.05A {Thermus thermophilus} Length = 116 Score = 31.1 bits (70), Expect = 0.16 Identities = 17/96 (17%), Positives = 40/96 (41%), Gaps = 7/96 (7%) Query: 27 VRAGLPVSDAVAVIVGQSSDPV-RSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFS 85 + AGL + A+A++ Q+ + R ++V G++ SE++ + Sbjct: 26 LGAGLTLLQALAILERQTENRKFREILKQVRTDVEGGMAFSEAL-----SKHKIFSRLYV 80 Query: 86 TVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 ++ + G L L L+ L ++ K+++ Sbjct: 81 NLVRA-GETSGGLDLILDRLASFLEKELELRGKIRS 115 >1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 Score = 30.7 bits (68), Expect = 0.18 Identities = 10/33 (30%), Positives = 16/33 (48%), Gaps = 8/33 (24%) Query: 2 KHLIKKRTA--K-FLDDFPNALDIIVRSVRAGL 31 K +KK A K + DD AL +++A + Sbjct: 19 KQALKKLQASLKLYADDSAPAL-----AIKATM 46 Score = 30.4 bits (67), Expect = 0.25 Identities = 10/36 (27%), Positives = 19/36 (52%), Gaps = 10/36 (27%) Query: 111 DRKNMKAKVQA-LSMEAKASAWIIGSLP-FCV-STL 143 +++ +K K+QA L + A SA P + +T+ Sbjct: 18 EKQALK-KLQASLKLYADDSA------PALAIKATM 46 >2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A Length = 103 Score = 27.6 bits (61), Expect = 2.0 Identities = 22/91 (24%), Positives = 33/91 (36%), Gaps = 15/91 (16%) Query: 98 LSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP----FCVSTLVYFTSPGYMN 153 +A L ++L +A +A+ E A + S P + V T T+ GY + Sbjct: 8 AQKAEEELQKVL-----EEASKKAVEAERGAPGAALISYPDAIWWSVETA---TTVGYGD 59 Query: 154 VLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 G VA M GI V L+ Sbjct: 60 RYPVTEEGRK---VAEQVMKAGIEVFALVTA 87 >2qyx_A Uncharacterized protein MJ0159; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Methanocaldococcus jannaschii DSM2661} Length = 238 Score = 26.9 bits (60), Expect = 2.5 Identities = 7/28 (25%), Positives = 13/28 (46%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIV 41 A DI+ + + GL +SD ++ Sbjct: 53 KYLDEAFDILKEAYKKGLGISDRFGIVE 80 >1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 Length = 854 Score = 26.2 bits (57), Expect = 5.0 Identities = 16/109 (14%), Positives = 37/109 (33%), Gaps = 6/109 (5%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 +K+ + L P V G ++ ++ + ++ + R + L L+ Sbjct: 60 LKELQERELARLPK-----VEGAEVGQYLTSRLSGALNRAEGLMEELKDRYVAVDTLVLA 114 Query: 65 LSESISRMVRYMPL-QEVSFFSTVISVQSQLGGNLSEALANLSRILRDR 112 L+E+ + L + +VQ++ + AL L Sbjct: 115 LAEATPGLPGLEALKGALKELRGGRTVQTEHAESTYNALEQYGIDLTRL 163 >3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus} Length = 421 Score = 25.4 bits (55), Expect = 9.1 Identities = 10/35 (28%), Positives = 17/35 (48%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDA 36 K I+K + L+ FP ++ + R G PV+ Sbjct: 327 KKAIEKGWEELLEIFPEGEPLLAQVYRDGNPVNRT 361 >2w9y_A CE-FAR-7, fatty acid/retinol binding protein protein 7, isoform A, confirmed by transcript...; lipid transport; HET: CSX; 1.80A {Caenorhabditis elegans} Length = 140 Score = 25.1 bits (55), Expect = 9.2 Identities = 6/30 (20%), Positives = 10/30 (33%), Gaps = 2/30 (6%) Query: 99 SEALANLSRILRDRKNMKAKVQALSMEAKA 128 L R+ + K ++ LS A Sbjct: 59 HPELG--KRLATVLEGNKKRLDGLSPAAVE 86 >3jyc_A Inward-rectifier K+ channel KIR2.2; A transmembrane pore and A cytoplasmic pore, metal transport; 3.11A {Gallus gallus} Length = 343 Score = 25.3 bits (55), Expect = 9.3 Identities = 8/53 (15%), Positives = 20/53 (37%), Gaps = 4/53 (7%) Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 + + F + T T+ GY + + + + ++G ++ MI Sbjct: 96 VAAFLFSIET---QTTIGYGFRCV-TEECPLAVFMVVVQSIVGCIIDSFMIGA 144 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.325 0.136 0.380 Gapped Lambda K H 0.267 0.0549 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 1,502,212 Number of extensions: 63493 Number of successful extensions: 259 Number of sequences better than 10.0: 1 Number of HSP's gapped: 254 Number of HSP's successfully gapped: 21 Length of query: 187 Length of database: 5,693,230 Length adjustment: 87 Effective length of query: 100 Effective length of database: 3,584,002 Effective search space: 358400200 Effective search space used: 358400200 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 54 (25.0 bits)