RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254780722|ref|YP_003065135.1| pilus assembly protein
[Candidatus Liberibacter asiaticus str. psy62]
(187 letters)
>3c1q_A General secretion pathway protein F; type 2 secretion system, T2SS,
T4PB, inner membrane, membrane, transmembrane, transport
protein; HET: MSE PE5; 1.70A {Vibrio cholerae} PDB:
2vmb_A* 2vma_A*
Length = 123
Score = 41.5 bits (97), Expect = 1e-04
Identities = 22/99 (22%), Positives = 45/99 (45%), Gaps = 6/99 (6%)
Query: 27 VRAGLPVSDAVAVIVGQSSDPV-RSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFS 85
V++G+P+ + + + QS P R+ V G +LS+S+ F
Sbjct: 25 VQSGMPLEECLRAVAEQSEKPRIRTMLVAVRAKVTEGYTLSDSLGDYPHVFD----ELFR 80
Query: 86 TVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
++++ + G+L L L+ +R+ M++K+Q S
Sbjct: 81 SMVAAGEK-SGHLDSVLERLADYAENRQKMRSKLQQASE 118
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 36.5 bits (84), Expect = 0.004
Identities = 34/208 (16%), Positives = 61/208 (29%), Gaps = 67/208 (32%)
Query: 10 AKFL--------DDFPNALDIIVRSV-----RAGLPVSD--AVAVIVGQSSDPVRSEFRR 54
KFL D ++ L +D A+A + Q +D + +
Sbjct: 62 GKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKE 121
Query: 55 VIETQHLGLSLSESISRMVRYMPLQEVS-FFSTVISVQSQL-----G-GN----LSEALA 103
+I+ + R + S F V +QL G GN E L
Sbjct: 122 LIKNYI------TARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEE-LR 174
Query: 104 NL--------SRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
+L +++ + L FT +N+L
Sbjct: 175 DLYQTYHVLVGDLIK---FSAETLSELI-----------RTTLDAEK--VFTQ--GLNIL 216
Query: 156 --INDP-----RGHMLLGVAAAFMLIGI 176
+ +P + + LL + + LIG+
Sbjct: 217 EWLENPSNTPDKDY-LLSIPISCPLIGV 243
Score = 36.1 bits (83), Expect = 0.006
Identities = 37/191 (19%), Positives = 62/191 (32%), Gaps = 69/191 (36%)
Query: 12 FLDDFPNALDII----VRSVRA----GLP---VSDAVAVIVGQSS------DPVRSEFRR 54
F A+ ++ VR A LP + D++ G S + + + +
Sbjct: 292 FFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQD 351
Query: 55 VI--------ETQHLGLSLSESISRMVRYMPLQEVSFFSTVIS--VQSQLGGNLS----E 100
+ + + +SL ++ + V+S QS G NL+ +
Sbjct: 352 YVNKTNSHLPAGKQVEISLVNG-AK----------NL---VVSGPPQSLYGLNLTLRKAK 397
Query: 101 ALANL--SRI-LRDRKNMKAKVQA--LSMEA--------KASAWIIGSLP-----FCVST 142
A + L SRI +R K K L + + AS I L F
Sbjct: 398 APSGLDQSRIPFSER---KLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKD 454
Query: 143 L---VYFTSPG 150
+ VY T G
Sbjct: 455 IQIPVYDTFDG 465
Score = 27.6 bits (61), Expect = 1.7
Identities = 39/233 (16%), Positives = 72/233 (30%), Gaps = 103/233 (44%)
Query: 9 TAKFLDDFPNALDII--------------VRSVRAGLPVS-----------DAVAVIV-G 42
A+ + F L+I+ + S+ P+S V + G
Sbjct: 204 DAEKV--FTQGLNILEWLENPSNTPDKDYLLSI----PISCPLIGVIQLAHYVVTAKLLG 257
Query: 43 QSSDPVRSEFRRVIE--TQH-LGL----SLSESISRMVRYMPLQ---EVSFFSTVISVQS 92
+ P E R ++ T H GL +++E+ S ++ ++ V FF I V+
Sbjct: 258 FT--P--GELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFF---IGVRC 310
Query: 93 QLG--------GNLSEALAN--------LSRILRDRKNMKAKVQALSMEAKASAWIIG-- 134
L ++L N LS + L+ E +
Sbjct: 311 YEAYPNTSLPPSILEDSLENNEGVPSPMLS------------ISNLTQEQVQD--YVNKT 356
Query: 135 --SLP----FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
LP +S L+N + ++ G + L G + + L
Sbjct: 357 NSHLPAGKQVEIS-------------LVNGAKNLVVSGPPQS--LYG-LNLTL 393
>2whn_A PILC, pilus assembly protein PILC; transport, transmembrane, pilus
biogenesis, protein transport; 2.05A {Thermus
thermophilus}
Length = 116
Score = 31.1 bits (70), Expect = 0.16
Identities = 17/96 (17%), Positives = 40/96 (41%), Gaps = 7/96 (7%)
Query: 27 VRAGLPVSDAVAVIVGQSSDPV-RSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFS 85
+ AGL + A+A++ Q+ + R ++V G++ SE++ +
Sbjct: 26 LGAGLTLLQALAILERQTENRKFREILKQVRTDVEGGMAFSEAL-----SKHKIFSRLYV 80
Query: 86 TVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
++ + G L L L+ L ++ K+++
Sbjct: 81 NLVRA-GETSGGLDLILDRLASFLEKELELRGKIRS 115
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.7 bits (68), Expect = 0.18
Identities = 10/33 (30%), Positives = 16/33 (48%), Gaps = 8/33 (24%)
Query: 2 KHLIKKRTA--K-FLDDFPNALDIIVRSVRAGL 31
K +KK A K + DD AL +++A +
Sbjct: 19 KQALKKLQASLKLYADDSAPAL-----AIKATM 46
Score = 30.4 bits (67), Expect = 0.25
Identities = 10/36 (27%), Positives = 19/36 (52%), Gaps = 10/36 (27%)
Query: 111 DRKNMKAKVQA-LSMEAKASAWIIGSLP-FCV-STL 143
+++ +K K+QA L + A SA P + +T+
Sbjct: 18 EKQALK-KLQASLKLYADDSA------PALAIKATM 46
>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer,
ION transport, ionic channel, membrane, transmembrane,
transport; NMR {Escherichia coli} PDB: 2kb1_A
Length = 103
Score = 27.6 bits (61), Expect = 2.0
Identities = 22/91 (24%), Positives = 33/91 (36%), Gaps = 15/91 (16%)
Query: 98 LSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP----FCVSTLVYFTSPGYMN 153
+A L ++L +A +A+ E A + S P + V T T+ GY +
Sbjct: 8 AQKAEEELQKVL-----EEASKKAVEAERGAPGAALISYPDAIWWSVETA---TTVGYGD 59
Query: 154 VLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
G VA M GI V L+
Sbjct: 60 RYPVTEEGRK---VAEQVMKAGIEVFALVTA 87
>2qyx_A Uncharacterized protein MJ0159; structural genomics, unknown
function, PSI-2, protein structure initiative; 2.50A
{Methanocaldococcus jannaschii DSM2661}
Length = 238
Score = 26.9 bits (60), Expect = 2.5
Identities = 7/28 (25%), Positives = 13/28 (46%)
Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIV 41
A DI+ + + GL +SD ++
Sbjct: 53 KYLDEAFDILKEAYKKGLGISDRFGIVE 80
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A
{Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20
c.37.1.20
Length = 854
Score = 26.2 bits (57), Expect = 5.0
Identities = 16/109 (14%), Positives = 37/109 (33%), Gaps = 6/109 (5%)
Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
+K+ + L P V G ++ ++ + ++ + R + L L+
Sbjct: 60 LKELQERELARLPK-----VEGAEVGQYLTSRLSGALNRAEGLMEELKDRYVAVDTLVLA 114
Query: 65 LSESISRMVRYMPL-QEVSFFSTVISVQSQLGGNLSEALANLSRILRDR 112
L+E+ + L + +VQ++ + AL L
Sbjct: 115 LAEATPGLPGLEALKGALKELRGGRTVQTEHAESTYNALEQYGIDLTRL 163
>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural
genomics, PSI-2, protein STRU initiative; HET: AMP;
2.10A {Pyrococcus furiosus}
Length = 421
Score = 25.4 bits (55), Expect = 9.1
Identities = 10/35 (28%), Positives = 17/35 (48%)
Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDA 36
K I+K + L+ FP ++ + R G PV+
Sbjct: 327 KKAIEKGWEELLEIFPEGEPLLAQVYRDGNPVNRT 361
>2w9y_A CE-FAR-7, fatty acid/retinol binding protein protein 7, isoform A,
confirmed by transcript...; lipid transport; HET: CSX;
1.80A {Caenorhabditis elegans}
Length = 140
Score = 25.1 bits (55), Expect = 9.2
Identities = 6/30 (20%), Positives = 10/30 (33%), Gaps = 2/30 (6%)
Query: 99 SEALANLSRILRDRKNMKAKVQALSMEAKA 128
L R+ + K ++ LS A
Sbjct: 59 HPELG--KRLATVLEGNKKRLDGLSPAAVE 86
>3jyc_A Inward-rectifier K+ channel KIR2.2; A transmembrane pore and A
cytoplasmic pore, metal transport; 3.11A {Gallus gallus}
Length = 343
Score = 25.3 bits (55), Expect = 9.3
Identities = 8/53 (15%), Positives = 20/53 (37%), Gaps = 4/53 (7%)
Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
+ + F + T T+ GY + + + + ++G ++ MI
Sbjct: 96 VAAFLFSIET---QTTIGYGFRCV-TEECPLAVFMVVVQSIVGCIIDSFMIGA 144
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.325 0.136 0.380
Gapped
Lambda K H
0.267 0.0549 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 1,502,212
Number of extensions: 63493
Number of successful extensions: 259
Number of sequences better than 10.0: 1
Number of HSP's gapped: 254
Number of HSP's successfully gapped: 21
Length of query: 187
Length of database: 5,693,230
Length adjustment: 87
Effective length of query: 100
Effective length of database: 3,584,002
Effective search space: 358400200
Effective search space used: 358400200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 54 (25.0 bits)