Query gi|254780723|ref|YP_003065136.1| hypothetical protein CLIBASIA_03050 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 137
No_of_seqs 72 out of 74
Neff 4.5
Searched_HMMs 23785
Date Mon May 30 14:02:55 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780723.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1f6g_A Voltage-gated potassium 60.7 8.8 0.00037 18.0 8.2 17 57-73 141-157 (160)
2 2hi2_A Fimbrial protein; type 48.5 14 0.00058 16.8 3.8 29 8-36 3-31 (158)
3 3eff_K Voltage-gated potassium 35.6 22 0.00093 15.5 7.1 12 18-29 78-89 (139)
4 3l36_A GP41 N-peptide; coiled- 34.7 19 0.00078 16.0 2.3 18 56-73 2-19 (47)
5 1zhx_A KES1 protein; oxysterol 29.8 19 0.0008 15.9 1.6 25 66-97 342-366 (438)
6 3l6t_A TRAI, mobilization prot 25.5 12 0.0005 17.2 0.0 15 53-67 235-249 (302)
7 3nr7_A DNA-binding protein H-N 24.9 34 0.0014 14.4 3.4 36 54-93 41-76 (86)
8 1q0v_A Hydrophilic protein; ha 22.9 37 0.0016 14.2 3.2 24 51-74 53-76 (81)
9 1ffk_W Ribosomal protein L37AE 20.5 40 0.0017 13.9 1.9 19 58-76 11-29 (73)
10 1omh_A TRWC protein; protein-D 20.1 42 0.0018 13.8 5.1 41 53-93 232-293 (293)
No 1
>1f6g_A Voltage-gated potassium channel; integral membrane protein, cytoplasmic domains, proton transport, membrane protein; NMR {Streptomyces lividans} SCOP: f.14.1.1
Probab=60.67 E-value=8.8 Score=18.00 Aligned_cols=17 Identities=18% Similarity=0.296 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999996
Q gi|254780723|r 57 RKELREAIQKIELNHKA 73 (137)
Q Consensus 57 Rksvq~sLKelE~rqk~ 73 (137)
.+.+++.++++|+..++
T Consensus 141 ~~~l~~~~~~L~k~l~d 157 (160)
T 1f6g_A 141 TRALHERFDRLERMLDD 157 (160)
T ss_pred HHHHHHHHHHHHHHHHH
T ss_conf 99999999999999987
No 2
>2hi2_A Fimbrial protein; type IV pilin, fiber-forming protein, membrane protein, DNA protein, contractIle protein, cell adhesion; HET: MEA GLA DT6 HTO; 2.30A {Neisseria gonorrhoeae} PDB: 2hil_A* 1ay2_A* 2pil_A*
Probab=48.54 E-value=14 Score=16.78 Aligned_cols=29 Identities=10% Similarity=0.187 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCHHHHHH
Q ss_conf 99999999999999999996306047789
Q gi|254780723|r 8 FLVGLITVSVFCFLYAIFYNVINPGDSKS 36 (137)
Q Consensus 8 ~~~gL~~vavg~laya~~yp~ls~~~~~a 36 (137)
++=.|++|++-|++-++.+|.+..-..++
T Consensus 3 LIELlVVIaIIgILaaia~P~~~~~~~~a 31 (158)
T 2hi2_A 3 LIELMIVIAIVGILAAVALPAYQDYTARA 31 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 42899999999999999999999999999
No 3
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}
Probab=35.64 E-value=22 Score=15.54 Aligned_cols=12 Identities=0% Similarity=-0.036 Sum_probs=4.1
Q ss_pred HHHHHHHHHHHC
Q ss_conf 999999999630
Q gi|254780723|r 18 FCFLYAIFYNVI 29 (137)
Q Consensus 18 g~laya~~yp~l 29 (137)
|...++.+...+
T Consensus 78 Gi~~~~~~i~~i 89 (139)
T 3eff_K 78 GITSFGLVTAAL 89 (139)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
T ss_conf 999999999999
No 4
>3l36_A GP41 N-peptide; coiled-coil, D-peptide inhibitor, de novo protein; HET: DHI DTY DTR CXS; 1.45A {Synthetic} PDB: 2r5b_A* 2r3c_A* 2r5d_A* 3l35_A* 3l37_A* 1czq_A* 1gzl_A 2q3i_A* 2q5u_A 2q7c_A 1w5i_A 1w5l_A 1w5h_A 1w5g_A 2ag3_A* 1u9g_A*
Probab=34.75 E-value=19 Score=15.99 Aligned_cols=18 Identities=33% Similarity=0.567 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999996
Q gi|254780723|r 56 RRKELREAIQKIELNHKA 73 (137)
Q Consensus 56 RRksvq~sLKelE~rqk~ 73 (137)
|-||+||.+.|++.++..
T Consensus 2 RMKQiEDkiEEilSK~yh 19 (47)
T 3l36_A 2 RMKQIEDKIEEIESKQKK 19 (47)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHH
T ss_conf 176888999999998887
No 5
>1zhx_A KES1 protein; oxysterol,sterol binding protein, lipid binding protein; HET: HC3; 1.50A {Saccharomyces cerevisiae} SCOP: d.338.1.1 PDB: 1zht_A* 1zhw_A* 1zhy_A* 1zhz_A* 1zi7_A
Probab=29.84 E-value=19 Score=15.95 Aligned_cols=25 Identities=8% Similarity=0.210 Sum_probs=14.6
Q ss_pred HHHHHHHHHHCCCCCHHHHHHHCCCCCCHHHH
Q ss_conf 99999996223798989999961999789999
Q gi|254780723|r 66 KIELNHKAKIGNTKSIDSLISCSGLPISKQHY 97 (137)
Q Consensus 66 elE~rqk~~~k~~~sl~~rL~QAGL~~s~~~F 97 (137)
.||++|++.+| .-+..|-.|.|+-|
T Consensus 342 ~lEe~QR~~Rk-------~r~~~g~~w~Pr~F 366 (438)
T 1zhx_A 342 ELEETQRELRK-------EEEAKGISWQRRWF 366 (438)
T ss_dssp HHHHHHHHHHH-------HHHHHTCCCCCSSE
T ss_pred HHHHHHHHHHH-------HHHHCCCCCCCCCE
T ss_conf 99999999999-------99885997389767
No 6
>3l6t_A TRAI, mobilization protein TRAI; TRWC superfamily of relaxase enzymes, conjugative relaxase, relaxase, conjugal nickase, hydrolase; HET: CIT; 1.93A {Escherichia coli} PDB: 3l57_A*
Probab=25.53 E-value=12 Score=17.17 Aligned_cols=15 Identities=7% Similarity=0.403 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHH
Q ss_conf 589999999999999
Q gi|254780723|r 53 NTKRRKELREAIQKI 67 (137)
Q Consensus 53 ~~kRRksvq~sLKel 67 (137)
-++||++|++.+++.
T Consensus 235 FS~R~~qI~~~~~~~ 249 (302)
T 3l6t_A 235 FSRRSEQIEKGLAAM 249 (302)
T ss_dssp ---------------
T ss_pred HCCHHHHHHHHHHHC
T ss_conf 384699999999971
No 7
>3nr7_A DNA-binding protein H-NS; dimer, oligomerisation, DNA condensation; 3.70A {Salmonella enterica subsp} PDB: 1lr1_A 1ni8_A
Probab=24.85 E-value=34 Score=14.41 Aligned_cols=36 Identities=17% Similarity=0.269 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCC
Q ss_conf 8999999999999999999622379898999996199978
Q gi|254780723|r 54 TKRRKELREAIQKIELNHKAKIGNTKSIDSLISCSGLPIS 93 (137)
Q Consensus 54 ~kRRksvq~sLKelE~rqk~~~k~~~sl~~rL~QAGL~~s 93 (137)
..||+.-+...++.++|+.+-. -+...|.+.|++.+
T Consensus 41 ~ERreee~~~~~~~~er~~Kl~----~~~e~l~~~Gidp~ 76 (86)
T 3nr7_A 41 NERREEESAAAAEVEERTRKLQ----QYREMLIADGIDPN 76 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHTCCCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHCCCCHH
T ss_conf 9999999999999999999999----99999988599999
No 8
>1q0v_A Hydrophilic protein; has cysteine rich putative zinc finger esential for function;...; stable, non-interacting alpha-helices; NMR {Saccharomyces cerevisiae} SCOP: j.105.1.1 PDB: 1q0w_A
Probab=22.87 E-value=37 Score=14.17 Aligned_cols=24 Identities=8% Similarity=0.210 Sum_probs=17.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 205899999999999999999962
Q gi|254780723|r 51 TANTKRRKELREAIQKIELNHKAK 74 (137)
Q Consensus 51 ~~~~kRRksvq~sLKelE~rqk~~ 74 (137)
.+...=+..|+-||+|.|+.+++.
T Consensus 53 dED~DLKAAIaASL~e~Eeqk~k~ 76 (81)
T 1q0v_A 53 EEDPDLKAAIQESLREAEEAKLRS 76 (81)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 248999999999999999999988
No 9
>1ffk_W Ribosomal protein L37AE; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1jj2_Y 1k73_1* 1k8a_1* 1k9m_1* 1kc8_1* 1kd1_1* 1kqs_Y* 1m1k_1* 1m90_1* 1n8r_1* 1nji_1* 1q7y_1* 1q81_1* 1q82_1* 1q86_1* 1qvf_Y 1qvg_Y 1w2b_Y 3cxc_Y*
Probab=20.54 E-value=40 Score=13.93 Aligned_cols=19 Identities=26% Similarity=0.522 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHC
Q ss_conf 9999999999999996223
Q gi|254780723|r 58 KELREAIQKIELNHKAKIG 76 (137)
Q Consensus 58 ksvq~sLKelE~rqk~~~k 76 (137)
.++.+..++||..|++++.
T Consensus 11 ~slRK~v~kie~~q~~ky~ 29 (73)
T 1ffk_W 11 LKIRVRVRDVEIKHKKKYK 29 (73)
T ss_pred HHHHHHHHHHHHHHCCCCC
T ss_conf 8899999999999617760
No 10
>1omh_A TRWC protein; protein-DNA complex, bacterial conjugation, relaxase, DNA replication, transferase/DNA complex; HET: DNA; 1.95A {Escherichia coli} SCOP: d.89.1.5 PDB: 1osb_A* 1qx0_A* 1s6m_A* 1zm5_A* 2cdm_A
Probab=20.07 E-value=42 Score=13.82 Aligned_cols=41 Identities=20% Similarity=0.170 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHH---------HHHHHHH---HCCC--CCHH-------HHHHHCCCCCC
Q ss_conf 589999999999999---------9999962---2379--8989-------99996199978
Q gi|254780723|r 53 NTKRRKELREAIQKI---------ELNHKAK---IGNT--KSID-------SLISCSGLPIS 93 (137)
Q Consensus 53 ~~kRRksvq~sLKel---------E~rqk~~---~k~~--~sl~-------~rL~QAGL~~s 93 (137)
-++||++|++-+++. +.++... +++| ++++ .++..+|+++|
T Consensus 232 FS~R~~qI~~~~~~~G~~~~~~~~~~r~~A~l~TR~~K~~~~~~~l~~~W~~~a~~~G~D~~ 293 (293)
T 1omh_A 232 FSKRTEQIAEWYAARGLDPNSVSLEQKQAAKVLSRAKKTSVDREALRAEWQATAKELGIDFS 293 (293)
T ss_dssp TCHHHHHHHHHHHHHTCCTTTCCHHHHHHHHHHTCCCCCCCCHHHHHHHHHHHHHHTTCCCC
T ss_pred HCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCC
T ss_conf 57489999999998089988679999999998574778899999999999999998197889
Done!