BLAST/PSIBLAST alignment of GI: 254780723 and GI: 116249985 at iteration 1
>gi|116249985|ref|YP_765823.1| pilus assembly protein [Rhizobium leguminosarum bv. viciae 3841] Length = 335
>gi|115254633|emb|CAK05707.1| putative pilus assembly protein [Rhizobium leguminosarum bv. viciae 3841] Length = 335
 Score = 47.0 bits (110), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 31/109 (28%), Positives = 55/109 (50%), Gaps = 3/109 (2%)

Query: 29  INPGDSKSQDNAKVVRA-DRVIPTANTKRRKELREAIQKIELNHKAKIGNTKSIDSLISC 87
           IN   S   D  KV  A DRV     +KRRK +++ ++ +E     K   T S+ S +  
Sbjct: 41  INRVKSAESDRVKVKAARDRV--QELSKRRKSVQDNLKDLEKRQHEKTKKTVSMKSRLVQ 98

Query: 88  SGLPISKQHYYIGSCVIGFICGVLSLTLSSSFFTFLCVSVSSALVFPRF 136
           +GL I+   +Y+ S V   +  +++L + +S    + ++V + L  PR+
Sbjct: 99  AGLTITAAKFYLISAVFASVLLLIALVVGASLMVMIGIAVVAGLGLPRW 147