BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= gi|254780723|ref|YP_003065136.1| hypothetical protein
CLIBASIA_03050 [Candidatus Liberibacter asiaticus str. psy62]
(137 letters)
Database: nr
14,124,377 sequences; 4,842,793,630 total letters
Searching..................................................done
Results from round 1
>gi|254780723|ref|YP_003065136.1| hypothetical protein CLIBASIA_03050 [Candidatus Liberibacter
asiaticus str. psy62]
gi|254040400|gb|ACT57196.1| hypothetical protein CLIBASIA_03050 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 137
Score = 278 bits (712), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 137/137 (100%), Positives = 137/137 (100%)
Query: 1 MFDVNSWFLVGLITVSVFCFLYAIFYNVINPGDSKSQDNAKVVRADRVIPTANTKRRKEL 60
MFDVNSWFLVGLITVSVFCFLYAIFYNVINPGDSKSQDNAKVVRADRVIPTANTKRRKEL
Sbjct: 1 MFDVNSWFLVGLITVSVFCFLYAIFYNVINPGDSKSQDNAKVVRADRVIPTANTKRRKEL 60
Query: 61 REAIQKIELNHKAKIGNTKSIDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLSSSFF 120
REAIQKIELNHKAKIGNTKSIDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLSSSFF
Sbjct: 61 REAIQKIELNHKAKIGNTKSIDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLSSSFF 120
Query: 121 TFLCVSVSSALVFPRFF 137
TFLCVSVSSALVFPRFF
Sbjct: 121 TFLCVSVSSALVFPRFF 137
>gi|315121887|ref|YP_004062376.1| pilus assembly protein [Candidatus Liberibacter solanacearum
CLso-ZC1]
gi|313495289|gb|ADR51888.1| pilus assembly protein [Candidatus Liberibacter solanacearum
CLso-ZC1]
Length = 328
Score = 133 bits (334), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 74/137 (54%), Positives = 98/137 (71%), Gaps = 3/137 (2%)
Query: 2 FDVNSWFLVGLITVSVFCFLYAIFYNVIN-PGDSKSQDNAKVVRADR--VIPTANTKRRK 58
D+NS+ LVGLI++SVF LY + + S+S+D KV++ + IP+A KRRK
Sbjct: 3 LDINSFLLVGLISISVFFLLYFLLFKTTGLESSSESRDPKKVIKDKKNDTIPSAAVKRRK 62
Query: 59 ELREAIQKIELNHKAKIGNTKSIDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLSSS 118
LR+A+ KIEL+HK K GNTKS+ SLIS SG+P SK+H+YI SCV+G + G++SL L SS
Sbjct: 63 VLRDAMDKIELSHKEKFGNTKSLSSLISYSGIPFSKEHFYIFSCVMGLVFGIISLALFSS 122
Query: 119 FFTFLCVSVSSALVFPR 135
FF LCV +SSALV PR
Sbjct: 123 FFVSLCVCLSSALVVPR 139
>gi|170740617|ref|YP_001769272.1| type II secretion system protein [Methylobacterium sp. 4-46]
gi|168194891|gb|ACA16838.1| type II secretion system protein [Methylobacterium sp. 4-46]
Length = 322
Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 30/140 (21%), Positives = 73/140 (52%), Gaps = 8/140 (5%)
Query: 1 MFDVNSWFLVGLITVSVFCFLYAIFYNVINPGDSKSQDNAKVVRADRVIPTANTK---RR 57
M ++ + GL+ V+ C YA+ ++ P ++++ + + A R P + RR
Sbjct: 1 MTSFDALIVAGLLAVTASCLAYAVVVPLL-PSEARAAKRQQAI-AGRRSPMERVQAVNRR 58
Query: 58 KELREAIQKIELNHKAKIGNTKSIDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLSS 117
+++ ++++++E + S++ I+ +GL I+K +Y+ S V+ + V+ L +S
Sbjct: 59 EQVAKSLKELEAKERKA---RPSLELRITQAGLSITKSQFYVASGVLAGVSLVMGLVMSG 115
Query: 118 SFFTFLCVSVSSALVFPRFF 137
S T + ++ ++ L P++
Sbjct: 116 SPLTAIALAFAAGLGLPQWL 135
>gi|153008063|ref|YP_001369278.1| type II secretion system protein [Ochrobactrum anthropi ATCC 49188]
gi|151559951|gb|ABS13449.1| type II secretion system protein [Ochrobactrum anthropi ATCC 49188]
Length = 337
Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 62/137 (45%), Gaps = 11/137 (8%)
Query: 12 LITVSVFCFLYAIFYNVINPGDSKSQ---------DNAKVVRADRVIPTANTKRRKELRE 62
L V+ YA+FY + D ++ + R++R KRRK+L++
Sbjct: 14 LAVVACAALFYALFYEKLGKKDHAARRFETVRNSGSERAITRSERDRNADIQKRRKQLQD 73
Query: 63 AIQKIELNHKAKIGNTK--SIDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLSSSFF 120
I+ +E K + N K + L++ +GL ++ Q +YI S V F+ ++L +
Sbjct: 74 NIKDLEARQKQREKNQKYPPLRILLAQAGLSLTLQKFYIYSGVAAFLATFIALIFGAPLL 133
Query: 121 TFLCVSVSSALVFPRFF 137
++++ PR+F
Sbjct: 134 FLPGIAIAGFFGLPRWF 150
>gi|328545275|ref|YP_004305384.1| Bacterial type II secretion system protein F domain [polymorphum
gilvum SL003B-26A1]
gi|326415017|gb|ADZ72080.1| Bacterial type II secretion system protein F domain [Polymorphum
gilvum SL003B-26A1]
Length = 339
Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 64/133 (48%), Gaps = 7/133 (5%)
Query: 12 LITVSVFCFLYAIFYNVINPGDSKSQDNAKVVR-----ADRVIPTANTKRRKELREAIQK 66
L S+ +YA+F V++ + Q ++ +DR KRRK +++ +++
Sbjct: 20 LAAFSIGGVIYALFEPVLSGSKRREQRLGQIAARPQAASDRRPVRDAEKRRKSVQDQLKE 79
Query: 67 IELNHKA--KIGNTKSIDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLSSSFFTFLC 124
E KA K N+ ++ + + +GL ++H+ I S V G + +L L+ S L
Sbjct: 80 FEEKQKARQKRANSLTLTNRLEQAGLDWERKHFIIFSIVSGLVFLILGFLLTRSPILTLA 139
Query: 125 VSVSSALVFPRFF 137
++ L FPR++
Sbjct: 140 IAFVGGLGFPRWY 152
>gi|163757631|ref|ZP_02164720.1| hypothetical protein HPDFL43_19512 [Hoeflea phototrophica DFL-43]
gi|162285133|gb|EDQ35415.1| hypothetical protein HPDFL43_19512 [Hoeflea phototrophica DFL-43]
Length = 336
Score = 47.4 bits (111), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 67/141 (47%), Gaps = 16/141 (11%)
Query: 9 LVGLITVSVFCFLYAIFYNVINPGDSKSQDNAKVVRA---DRVIPTAN-------TKRRK 58
++GL +S Y + Y+ I GD K+++ K V+A DR +A KRRK
Sbjct: 11 IIGLAALSAGALGYGVLYSRIE-GDRKAENRVKRVKAAETDRSKASAARDRLAEANKRRK 69
Query: 59 ELREAIQKIELNHKAKIGNTKSIDSL---ISCSGLPISKQHYYIGSCVIGFICGVLSLTL 115
++++++ L+ K K + K+ L I +GLP S +Y+ S V+G + G++
Sbjct: 70 SVQDSLK--TLDEKNKENDKKTSPPLKDKIGQAGLPFSLGQFYMISLVLGLVAGLVGFVA 127
Query: 116 SSSFFTFLCVSVSSALVFPRF 136
S +++ PR+
Sbjct: 128 YGSPLVAAGIAIIFGAGVPRW 148
>gi|218461009|ref|ZP_03501100.1| probable pilus assembly protein [Rhizobium etli Kim 5]
gi|218662450|ref|ZP_03518380.1| probable pilus assembly protein [Rhizobium etli IE4771]
Length = 335
Score = 47.4 bits (111), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 56/109 (51%), Gaps = 3/109 (2%)
Query: 29 INPGDSKSQDNAKVVRA-DRVIPTANTKRRKELREAIQKIELNHKAKIGNTKSIDSLISC 87
IN S D KV A DRV +KRRK +++ ++ +E K T S+ S +
Sbjct: 41 INRVKSAEVDRVKVKAARDRV--QELSKRRKSVQDNLKDLEKRQHEKTRKTLSMKSRLLQ 98
Query: 88 SGLPISKQHYYIGSCVIGFICGVLSLTLSSSFFTFLCVSVSSALVFPRF 136
+GLPIS +Y+ S + + +++ + +S+ + ++V + L PR+
Sbjct: 99 AGLPISVGKFYLISAIFASVLLIVAFIVGASWMVMIGIAVVAGLGLPRW 147
>gi|116249985|ref|YP_765823.1| pilus assembly protein [Rhizobium leguminosarum bv. viciae 3841]
gi|115254633|emb|CAK05707.1| putative pilus assembly protein [Rhizobium leguminosarum bv. viciae
3841]
Length = 335
Score = 47.0 bits (110), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 55/109 (50%), Gaps = 3/109 (2%)
Query: 29 INPGDSKSQDNAKVVRA-DRVIPTANTKRRKELREAIQKIELNHKAKIGNTKSIDSLISC 87
IN S D KV A DRV +KRRK +++ ++ +E K T S+ S +
Sbjct: 41 INRVKSAESDRVKVKAARDRV--QELSKRRKSVQDNLKDLEKRQHEKTKKTVSMKSRLVQ 98
Query: 88 SGLPISKQHYYIGSCVIGFICGVLSLTLSSSFFTFLCVSVSSALVFPRF 136
+GL I+ +Y+ S V + +++L + +S + ++V + L PR+
Sbjct: 99 AGLTITAAKFYLISAVFASVLLLIALVVGASLMVMIGIAVVAGLGLPRW 147
>gi|190889885|ref|YP_001976427.1| pilus assembly protein [Rhizobium etli CIAT 652]
gi|190695164|gb|ACE89249.1| probable pilus assembly protein [Rhizobium etli CIAT 652]
gi|327194690|gb|EGE61536.1| putative pilus assembly protein [Rhizobium etli CNPAF512]
Length = 335
Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 55/109 (50%), Gaps = 3/109 (2%)
Query: 29 INPGDSKSQDNAKVVRA-DRVIPTANTKRRKELREAIQKIELNHKAKIGNTKSIDSLISC 87
IN S D KV A DRV +KRRK +++ ++ +E K T S+ S +
Sbjct: 41 INRVKSAEVDRVKVKAARDRV--QELSKRRKSVQDNLKDLEKRQHEKTRKTLSMKSRLLQ 98
Query: 88 SGLPISKQHYYIGSCVIGFICGVLSLTLSSSFFTFLCVSVSSALVFPRF 136
+GLPIS +Y+ S V + ++ + +S+ + ++V + L PR+
Sbjct: 99 AGLPISVGKFYLISAVFASVLLFVAFVVGASWMVMIGIAVVAGLGLPRW 147
>gi|218516696|ref|ZP_03513536.1| probable pilus assembly protein [Rhizobium etli 8C-3]
Length = 335
Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 55/109 (50%), Gaps = 3/109 (2%)
Query: 29 INPGDSKSQDNAKVVRA-DRVIPTANTKRRKELREAIQKIELNHKAKIGNTKSIDSLISC 87
IN S D KV A DRV +KRRK +++ ++ +E K T S+ S +
Sbjct: 41 INRVKSAEVDRVKVKAARDRV--QELSKRRKSVQDNLKDLEKRQHEKTRKTLSMKSRLLQ 98
Query: 88 SGLPISKQHYYIGSCVIGFICGVLSLTLSSSFFTFLCVSVSSALVFPRF 136
+GLPIS +Y+ S V + ++ + +S+ + ++V + L PR+
Sbjct: 99 AGLPISVGKFYLISAVFASVLLFVAFVVGASWMVMIGIAVVAGLGLPRW 147
>gi|13474664|ref|NP_106233.1| hypothetical protein mlr5603 [Mesorhizobium loti MAFF303099]
gi|14025419|dbj|BAB52019.1| mlr5603 [Mesorhizobium loti MAFF303099]
Length = 337
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/127 (22%), Positives = 60/127 (47%), Gaps = 7/127 (5%)
Query: 18 FCFLYAIFYNVINPGD-----SKSQDNAKVVRADRVIPTANTKRRKELREAIQKIELNHK 72
+ FL+ N G ++ + +V+A R T KRRK +++++++++ K
Sbjct: 24 YAFLFTQISNEKQAGKRLETIKTAETDRSIVKATRDRATDAAKRRKSVQDSLKELDEKQK 83
Query: 73 AKIGNTKS--IDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLSSSFFTFLCVSVSSA 130
K K + + + +G+ +S + +YI S + G V++ + + V ++ A
Sbjct: 84 TKDSAIKKPPLKAQLRQAGMKVSIERFYIYSAICGLALTVVAFVVGAPMLVLPGVLLAGA 143
Query: 131 LVFPRFF 137
L PR+F
Sbjct: 144 LGLPRWF 150
>gi|241207161|ref|YP_002978257.1| type II secretion system protein [Rhizobium leguminosarum bv.
trifolii WSM1325]
gi|240861051|gb|ACS58718.1| type II secretion system protein [Rhizobium leguminosarum bv.
trifolii WSM1325]
Length = 335
Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 56/109 (51%), Gaps = 3/109 (2%)
Query: 29 INPGDSKSQDNAKVVRA-DRVIPTANTKRRKELREAIQKIELNHKAKIGNTKSIDSLISC 87
IN S D KV A DRV +KRRK +++ ++ +E K T S+ + +
Sbjct: 41 INRVKSAESDRVKVKAARDRV--QELSKRRKSVQDNLKDLEKRQHEKTKKTVSMKARLVQ 98
Query: 88 SGLPISKQHYYIGSCVIGFICGVLSLTLSSSFFTFLCVSVSSALVFPRF 136
+GL I+ +Y+ S V + +++L + +S+ + ++V + L PR+
Sbjct: 99 AGLTITAAKFYLISAVFASMLLLVALVVGASWMVMVGIAVVAGLGLPRW 147
>gi|218672463|ref|ZP_03522132.1| probable pilus assembly protein [Rhizobium etli GR56]
Length = 168
Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 54/109 (49%), Gaps = 3/109 (2%)
Query: 29 INPGDSKSQDNAKVVRA-DRVIPTANTKRRKELREAIQKIELNHKAKIGNTKSIDSLISC 87
IN S D KV A DRV +KRRK +++ ++ +E K T S+ S +
Sbjct: 41 INRVKSAEVDRVKVKAARDRVQEL--SKRRKSVQDNLKDLEKRQHEKTRKTLSMKSRLLQ 98
Query: 88 SGLPISKQHYYIGSCVIGFICGVLSLTLSSSFFTFLCVSVSSALVFPRF 136
+GLPIS +Y+ S + + + + +S+ + ++V + L PR+
Sbjct: 99 AGLPISVGKFYLISAIFASVLLFGAFVVGASWMVMIGIAVVAGLGLPRW 147
>gi|260461945|ref|ZP_05810190.1| type II secretion system protein [Mesorhizobium opportunistum
WSM2075]
gi|259032192|gb|EEW33458.1| type II secretion system protein [Mesorhizobium opportunistum
WSM2075]
Length = 337
Score = 43.5 bits (101), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/104 (23%), Positives = 53/104 (50%), Gaps = 2/104 (1%)
Query: 36 SQDNAKVVRADRVIPTANTKRRKELREAIQKIELNHKAKIGNTKS--IDSLISCSGLPIS 93
++ + VV+A R T KRRK +++++++++ K+K K + + + +G+ +
Sbjct: 47 AETDRSVVKATRDRATDAAKRRKSVQDSLKELDEKQKSKDSAIKKPPLKAQLRQAGMKVP 106
Query: 94 KQHYYIGSCVIGFICGVLSLTLSSSFFTFLCVSVSSALVFPRFF 137
+ +YI S + G V++ + V ++ AL PR+F
Sbjct: 107 IERFYIYSAICGIALTVIAFVAGAPLIVLPGVLLAGALGLPRWF 150
>gi|86355868|ref|YP_467760.1| pilus assembly protein [Rhizobium etli CFN 42]
gi|86279970|gb|ABC89033.1| probable pilus assembly protein [Rhizobium etli CFN 42]
Length = 335
Score = 43.1 bits (100), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 54/109 (49%), Gaps = 3/109 (2%)
Query: 29 INPGDSKSQDNAKVVRA-DRVIPTANTKRRKELREAIQKIELNHKAKIGNTKSIDSLISC 87
IN S D AKV A DRV +KRRK +++ ++ +E K T S+ S +
Sbjct: 41 INRVKSAEVDRAKVKAARDRV--QEMSKRRKSVQDNLKDLEKRQNEKTKKTLSMKSRLVQ 98
Query: 88 SGLPISKQHYYIGSCVIGFICGVLSLTLSSSFFTFLCVSVSSALVFPRF 136
+GL ++ +Y+ S + + ++ + +S+ + ++ + L PR+
Sbjct: 99 AGLTVTLTQFYLFSAIFASVLLFMAFIIGASWLVMIGIAFVAGLGLPRW 147
>gi|154250693|ref|YP_001411517.1| type II secretion system protein [Parvibaculum lavamentivorans
DS-1]
gi|154154643|gb|ABS61860.1| type II secretion system protein [Parvibaculum lavamentivorans
DS-1]
Length = 328
Score = 42.4 bits (98), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 62/116 (53%), Gaps = 19/116 (16%)
Query: 2 FDVNSWFLVGLITVSVFCFLYAIFYNVINPGDSKSQD---------NAKVVRADRVIPTA 52
D ++ + G+ ++ C + AI + + G+S+SQ NA++V D + +
Sbjct: 1 MDQSTLMIAGIAVLAALC-IGAIGFLFVG-GESRSQKRVARVTRAGNARLVAVDGEVDNS 58
Query: 53 NTKRRKELREAIQKIE---LNHKAKIGNTKSIDSLISCSGLPISKQHYYIGSCVIG 105
KRRK+++E ++ +E HK ++ S+++ I +GL ++ +++YI S V G
Sbjct: 59 E-KRRKQMQETLKGLEEKQQEHKKRV----SLNTRIERAGLEMTTRNFYIASIVTG 109
>gi|15887569|ref|NP_353250.1| components of type IV pilus [Agrobacterium tumefaciens str. C58]
gi|15155106|gb|AAK86035.1| components of type IV pilus [Agrobacterium tumefaciens str. C58]
Length = 334
Score = 42.0 bits (97), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 64/143 (44%), Gaps = 17/143 (11%)
Query: 8 FLVGLITVSVFCFLYAIFYNVINPGDSKSQDNAKVVRA------------DRVIPTANTK 55
L L+ +S YA + I + K+ K V+A DRV +K
Sbjct: 7 LLAVLVAISAGALAYAFLFQQIEV-EKKTTSRFKRVQAAETDHTNIKAARDRV--QELSK 63
Query: 56 RRKELREAIQKIE--LNHKAKIGNTKSIDSLISCSGLPISKQHYYIGSCVIGFICGVLSL 113
RRK ++++++ +E N KAK S+ + +GL IS + +++ S +SL
Sbjct: 64 RRKSMQDSLRDMEKKQNEKAKKAKNVSLRDKLVQAGLTISVRQFHLLSAGAAACAAFISL 123
Query: 114 TLSSSFFTFLCVSVSSALVFPRF 136
S T L ++V +AL PR+
Sbjct: 124 IYGLSLLTALPIAVVAALGLPRW 146
>gi|304320651|ref|YP_003854294.1| hypothetical protein PB2503_05392 [Parvularcula bermudensis
HTCC2503]
gi|303299553|gb|ADM09152.1| hypothetical protein PB2503_05392 [Parvularcula bermudensis
HTCC2503]
Length = 330
Score = 41.6 bits (96), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 32/143 (22%), Positives = 61/143 (42%), Gaps = 9/143 (6%)
Query: 2 FDVNSWFLVGLITVSVFCFLYAIF-YNVINPGDSKSQD---NAKVVRADRVIPTANTKRR 57
D NS +G+ V++ +A+ ++ + + Q NAK + RR
Sbjct: 3 LDQNSLIALGIGLVAIVGLAFALLGFDGGGATNKRVQSLSGNAKQAKRKTSAKEQTRDRR 62
Query: 58 KELREAIQKIELNHKAKIGNTK---SIDSLISCSGLPISKQHYYIGSCVIGFICGVLSLT 114
K + ++++KIE K K N K S+D LI +G S + ++ S ++ + +
Sbjct: 63 KTISDSLKKIE--DKQKEANQKKKVSLDKLIEQAGFDFSVRDFWTASAIVAVVMIGIGYV 120
Query: 115 LSSSFFTFLCVSVSSALVFPRFF 137
+ L + + L PR+F
Sbjct: 121 SGQNALVILAMGIVGGLGIPRWF 143
>gi|209551763|ref|YP_002283680.1| type II secretion system protein [Rhizobium leguminosarum bv.
trifolii WSM2304]
gi|209537519|gb|ACI57454.1| type II secretion system protein [Rhizobium leguminosarum bv.
trifolii WSM2304]
Length = 335
Score = 40.4 bits (93), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 51/104 (49%), Gaps = 3/104 (2%)
Query: 34 SKSQDNAKVVRA-DRVIPTANTKRRKELREAIQKIELNHKAKIGNTKSIDSLISCSGLPI 92
S D KV A DRV +KRRK +++ ++ +E K T ++ S + +GL I
Sbjct: 46 SAESDRVKVKAARDRV--QEMSKRRKSVQDNLKDLEKRQHEKTKKTLTMKSRLVQAGLTI 103
Query: 93 SKQHYYIGSCVIGFICGVLSLTLSSSFFTFLCVSVSSALVFPRF 136
+ +YI S + + +++ + S + ++V + L PR+
Sbjct: 104 TVGKFYIISAIFACVLLLMAFLIGVSLMVIIGIAVVAGLGLPRW 147
>gi|222147178|ref|YP_002548135.1| component of type IV pilus [Agrobacterium vitis S4]
gi|221734168|gb|ACM35131.1| component of type IV pilus [Agrobacterium vitis S4]
Length = 334
Score = 40.4 bits (93), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 54/106 (50%), Gaps = 4/106 (3%)
Query: 33 DSKSQDNAKVVRADRVIPTANTKRRKELREAIQKIE--LNHKAKIGNTKSIDSLISCSGL 90
++++ K V DRV +KRRK +++ +++IE N K K +++S+ + +GL
Sbjct: 43 NAEADTAKKQVARDRV--QELSKRRKSVQDTLKEIERKQNEKNKKISSQSLKQRLGQTGL 100
Query: 91 PISKQHYYIGSCVIGFICGVLSLTLSSSFFTFLCVSVSSALVFPRF 136
+S + I S +G + L L S F L ++ ++ PR+
Sbjct: 101 DVSLIQFSIASTTLGLVFFCLCFVLGMSLFVSLGIAFTAGAGLPRW 146
>gi|239833233|ref|ZP_04681562.1| type II secretion system protein [Ochrobactrum intermedium LMG
3301]
gi|239825500|gb|EEQ97068.1| type II secretion system protein [Ochrobactrum intermedium LMG
3301]
Length = 336
Score = 40.0 bits (92), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 31/139 (22%), Positives = 60/139 (43%), Gaps = 11/139 (7%)
Query: 10 VGLITVSVFCFLYAIFYNVINPGD---------SKSQDNAKVVRADRVIPTANTKRRKEL 60
V L ++ YA+FY + D S + R++R KRRK+L
Sbjct: 11 VVLAVIACAALFYALFYEKLGKKDHAARRFETVRNSGSERAITRSERDRNADIQKRRKQL 70
Query: 61 REAIQKIELNHKAKIGNTK--SIDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLSSS 118
++ I+ +E K + N K + L++ +GL ++ Q +Y+ S F ++L +
Sbjct: 71 QDNIKDLEARQKQREKNQKYPPLRILLTQAGLTLTLQKFYLYSGAAAFFATFVALLFGAP 130
Query: 119 FFTFLCVSVSSALVFPRFF 137
++++ PR+F
Sbjct: 131 LLFLPGIAIAGFFGLPRWF 149
>gi|227823975|ref|YP_002827948.1| putative type II/IV secretion system protein TadB, Flp pilus
assembly protein TadB [Sinorhizobium fredii NGR234]
gi|227342977|gb|ACP27195.1| putative type II/IV secretion system protein TadB, Flp pilus
assembly protein TadB [Sinorhizobium fredii NGR234]
Length = 336
Score = 39.7 bits (91), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 60/129 (46%), Gaps = 16/129 (12%)
Query: 22 YAIFYNVINPGDSKSQ-----------DNAKVVRA-DRVIPTANTKRRKELREAIQKIEL 69
Y + Y+ I D K++ D AK+ A DRV +KRRK L+++++++E
Sbjct: 24 YGVLYSRIE-NDKKAEGRLRRVSAAETDRAKIKAARDRV--NEMSKRRKSLQDSLKELEK 80
Query: 70 NHKAKIGNTK-SIDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLSSSFFTFLCVSVS 128
+ K N S+ + + L IS +Y+ S + G ++ L + + V++
Sbjct: 81 KQQEKSANAAPSMKKRLVQANLSISPAQFYVFSVIFGLFALIVVLIAGAGLWIAGGVALI 140
Query: 129 SALVFPRFF 137
+A PR+
Sbjct: 141 TAAGLPRWL 149
>gi|296444391|ref|ZP_06886356.1| Type II secretion system F domain protein [Methylosinus
trichosporium OB3b]
gi|296258038|gb|EFH05100.1| Type II secretion system F domain protein [Methylosinus
trichosporium OB3b]
Length = 322
Score = 39.3 bits (90), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 58/121 (47%), Gaps = 11/121 (9%)
Query: 2 FDVNSWFLVGLITVSVFCFLYAIFYNVINPGDSKSQDNAKVVRAD----RVIPTAN-TKR 56
D S L ++V +YA+ Y ++ GD K+Q + A R +A+ KR
Sbjct: 1 MDRQSLIGATLAALAVGGVMYAVVYPYLS-GDFKAQKRTAALMASGDRRREGRSADPAKR 59
Query: 57 RKELREAIQKIELNHKAKIGNTKSIDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLS 116
RK ++++++ IE K +++ I+ +GL +S+ + IG+ V G + S L+
Sbjct: 60 RKMIQDSLKDIETKAK-----QITLEQRIAQAGLAVSRSLFMIGAGVAGLFAALFSFILN 114
Query: 117 S 117
Sbjct: 115 Q 115
>gi|110636325|ref|YP_676533.1| type II secretion system protein [Mesorhizobium sp. BNC1]
gi|110287309|gb|ABG65368.1| type II secretion system protein [Chelativorans sp. BNC1]
Length = 337
Score = 38.5 bits (88), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 47/104 (45%), Gaps = 2/104 (1%)
Query: 35 KSQDNAKVVRADRVIPTANTKRRKELREAIQKIELNHK--AKIGNTKSIDSLISCSGLPI 92
++Q VVRA R KRR+ ++E+++ IE K + + I +GL +
Sbjct: 46 RAQIEGNVVRAARDRAAEIAKRRRSIQESLKDIETRQKDQDRFLKRPPLKIQIRQAGLEM 105
Query: 93 SKQHYYIGSCVIGFICGVLSLTLSSSFFTFLCVSVSSALVFPRF 136
S + +YI S V+G + +++ + V+ PR+
Sbjct: 106 SMERFYILSAVVGLLFVIVTFIAGAPLLAVAGAMVAGFFGAPRW 149
>gi|302843015|ref|XP_002953050.1| hypothetical protein VOLCADRAFT_105763 [Volvox carteri f.
nagariensis]
gi|300261761|gb|EFJ45972.1| hypothetical protein VOLCADRAFT_105763 [Volvox carteri f.
nagariensis]
Length = 135
Score = 38.5 bits (88), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 31/55 (56%), Gaps = 5/55 (9%)
Query: 82 DSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLSSSFFTFLCVSVSSALVFPRF 136
D L++C + KQ I + ++G ICGVL LT F TFL + + S +VF R
Sbjct: 37 DELLTC--VHWQKQ---ITAAILGLICGVLPLTGLEGFVTFLALQLVSTMVFYRM 86
>gi|307320430|ref|ZP_07599847.1| Type II secretion system F domain protein [Sinorhizobium meliloti
AK83]
gi|306893996|gb|EFN24765.1| Type II secretion system F domain protein [Sinorhizobium meliloti
AK83]
Length = 336
Score = 38.1 bits (87), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 51/104 (49%), Gaps = 1/104 (0%)
Query: 34 SKSQDNAKVVRADRVIPTANTKRRKELREAIQKIELNHKAKIGNT-KSIDSLISCSGLPI 92
S S+ + ++A R +KRRK ++++++++E + K NT S+ + +GL I
Sbjct: 45 SASETDRTKIKAARDRVNEMSKRRKSVQDSLKELEKKQQEKSANTAPSMKKRLLQAGLSI 104
Query: 93 SKQHYYIGSCVIGFICGVLSLTLSSSFFTFLCVSVSSALVFPRF 136
S +Y+ S + G ++ L + V++ A PR+
Sbjct: 105 SLAQFYLFSALFGLFAFLVVLLAGAGLLIAAGVALIGAAGLPRW 148
>gi|15963898|ref|NP_384251.1| hypothetical protein SMc02821 [Sinorhizobium meliloti 1021]
gi|307315795|ref|ZP_07595309.1| Type II secretion system F domain protein [Sinorhizobium meliloti
BL225C]
gi|15073073|emb|CAC41532.1| Hypothetical transmembrane protein [Sinorhizobium meliloti 1021]
gi|306898563|gb|EFN29236.1| Type II secretion system F domain protein [Sinorhizobium meliloti
BL225C]
Length = 336
Score = 38.1 bits (87), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 51/104 (49%), Gaps = 1/104 (0%)
Query: 34 SKSQDNAKVVRADRVIPTANTKRRKELREAIQKIELNHKAKIGNT-KSIDSLISCSGLPI 92
S S+ + ++A R +KRRK ++++++++E + K NT S+ + +GL I
Sbjct: 45 SASETDRTKIKAARDRVNEMSKRRKSVQDSLKELEKKQQEKSANTAPSMKKRLLQAGLSI 104
Query: 93 SKQHYYIGSCVIGFICGVLSLTLSSSFFTFLCVSVSSALVFPRF 136
S +Y+ S + G ++ L + V++ A PR+
Sbjct: 105 SLAQFYLFSALFGLFAFLVVLLAGAGLLIAAGVALIGAAGLPRW 148
>gi|293342807|ref|XP_002725333.1| PREDICTED: olfactory receptor Olr1657-like [Rattus norvegicus]
Length = 317
Score = 37.0 bits (84), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 35/72 (48%), Gaps = 8/72 (11%)
Query: 12 LITVSVFCFLYAIFYNVINPGDSKSQDNAK------VVRADRVIPTANTKRRKELREAIQ 65
LI VS+F I Y + P +S SQD K + V P T R K+++EAI+
Sbjct: 245 LIVVSLF--YGTIIYMYLQPANSYSQDQGKFLTLFYTIVTPSVNPLIYTLRNKDIKEAIK 302
Query: 66 KIELNHKAKIGN 77
K+ L +K G
Sbjct: 303 KVILKAVSKKGQ 314
>gi|325291655|ref|YP_004277519.1| components of type IV pilus [Agrobacterium sp. H13-3]
gi|325059508|gb|ADY63199.1| components of type IV pilus [Agrobacterium sp. H13-3]
Length = 334
Score = 37.0 bits (84), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 34/149 (22%), Positives = 61/149 (40%), Gaps = 17/149 (11%)
Query: 2 FDVNSWFLVGLITVSVFCFLYAIFYNVINPGDSKSQDNAKVVRA------------DRVI 49
D L L+ +S YA + I + K+ K V+A DRV
Sbjct: 1 MDPTILLLAALVAISAGALAYAFLFQQIEV-EKKTTSRVKRVKAAETDHANIKAARDRVQ 59
Query: 50 PTANTKRRKELREAIQKIE--LNHKAKIGNTKSIDSLISCSGLPISKQHYYIGSCVIGFI 107
KRRK ++++++++E + KAK + + +GL +S + +++ S
Sbjct: 60 ELG--KRRKSMQDSLREMEKKQSEKAKKAKNVGLREKLVQAGLQLSVRQFHLLSAGAAAF 117
Query: 108 CGVLSLTLSSSFFTFLCVSVSSALVFPRF 136
V++L S L + AL PR+
Sbjct: 118 SVVIALLYGLSLLIALLIGAVVALGLPRW 146
>gi|194040001|ref|XP_001928084.1| PREDICTED: olfactory receptor 2W1-like [Sus scrofa]
Length = 361
Score = 36.6 bits (83), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 45/99 (45%), Gaps = 19/99 (19%)
Query: 12 LITVSVFCFLYAIFYNVINPGDSKSQDNAKVVRA--DRVIPTAN----TKRRKELREAIQ 65
LI VS+F + Y I PG+S +QD K++ V P N T R KE + A++
Sbjct: 242 LIVVSLF--YGTVIYMYIQPGNSPNQDEGKLLSVFYSTVTPAMNPLIYTLRNKEFKGAVK 299
Query: 66 KIELNHKAKIGNTKSIDSLISCSGLPISKQHYYIGSCVI 104
+ L K K+ + DS S Q + I CV+
Sbjct: 300 R--LIRKKKVLQKQYTDS---------SSQQFSIWKCVL 327
>gi|301783425|ref|XP_002927141.1| PREDICTED: putative olfactory receptor 2W6-like [Ailuropoda
melanoleuca]
Length = 312
Score = 36.6 bits (83), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 34/62 (54%), Gaps = 8/62 (12%)
Query: 12 LITVSVFCFLYAIFYNVINPGDSKSQDNAKVVRADRVI--PTAN----TKRRKELREAIQ 65
LI VSVF +I Y + P D+ SQD K + I P+ N T R K+++EA++
Sbjct: 245 LIVVSVF--YGSIIYMYLQPADAYSQDQGKFLTLSYTIVTPSVNPLIYTLRNKDVKEAVR 302
Query: 66 KI 67
K+
Sbjct: 303 KV 304
>gi|281345992|gb|EFB21576.1| hypothetical protein PANDA_016828 [Ailuropoda melanoleuca]
Length = 307
Score = 36.2 bits (82), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 34/62 (54%), Gaps = 8/62 (12%)
Query: 12 LITVSVFCFLYAIFYNVINPGDSKSQDNAKVVRADRVI--PTAN----TKRRKELREAIQ 65
LI VSVF +I Y + P D+ SQD K + I P+ N T R K+++EA++
Sbjct: 245 LIVVSVF--YGSIIYMYLQPADAYSQDQGKFLTLSYTIVTPSVNPLIYTLRNKDVKEAVR 302
Query: 66 KI 67
K+
Sbjct: 303 KV 304
>gi|304392380|ref|ZP_07374321.1| type II secretion system protein [Ahrensia sp. R2A130]
gi|303295484|gb|EFL89843.1| type II secretion system protein [Ahrensia sp. R2A130]
Length = 332
Score = 36.2 bits (82), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 45/94 (47%), Gaps = 9/94 (9%)
Query: 22 YAIFYNVINPGDSKSQDNAKVVRADRVIPTA------NTKRRKELREAIQK--IELNHKA 73
YA+ YN I D KS++ + ++ D+ + K+R++ REA K + K
Sbjct: 22 YALLYNSI-ASDKKSKERMQRLQMDKKTKMKVESRKMDEKQRRKSREAALKNVDDQKSKG 80
Query: 74 KIGNTKSIDSLISCSGLPISKQHYYIGSCVIGFI 107
K ++ ++ +G IS +Y+ S VIG +
Sbjct: 81 KTAGKETFREILEQAGFTISLGKFYVVSAVIGIL 114
>gi|311259889|ref|XP_003128265.1| PREDICTED: putative olfactory receptor 2W6-like [Sus scrofa]
gi|311259899|ref|XP_003128264.1| PREDICTED: putative olfactory receptor 2W6-like [Sus scrofa]
Length = 309
Score = 36.2 bits (82), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 6/57 (10%)
Query: 17 VFCFLYAIFYNVINPGDSKSQDNAKVVRA--DRVIPTAN----TKRRKELREAIQKI 67
VF F +I Y + PG+S SQD K + + V P N T R KE++ A++K+
Sbjct: 248 VFLFYGSIIYMYMQPGNSSSQDQGKFLTLFYNLVTPMLNPLIYTLRNKEVKGALKKV 304
>gi|114573663|ref|XP_001141172.1| PREDICTED: olfactory receptor 2G3-like [Pan troglodytes]
Length = 309
Score = 35.8 bits (81), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 6/57 (10%)
Query: 17 VFCFLYAIFYNVINPGDSKSQDNAKVVRA--DRVIPTAN----TKRRKELREAIQKI 67
V F I Y + P DS +QD K + V PT N T R K+++EA++K+
Sbjct: 248 VIIFYGTIIYRYLQPSDSYAQDQGKFISLFYTMVTPTLNPIIYTLRNKDMKEALRKL 304
>gi|222084473|ref|YP_002543002.1| pilus assembly protein [Agrobacterium radiobacter K84]
gi|221721921|gb|ACM25077.1| pilus assembly protein [Agrobacterium radiobacter K84]
Length = 335
Score = 35.4 bits (80), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 50/103 (48%), Gaps = 9/103 (8%)
Query: 38 DNAKV-VRADRVIPTANTKRRKELREAIQKIELNHKAKIGNTKSIDSL---ISCSGLPIS 93
D KV V DRV +KRRK +++ ++ +E K ++ NTK SL + +GL ++
Sbjct: 50 DRTKVKVARDRV--QEMSKRRKSVQDTLKDLE---KRQVENTKKKQSLKARLVQAGLSLT 104
Query: 94 KQHYYIGSCVIGFICGVLSLTLSSSFFTFLCVSVSSALVFPRF 136
+Y+ S + G V++ + + ++A PR+
Sbjct: 105 PARFYVFSVLFGLFVMVVAFLFGAPLAVIAGLPFAAAFGLPRW 147
>gi|297743354|emb|CBI36221.3| unnamed protein product [Vitis vinifera]
Length = 1362
Score = 34.7 bits (78), Expect = 4.1, Method: Composition-based stats.
Identities = 26/80 (32%), Positives = 38/80 (47%), Gaps = 21/80 (26%)
Query: 7 WFLVGLITVSVFCFLYAIFY----NVINPGDS------KSQDNAKVVRADRVIPTANTKR 56
W+ +G + F F++ IFY N +NP + + DNAK TA T+R
Sbjct: 686 WYWIGAGALLGFIFVFNIFYTLCLNYLNPFEKPQAVIIEESDNAK---------TATTER 736
Query: 57 RKELREAIQKIELNHKAKIG 76
+++ EAI E NH K G
Sbjct: 737 GEQMVEAIA--EANHNKKKG 754
>gi|70954100|ref|XP_746113.1| uga suppressor tRNA-associated antigenic protein, [Plasmodium
chabaudi chabaudi]
gi|56526630|emb|CAH78766.1| uga suppressor tRNA-associated antigenic protein, putative
[Plasmodium chabaudi chabaudi]
Length = 551
Score = 34.3 bits (77), Expect = 6.0, Method: Composition-based stats.
Identities = 27/75 (36%), Positives = 35/75 (46%), Gaps = 9/75 (12%)
Query: 31 PGDSKSQDNAKVVRADRVIPTANTKRRKELREAIQKIELNHKAKIGNTKSIDSLISCSGL 90
PGD + + +VVR +++I N KR K+ +K IGN D SCS
Sbjct: 435 PGDDDLKLDEEVVRVNKLIGFENLKR------MYYKLNAKNKIVIGNKIFHDFGSSCSNY 488
Query: 91 PISKQHYYIGSCVIG 105
P S Y SCVIG
Sbjct: 489 PYS---YIAFSCVIG 500
Searching..................................................done
Results from round 2
>gi|254780723|ref|YP_003065136.1| hypothetical protein CLIBASIA_03050 [Candidatus Liberibacter
asiaticus str. psy62]
gi|254040400|gb|ACT57196.1| hypothetical protein CLIBASIA_03050 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 137
Score = 176 bits (445), Expect = 1e-42, Method: Composition-based stats.
Identities = 137/137 (100%), Positives = 137/137 (100%)
Query: 1 MFDVNSWFLVGLITVSVFCFLYAIFYNVINPGDSKSQDNAKVVRADRVIPTANTKRRKEL 60
MFDVNSWFLVGLITVSVFCFLYAIFYNVINPGDSKSQDNAKVVRADRVIPTANTKRRKEL
Sbjct: 1 MFDVNSWFLVGLITVSVFCFLYAIFYNVINPGDSKSQDNAKVVRADRVIPTANTKRRKEL 60
Query: 61 REAIQKIELNHKAKIGNTKSIDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLSSSFF 120
REAIQKIELNHKAKIGNTKSIDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLSSSFF
Sbjct: 61 REAIQKIELNHKAKIGNTKSIDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLSSSFF 120
Query: 121 TFLCVSVSSALVFPRFF 137
TFLCVSVSSALVFPRFF
Sbjct: 121 TFLCVSVSSALVFPRFF 137
>gi|153008063|ref|YP_001369278.1| type II secretion system protein [Ochrobactrum anthropi ATCC 49188]
gi|151559951|gb|ABS13449.1| type II secretion system protein [Ochrobactrum anthropi ATCC 49188]
Length = 337
Score = 135 bits (339), Expect = 2e-30, Method: Composition-based stats.
Identities = 32/141 (22%), Positives = 63/141 (44%), Gaps = 11/141 (7%)
Query: 8 FLVGLITVSVFCFLYAIFYNVINPGDSKSQD---------NAKVVRADRVIPTANTKRRK 58
+ L V+ YA+FY + D ++ + R++R KRRK
Sbjct: 10 MFIVLAVVACAALFYALFYEKLGKKDHAARRFETVRNSGSERAITRSERDRNADIQKRRK 69
Query: 59 ELREAIQKIELNHKAKIGNTK--SIDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLS 116
+L++ I+ +E K + N K + L++ +GL ++ Q +YI S V F+ ++L
Sbjct: 70 QLQDNIKDLEARQKQREKNQKYPPLRILLAQAGLSLTLQKFYIYSGVAAFLATFIALIFG 129
Query: 117 SSFFTFLCVSVSSALVFPRFF 137
+ ++++ PR+F
Sbjct: 130 APLLFLPGIAIAGFFGLPRWF 150
>gi|328545275|ref|YP_004305384.1| Bacterial type II secretion system protein F domain [polymorphum
gilvum SL003B-26A1]
gi|326415017|gb|ADZ72080.1| Bacterial type II secretion system protein F domain [Polymorphum
gilvum SL003B-26A1]
Length = 339
Score = 134 bits (338), Expect = 3e-30, Method: Composition-based stats.
Identities = 33/152 (21%), Positives = 68/152 (44%), Gaps = 15/152 (9%)
Query: 1 MFDVNSWF--------LVGLITVSVFCFLYAIFYNVINPGDSKSQDNAKVVR-----ADR 47
M +++ + L S+ +YA+F V++ + Q ++ +DR
Sbjct: 1 MTSLDALLTPELTTIAVALLAAFSIGGVIYALFEPVLSGSKRREQRLGQIAARPQAASDR 60
Query: 48 VIPTANTKRRKELREAIQKIELNHK--AKIGNTKSIDSLISCSGLPISKQHYYIGSCVIG 105
KRRK +++ +++ E K K N+ ++ + + +GL ++H+ I S V G
Sbjct: 61 RPVRDAEKRRKSVQDQLKEFEEKQKARQKRANSLTLTNRLEQAGLDWERKHFIIFSIVSG 120
Query: 106 FICGVLSLTLSSSFFTFLCVSVSSALVFPRFF 137
+ +L L+ S L ++ L FPR++
Sbjct: 121 LVFLILGFLLTRSPILTLAIAFVGGLGFPRWY 152
>gi|315121887|ref|YP_004062376.1| pilus assembly protein [Candidatus Liberibacter solanacearum
CLso-ZC1]
gi|313495289|gb|ADR51888.1| pilus assembly protein [Candidatus Liberibacter solanacearum
CLso-ZC1]
Length = 328
Score = 130 bits (326), Expect = 8e-29, Method: Composition-based stats.
Identities = 74/137 (54%), Positives = 98/137 (71%), Gaps = 3/137 (2%)
Query: 2 FDVNSWFLVGLITVSVFCFLYAIFYNVIN-PGDSKSQDNAKVVRADR--VIPTANTKRRK 58
D+NS+ LVGLI++SVF LY + + S+S+D KV++ + IP+A KRRK
Sbjct: 3 LDINSFLLVGLISISVFFLLYFLLFKTTGLESSSESRDPKKVIKDKKNDTIPSAAVKRRK 62
Query: 59 ELREAIQKIELNHKAKIGNTKSIDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLSSS 118
LR+A+ KIEL+HK K GNTKS+ SLIS SG+P SK+H+YI SCV+G + G++SL L SS
Sbjct: 63 VLRDAMDKIELSHKEKFGNTKSLSSLISYSGIPFSKEHFYIFSCVMGLVFGIISLALFSS 122
Query: 119 FFTFLCVSVSSALVFPR 135
FF LCV +SSALV PR
Sbjct: 123 FFVSLCVCLSSALVVPR 139
>gi|218461009|ref|ZP_03501100.1| probable pilus assembly protein [Rhizobium etli Kim 5]
gi|218662450|ref|ZP_03518380.1| probable pilus assembly protein [Rhizobium etli IE4771]
Length = 335
Score = 127 bits (320), Expect = 4e-28, Method: Composition-based stats.
Identities = 29/110 (26%), Positives = 55/110 (50%), Gaps = 1/110 (0%)
Query: 27 NVINPGDSKSQDNAKVVRADRVIPTANTKRRKELREAIQKIELNHKAKIGNTKSIDSLIS 86
+ IN S D KV A R +KRRK +++ ++ +E K T S+ S +
Sbjct: 39 SRINRVKSAEVDRVKVKAA-RDRVQELSKRRKSVQDNLKDLEKRQHEKTRKTLSMKSRLL 97
Query: 87 CSGLPISKQHYYIGSCVIGFICGVLSLTLSSSFFTFLCVSVSSALVFPRF 136
+GLPIS +Y+ S + + +++ + +S+ + ++V + L PR+
Sbjct: 98 QAGLPISVGKFYLISAIFASVLLIVAFIVGASWMVMIGIAVVAGLGLPRW 147
>gi|190889885|ref|YP_001976427.1| pilus assembly protein [Rhizobium etli CIAT 652]
gi|190695164|gb|ACE89249.1| probable pilus assembly protein [Rhizobium etli CIAT 652]
gi|327194690|gb|EGE61536.1| putative pilus assembly protein [Rhizobium etli CNPAF512]
Length = 335
Score = 127 bits (319), Expect = 4e-28, Method: Composition-based stats.
Identities = 30/110 (27%), Positives = 54/110 (49%), Gaps = 1/110 (0%)
Query: 27 NVINPGDSKSQDNAKVVRADRVIPTANTKRRKELREAIQKIELNHKAKIGNTKSIDSLIS 86
+ IN S D KV A R +KRRK +++ ++ +E K T S+ S +
Sbjct: 39 SRINRVKSAEVDRVKVKAA-RDRVQELSKRRKSVQDNLKDLEKRQHEKTRKTLSMKSRLL 97
Query: 87 CSGLPISKQHYYIGSCVIGFICGVLSLTLSSSFFTFLCVSVSSALVFPRF 136
+GLPIS +Y+ S V + ++ + +S+ + ++V + L PR+
Sbjct: 98 QAGLPISVGKFYLISAVFASVLLFVAFVVGASWMVMIGIAVVAGLGLPRW 147
>gi|218516696|ref|ZP_03513536.1| probable pilus assembly protein [Rhizobium etli 8C-3]
Length = 335
Score = 127 bits (319), Expect = 5e-28, Method: Composition-based stats.
Identities = 30/110 (27%), Positives = 54/110 (49%), Gaps = 1/110 (0%)
Query: 27 NVINPGDSKSQDNAKVVRADRVIPTANTKRRKELREAIQKIELNHKAKIGNTKSIDSLIS 86
+ IN S D KV A R +KRRK +++ ++ +E K T S+ S +
Sbjct: 39 SRINRVKSAEVDRVKVKAA-RDRVQELSKRRKSVQDNLKDLEKRQHEKTRKTLSMKSRLL 97
Query: 87 CSGLPISKQHYYIGSCVIGFICGVLSLTLSSSFFTFLCVSVSSALVFPRF 136
+GLPIS +Y+ S V + ++ + +S+ + ++V + L PR+
Sbjct: 98 QAGLPISVGKFYLISAVFASVLLFVAFVVGASWMVMIGIAVVAGLGLPRW 147
>gi|13474664|ref|NP_106233.1| hypothetical protein mlr5603 [Mesorhizobium loti MAFF303099]
gi|14025419|dbj|BAB52019.1| mlr5603 [Mesorhizobium loti MAFF303099]
Length = 337
Score = 127 bits (319), Expect = 6e-28, Method: Composition-based stats.
Identities = 32/150 (21%), Positives = 66/150 (44%), Gaps = 13/150 (8%)
Query: 1 MFDVNSWFL--VGLITVSVFCFLYAIFYNVINPGD---------SKSQDNAKVVRADRVI 49
MF ++ L V L S YA + I+ ++ + +V+A R
Sbjct: 1 MFGIDGTVLAFVVLAGFSAGAVAYAFLFTQISNEKQAGKRLETIKTAETDRSIVKATRDR 60
Query: 50 PTANTKRRKELREAIQKIELNHKAKIG--NTKSIDSLISCSGLPISKQHYYIGSCVIGFI 107
T KRRK +++++++++ K K + + + +G+ +S + +YI S + G
Sbjct: 61 ATDAAKRRKSVQDSLKELDEKQKTKDSAIKKPPLKAQLRQAGMKVSIERFYIYSAICGLA 120
Query: 108 CGVLSLTLSSSFFTFLCVSVSSALVFPRFF 137
V++ + + V ++ AL PR+F
Sbjct: 121 LTVVAFVVGAPMLVLPGVLLAGALGLPRWF 150
>gi|163757631|ref|ZP_02164720.1| hypothetical protein HPDFL43_19512 [Hoeflea phototrophica DFL-43]
gi|162285133|gb|EDQ35415.1| hypothetical protein HPDFL43_19512 [Hoeflea phototrophica DFL-43]
Length = 336
Score = 127 bits (319), Expect = 6e-28, Method: Composition-based stats.
Identities = 34/149 (22%), Positives = 67/149 (44%), Gaps = 14/149 (9%)
Query: 1 MFDVNSWF--LVGLITVSVFCFLYAIFYNVINPGDSKSQDNAKVVRAD----------RV 48
MF +++ ++GL +S Y + Y+ I GD K+++ K V+A R
Sbjct: 1 MFGLDTVVVAIIGLAALSAGALGYGVLYSRIE-GDRKAENRVKRVKAAETDRSKASAARD 59
Query: 49 IPTANTKRRKELREAIQKIELNHKAKIGNT-KSIDSLISCSGLPISKQHYYIGSCVIGFI 107
KRRK ++++++ ++ +K T + I +GLP S +Y+ S V+G +
Sbjct: 60 RLAEANKRRKSVQDSLKTLDEKNKENDKKTSPPLKDKIGQAGLPFSLGQFYMISLVLGLV 119
Query: 108 CGVLSLTLSSSFFTFLCVSVSSALVFPRF 136
G++ S +++ PR+
Sbjct: 120 AGLVGFVAYGSPLVAAGIAIIFGAGVPRW 148
>gi|239833233|ref|ZP_04681562.1| type II secretion system protein [Ochrobactrum intermedium LMG
3301]
gi|239825500|gb|EEQ97068.1| type II secretion system protein [Ochrobactrum intermedium LMG
3301]
Length = 336
Score = 124 bits (311), Expect = 4e-27, Method: Composition-based stats.
Identities = 30/141 (21%), Positives = 61/141 (43%), Gaps = 11/141 (7%)
Query: 8 FLVGLITVSVFCFLYAIFYNVINPGDSKSQD---------NAKVVRADRVIPTANTKRRK 58
V L ++ YA+FY + D ++ + R++R KRRK
Sbjct: 9 MFVVLAVIACAALFYALFYEKLGKKDHAARRFETVRNSGSERAITRSERDRNADIQKRRK 68
Query: 59 ELREAIQKIELNHKAKIGNTK--SIDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLS 116
+L++ I+ +E K + N K + L++ +GL ++ Q +Y+ S F ++L
Sbjct: 69 QLQDNIKDLEARQKQREKNQKYPPLRILLTQAGLTLTLQKFYLYSGAAAFFATFVALLFG 128
Query: 117 SSFFTFLCVSVSSALVFPRFF 137
+ ++++ PR+F
Sbjct: 129 APLLFLPGIAIAGFFGLPRWF 149
>gi|170740617|ref|YP_001769272.1| type II secretion system protein [Methylobacterium sp. 4-46]
gi|168194891|gb|ACA16838.1| type II secretion system protein [Methylobacterium sp. 4-46]
Length = 322
Score = 124 bits (311), Expect = 5e-27, Method: Composition-based stats.
Identities = 30/140 (21%), Positives = 73/140 (52%), Gaps = 8/140 (5%)
Query: 1 MFDVNSWFLVGLITVSVFCFLYAIFYNVINPGDSKSQDNAKVVRADRVIPTANTK---RR 57
M ++ + GL+ V+ C YA+ ++ P ++++ + + A R P + RR
Sbjct: 1 MTSFDALIVAGLLAVTASCLAYAVVVPLL-PSEARAAKRQQAI-AGRRSPMERVQAVNRR 58
Query: 58 KELREAIQKIELNHKAKIGNTKSIDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLSS 117
+++ ++++++E + S++ I+ +GL I+K +Y+ S V+ + V+ L +S
Sbjct: 59 EQVAKSLKELEAKERKA---RPSLELRITQAGLSITKSQFYVASGVLAGVSLVMGLVMSG 115
Query: 118 SFFTFLCVSVSSALVFPRFF 137
S T + ++ ++ L P++
Sbjct: 116 SPLTAIALAFAAGLGLPQWL 135
>gi|260461945|ref|ZP_05810190.1| type II secretion system protein [Mesorhizobium opportunistum
WSM2075]
gi|259032192|gb|EEW33458.1| type II secretion system protein [Mesorhizobium opportunistum
WSM2075]
Length = 337
Score = 124 bits (310), Expect = 6e-27, Method: Composition-based stats.
Identities = 33/150 (22%), Positives = 66/150 (44%), Gaps = 13/150 (8%)
Query: 1 MFDVNSWFL--VGLITVSVFCFLYAIFYNVINPGD---------SKSQDNAKVVRADRVI 49
MF ++ L V L S YA +N I+ ++ + VV+A R
Sbjct: 1 MFGIDGTVLAFVVLAGFSAGAVAYAFLFNQISNERQTGKRLETIKAAETDRSVVKATRDR 60
Query: 50 PTANTKRRKELREAIQKIELNHKAKIG--NTKSIDSLISCSGLPISKQHYYIGSCVIGFI 107
T KRRK +++++++++ K+K + + + +G+ + + +YI S + G
Sbjct: 61 ATDAAKRRKSVQDSLKELDEKQKSKDSAIKKPPLKAQLRQAGMKVPIERFYIYSAICGIA 120
Query: 108 CGVLSLTLSSSFFTFLCVSVSSALVFPRFF 137
V++ + V ++ AL PR+F
Sbjct: 121 LTVIAFVAGAPLIVLPGVLLAGALGLPRWF 150
>gi|116249985|ref|YP_765823.1| pilus assembly protein [Rhizobium leguminosarum bv. viciae 3841]
gi|115254633|emb|CAK05707.1| putative pilus assembly protein [Rhizobium leguminosarum bv. viciae
3841]
Length = 335
Score = 123 bits (308), Expect = 1e-26, Method: Composition-based stats.
Identities = 29/110 (26%), Positives = 54/110 (49%), Gaps = 1/110 (0%)
Query: 27 NVINPGDSKSQDNAKVVRADRVIPTANTKRRKELREAIQKIELNHKAKIGNTKSIDSLIS 86
+ IN S D KV A R +KRRK +++ ++ +E K T S+ S +
Sbjct: 39 SRINRVKSAESDRVKVKAA-RDRVQELSKRRKSVQDNLKDLEKRQHEKTKKTVSMKSRLV 97
Query: 87 CSGLPISKQHYYIGSCVIGFICGVLSLTLSSSFFTFLCVSVSSALVFPRF 136
+GL I+ +Y+ S V + +++L + +S + ++V + L PR+
Sbjct: 98 QAGLTITAAKFYLISAVFASVLLLIALVVGASLMVMIGIAVVAGLGLPRW 147
>gi|241207161|ref|YP_002978257.1| type II secretion system protein [Rhizobium leguminosarum bv.
trifolii WSM1325]
gi|240861051|gb|ACS58718.1| type II secretion system protein [Rhizobium leguminosarum bv.
trifolii WSM1325]
Length = 335
Score = 122 bits (306), Expect = 2e-26, Method: Composition-based stats.
Identities = 28/110 (25%), Positives = 55/110 (50%), Gaps = 1/110 (0%)
Query: 27 NVINPGDSKSQDNAKVVRADRVIPTANTKRRKELREAIQKIELNHKAKIGNTKSIDSLIS 86
+ IN S D KV A R +KRRK +++ ++ +E K T S+ + +
Sbjct: 39 SRINRVKSAESDRVKVKAA-RDRVQELSKRRKSVQDNLKDLEKRQHEKTKKTVSMKARLV 97
Query: 87 CSGLPISKQHYYIGSCVIGFICGVLSLTLSSSFFTFLCVSVSSALVFPRF 136
+GL I+ +Y+ S V + +++L + +S+ + ++V + L PR+
Sbjct: 98 QAGLTITAAKFYLISAVFASMLLLVALVVGASWMVMVGIAVVAGLGLPRW 147
>gi|86355868|ref|YP_467760.1| pilus assembly protein [Rhizobium etli CFN 42]
gi|86279970|gb|ABC89033.1| probable pilus assembly protein [Rhizobium etli CFN 42]
Length = 335
Score = 122 bits (306), Expect = 2e-26, Method: Composition-based stats.
Identities = 26/110 (23%), Positives = 53/110 (48%), Gaps = 1/110 (0%)
Query: 27 NVINPGDSKSQDNAKVVRADRVIPTANTKRRKELREAIQKIELNHKAKIGNTKSIDSLIS 86
+ IN S D AKV A R +KRRK +++ ++ +E K T S+ S +
Sbjct: 39 SRINRVKSAEVDRAKVKAA-RDRVQEMSKRRKSVQDNLKDLEKRQNEKTKKTLSMKSRLV 97
Query: 87 CSGLPISKQHYYIGSCVIGFICGVLSLTLSSSFFTFLCVSVSSALVFPRF 136
+GL ++ +Y+ S + + ++ + +S+ + ++ + L PR+
Sbjct: 98 QAGLTVTLTQFYLFSAIFASVLLFMAFIIGASWLVMIGIAFVAGLGLPRW 147
>gi|218672463|ref|ZP_03522132.1| probable pilus assembly protein [Rhizobium etli GR56]
Length = 168
Score = 120 bits (302), Expect = 5e-26, Method: Composition-based stats.
Identities = 29/110 (26%), Positives = 53/110 (48%), Gaps = 1/110 (0%)
Query: 27 NVINPGDSKSQDNAKVVRADRVIPTANTKRRKELREAIQKIELNHKAKIGNTKSIDSLIS 86
+ IN S D KV A R +KRRK +++ ++ +E K T S+ S +
Sbjct: 39 SRINRVKSAEVDRVKVKAA-RDRVQELSKRRKSVQDNLKDLEKRQHEKTRKTLSMKSRLL 97
Query: 87 CSGLPISKQHYYIGSCVIGFICGVLSLTLSSSFFTFLCVSVSSALVFPRF 136
+GLPIS +Y+ S + + + + +S+ + ++V + L PR+
Sbjct: 98 QAGLPISVGKFYLISAIFASVLLFGAFVVGASWMVMIGIAVVAGLGLPRW 147
>gi|209551763|ref|YP_002283680.1| type II secretion system protein [Rhizobium leguminosarum bv.
trifolii WSM2304]
gi|209537519|gb|ACI57454.1| type II secretion system protein [Rhizobium leguminosarum bv.
trifolii WSM2304]
Length = 335
Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats.
Identities = 26/110 (23%), Positives = 52/110 (47%), Gaps = 1/110 (0%)
Query: 27 NVINPGDSKSQDNAKVVRADRVIPTANTKRRKELREAIQKIELNHKAKIGNTKSIDSLIS 86
+ I+ S D KV A R +KRRK +++ ++ +E K T ++ S +
Sbjct: 39 SRIDRVKSAESDRVKVKAA-RDRVQEMSKRRKSVQDNLKDLEKRQHEKTKKTLTMKSRLV 97
Query: 87 CSGLPISKQHYYIGSCVIGFICGVLSLTLSSSFFTFLCVSVSSALVFPRF 136
+GL I+ +YI S + + +++ + S + ++V + L PR+
Sbjct: 98 QAGLTITVGKFYIISAIFACVLLLMAFLIGVSLMVIIGIAVVAGLGLPRW 147
>gi|222084473|ref|YP_002543002.1| pilus assembly protein [Agrobacterium radiobacter K84]
gi|221721921|gb|ACM25077.1| pilus assembly protein [Agrobacterium radiobacter K84]
Length = 335
Score = 103 bits (258), Expect = 5e-21, Method: Composition-based stats.
Identities = 22/126 (17%), Positives = 52/126 (41%), Gaps = 7/126 (5%)
Query: 17 VFCFLYAIFY------NVINPGDSKSQDNAKVVRADRVIPTANTKRRKELREAIQKIELN 70
+ LY+ + ++ + D KV A R +KRRK +++ ++ +E
Sbjct: 23 CYGVLYSQIEAQKKTDSRVSRVKAAESDRTKVKVA-RDRVQEMSKRRKSVQDTLKDLEKR 81
Query: 71 HKAKIGNTKSIDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLSSSFFTFLCVSVSSA 130
+S+ + + +GL ++ +Y+ S + G V++ + + ++A
Sbjct: 82 QVENTKKKQSLKARLVQAGLSLTPARFYVFSVLFGLFVMVVAFLFGAPLAVIAGLPFAAA 141
Query: 131 LVFPRF 136
PR+
Sbjct: 142 FGLPRW 147
>gi|307320430|ref|ZP_07599847.1| Type II secretion system F domain protein [Sinorhizobium meliloti
AK83]
gi|306893996|gb|EFN24765.1| Type II secretion system F domain protein [Sinorhizobium meliloti
AK83]
Length = 336
Score = 103 bits (257), Expect = 7e-21, Method: Composition-based stats.
Identities = 25/104 (24%), Positives = 51/104 (49%), Gaps = 1/104 (0%)
Query: 34 SKSQDNAKVVRADRVIPTANTKRRKELREAIQKIELNHKAKIGNT-KSIDSLISCSGLPI 92
S S+ + ++A R +KRRK ++++++++E + K NT S+ + +GL I
Sbjct: 45 SASETDRTKIKAARDRVNEMSKRRKSVQDSLKELEKKQQEKSANTAPSMKKRLLQAGLSI 104
Query: 93 SKQHYYIGSCVIGFICGVLSLTLSSSFFTFLCVSVSSALVFPRF 136
S +Y+ S + G ++ L + V++ A PR+
Sbjct: 105 SLAQFYLFSALFGLFAFLVVLLAGAGLLIAAGVALIGAAGLPRW 148
>gi|15963898|ref|NP_384251.1| hypothetical protein SMc02821 [Sinorhizobium meliloti 1021]
gi|307315795|ref|ZP_07595309.1| Type II secretion system F domain protein [Sinorhizobium meliloti
BL225C]
gi|15073073|emb|CAC41532.1| Hypothetical transmembrane protein [Sinorhizobium meliloti 1021]
gi|306898563|gb|EFN29236.1| Type II secretion system F domain protein [Sinorhizobium meliloti
BL225C]
Length = 336
Score = 103 bits (257), Expect = 9e-21, Method: Composition-based stats.
Identities = 25/104 (24%), Positives = 51/104 (49%), Gaps = 1/104 (0%)
Query: 34 SKSQDNAKVVRADRVIPTANTKRRKELREAIQKIELNHKAKIGNT-KSIDSLISCSGLPI 92
S S+ + ++A R +KRRK ++++++++E + K NT S+ + +GL I
Sbjct: 45 SASETDRTKIKAARDRVNEMSKRRKSVQDSLKELEKKQQEKSANTAPSMKKRLLQAGLSI 104
Query: 93 SKQHYYIGSCVIGFICGVLSLTLSSSFFTFLCVSVSSALVFPRF 136
S +Y+ S + G ++ L + V++ A PR+
Sbjct: 105 SLAQFYLFSALFGLFAFLVVLLAGAGLLIAAGVALIGAAGLPRW 148
>gi|110636325|ref|YP_676533.1| type II secretion system protein [Mesorhizobium sp. BNC1]
gi|110287309|gb|ABG65368.1| type II secretion system protein [Chelativorans sp. BNC1]
Length = 337
Score = 102 bits (255), Expect = 1e-20, Method: Composition-based stats.
Identities = 31/146 (21%), Positives = 57/146 (39%), Gaps = 11/146 (7%)
Query: 2 FDVNSWFLVGLITVSVFCFLYAIFYNVINPGDS---------KSQDNAKVVRADRVIPTA 52
++ V L S Y + +N I ++Q VVRA R
Sbjct: 4 LSLSLLAFVVLAACSAGGLAYVLMFNTIASEKKVERRLETVKRAQIEGNVVRAARDRAAE 63
Query: 53 NTKRRKELREAIQKIELNHKAKIG--NTKSIDSLISCSGLPISKQHYYIGSCVIGFICGV 110
KRR+ ++E+++ IE K + + I +GL +S + +YI S V+G + +
Sbjct: 64 IAKRRRSIQESLKDIETRQKDQDRFLKRPPLKIQIRQAGLEMSMERFYILSAVVGLLFVI 123
Query: 111 LSLTLSSSFFTFLCVSVSSALVFPRF 136
++ + V+ PR+
Sbjct: 124 VTFIAGAPLLAVAGAMVAGFFGAPRW 149
>gi|319785604|ref|YP_004145080.1| type II secretion system F domain [Mesorhizobium ciceri biovar
biserrulae WSM1271]
gi|317171492|gb|ADV15030.1| Type II secretion system F domain [Mesorhizobium ciceri biovar
biserrulae WSM1271]
Length = 337
Score = 99.7 bits (247), Expect = 1e-19, Method: Composition-based stats.
Identities = 30/150 (20%), Positives = 61/150 (40%), Gaps = 13/150 (8%)
Query: 1 MFDVNSWFL--VGLITVSVFCFLYAIFYNVINPGD---------SKSQDNAKVVRADRVI 49
MF ++ L V L S YA + I+ ++ + VV+A R
Sbjct: 1 MFGIDGTVLAFVVLAGFSAGAVAYAFLFTRISNEKQVGKRLETIRTAETDRSVVKASRDR 60
Query: 50 PTANTKRRKELREAIQKIELNHKAKIG--NTKSIDSLISCSGLPISKQHYYIGSCVIGFI 107
KRRK +++++ +++ K K + + + +GL + + +YI S + G +
Sbjct: 61 VAEAAKRRKSVQDSLNELDAKQKTKDSRVKKPPLKAQLRQAGLKTTIERFYIYSAICGIV 120
Query: 108 CGVLSLTLSSSFFTFLCVSVSSALVFPRFF 137
+ + + V ++ L PR+F
Sbjct: 121 LTMAAFVAGAPLIALPGVLLAGGLGLPRWF 150
>gi|227823975|ref|YP_002827948.1| putative type II/IV secretion system protein TadB, Flp pilus
assembly protein TadB [Sinorhizobium fredii NGR234]
gi|227342977|gb|ACP27195.1| putative type II/IV secretion system protein TadB, Flp pilus
assembly protein TadB [Sinorhizobium fredii NGR234]
Length = 336
Score = 99.7 bits (247), Expect = 1e-19, Method: Composition-based stats.
Identities = 26/126 (20%), Positives = 56/126 (44%), Gaps = 10/126 (7%)
Query: 22 YAIFYNVINPGD---------SKSQDNAKVVRADRVIPTANTKRRKELREAIQKIELNHK 72
Y + Y+ I S ++ + ++A R +KRRK L+++++++E +
Sbjct: 24 YGVLYSRIENDKKAEGRLRRVSAAETDRAKIKAARDRVNEMSKRRKSLQDSLKELEKKQQ 83
Query: 73 AKIGNT-KSIDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLSSSFFTFLCVSVSSAL 131
K N S+ + + L IS +Y+ S + G ++ L + + V++ +A
Sbjct: 84 EKSANAAPSMKKRLVQANLSISPAQFYVFSVIFGLFALIVVLIAGAGLWIAGGVALITAA 143
Query: 132 VFPRFF 137
PR+
Sbjct: 144 GLPRWL 149
>gi|254505024|ref|ZP_05117175.1| Bacterial type II secretion system protein F domain [Labrenzia
alexandrii DFL-11]
gi|222441095|gb|EEE47774.1| Bacterial type II secretion system protein F domain [Labrenzia
alexandrii DFL-11]
Length = 339
Score = 97.4 bits (241), Expect = 5e-19, Method: Composition-based stats.
Identities = 27/136 (19%), Positives = 53/136 (38%), Gaps = 7/136 (5%)
Query: 9 LVGLITVSVFCFLYAIFYNVINPGDSKSQDNAKVVR-----ADRVIPTANTKRRKELREA 63
+ L+ SV +Y +F ++ + + V R +R+K +++
Sbjct: 17 VAILVMFSVGGIIYGLFLPSLSGTKKRDARMSAVSARPQSETQRKTMRDTNRRKKSIQDQ 76
Query: 64 IQKIELNHKAKIGNTK--SIDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLSSSFFT 121
++ E KAK K + I +GL +H + S V + V+SL S +
Sbjct: 77 LKDFEERQKAKHEKQKNVPLKVKIEQAGLEWEMRHLVLFSVVSAILFFVISLIASGNLLI 136
Query: 122 FLCVSVSSALVFPRFF 137
+ + FPR++
Sbjct: 137 AAAFTFVGGIGFPRWY 152
>gi|15887569|ref|NP_353250.1| components of type IV pilus [Agrobacterium tumefaciens str. C58]
gi|15155106|gb|AAK86035.1| components of type IV pilus [Agrobacterium tumefaciens str. C58]
Length = 334
Score = 96.3 bits (238), Expect = 1e-18, Method: Composition-based stats.
Identities = 32/140 (22%), Positives = 59/140 (42%), Gaps = 11/140 (7%)
Query: 8 FLVGLITVSVFCFLYAIFYNVINPGDSKSQDNAKV---------VRADRVIPTANTKRRK 58
L L+ +S YA + I + +V ++A R +KRRK
Sbjct: 7 LLAVLVAISAGALAYAFLFQQIEVEKKTTSRFKRVQAAETDHTNIKAARDRVQELSKRRK 66
Query: 59 ELREAIQKIELNHKAKIGNTK--SIDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLS 116
++++++ +E K K S+ + +GL IS + +++ S +SL
Sbjct: 67 SMQDSLRDMEKKQNEKAKKAKNVSLRDKLVQAGLTISVRQFHLLSAGAAACAAFISLIYG 126
Query: 117 SSFFTFLCVSVSSALVFPRF 136
S T L ++V +AL PR+
Sbjct: 127 LSLLTALPIAVVAALGLPRW 146
>gi|307943149|ref|ZP_07658494.1| type II secretion system protein [Roseibium sp. TrichSKD4]
gi|307773945|gb|EFO33161.1| type II secretion system protein [Roseibium sp. TrichSKD4]
Length = 340
Score = 94.3 bits (233), Expect = 5e-18, Method: Composition-based stats.
Identities = 30/143 (20%), Positives = 61/143 (42%), Gaps = 8/143 (5%)
Query: 3 DVNSWFLVGLITVSVFCFLYAIFYNVINPGDSKSQDNAKVVRADRVIP------TANTKR 56
D+ + ++GL+ +S+ L+A+ ++ +SQ + + D P KR
Sbjct: 11 DMTALAVMGLVMLSIGGVLFALLQPAMSSDKRRSQRISTIKGVDGKTPGLAIRNRDADKR 70
Query: 57 RKELREAIQKIELN--HKAKIGNTKSIDSLISCSGLPISKQHYYIGSCVIGFICGVLSLT 114
RK +++ + ++E K + + S+ I +GL + + S V G + V+
Sbjct: 71 RKSVKDQLDQLEQRTQQKNAMRDKPSLRLRIEQAGLSWDVKRFIQISIVTGVLATVIFYF 130
Query: 115 LSSSFFTFLCVSVSSALVFPRFF 137
S + L + A PRF+
Sbjct: 131 FSGNVLIALLGGFAGAFGLPRFY 153
>gi|222147178|ref|YP_002548135.1| component of type IV pilus [Agrobacterium vitis S4]
gi|221734168|gb|ACM35131.1| component of type IV pilus [Agrobacterium vitis S4]
Length = 334
Score = 93.6 bits (231), Expect = 9e-18, Method: Composition-based stats.
Identities = 26/126 (20%), Positives = 54/126 (42%), Gaps = 11/126 (8%)
Query: 22 YAIFYNVINPGDSKSQDNAKVVRAD---------RVIPTANTKRRKELREAIQKIELNHK 72
Y + ++ + + A+V A+ R +KRRK +++ +++IE
Sbjct: 21 YVLLFSRVQADKKTATRLARVKNAEADTAKKQVARDRVQELSKRRKSVQDTLKEIERKQN 80
Query: 73 AKIGN--TKSIDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLSSSFFTFLCVSVSSA 130
K ++S+ + +GL +S + I S +G + L L S F L ++ ++
Sbjct: 81 EKNKKISSQSLKQRLGQTGLDVSLIQFSIASTTLGLVFFCLCFVLGMSLFVSLGIAFTAG 140
Query: 131 LVFPRF 136
PR+
Sbjct: 141 AGLPRW 146
>gi|325291655|ref|YP_004277519.1| components of type IV pilus [Agrobacterium sp. H13-3]
gi|325059508|gb|ADY63199.1| components of type IV pilus [Agrobacterium sp. H13-3]
Length = 334
Score = 91.3 bits (225), Expect = 4e-17, Method: Composition-based stats.
Identities = 28/141 (19%), Positives = 55/141 (39%), Gaps = 11/141 (7%)
Query: 7 WFLVGLITVSVFCFLYAIFYNVINPGDSKSQDNAKVVRAD---------RVIPTANTKRR 57
L L+ +S YA + I + +V A+ R KRR
Sbjct: 6 LLLAALVAISAGALAYAFLFQQIEVEKKTTSRVKRVKAAETDHANIKAARDRVQELGKRR 65
Query: 58 KELREAIQKIELNHKAKIGNTKS--IDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTL 115
K ++++++++E K K+ + + +GL +S + +++ S V++L
Sbjct: 66 KSMQDSLREMEKKQSEKAKKAKNVGLREKLVQAGLQLSVRQFHLLSAGAAAFSVVIALLY 125
Query: 116 SSSFFTFLCVSVSSALVFPRF 136
S L + AL PR+
Sbjct: 126 GLSLLIALLIGAVVALGLPRW 146
>gi|92116009|ref|YP_575738.1| type II secretion system protein [Nitrobacter hamburgensis X14]
gi|91798903|gb|ABE61278.1| type II secretion system protein [Nitrobacter hamburgensis X14]
Length = 324
Score = 89.7 bits (221), Expect = 1e-16, Method: Composition-based stats.
Identities = 22/139 (15%), Positives = 61/139 (43%), Gaps = 5/139 (3%)
Query: 2 FDVNSWFLVGLITVSVFCFLYAIFYNVINPGDSKSQDNAKVVR---ADRVIPTANTKRRK 58
++ + + + +V + Y ++ + + R A R + A RR+
Sbjct: 1 MNLQTLAMAFMAATAVGGVAWVFLYPALSGEAKAEKRRSAFARTAPAVRQVDRAQRSRRE 60
Query: 59 ELREAIQKIELNHKAKIGNTKSIDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLSSS 118
++ ++++IE + K + +++ I+ +GL SK+ + I S + G +C + + +
Sbjct: 61 QIEGSLREIE--QRQKRDSKITLNDRIAQAGLSWSKEKFLIVSGIFGAVCFAVPMFSGAG 118
Query: 119 FFTFLCVSVSSALVFPRFF 137
+ ++ ++ PR+
Sbjct: 119 PIAAVGLAFAAGFGLPRWL 137
>gi|299132290|ref|ZP_07025485.1| Type II secretion system F domain protein [Afipia sp. 1NLS2]
gi|298592427|gb|EFI52627.1| Type II secretion system F domain protein [Afipia sp. 1NLS2]
Length = 323
Score = 87.8 bits (216), Expect = 5e-16, Method: Composition-based stats.
Identities = 22/138 (15%), Positives = 62/138 (44%), Gaps = 6/138 (4%)
Query: 2 FDVNSWFLVGLITVSVFCFLYAIFYNVINPGDSKSQDNAKVVR---ADRVIPTANTKRRK 58
+ + + + V++ + Y +++ + A R A R I RR+
Sbjct: 1 MKIQTLAIAFMSAVTLGGLAWVFLYPLLSGERQAEKRRASFSRTEAATRRIDRNQRSRRE 60
Query: 59 ELREAIQKIELNHKAKIGNTKSIDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLSSS 118
++ + ++ +E +AK +++ ++ +G+ S++ + IGS +G + + +++
Sbjct: 61 QVEDTLKDVE--DRAKQAKKVPLNTRLAQAGVSWSRRQFIIGSAALGLLVFFICFV-TAN 117
Query: 119 FFTFLCVSVSSALVFPRF 136
+++S+ L PR+
Sbjct: 118 LIATAALALSAGLGLPRW 135
>gi|150398545|ref|YP_001329012.1| type II secretion system protein [Sinorhizobium medicae WSM419]
gi|150030060|gb|ABR62177.1| type II secretion system protein [Sinorhizobium medicae WSM419]
Length = 336
Score = 87.8 bits (216), Expect = 5e-16, Method: Composition-based stats.
Identities = 22/104 (21%), Positives = 50/104 (48%), Gaps = 1/104 (0%)
Query: 34 SKSQDNAKVVRADRVIPTANTKRRKELREAIQKIELNHKAKIGNT-KSIDSLISCSGLPI 92
S ++ + ++A R +KRRK ++++++++E + K N+ S+ + + L I
Sbjct: 45 SAAETDRTKIKAARDRVNEMSKRRKSVQDSLKELEKKQQEKSANSAPSMKKRLLQANLSI 104
Query: 93 SKQHYYIGSCVIGFICGVLSLTLSSSFFTFLCVSVSSALVFPRF 136
S +Y+ S + G V+ + V +++A PR+
Sbjct: 105 SVAQFYLFSALFGLFTFVVVFLAGAGALIAAGVGLTAAAGLPRW 148
>gi|114705451|ref|ZP_01438359.1| probable pilus assembly protein [Fulvimarina pelagi HTCC2506]
gi|114540236|gb|EAU43356.1| probable pilus assembly protein [Fulvimarina pelagi HTCC2506]
Length = 335
Score = 87.4 bits (215), Expect = 7e-16, Method: Composition-based stats.
Identities = 29/148 (19%), Positives = 53/148 (35%), Gaps = 11/148 (7%)
Query: 1 MFDVNSWFLVGLITVSVFCFLYAIFYNVINPGDSKSQDNAKVVRAD---------RVIPT 51
M V L T+S C YA + + R + +
Sbjct: 1 MTPFGMMLFVLLSTISAGCLAYAFMQPKLAASKRVAARKTTYSRDEASRTRVIEAKERMQ 60
Query: 52 ANTKRRKELREAIQKIELNHKAKIG--NTKSIDSLISCSGLPISKQHYYIGSCVIGFICG 109
KRR+ L+ ++ +E K + G ++ I +GL I+ + + + S +
Sbjct: 61 EQAKRRRALQNNLKDLEDRAKERGGHSAKPTLQQRIDQAGLKITAKKFRLISAGLAAAAF 120
Query: 110 VLSLTLSSSFFTFLCVSVSSALVFPRFF 137
+L+L L ++V + L PR F
Sbjct: 121 LLTLVFGLPILATLGIAVVAGLGLPRAF 148
>gi|90419768|ref|ZP_01227677.1| putative Flp pilus assembly protein TadB, type II/IV secretion
system [Aurantimonas manganoxydans SI85-9A1]
gi|90335809|gb|EAS49557.1| putative Flp pilus assembly protein TadB, type II/IV secretion
system [Aurantimonas manganoxydans SI85-9A1]
Length = 335
Score = 86.3 bits (212), Expect = 1e-15, Method: Composition-based stats.
Identities = 18/106 (16%), Positives = 46/106 (43%), Gaps = 2/106 (1%)
Query: 34 SKSQDNAKVVRADRVIPTANTKRRKELREAIQKIELNHKAKIGNT--KSIDSLISCSGLP 91
++ + ++ R KRRK ++ +++++E K + +T ++ + +G
Sbjct: 43 TRDDTERRSLKVARDRLKEQDKRRKTIQSSLKELESRQKERDKHTGKLTLQRQLEQAGWT 102
Query: 92 ISKQHYYIGSCVIGFICGVLSLTLSSSFFTFLCVSVSSALVFPRFF 137
+S + + + S V+G + ++ + + V L PRF
Sbjct: 103 MSVKQFVLLSIVMGVVSLFVAAIFGAPLLLLIGAVVVGGLGLPRFL 148
>gi|86748903|ref|YP_485399.1| type II secretion system protein [Rhodopseudomonas palustris HaA2]
gi|86571931|gb|ABD06488.1| type II secretion system protein [Rhodopseudomonas palustris HaA2]
Length = 324
Score = 86.3 bits (212), Expect = 1e-15, Method: Composition-based stats.
Identities = 25/138 (18%), Positives = 58/138 (42%), Gaps = 5/138 (3%)
Query: 2 FDVNSWFLVGLITVSVFCFLYAIFYNVINPGDSKSQDNAKVVR---ADRVIPTANTKRRK 58
++ S L L VSV + Y +++ Q V R A R I + RR+
Sbjct: 1 MEMQSLALGFLAAVSVGGLAWVFIYPLLSGEKQAEQRRTSVARTTPAVRQIEKSQRSRRE 60
Query: 59 ELREAIQKIELNHKAKIGNTKSIDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLSSS 118
++ ++++IE + + S+ + ++ +GL + + S +G + ++ L
Sbjct: 61 QVEGSLREIEARSQKQKN--VSLGTKLTQAGLDWTPNKFIGVSAGLGTVAFATTMILGGG 118
Query: 119 FFTFLCVSVSSALVFPRF 136
+ ++ ++ PR+
Sbjct: 119 LLAAVGLAFAAGFGLPRW 136
>gi|209886534|ref|YP_002290391.1| type II secretion system protein [Oligotropha carboxidovorans OM5]
gi|209874730|gb|ACI94526.1| type II secretion system protein [Oligotropha carboxidovorans OM5]
Length = 325
Score = 85.9 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 23/139 (16%), Positives = 62/139 (44%), Gaps = 6/139 (4%)
Query: 2 FDVNSWFLVGLITVSVFCFLYAIFYNVINPGDSKSQDNAKVVR----ADRVIPTANTKRR 57
++ + + + V++ + Y ++ + A + R A RV RR
Sbjct: 1 MNLQTLAIAFMSAVTLGGLAWVFLYPALSGERQAEKRRASLARPENIARRVERNPQRSRR 60
Query: 58 KELREAIQKIELNHKAKIGNTKSIDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLSS 117
+++ + ++ +E ++AK ++ + +G+ +K+ + IGS V+G +L + +
Sbjct: 61 EQVEDTLKDVE--NRAKQAKKVPLNIRLEQAGVNWTKRQFMIGSAVLGIATFLLFYIVDA 118
Query: 118 SFFTFLCVSVSSALVFPRF 136
+F + + ++ PR+
Sbjct: 119 NFLATIAFAGAAGFGLPRW 137
>gi|304320651|ref|YP_003854294.1| hypothetical protein PB2503_05392 [Parvularcula bermudensis
HTCC2503]
gi|303299553|gb|ADM09152.1| hypothetical protein PB2503_05392 [Parvularcula bermudensis
HTCC2503]
Length = 330
Score = 85.9 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 28/141 (19%), Positives = 61/141 (43%), Gaps = 5/141 (3%)
Query: 2 FDVNSWFLVGLITVSVFCFLYAIF-YNVINPGDSKSQDNAKVVRADRVIPTANTK---RR 57
D NS +G+ V++ +A+ ++ + + Q + + + +A + RR
Sbjct: 3 LDQNSLIALGIGLVAIVGLAFALLGFDGGGATNKRVQSLSGNAKQAKRKTSAKEQTRDRR 62
Query: 58 KELREAIQKIELNHKAKIGNTK-SIDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLS 116
K + ++++KIE K K S+D LI +G S + ++ S ++ + +
Sbjct: 63 KTISDSLKKIEDKQKEANQKKKVSLDKLIEQAGFDFSVRDFWTASAIVAVVMIGIGYVSG 122
Query: 117 SSFFTFLCVSVSSALVFPRFF 137
+ L + + L PR+F
Sbjct: 123 QNALVILAMGIVGGLGIPRWF 143
>gi|163851907|ref|YP_001639950.1| type II secretion system protein [Methylobacterium extorquens PA1]
gi|163663512|gb|ABY30879.1| type II secretion system protein [Methylobacterium extorquens PA1]
Length = 323
Score = 84.7 bits (208), Expect = 4e-15, Method: Composition-based stats.
Identities = 22/139 (15%), Positives = 56/139 (40%), Gaps = 5/139 (3%)
Query: 1 MFDVNSWFLVGLITVSVFCFLYAIFYNVINPGDSKSQDNAKVVRADRVIPT--ANTKRRK 58
M +N+ VGL+ V+ Y ++ Q + + V+ A RR+
Sbjct: 1 MSALNAPLTVGLVAVAAGSLAYVFLMPALSGERRAEQRRKALGQPQAVLAERGAAASRRE 60
Query: 59 ELREAIQKIELNHKAKIGNTKSIDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLSSS 118
++ ++++++E K +++ ++ +GL S+Q Y + S + + + + +S +
Sbjct: 61 QVAKSLKELEAK---KDKTKVTLELRLARAGLDWSRQKYRVVSAITAVVLALAAFLVSHN 117
Query: 119 FFTFLCVSVSSALVFPRFF 137
P ++
Sbjct: 118 VIVAGLALFVGGFGLPAWW 136
>gi|240139030|ref|YP_002963505.1| Pilus assembly protein, type II secretion protein [Methylobacterium
extorquens AM1]
gi|240009002|gb|ACS40228.1| Pilus assembly protein, type II secretion protein [Methylobacterium
extorquens AM1]
Length = 323
Score = 84.3 bits (207), Expect = 5e-15, Method: Composition-based stats.
Identities = 22/139 (15%), Positives = 56/139 (40%), Gaps = 5/139 (3%)
Query: 1 MFDVNSWFLVGLITVSVFCFLYAIFYNVINPGDSKSQDNAKVVRADRVIPT--ANTKRRK 58
M +N+ VGL+ V+ Y ++ Q + + V+ A RR+
Sbjct: 1 MSALNAPLAVGLVAVAAGSLAYVFLMPALSGERRAEQRRKALGQPQAVLAERGAAASRRE 60
Query: 59 ELREAIQKIELNHKAKIGNTKSIDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLSSS 118
++ ++++++E K +++ ++ +GL S+Q Y + S + + +++ S +
Sbjct: 61 QVAKSLKELEAK---KDKTKVTLELRLARAGLDWSRQKYRVVSVITAVVLALVAFLASHN 117
Query: 119 FFTFLCVSVSSALVFPRFF 137
P ++
Sbjct: 118 VIVAGLALFVGGFGLPAWW 136
>gi|146338119|ref|YP_001203167.1| putative pilus assembly protein membrane protein [Bradyrhizobium
sp. ORS278]
gi|146190925|emb|CAL74930.1| putative pilus assembly protein; putative membrane protein
[Bradyrhizobium sp. ORS278]
Length = 324
Score = 84.3 bits (207), Expect = 6e-15, Method: Composition-based stats.
Identities = 24/123 (19%), Positives = 56/123 (45%), Gaps = 5/123 (4%)
Query: 17 VFCFLYAIFYNVINPGDSKSQDNAKVVRAD---RVIPTANTKRRKELREAIQKIELNHKA 73
+ + Y +++ Q + V +A+ R + RR+++ +++ +E KA
Sbjct: 16 IGGIAWVFIYPMLSGERKAEQRRSSVAKAEPVVRQVERNQRSRREQVESSLKDLEA--KA 73
Query: 74 KIGNTKSIDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLSSSFFTFLCVSVSSALVF 133
+ + ++ IS +GL + Q ++I S V+GF+ ++ L + ++ L
Sbjct: 74 QKQSKVPLNIRISQAGLDWTVQKFWIISGVLGFVVCAVAFFAGGGPLGALGLGFAAGLGL 133
Query: 134 PRF 136
PR+
Sbjct: 134 PRW 136
>gi|254561625|ref|YP_003068720.1| Pilus assembly protein, type II secretion protein [Methylobacterium
extorquens DM4]
gi|254268903|emb|CAX24864.1| Pilus assembly protein, type II secretion protein [Methylobacterium
extorquens DM4]
Length = 323
Score = 83.9 bits (206), Expect = 7e-15, Method: Composition-based stats.
Identities = 22/139 (15%), Positives = 56/139 (40%), Gaps = 5/139 (3%)
Query: 1 MFDVNSWFLVGLITVSVFCFLYAIFYNVINPGDSKSQDNAKVVRADRVIPT--ANTKRRK 58
M +N+ VGL+ V+ Y ++ Q + + V+ A RR+
Sbjct: 1 MSALNAPLAVGLVAVAAGSLAYVFLMPALSGERRAEQRRKALGQPKAVLAERGAAASRRE 60
Query: 59 ELREAIQKIELNHKAKIGNTKSIDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLSSS 118
++ ++++++E K +++ ++ +GL S+Q Y + S + + + + +S +
Sbjct: 61 QVAKSLKELEAK---KDKTKVTLELRLARAGLDWSRQKYRVVSAITAVVLALAAFFVSHN 117
Query: 119 FFTFLCVSVSSALVFPRFF 137
P ++
Sbjct: 118 VIVAGLALFVGGFGLPAWW 136
>gi|114568974|ref|YP_755654.1| type II secretion system protein [Maricaulis maris MCS10]
gi|114339436|gb|ABI64716.1| type II secretion system protein [Maricaulis maris MCS10]
Length = 327
Score = 83.6 bits (205), Expect = 9e-15, Method: Composition-based stats.
Identities = 13/86 (15%), Positives = 41/86 (47%)
Query: 52 ANTKRRKELREAIQKIELNHKAKIGNTKSIDSLISCSGLPISKQHYYIGSCVIGFICGVL 111
+R+++++E+++ +E + + + SI + I +G+ + +++ S + ++
Sbjct: 55 QAAQRKRQVQESLKDLEQRQRDQRKKSLSIKARIQQAGMSFTPAVFWMVSAGMAAAGLLI 114
Query: 112 SLTLSSSFFTFLCVSVSSALVFPRFF 137
+ S + + S L PR++
Sbjct: 115 AFITGQSLLVTAGIGLVSGLGMPRWW 140
>gi|188581664|ref|YP_001925109.1| type II secretion system protein [Methylobacterium populi BJ001]
gi|179345162|gb|ACB80574.1| type II secretion system protein [Methylobacterium populi BJ001]
Length = 323
Score = 82.8 bits (203), Expect = 1e-14, Method: Composition-based stats.
Identities = 24/139 (17%), Positives = 57/139 (41%), Gaps = 5/139 (3%)
Query: 1 MFDVNSWFLVGLITVSVFCFLYAIFYNVINPGDSKSQDNAKVVRADRVIPT--ANTKRRK 58
M +N+ GL+ V+ Y +++ Q + ++ V+ A RR+
Sbjct: 1 MSALNAPLAAGLVAVASGALAYVFLMPLLSGERRAEQRRKALGQSRAVLAERGAAANRRE 60
Query: 59 ELREAIQKIELNHKAKIGNTKSIDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLSSS 118
++ ++++++E K +++ I+ +GL S++ Y I S V + + +S +
Sbjct: 61 QVAKSLKELEAK---KDKTKVTLELRIARAGLDWSRRKYQIVSAVTAVGVALAAFLISHN 117
Query: 119 FFTFLCVSVSSALVFPRFF 137
L + P +
Sbjct: 118 VIVALLGLFAGGFGLPAWM 136
>gi|154250693|ref|YP_001411517.1| type II secretion system protein [Parvibaculum lavamentivorans
DS-1]
gi|154154643|gb|ABS61860.1| type II secretion system protein [Parvibaculum lavamentivorans
DS-1]
Length = 328
Score = 80.5 bits (197), Expect = 6e-14, Method: Composition-based stats.
Identities = 29/142 (20%), Positives = 61/142 (42%), Gaps = 9/142 (6%)
Query: 2 FDVNSWFLVGLITVSVFCFLYAIFYNVINPGDSKSQDNAKVVRADRVIPTA-------NT 54
D ++ + G+ ++ C AI + + + A+V RA A +
Sbjct: 1 MDQSTLMIAGIAVLAALCIG-AIGFLFVGGESRSQKRVARVTRAGNARLVAVDGEVDNSE 59
Query: 55 KRRKELREAIQKIELNHKAKIGNTKSIDSLISCSGLPISKQHYYIGSCVIGFICGVLSLT 114
KRRK+++E ++ +E + S+++ I +GL ++ +++YI S V G ++
Sbjct: 60 KRRKQMQETLKGLEEKQQE-HKKRVSLNTRIERAGLEMTTRNFYIASIVTGIAFFLVFKL 118
Query: 115 LSSSFFTFLCVSVSSALVFPRF 136
+ S + FPR+
Sbjct: 119 VGLSLLVSALSGFAGGFGFPRW 140
>gi|115525753|ref|YP_782664.1| type II secretion system protein [Rhodopseudomonas palustris
BisA53]
gi|115519700|gb|ABJ07684.1| type II secretion system protein [Rhodopseudomonas palustris
BisA53]
Length = 324
Score = 79.7 bits (195), Expect = 1e-13, Method: Composition-based stats.
Identities = 22/139 (15%), Positives = 59/139 (42%), Gaps = 5/139 (3%)
Query: 2 FDVNSWFLVGLITVSVFCFLYAIFYNVINPGDSKSQDNAKVVRAD---RVIPTANTKRRK 58
+ + + + TV+V + Y +++ Q A + R + R + RR+
Sbjct: 1 MQMQTLAIAFMATVAVGGVAWVFLYPLLSGEKKAEQRRASLARPEPVARQVDKGQRSRRE 60
Query: 59 ELREAIQKIELNHKAKIGNTKSIDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLSSS 118
++ +++++ + + +I + ++ +GL + +++YIGS V+G L
Sbjct: 61 QVELTLKEVDARRQKE--KKVAISTRLTQAGLDWAPKNFYIGSAVLGAAVFALVYLSRGG 118
Query: 119 FFTFLCVSVSSALVFPRFF 137
+ + ++ PR+
Sbjct: 119 ITPAVGLGFAAGFGLPRWL 137
>gi|118589707|ref|ZP_01547112.1| hypothetical protein SIAM614_04685 [Stappia aggregata IAM 12614]
gi|118437793|gb|EAV44429.1| hypothetical protein SIAM614_04685 [Stappia aggregata IAM 12614]
Length = 340
Score = 78.9 bits (193), Expect = 2e-13, Method: Composition-based stats.
Identities = 24/143 (16%), Positives = 57/143 (39%), Gaps = 8/143 (5%)
Query: 3 DVNSWFLVGLITVSVFCFLYAIFYNVINPGDSKSQDNAKVVR-----ADRVIPTANTKRR 57
++ + L+ ++V +Y++F ++ + Q V R +R+
Sbjct: 11 EITGLAVALLVMLAVGGIIYSLFQPALSGSKRRDQRVNAVAARPQSENQRKALRDVDRRK 70
Query: 58 KELREAIQKIELNHKAKIGNT--KSIDSLISCSGLPISKQHYYIGSCVIGFIC-GVLSLT 114
+ +++ +++ E KAK + I +GL H+ I S V G + + +
Sbjct: 71 RSIQDQLKEFEERQKAKQDKQQKVPLKVKIEQAGLTWETHHFVIFSIVAGVVFLILGLII 130
Query: 115 LSSSFFTFLCVSVSSALVFPRFF 137
+ + + +L FPR++
Sbjct: 131 GGGNLYIAAGFGFAGSLGFPRWY 153
>gi|220922783|ref|YP_002498085.1| type II secretion system protein [Methylobacterium nodulans ORS
2060]
gi|219947390|gb|ACL57782.1| type II secretion system protein [Methylobacterium nodulans ORS
2060]
Length = 322
Score = 77.8 bits (190), Expect = 5e-13, Method: Composition-based stats.
Identities = 30/140 (21%), Positives = 60/140 (42%), Gaps = 8/140 (5%)
Query: 1 MFDVNSWFLVGLITVSVFCFLYAIFYNVINPGDSKSQDNAKVVRADRVIPTANTK---RR 57
M ++S + GL+ V+ YA ++ ++ + A R + RR
Sbjct: 1 MTSLDSLIVAGLLAVAAAALAYAFIVPLLPEQARAAKRQQAI--AGRRPVAERIQAVNRR 58
Query: 58 KELREAIQKIELNHKAKIGNTKSIDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLSS 117
++ ++++++E K S+D ++ SGL I+K +Y S + + V L LS
Sbjct: 59 DQVAKSLKELENKEKKA---RPSLDLRLTQSGLSITKPQFYAFSGIAAGLSAVTMLLLSG 115
Query: 118 SFFTFLCVSVSSALVFPRFF 137
S L + + L P++
Sbjct: 116 SLLLCLATAFVAGLGLPQWL 135
>gi|148258239|ref|YP_001242824.1| putative pilus assembly protein [Bradyrhizobium sp. BTAi1]
gi|146410412|gb|ABQ38918.1| putative pilus assembly protein [Bradyrhizobium sp. BTAi1]
Length = 324
Score = 77.8 bits (190), Expect = 5e-13, Method: Composition-based stats.
Identities = 22/123 (17%), Positives = 54/123 (43%), Gaps = 5/123 (4%)
Query: 17 VFCFLYAIFYNVINPGDSKSQDNAKVVRAD---RVIPTANTKRRKELREAIQKIELNHKA 73
+ + Y +++ Q + V +++ R RR+++ +++ +E KA
Sbjct: 16 IGGIAWVFLYPMLSGERKAEQRRSSVAKSEPVVRQAERNQRSRREQVESSLKDLEA--KA 73
Query: 74 KIGNTKSIDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLSSSFFTFLCVSVSSALVF 133
+ + ++ IS +GL + Q ++I S V+GF+ ++ L + ++
Sbjct: 74 QKQSKVPLNLRISQAGLDWTVQKFWIISGVLGFMAAAIAFFGGGGPLGALGLGFAAGFGL 133
Query: 134 PRF 136
PR+
Sbjct: 134 PRW 136
>gi|296444391|ref|ZP_06886356.1| Type II secretion system F domain protein [Methylosinus
trichosporium OB3b]
gi|296258038|gb|EFH05100.1| Type II secretion system F domain protein [Methylosinus
trichosporium OB3b]
Length = 322
Score = 77.8 bits (190), Expect = 5e-13, Method: Composition-based stats.
Identities = 34/140 (24%), Positives = 63/140 (45%), Gaps = 11/140 (7%)
Query: 2 FDVNSWFLVGLITVSVFCFLYAIFYNVINPGDSKSQDNAKVVRA--DRVI---PTANTKR 56
D S L ++V +YA+ Y ++ GD K+Q + A DR KR
Sbjct: 1 MDRQSLIGATLAALAVGGVMYAVVYPYLS-GDFKAQKRTAALMASGDRRREGRSADPAKR 59
Query: 57 RKELREAIQKIELNHKAKIGNTKSIDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLS 116
RK ++++++ IE K +++ I+ +GL +S+ + IG+ V G + S L+
Sbjct: 60 RKMIQDSLKDIETKAKQ-----ITLEQRIAQAGLAVSRSLFMIGAGVAGLFAALFSFILN 114
Query: 117 SSFFTFLCVSVSSALVFPRF 136
+ V V+ + P +
Sbjct: 115 QDPLLAIGVGVAVGVGLPHW 134
>gi|218530658|ref|YP_002421474.1| type II secretion system protein [Methylobacterium chloromethanicum
CM4]
gi|218522961|gb|ACK83546.1| type II secretion system protein [Methylobacterium chloromethanicum
CM4]
Length = 323
Score = 77.0 bits (188), Expect = 8e-13, Method: Composition-based stats.
Identities = 22/139 (15%), Positives = 56/139 (40%), Gaps = 5/139 (3%)
Query: 1 MFDVNSWFLVGLITVSVFCFLYAIFYNVINPGDSKSQDNAKVVRADRVIPT--ANTKRRK 58
M +N+ VGL+ V+ Y ++ Q + + V+ A RR+
Sbjct: 1 MSALNAPLAVGLVAVAAGSLAYVFLMPALSGERRAEQRRRALGQPQAVLAERGAAASRRE 60
Query: 59 ELREAIQKIELNHKAKIGNTKSIDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLSSS 118
++ ++++++E K +++ ++ +GL S+Q Y + S + + + + +S +
Sbjct: 61 QVAKSLKELEAK---KDKTKVTLELRLARAGLDWSRQKYRVVSAITAVVLALAAFLVSHN 117
Query: 119 FFTFLCVSVSSALVFPRFF 137
P ++
Sbjct: 118 VIVAGLALFVGGFGLPAWW 136
>gi|110632960|ref|YP_673168.1| type II secretion system protein [Mesorhizobium sp. BNC1]
gi|110283944|gb|ABG62003.1| type II secretion system protein [Chelativorans sp. BNC1]
Length = 338
Score = 75.9 bits (185), Expect = 2e-12, Method: Composition-based stats.
Identities = 23/138 (16%), Positives = 53/138 (38%), Gaps = 7/138 (5%)
Query: 7 WFLVGLITVSVFCFLYAIFYNVINPGDSKSQDNAKVVRADRV-----IPTANTKRRKELR 61
+ T+SV A+FY + + + RRK +
Sbjct: 14 LMVFAFATLSVGGVAAALFYPQFAKASPFRRRFQGLAALGEEEESTAPADEDRDRRKSVE 73
Query: 62 EAIQKIELNHKAKIGN--TKSIDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLSSSF 119
+ ++++E KAK ++ + +GL +++ Y+ V G + ++L L +
Sbjct: 74 KTLRELEEKQKAKTRKAGKPTLSGRLRQAGLSWNRRAYFTACAVCGALTFPVALLLGAGS 133
Query: 120 FTFLCVSVSSALVFPRFF 137
+ +++ L+ P F+
Sbjct: 134 LVSVGFALAGGLLLPHFY 151
>gi|83859361|ref|ZP_00952882.1| hypothetical protein OA2633_13190 [Oceanicaulis alexandrii
HTCC2633]
gi|83852808|gb|EAP90661.1| hypothetical protein OA2633_13190 [Oceanicaulis alexandrii
HTCC2633]
Length = 331
Score = 75.9 bits (185), Expect = 2e-12, Method: Composition-based stats.
Identities = 20/120 (16%), Positives = 56/120 (46%), Gaps = 7/120 (5%)
Query: 24 IFYNVINPGDSKSQDNAKV---VRADRVIP---TANTKRRKELREAIQKIELNHKAKIGN 77
+F K++ V V++ R A ++R++++E ++++E + KA+
Sbjct: 24 VFVGSSADKARKARLEGAVGGPVQSTRRRVGAVDAAAQKRRQIQEGLKELEDSQKAERKK 83
Query: 78 TKSIDSLISCSGL-PISKQHYYIGSCVIGFICGVLSLTLSSSFFTFLCVSVSSALVFPRF 136
+ ++ + + +GL ++I S ++GF+ + + + + ++ + L PR+
Sbjct: 84 SLTLRARLDQAGLFKTGPTQFWIFSAILGFVAAFMVVVTGLNILFAVAAAIIAGLGLPRW 143
>gi|300021858|ref|YP_003754469.1| type II secretion system protein F [Hyphomicrobium denitrificans
ATCC 51888]
gi|299523679|gb|ADJ22148.1| Type II secretion system F domain protein [Hyphomicrobium
denitrificans ATCC 51888]
Length = 332
Score = 73.2 bits (178), Expect = 1e-11, Method: Composition-based stats.
Identities = 26/130 (20%), Positives = 55/130 (42%), Gaps = 7/130 (5%)
Query: 12 LITVSVFCFLYAIFYNVINPGDSKSQDNAKVVRADRVIPTANTK----RRKELREAIQKI 67
L ++ +YA+ Y + K + VV R + A ++ R+K + + ++++
Sbjct: 17 LAALAFAGGIYALAYPYFSGDREKDKRLESVVGRSRKVGGALSEIQSSRKKSVADTLKEM 76
Query: 68 ELNHKAKIGNTKSIDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLSSSFFTFLCVS- 126
E AK ++ + +G+ + + +YIGS + G + G L + V+
Sbjct: 77 EDRQNAK--KKITMGLRLERAGVKWTPRDFYIGSAIAGIVLGGLCFNFLNLPIAATVVAL 134
Query: 127 VSSALVFPRF 136
A PR+
Sbjct: 135 FVGAFGIPRW 144
>gi|75674495|ref|YP_316916.1| type II secretion system protein [Nitrobacter winogradskyi Nb-255]
gi|74419365|gb|ABA03564.1| type II secretion system protein [Nitrobacter winogradskyi Nb-255]
Length = 324
Score = 72.8 bits (177), Expect = 2e-11, Method: Composition-based stats.
Identities = 25/139 (17%), Positives = 62/139 (44%), Gaps = 5/139 (3%)
Query: 2 FDVNSWFLVGLITVSVFCFLYAIFYNVINPGDSKSQDNAKVVR---ADRVIPTANTKRRK 58
++ + L + +V + Y V++ + A + R A R + A RR+
Sbjct: 1 MNLQTLALAFMAATAVGGVAWVFLYPVLSGEMKAEKRRAALARTSPAIRQVDRAQRSRRE 60
Query: 59 ELREAIQKIELNHKAKIGNTKSIDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLSSS 118
++ E++++IE + K ++++ I+ +GL SK+ + I S ++ + + L +
Sbjct: 61 QIEESLREIE--QRQKRDRKVTLNNRIAQAGLSWSKEKFLIVSGILALASFAVPIVLGAG 118
Query: 119 FFTFLCVSVSSALVFPRFF 137
++ ++ PR+
Sbjct: 119 PLAAAGLAFAAGFGVPRWL 137
>gi|323137429|ref|ZP_08072507.1| Type II secretion system F domain [Methylocystis sp. ATCC 49242]
gi|322397416|gb|EFX99939.1| Type II secretion system F domain [Methylocystis sp. ATCC 49242]
Length = 326
Score = 70.8 bits (172), Expect = 5e-11, Method: Composition-based stats.
Identities = 25/127 (19%), Positives = 51/127 (40%), Gaps = 12/127 (9%)
Query: 19 CFLYAIFYNVINPGDSKSQDNAKVVRADR--------VIPTANTKRRKELREAIQKIELN 70
+YA Y ++ G+ K+Q + + R KRRK + E+++++E
Sbjct: 17 GVMYAFVYPYLS-GEIKAQKRTAALTSGRSERGAVAGRGTVDPAKRRKMIAESLKEVENQ 75
Query: 71 HKAKIGNTKSIDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLSSSFFTFLCVSVSSA 130
+K K +++ I +GL + Q + IGS G + L ++ + +
Sbjct: 76 NKKK---KLTLEQRIMQAGLTWTPQVFLIGSVAFGLLVAFFLLVVNGDIMVVIGGAAVGI 132
Query: 131 LVFPRFF 137
P +
Sbjct: 133 FGLPNWL 139
>gi|302381752|ref|YP_003817575.1| type II secretion system F domain protein [Brevundimonas
subvibrioides ATCC 15264]
gi|302192380|gb|ADK99951.1| Type II secretion system F domain protein [Brevundimonas
subvibrioides ATCC 15264]
Length = 326
Score = 70.1 bits (170), Expect = 9e-11, Method: Composition-based stats.
Identities = 15/98 (15%), Positives = 42/98 (42%), Gaps = 3/98 (3%)
Query: 39 NAKVVRADRVIPTANTKRRKELREAIQKIELNHKAKIGNTKSIDSLISCSGLPISKQHYY 98
+A +V RRK + +++ E + ++ + + +G+ + + ++
Sbjct: 44 RTARAKAAKVEANTPEARRKAIELQLKEAERKERKA---RMTMKARLKHAGMSMGIRTFW 100
Query: 99 IGSCVIGFICGVLSLTLSSSFFTFLCVSVSSALVFPRF 136
I S +G + ++ L + F + +++ L PR+
Sbjct: 101 IISACLGVVAFLMPLVFGLNIFVAIGIALVVGLGLPRW 138
>gi|91977989|ref|YP_570648.1| type II secretion system protein [Rhodopseudomonas palustris BisB5]
gi|91684445|gb|ABE40747.1| type II secretion system protein [Rhodopseudomonas palustris BisB5]
Length = 324
Score = 70.1 bits (170), Expect = 1e-10, Method: Composition-based stats.
Identities = 22/139 (15%), Positives = 56/139 (40%), Gaps = 5/139 (3%)
Query: 2 FDVNSWFLVGLITVSVFCFLYAIFYNVINPGDSKSQDNAKVVR---ADRVIPTANTKRRK 58
+ + L V+V + Y +++ + + V R A R + RR+
Sbjct: 1 MQMQALSLGFFAAVAVGGLAWVFLYPMLSGEKQAEKRRSSVARVTPAVRQVERTQRSRRE 60
Query: 59 ELREAIQKIELNHKAKIGNTKSIDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLSSS 118
++ +++ IE K K N ++ + ++ +GL + + + S V+G +++
Sbjct: 61 QVEGSLRDIEAR-KQKQKN-VALSTRLTQAGLDWTPKKFITISAVLGVFVFAVTMLFGGG 118
Query: 119 FFTFLCVSVSSALVFPRFF 137
++ ++ PR+
Sbjct: 119 LTAAAGLAFAAGFGLPRWM 137
>gi|85713509|ref|ZP_01044499.1| type II secretion system protein [Nitrobacter sp. Nb-311A]
gi|85699413|gb|EAQ37280.1| type II secretion system protein [Nitrobacter sp. Nb-311A]
Length = 324
Score = 69.7 bits (169), Expect = 1e-10, Method: Composition-based stats.
Identities = 25/139 (17%), Positives = 59/139 (42%), Gaps = 5/139 (3%)
Query: 2 FDVNSWFLVGLITVSVFCFLYAIFYNVINPGDSKSQDNAKVVRAD---RVIPTANTKRRK 58
++ + L + +V + Y ++ + A R R + A RR+
Sbjct: 1 MNLQTLALGFMAATAVGGVAWVFLYPALSGEMKAEKRRAAFARTTPAIRQVDRAQRSRRE 60
Query: 59 ELREAIQKIELNHKAKIGNTKSIDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLSSS 118
++ ++++IE + K +++ I+ +GL SK+ + I S V+ IC + + L +
Sbjct: 61 QIEGSLREIE--QRQKRDRKLTLNHRIAQAGLSWSKEKFLIVSGVLAMICFSVPMILGAG 118
Query: 119 FFTFLCVSVSSALVFPRFF 137
++ ++ PR+
Sbjct: 119 PLAAAGLAFAAGFGVPRWL 137
>gi|27376546|ref|NP_768075.1| pilus assembly protein [Bradyrhizobium japonicum USDA 110]
gi|27349687|dbj|BAC46700.1| pilus assembly protein [Bradyrhizobium japonicum USDA 110]
Length = 340
Score = 69.7 bits (169), Expect = 1e-10, Method: Composition-based stats.
Identities = 20/124 (16%), Positives = 51/124 (41%), Gaps = 6/124 (4%)
Query: 17 VFCFLYAIFYNVINPGDSKSQDNAKVVRADRVIPTANTK----RRKELREAIQKIELNHK 72
V + Y +++ A + RAD K RR+++ +++ +E +
Sbjct: 31 VGGIAWVFLYPLLSGERKAENRRASIARADAPAAKQTEKSQRSRREQVETSLKDLEARRQ 90
Query: 73 AKIGNTKSIDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLSSSFFTFLCVSVSSALV 132
+ + ++ +S +GL + Q ++I S V+ + V ++ + ++ +
Sbjct: 91 QE--KSVPLNIRLSQAGLDWTPQKFWIVSAVVAGVLFVAAMFVGGGLLGGAGLAFAGGFG 148
Query: 133 FPRF 136
PR+
Sbjct: 149 LPRW 152
>gi|254420696|ref|ZP_05034420.1| Bacterial type II secretion system protein F domain [Brevundimonas
sp. BAL3]
gi|196186873|gb|EDX81849.1| Bacterial type II secretion system protein F domain [Brevundimonas
sp. BAL3]
Length = 326
Score = 66.2 bits (160), Expect = 1e-09, Method: Composition-based stats.
Identities = 21/81 (25%), Positives = 38/81 (46%), Gaps = 3/81 (3%)
Query: 56 RRKELREAIQKIELNHKAKIGNTKSIDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTL 115
RRK++ +Q+ E + N + + + +GL IS + +YI S +G I V +L
Sbjct: 61 RRKQIMVQLQEAERRERKARAN---MAAKLKQAGLTISVRTFYIVSGGVGLIAAVAALAF 117
Query: 116 SSSFFTFLCVSVSSALVFPRF 136
L +++ L PR+
Sbjct: 118 GLHVLIVLGLAIVVGLGLPRW 138
>gi|90425201|ref|YP_533571.1| type II secretion system protein [Rhodopseudomonas palustris
BisB18]
gi|90107215|gb|ABD89252.1| type II secretion system protein [Rhodopseudomonas palustris
BisB18]
Length = 324
Score = 66.2 bits (160), Expect = 1e-09, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 60/136 (44%), Gaps = 5/136 (3%)
Query: 4 VNSWFLVGLITVSVFCFLYAIFYNVINPGDSKSQDNAKVVRAD---RVIPTANTKRRKEL 60
+ + + L ++V + Y ++ + Q A + R + R I RR+++
Sbjct: 3 IQTLAIAFLSAMAVGGLAWVFIYPSLSGQKTAEQRRASLARPEPVVRQIDRTQRSRREQV 62
Query: 61 REAIQKIELNHKAKIGNTKSIDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLSSSFF 120
+++++E H+ + ++ + ++ +G+ + + + IGS V+G ++ L
Sbjct: 63 EGSLKEVEARHRKE--KKVALTTRLTQAGVKWTPKGFLIGSAVLGVTMFAITSLLGGGLL 120
Query: 121 TFLCVSVSSALVFPRF 136
L + ++ PR+
Sbjct: 121 AALALGFAAGFGLPRW 136
>gi|220923699|ref|YP_002499001.1| type II secretion system protein [Methylobacterium nodulans ORS
2060]
gi|219948306|gb|ACL58698.1| type II secretion system protein [Methylobacterium nodulans ORS
2060]
Length = 327
Score = 65.8 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 21/136 (15%), Positives = 48/136 (35%), Gaps = 5/136 (3%)
Query: 7 WFLVGLITVSVFCFLYAIFYNVINPGDSKSQDNAKVVRA----DRVIPTANTKRRKELRE 62
+ L S L A F+ + + + V + R + + +R++ ++E
Sbjct: 5 LLVFFLGAFSTGGLLLAAFHPRLARTSALDRRLQLVRASAGQTTRAAGSDDNRRKRSVQE 64
Query: 63 AIQKIELNHKAKIGNTKSIDSLISCSGLPISKQHYYIGSCVIG-FICGVLSLTLSSSFFT 121
+++ E KAK S+ + + L SK YY +G + +
Sbjct: 65 LLRETEQKQKAKNSAKLSLVMRLRQADLGWSKSTYYTICLTVGTLAFLAMWGLMGLGLLP 124
Query: 122 FLCVSVSSALVFPRFF 137
+ + ++ P +
Sbjct: 125 AVGFGLCGGMLLPHLY 140
>gi|254293218|ref|YP_003059241.1| type II secretion system protein [Hirschia baltica ATCC 49814]
gi|254041749|gb|ACT58544.1| type II secretion system protein [Hirschia baltica ATCC 49814]
Length = 331
Score = 65.8 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 51/136 (37%), Gaps = 6/136 (4%)
Query: 7 WFLVGLITVSVFCFLYAIFYNVINPGDSKSQDNAKVVRA----DRVIPTANTKRRKELRE 62
+ + GL VSV +A K V A RRK++++
Sbjct: 8 YLIAGLAFVSVVGVGFAFTGGGTTKAQQKRFKQVAVGAGSGGKKNSSVDATLMRRKQMQD 67
Query: 63 AIQKIELNHKAKIGNTK--SIDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLSSSFF 120
+++ + + +T+ +I ++ +G I +++ S V G + ++ L +
Sbjct: 68 SMKTLRERENKRRKDTRGRTIKDKLAQAGWTIEPAMFWVLSAVTGVVVAGITFVLGQTPL 127
Query: 121 TFLCVSVSSALVFPRF 136
+ AL PR+
Sbjct: 128 IIAGAGFAGALGLPRW 143
>gi|192292570|ref|YP_001993175.1| type II secretion system protein [Rhodopseudomonas palustris TIE-1]
gi|192286319|gb|ACF02700.1| type II secretion system protein [Rhodopseudomonas palustris TIE-1]
Length = 324
Score = 65.5 bits (158), Expect = 2e-09, Method: Composition-based stats.
Identities = 20/138 (14%), Positives = 57/138 (41%), Gaps = 5/138 (3%)
Query: 2 FDVNSWFLVGLITVSVFCFLYAIFYNVINPGDSKSQDNAKVVRAD---RVIPTANTKRRK 58
++ + L ++V + Y +++ + Q V R+ R RR+
Sbjct: 1 MEMQTLALGFFAAIAVGGVAWVFVYPLLSGEKTVEQRLTFVARSTPTVRQADRTQRSRRE 60
Query: 59 ELREAIQKIELNHKAKIGNTKSIDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLSSS 118
++ ++++IE ++ + + + +S +GL + + + S +G +++ L +S
Sbjct: 61 QIEGSLKEIETRNEKQKN--VPLTAKLSQAGLDWTPGKFGVVSASLGIFMLGIAIILGAS 118
Query: 119 FFTFLCVSVSSALVFPRF 136
+ ++ PR+
Sbjct: 119 LPAAAGLGFAAGFGLPRW 136
>gi|254473793|ref|ZP_05087188.1| type II secretion system protein [Pseudovibrio sp. JE062]
gi|211957179|gb|EEA92384.1| type II secretion system protein [Pseudovibrio sp. JE062]
Length = 339
Score = 65.5 bits (158), Expect = 2e-09, Method: Composition-based stats.
Identities = 27/138 (19%), Positives = 52/138 (37%), Gaps = 7/138 (5%)
Query: 7 WFLVGLITVSVFCFLYAIFYNVINPGDSKSQDNAKVVRA-----DRVIPTANTKRRKELR 61
+ + LI +SV + + + + + + V + T RRK ++
Sbjct: 15 YLITALIMISVVGVTFTLLAPLFSKDKLGKRKESLVQKDISGLKGSNKKLDITARRKSVQ 74
Query: 62 EAIQKIELNHKAKIGNT--KSIDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLSSSF 119
+ + +E AK N I +GL +K YY S + G + ++S+ S
Sbjct: 75 DQLNAMEAAQAAKKKNADKPIFADWIGQAGLNWTKPRYYAYSVICGVLLFLVSMLSGQSI 134
Query: 120 FTFLCVSVSSALVFPRFF 137
+ L + PRF+
Sbjct: 135 WISLALLFVGIFGLPRFY 152
>gi|39936744|ref|NP_949020.1| type II secretion system protein [Rhodopseudomonas palustris
CGA009]
gi|39650600|emb|CAE29123.1| conserved unknown protein [Rhodopseudomonas palustris CGA009]
Length = 324
Score = 65.5 bits (158), Expect = 3e-09, Method: Composition-based stats.
Identities = 21/138 (15%), Positives = 57/138 (41%), Gaps = 5/138 (3%)
Query: 2 FDVNSWFLVGLITVSVFCFLYAIFYNVINPGDSKSQDNAKVVRAD---RVIPTANTKRRK 58
++ + L ++V + Y +++ + Q V R+ R RR+
Sbjct: 1 MEMQTLALGFFAAIAVGGVAWVFVYPLLSGEKTVEQRLTFVARSTPTVRQADRTQRSRRE 60
Query: 59 ELREAIQKIELNHKAKIGNTKSIDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLSSS 118
++ +I++IE ++ + + + +S +GL + + + S +G +++ L +S
Sbjct: 61 QIEGSIKEIETRNEKQKN--VPLTAKLSQAGLDWTPGKFGVVSASLGIFMLGIAIILGAS 118
Query: 119 FFTFLCVSVSSALVFPRF 136
+ ++ PR+
Sbjct: 119 LPAAAGLGFAAGFGLPRW 136
>gi|167648148|ref|YP_001685811.1| type II secretion system protein [Caulobacter sp. K31]
gi|167350578|gb|ABZ73313.1| type II secretion system protein [Caulobacter sp. K31]
Length = 325
Score = 64.7 bits (156), Expect = 4e-09, Method: Composition-based stats.
Identities = 25/138 (18%), Positives = 52/138 (37%), Gaps = 11/138 (7%)
Query: 7 WFLVGLITVSVFCFLYAIFYNVINPGDSKSQDNAKVVRADRVIPTANTK--------RRK 58
+ + G++ L + + + DR A K RRK
Sbjct: 3 FIIAGVLGFITIAGLGFVLAGGDGGSAKTVKRAQLIAGGDRQAVAARAKAAANSPDARRK 62
Query: 59 ELREAIQKIELNHKAKIGNTKSIDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLSSS 118
++ ++ ++ + K + SI + + +GL + ++++I S VIG G + L L
Sbjct: 63 QI---LKTLKEQDQQKKKASLSIAARLRAAGLGDNTRNFWIISGVIGLTAGAILLLLRQM 119
Query: 119 FFTFLCVSVSSALVFPRF 136
L + + PR+
Sbjct: 120 PLIALGAAFGAGFGLPRW 137
>gi|315497461|ref|YP_004086265.1| type II secretion system f domain protein [Asticcacaulis
excentricus CB 48]
gi|315415473|gb|ADU12114.1| Type II secretion system F domain protein [Asticcacaulis
excentricus CB 48]
Length = 326
Score = 64.7 bits (156), Expect = 4e-09, Method: Composition-based stats.
Identities = 18/107 (16%), Positives = 45/107 (42%), Gaps = 7/107 (6%)
Query: 31 PGDSKSQDNAKVVRADRVIPTANTKRRKELREAIQKIELNHKAKIGNTKSIDSLISCSGL 90
+ ++ ++ A+R +RRK++ +++ E + S+ + + +GL
Sbjct: 40 GATTAAKRKSQRTAANRTP----EERRKQILLQLKESEQRERKA---RLSLTARLQHAGL 92
Query: 91 PISKQHYYIGSCVIGFICGVLSLTLSSSFFTFLCVSVSSALVFPRFF 137
+ + ++I S +G V+ L +S L + PR++
Sbjct: 93 TPNVKTFWIWSVALGIAAAVIVLVVSRIPLAALGAGFAFGYGAPRWW 139
>gi|329890993|ref|ZP_08269336.1| bacterial type II secretion system protein F domain protein
[Brevundimonas diminuta ATCC 11568]
gi|328846294|gb|EGF95858.1| bacterial type II secretion system protein F domain protein
[Brevundimonas diminuta ATCC 11568]
Length = 327
Score = 64.7 bits (156), Expect = 4e-09, Method: Composition-based stats.
Identities = 18/81 (22%), Positives = 41/81 (50%), Gaps = 3/81 (3%)
Query: 56 RRKELREAIQKIELNHKAKIGNTKSIDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTL 115
RRK++ +Q+++ + ++ + + +GL +S + + I S G + +L+ L
Sbjct: 62 RRKQILLQLQEVDRRERKA---RMTMGAKLKQAGLSLSVRTFVIISVAAGLVGALLAFVL 118
Query: 116 SSSFFTFLCVSVSSALVFPRF 136
++ L V V++ L PR+
Sbjct: 119 GANIIIVLGVGVAAGLGLPRW 139
>gi|304392380|ref|ZP_07374321.1| type II secretion system protein [Ahrensia sp. R2A130]
gi|303295484|gb|EFL89843.1| type II secretion system protein [Ahrensia sp. R2A130]
Length = 332
Score = 64.3 bits (155), Expect = 6e-09, Method: Composition-based stats.
Identities = 27/125 (21%), Positives = 54/125 (43%), Gaps = 10/125 (8%)
Query: 22 YAIFYNVINPGDSKSQDNAKVVRADR-------VIPTANTKRRKELREAIQKIE-LNHKA 73
YA+ YN I D KS++ + ++ D+ +RRK A++ ++ K
Sbjct: 22 YALLYNSI-ASDKKSKERMQRLQMDKKTKMKVESRKMDEKQRRKSREAALKNVDDQKSKG 80
Query: 74 KIGNTKSIDSLISCSGLPISKQHYYIGSCVIGFICGVLSLT-LSSSFFTFLCVSVSSALV 132
K ++ ++ +G IS +Y+ S VIG + ++L + ++ V
Sbjct: 81 KTAGKETFREILEQAGFTISLGKFYVVSAVIGILFFFIALVFMGATLPIAGGVGFVMGFG 140
Query: 133 FPRFF 137
PR++
Sbjct: 141 APRWW 145
>gi|150377236|ref|YP_001313831.1| type II secretion system protein [Sinorhizobium medicae WSM419]
gi|150031783|gb|ABR63898.1| type II secretion system protein [Sinorhizobium medicae WSM419]
Length = 332
Score = 63.9 bits (154), Expect = 6e-09, Method: Composition-based stats.
Identities = 25/136 (18%), Positives = 52/136 (38%), Gaps = 6/136 (4%)
Query: 8 FLVGLITVSVFCFLYAIFYNVINPGDSKSQDNAKVVR---ADRVIPT--ANTKRRKELRE 62
F+ L + S+ + A FY ++ + Q A++ R PT RR+ + +
Sbjct: 10 FVFLLASTSIGGVMVAAFYPRVSKASAYRQRLARMSAPAENKRSEPTEPDGRDRRRSVEK 69
Query: 63 AIQKIEL-NHKAKIGNTKSIDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLSSSFFT 121
+++IE ++ + + SGL S + Y++ L L +
Sbjct: 70 TLREIEEKRQANARKGKTTLTARLRQSGLHWSPKTYFVVCACAALASWCAMLLLDTGALV 129
Query: 122 FLCVSVSSALVFPRFF 137
++S L+ P +
Sbjct: 130 SAGFAISGGLLLPHVY 145
>gi|316933035|ref|YP_004108017.1| Type II secretion system F domain [Rhodopseudomonas palustris DX-1]
gi|315600749|gb|ADU43284.1| Type II secretion system F domain [Rhodopseudomonas palustris DX-1]
Length = 324
Score = 63.9 bits (154), Expect = 7e-09, Method: Composition-based stats.
Identities = 20/138 (14%), Positives = 56/138 (40%), Gaps = 5/138 (3%)
Query: 2 FDVNSWFLVGLITVSVFCFLYAIFYNVINPGDSKSQDNAKVVR---ADRVIPTANTKRRK 58
++ + L V+V + Y +++ + + V R A R + RR+
Sbjct: 1 MEMQTLALGFFAAVAVGGVAWVFIYPLLSGEKNVEKRLTSVARTTPAVRQVDRTQRSRRE 60
Query: 59 ELREAIQKIELNHKAKIGNTKSIDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLSSS 118
++ ++++IE + + + +S +GL + + + S IG + +++ + +
Sbjct: 61 QIEGSLKEIETRSQKQKN--VPLGMRLSQAGLDWTPAKFGVVSAAIGVVVLGIAIMIGTG 118
Query: 119 FFTFLCVSVSSALVFPRF 136
+ ++ PR+
Sbjct: 119 LVAAAGLGFAAGFGLPRW 136
>gi|227818620|ref|YP_002822591.1| pilus assembly protein TadB [Sinorhizobium fredii NGR234]
gi|36958876|gb|AAQ87301.1| TadB-like protein involved in pilus formation and/or protein
secretion [Sinorhizobium fredii NGR234]
gi|227337619|gb|ACP21838.1| pilus assembly protein TadB [Sinorhizobium fredii NGR234]
Length = 332
Score = 63.5 bits (153), Expect = 9e-09, Method: Composition-based stats.
Identities = 27/135 (20%), Positives = 51/135 (37%), Gaps = 6/135 (4%)
Query: 8 FLVGLITVSVFCFLYAIFYNVINPGDSKSQDNAKVVRADRV----IPTANTKRRKELREA 63
+ L + V + A FY + Q +V ++ + RR+ + +
Sbjct: 10 LIFFLASSFVGGLMLAAFYPRTVKASAYRQRFERVAGHTQINRTGSADESRDRRRSVEKT 69
Query: 64 IQKIELNHKA--KIGNTKSIDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLSSSFFT 121
++ IE KA + G +++ + +GL S + Y++ G VL L F
Sbjct: 70 LRDIEEQQKAHVRKGRKPKLEARLRQAGLGWSTRAYWVACAGTGLAIYVLVALLGLGAFA 129
Query: 122 FLCVSVSSALVFPRF 136
L + + L P F
Sbjct: 130 ALGFATAGGLYLPHF 144
>gi|329847257|ref|ZP_08262285.1| bacterial type II secretion system protein F domain protein
[Asticcacaulis biprosthecum C19]
gi|328842320|gb|EGF91889.1| bacterial type II secretion system protein F domain protein
[Asticcacaulis biprosthecum C19]
Length = 337
Score = 60.1 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 18/100 (18%), Positives = 41/100 (41%), Gaps = 9/100 (9%)
Query: 43 VRADRVIPTANTKRRKELREAIQKIELNHKAKIGNTKSIDSLISCSGLPISKQHYYIGSC 102
R + + +RRK++ E +++ E + ++ S + +GL + ++I +
Sbjct: 53 KRGGKSAAKSPEERRKQITEQLKEAEKRERKA---RLTLRSRMLHAGLTPNVTQFWIITA 109
Query: 103 VIGFICGVLSLTLSSSF------FTFLCVSVSSALVFPRF 136
V+G + V+ L L L + + PR+
Sbjct: 110 VLGVVAFVVPLVLLGKMDFMLRLLVALGAGFALSYGAPRW 149
>gi|307318084|ref|ZP_07597520.1| Type II secretion system F domain protein [Sinorhizobium meliloti
AK83]
gi|306896125|gb|EFN26875.1| Type II secretion system F domain protein [Sinorhizobium meliloti
AK83]
Length = 333
Score = 59.7 bits (143), Expect = 1e-07, Method: Composition-based stats.
Identities = 24/137 (17%), Positives = 54/137 (39%), Gaps = 7/137 (5%)
Query: 8 FLVGLITVSVFCFLYAIFYNVINPGDSKSQDNAKVVR---ADRVIP--TANTKRRKELRE 62
F+ L + S+ + A FY ++ + Q ++ R P T RR+ + +
Sbjct: 10 FVFLLASTSIGGMMVAAFYPRVSKASAYRQRFERISARAEDKRSEPAETDGRDRRRSVEK 69
Query: 63 AIQKIEL-NHKAKIGNTKSIDSLISCSGLPISKQHYYIGSCVIGFIC-GVLSLTLSSSFF 120
+++IE ++ + + SGL S++ Y++ V+ L L
Sbjct: 70 TLREIEEKRQANARKGKVTLSARLRQSGLHWSRKAYFLVCAGAALATWVVMLLLLGLGPL 129
Query: 121 TFLCVSVSSALVFPRFF 137
+ +++ L+ P +
Sbjct: 130 VSVGFAIAGGLLLPHLY 146
>gi|295690794|ref|YP_003594487.1| type II secretion system F domain-containing protein [Caulobacter
segnis ATCC 21756]
gi|295432697|gb|ADG11869.1| Type II secretion system F domain protein [Caulobacter segnis ATCC
21756]
Length = 325
Score = 59.3 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 25/141 (17%), Positives = 58/141 (41%), Gaps = 15/141 (10%)
Query: 7 WFLVGLIT-VSVFCFLYAIFYNVINPGDSKSQDNAKVVRADRVIPTANTK---------R 56
+ L G++ +++ +A + + A+V+ A V A R
Sbjct: 3 FILAGVLGFITIAGLGFAFVGDDSQASK--AAKRAQVIGAGGVDRQAAKNKPAANPNEVR 60
Query: 57 RKELREAIQKIELNHKAKIGNTKSIDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLS 116
R+ + +A+++ E K T SI + + +GL + + +++ S + ++ L L
Sbjct: 61 RQTILKALKEQERKQKKA---TLSIAARMQAAGLGPNVRLFWMVSLGLAVGVILIVLALG 117
Query: 117 SSFFTFLCVSVSSALVFPRFF 137
+ + L ++ L PR+
Sbjct: 118 QTVWIALGAGFAAGLGLPRWL 138
>gi|16263304|ref|NP_436097.1| Pilus assembly protein [Sinorhizobium meliloti 1021]
gi|307304377|ref|ZP_07584128.1| Type II secretion system F domain protein [Sinorhizobium meliloti
BL225C]
gi|14523983|gb|AAK65509.1| Pilus assembly protein [Sinorhizobium meliloti 1021]
gi|306902579|gb|EFN33173.1| Type II secretion system F domain protein [Sinorhizobium meliloti
BL225C]
Length = 333
Score = 58.5 bits (140), Expect = 3e-07, Method: Composition-based stats.
Identities = 24/137 (17%), Positives = 54/137 (39%), Gaps = 7/137 (5%)
Query: 8 FLVGLITVSVFCFLYAIFYNVINPGDSKSQDNAKVVR---ADRVIP--TANTKRRKELRE 62
F+ L + S+ + A FY ++ + Q ++ R P T RR+ + +
Sbjct: 10 FVFLLASTSIGGMMVAAFYPRVSKASAYRQRFERISARAEDKRSEPAETDGRDRRRSVEK 69
Query: 63 AIQKIEL-NHKAKIGNTKSIDSLISCSGLPISKQHYYIGSCVIGFIC-GVLSLTLSSSFF 120
+++IE ++ + + SGL S++ Y++ V+ L L
Sbjct: 70 TLREIEEKRQANARKGKVTLSARLRQSGLHWSRKAYFLVCAGATLATWVVMLLLLGLGPL 129
Query: 121 TFLCVSVSSALVFPRFF 137
+ +++ L+ P +
Sbjct: 130 VSVGFAIAGGLLLPHLY 146
>gi|114798049|ref|YP_761687.1| secretion system protein [Hyphomonas neptunium ATCC 15444]
gi|114738223|gb|ABI76348.1| secretion system protein [Hyphomonas neptunium ATCC 15444]
Length = 339
Score = 56.2 bits (134), Expect = 1e-06, Method: Composition-based stats.
Identities = 25/152 (16%), Positives = 54/152 (35%), Gaps = 26/152 (17%)
Query: 7 WFLVGLITVSVFCFLYAIFYNVINPGDSKSQDNAKVVRADR--------VIPTANTKRRK 58
+ + L +++ + D ++ A+ + A R + N +RR
Sbjct: 4 YIVAALAFLAIAGLGLVL----TGGNDDAARKRARAISAGRGGAPVKGGKVVDENIRRRA 59
Query: 59 ELREAIQKIELNHKAKIGNTK--SIDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLS 116
+ +E ++ + K + N +I S ++ +GL I +++ S V G IC +
Sbjct: 60 KTQEMLEGLRRQDKERRRNDPMRNIGSKLTQAGLEIPVPMFWLLSAVCGLICAGIVYISG 119
Query: 117 SSFFTFLCVS------------VSSALVFPRF 136
+ +S L P+F
Sbjct: 120 ADGLVINGISLKSRPVLIAAAFFGGTLGIPQF 151
>gi|218682228|ref|ZP_03529829.1| probable pilus assembly protein [Rhizobium etli CIAT 894]
Length = 90
Score = 54.7 bits (130), Expect = 4e-06, Method: Composition-based stats.
Identities = 15/53 (28%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
Query: 27 NVINPGDSKSQDNAKVVRADRVIPTANTKRRKELREAIQKIELNHKAKIGNTK 79
+ IN S D KV A R +KRRK +++ ++ +E K T
Sbjct: 39 SRINRVKSAEVDRVKVKAA-RDRVQELSKRRKSVQDNLKDLEKRQHEKTKKTL 90
>gi|16127171|ref|NP_421735.1| hypothetical protein CC_2941 [Caulobacter crescentus CB15]
gi|221235972|ref|YP_002518409.1| TadB-like pilus assembly protein [Caulobacter crescentus NA1000]
gi|7208429|gb|AAF40196.1|AF229646_8 TadB [Caulobacter crescentus CB15]
gi|13424567|gb|AAK24903.1| hypothetical protein CC_2941 [Caulobacter crescentus CB15]
gi|220965145|gb|ACL96501.1| TadB-related pilus assembly protein [Caulobacter crescentus NA1000]
Length = 325
Score = 54.3 bits (129), Expect = 5e-06, Method: Composition-based stats.
Identities = 22/138 (15%), Positives = 50/138 (36%), Gaps = 11/138 (7%)
Query: 7 WFLVGLITVSVFCFLYAIFYNVINPGDSKSQDNAKVVRADRVIPTANTK--------RRK 58
+ L G++ L F + ++ + + K RR+
Sbjct: 3 FVLAGILGFITIAGLGFAFAGGDSASSKAAKRAQIIAKGGERQANVRAKAAANTPDARRQ 62
Query: 59 ELREAIQKIELNHKAKIGNTKSIDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLSSS 118
+ +A++ + K + SI + + +GL + + ++I S +G ++ L L S
Sbjct: 63 AILKALKDQDRKQKKA---SLSIAARLQAAGLGDNVKMFWIVSGTLGLFIAMIILLLGQS 119
Query: 119 FFTFLCVSVSSALVFPRF 136
L ++ PR+
Sbjct: 120 PLVALGAGFAAGAGLPRW 137
>gi|170750193|ref|YP_001756453.1| type II secretion system protein [Methylobacterium radiotolerans
JCM 2831]
gi|170656715|gb|ACB25770.1| type II secretion system protein [Methylobacterium radiotolerans
JCM 2831]
Length = 325
Score = 50.4 bits (119), Expect = 7e-05, Method: Composition-based stats.
Identities = 22/111 (19%), Positives = 50/111 (45%), Gaps = 4/111 (3%)
Query: 8 FLVGLITVSVFCFLYAIFYNVINPGDSKSQDNAKVVRADRVIPTA--NTKRRKELREAIQ 65
GL+ ++V Y ++ ++ + + T RR+++ + +
Sbjct: 9 IAAGLVGIAVAAVAYVAVLPLLGGERRANKRLKSISVSASGAATRGVAVNRREQVAKTLS 68
Query: 66 KIELNHKAKIGNTKSIDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLS 116
+IE KAK + S++ ++ +GL +KQ +Y S + G + G+L ++
Sbjct: 69 EIEA--KAKGASKASVELKLARAGLGWTKQTFYGMSALSGVVFGLLLFVIT 117
>gi|94497257|ref|ZP_01303829.1| hypothetical protein SKA58_13683 [Sphingomonas sp. SKA58]
gi|94423362|gb|EAT08391.1| hypothetical protein SKA58_13683 [Sphingomonas sp. SKA58]
Length = 332
Score = 42.0 bits (97), Expect = 0.028, Method: Composition-based stats.
Identities = 24/131 (18%), Positives = 43/131 (32%), Gaps = 5/131 (3%)
Query: 12 LITVSVFCFLYAIFYNVINPGDSKSQDNAKVVRADRVIPTANTKRRKELREAIQKIELNH 71
LI V + L + P K++ R +A +R AI
Sbjct: 7 LIAVLLAAMLGMVAMAFAGPSPEKARKRRVATIRGRHGESAEALLEARMRRAISNRPTGA 66
Query: 72 KAK-----IGNTKSIDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLSSSFFTFLCVS 126
+AK + N ++ I +G + Y +I + L FF + V
Sbjct: 67 EAKMLVSLVPNPDNLTKRIKMTGKKWTLSQYMTACAIIFLLITALLALRGFPFFFAMLVG 126
Query: 127 VSSALVFPRFF 137
++ L P ++
Sbjct: 127 AAAGLGLPHWW 137
>gi|328952511|ref|YP_004369845.1| Type II secretion system F domain protein [Desulfobacca acetoxidans
DSM 11109]
gi|328452835|gb|AEB08664.1| Type II secretion system F domain protein [Desulfobacca acetoxidans
DSM 11109]
Length = 317
Score = 41.2 bits (95), Expect = 0.050, Method: Composition-based stats.
Identities = 18/127 (14%), Positives = 53/127 (41%), Gaps = 4/127 (3%)
Query: 8 FLVGLITVSVFCFLYAIFYNVINPGDSKSQDNAKVVRADRVIPTANTKRRKELREAIQKI 67
+ GL+ ++VF + A ++ + ++ + + R + +R+ + +
Sbjct: 4 LIAGLVFLTVFGLVLAFYFGYEDLKQARKDQLIRSLTVGRRRG-DRMPEEEAVRQETRFL 62
Query: 68 ELNHKAKIGNTKSIDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLSSSFFTFLCVSV 127
+ + +++LI + +S + +++ S GF+ +L L L + ++
Sbjct: 63 TML--LTRVDLSGLETLIQSAWAGLSLERFFLVSVCCGFVFMLLPLLLFGNAVLSF-LAF 119
Query: 128 SSALVFP 134
++ L P
Sbjct: 120 AAGLCLP 126
>gi|46201039|ref|ZP_00055942.2| COG4965: Flp pilus assembly protein TadB [Magnetospirillum
magnetotacticum MS-1]
Length = 331
Score = 40.8 bits (94), Expect = 0.055, Method: Composition-based stats.
Identities = 19/131 (14%), Positives = 44/131 (33%), Gaps = 5/131 (3%)
Query: 8 FLVGLITVSVFCFLYAIFYNVINPGDSKSQDNAKVVRAD---RVIPTANTKRRKELREAI 64
LV ++ V++ +++F + P + A V +RK ++ +
Sbjct: 14 VLVAVMLVTLAVLGWSLFTLLHGPRARLKRRLAAVAGGSHGAERRLAGRMPQRKSVQARL 73
Query: 65 QKIELNHKAKIGNTKSIDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLSSSFFTFLC 124
+ +E G + + +G + HY GS + L L +
Sbjct: 74 KAVEGARARNFGWR--LREQLLQAGWNLEVWHYLAGSGGLTLAVFALGQVLGLAMVWSGL 131
Query: 125 VSVSSALVFPR 135
++ + P+
Sbjct: 132 AALCLGVGVPK 142
>gi|289616194|emb|CBI56990.1| unnamed protein product [Sordaria macrospora]
Length = 1134
Score = 39.6 bits (91), Expect = 0.16, Method: Composition-based stats.
Identities = 14/56 (25%), Positives = 26/56 (46%)
Query: 33 DSKSQDNAKVVRADRVIPTANTKRRKELREAIQKIELNHKAKIGNTKSIDSLISCS 88
D AK V A++ + A KRR+E+++ I+K+ K ++ + S
Sbjct: 1048 DEVEARRAKAVEAEKEMSLAREKRREEMQQQIKKLAEAQAQKTAAAPAVADQVVTS 1103
>gi|83312844|ref|YP_423108.1| Flp pilus assembly protein TadB [Magnetospirillum magneticum AMB-1]
gi|82947685|dbj|BAE52549.1| Flp pilus assembly protein TadB [Magnetospirillum magneticum AMB-1]
Length = 330
Score = 39.3 bits (90), Expect = 0.17, Method: Composition-based stats.
Identities = 13/114 (11%), Positives = 36/114 (31%), Gaps = 5/114 (4%)
Query: 25 FYNVINPGDSKSQDNAKVVRADRVIPTANTKR---RKELREAIQKIELNHKAKIGNTKSI 81
++I+ ++ + V + R RK ++ ++ +E + + G
Sbjct: 30 LVSLIHGPRARLKRRLAAVAGGQTSSRRTAVRGPQRKSVQARLKAVEGSRQRHFGWR--F 87
Query: 82 DSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLSSSFFTFLCVSVSSALVFPR 135
+ +G + Y G V+ + + ++ L P+
Sbjct: 88 REQLMQAGWRLEVWQYLAGCAVLALLVLGIGEASGLPLVWSGLAALCLGLGIPK 141
>gi|268325260|emb|CBH38848.1| hypothetical membrane protein [uncultured archaeon]
Length = 442
Score = 38.9 bits (89), Expect = 0.26, Method: Composition-based stats.
Identities = 22/125 (17%), Positives = 43/125 (34%), Gaps = 4/125 (3%)
Query: 7 WFLVGLITVSVFCFLYAIFYNVINPGDSKSQDNAKVVRADRVIPTANTKRRKELREAIQK 66
W ++ + ++S+ + A Y D + A +++ A + E I
Sbjct: 177 WRIIVIYSLSLIILIAAAVYYSTRAADYTLLSRIQKEAASQILDIAIADDKDISSENITN 236
Query: 67 IELNHKAKIGNTKSIDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLSSSFFTFLCVS 126
+ + I N KS+ +S + S V G I ++ L S+ +
Sbjct: 237 LSKSLNTTIKNVKSMMYKLS----NMLSAKELAVSGVFGAIALFVAFILGSAILMATGIP 292
Query: 127 VSSAL 131
S L
Sbjct: 293 ASGGL 297
>gi|294012436|ref|YP_003545896.1| Flp pilus assembly protein TadB [Sphingobium japonicum UT26S]
gi|292675766|dbj|BAI97284.1| Flp pilus assembly protein TadB [Sphingobium japonicum UT26S]
Length = 332
Score = 38.1 bits (87), Expect = 0.38, Method: Composition-based stats.
Identities = 20/128 (15%), Positives = 43/128 (33%), Gaps = 5/128 (3%)
Query: 12 LITVSVFCFLYAIFYNVINPGDSKSQDNAKVVRADRVIPTANTKRRKELREAIQKIELNH 71
L+ V + L + P K+Q + R + + +R+AI +
Sbjct: 7 LMAVLLATMLGLVVMAFSGPSPEKAQKRRMELIRGRHSDSTDAILEARMRKAISNRPAGN 66
Query: 72 KAK-----IGNTKSIDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLSSSFFTFLCVS 126
+A + N +++ I +G + Y VI L + + +
Sbjct: 67 EASMLVSLVPNPENLAKRIRMTGKKWTVSQYMTACAVIFLALCALLMLRGFPPLFAVMLG 126
Query: 127 VSSALVFP 134
+++ L P
Sbjct: 127 LAAGLGLP 134
>gi|228982434|ref|ZP_04142693.1| hypothetical protein bthur0002_55670 [Bacillus thuringiensis Bt407]
gi|228776617|gb|EEM24925.1| hypothetical protein bthur0002_55670 [Bacillus thuringiensis Bt407]
Length = 314
Score = 37.7 bits (86), Expect = 0.48, Method: Composition-based stats.
Identities = 20/125 (16%), Positives = 53/125 (42%), Gaps = 6/125 (4%)
Query: 10 VGLITVSVFCFLYAIFYNVINPGDSKSQDNAKVVRADRVIPTANTKRRKELREAIQKIEL 69
+G V F+ AI + I+ + +D + + A++K R+ + + +
Sbjct: 1 MGYAIVVFTVFMLAIIF--ISTKEKMKEDKSVLTM---RKSQASSKLRENALKLKLERMV 55
Query: 70 NHKAKIGNTKSIDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLSSSFFTFLCVSVSS 129
KAK+ +++++ +G ++ + + S + +L L ++S+ C+ +
Sbjct: 56 ETKAKVSTKNTVETMCLQAGYKLTYGEFKLMSFTSAIVLPILVLVMTSNPILA-CLFIMV 114
Query: 130 ALVFP 134
+ P
Sbjct: 115 GYMIP 119
>gi|254496019|ref|ZP_05108922.1| conserved hypothetical protein [Legionella drancourtii LLAP12]
gi|254354768|gb|EET13400.1| conserved hypothetical protein [Legionella drancourtii LLAP12]
Length = 616
Score = 37.3 bits (85), Expect = 0.77, Method: Composition-based stats.
Identities = 16/126 (12%), Positives = 50/126 (39%), Gaps = 6/126 (4%)
Query: 14 TVSVFCFLYAIFYNVINPGDSKSQDNAKVVRADRVIPTANTKRRKELREAIQKIELNHKA 73
+++ ++ I + + + ++Q N ++ + ++ I R K L +A+++ E +
Sbjct: 292 ALTIVLLVFDISVALWDFAEQQTQHNVEMAQYNQDIAALTAAREKLLSDALEEAETEDER 351
Query: 74 KIGNTK------SIDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLSSSFFTFLCVSV 127
K+ K ++ Q + + + I +L+ + ++ F + +
Sbjct: 352 KLAAYKMQMQLDTLKRAQKRCARDWELQKLGLYNNIGYAIGLMLAFIVLTAPFMPVAAAT 411
Query: 128 SSALVF 133
+ L
Sbjct: 412 AVTLGI 417
>gi|87199098|ref|YP_496355.1| type II secretion system protein [Novosphingobium aromaticivorans
DSM 12444]
gi|87134779|gb|ABD25521.1| type II secretion system protein [Novosphingobium aromaticivorans
DSM 12444]
Length = 324
Score = 36.9 bits (84), Expect = 0.94, Method: Composition-based stats.
Identities = 16/138 (11%), Positives = 40/138 (28%), Gaps = 8/138 (5%)
Query: 1 MFDVNSWFLVGLITVSVFCFLYAIFYNVINPGDSKSQDNAKVVRADRVIPTANTKRRKEL 60
M + L+ + YA P SK + R + K +
Sbjct: 1 MTSIIQLLLMSTGLMVAMVLGYAALS---GPSASKEVNRRLQSVRFRHSESTLDKVEAQY 57
Query: 61 REAI---QKIELNHKAKIGNTKSIDSLISCSGLPISKQHY-YIGSCVIGFICGVLSLTLS 116
R+ + + + ++++ + +G + Y Y+ + I ++ +
Sbjct: 58 RKTLAARKPKTMRPAGSSSRLEALELRLHRTGKGWTLSQYLYVSGGLAILIFLLV-YLRT 116
Query: 117 SSFFTFLCVSVSSALVFP 134
+ L + P
Sbjct: 117 GAPLLALGSGIFIGGGLP 134
>gi|85707699|ref|ZP_01038765.1| hypothetical protein NAP1_00650 [Erythrobacter sp. NAP1]
gi|85689233|gb|EAQ29236.1| hypothetical protein NAP1_00650 [Erythrobacter sp. NAP1]
Length = 323
Score = 36.6 bits (83), Expect = 1.1, Method: Composition-based stats.
Identities = 24/127 (18%), Positives = 50/127 (39%), Gaps = 5/127 (3%)
Query: 12 LITVSVFCFLYAIFYNVINPGDSKSQDNAKVVRADRVIPTANTKRRKELREAIQKIELNH 71
LITV +F L A + + P K+Q R + + K + ++AI +
Sbjct: 8 LITVVIFSALVAGYILLTGPAAGKAQKRRLEALRYRHSESTDAKVESQFKKAIAARKPKA 67
Query: 72 KAKIGN---TKSIDSLISCSGLPISKQHY-YIGSCVIGFICGVLSLTLSSSFFTFLCVSV 127
G+ T++++ + +G + Y Y+ +I + +L + + F + +
Sbjct: 68 HKVAGSGSRTEALEVRLDRTGKGWTVSQYLYVTLGIILVVGVLLYIQTGAPFLSLAAGAF 127
Query: 128 SSALVFP 134
L P
Sbjct: 128 V-GLGLP 133
>gi|307293453|ref|ZP_07573299.1| Type II secretion system F domain protein [Sphingobium
chlorophenolicum L-1]
gi|306881519|gb|EFN12735.1| Type II secretion system F domain protein [Sphingobium
chlorophenolicum L-1]
Length = 332
Score = 36.6 bits (83), Expect = 1.2, Method: Composition-based stats.
Identities = 15/107 (14%), Positives = 33/107 (30%), Gaps = 18/107 (16%)
Query: 44 RADRVIPTANTKRRKELREAIQKIELNHKAKIGNTKS----------------IDSLISC 87
+A + R + +AI +E + I N + + I
Sbjct: 30 KARKRRMELIRGRHSDSADAI--LEARMRKAISNRPTGAESTMLVSLVPNPENLAKRIRM 87
Query: 88 SGLPISKQHYYIGSCVIGFICGVLSLTLSSSFFTFLCVSVSSALVFP 134
+G + Y VI + L + + + + +++ L P
Sbjct: 88 TGKKWTVSQYMTSCAVIFLVLCALLMLRGFAPLFAVMLGLAAGLGLP 134
>gi|259419064|ref|ZP_05742981.1| Cl- channel, voltage gated [Silicibacter sp. TrichCH4B]
gi|259345286|gb|EEW57140.1| Cl- channel, voltage gated [Silicibacter sp. TrichCH4B]
Length = 564
Score = 36.2 bits (82), Expect = 1.4, Method: Composition-based stats.
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 5/47 (10%)
Query: 96 HYYI---GSCVIGFICGVLSLTLSSSFFTF--LCVSVSSALVFPRFF 137
+Y+ ++G ICGV+++ L S F L +V SAL PR+
Sbjct: 250 QFYVELPAFLILGLICGVVAVVLMRSIFVTDRLGSAVQSALGVPRWL 296
>gi|115738584|ref|XP_001188871.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
Length = 165
Score = 36.2 bits (82), Expect = 1.4, Method: Composition-based stats.
Identities = 11/60 (18%), Positives = 28/60 (46%)
Query: 14 TVSVFCFLYAIFYNVINPGDSKSQDNAKVVRADRVIPTANTKRRKELREAIQKIELNHKA 73
++S + A+ I+ +++ K+ D V + +RRK++ E ++I+ +
Sbjct: 71 SISASGKVRAVNEKTISLHGRTTRELRKITHIDNVAAAESEERRKQIEERNKEIKERQRQ 130
>gi|257791502|ref|YP_003182108.1| type II secretion system protein [Eggerthella lenta DSM 2243]
gi|257475399|gb|ACV55719.1| type II secretion system protein [Eggerthella lenta DSM 2243]
Length = 295
Score = 36.2 bits (82), Expect = 1.6, Method: Composition-based stats.
Identities = 25/139 (17%), Positives = 52/139 (37%), Gaps = 16/139 (11%)
Query: 7 WFLVGLITVSVFCFLYAIFYNVINPGDSKSQDNAKVVRADRVIPTANTKRRKELREAIQK 66
+ LI S +Y +F + + P K + D + + R +
Sbjct: 3 MMVALLIGCSAGFAVYLLFASRLFPSYRKIEKP-----PDSSVDANVSDRMAAAASFVSN 57
Query: 67 IELNHKAKIGNTKSIDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLS--------SS 118
+ +A+ N + + I+ +GL + +Y S ++ + + L S +S
Sbjct: 58 MLPLSRAQERN---LRNQIAAAGLNMKPSTFYGLSVILSLLGMIALLVFSPYIVGSDTTS 114
Query: 119 FFTFLCVSVSSALVFPRFF 137
F V V++ ++ PR F
Sbjct: 115 LLLFNAVVVAAGILGPRGF 133
>gi|327272794|ref|XP_003221169.1| PREDICTED: thyroid transcription factor 1-associated protein
26-like [Anolis carolinensis]
Length = 206
Score = 36.2 bits (82), Expect = 1.6, Method: Composition-based stats.
Identities = 14/68 (20%), Positives = 31/68 (45%)
Query: 28 VINPGDSKSQDNAKVVRADRVIPTANTKRRKELREAIQKIELNHKAKIGNTKSIDSLISC 87
I + K++++ + ++A+R ++RKE RE Q++ K ++ S +
Sbjct: 129 KIKTANQKAKEDYEKIKAERDRKKEAARQRKEEREKAQELYKKKKMEVYKILSKRTKKGQ 188
Query: 88 SGLPISKQ 95
L I +
Sbjct: 189 PNLNIQME 196
>gi|195118443|ref|XP_002003746.1| GI21363 [Drosophila mojavensis]
gi|193914321|gb|EDW13188.1| GI21363 [Drosophila mojavensis]
Length = 7182
Score = 36.2 bits (82), Expect = 1.7, Method: Composition-based stats.
Identities = 15/61 (24%), Positives = 29/61 (47%)
Query: 22 YAIFYNVINPGDSKSQDNAKVVRADRVIPTANTKRRKELREAIQKIELNHKAKIGNTKSI 81
YA + + +S++++ A V++A+ +K RK L + K KAKI + +
Sbjct: 6482 YAQLESALRNLNSENRNLAGVLKAELDRALEASKARKALENDLDKARQWLKAKISEVRKL 6541
Query: 82 D 82
Sbjct: 6542 P 6542
>gi|16905460|gb|AAL31361.1|L38852_1 signal peptidase 12kDa subunit [Homo sapiens]
Length = 102
Score = 36.2 bits (82), Expect = 1.7, Method: Composition-based stats.
Identities = 12/61 (19%), Positives = 28/61 (45%), Gaps = 4/61 (6%)
Query: 80 SIDSLISCSGLPISKQHY---YIGSCVIGFICGVLSLTLSSS-FFTFLCVSVSSALVFPR 135
S+ + + G +++Q + Y+ S ++GFI G ++ + + + S L P
Sbjct: 7 SLPTQMDYKGQKLAEQMFQGIYLFSAIVGFIYGYVAEQFGWTVYIVMAGFAFSCLLTLPP 66
Query: 136 F 136
+
Sbjct: 67 W 67
>gi|145522792|ref|XP_001447240.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124414740|emb|CAK79843.1| unnamed protein product [Paramecium tetraurelia]
Length = 644
Score = 36.2 bits (82), Expect = 1.7, Method: Composition-based stats.
Identities = 7/54 (12%), Positives = 24/54 (44%)
Query: 31 PGDSKSQDNAKVVRADRVIPTANTKRRKELREAIQKIELNHKAKIGNTKSIDSL 84
+ + + +A++ +R+K ++AI++ + KA+ ++ +
Sbjct: 402 EKQERQKAEKERQKAEQDAIKEKQERQKAEQDAIKEKQERQKAEEERQRTEEKR 455
>gi|156355975|ref|XP_001623708.1| predicted protein [Nematostella vectensis]
gi|156210433|gb|EDO31608.1| predicted protein [Nematostella vectensis]
Length = 581
Score = 35.8 bits (81), Expect = 1.8, Method: Composition-based stats.
Identities = 7/65 (10%), Positives = 24/65 (36%)
Query: 24 IFYNVINPGDSKSQDNAKVVRADRVIPTANTKRRKELREAIQKIELNHKAKIGNTKSIDS 83
+ + +++ ++ +R I K RK + + + +E + + T+ +
Sbjct: 341 LLEEKLKQSEAEKEEMRAAQEEERRIKEELEKERKLIEQNRELLEKRVQEQEAETQRLQE 400
Query: 84 LISCS 88
+
Sbjct: 401 EFERA 405
>gi|309358110|emb|CAS00285.1| hypothetical protein CBG_25923 [Caenorhabditis briggsae AF16]
Length = 218
Score = 35.8 bits (81), Expect = 1.8, Method: Composition-based stats.
Identities = 16/73 (21%), Positives = 28/73 (38%), Gaps = 2/73 (2%)
Query: 5 NSWFLVG--LITVSVFCFLYAIFYNVINPGDSKSQDNAKVVRADRVIPTANTKRRKELRE 62
N ++G ++ +S CF+ A + + K K R K+RK
Sbjct: 117 NPGIIIGGAVLLLSALCFMAACAMSFLTAKSQKPAVPVKRGNQIRKPARHVHKKRKRASS 176
Query: 63 AIQKIELNHKAKI 75
++ K+E K K
Sbjct: 177 SMDKMEKGQKKKE 189
>gi|148557758|ref|YP_001265340.1| type II secretion system protein [Sphingomonas wittichii RW1]
gi|148502948|gb|ABQ71202.1| type II secretion system protein [Sphingomonas wittichii RW1]
Length = 324
Score = 35.8 bits (81), Expect = 1.8, Method: Composition-based stats.
Identities = 12/52 (23%), Positives = 22/52 (42%)
Query: 84 LISCSGLPISKQHYYIGSCVIGFICGVLSLTLSSSFFTFLCVSVSSALVFPR 135
I +G + + YY GS + +L + + + L V ++ L PR
Sbjct: 84 QIEAAGKKWTVRQYYTGSGFAFAVPMLLLMLVGLPAWMALIVGAAAGLGLPR 135
>gi|158285756|ref|XP_308445.4| AGAP007387-PA [Anopheles gambiae str. PEST]
gi|157020146|gb|EAA04266.4| AGAP007387-PA [Anopheles gambiae str. PEST]
Length = 449
Score = 35.8 bits (81), Expect = 1.8, Method: Composition-based stats.
Identities = 9/53 (16%), Positives = 23/53 (43%)
Query: 36 SQDNAKVVRADRVIPTANTKRRKELREAIQKIELNHKAKIGNTKSIDSLISCS 88
+ + ++ + + ++L ++KIE K + T+ + LIS +
Sbjct: 216 ERRRKEQLKKLFDRTSKQVEEEQQLLNELKKIEARKKERERKTQDLQKLISQA 268
>gi|292491526|ref|YP_003526965.1| type II secretion system protein [Nitrosococcus halophilus Nc4]
gi|291580121|gb|ADE14578.1| type II secretion system protein [Nitrosococcus halophilus Nc4]
Length = 323
Score = 35.8 bits (81), Expect = 1.9, Method: Composition-based stats.
Identities = 19/129 (14%), Positives = 48/129 (37%), Gaps = 3/129 (2%)
Query: 5 NSWFLVGLITVSVFCFLYAIFYNVINPGDSKSQDNAKVVRA--DRVIPTANTKRRKELRE 62
+ + ++ ++VF AI +++ + ++ + + P A + R++
Sbjct: 4 DQLIFLIMVFLAVFLLATAIIVPTFGTSAQAAKNLRRRIQGAIEELDPAAISLLREKSFH 63
Query: 63 AIQKIELNHKAKIGNTKSIDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLSSSFFTF 122
+ +E + + LI SG + + + +G G+L L+ S
Sbjct: 64 KLSPLE-RWIEGLPGMVRLSLLIKQSGRETAAYRVVLFAFSLGMGLGLLVWVLARSPLLG 122
Query: 123 LCVSVSSAL 131
V+ S +
Sbjct: 123 FLVAFVSFI 131
>gi|258516254|ref|YP_003192476.1| phosphodiesterase [Desulfotomaculum acetoxidans DSM 771]
gi|257779959|gb|ACV63853.1| RNA binding metal dependent phosphohydrolase [Desulfotomaculum
acetoxidans DSM 771]
Length = 511
Score = 35.8 bits (81), Expect = 1.9, Method: Composition-based stats.
Identities = 11/90 (12%), Positives = 33/90 (36%), Gaps = 6/90 (6%)
Query: 4 VNSWFLVGLITVSVFCFLYAIFYNVINPGDSKSQDNAKVVRADRVIPTANTKR------R 57
+ + V F Y I V+ + +++ K + + + KR +
Sbjct: 2 FENLLIALPAAVVAFIIGYFIRRYVVEAKIATAEEEVKRIIDNAEKTAESLKREAILEAK 61
Query: 58 KELREAIQKIELNHKAKIGNTKSIDSLISC 87
+E+ + ++E +K + + ++ +
Sbjct: 62 EEVLKQRNEVERENKERRSELQRLERRLVQ 91
>gi|118091433|ref|XP_421068.2| PREDICTED: similar to class I INCENP protein [Gallus gallus]
Length = 495
Score = 35.8 bits (81), Expect = 1.9, Method: Composition-based stats.
Identities = 14/73 (19%), Positives = 27/73 (36%), Gaps = 1/73 (1%)
Query: 25 FYNVINPGDSKSQDNAKVVRADRVIPTAN-TKRRKELREAIQKIELNHKAKIGNTKSIDS 83
++ +++ Q KV R KR + LR+A+Q E + + K ++
Sbjct: 169 LESLRKKQEAEEQRKKKVEEEKRRRQAEMKQKREERLRKALQARERVEQMEEEKKKRMEQ 228
Query: 84 LISCSGLPISKQH 96
I S +
Sbjct: 229 KILQSDEKVRLSQ 241
>gi|85076201|ref|XP_955894.1| hypothetical protein NCU03330 [Neurospora crassa OR74A]
gi|28881167|emb|CAD70349.1| conserved hypothetical protein [Neurospora crassa]
gi|28916922|gb|EAA26658.1| conserved hypothetical protein [Neurospora crassa OR74A]
Length = 1137
Score = 35.8 bits (81), Expect = 1.9, Method: Composition-based stats.
Identities = 12/52 (23%), Positives = 24/52 (46%)
Query: 33 DSKSQDNAKVVRADRVIPTANTKRRKELREAIQKIELNHKAKIGNTKSIDSL 84
D AK V +R + A KRR+E+++ I+++ K + ++
Sbjct: 1051 DEVEARRAKAVDLEREMSLAREKRREEMQQQIKRLAEAQAPKTAGSPAVADR 1102
>gi|295704070|ref|YP_003597145.1| putative ABC transporter ATP-binding protein [Bacillus megaterium
DSM 319]
gi|294801729|gb|ADF38795.1| putative ABC transporter, ATP-binding protein [Bacillus megaterium
DSM 319]
Length = 632
Score = 35.8 bits (81), Expect = 1.9, Method: Composition-based stats.
Identities = 20/92 (21%), Positives = 30/92 (32%), Gaps = 2/92 (2%)
Query: 7 WFLVGLITVSVFCFLYAIFYNVINPGDSKSQDNAKVVRADRVIPTANTKRRKEL--REAI 64
G +S++ Y AKV P KRR ++
Sbjct: 508 LVFEGEGNISIYFGAYTDQLEEAMKKKQAMVQQAKVKEEKPKQPEKTKKRRLTYKEQKEW 567
Query: 65 QKIELNHKAKIGNTKSIDSLISCSGLPISKQH 96
++IE N AK + + S I G +K H
Sbjct: 568 EEIEGNIAAKEEEIERLTSEIEQVGSDYTKAH 599
>gi|195385902|ref|XP_002051643.1| GJ11158 [Drosophila virilis]
gi|194148100|gb|EDW63798.1| GJ11158 [Drosophila virilis]
Length = 8387
Score = 35.8 bits (81), Expect = 2.3, Method: Composition-based stats.
Identities = 14/61 (22%), Positives = 29/61 (47%)
Query: 22 YAIFYNVINPGDSKSQDNAKVVRADRVIPTANTKRRKELREAIQKIELNHKAKIGNTKSI 81
YA + + +S++++ + V++A+ +K RK L + K KAKI + +
Sbjct: 7004 YAQLESALRNLNSENRNLSGVLKAELDRALEASKARKALENDLDKARQWLKAKISEVRKL 7063
Query: 82 D 82
Sbjct: 7064 P 7064
>gi|221128363|ref|XP_002164116.1| PREDICTED: similar to coiled-coil domain containing 25, partial
[Hydra magnipapillata]
Length = 158
Score = 35.4 bits (80), Expect = 2.3, Method: Composition-based stats.
Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Query: 25 FYNVINPGDSKSQDNAKVVRADRVIPTANTKRRKELRE-AIQKIELNHKAKIGNTKSIDS 83
N +N + + N +++R DR +R K+L E A+ K++ K + N S S
Sbjct: 78 IINRLNKTKVEREINYRLLREDRDREERAKERAKQLEEKALNKLKEEQKREQENLTSYAS 137
Query: 84 LISCSGL 90
L+ S +
Sbjct: 138 LMDESNM 144
>gi|194760671|ref|XP_001962561.1| GF14378 [Drosophila ananassae]
gi|190616258|gb|EDV31782.1| GF14378 [Drosophila ananassae]
Length = 8003
Score = 35.4 bits (80), Expect = 2.3, Method: Composition-based stats.
Identities = 12/61 (19%), Positives = 28/61 (45%)
Query: 22 YAIFYNVINPGDSKSQDNAKVVRADRVIPTANTKRRKELREAIQKIELNHKAKIGNTKSI 81
YA + + ++++++ + V++A+ +K RK L + K K KI + +
Sbjct: 6620 YAQLESALRNLNTENRNLSGVLKAELDRALEASKARKSLENDLDKARQWLKTKISEVRKL 6679
Query: 82 D 82
Sbjct: 6680 P 6680
>gi|326426627|gb|EGD72197.1| hypothetical protein PTSG_00219 [Salpingoeca sp. ATCC 50818]
Length = 2117
Score = 35.4 bits (80), Expect = 2.4, Method: Composition-based stats.
Identities = 11/63 (17%), Positives = 25/63 (39%)
Query: 25 FYNVINPGDSKSQDNAKVVRADRVIPTANTKRRKELREAIQKIELNHKAKIGNTKSIDSL 84
+ + + + + A+ P +RRK RE ++ + + K +SI +
Sbjct: 509 LRKRRQQAEREHKAEKQRLLAEGQNPEEVFRRRKLERERAKQQQRAQREKEKQEQSIAAR 568
Query: 85 ISC 87
I+
Sbjct: 569 IAQ 571
>gi|322785793|gb|EFZ12413.1| hypothetical protein SINV_12697 [Solenopsis invicta]
Length = 313
Score = 35.4 bits (80), Expect = 2.5, Method: Composition-based stats.
Identities = 12/52 (23%), Positives = 23/52 (44%), Gaps = 3/52 (5%)
Query: 27 NVINPGDSKSQDNAKVVRADRVIPTANTKRRK---ELREAIQKIELNHKAKI 75
S S++ KV++ +R + TK RK +L++ + + KI
Sbjct: 200 KKRGRSKSDSKERKKVIKTERRVIVDITKDRKVREQLKDKRRDFDRKRDEKI 251
>gi|156406663|ref|XP_001641164.1| predicted protein [Nematostella vectensis]
gi|156228302|gb|EDO49101.1| predicted protein [Nematostella vectensis]
Length = 1107
Score = 35.4 bits (80), Expect = 2.5, Method: Composition-based stats.
Identities = 14/115 (12%), Positives = 34/115 (29%), Gaps = 7/115 (6%)
Query: 15 VSVFCFLYAIFYNVINPGDSKSQDNAKVVRADRVIPTA-NTKRRKELREAIQKIELN--- 70
VS + + ++ + K++KE + + +++ +
Sbjct: 889 VSQANIRIGLLEKRLENASKEADARVEAANKKMEQAMEELQKKKKEYEDTMDELQADIDT 948
Query: 71 -HKAKIGNTKSIDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLSSSFFTFLC 124
K K K +D+ + L +H S + + G + S
Sbjct: 949 LEKEKEDMKKRLDAYSKRTLLADLARHTSASSGIAAVVAG--NPLKGGSPLRAAG 1001
>gi|160935091|ref|ZP_02082477.1| hypothetical protein CLOLEP_03967 [Clostridium leptum DSM 753]
gi|156866544|gb|EDO59916.1| hypothetical protein CLOLEP_03967 [Clostridium leptum DSM 753]
Length = 521
Score = 35.4 bits (80), Expect = 2.6, Method: Composition-based stats.
Identities = 16/78 (20%), Positives = 33/78 (42%), Gaps = 6/78 (7%)
Query: 34 SKSQDNAKVVRADRVIPTANTKRR-----KELREAIQKIELNHKAKIGNTKSIDSLISCS 88
+ + A+ ADR +RR + L + ++ +E +A TK ID ++ +
Sbjct: 75 HRQRLEAEREIADRRKDVQRQERRIQQKEETLDKKLEHLEAKEEAINAKTKKIDERLAEA 134
Query: 89 GLPISKQHYYIGSCVIGF 106
+ K + + + GF
Sbjct: 135 E-TVKKSQFEMLERISGF 151
>gi|195034088|ref|XP_001988823.1| GH10367 [Drosophila grimshawi]
gi|193904823|gb|EDW03690.1| GH10367 [Drosophila grimshawi]
Length = 8390
Score = 35.4 bits (80), Expect = 2.6, Method: Composition-based stats.
Identities = 13/61 (21%), Positives = 28/61 (45%)
Query: 22 YAIFYNVINPGDSKSQDNAKVVRADRVIPTANTKRRKELREAIQKIELNHKAKIGNTKSI 81
YA + + +S++++ + V++A+ +K RK L + K K KI + +
Sbjct: 7007 YAQLESALRNLNSENRNLSGVLKAELDRALEASKARKALENDLDKARQWLKTKISEVRKL 7066
Query: 82 D 82
Sbjct: 7067 P 7067
>gi|260827853|ref|XP_002608878.1| hypothetical protein BRAFLDRAFT_129938 [Branchiostoma floridae]
gi|229294232|gb|EEN64888.1| hypothetical protein BRAFLDRAFT_129938 [Branchiostoma floridae]
Length = 612
Score = 35.4 bits (80), Expect = 2.8, Method: Composition-based stats.
Identities = 13/76 (17%), Positives = 29/76 (38%), Gaps = 13/76 (17%)
Query: 25 FYNVINPGDSKSQDNAKVVRADRVIP-------------TANTKRRKELREAIQKIELNH 71
Y + SK ++ +V +R+ +RRKEL ++ ++
Sbjct: 197 LYEEMEVQLSKEREKIRVEVEERMRVELARKLEEKDDQLRELNQRRKELELMLKDLDHRE 256
Query: 72 KAKIGNTKSIDSLISC 87
K K + ++ +I+
Sbjct: 257 KEKDKRYQELEEMIAE 272
>gi|126336629|ref|XP_001380278.1| PREDICTED: similar to signal peptidase complex subunit 1 homolog
(S. cerevisiae) [Monodelphis domestica]
Length = 573
Score = 35.0 bits (79), Expect = 3.8, Method: Composition-based stats.
Identities = 19/102 (18%), Positives = 43/102 (42%), Gaps = 7/102 (6%)
Query: 39 NAKVVRADRVIPTANTKRRKELREAIQKIELNHKAKIGNTKSIDSLISCSGLPISKQHY- 97
+ +V + R P+ + KR + ++Q+ + S+ + + G +++Q +
Sbjct: 440 PSSLVSSSRD-PSGSPKRSTSV--SLQRRGPPKAIILDGLSSLPTQMDYKGQKLAEQMFQ 496
Query: 98 --YIGSCVIGFICGVLSLTLSSS-FFTFLCVSVSSALVFPRF 136
+ S VIGFI G ++ + + + S L P +
Sbjct: 497 GIILFSAVIGFIYGYVAEQFGWTVYIVMAGFAFSCLLTLPPW 538
>gi|295700366|ref|YP_003608259.1| type II secretion system F domain protein [Burkholderia sp.
CCGE1002]
gi|295439579|gb|ADG18748.1| Type II secretion system F domain protein [Burkholderia sp.
CCGE1002]
Length = 325
Score = 35.0 bits (79), Expect = 3.9, Method: Composition-based stats.
Identities = 17/121 (14%), Positives = 37/121 (30%)
Query: 6 SWFLVGLITVSVFCFLYAIFYNVINPGDSKSQDNAKVVRADRVIPTANTKRRKELREAIQ 65
S L+ V +Y + + P + + V A + K A
Sbjct: 8 SIILLFAAVVLATGGVYEYWNSRHGPVARRVDSRIRAVSAGGPMSRQRLSILKTRTMAES 67
Query: 66 KIELNHKAKIGNTKSIDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLSSSFFTFLCV 125
+ +I ++D + SGL S ++ V+ ++ +L +
Sbjct: 68 AVLARLLLRIPRVHALDLFLQQSGLSWSVGRFFGTCAVLPPFVLIVGASLRVPWVFTAGA 127
Query: 126 S 126
+
Sbjct: 128 A 128
>gi|198434770|ref|XP_002132158.1| PREDICTED: similar to melanoma inhibitory activity family, member 3
[Ciona intestinalis]
Length = 1608
Score = 34.6 bits (78), Expect = 4.0, Method: Composition-based stats.
Identities = 9/62 (14%), Positives = 23/62 (37%)
Query: 27 NVINPGDSKSQDNAKVVRADRVIPTANTKRRKELREAIQKIELNHKAKIGNTKSIDSLIS 86
+ ++QD K + K+RK + E ++ + K + + ++ +
Sbjct: 976 KSLEQKQKETQDAEKKAAQLKSEMKDLVKQRKMVEENLKDSQDRLKREEKKKQELEQNLQ 1035
Query: 87 CS 88
S
Sbjct: 1036 TS 1037
>gi|300692335|ref|YP_003753330.1| Tad secretion system, pilus assembly protein [Ralstonia
solanacearum PSI07]
gi|299079395|emb|CBJ52066.1| Tad secretion system, pilus assembly protein [Ralstonia
solanacearum PSI07]
Length = 325
Score = 34.6 bits (78), Expect = 4.0, Method: Composition-based stats.
Identities = 16/123 (13%), Positives = 43/123 (34%), Gaps = 7/123 (5%)
Query: 12 LITVSVFCFLYAIFYNVINPGDSKSQDNAKVVR----ADRVIPTANTKRRKELREAIQKI 67
I V + + +++N + +K + + + + T+ K+R L E+
Sbjct: 13 FIAVVLGAIGFYLWWNSRHSPTAKRLNQRLEMALFSLSGKDAQTSILKQR-VLAESTDIA 71
Query: 68 ELNHKAKIGNTKSIDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLSSSFFTFLCVSV 127
L + N + + SGL S + + + + ++ + L ++
Sbjct: 72 RLLQRIPHVNALDMT--LLQSGLDWSVSRFLTLTLALPVVACTVAALFAPPLVLLLGIAA 129
Query: 128 SSA 130
+
Sbjct: 130 LAG 132
>gi|254496627|ref|ZP_05109492.1| hypothetical protein LDG_1061 [Legionella drancourtii LLAP12]
gi|254354149|gb|EET12819.1| hypothetical protein LDG_1061 [Legionella drancourtii LLAP12]
Length = 433
Score = 34.6 bits (78), Expect = 4.2, Method: Composition-based stats.
Identities = 14/72 (19%), Positives = 26/72 (36%)
Query: 23 AIFYNVINPGDSKSQDNAKVVRADRVIPTANTKRRKELREAIQKIELNHKAKIGNTKSID 82
+ ++Q + A R +RRKE EA ++ E + + D
Sbjct: 234 FVIEFDKTKEQEEAQRRKEQEEAQRRKEQEEAQRRKEQEEAQRRKEQEDSLQRRKVQEED 293
Query: 83 SLISCSGLPISK 94
+ + GL +K
Sbjct: 294 ARRAQIGLMFAK 305
>gi|326920284|ref|XP_003206404.1| PREDICTED: inner centromere protein A-like [Meleagris gallopavo]
Length = 634
Score = 34.6 bits (78), Expect = 4.2, Method: Composition-based stats.
Identities = 13/73 (17%), Positives = 26/73 (35%), Gaps = 1/73 (1%)
Query: 25 FYNVINPGDSKSQDNAKVVRADRVIPTAN-TKRRKELREAIQKIELNHKAKIGNTKSIDS 83
++ +++ Q KV R KR + LR+A+Q E + + K ++
Sbjct: 149 LESLRKKQEAEEQRKKKVEEEKRRRQAEMKQKREERLRKALQARERVEQMEEEKKKRMEQ 208
Query: 84 LISCSGLPISKQH 96
S +
Sbjct: 209 KFLQSDEKVRLSQ 221
>gi|302391032|ref|YP_003826852.1| type II secretion system F domain protein [Acetohalobium arabaticum
DSM 5501]
gi|302203109|gb|ADL11787.1| Type II secretion system F domain protein [Acetohalobium arabaticum
DSM 5501]
Length = 327
Score = 34.6 bits (78), Expect = 4.5, Method: Composition-based stats.
Identities = 17/111 (15%), Positives = 43/111 (38%), Gaps = 1/111 (0%)
Query: 7 WFLVGLITVSVFCFLYAIFYNVINPGDS-KSQDNAKVVRADRVIPTANTKRRKELREAIQ 65
+ +V V + L A V D + + ++ + + + RK L++ +
Sbjct: 10 FLVVTTAVVVSYKLLTAREAKVKERLDKYSAIEEGRIGQNTALDREEDVGERKSLKKRLL 69
Query: 66 KIELNHKAKIGNTKSIDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLS 116
+ S+++ + + LP+ + I + V I G++ + +S
Sbjct: 70 EKFNQFLTSFSLVASLEAELQKTDLPLKVSEFIIINLVSCVILGLIGILVS 120
>gi|71278760|ref|YP_268468.1| putative tolA protein [Colwellia psychrerythraea 34H]
gi|71144500|gb|AAZ24973.1| putative tolA protein [Colwellia psychrerythraea 34H]
Length = 304
Score = 34.6 bits (78), Expect = 4.5, Method: Composition-based stats.
Identities = 13/58 (22%), Positives = 22/58 (37%), Gaps = 1/58 (1%)
Query: 22 YAIFYNVINPGDSKSQD-NAKVVRADRVIPTANTKRRKELREAIQKIELNHKAKIGNT 78
+ N I +D K ++A + KRR + + I+K+E K K
Sbjct: 56 FEQAVNKIKRQKINERDAEKKRLKAVEKRASDAKKRRVQEQARIKKLEKQRKQKEQEK 113
>gi|238922904|ref|YP_002936417.1| hypothetical protein EUBREC_0492 [Eubacterium rectale ATCC 33656]
gi|238874576|gb|ACR74283.1| Hypothetical protein EUBREC_0492 [Eubacterium rectale ATCC 33656]
Length = 616
Score = 34.6 bits (78), Expect = 4.6, Method: Composition-based stats.
Identities = 14/62 (22%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Query: 21 LYAIFYNVINPGDSKSQDNAKVVRADRVIPTANTKRRKELREAIQKIELNHKAKIGNTKS 80
+Y + ++ + + + +R A +RRK+L+E ++ EL + I +KS
Sbjct: 44 IYGKEQPYLQWTENGKSKSKYIKKNEREEIFAGVERRKQLQEELK--ELKQHSSIDPSKS 101
Query: 81 ID 82
D
Sbjct: 102 TD 103
>gi|291528741|emb|CBK94327.1| hypothetical protein ERE_24690 [Eubacterium rectale M104/1]
Length = 599
Score = 34.6 bits (78), Expect = 4.6, Method: Composition-based stats.
Identities = 14/62 (22%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Query: 21 LYAIFYNVINPGDSKSQDNAKVVRADRVIPTANTKRRKELREAIQKIELNHKAKIGNTKS 80
+Y + ++ + + + +R A +RRK+L+E ++ EL + I +KS
Sbjct: 27 IYGKEQPYLQWTENGKSKSKYIKKNEREEIFAGVERRKQLQEELK--ELKQHSSIDPSKS 84
Query: 81 ID 82
D
Sbjct: 85 TD 86
>gi|291523794|emb|CBK89381.1| hypothetical protein EUR_01370 [Eubacterium rectale DSM 17629]
Length = 599
Score = 34.6 bits (78), Expect = 4.7, Method: Composition-based stats.
Identities = 14/62 (22%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Query: 21 LYAIFYNVINPGDSKSQDNAKVVRADRVIPTANTKRRKELREAIQKIELNHKAKIGNTKS 80
+Y + ++ + + + +R A +RRK+L+E ++ EL + I +KS
Sbjct: 27 IYGKEQPYLQWTENGKSKSKYIKKNEREEIFAGVERRKQLQEELK--ELKQHSSIDPSKS 84
Query: 81 ID 82
D
Sbjct: 85 TD 86
>gi|123414924|ref|XP_001304583.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121886046|gb|EAX91653.1| hypothetical protein TVAG_323680 [Trichomonas vaginalis G3]
Length = 813
Score = 34.6 bits (78), Expect = 4.7, Method: Composition-based stats.
Identities = 9/59 (15%), Positives = 19/59 (32%)
Query: 26 YNVINPGDSKSQDNAKVVRADRVIPTANTKRRKELREAIQKIELNHKAKIGNTKSIDSL 84
+ +RA+R KR + ++E I+K E + + +
Sbjct: 480 EKALQEKIDMENKRFLALRAERRRLAEKQKRERIVQEQIKKQEEFERRRQETAAKLRKQ 538
>gi|254780721|ref|YP_003065134.1| pilus component protein [Candidatus Liberibacter asiaticus str.
psy62]
gi|254040398|gb|ACT57194.1| pilus component protein [Candidatus Liberibacter asiaticus str.
psy62]
Length = 329
Score = 34.6 bits (78), Expect = 4.8, Method: Composition-based stats.
Identities = 19/91 (20%), Positives = 39/91 (42%), Gaps = 8/91 (8%)
Query: 1 MFDVNSWFLVGLITVSVFCFLYAIFYNVINPGDSKSQDNAKVVRADRVIPTANTKRRKEL 60
+FD + VS+F +YA+ + G+ + K V +R I RK+
Sbjct: 8 LFDATELAVAITTAVSIFSLIYAVVIPSLGSGE--LEKRMKSVAVEREIL------RKQQ 59
Query: 61 REAIQKIELNHKAKIGNTKSIDSLISCSGLP 91
++QK + + + ++KS+ + + L
Sbjct: 60 ITSLQKDSASSRLRTRDSKSLRNFVKKLNLK 90
>gi|320544548|ref|NP_001188697.1| Muscle-specific protein 300, isoform I [Drosophila melanogaster]
gi|318068312|gb|ADV36947.1| Muscle-specific protein 300, isoform I [Drosophila melanogaster]
Length = 11999
Score = 34.6 bits (78), Expect = 5.0, Method: Composition-based stats.
Identities = 11/61 (18%), Positives = 28/61 (45%)
Query: 22 YAIFYNVINPGDSKSQDNAKVVRADRVIPTANTKRRKELREAIQKIELNHKAKIGNTKSI 81
Y+ + + ++++++ + V++A+ +K RK L + K K KI + +
Sbjct: 6640 YSQLESALRNLNTENRNLSGVLKAELDRALEASKARKSLENDLDKARQWLKTKISEVRKL 6699
Query: 82 D 82
Sbjct: 6700 P 6700
>gi|320544546|ref|NP_001188696.1| Muscle-specific protein 300, isoform H [Drosophila melanogaster]
gi|318068311|gb|ADV36946.1| Muscle-specific protein 300, isoform H [Drosophila melanogaster]
Length = 11986
Score = 34.6 bits (78), Expect = 5.0, Method: Composition-based stats.
Identities = 11/61 (18%), Positives = 28/61 (45%)
Query: 22 YAIFYNVINPGDSKSQDNAKVVRADRVIPTANTKRRKELREAIQKIELNHKAKIGNTKSI 81
Y+ + + ++++++ + V++A+ +K RK L + K K KI + +
Sbjct: 6640 YSQLESALRNLNTENRNLSGVLKAELDRALEASKARKSLENDLDKARQWLKTKISEVRKL 6699
Query: 82 D 82
Sbjct: 6700 P 6700
>gi|195576698|ref|XP_002078212.1| GD23326 [Drosophila simulans]
gi|194190221|gb|EDX03797.1| GD23326 [Drosophila simulans]
Length = 2547
Score = 34.6 bits (78), Expect = 5.0, Method: Composition-based stats.
Identities = 11/61 (18%), Positives = 28/61 (45%)
Query: 22 YAIFYNVINPGDSKSQDNAKVVRADRVIPTANTKRRKELREAIQKIELNHKAKIGNTKSI 81
Y+ + + ++++++ + V++A+ +K RK L + K K KI + +
Sbjct: 469 YSQLESALRNLNTENRNLSGVLKAELDRALEASKARKSLENDLDKARQWLKTKISEVRKL 528
Query: 82 D 82
Sbjct: 529 P 529
>gi|195342674|ref|XP_002037925.1| GM18531 [Drosophila sechellia]
gi|194132775|gb|EDW54343.1| GM18531 [Drosophila sechellia]
Length = 8290
Score = 34.6 bits (78), Expect = 5.0, Method: Composition-based stats.
Identities = 11/61 (18%), Positives = 28/61 (45%)
Query: 22 YAIFYNVINPGDSKSQDNAKVVRADRVIPTANTKRRKELREAIQKIELNHKAKIGNTKSI 81
Y+ + + ++++++ + V++A+ +K RK L + K K KI + +
Sbjct: 6907 YSQLESALRNLNTENRNLSGVLKAELDRALEASKARKSLENDLDKARQWLKTKISEVRKL 6966
Query: 82 D 82
Sbjct: 6967 P 6967
>gi|320544542|ref|NP_001188694.1| Muscle-specific protein 300, isoform D [Drosophila melanogaster]
gi|318068309|gb|ADV36944.1| Muscle-specific protein 300, isoform D [Drosophila melanogaster]
Length = 12345
Score = 34.6 bits (78), Expect = 5.0, Method: Composition-based stats.
Identities = 11/61 (18%), Positives = 28/61 (45%)
Query: 22 YAIFYNVINPGDSKSQDNAKVVRADRVIPTANTKRRKELREAIQKIELNHKAKIGNTKSI 81
Y+ + + ++++++ + V++A+ +K RK L + K K KI + +
Sbjct: 6999 YSQLESALRNLNTENRNLSGVLKAELDRALEASKARKSLENDLDKARQWLKTKISEVRKL 7058
Query: 82 D 82
Sbjct: 7059 P 7059
>gi|320544538|ref|NP_001188692.1| Muscle-specific protein 300, isoform B [Drosophila melanogaster]
gi|318068307|gb|ADV36942.1| Muscle-specific protein 300, isoform B [Drosophila melanogaster]
Length = 8382
Score = 34.6 bits (78), Expect = 5.0, Method: Composition-based stats.
Identities = 11/61 (18%), Positives = 28/61 (45%)
Query: 22 YAIFYNVINPGDSKSQDNAKVVRADRVIPTANTKRRKELREAIQKIELNHKAKIGNTKSI 81
Y+ + + ++++++ + V++A+ +K RK L + K K KI + +
Sbjct: 6999 YSQLESALRNLNTENRNLSGVLKAELDRALEASKARKSLENDLDKARQWLKTKISEVRKL 7058
Query: 82 D 82
Sbjct: 7059 P 7059
>gi|194856553|ref|XP_001968775.1| GG25055 [Drosophila erecta]
gi|190660642|gb|EDV57834.1| GG25055 [Drosophila erecta]
Length = 8391
Score = 34.3 bits (77), Expect = 5.2, Method: Composition-based stats.
Identities = 11/61 (18%), Positives = 27/61 (44%)
Query: 22 YAIFYNVINPGDSKSQDNAKVVRADRVIPTANTKRRKELREAIQKIELNHKAKIGNTKSI 81
Y+ + + ++ +++ + V++A+ +K RK L + K K KI + +
Sbjct: 7008 YSQLESALRNLNTDNRNLSAVLKAELDRALEASKARKSLENDLDKARQWLKTKISEVRKL 7067
Query: 82 D 82
Sbjct: 7068 P 7068
>gi|325114110|emb|CBZ49668.1| hypothetical protein NCLIV_001560 [Neospora caninum Liverpool]
Length = 1126
Score = 34.3 bits (77), Expect = 5.4, Method: Composition-based stats.
Identities = 10/69 (14%), Positives = 24/69 (34%)
Query: 29 INPGDSKSQDNAKVVRADRVIPTANTKRRKELREAIQKIELNHKAKIGNTKSIDSLISCS 88
+ K + A A R + RK + ++KI + + + + L+
Sbjct: 309 LRGEREKERKPATRTPAGRSAASDAPPSRKRSAQEVKKITESAEERQRKETEDELLVPQL 368
Query: 89 GLPISKQHY 97
G+ + +
Sbjct: 369 GVSPGDRRF 377
>gi|312371680|gb|EFR19804.1| hypothetical protein AND_21783 [Anopheles darlingi]
Length = 557
Score = 34.3 bits (77), Expect = 5.4, Method: Composition-based stats.
Identities = 10/53 (18%), Positives = 22/53 (41%)
Query: 36 SQDNAKVVRADRVIPTANTKRRKELREAIQKIELNHKAKIGNTKSIDSLISCS 88
+ + ++ T + + L ++KIE K + T+ + LIS +
Sbjct: 215 ERRRKEQLKKLFDRTTKQVEEEQMLLNELKKIEARKKERERKTQDLQKLISQA 267
>gi|219126164|ref|XP_002183333.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217405089|gb|EEC45033.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 516
Score = 34.3 bits (77), Expect = 5.5, Method: Composition-based stats.
Identities = 13/54 (24%), Positives = 25/54 (46%)
Query: 32 GDSKSQDNAKVVRADRVIPTANTKRRKELREAIQKIELNHKAKIGNTKSIDSLI 85
S+ + + A+R + KR+K+ E +++ + + K KSI LI
Sbjct: 262 ASSQKEKKQQKRAANRRSAQLSRKRKKQFVEELKEENDDLRRKEQILKSIPDLI 315
>gi|85074599|ref|XP_960766.1| hypothetical protein NCU09676 [Neurospora crassa OR74A]
gi|28922288|gb|EAA31530.1| predicted protein [Neurospora crassa OR74A]
gi|28949976|emb|CAD70737.1| conserved hypothetical protein [Neurospora crassa]
Length = 425
Score = 34.3 bits (77), Expect = 5.5, Method: Composition-based stats.
Identities = 11/75 (14%), Positives = 28/75 (37%), Gaps = 2/75 (2%)
Query: 6 SWFLVGLITVSVFCFLYAI-FYNVINPGDSKSQDNAKVVRADRVIPTANTKRRKELREAI 64
S+ L LI+ F + ++ + + + K+ R +R E ++
Sbjct: 15 SFILATLISTIAGTFTTGVNLFDRVGEA-RRQRRQRKMDRGQNRRIKELEQRLDEAVKSK 73
Query: 65 QKIELNHKAKIGNTK 79
++E ++ N +
Sbjct: 74 SEVEERQNSRNRNQR 88
>gi|170700845|ref|ZP_02891834.1| type II secretion system protein [Burkholderia ambifaria IOP40-10]
gi|170134253|gb|EDT02592.1| type II secretion system protein [Burkholderia ambifaria IOP40-10]
Length = 325
Score = 34.3 bits (77), Expect = 5.7, Method: Composition-based stats.
Identities = 14/124 (11%), Positives = 43/124 (34%), Gaps = 2/124 (1%)
Query: 8 FLVGLITVSVFCFLYAIFYNVINPGDSKSQDNAKVVRADRVIPTANTK-RRKELREAIQK 66
L + V +Y + + + + + A + +K + + +
Sbjct: 10 ILTFVAVVLAIEGVYQWWNARHGAAARRIESRLRAMSAGGSVQQERLSILKKRMLDESKP 69
Query: 67 IELNHKAKIGNTKSIDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLSSSFFTFLCVS 126
+ ++ +++D ++ SGL + + S V+ ++ T L ++
Sbjct: 70 FD-RLLMRVPRIQALDLVLQQSGLDWTVAKLVVISAVLAVTAALVLTVSPLPLITVLPIA 128
Query: 127 VSSA 130
+ +A
Sbjct: 129 LLTA 132
>gi|270003442|gb|EEZ99889.1| hypothetical protein TcasGA2_TC002673 [Tribolium castaneum]
Length = 966
Score = 34.3 bits (77), Expect = 5.8, Method: Composition-based stats.
Identities = 10/45 (22%), Positives = 22/45 (48%)
Query: 41 KVVRADRVIPTANTKRRKELREAIQKIELNHKAKIGNTKSIDSLI 85
KVV R P+ +R K+ +A++++E + + + L+
Sbjct: 450 KVVTPIRAPPSDAVQRAKDAADALRELEHRRDTDHRDLQELRDLL 494
>gi|189235646|ref|XP_968349.2| PREDICTED: similar to AGAP001683-PA [Tribolium castaneum]
Length = 893
Score = 34.3 bits (77), Expect = 5.8, Method: Composition-based stats.
Identities = 10/45 (22%), Positives = 22/45 (48%)
Query: 41 KVVRADRVIPTANTKRRKELREAIQKIELNHKAKIGNTKSIDSLI 85
KVV R P+ +R K+ +A++++E + + + L+
Sbjct: 387 KVVTPIRAPPSDAVQRAKDAADALRELEHRRDTDHRDLQELRDLL 431
>gi|66801013|ref|XP_629432.1| myb domain-containing protein [Dictyostelium discoideum AX4]
gi|60462823|gb|EAL61023.1| myb domain-containing protein [Dictyostelium discoideum AX4]
Length = 1221
Score = 34.3 bits (77), Expect = 5.9, Method: Composition-based stats.
Identities = 12/65 (18%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Query: 25 FYNVINPGDSKSQDNAKVVRADRVIPTANTKRRKELREAIQKIELNHKA--KIGNTKSID 82
N IN D + + + + R+ + R++ R+ +Q++E N + + KS +
Sbjct: 113 IQNGINRKDETEEARNERLESIRLEKERLKQIREQQRKQLQELEKNQRQQLQEDKEKSAN 172
Query: 83 SLISC 87
+ +
Sbjct: 173 ARLKY 177
>gi|325118771|emb|CBZ54322.1| conserved hypothetical protein [Neospora caninum Liverpool]
Length = 628
Score = 34.3 bits (77), Expect = 6.5, Method: Composition-based stats.
Identities = 10/61 (16%), Positives = 22/61 (36%)
Query: 73 AKIGNTKSIDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLSSSFFTFLCVSVSSALV 132
K + ++ + +G +S + S V I G+L + F + + L+
Sbjct: 512 QKTSDCEAASISLIQTGKNLSSKISVGVSGVAALIFGILGVMSGGISMLFPALFIVGGLL 571
Query: 133 F 133
Sbjct: 572 L 572
>gi|99080534|ref|YP_612688.1| Cl- channel, voltage gated [Ruegeria sp. TM1040]
gi|99036814|gb|ABF63426.1| Cl- channel voltage gated [Ruegeria sp. TM1040]
Length = 564
Score = 34.3 bits (77), Expect = 6.5, Method: Composition-based stats.
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 5/47 (10%)
Query: 96 HYYI---GSCVIGFICGVLSLTLSSSFFTF--LCVSVSSALVFPRFF 137
+Y+ ++G ICGV+++ L S F + +V SAL PR+
Sbjct: 250 QFYVELPAFLMLGLICGVVAVVLMHSIFLADRVGTAVQSALGMPRWL 296
>gi|229159365|ref|ZP_04287386.1| Molybdenum ABC transporter, periplasmic molybdate-binding protein
[Bacillus cereus R309803]
gi|228624116|gb|EEK80921.1| Molybdenum ABC transporter, periplasmic molybdate-binding protein
[Bacillus cereus R309803]
Length = 268
Score = 34.3 bits (77), Expect = 6.6, Method: Composition-based stats.
Identities = 20/79 (25%), Positives = 34/79 (43%), Gaps = 14/79 (17%)
Query: 1 MFDVNSWFLVGLITVSVFCFLYAIFYNVINPGDSKSQDNAKVVRADRVIPTANTKRRKEL 60
+ + + L L+ SV C GD K + AK +A + +A L
Sbjct: 6 LRSIGALILSFLLIFSVAC----------TSGDKKEKSTAKEEKAVELTISAAA----SL 51
Query: 61 REAIQKIELNHKAKIGNTK 79
++A+++IE +K K N K
Sbjct: 52 QDALKEIETKYKEKEPNIK 70
>gi|307177161|gb|EFN66394.1| Rab GTPase-binding effector protein 1 [Camponotus floridanus]
Length = 621
Score = 33.9 bits (76), Expect = 7.0, Method: Composition-based stats.
Identities = 13/74 (17%), Positives = 29/74 (39%), Gaps = 3/74 (4%)
Query: 26 YNVINPGDSKSQDNAKVVRADRVIPTANTKRRKELREAIQKIELNHKAKIGNTKSIDS-- 83
++ + + Q+ K + T +R K L++ + E K + ++S+
Sbjct: 473 EKKLDQLEKQLQEVEKEKKDAESAVTELQQRVKSLQQELDTSEAVQKDFVRLSQSLQVQL 532
Query: 84 -LISCSGLPISKQH 96
I +G + QH
Sbjct: 533 ERIRQAGSEVRWQH 546
>gi|149190330|ref|ZP_01868603.1| aerobic respiration control sensor protein ArcB [Vibrio shilonii
AK1]
gi|148835819|gb|EDL52783.1| aerobic respiration control sensor protein ArcB [Vibrio shilonii
AK1]
Length = 783
Score = 33.9 bits (76), Expect = 7.1, Method: Composition-based stats.
Identities = 12/84 (14%), Positives = 31/84 (36%), Gaps = 1/84 (1%)
Query: 2 FDVNSWFLVGLITVSVFCFLYAIFYNVINPGDSKSQDNAKVVRADRVIPTANT-KRRKEL 60
D+ GL+ + ++ + + + ++ R K ++ +
Sbjct: 53 IDIVRSVFFGLLITPWAVYFLSVVVDQLEESRQRLSKMVSKLKDMRSRDQDLNHKLQQNI 112
Query: 61 REAIQKIELNHKAKIGNTKSIDSL 84
R+ Q+IE KA+ +++ L
Sbjct: 113 RKLNQEIEERQKAEEAREEAMKDL 136
>gi|308176985|ref|YP_003916391.1| type II secretion system protein F [Arthrobacter arilaitensis
Re117]
gi|307744448|emb|CBT75420.1| putative type II secretion system protein F [Arthrobacter
arilaitensis Re117]
Length = 283
Score = 33.9 bits (76), Expect = 7.3, Method: Composition-based stats.
Identities = 8/60 (13%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
Query: 73 AKIGNTKSIDSLISCSGL-PISKQHYYIGSCVIGFICGVLSLTLSSSFFTFLCVSVSSAL 131
+ +I + + +G+ ++ + + V G +++L L++S+ L + +
Sbjct: 27 KSRNRSSAIKNALLHAGMGNLAPSKFIVICVVCGITFTLITLALTASWLFALVFCIFGSF 86
>gi|289670369|ref|ZP_06491444.1| two-component system sensor protein [Xanthomonas campestris pv.
musacearum NCPPB4381]
Length = 1057
Score = 33.9 bits (76), Expect = 7.5, Method: Composition-based stats.
Identities = 10/75 (13%), Positives = 27/75 (36%), Gaps = 2/75 (2%)
Query: 10 VGLITVSVFCFLYAIFYNVINPGDSKSQDNAKVVRADRVIPTANTKRRKELREAIQKIEL 69
+GL + L A ++ +S++ RV ++R+ L+++ +E+
Sbjct: 262 IGLALRT--ALLRAQLVTLLEETQRQSEELQTQQEELRVANEELEEQRRSLQQSQSDLEV 319
Query: 70 NHKAKIGNTKSIDSL 84
++
Sbjct: 320 QQAELEQTNVQLEER 334
>gi|118385165|ref|XP_001025720.1| hypothetical protein TTHERM_00929570 [Tetrahymena thermophila]
gi|89307487|gb|EAS05475.1| hypothetical protein TTHERM_00929570 [Tetrahymena thermophila
SB210]
Length = 206
Score = 33.9 bits (76), Expect = 8.1, Method: Composition-based stats.
Identities = 20/110 (18%), Positives = 46/110 (41%), Gaps = 10/110 (9%)
Query: 2 FDVNSWFLVGLITVSVFCFLYAIFYNVINPGDS-------KSQDNAKVVRADRVIPTANT 54
FD+ ++ +G I ++ +AIFY I + K + ++ +
Sbjct: 71 FDLVAFMKLGAILLTPGFIFFAIFYKFIKKSEQNNQEYFDKLEKTKGTETSEADKASKMK 130
Query: 55 KRRKELREAIQKIELNHKAKIGNTK---SIDSLISCSGLPISKQHYYIGS 101
+ K++++++QK + + G +K S L+ + S Q +I +
Sbjct: 131 ESLKKIQKSMQKDKSSESQLQGKSKFKYSTSFLLPQTPFSSSVQKPFIFN 180
>gi|310830507|ref|YP_003965608.1| hypothetical protein PPSC2_p0147 [Paenibacillus polymyxa SC2]
gi|309249974|gb|ADO59540.1| Putative uncharacterized protein [Paenibacillus polymyxa SC2]
Length = 313
Score = 33.9 bits (76), Expect = 8.3, Method: Composition-based stats.
Identities = 11/93 (11%), Positives = 37/93 (39%), Gaps = 11/93 (11%)
Query: 54 TKRRKELREAIQKIELNHK--------AKIGNTKSIDSLISCSGLPISKQHYYIGSCVIG 105
KR+++ + +++ L + + +I++L +G P++ Y + S
Sbjct: 30 EKRKEQSKNLLRENVLKQRIEQIAEGRVRYSKRYAIETLCMQAGFPLTYAEYLMISVASA 89
Query: 106 F-ICGVLSLTLSSSFFTFLCVSVSSALVFPRFF 137
+ + + +++ + + + P+ F
Sbjct: 90 LIVAIFVGMVMNNPILGI--IFLIVGYMIPKQF 120
>gi|116873031|ref|YP_849812.1| transposase, putative [Listeria welshimeri serovar 6b str.
SLCC5334]
gi|116873602|ref|YP_850383.1| transposase, putative [Listeria welshimeri serovar 6b str.
SLCC5334]
gi|116741909|emb|CAK21033.1| transposase, putative [Listeria welshimeri serovar 6b str.
SLCC5334]
gi|116742480|emb|CAK21604.1| transposase, putative [Listeria welshimeri serovar 6b str.
SLCC5334]
Length = 183
Score = 33.9 bits (76), Expect = 8.3, Method: Composition-based stats.
Identities = 7/39 (17%), Positives = 15/39 (38%)
Query: 46 DRVIPTANTKRRKELREAIQKIELNHKAKIGNTKSIDSL 84
R KR+K +++ + ++E K + L
Sbjct: 116 GRPPKMDAKKRKKSVQDNLTQLEKLEKENRMLKIELSYL 154
>gi|242242041|ref|ZP_04796486.1| conserved hypothetical protein [Staphylococcus epidermidis W23144]
gi|242234515|gb|EES36827.1| conserved hypothetical protein [Staphylococcus epidermidis W23144]
Length = 231
Score = 33.9 bits (76), Expect = 8.5, Method: Composition-based stats.
Identities = 14/66 (21%), Positives = 24/66 (36%), Gaps = 3/66 (4%)
Query: 26 YNVINPGDSKSQDNAKVVRADRVIPTANTKRRKELREAIQKIELNHKAKIGNTKSIDSLI 85
Y Q+ + + D+ + KR KE + ++ E N K +I + K
Sbjct: 92 YIEKKGEKLAKQNRKEADKMDKKLQKNIEKRHKEEQ---KQREANQKQRIKDMKKSQKYE 148
Query: 86 SCSGLP 91
GL
Sbjct: 149 EQVGLT 154
>gi|123475590|ref|XP_001320972.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121903788|gb|EAY08749.1| hypothetical protein TVAG_251750 [Trichomonas vaginalis G3]
Length = 1197
Score = 33.5 bits (75), Expect = 9.2, Method: Composition-based stats.
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Query: 26 YNVINPGDSKSQDNAKVVRADRVIPTANTKRRKELREAIQKIELNHKAKIGNTKSIDSLI 85
+N I+ DSK + K + + R K L I++IE K KI NT +++ I
Sbjct: 474 FNKISENDSKISELNKQISNLSSKLNESESRNKSLENKIKEIES--KNKINNTSDLENKI 531
>gi|251810109|ref|ZP_04824582.1| conserved hypothetical protein [Staphylococcus epidermidis
BCM-HMP0060]
gi|293368134|ref|ZP_06614766.1| hypothetical protein HMPREF0794_2048 [Staphylococcus epidermidis
M23864:W2(grey)]
gi|251806453|gb|EES59110.1| conserved hypothetical protein [Staphylococcus epidermidis
BCM-HMP0060]
gi|291317824|gb|EFE58238.1| hypothetical protein HMPREF0794_2048 [Staphylococcus epidermidis
M23864:W2(grey)]
Length = 231
Score = 33.5 bits (75), Expect = 9.3, Method: Composition-based stats.
Identities = 14/66 (21%), Positives = 24/66 (36%), Gaps = 3/66 (4%)
Query: 26 YNVINPGDSKSQDNAKVVRADRVIPTANTKRRKELREAIQKIELNHKAKIGNTKSIDSLI 85
Y Q+ + + D+ + KR KE + ++ E N K +I + K
Sbjct: 92 YIEKKGEKLAKQNRKEADKMDKKLQKNIEKRHKEEQ---KQREANQKQRIKDMKKTQKYE 148
Query: 86 SCSGLP 91
GL
Sbjct: 149 EQVGLT 154
>gi|326388861|ref|ZP_08210443.1| type II secretion system protein [Novosphingobium nitrogenifigens
DSM 19370]
gi|326206461|gb|EGD57296.1| type II secretion system protein [Novosphingobium nitrogenifigens
DSM 19370]
Length = 323
Score = 33.5 bits (75), Expect = 9.4, Method: Composition-based stats.
Identities = 17/130 (13%), Positives = 42/130 (32%), Gaps = 7/130 (5%)
Query: 12 LITVSVFCFLYAIFYNVINPGDSKSQDNAKVVRADRVIPTANTKRRKELREAIQKIELNH 71
L+ + + +A + P ++ R + K + R+A+ +
Sbjct: 8 LMAIGLTVAAWAGITLFMGPNPARESSRRLQAVKLRHSESTTDKVEAQYRKALAARKPKA 67
Query: 72 KAKIGNT---KSIDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTL--SSSFFTFLCVS 126
G++ +++ + +G + Y S +G + S S L +
Sbjct: 68 YKLAGSSSRLEALSLRLDRTGRGWTISQYLYAS--LGLVILFGGFVWIKSGSLVLGLALG 125
Query: 127 VSSALVFPRF 136
++ P F
Sbjct: 126 IAIGAGLPHF 135
>gi|71421983|ref|XP_811977.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
gi|70876703|gb|EAN90126.1| hypothetical protein, conserved [Trypanosoma cruzi]
Length = 1363
Score = 33.5 bits (75), Expect = 9.4, Method: Composition-based stats.
Identities = 16/62 (25%), Positives = 28/62 (45%)
Query: 30 NPGDSKSQDNAKVVRADRVIPTANTKRRKELREAIQKIELNHKAKIGNTKSIDSLISCSG 89
N S K +AD+ A+ R +L EA+Q+ E H+ ++ + +L SG
Sbjct: 377 NSSTSTPLTARKGEKADQDTVRASQNLRVQLDEALQQREEVHRELERTSEELAALREQSG 436
Query: 90 LP 91
+
Sbjct: 437 VD 438
>gi|319401249|gb|EFV89461.1| conserved hypothetical protein [Staphylococcus epidermidis FRI909]
Length = 226
Score = 33.5 bits (75), Expect = 9.7, Method: Composition-based stats.
Identities = 14/66 (21%), Positives = 24/66 (36%), Gaps = 3/66 (4%)
Query: 26 YNVINPGDSKSQDNAKVVRADRVIPTANTKRRKELREAIQKIELNHKAKIGNTKSIDSLI 85
Y Q+ + + D+ + KR KE + ++ E N K +I + K
Sbjct: 87 YIEKKGEKLAKQNRKEADKMDKKLQKNIEKRHKEEQ---KQREANQKQRIKDMKKSQKYE 143
Query: 86 SCSGLP 91
GL
Sbjct: 144 EQVGLT 149
>gi|289583130|ref|YP_003481596.1| ribonuclease BN [Natrialba magadii ATCC 43099]
gi|289532683|gb|ADD07034.1| ribonuclease BN [Natrialba magadii ATCC 43099]
Length = 378
Score = 33.5 bits (75), Expect = 9.9, Method: Composition-based stats.
Identities = 17/80 (21%), Positives = 33/80 (41%), Gaps = 1/80 (1%)
Query: 6 SWFLVGLITVSVFCFLYAIFYNVINPGDSKSQDNAKVVRADRVIPTANTKR-RKELREAI 64
+W G + + V + A+ + P D +S + DR +T+R R+ LR I
Sbjct: 238 TWLYFGGLILLVGAVINAVGTGRLEPTDEESLSQTSIAATDREAFVDDTQRERERLRNRI 297
Query: 65 QKIELNHKAKIGNTKSIDSL 84
+++E + + S
Sbjct: 298 ERLERERAQLRNDLAAQRSR 317
>gi|27467370|ref|NP_764007.1| hypothetical protein SE0452 [Staphylococcus epidermidis ATCC 12228]
gi|57866269|ref|YP_187933.1| hypothetical protein SERP0337 [Staphylococcus epidermidis RP62A]
gi|282874857|ref|ZP_06283732.1| conserved hypothetical protein [Staphylococcus epidermidis SK135]
gi|27314913|gb|AAO04049.1|AE016745_148 conserved hypothetical protein [Staphylococcus epidermidis ATCC
12228]
gi|57636927|gb|AAW53715.1| conserved hypothetical protein [Staphylococcus epidermidis RP62A]
gi|281296185|gb|EFA88704.1| conserved hypothetical protein [Staphylococcus epidermidis SK135]
gi|329733292|gb|EGG69627.1| hypothetical protein SEVCU045_0175 [Staphylococcus epidermidis
VCU045]
Length = 226
Score = 33.5 bits (75), Expect = 9.9, Method: Composition-based stats.
Identities = 14/66 (21%), Positives = 24/66 (36%), Gaps = 3/66 (4%)
Query: 26 YNVINPGDSKSQDNAKVVRADRVIPTANTKRRKELREAIQKIELNHKAKIGNTKSIDSLI 85
Y Q+ + + D+ + KR KE + ++ E N K +I + K
Sbjct: 87 YIEKKGEKLAKQNRKEADKMDKKLQKNIEKRHKEEQ---KQREANQKQRIKDMKKTQKYE 143
Query: 86 SCSGLP 91
GL
Sbjct: 144 EQVGLT 149
Database: nr
Posted date: May 22, 2011 12:22 AM
Number of letters in database: 999,999,966
Number of sequences in database: 2,987,313
Database: /data/usr2/db/fasta/nr.01
Posted date: May 22, 2011 12:30 AM
Number of letters in database: 999,999,796
Number of sequences in database: 2,903,041
Database: /data/usr2/db/fasta/nr.02
Posted date: May 22, 2011 12:36 AM
Number of letters in database: 999,999,281
Number of sequences in database: 2,904,016
Database: /data/usr2/db/fasta/nr.03
Posted date: May 22, 2011 12:41 AM
Number of letters in database: 999,999,960
Number of sequences in database: 2,935,328
Database: /data/usr2/db/fasta/nr.04
Posted date: May 22, 2011 12:46 AM
Number of letters in database: 842,794,627
Number of sequences in database: 2,394,679
Lambda K H
0.316 0.136 0.320
Lambda K H
0.267 0.0414 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,918,080,105
Number of Sequences: 14124377
Number of extensions: 57176824
Number of successful extensions: 507168
Number of sequences better than 10.0: 657
Number of HSP's better than 10.0 without gapping: 330
Number of HSP's successfully gapped in prelim test: 379
Number of HSP's that attempted gapping in prelim test: 505339
Number of HSP's gapped (non-prelim): 1936
length of query: 137
length of database: 4,842,793,630
effective HSP length: 102
effective length of query: 35
effective length of database: 3,402,107,176
effective search space: 119073751160
effective search space used: 119073751160
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.1 bits)
S2: 75 (33.5 bits)