RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254780723|ref|YP_003065136.1| hypothetical protein
CLIBASIA_03050 [Candidatus Liberibacter asiaticus str. psy62]
(137 letters)
>gnl|CDD|147186 pfam04889, Cwf_Cwc_15, Cwf15/Cwc15 cell cycle control protein.
This family represents Cwf15/Cwc15 (from
Schizosaccharomyces pombe and Saccharomyces cerevisiae
respectively) and their homologues. The function of
these proteins is unknown, but they form part of the
spliceosome and are thus thought to be involved in mRNA
splicing.
Length = 241
Score = 28.5 bits (64), Expect = 0.58
Identities = 13/52 (25%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Query: 43 VRADRVIPTANTKRRKELREAIQKIELNHKAKIGNTKSIDSLISCSGLPISK 94
R T + R+++LR +++ E HK+K N +I+ + L S
Sbjct: 43 YRQPG-QGTEDELRKRDLRAELEEAERAHKSKKENKLAIEDGDKSTNLEASN 93
>gnl|CDD|145277 pfam02009, Rifin_STEVOR, Rifin/stevor family. Several multicopy
gene families have been described in Plasmodium
falciparum, including the stevor family of subtelomeric
open reading frames and the rif interspersed repetitive
elements. Both families contain three predicted
transmembrane segments. It has been proposed that stevor
and rif are members of a larger superfamily that code
for variant surface antigens.
Length = 289
Score = 27.3 bits (61), Expect = 1.6
Identities = 19/77 (24%), Positives = 27/77 (35%), Gaps = 10/77 (12%)
Query: 63 AIQK-IELNHKAKIGNTKSIDSLI------SCSGLPISKQHYYIGSCVIGFI--CGVLSL 113
AIQK IE A + K + + SG+ I+ +Y +IG I
Sbjct: 130 AIQKGIEAGIAAGLKKLKGLGKYVVILKLRCTSGI-INASNYSAPLTLIGAIAAKAATIC 188
Query: 114 TLSSSFFTFLCVSVSSA 130
SS+ C S
Sbjct: 189 VASSANEGSKCCFSSKI 205
>gnl|CDD|32053 COG1868, FliM, Flagellar motor switch protein [Cell motility and
secretion].
Length = 332
Score = 26.4 bits (58), Expect = 2.9
Identities = 9/26 (34%), Positives = 18/26 (69%)
Query: 54 TKRRKELREAIQKIELNHKAKIGNTK 79
+ RKELR+ +Q++E+ +A++G
Sbjct: 240 PEWRKELRQQVQRVEVELEARLGEIS 265
>gnl|CDD|37247 KOG2036, KOG2036, KOG2036, Predicted P-loop ATPase fused to an
acetyltransferase [General function prediction only].
Length = 1011
Score = 26.1 bits (57), Expect = 3.7
Identities = 10/49 (20%), Positives = 18/49 (36%)
Query: 34 SKSQDNAKVVRADRVIPTANTKRRKELREAIQKIELNHKAKIGNTKSID 82
K+ + DRV +L EA ++ E + K K+ +
Sbjct: 902 EKAIEETLPREKDRVNEPTPVSLEDDLEEAAKEAEEQMREKQKELKAEE 950
>gnl|CDD|147654 pfam05600, DUF773, Protein of unknown function (DUF773). This
family contains several eukaryotic sequences which are
thought to be CDK5 activator-binding proteins, however,
the function of this family is unknown.
Length = 506
Score = 25.8 bits (57), Expect = 4.3
Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 3/41 (7%)
Query: 54 TKRRKELREAIQKIELNHKAKIGNTKSIDSLISCSGLPISK 94
T++R+E RE +E I T+ + LI ISK
Sbjct: 458 TEKRQEAREEQSSLEPKLDLLIEKTRELQKLIEAD---ISK 495
>gnl|CDD|37642 KOG2431, KOG2431, KOG2431, 1, 2-alpha-mannosidase [Carbohydrate
transport and metabolism].
Length = 546
Score = 25.7 bits (56), Expect = 4.6
Identities = 7/39 (17%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 6 SWFLVGLITVSVFCFLYAIFYNVINPGDSKSQDNAKVVR 44
WF++ ++ +F L ++ N NP + + + + +
Sbjct: 10 KWFILFILAFLLFVLL-LLYINPANPAELPNPQSGQKTK 47
>gnl|CDD|32366 COG2183, Tex, Transcriptional accessory protein [Transcription].
Length = 780
Score = 25.2 bits (55), Expect = 5.4
Identities = 7/47 (14%), Positives = 18/47 (38%), Gaps = 3/47 (6%)
Query: 34 SKSQDNAKVVRADRVIPTANTKRRKELREAIQKIELNHKAK---IGN 77
+ D K++ + P + + ++ + +K + IGN
Sbjct: 346 AVVDDTGKLLDTATIYPHPPVNQSDKAEATLKDLIRKYKVELIAIGN 392
>gnl|CDD|30369 COG0019, LysA, Diaminopimelate decarboxylase [Amino acid transport
and metabolism].
Length = 394
Score = 24.9 bits (54), Expect = 7.9
Identities = 4/24 (16%), Positives = 12/24 (50%)
Query: 43 VRADRVIPTANTKRRKELREAIQK 66
+R++ + K +E+ A++
Sbjct: 94 FPPERIVFSGPAKSEEEIAFALEL 117
>gnl|CDD|36896 KOG1683, KOG1683, KOG1683, Hydroxyacyl-CoA dehydrogenase/enoyl-CoA
hydratase [Lipid transport and metabolism].
Length = 380
Score = 24.9 bits (54), Expect = 8.1
Identities = 16/66 (24%), Positives = 30/66 (45%), Gaps = 4/66 (6%)
Query: 38 DNAKVVRADRVIP--TANTKRRKELREAIQKIELNHKAKIGNTKSIDSLISCSGLPISKQ 95
D AD VI + + + EL ++++K+E + NT S+D + +GL +
Sbjct: 63 DYTGFANADMVIEAVFEDLELKHELFKSLEKVEPPKCIRGSNTSSLDINVISAGL--DRP 120
Query: 96 HYYIGS 101
+G
Sbjct: 121 EMVVGM 126
>gnl|CDD|31310 COG1113, AnsP, Gamma-aminobutyrate permease and related permeases
[Amino acid transport and metabolism].
Length = 462
Score = 24.8 bits (54), Expect = 8.2
Identities = 9/39 (23%), Positives = 15/39 (38%)
Query: 99 IGSCVIGFICGVLSLTLSSSFFTFLCVSVSSALVFPRFF 137
+ S V+ + VL+ L F + S L+F
Sbjct: 340 LLSAVVLLLGVVLNYILPEKVFELVTSSSGLGLLFVWLM 378
>gnl|CDD|143501 cd06828, PLPDE_III_DapDC, Type III Pyridoxal 5-phosphate
(PLP)-Dependent Enzyme Diaminopimelate Decarboxylase.
Diaminopimelate decarboxylase (DapDC, EC 4.1.1.20)
participates in the last step of lysine biosynthesis.
It converts meso-2,6-diaminoheptanedioate to L-lysine.
It is a fold type III PLP-dependent enzyme that
contains an N-terminal PLP-binding TIM-barrel domain
and a C-terminal beta-sandwich domain, similar to
bacterial alanine racemases. DapDC exists as homodimers
with active sites that lie at the interface between the
TIM barrel domain of one subunit and the beta-sandwich
domain of the other subunit. Homodimer formation and
the presence of the PLP cofactor are required for
catalytic activity.
Length = 373
Score = 24.8 bits (55), Expect = 9.5
Identities = 7/24 (29%), Positives = 13/24 (54%)
Query: 43 VRADRVIPTANTKRRKELREAIQK 66
+R++ T N K +EL A++
Sbjct: 70 FPPERIVFTGNGKSDEELELALEL 93
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.327 0.139 0.418
Gapped
Lambda K H
0.267 0.0736 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 1,589,937
Number of extensions: 73845
Number of successful extensions: 424
Number of sequences better than 10.0: 1
Number of HSP's gapped: 423
Number of HSP's successfully gapped: 39
Length of query: 137
Length of database: 6,263,737
Length adjustment: 84
Effective length of query: 53
Effective length of database: 4,448,581
Effective search space: 235774793
Effective search space used: 235774793
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 52 (23.8 bits)