RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254780723|ref|YP_003065136.1| hypothetical protein
CLIBASIA_03050 [Candidatus Liberibacter asiaticus str. psy62]
         (137 letters)



>2avt_A DNA polymerase III beta subunit; beta clamp, sliding
          clamp, replication, transferase; HET: DNA; 2.00A
          {Streptococcus pyogenes} PDB: 2awa_A*
          (A:140-204,A:253-378)
          Length = 191

 Score = 29.7 bits (67), Expect = 0.13
 Identities = 9/36 (25%), Positives = 16/36 (44%), Gaps = 4/36 (11%)

Query: 38 DNAKVVRADRVIPTANTKR----RKELREAIQKIEL 69
           +  VV  DR++ T          + LR A+++  L
Sbjct: 58 ADFMVVLPDRLLMTEFETEVVFNTQSLRHAMERAFL 93


>1s6y_A 6-phospho-beta-glucosidase; hydrolase, structural genomics,
           PSI, protein structure initiative; 2.31A {Geobacillus
           stearothermophilus} (A:1-175,A:282-450)
          Length = 344

 Score = 29.2 bits (65), Expect = 0.21
 Identities = 12/58 (20%), Positives = 21/58 (36%), Gaps = 6/58 (10%)

Query: 23  AIFYNVINPGDSKSQDNAKVVRADRVIPTANT------KRRKELREAIQKIELNHKAK 74
           A   N  NP    ++   +  + ++V+    T      +  KEL E  +   L  K  
Sbjct: 146 AWLINFTNPAGXVTEAVLRYTKQEKVVGLCGTRAEVVQQLEKELFELYKDPNLAIKPP 203


>1xva_A Glycine N-methyltransferase; HET: SAM; 2.20A {Escherichia
           coli} (A:1-39,A:177-245)
          Length = 108

 Score = 24.8 bits (54), Expect = 4.2
 Identities = 10/30 (33%), Positives = 14/30 (46%)

Query: 75  IGNTKSIDSLISCSGLPISKQHYYIGSCVI 104
           IG+T+S D ++S    P  K  YY      
Sbjct: 34  IGDTRSYDYILSTGCAPPGKNIYYKSDLTK 63


>2owl_A Recombination-associated protein RDGC; replication, RECA;
           2.40A {Escherichia coli} (A:)
          Length = 303

 Score = 24.7 bits (54), Expect = 4.5
 Identities = 8/33 (24%), Positives = 16/33 (48%), Gaps = 2/33 (6%)

Query: 47  RVIPTANTKRRKELREAIQKIELNHKAKIGNTK 79
           +++P+   K  + L   I K+E     K+  T+
Sbjct: 73  KILPSPVIK--QALEAKIAKLEAEQARKLKKTE 103


>1rz2_A Conserved hypothetical protein BA4783; sortase B protein,
          B. anthracis, structural genomics, PSI, protein
          structure initiative; 1.60A {Bacillus anthracis str}
          (A:)
          Length = 254

 Score = 24.0 bits (51), Expect = 7.0
 Identities = 10/74 (13%), Positives = 25/74 (33%), Gaps = 2/74 (2%)

Query: 5  NSWFLVGLITVSVFCFLYAIFYNVINPGDSKSQDNA--KVVRADRVIPTANTKRRKELRE 62
            +F   L  V +  F Y+++       D         +        P     +  E+R+
Sbjct: 10 KIFFQRILTVVFLGTFFYSVYELGDIFMDYYENRKVMAEAQNIYEKSPMEEQSQDGEVRK 69

Query: 63 AIQKIELNHKAKIG 76
            + ++  ++  +G
Sbjct: 70 QFKALQQINQEIVG 83


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.327    0.139    0.418 

Gapped
Lambda     K      H
   0.267   0.0678    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 978,727
Number of extensions: 38070
Number of successful extensions: 104
Number of sequences better than 10.0: 1
Number of HSP's gapped: 104
Number of HSP's successfully gapped: 9
Length of query: 137
Length of database: 4,956,049
Length adjustment: 80
Effective length of query: 57
Effective length of database: 2,251,649
Effective search space: 128343993
Effective search space used: 128343993
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 50 (23.1 bits)