BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780723|ref|YP_003065136.1| hypothetical protein
CLIBASIA_03050 [Candidatus Liberibacter asiaticus str. psy62]
         (137 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780723|ref|YP_003065136.1| hypothetical protein CLIBASIA_03050 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 137

 Score =  278 bits (712), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 137/137 (100%), Positives = 137/137 (100%)

Query: 1   MFDVNSWFLVGLITVSVFCFLYAIFYNVINPGDSKSQDNAKVVRADRVIPTANTKRRKEL 60
           MFDVNSWFLVGLITVSVFCFLYAIFYNVINPGDSKSQDNAKVVRADRVIPTANTKRRKEL
Sbjct: 1   MFDVNSWFLVGLITVSVFCFLYAIFYNVINPGDSKSQDNAKVVRADRVIPTANTKRRKEL 60

Query: 61  REAIQKIELNHKAKIGNTKSIDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLSSSFF 120
           REAIQKIELNHKAKIGNTKSIDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLSSSFF
Sbjct: 61  REAIQKIELNHKAKIGNTKSIDSLISCSGLPISKQHYYIGSCVIGFICGVLSLTLSSSFF 120

Query: 121 TFLCVSVSSALVFPRFF 137
           TFLCVSVSSALVFPRFF
Sbjct: 121 TFLCVSVSSALVFPRFF 137


>gi|254780370|ref|YP_003064783.1| argininosuccinate lyase [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 473

 Score = 24.6 bits (52), Expect = 0.68,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 6/50 (12%)

Query: 54  TKRRKELREAIQKIELNHKAKIGNTKSIDSLISCSGLPISKQHYYIGSCV 103
           T  +  L+EA  K   +H      T   D L+S +GLP  + HY  G  V
Sbjct: 359 TVNKDRLQEAATK---SHSTA---TDLADWLVSHAGLPFREAHYITGCTV 402


>gi|254780241|ref|YP_003064654.1| preprotein translocase subunit SecY [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 444

 Score = 23.5 bits (49), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 22/88 (25%), Positives = 37/88 (42%), Gaps = 11/88 (12%)

Query: 12  LITVSVFCFLYAIFYNVINPGDSKSQDNAKVVRADRVIPTANTKRRKELREAIQKIELNH 71
           ++  SVF   +A FY  I     ++ DN K  +    IP      R  L   I  + L  
Sbjct: 319 MVLYSVFIVFFAFFYTAIVFNPKEAADNLK--KHGGFIPGIRPGDRTALH--IDYV-LTR 373

Query: 72  KAKIGNTKSI------DSLISCSGLPIS 93
              +G    +      ++LI+ +G+P+S
Sbjct: 374 VTVVGAGYLVCVCIFPEALIAVTGVPVS 401


>gi|254780721|ref|YP_003065134.1| pilus component protein [Candidatus Liberibacter asiaticus str.
          psy62]
          Length = 329

 Score = 21.9 bits (45), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 18/85 (21%), Positives = 39/85 (45%), Gaps = 8/85 (9%)

Query: 1  MFDVNSWFLVGLITVSVFCFLYAIFYNVINPGDSKSQDNAKVVRADRVIPTANTKRRKEL 60
          +FD     +     VS+F  +YA+    +  G+ + +   K V  +R I       RK+ 
Sbjct: 8  LFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKR--MKSVAVEREI------LRKQQ 59

Query: 61 REAIQKIELNHKAKIGNTKSIDSLI 85
            ++QK   + + +  ++KS+ + +
Sbjct: 60 ITSLQKDSASSRLRTRDSKSLRNFV 84


>gi|254780395|ref|YP_003064808.1| organic solvent tolerance protein [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 762

 Score = 21.9 bits (45), Expect = 5.0,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 24/62 (38%), Gaps = 4/62 (6%)

Query: 22 YAIFYNVINPGDSKSQDNAKVVRADRVIPTANTKRRKELREAIQKIELNHKAK----IGN 77
          + + +N+I P  +   +          I    T R  EL  +  +I LN +      +GN
Sbjct: 14 FFLAFNIITPQGTPPSNEQTTTSTPSKIKKNETNRHSELDISSDEIVLNSEGSTTTAVGN 73

Query: 78 TK 79
           K
Sbjct: 74 VK 75


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.327    0.139    0.418 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 87,114
Number of Sequences: 1233
Number of extensions: 3246
Number of successful extensions: 16
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 12
Number of HSP's gapped (non-prelim): 7
length of query: 137
length of database: 328,796
effective HSP length: 65
effective length of query: 72
effective length of database: 248,651
effective search space: 17902872
effective search space used: 17902872
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 34 (17.7 bits)