HHsearch alignment for GI: 254780724 and conserved domain: CHL00081

Probab=96.79  E-value=0.0023  Score=42.16  Aligned_cols=155  Identities=16%  Similarity=0.233  Sum_probs=86.5

Q ss_pred             HHHHHHHHCCC-CCEEEECCCCCCHHHHHHHHHHHCCCCCCE-----EEEECCHHHCCCC--------C------CEEEE
Q ss_conf             99989862258-848998188888889999998303876767-----9996421312567--------8------75677
Q gi|254780724|r  240 ARLLQIIGRIR-CNVLISGGTGSGKTTLLNCLTRYIDKDERI-----VTCEDTAELQLQQ--------P------HVVRL  299 (483)
Q Consensus       240 ~~~l~~~v~~~-~nilVsG~TGSGKTT~L~al~~~i~~~~ri-----vtIED~~El~l~~--------~------~~v~~  299 (483)
T Consensus        22 ~aLll~av~p~iGgVLi~G~~GtgKStlvRala~lLP~i~~v~~~~f~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~p~  101 (347)
T CHL00081         22 LALLLNVIDPKIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKNDPFNSDPRDPDLMSDEVRERIRNGEKIPTKKIKIPM  101 (347)
T ss_pred             HHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCEECCCCE
T ss_conf             99999825788786998789987499999999985787422068876789898100242666543146667521146862


Q ss_pred             EEECCC-CCC--CCCCHHHHHHHHHH---------HCCCCEEEECCCC--CHHHH-HHHHHHHCCCCE----EEHHHCCC
Q ss_conf             874166-665--30001899998752---------0599889965758--79999-999998739701----02000478
Q gi|254780724|r  300 ETRPPN-IEG--EGEITMRDLVKNCL---------RMRPERIILGEVR--GPEVL-DLLQAMNTGHDG----SMGTIHAN  360 (483)
Q Consensus       300 ~~~~~~-~e~--~~~~t~~~ll~~aL---------R~~PD~IiVGEiR--g~Ea~-~~l~A~~TGH~G----~ltTlHa~  360 (483)
T Consensus       102 v~lPlgaTEDrv~GslDie~al~~G~~~f~pGlLa~A~rGiLyvDEINll~d~~v~~LLda~a~G~~~VEReG~S~~~--  179 (347)
T CHL00081        102 VDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDHLVDILLDSAASGWNTVEREGISIRH--  179 (347)
T ss_pred             EECCCCCCCCEECCCHHHHHHHHCCCCCCCCCHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCEEEECCCCEEECC--
T ss_conf             536888852301140009989845871156531222038858861454323799999999985580898046423305--


Q ss_pred             CHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCEEEEEEECCC
Q ss_conf             88889999997553046799989999999742358899987699
Q gi|254780724|r  361 NARESFGRMEAMIAMGGFTLPSQMVREIITSSLDVIVQTQRLRD  404 (483)
Q Consensus       361 s~~~ai~RL~~m~~~~~~~~~~~~~~~~ia~avd~iV~~~r~~d  404 (483)
T Consensus       180 -----Pa~F~liaT~N---PeEgeLrp~llDRF~l~v~v~~~~~  215 (347)
T CHL00081        180 -----PARFVLIGSGN---PEEGELRPQLLDRFGMHAEIRTVKD  215 (347)
T ss_pred             -----CCCEEEEECCC---CCCCCCCHHHHHHEEEEEECCCCCC
T ss_conf             -----75006885578---6556748888826322674588789