HHsearch alignment for GI: 254780724 and conserved domain: CHL00095

Probab=97.50  E-value=0.00025  Score=48.85  Aligned_cols=99  Identities=23%  Similarity=0.392  Sum_probs=66.0

Q ss_pred             HCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEECCHHHCCCCCCEEEEE--EECCCCCCCCCCHHHHHHHHHHHC
Q ss_conf             225884899818888888999999830387676799964213125678756778--741666653000189999875205
Q gi|254780724|r  247 GRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCEDTAELQLQQPHVVRLE--TRPPNIEGEGEITMRDLVKNCLRM  324 (483)
Q Consensus       247 v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED~~El~l~~~~~v~~~--~~~~~~e~~~~~t~~~ll~~aLR~  324 (483)
T Consensus       536 ~rPigsFlf~GPTGvGKTElAK~LA~~LFg~e~~liR~DMSEy~E~h--svsrLIGaPPGYV----Gy~eGG~LTeaVrr  609 (823)
T CHL00095        536 NRPIASFIFCGPTGVGKTELTKALASYFFGSEEAMIRLDMSEYMEKH--TVSKLIGSPPGYV----GYNEGGQLTEAVRK  609 (823)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCCC--CHHHHCCCCCCCC----CCCCCCCHHHHHHC
T ss_conf             99746899878998877999999999974782025885351015542--0767458998766----77878820198871


Q ss_pred             CCCE-EEECCCC--CHHHHHH-HHHHHCCCC
Q ss_conf             9988-9965758--7999999-999873970
Q gi|254780724|r  325 RPER-IILGEVR--GPEVLDL-LQAMNTGHD  351 (483)
Q Consensus       325 ~PD~-IiVGEiR--g~Ea~~~-l~A~~TGH~  351 (483)
T Consensus       610 ~PysVvLfDEIEKAHpdV~nilLQvlDdG~L  640 (823)
T CHL00095        610 KPYTVVLFDEIEKAHPDIFNLLLQILDDGRL  640 (823)
T ss_pred             CCCEEEEECHHHHCCHHHHHHHHHHCCCCCC
T ss_conf             9986998621311388999988765168843