HHsearch alignment for GI: 254780724 and conserved domain: COG0630
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion].
Probab=100.00 E-value=0 Score=436.92 Aligned_cols=297 Identities=39% Similarity=0.647 Sum_probs=263.0
Q ss_pred HHHHHHHHHHHCCCCCHHHHCCCCCCEEEEECCCCEEEEECC-EEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEE
Q ss_conf 999999998856563358858833217998569918998278-3897176207989999999999998098124338778
Q gi|254780724|r 112 DLFEDLCNDILGYGPLQPLIARDDIADIMVNGSNKVFIEVNG-KTVETGINFRDNEQLLSVCQRIVNQVGRRVDESSPIC 190 (483)
Q Consensus 112 ~l~~~i~~e~~glGpL~~ll~D~~VsdI~ing~~~I~ve~~G-~~~~~~~~f~~~~~l~~~i~rla~~~g~~i~~~~P~~ 190 (483)
T Consensus 3 ~~~~~~~~~~~g~g~l~p~l~D~~iedI~~n~~~~v~v~~~~~~~~~~~~~~~~~~~l~~~~~~~a~~~gk~is~~~Pi~ 82 (312)
T COG0630 3 KIRYYIPREIIGLGKLEPLLRDPRIEDIVVNGPGPVYVEHKGGGSYVTNIPFLTEEELDSLAIRLAQRSGKPISEANPIL 82 (312)
T ss_pred HHHHHHHHHHCCCCCCCHHHCCCCCEEEEECCCCCEEEEEECCCEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCE
T ss_conf 46543155542652353001389840699728962899970675034255456788999999999986299667888716
Q ss_pred EEEECCCCEEEEECCCC-CCCCCEEEEEECCCCCCCHHHHHHCCCCCHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHH
Q ss_conf 79823762034531553-57881688840576546678886506998899999898622588489981888888899999
Q gi|254780724|r 191 DARLLDGSRVNVIIPPL-ALDGPTLTIRKFKKDKLTLDHLVSFGAVTAEGARLLQIIGRIRCNVLISGGTGSGKTTLLNC 269 (483)
Q Consensus 191 d~~lpdg~Ri~~~~~p~-s~~G~~i~IRk~~~~~~~l~~l~~~g~~~~~~~~~l~~~v~~~~nilVsG~TGSGKTT~L~a 269 (483)
T Consensus 83 ~~~lp~g~Ri~i~~~~~v~~~~~s~~IRk~~~~~~t~~~l~~~gt~~~~~~ayL~~~ie~~~siii~G~t~sGKTt~lna 162 (312)
T COG0630 83 DATLPDGSRIQIVLGPEVSPNGSSFTIRKFSDEPITPEDLIEYGTISPEQAAYLWLAIEARKSIIICGGTASGKTTLLNA 162 (312)
T ss_pred EEECCCCEEEEEECCCCCCCCCCCEEEECCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHH
T ss_conf 87748864898840786568988668862668889989985437888889999999997699499988888864959999
Q ss_pred HHHHCCCCCCEEEEECCHHHCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHCC
Q ss_conf 98303876767999642131256787567787416666530001899998752059988996575879999999998739
Q gi|254780724|r 270 LTRYIDKDERIVTCEDTAELQLQQPHVVRLETRPPNIEGEGEITMRDLVKNCLRMRPERIILGEVRGPEVLDLLQAMNTG 349 (483)
Q Consensus 270 l~~~i~~~~rivtIED~~El~l~~~~~v~~~~~~~~~e~~~~~t~~~ll~~aLR~~PD~IiVGEiRg~Ea~~~l~A~~TG 349 (483)
T Consensus 163 ll~~Ip~~~rivtIEdt~E~~~~~~n~~~l~~r~~~~~-~~~v~~~dll~aalR~rPd~IivgEvrg~e~~~~~~a~~tG 241 (312)
T COG0630 163 LLDFIPPEERIVTIEDTPELKLPHENWVQLVTREGESG-SSEVSLEDLLRAALRQRPDYIIVGELRGREAFVLFQAMQTG 241 (312)
T ss_pred HHHHCCCCCCEEEECCCCEECCCCCCEEEEEECCCCCC-CCCCCHHHHHHHHHCCCCCEEEEEEEECHHHHHHHHHHHCC
T ss_conf 98637852218995255541478876589983257776-56666999999986239986999633337799999998659
Q ss_pred CCEEEHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCEEEEEEEC-CCCCEEEEEEEEEEEEE
Q ss_conf 70102000478888899999975530467999899999997423588999876-99987899999998414
Q gi|254780724|r 350 HDGSMGTIHANNARESFGRMEAMIAMGGFTLPSQMVREIITSSLDVIVQTQRL-RDGSRRITNICEIVGME 419 (483)
Q Consensus 350 H~G~ltTlHa~s~~~ai~RL~~m~~~~~~~~~~~~~~~~ia~avd~iV~~~r~-~dG~Rrv~~I~Ev~g~e 419 (483)
T Consensus 242 h-~~isT~ha~s~~~~~~rl~~~~~~----~p~~~~-----~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~ 302 (312)
T COG0630 242 H-GTISTIHADSPELVLDRLTELPLN----VPKEML-----LKLDVIIEQYADRVDVLRRVSRIAEIVGGR 302 (312)
T ss_pred C-CCEEEEECCCHHHHHHHHHHCCCC----CCHHHH-----CCHHHHHHHHHHHCEEEEEEEEEEEECCCC
T ss_conf 9-821688068999999998753447----962341-----237789987750110589988862222410