HHsearch alignment for GI: 254780724 and conserved domain: COG1066
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones].
Probab=97.71 E-value=0.0021 Score=42.37 Aligned_cols=142 Identities=20% Similarity=0.320 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEE--ECCHH--------HCCCCCCEEEEEEECCCC
Q ss_conf 89999989862258848998188888889999998303876767999--64213--------125678756778741666
Q gi|254780724|r 237 AEGARLLQIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTC--EDTAE--------LQLQQPHVVRLETRPPNI 306 (483)
Q Consensus 237 ~~~~~~l~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtI--ED~~E--------l~l~~~~~v~~~~~~~~~ 306 (483)
T Consensus 80 ~EldRVLGGG~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~~vLYVsGEES~~QiklRA~RL~~~~~~l~-l------- 151 (456)
T COG1066 80 EELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGKVLYVSGEESLQQIKLRADRLGLPTNNLY-L------- 151 (456)
T ss_pred HHHHHHHCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHCCCCCCEE-E-------
T ss_conf 88876536772366179973689877989999999998705957999677678999999998289964557-7-------
Q ss_pred CCCCCCHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHCCCCEEEHHHCCCC----------HHHHHHHHHHHHHHC
Q ss_conf 6530001899998752059988996575879999999998739701020004788----------888999999755304
Q gi|254780724|r 307 EGEGEITMRDLVKNCLRMRPERIILGEVRGPEVLDLLQAMNTGHDGSMGTIHANN----------ARESFGRMEAMIAMG 376 (483)
Q Consensus 307 e~~~~~t~~~ll~~aLR~~PD~IiVGEiRg~Ea~~~l~A~~TGH~G~ltTlHa~s----------~~~ai~RL~~m~~~~ 376 (483)
T Consensus 152 --~aEt~~e~I~~~l~~~~p~lvVID--------------------SIQT~~s~~~~SapGsVsQVRe~t~~L~~~AK~~ 209 (456)
T COG1066 152 --LAETNLEDIIAELEQEKPDLVVID--------------------SIQTLYSEEITSAPGSVSQVREVAAELMRLAKTK 209 (456)
T ss_pred --EHHCCHHHHHHHHHHCCCCEEEEE--------------------CCCEECCCCCCCCCCCHHHHHHHHHHHHHHHHHC
T ss_conf --411289999999985499789996--------------------5412302633579985899999999999999875
Q ss_pred CCCCCHHHHHHHHHHHCCEEEEEEECC--CCCEEEEEEEEEEE-EECC
Q ss_conf 679998999999974235889998769--99878999999984-1498
Q gi|254780724|r 377 GFTLPSQMVREIITSSLDVIVQTQRLR--DGSRRITNICEIVG-MEGN 421 (483)
Q Consensus 377 ~~~~~~~~~~~~ia~avd~iV~~~r~~--dG~Rrv~~I~Ev~g-~e~~ 421 (483)
T Consensus 210 ~-------------i~~fiVGHVTKeG~IAGPrvLEHmVDtVlyFEGd 244 (456)
T COG1066 210 N-------------IAIFIVGHVTKEGAIAGPRVLEHMVDTVLYFEGD 244 (456)
T ss_pred C-------------CEEEEEEEECCCCCCCCCHHEEEEEEEEEEEECC
T ss_conf 9-------------7399998882466326840043653689998305