HHsearch alignment for GI: 254780724 and conserved domain: COG1855
>COG1855 ATPase (PilT family) [General function prediction only].
Probab=99.69 E-value=6.3e-15 Score=122.90 Aligned_cols=291 Identities=20% Similarity=0.315 Sum_probs=178.5
Q ss_pred HHHHHHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHH-HHHCCCC--------CHHHHCCCCCCEEEEE-CCCCEEEE-
Q ss_conf 8999999999999999741-877896789999999999-8856563--------3588588332179985-69918998-
Q gi|254780724|r 83 SQSARDEIATLMNEIVSVK-KITMSLDEQLDLFEDLCN-DILGYGP--------LQPLIARDDIADIMVN-GSNKVFIE- 150 (483)
Q Consensus 83 ~~~~~~~i~~~i~~~~~~~-~~~~~~~~~~~l~~~i~~-e~~glGp--------L~~ll~D~~VsdI~in-g~~~I~ve- 150 (483)
T Consensus 92 ~GEid~miR~v----A~e~~a~lVTsD~vQ~~va~a~Giev~yl~p~~~~~~~~ie~fFd~~TMS-vHLKeg~~P-~aK~ 165 (604)
T COG1855 92 SGEIDAMIREV----ALEYGATLVTSDRVQRDVARAKGIEVEYLEPVEEPEEVRIEEFFDEETMS-VHLKEGVPP-MAKK 165 (604)
T ss_pred CCCHHHHHHHH----HHHHCCEEEECHHHHHHHHHHCCCEEEEECCCCCHHHCCHHHHCCCCCEE-EEECCCCCC-CCCC
T ss_conf 65378999999----99839689935488888888618169995786643221087755886158-830179996-2346
Q ss_pred -ECCE--EEECCCCCCCHHHHHHHHHHHHHHHCCCCC----CCCC-EEEEEECCCCEEEEECCCCCCCCCEEEEEECCCC
Q ss_conf -2783--897176207989999999999998098124----3387-7879823762034531553578816888405765
Q gi|254780724|r 151 -VNGK--TVETGINFRDNEQLLSVCQRIVNQVGRRVD----ESSP-ICDARLLDGSRVNVIIPPLALDGPTLTIRKFKKD 222 (483)
Q Consensus 151 -~~G~--~~~~~~~f~~~~~l~~~i~rla~~~g~~i~----~~~P-~~d~~lpdg~Ri~~~~~p~s~~G~~i~IRk~~~~ 222 (483)
T Consensus 166 GkpG~~k~v~l~d~pl~~~ele~ia~eIi~~a~~~~~sfIEi~r~GatVvQlr-n~RIvIarPPfSd~-~EITavRP-vv 242 (604)
T COG1855 166 GKPGEWKLVRLSDKPLTREELEEIAREIIERAKRDPDSFIEIDRPGATVVQLR-NYRIVIARPPFSDR-WEITAVRP-VV 242 (604)
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCEEEEEC-CEEEEEECCCCCCC-EEEEEEEE-EE
T ss_conf 99984799985776688999999999999987528676489806996699843-57999945998776-28999713-69
Q ss_pred CCCHHHHHHCCCCCHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEE-EEECCHHHCCCCCCEEEEEE
Q ss_conf 46678886506998899999898622588489981888888899999983038767679-99642131256787567787
Q gi|254780724|r 223 KLTLDHLVSFGAVTAEGARLLQIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIV-TCEDTAELQLQQPHVVRLET 301 (483)
Q Consensus 223 ~~~l~~l~~~g~~~~~~~~~l~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~riv-tIED~~El~l~~~~~v~~~~ 301 (483)
T Consensus 243 k~~ledY~L----~d---kl~eRL~eraeGILIAG~PGaGKsTFaqAlAefy~~~GkiVKTmEsPRDl~v~~e-I----T 310 (604)
T COG1855 243 KLSLEDYGL----SD---KLKERLEERAEGILIAGAPGAGKSTFAQALAEFYASQGKIVKTMESPRDLQVSPE-I----T 310 (604)
T ss_pred EEEHHHCCC----CH---HHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCHH-H----H
T ss_conf 960554287----98---9999988641646995699997468999999999866968863247513568866-6----3
Q ss_pred ECCCCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHH-HHCCCCEEEHHHCCCCHHHHHHHHHHHHHHCCCCC
Q ss_conf 41666653000189999875205998899657587999999999-87397010200047888889999997553046799
Q gi|254780724|r 302 RPPNIEGEGEITMRDLVKNCLRMRPERIILGEVRGPEVLDLLQA-MNTGHDGSMGTIHANNARESFGRMEAMIAMGGFTL 380 (483)
Q Consensus 302 ~~~~~e~~~~~t~~~ll~~aLR~~PD~IiVGEiRg~Ea~~~l~A-~~TGH~G~ltTlHa~s~~~ai~RL~~m~~~~~~~~ 380 (483)
T Consensus 311 QYs~l~g~----me~t~DiLLLvRPDYTIyDEmR~t~DF~vyaDmRLAG-VGMVGVVHATrpIDAiQR~igRVELG~--- 382 (604)
T COG1855 311 QYSPLEGD----MEKTADILLLVRPDYTIYDEMRKTEDFQVYADLRLAG-VGMVGVVHATRPIDAIQRFIGRVELGM--- 382 (604)
T ss_pred HCCCCCCC----HHHHCCEEEEECCCCEEHHHHHCCCCEEEEEEEECCC-CCEEEEEECCCHHHHHHHHHCCEEECC---
T ss_conf 20644564----5552337999658845103341566616766500115-754768961780589998644063146---
Q ss_pred CHHHHHHHHHHHCCEEEEEEECCCCC-EEEEEEE
Q ss_conf 98999999974235889998769998-7899999
Q gi|254780724|r 381 PSQMVREIITSSLDVIVQTQRLRDGS-RRITNIC 413 (483)
Q Consensus 381 ~~~~~~~~ia~avd~iV~~~r~~dG~-Rrv~~I~ 413 (483)
T Consensus 383 --------IPqIvDTVIfI~---~G~V~kVy~ls 405 (604)
T COG1855 383 --------IPQIVDTVIFIK---DGEVAKVYELS 405 (604)
T ss_pred --------CCCCEEEEEEEE---CCEEEEEEEEE
T ss_conf --------641226899981---88188999999