HHsearch alignment for GI: 254780724 and conserved domain: COG1855

>COG1855 ATPase (PilT family) [General function prediction only].
Probab=99.69  E-value=6.3e-15  Score=122.90  Aligned_cols=291  Identities=20%  Similarity=0.315  Sum_probs=178.5

Q ss_pred             HHHHHHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHH-HHHCCCC--------CHHHHCCCCCCEEEEE-CCCCEEEE-
Q ss_conf             8999999999999999741-877896789999999999-8856563--------3588588332179985-69918998-
Q gi|254780724|r   83 SQSARDEIATLMNEIVSVK-KITMSLDEQLDLFEDLCN-DILGYGP--------LQPLIARDDIADIMVN-GSNKVFIE-  150 (483)
Q Consensus        83 ~~~~~~~i~~~i~~~~~~~-~~~~~~~~~~~l~~~i~~-e~~glGp--------L~~ll~D~~VsdI~in-g~~~I~ve-  150 (483)
T Consensus        92 ~GEid~miR~v----A~e~~a~lVTsD~vQ~~va~a~Giev~yl~p~~~~~~~~ie~fFd~~TMS-vHLKeg~~P-~aK~  165 (604)
T COG1855          92 SGEIDAMIREV----ALEYGATLVTSDRVQRDVARAKGIEVEYLEPVEEPEEVRIEEFFDEETMS-VHLKEGVPP-MAKK  165 (604)
T ss_pred             CCCHHHHHHHH----HHHHCCEEEECHHHHHHHHHHCCCEEEEECCCCCHHHCCHHHHCCCCCEE-EEECCCCCC-CCCC
T ss_conf             65378999999----99839689935488888888618169995786643221087755886158-830179996-2346


Q ss_pred             -ECCE--EEECCCCCCCHHHHHHHHHHHHHHHCCCCC----CCCC-EEEEEECCCCEEEEECCCCCCCCCEEEEEECCCC
Q ss_conf             -2783--897176207989999999999998098124----3387-7879823762034531553578816888405765
Q gi|254780724|r  151 -VNGK--TVETGINFRDNEQLLSVCQRIVNQVGRRVD----ESSP-ICDARLLDGSRVNVIIPPLALDGPTLTIRKFKKD  222 (483)
Q Consensus       151 -~~G~--~~~~~~~f~~~~~l~~~i~rla~~~g~~i~----~~~P-~~d~~lpdg~Ri~~~~~p~s~~G~~i~IRk~~~~  222 (483)
T Consensus       166 GkpG~~k~v~l~d~pl~~~ele~ia~eIi~~a~~~~~sfIEi~r~GatVvQlr-n~RIvIarPPfSd~-~EITavRP-vv  242 (604)
T COG1855         166 GKPGEWKLVRLSDKPLTREELEEIAREIIERAKRDPDSFIEIDRPGATVVQLR-NYRIVIARPPFSDR-WEITAVRP-VV  242 (604)
T ss_pred             CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCEEEEEC-CEEEEEECCCCCCC-EEEEEEEE-EE
T ss_conf             99984799985776688999999999999987528676489806996699843-57999945998776-28999713-69


Q ss_pred             CCCHHHHHHCCCCCHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEE-EEECCHHHCCCCCCEEEEEE
Q ss_conf             46678886506998899999898622588489981888888899999983038767679-99642131256787567787
Q gi|254780724|r  223 KLTLDHLVSFGAVTAEGARLLQIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIV-TCEDTAELQLQQPHVVRLET  301 (483)
Q Consensus       223 ~~~l~~l~~~g~~~~~~~~~l~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~riv-tIED~~El~l~~~~~v~~~~  301 (483)
T Consensus       243 k~~ledY~L----~d---kl~eRL~eraeGILIAG~PGaGKsTFaqAlAefy~~~GkiVKTmEsPRDl~v~~e-I----T  310 (604)
T COG1855         243 KLSLEDYGL----SD---KLKERLEERAEGILIAGAPGAGKSTFAQALAEFYASQGKIVKTMESPRDLQVSPE-I----T  310 (604)
T ss_pred             EEEHHHCCC----CH---HHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCHH-H----H
T ss_conf             960554287----98---9999988641646995699997468999999999866968863247513568866-6----3


Q ss_pred             ECCCCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHH-HHCCCCEEEHHHCCCCHHHHHHHHHHHHHHCCCCC
Q ss_conf             41666653000189999875205998899657587999999999-87397010200047888889999997553046799
Q gi|254780724|r  302 RPPNIEGEGEITMRDLVKNCLRMRPERIILGEVRGPEVLDLLQA-MNTGHDGSMGTIHANNARESFGRMEAMIAMGGFTL  380 (483)
Q Consensus       302 ~~~~~e~~~~~t~~~ll~~aLR~~PD~IiVGEiRg~Ea~~~l~A-~~TGH~G~ltTlHa~s~~~ai~RL~~m~~~~~~~~  380 (483)
T Consensus       311 QYs~l~g~----me~t~DiLLLvRPDYTIyDEmR~t~DF~vyaDmRLAG-VGMVGVVHATrpIDAiQR~igRVELG~---  382 (604)
T COG1855         311 QYSPLEGD----MEKTADILLLVRPDYTIYDEMRKTEDFQVYADLRLAG-VGMVGVVHATRPIDAIQRFIGRVELGM---  382 (604)
T ss_pred             HCCCCCCC----HHHHCCEEEEECCCCEEHHHHHCCCCEEEEEEEECCC-CCEEEEEECCCHHHHHHHHHCCEEECC---
T ss_conf             20644564----5552337999658845103341566616766500115-754768961780589998644063146---


Q ss_pred             CHHHHHHHHHHHCCEEEEEEECCCCC-EEEEEEE
Q ss_conf             98999999974235889998769998-7899999
Q gi|254780724|r  381 PSQMVREIITSSLDVIVQTQRLRDGS-RRITNIC  413 (483)
Q Consensus       381 ~~~~~~~~ia~avd~iV~~~r~~dG~-Rrv~~I~  413 (483)
T Consensus       383 --------IPqIvDTVIfI~---~G~V~kVy~ls  405 (604)
T COG1855         383 --------IPQIVDTVIFIK---DGEVAKVYELS  405 (604)
T ss_pred             --------CCCCEEEEEEEE---CCEEEEEEEEE
T ss_conf             --------641226899981---88188999999