HHsearch alignment for GI: 254780724 and conserved domain: PRK01297
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional.
Probab=95.33 E-value=0.045 Score=33.14 Aligned_cols=121 Identities=15% Similarity=0.191 Sum_probs=49.2
Q ss_pred HHHHCCCCCHHHHHHHHHHHC-CCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEECCHHHCCCCCCEEEEEEECCCC
Q ss_conf 886506998899999898622-5884899818888888999999830387676799964213125678756778741666
Q gi|254780724|r 228 HLVSFGAVTAEGARLLQIIGR-IRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCEDTAELQLQQPHVVRLETRPPNI 306 (483)
Q Consensus 228 ~l~~~g~~~~~~~~~l~~~v~-~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED~~El~l~~~~~v~~~~~~~~~ 306 (483)
T Consensus 245 ~LLd~gf~-~~v~~Il~~~p~~~~rQ~~lfSATl~~~v~~l~~--~~~-~~p~~v~i~~~~~---~~~~v~q~~~~~~-- 315 (472)
T PRK01297 245 RMLDMGFI-PQVRQIIRQTPRKEERQTLLFSATFTDDVMNLAK--QWT-TDPAIVEIEPENV---ASDTVEQHVYAVA-- 315 (472)
T ss_pred HHHCCCCH-HHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHH--HHC-CCCEEEEECCCCC---CCCCEEEEEEECC--
T ss_conf 21025759-9999999968985571699985257789999999--977-9988999657766---7776028999818--
Q ss_pred CCCCCCHHHHHHHHHHHCCC-CEE-EE-CCCCCHHH-HHHHHHHHCCCCEEEHHHCCCCHHHH
Q ss_conf 65300018999987520599-889-96-57587999-99999987397010200047888889
Q gi|254780724|r 307 EGEGEITMRDLVKNCLRMRP-ERI-IL-GEVRGPEV-LDLLQAMNTGHDGSMGTIHANNARES 365 (483)
Q Consensus 307 e~~~~~t~~~ll~~aLR~~P-D~I-iV-GEiRg~Ea-~~~l~A~~TGH~G~ltTlHa~s~~~a 365 (483)
T Consensus 316 -~---~dk~~~L~~ll~~~~~~k~IIF~nt~~~~~~l~~~L~--~~g~--~~~~lhg~l~q~~ 370 (472)
T PRK01297 316 -G---SDKYKLLYNLVTQNPWERVMVFANRKDEVRRIEERLV--KDGI--NAAQLSGDVPQHK 370 (472)
T ss_pred -H---HHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHH--HCCC--CEEEEECCCCHHH
T ss_conf -8---8999999999984798736896174999999998765--4496--1686437789999