HHsearch alignment for GI: 254780724 and conserved domain: PRK06893
>PRK06893 DNA replication initiation factor; Validated.
Probab=96.32 E-value=0.092 Score=30.94 Aligned_cols=159 Identities=19% Similarity=0.248 Sum_probs=70.5
Q ss_pred CCCCCHHHHHHCCCCCHHHHHHHHH--HHCCCCCEEEECCCCCCHHHHHHHHHHH-CCCCCCEEEE--ECCHHHC-----
Q ss_conf 6546678886506998899999898--6225884899818888888999999830-3876767999--6421312-----
Q gi|254780724|r 221 KDKLTLDHLVSFGAVTAEGARLLQI--IGRIRCNVLISGGTGSGKTTLLNCLTRY-IDKDERIVTC--EDTAELQ----- 290 (483)
Q Consensus 221 ~~~~~l~~l~~~g~~~~~~~~~l~~--~v~~~~nilVsG~TGSGKTT~L~al~~~-i~~~~rivtI--ED~~El~----- 290 (483)
T Consensus 10 ~~~~tfdnF~~--~~n~~~~~~l~~~~~~~~~~~l~i~G~~gsGKTHLLqa~~~~~~~~~~~~~yi~~~~~~~~~~~~l~ 87 (229)
T PRK06893 10 IDDETLDNFYS--DNNLLLLDSLRKNFIDLKQPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQYFSPAVLE 87 (229)
T ss_pred CCCCCHHCCCC--CCHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEHHHHHHCCHHHHH
T ss_conf 98665431546--8749999999975502469879998999998899999999999971898599973775640699998
Q ss_pred -CCCCCEEEEEEECCCCCCC--CCCHHHHHHHHHHHCCCCE-EEECCCCCHHH-----HHHHHHHHCCCCEEEHHHCCCC
Q ss_conf -5678756778741666653--0001899998752059988-99657587999-----9999998739701020004788
Q gi|254780724|r 291 -LQQPHVVRLETRPPNIEGE--GEITMRDLVKNCLRMRPER-IILGEVRGPEV-----LDLLQAMNTGHDGSMGTIHANN 361 (483)
Q Consensus 291 -l~~~~~v~~~~~~~~~e~~--~~~t~~~ll~~aLR~~PD~-IiVGEiRg~Ea-----~~~l~A~~TGH~G~ltTlHa~s 361 (483)
T Consensus 88 ~l~~~d~l~iDD-i~~i~g~~~~e~~lF~l~-N~l~~~~~~~ll~ss~~~p~~l~~~l~DL~SRl~~~---~~~~i~~~d 162 (229)
T PRK06893 88 NLEQQDLVCLDD-LQAVIGNEEWELAIFDLF-NRIKESGKTLLLISANQSPHALQIKLPDLASRLTWG---EIYQLNDLT 162 (229)
T ss_pred HHHHCCEEEEEC-HHHHCCCHHHHHHHHHHH-HHHHHCCCCEEEEECCCCHHHHCCHHHHHHHHHHCC---EEEEECCCC
T ss_conf 765479799967-234248838999999999-999975991799857988332210026799999688---369966777
Q ss_pred HHHHHHHHHHHHHHCCCCCCHHHHH
Q ss_conf 8889999997553046799989999
Q gi|254780724|r 362 ARESFGRMEAMIAMGGFTLPSQMVR 386 (483)
Q Consensus 362 ~~~ai~RL~~m~~~~~~~~~~~~~~ 386 (483)
T Consensus 163 d~~~~~iL~~~a~~rgl~l~~~v~~ 187 (229)
T PRK06893 163 DEQKIEVLQRNAYQRGIELSDETAN 187 (229)
T ss_pred HHHHHHHHHHHHHHCCCCCCHHHHH
T ss_conf 5799999999999649999989999