HHsearch alignment for GI: 254780724 and conserved domain: PRK06893

>PRK06893 DNA replication initiation factor; Validated.
Probab=96.32  E-value=0.092  Score=30.94  Aligned_cols=159  Identities=19%  Similarity=0.248  Sum_probs=70.5

Q ss_pred             CCCCCHHHHHHCCCCCHHHHHHHHH--HHCCCCCEEEECCCCCCHHHHHHHHHHH-CCCCCCEEEE--ECCHHHC-----
Q ss_conf             6546678886506998899999898--6225884899818888888999999830-3876767999--6421312-----
Q gi|254780724|r  221 KDKLTLDHLVSFGAVTAEGARLLQI--IGRIRCNVLISGGTGSGKTTLLNCLTRY-IDKDERIVTC--EDTAELQ-----  290 (483)
Q Consensus       221 ~~~~~l~~l~~~g~~~~~~~~~l~~--~v~~~~nilVsG~TGSGKTT~L~al~~~-i~~~~rivtI--ED~~El~-----  290 (483)
T Consensus        10 ~~~~tfdnF~~--~~n~~~~~~l~~~~~~~~~~~l~i~G~~gsGKTHLLqa~~~~~~~~~~~~~yi~~~~~~~~~~~~l~   87 (229)
T PRK06893         10 IDDETLDNFYS--DNNLLLLDSLRKNFIDLKQPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQYFSPAVLE   87 (229)
T ss_pred             CCCCCHHCCCC--CCHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEHHHHHHCCHHHHH
T ss_conf             98665431546--8749999999975502469879998999998899999999999971898599973775640699998


Q ss_pred             -CCCCCEEEEEEECCCCCCC--CCCHHHHHHHHHHHCCCCE-EEECCCCCHHH-----HHHHHHHHCCCCEEEHHHCCCC
Q ss_conf             -5678756778741666653--0001899998752059988-99657587999-----9999998739701020004788
Q gi|254780724|r  291 -LQQPHVVRLETRPPNIEGE--GEITMRDLVKNCLRMRPER-IILGEVRGPEV-----LDLLQAMNTGHDGSMGTIHANN  361 (483)
Q Consensus       291 -l~~~~~v~~~~~~~~~e~~--~~~t~~~ll~~aLR~~PD~-IiVGEiRg~Ea-----~~~l~A~~TGH~G~ltTlHa~s  361 (483)
T Consensus        88 ~l~~~d~l~iDD-i~~i~g~~~~e~~lF~l~-N~l~~~~~~~ll~ss~~~p~~l~~~l~DL~SRl~~~---~~~~i~~~d  162 (229)
T PRK06893         88 NLEQQDLVCLDD-LQAVIGNEEWELAIFDLF-NRIKESGKTLLLISANQSPHALQIKLPDLASRLTWG---EIYQLNDLT  162 (229)
T ss_pred             HHHHCCEEEEEC-HHHHCCCHHHHHHHHHHH-HHHHHCCCCEEEEECCCCHHHHCCHHHHHHHHHHCC---EEEEECCCC
T ss_conf             765479799967-234248838999999999-999975991799857988332210026799999688---369966777


Q ss_pred             HHHHHHHHHHHHHHCCCCCCHHHHH
Q ss_conf             8889999997553046799989999
Q gi|254780724|r  362 ARESFGRMEAMIAMGGFTLPSQMVR  386 (483)
Q Consensus       362 ~~~ai~RL~~m~~~~~~~~~~~~~~  386 (483)
T Consensus       163 d~~~~~iL~~~a~~rgl~l~~~v~~  187 (229)
T PRK06893        163 DEQKIEVLQRNAYQRGIELSDETAN  187 (229)
T ss_pred             HHHHHHHHHHHHHHCCCCCCHHHHH
T ss_conf             5799999999999649999989999