HHsearch alignment for GI: 254780724 and conserved domain: PRK08181

>PRK08181 transposase; Validated.
Probab=95.45  E-value=0.021  Score=35.40  Aligned_cols=106  Identities=20%  Similarity=0.289  Sum_probs=65.2

Q ss_pred             HHCCCCCEEEECCCCCCHHHHHHHHHH-HCCCCCCEEEEE--CCHH-HCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHH
Q ss_conf             622588489981888888899999983-038767679996--4213-125678756778741666653000189999875
Q gi|254780724|r  246 IGRIRCNVLISGGTGSGKTTLLNCLTR-YIDKDERIVTCE--DTAE-LQLQQPHVVRLETRPPNIEGEGEITMRDLVKNC  321 (483)
Q Consensus       246 ~v~~~~nilVsG~TGSGKTT~L~al~~-~i~~~~rivtIE--D~~E-l~l~~~~~v~~~~~~~~~e~~~~~t~~~ll~~a  321 (483)
T Consensus       102 fi~~~~Nvil~Gp~GtGKThLA~Alg~~A~~~G~~V~f~~~~~L~~~L~~a----------------~~~~~~~~~~~~l  165 (269)
T PRK08181        102 WLAKGANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVA----------------RRELQLESAIAKL  165 (269)
T ss_pred             HHHCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHH----------------HHCCCHHHHHHHH
T ss_conf             886487089989999878899999999999879939997899999999997----------------7558399999997


Q ss_pred             HHCCCCEEEECCCC----CH-HHHHHHHHHHCCCCEEEHH-HCCCCHHHHHHHHH
Q ss_conf             20599889965758----79-9999999987397010200-04788888999999
Q gi|254780724|r  322 LRMRPERIILGEVR----GP-EVLDLLQAMNTGHDGSMGT-IHANNARESFGRME  370 (483)
Q Consensus       322 LR~~PD~IiVGEiR----g~-Ea~~~l~A~~TGH~G~ltT-lHa~s~~~ai~RL~  370 (483)
T Consensus       166 --~~~dLLIiDe~G~~~~~~~~~~~lf~lI~~Rye-~~S~IITSn~~~~~W~~~f  217 (269)
T PRK08181        166 --DKFDLLILDDLAYVTKDQAETSVLFELISARYE-RRSILITANQPFGEWNRVF  217 (269)
T ss_pred             --HCCCEEEEHHCCCCCCCHHHHHHHHHHHHHHHC-CCCEEEECCCCHHHHHHHC
T ss_conf             --444601220105667998999999999999857-8888998899977887753