HHsearch alignment for GI: 254780724 and conserved domain: PRK08181
>PRK08181 transposase; Validated.
Probab=95.45 E-value=0.021 Score=35.40 Aligned_cols=106 Identities=20% Similarity=0.289 Sum_probs=65.2
Q ss_pred HHCCCCCEEEECCCCCCHHHHHHHHHH-HCCCCCCEEEEE--CCHH-HCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHH
Q ss_conf 622588489981888888899999983-038767679996--4213-125678756778741666653000189999875
Q gi|254780724|r 246 IGRIRCNVLISGGTGSGKTTLLNCLTR-YIDKDERIVTCE--DTAE-LQLQQPHVVRLETRPPNIEGEGEITMRDLVKNC 321 (483)
Q Consensus 246 ~v~~~~nilVsG~TGSGKTT~L~al~~-~i~~~~rivtIE--D~~E-l~l~~~~~v~~~~~~~~~e~~~~~t~~~ll~~a 321 (483)
T Consensus 102 fi~~~~Nvil~Gp~GtGKThLA~Alg~~A~~~G~~V~f~~~~~L~~~L~~a----------------~~~~~~~~~~~~l 165 (269)
T PRK08181 102 WLAKGANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVA----------------RRELQLESAIAKL 165 (269)
T ss_pred HHHCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHH----------------HHCCCHHHHHHHH
T ss_conf 886487089989999878899999999999879939997899999999997----------------7558399999997
Q ss_pred HHCCCCEEEECCCC----CH-HHHHHHHHHHCCCCEEEHH-HCCCCHHHHHHHHH
Q ss_conf 20599889965758----79-9999999987397010200-04788888999999
Q gi|254780724|r 322 LRMRPERIILGEVR----GP-EVLDLLQAMNTGHDGSMGT-IHANNARESFGRME 370 (483)
Q Consensus 322 LR~~PD~IiVGEiR----g~-Ea~~~l~A~~TGH~G~ltT-lHa~s~~~ai~RL~ 370 (483)
T Consensus 166 --~~~dLLIiDe~G~~~~~~~~~~~lf~lI~~Rye-~~S~IITSn~~~~~W~~~f 217 (269)
T PRK08181 166 --DKFDLLILDDLAYVTKDQAETSVLFELISARYE-RRSILITANQPFGEWNRVF 217 (269)
T ss_pred --HCCCEEEEHHCCCCCCCHHHHHHHHHHHHHHHC-CCCEEEECCCCHHHHHHHC
T ss_conf --444601220105667998999999999999857-8888998899977887753