HHsearch alignment for GI: 254780724 and conserved domain: PRK09302
>PRK09302 circadian clock protein KaiC; Reviewed.
Probab=97.80 E-value=0.0012 Score=44.01 Aligned_cols=212 Identities=17% Similarity=0.266 Sum_probs=98.3
Q ss_pred HHHHHHHCCCCCEEEECCCCCCHHHHHHH-HHHHCCCCCCEE--EEECCHHHCCC-------------CCCEEEEEEECC
Q ss_conf 99898622588489981888888899999-983038767679--99642131256-------------787567787416
Q gi|254780724|r 241 RLLQIIGRIRCNVLISGGTGSGKTTLLNC-LTRYIDKDERIV--TCEDTAELQLQ-------------QPHVVRLETRPP 304 (483)
Q Consensus 241 ~~l~~~v~~~~nilVsG~TGSGKTT~L~a-l~~~i~~~~riv--tIED~~El~l~-------------~~~~v~~~~~~~ 304 (483)
T Consensus 257 ~llgGGl~~GsstLi~Gp~GtGKTtla~qFl~~~a~~GE~~l~~~FeE~~~~l~~~a~~~G~dl~~~~~~G~l~i~~~~p 336 (501)
T PRK09302 257 EMCGGGFFRGSIILVSGATGTGKTLLVSKFAEAACRRGERCLLFAFEESRAQLVRNATSWGIDLEEMERKGLLKIICARP 336 (501)
T ss_pred HHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHCCCCHHHHHHCCCEEEEEECC
T ss_conf 87259975894699988999888999999999998659908999996799999999997399848887489479998370
Q ss_pred CCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCH-------HHHHH---HHHHHCCCCEEEHHHCCCCHHHHHHHHHHHHH
Q ss_conf 666530001899998752059988996575879-------99999---99987397010200047888889999997553
Q gi|254780724|r 305 NIEGEGEITMRDLVKNCLRMRPERIILGEVRGP-------EVLDL---LQAMNTGHDGSMGTIHANNARESFGRMEAMIA 374 (483)
Q Consensus 305 ~~e~~~~~t~~~ll~~aLR~~PD~IiVGEiRg~-------Ea~~~---l~A~~TGH~G~ltTlHa~s~~~ai~RL~~m~~ 374 (483)
T Consensus 337 ~-~~~~~e~~~~i~~~v~~~~~~rVvIDsls~~~~~~~~~~~r~~l~~L~~~Lk~-~g-vT~l~t~~~~~~-------~- 405 (501)
T PRK09302 337 E-STGLEDHLQIIKREIEEFKPSRVAVDPLSALARGGSLNEFRQFVIRLTDYLKQ-EE-ITGLFTNLTPDF-------M- 405 (501)
T ss_pred C-CCCHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHCCHHHHHHHHHHHHHHHHH-CC-CEEEEEEECCCC-------C-
T ss_conf 0-05989999999999997299899995806876526859999999999999976-89-789997612355-------6-
Q ss_pred HCCCCCCHHHHHHHHHHHCCEEEEEEECC-CCC-EEEEEEEEEEEEECCEEEEEEEEEEEEE--CCCCCCEEEE-EEEEC
Q ss_conf 04679998999999974235889998769-998-7899999998414988998678987540--6688862879-99977
Q gi|254780724|r 375 MGGFTLPSQMVREIITSSLDVIVQTQRLR-DGS-RRITNICEIVGMEGNVIITQDLLKYEVM--GEDETGKLIG-QHIST 449 (483)
Q Consensus 375 ~~~~~~~~~~~~~~ia~avd~iV~~~r~~-dG~-Rrv~~I~Ev~g~e~~~~~~~~if~~~~~--~~~~~~~~~g-~~~~~ 449 (483)
T Consensus 406 -g~~~~t~----~~iS~l~D~ii~Lry~E~~g~l~R~i~VlK~R~s~h~----~~iRe~~It~~Gi~vg~p~~~~~Gilt 476 (501)
T PRK09302 406 -GSHSITE----SHISSLTDTWILLQYVEINGEMNRALNVLKMRGSWHS----KQIREFVITDKGIHIKDPFRGFEGILS 476 (501)
T ss_pred -CCCCCCC----CCHHHHCCEEEEEEEEEECCEEEEEEEEEEECCCCCC----CCEEEEEECCCCEEECCCCCCCCCEEE
T ss_conf -7664476----6600111247899987138999898999993689657----753789987996797431447763170
Q ss_pred CCCCHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 99898899999986998369999999898
Q gi|254780724|r 450 GVSRPRFWNRAAQYGEEKNLAEVLQSLEK 478 (483)
Q Consensus 450 g~~~~~~~~~~~~~g~~~~~~~~~~~~e~ 478 (483)
T Consensus 477 G~--p~~~~~~~~----~~~~~~~~~~~~ 499 (501)
T PRK09302 477 GS--PRRAQEAEE----SRLSRRFEEVER 499 (501)
T ss_pred CC--CCCCCCCHH----HHHHHHHHHHHH
T ss_conf 67--710442646----699998877761