HHsearch alignment for GI: 254780724 and conserved domain: PRK11537
>PRK11537 putative GTP-binding protein YjiA; Provisional.
Probab=97.21 E-value=0.00074 Score=45.56 Aligned_cols=108 Identities=25% Similarity=0.323 Sum_probs=57.2
Q ss_pred CEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEC-CHHHCCCCCC-------EEEEE---EECCCCCCCCCCHHHHHHHH
Q ss_conf 4899818888888999999830387676799964-2131256787-------56778---74166665300018999987
Q gi|254780724|r 252 NVLISGGTGSGKTTLLNCLTRYIDKDERIVTCED-TAELQLQQPH-------VVRLE---TRPPNIEGEGEITMRDLVKN 320 (483)
Q Consensus 252 nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED-~~El~l~~~~-------~v~~~---~~~~~~e~~~~~t~~~ll~~ 320 (483)
T Consensus 6 VtiltGFLGaGKTTlL~~lL~~-~~~~riaVivNEfGev~iD~~li~~~~~~v~eL~nGCiCCs-~~~dl~~~l~~l~~~ 83 (317)
T PRK11537 6 VTLLTGFLGAGKTTLLRHILNE-QHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCS-RSNELEDALLDLLDN 83 (317)
T ss_pred EEEEEECCCCCHHHHHHHHHHC-CCCCCEEEEEECCCCCCCHHHHHHCCCCCEEEECCCCEEEE-ECCHHHHHHHHHHHH
T ss_conf 8998308888999999999727-78997899983761453329887356532688447736873-052289999999986
Q ss_pred HHHC--CCCEEEECCCCCH-HHHHHHHHHHC-----CC---CEEEHHHCCCCH
Q ss_conf 5205--9988996575879-99999999873-----97---010200047888
Q gi|254780724|r 321 CLRM--RPERIILGEVRGP-EVLDLLQAMNT-----GH---DGSMGTIHANNA 362 (483)
Q Consensus 321 aLR~--~PD~IiVGEiRg~-Ea~~~l~A~~T-----GH---~G~ltTlHa~s~ 362 (483)
T Consensus 84 ~~~~~~~~D~IiI-EtsGlAdP~~I~~~~~~~~~l~~~~~Ld~vVtvVDa~~~ 135 (317)
T PRK11537 84 LDRGNIQFDRLVI-ECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHA 135 (317)
T ss_pred HHCCCCCCCEEEE-ECCCCCCHHHHHHHHHHHHHHHHHEECCCEEEEEEHHHH
T ss_conf 6435777547999-625778839999998612565653203655999866555