HHsearch alignment for GI: 254780724 and conserved domain: PRK11629
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional.
Probab=96.96 E-value=0.0011 Score=44.31 Aligned_cols=42 Identities=26% Similarity=0.185 Sum_probs=35.5
Q ss_pred HHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEC
Q ss_conf 986225884899818888888999999830387676799964
Q gi|254780724|r 244 QIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCED 285 (483)
Q Consensus 244 ~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED 285 (483)
T Consensus 29 s~~i~~GE~v~iiG~sGsGKSTLl~~i~Gl~~p~~G~I~~~g 70 (233)
T PRK11629 29 SFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNG 70 (233)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECC
T ss_conf 899889989999999994099999999669999863999999