HHsearch alignment for GI: 254780724 and conserved domain: PRK12402

>PRK12402 replication factor C small subunit 2; Reviewed.
Probab=97.79  E-value=0.0011  Score=44.41  Aligned_cols=160  Identities=14%  Similarity=0.174  Sum_probs=82.1

Q ss_pred             CCCHHHHHHCCCCCHHHHHHHHHHHCCC--CCEEEECCCCCCHHHHHHHHHHHCCCC---CCEEEEECCHHHCCCCCCEE
Q ss_conf             4667888650699889999989862258--848998188888889999998303876---76799964213125678756
Q gi|254780724|r  223 KLTLDHLVSFGAVTAEGARLLQIIGRIR--CNVLISGGTGSGKTTLLNCLTRYIDKD---ERIVTCEDTAELQLQQPHVV  297 (483)
Q Consensus       223 ~~~l~~l~~~g~~~~~~~~~l~~~v~~~--~nilVsG~TGSGKTT~L~al~~~i~~~---~rivtIED~~El~l~~~~~v  297 (483)
T Consensus        11 P~~~~dvvGq----~~i~~~L~~~~~~~~~phlLf~GPpG~GKTt~A~~lA~~l~~~~~~~~~~~~nas-d~~~~~~~~i   85 (337)
T PRK12402         11 PSLFEDILGQ----ESVVDHLSALAASGNLPHLVVYGPSGSGKTAAVRALARELYGDPWENNFTYFNVS-DFFDQGKKYL   85 (337)
T ss_pred             CCCHHHHCCC----HHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCEECCC-CCCCCCCCEE
T ss_conf             8979980397----9999999999977998769888929848999999999996799756783331165-3113564001


Q ss_pred             -------EEEEECCCCCCCCCCHHHHHHHHHHHCCC-----CEEEECCCCC--HHHHHH-HHHHHC--CCC-EEEHH---
Q ss_conf             -------77874166665300018999987520599-----8899657587--999999-999873--970-10200---
Q gi|254780724|r  298 -------RLETRPPNIEGEGEITMRDLVKNCLRMRP-----ERIILGEVRG--PEVLDL-LQAMNT--GHD-GSMGT---  356 (483)
Q Consensus       298 -------~~~~~~~~~e~~~~~t~~~ll~~aLR~~P-----D~IiVGEiRg--~Ea~~~-l~A~~T--GH~-G~ltT---  356 (483)
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~d~i~~ii~~~a~~~p~~~~~KiiIlDEad~lt~~Aq~aLlk~lEe~~~~~~fIl~t~~~  165 (337)
T PRK12402         86 VEDPRFAHFYDDPKRKYKSVIDNFKHILKEYASMRPLSADYKLILFDNAEALREDAQQALRRIMERYSETCRFIFSTTQP  165 (337)
T ss_pred             ECCCCHHHHHCCHHHCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCC
T ss_conf             01664234420153327737899999999986148877880499970713179999999998874088766998723864


Q ss_pred             ---------------HCCCCHHHHHHHHHHHHHHCCCCCCHHHHHH
Q ss_conf             ---------------0478888899999975530467999899999
Q gi|254780724|r  357 ---------------IHANNARESFGRMEAMIAMGGFTLPSQMVRE  387 (483)
Q Consensus       357 ---------------lHa~s~~~ai~RL~~m~~~~~~~~~~~~~~~  387 (483)
T Consensus       166 ~~ii~tI~SRC~~i~F~~~s~~~i~~~L~~I~~~E~i~~~~~~l~~  211 (337)
T PRK12402        166 SKLIPPIRSRCLPLFFRPVPDDEIRSVLESIAAAEGVEISDDGLDL  211 (337)
T ss_pred             CCCCHHHHHHCEEEECCCCCHHHHHHHHHHHHHHCCCCCCHHHHHH
T ss_conf             4475247762445435898999999999999998499989999999