HHsearch alignment for GI: 254780724 and conserved domain: PRK12402
>PRK12402 replication factor C small subunit 2; Reviewed.
Probab=97.79 E-value=0.0011 Score=44.41 Aligned_cols=160 Identities=14% Similarity=0.174 Sum_probs=82.1
Q ss_pred CCCHHHHHHCCCCCHHHHHHHHHHHCCC--CCEEEECCCCCCHHHHHHHHHHHCCCC---CCEEEEECCHHHCCCCCCEE
Q ss_conf 4667888650699889999989862258--848998188888889999998303876---76799964213125678756
Q gi|254780724|r 223 KLTLDHLVSFGAVTAEGARLLQIIGRIR--CNVLISGGTGSGKTTLLNCLTRYIDKD---ERIVTCEDTAELQLQQPHVV 297 (483)
Q Consensus 223 ~~~l~~l~~~g~~~~~~~~~l~~~v~~~--~nilVsG~TGSGKTT~L~al~~~i~~~---~rivtIED~~El~l~~~~~v 297 (483)
T Consensus 11 P~~~~dvvGq----~~i~~~L~~~~~~~~~phlLf~GPpG~GKTt~A~~lA~~l~~~~~~~~~~~~nas-d~~~~~~~~i 85 (337)
T PRK12402 11 PSLFEDILGQ----ESVVDHLSALAASGNLPHLVVYGPSGSGKTAAVRALARELYGDPWENNFTYFNVS-DFFDQGKKYL 85 (337)
T ss_pred CCCHHHHCCC----HHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCEECCC-CCCCCCCCEE
T ss_conf 8979980397----9999999999977998769888929848999999999996799756783331165-3113564001
Q ss_pred -------EEEEECCCCCCCCCCHHHHHHHHHHHCCC-----CEEEECCCCC--HHHHHH-HHHHHC--CCC-EEEHH---
Q ss_conf -------77874166665300018999987520599-----8899657587--999999-999873--970-10200---
Q gi|254780724|r 298 -------RLETRPPNIEGEGEITMRDLVKNCLRMRP-----ERIILGEVRG--PEVLDL-LQAMNT--GHD-GSMGT--- 356 (483)
Q Consensus 298 -------~~~~~~~~~e~~~~~t~~~ll~~aLR~~P-----D~IiVGEiRg--~Ea~~~-l~A~~T--GH~-G~ltT--- 356 (483)
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~d~i~~ii~~~a~~~p~~~~~KiiIlDEad~lt~~Aq~aLlk~lEe~~~~~~fIl~t~~~ 165 (337)
T PRK12402 86 VEDPRFAHFYDDPKRKYKSVIDNFKHILKEYASMRPLSADYKLILFDNAEALREDAQQALRRIMERYSETCRFIFSTTQP 165 (337)
T ss_pred ECCCCHHHHHCCHHHCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCC
T ss_conf 01664234420153327737899999999986148877880499970713179999999998874088766998723864
Q ss_pred ---------------HCCCCHHHHHHHHHHHHHHCCCCCCHHHHHH
Q ss_conf ---------------0478888899999975530467999899999
Q gi|254780724|r 357 ---------------IHANNARESFGRMEAMIAMGGFTLPSQMVRE 387 (483)
Q Consensus 357 ---------------lHa~s~~~ai~RL~~m~~~~~~~~~~~~~~~ 387 (483)
T Consensus 166 ~~ii~tI~SRC~~i~F~~~s~~~i~~~L~~I~~~E~i~~~~~~l~~ 211 (337)
T PRK12402 166 SKLIPPIRSRCLPLFFRPVPDDEIRSVLESIAAAEGVEISDDGLDL 211 (337)
T ss_pred CCCCHHHHHHCEEEECCCCCHHHHHHHHHHHHHHCCCCCCHHHHHH
T ss_conf 4475247762445435898999999999999998499989999999