HHsearch alignment for GI: 254780724 and conserved domain: PRK12726
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional.
Probab=96.41 E-value=0.0017 Score=43.11 Aligned_cols=85 Identities=21% Similarity=0.169 Sum_probs=48.3
Q ss_pred HHHHCCCCCEEEECCCCCCHHHHHHHHHHHC-CCCCCEEEE-ECCHHH----CCC---CCCEEEEEEECCCCCCCCCCHH
Q ss_conf 9862258848998188888889999998303-876767999-642131----256---7875677874166665300018
Q gi|254780724|r 244 QIIGRIRCNVLISGGTGSGKTTLLNCLTRYI-DKDERIVTC-EDTAEL----QLQ---QPHVVRLETRPPNIEGEGEITM 314 (483)
Q Consensus 244 ~~~v~~~~nilVsG~TGSGKTT~L~al~~~i-~~~~rivtI-ED~~El----~l~---~~~~v~~~~~~~~~e~~~~~t~ 314 (483)
T Consensus 200 ~~~l~~g~VIaLVGvnGvGKTTTiAKLA~~l~~~gkkV~LVAaDTFRaAAiEQLk~~g~rlgVpV~~------~~dpa~l 273 (407)
T PRK12726 200 SFDLSNHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIV------ATSPAEL 273 (407)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCEEEE------ECCHHHH
T ss_conf 0230369089998999897899999999999977991799970667788999999999997964998------1888999
Q ss_pred HHHHH-HHHHCCCCEEEECCC
Q ss_conf 99998-752059988996575
Q gi|254780724|r 315 RDLVK-NCLRMRPERIILGEV 334 (483)
Q Consensus 315 ~~ll~-~aLR~~PD~IiVGEi 334 (483)
T Consensus 274 ~~av~~~a~~~~~DvVIIDTA 294 (407)
T PRK12726 274 EEAVQYMTYVNCVDHILIDTV 294 (407)
T ss_pred HHHHHHHHHCCCCCEEEEECC
T ss_conf 999999986289998999699