HHsearch alignment for GI: 254780724 and conserved domain: PRK12726

>PRK12726 flagellar biosynthesis regulator FlhF; Provisional.
Probab=96.41  E-value=0.0017  Score=43.11  Aligned_cols=85  Identities=21%  Similarity=0.169  Sum_probs=48.3

Q ss_pred             HHHHCCCCCEEEECCCCCCHHHHHHHHHHHC-CCCCCEEEE-ECCHHH----CCC---CCCEEEEEEECCCCCCCCCCHH
Q ss_conf             9862258848998188888889999998303-876767999-642131----256---7875677874166665300018
Q gi|254780724|r  244 QIIGRIRCNVLISGGTGSGKTTLLNCLTRYI-DKDERIVTC-EDTAEL----QLQ---QPHVVRLETRPPNIEGEGEITM  314 (483)
Q Consensus       244 ~~~v~~~~nilVsG~TGSGKTT~L~al~~~i-~~~~rivtI-ED~~El----~l~---~~~~v~~~~~~~~~e~~~~~t~  314 (483)
T Consensus       200 ~~~l~~g~VIaLVGvnGvGKTTTiAKLA~~l~~~gkkV~LVAaDTFRaAAiEQLk~~g~rlgVpV~~------~~dpa~l  273 (407)
T PRK12726        200 SFDLSNHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIV------ATSPAEL  273 (407)
T ss_pred             EEEECCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCEEEE------ECCHHHH
T ss_conf             0230369089998999897899999999999977991799970667788999999999997964998------1888999


Q ss_pred             HHHHH-HHHHCCCCEEEECCC
Q ss_conf             99998-752059988996575
Q gi|254780724|r  315 RDLVK-NCLRMRPERIILGEV  334 (483)
Q Consensus       315 ~~ll~-~aLR~~PD~IiVGEi  334 (483)
T Consensus       274 ~~av~~~a~~~~~DvVIIDTA  294 (407)
T PRK12726        274 EEAVQYMTYVNCVDHILIDTV  294 (407)
T ss_pred             HHHHHHHHHCCCCCEEEEECC
T ss_conf             999999986289998999699