HHsearch alignment for GI: 254780724 and conserved domain: PRK13537
>PRK13537 lipooligosaccharide transporter ATP-binding subunit; Provisional.
Probab=96.45 E-value=0.0087 Score=38.09 Aligned_cols=115 Identities=21% Similarity=0.212 Sum_probs=66.6
Q ss_pred HHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEE--CCH----HHC-----CCCC-CEEEEEEECCCC-----
Q ss_conf 98622588489981888888899999983038767679996--421----312-----5678-756778741666-----
Q gi|254780724|r 244 QIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCE--DTA----ELQ-----LQQP-HVVRLETRPPNI----- 306 (483)
Q Consensus 244 ~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIE--D~~----El~-----l~~~-~~v~~~~~~~~~----- 306 (483)
T Consensus 25 s~~V~~Gei~gllGpNGAGKTTli~~l~Gl~~p~sG~v~i~G~~i~~~~~~~r~~iG~~pq~~~l~~~ltv~e~l~~~~~ 104 (304)
T PRK13537 25 SFHVQPGECFGLLGPNGAGKTTTLKMLLGLTHPDAGTISLCGEPVPSRARHARQRVGVVPQFDNLDPDFTVRENLLVFGR 104 (304)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCHHHHHHCEEEEECCCCCCCCCCHHHHHHHHHH
T ss_conf 77886995999999989729999999977956897689999998875628887355999177656889899999999999
Q ss_pred -------------------------------CCCCCCHHHHHHHHHHHCCCCEEEECCC-C--CHHH----HHHHHHH-H
Q ss_conf -------------------------------6530001899998752059988996575-8--7999----9999998-7
Q gi|254780724|r 307 -------------------------------EGEGEITMRDLVKNCLRMRPERIILGEV-R--GPEV----LDLLQAM-N 347 (483)
Q Consensus 307 -------------------------------e~~~~~t~~~ll~~aLR~~PD~IiVGEi-R--g~Ea----~~~l~A~-~ 347 (483)
T Consensus 105 ~~g~~~~~~~~~~~~ll~~~~L~~~~~~~~~~lSgG~kqrl~ia~al~~~P~lliLDEPT~GLDp~~r~~i~~~i~~l~~ 184 (304)
T PRK13537 105 YFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLA 184 (304)
T ss_pred HCCCCHHHHHHHHHHHHHHCCCHHHHCCCHHHCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 72999999999999999977995685673667999999999999998379999999388667899999999999999996
Q ss_pred CCCCEEEHHHCC
Q ss_conf 397010200047
Q gi|254780724|r 348 TGHDGSMGTIHA 359 (483)
Q Consensus 348 TGH~G~ltTlHa 359 (483)
T Consensus 185 ~G~T-illttH~ 195 (304)
T PRK13537 185 RGKT-ILLTTHF 195 (304)
T ss_pred CCCE-EEEECCC
T ss_conf 8999-9998884