HHsearch alignment for GI: 254780724 and conserved domain: PRK13537

>PRK13537 lipooligosaccharide transporter ATP-binding subunit; Provisional.
Probab=96.45  E-value=0.0087  Score=38.09  Aligned_cols=115  Identities=21%  Similarity=0.212  Sum_probs=66.6

Q ss_pred             HHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEE--CCH----HHC-----CCCC-CEEEEEEECCCC-----
Q ss_conf             98622588489981888888899999983038767679996--421----312-----5678-756778741666-----
Q gi|254780724|r  244 QIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCE--DTA----ELQ-----LQQP-HVVRLETRPPNI-----  306 (483)
Q Consensus       244 ~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIE--D~~----El~-----l~~~-~~v~~~~~~~~~-----  306 (483)
T Consensus        25 s~~V~~Gei~gllGpNGAGKTTli~~l~Gl~~p~sG~v~i~G~~i~~~~~~~r~~iG~~pq~~~l~~~ltv~e~l~~~~~  104 (304)
T PRK13537         25 SFHVQPGECFGLLGPNGAGKTTTLKMLLGLTHPDAGTISLCGEPVPSRARHARQRVGVVPQFDNLDPDFTVRENLLVFGR  104 (304)
T ss_pred             EEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCHHHHHHCEEEEECCCCCCCCCCHHHHHHHHHH
T ss_conf             77886995999999989729999999977956897689999998875628887355999177656889899999999999


Q ss_pred             -------------------------------CCCCCCHHHHHHHHHHHCCCCEEEECCC-C--CHHH----HHHHHHH-H
Q ss_conf             -------------------------------6530001899998752059988996575-8--7999----9999998-7
Q gi|254780724|r  307 -------------------------------EGEGEITMRDLVKNCLRMRPERIILGEV-R--GPEV----LDLLQAM-N  347 (483)
Q Consensus       307 -------------------------------e~~~~~t~~~ll~~aLR~~PD~IiVGEi-R--g~Ea----~~~l~A~-~  347 (483)
T Consensus       105 ~~g~~~~~~~~~~~~ll~~~~L~~~~~~~~~~lSgG~kqrl~ia~al~~~P~lliLDEPT~GLDp~~r~~i~~~i~~l~~  184 (304)
T PRK13537        105 YFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLA  184 (304)
T ss_pred             HCCCCHHHHHHHHHHHHHHCCCHHHHCCCHHHCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH
T ss_conf             72999999999999999977995685673667999999999999998379999999388667899999999999999996


Q ss_pred             CCCCEEEHHHCC
Q ss_conf             397010200047
Q gi|254780724|r  348 TGHDGSMGTIHA  359 (483)
Q Consensus       348 TGH~G~ltTlHa  359 (483)
T Consensus       185 ~G~T-illttH~  195 (304)
T PRK13537        185 RGKT-ILLTTHF  195 (304)
T ss_pred             CCCE-EEEECCC
T ss_conf             8999-9998884