HHsearch alignment for GI: 254780724 and conserved domain: PRK13549
>PRK13549 xylose transporter ATP-binding subunit; Provisional.
Probab=95.59 E-value=0.017 Score=35.98 Aligned_cols=161 Identities=14% Similarity=0.175 Sum_probs=62.8
Q ss_pred HHCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCEEEEECCCCEEEEECCEEEECC-CCCCCHHHHHHHHHHHHH
Q ss_conf 7418778967899999999998856563358858833217998569918998278389717-620798999999999999
Q gi|254780724|r 99 SVKKITMSLDEQLDLFEDLCNDILGYGPLQPLIARDDIADIMVNGSNKVFIEVNGKTVETG-INFRDNEQLLSVCQRIVN 177 (483)
Q Consensus 99 ~~~~~~~~~~~~~~l~~~i~~e~~glGpL~~ll~D~~VsdI~ing~~~I~ve~~G~~~~~~-~~f~~~~~l~~~i~rla~ 177 (483)
T Consensus 168 DEPt~~LD~~~~~~l~~-~l~~l~~~g~-til~isH~l~~v~-~~aDrv~vl~~G~iv~~~~~~~~~~~~~---~~~--- 238 (513)
T PRK13549 168 DEPTASLTESETAILLD-IIRDLKQHGI-ACIYISHKLNEVK-AISDTICVIRDGRHIGTRPAAGMSEDDI---ITM--- 238 (513)
T ss_pred CCCCCCCCHHHHHHHHH-HHHHHHHCCC-EEEEEECCHHHHH-CCCCEEEECCCCCEEEECCHHHCCHHHH---HHH---
T ss_conf 66757888577799999-9999875596-7999945714303-0098740448985885355375799999---987---
Q ss_pred HHCCCCCCC---------CCEEEEEECCCCEEEEECCC----CCCCCCEEEEEECCCCCCCHHHHHHCCCCCHHHHHHHH
Q ss_conf 809812433---------87787982376203453155----35788168884057654667888650699889999989
Q gi|254780724|r 178 QVGRRVDES---------SPICDARLLDGSRVNVIIPP----LALDGPTLTIRKFKKDKLTLDHLVSFGAVTAEGARLLQ 244 (483)
Q Consensus 178 ~~g~~i~~~---------~P~~d~~lpdg~Ri~~~~~p----~s~~G~~i~IRk~~~~~~~l~~l~~~g~~~~~~~~~l~ 244 (483)
T Consensus 239 ~~g~~~~~~~p~~~~~~~~~~l~~~--~---l~~~~~~~~~~~~l~~vsf~v~~--GEi~gi~--G~nGsGKsTLl~~L~ 309 (513)
T PRK13549 239 MVGRELTALYPREPHDIGDEILRVR--N---LTAWDPVNPHIKRVDDVSFSLRR--GEILGIA--GLVGAGRTELVQCLF 309 (513)
T ss_pred HHCHHHHHHCCCCCCCCCCCEEEEE--E---EEEECCCCCCCEEEECCEEEECC--CCEEEEE--CCCCCCHHHHHHHHH
T ss_conf 4040135407777788787158996--4---46642688874365233578868--8489974--798865899999983
Q ss_pred HHHC--CCCCEEEECCCCCCHHH--HHHHHHHHCCCC
Q ss_conf 8622--58848998188888889--999998303876
Q gi|254780724|r 245 IIGR--IRCNVLISGGTGSGKTT--LLNCLTRYIDKD 277 (483)
Q Consensus 245 ~~v~--~~~nilVsG~TGSGKTT--~L~al~~~i~~~ 277 (483)
T Consensus 310 Gl~~~~~~G~i~~~G~~i~~~~~~~~~~~~i~~v~qd 346 (513)
T PRK13549 310 GAYPGRWEGEIFIDGKPVKIRNPQQAIRQGIAMVPED 346 (513)
T ss_pred CCCCCCCCEEEEECCEECCCCCHHHHHHHCCCCCCCC
T ss_conf 8988897439999988768689999997177634510