HHsearch alignment for GI: 254780724 and conserved domain: PRK13830
>PRK13830 conjugal transfer protein TrbE; Provisional.
Probab=97.09 E-value=0.00042 Score=47.28 Aligned_cols=38 Identities=32% Similarity=0.344 Sum_probs=28.0
Q ss_pred HHCCCCCEEEECCCCCCHHHHHHHHHHHCCC--CCCEEEE
Q ss_conf 6225884899818888888999999830387--6767999
Q gi|254780724|r 246 IGRIRCNVLISGGTGSGKTTLLNCLTRYIDK--DERIVTC 283 (483)
Q Consensus 246 ~v~~~~nilVsG~TGSGKTT~L~al~~~i~~--~~rivtI 283 (483)
T Consensus 452 H~~dvGHtlIiGpTGsGKTvll~fl~aq~~ky~~~~vf~F 491 (818)
T PRK13830 452 HVDDVGHTLIFGPTGSGKSTLLALIAAQFRRYAGAQIFAF 491 (818)
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 8898650589899999889999999999864279838997