HHsearch alignment for GI: 254780724 and conserved domain: PRK13853
>PRK13853 type IV secretion system protein VirB4; Provisional.
Probab=97.13 E-value=0.00065 Score=45.95 Aligned_cols=37 Identities=27% Similarity=0.301 Sum_probs=26.9
Q ss_pred HCCCCCEEEECCCCCCHHHHHHHHHH----H-CCCCCCEEEE
Q ss_conf 22588489981888888899999983----0-3876767999
Q gi|254780724|r 247 GRIRCNVLISGGTGSGKTTLLNCLTR----Y-IDKDERIVTC 283 (483)
Q Consensus 247 v~~~~nilVsG~TGSGKTT~L~al~~----~-i~~~~rivtI 283 (483)
T Consensus 423 ~~d~GHt~I~G~TGsGKTtll~fL~aq~~ky~~~~~~~~~~f 464 (789)
T PRK13853 423 EHDVGMTAIFGPIGRGKTTLMTFILAMLEQSMVDRAGAVVFF 464 (789)
T ss_pred CCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEE
T ss_conf 788774488789999889999999999997422357708999