HHsearch alignment for GI: 254780724 and conserved domain: PRK13900
>PRK13900 type IV secretion system ATPase VirB11; Provisional.
Probab=100.00 E-value=0 Score=590.83 Aligned_cols=294 Identities=32% Similarity=0.537 Sum_probs=281.0
Q ss_pred CCCCHHHHCCCCCCEEEEECCCCEEEEECCEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCEEEEE
Q ss_conf 56335885883321799856991899827838971762079899999999999980981243387787982376203453
Q gi|254780724|r 124 YGPLQPLIARDDIADIMVNGSNKVFIEVNGKTVETGINFRDNEQLLSVCQRIVNQVGRRVDESSPICDARLLDGSRVNVI 203 (483)
Q Consensus 124 lGpL~~ll~D~~VsdI~ing~~~I~ve~~G~~~~~~~~f~~~~~l~~~i~rla~~~g~~i~~~~P~~d~~lpdg~Ri~~~ 203 (483)
T Consensus 12 LgPL~~ll~D~~V~EI~iN~~~~V~ve~~G~~~~~~~~~~~~~~l~~l~~~ia~~~~~~~~~~~P~l~a~Lp~G~Rv~~v 91 (332)
T PRK13900 12 LEPLKNIFAEDGVNEISINKPGEVWVEKRGDIRCEQIPELDLSHLKALGRLIAQATEQKISEEKPLLSATLPNGYRIQIV 91 (332)
T ss_pred HHHHHHHHCCCCCEEEEECCCCEEEEEECCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCEEEEE
T ss_conf 74389996099987999869997999989967980577599999999999999980996667896689991898468998
Q ss_pred CCCCCCCC-CEEEEEECCCCCCCHHHHHHCCCCCH---------------------HHHHHHHHHHCCCCCEEEECCCCC
Q ss_conf 15535788-16888405765466788865069988---------------------999998986225884899818888
Q gi|254780724|r 204 IPPLALDG-PTLTIRKFKKDKLTLDHLVSFGAVTA---------------------EGARLLQIIGRIRCNVLISGGTGS 261 (483)
Q Consensus 204 ~~p~s~~G-~~i~IRk~~~~~~~l~~l~~~g~~~~---------------------~~~~~l~~~v~~~~nilVsG~TGS 261 (483)
T Consensus 92 ~pp~~~~g~~~ltIRk~~~~~~tl~dl~~~G~~~~~~~~~~~~~~~~~l~~~~~~~~~~~fL~~aV~~r~NilI~G~TgS 171 (332)
T PRK13900 92 FPPACEIGQIIYSIRKPSGMQLTLDDYEKMGAFDETATESLVDEDDVILNELLAEKKIKEFLEHAVISKKNIIISGGTST 171 (332)
T ss_pred ECCCCCCCCCEEEEECCCCCCCCHHHHHHCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCC
T ss_conf 37831599847999788888899999986498665554201341567788764105799999999864871999888898
Q ss_pred CHHHHHHHHHHHCCCCCCEEEEECCHHHCCC-CCCEEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCHHHH
Q ss_conf 8889999998303876767999642131256-787567787416666530001899998752059988996575879999
Q gi|254780724|r 262 GKTTLLNCLTRYIDKDERIVTCEDTAELQLQ-QPHVVRLETRPPNIEGEGEITMRDLVKNCLRMRPERIILGEVRGPEVL 340 (483)
Q Consensus 262 GKTT~L~al~~~i~~~~rivtIED~~El~l~-~~~~v~~~~~~~~~e~~~~~t~~~ll~~aLR~~PD~IiVGEiRg~Ea~ 340 (483)
T Consensus 172 GKTTll~aL~~~ip~~eRiitIEDt~EL~l~~~pn~v~l~~~~~-~~g~~~vt~~~Ll~~aLR~rPDRIivGEvRG~EA~ 250 (332)
T PRK13900 172 GKTTFTNAALREIPAIERLITVEDAREIVLSSHPNRVHLLASKG-GQGRAKVTTQDLIEACLRLRPDRIIVGELRGAEAF 250 (332)
T ss_pred CHHHHHHHHHHCCCCCCCEEEECCCHHHCCCCCCCEEEEEECCC-CCCCCEECHHHHHHHHHCCCCCEEEECCCCHHHHH
T ss_conf 89999999983589535356631406635666888899997168-88866086999999975689975844555719999
Q ss_pred HHHHHHHCCCCEEEHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCEEEEEEECCCCCEEEEEEEEEEEE
Q ss_conf 999998739701020004788888999999755304679998999999974235889998769998789999999841
Q gi|254780724|r 341 DLLQAMNTGHDGSMGTIHANNARESFGRMEAMIAMGGFTLPSQMVREIITSSLDVIVQTQRLRDGSRRITNICEIVGM 418 (483)
Q Consensus 341 ~~l~A~~TGH~G~ltTlHa~s~~~ai~RL~~m~~~~~~~~~~~~~~~~ia~avd~iV~~~r~~dG~Rrv~~I~Ev~g~ 418 (483)
T Consensus 251 ~~l~A~nTGH~Gs~tTiHA~sa~~a~~Rl~~l~~~~~~~~~~~~i~~~i~~aiDvVV~~~r~~~g~R~V~eI~~~~~~ 328 (332)
T PRK13900 251 SFLRAINTGHPGSISTLHADSPAMAIEQLKLMVMQAGLGMPPDQIKKYILNVVDIVVQLKRGSGGKRYVSEIYFTKNK 328 (332)
T ss_pred HHHHHHHCCCCCCEECCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCEEEEEEECCCCCEEEEEEEECCCC
T ss_conf 999999769997114627899999999999999851689899999999998589999998849998899999986786