HHsearch alignment for GI: 254780724 and conserved domain: PRK13900

>PRK13900 type IV secretion system ATPase VirB11; Provisional.
Probab=100.00  E-value=0  Score=590.83  Aligned_cols=294  Identities=32%  Similarity=0.537  Sum_probs=281.0

Q ss_pred             CCCCHHHHCCCCCCEEEEECCCCEEEEECCEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCEEEEE
Q ss_conf             56335885883321799856991899827838971762079899999999999980981243387787982376203453
Q gi|254780724|r  124 YGPLQPLIARDDIADIMVNGSNKVFIEVNGKTVETGINFRDNEQLLSVCQRIVNQVGRRVDESSPICDARLLDGSRVNVI  203 (483)
Q Consensus       124 lGpL~~ll~D~~VsdI~ing~~~I~ve~~G~~~~~~~~f~~~~~l~~~i~rla~~~g~~i~~~~P~~d~~lpdg~Ri~~~  203 (483)
T Consensus        12 LgPL~~ll~D~~V~EI~iN~~~~V~ve~~G~~~~~~~~~~~~~~l~~l~~~ia~~~~~~~~~~~P~l~a~Lp~G~Rv~~v   91 (332)
T PRK13900         12 LEPLKNIFAEDGVNEISINKPGEVWVEKRGDIRCEQIPELDLSHLKALGRLIAQATEQKISEEKPLLSATLPNGYRIQIV   91 (332)
T ss_pred             HHHHHHHHCCCCCEEEEECCCCEEEEEECCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCEEEEE
T ss_conf             74389996099987999869997999989967980577599999999999999980996667896689991898468998


Q ss_pred             CCCCCCCC-CEEEEEECCCCCCCHHHHHHCCCCCH---------------------HHHHHHHHHHCCCCCEEEECCCCC
Q ss_conf             15535788-16888405765466788865069988---------------------999998986225884899818888
Q gi|254780724|r  204 IPPLALDG-PTLTIRKFKKDKLTLDHLVSFGAVTA---------------------EGARLLQIIGRIRCNVLISGGTGS  261 (483)
Q Consensus       204 ~~p~s~~G-~~i~IRk~~~~~~~l~~l~~~g~~~~---------------------~~~~~l~~~v~~~~nilVsG~TGS  261 (483)
T Consensus        92 ~pp~~~~g~~~ltIRk~~~~~~tl~dl~~~G~~~~~~~~~~~~~~~~~l~~~~~~~~~~~fL~~aV~~r~NilI~G~TgS  171 (332)
T PRK13900         92 FPPACEIGQIIYSIRKPSGMQLTLDDYEKMGAFDETATESLVDEDDVILNELLAEKKIKEFLEHAVISKKNIIISGGTST  171 (332)
T ss_pred             ECCCCCCCCCEEEEECCCCCCCCHHHHHHCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCC
T ss_conf             37831599847999788888899999986498665554201341567788764105799999999864871999888898


Q ss_pred             CHHHHHHHHHHHCCCCCCEEEEECCHHHCCC-CCCEEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCHHHH
Q ss_conf             8889999998303876767999642131256-787567787416666530001899998752059988996575879999
Q gi|254780724|r  262 GKTTLLNCLTRYIDKDERIVTCEDTAELQLQ-QPHVVRLETRPPNIEGEGEITMRDLVKNCLRMRPERIILGEVRGPEVL  340 (483)
Q Consensus       262 GKTT~L~al~~~i~~~~rivtIED~~El~l~-~~~~v~~~~~~~~~e~~~~~t~~~ll~~aLR~~PD~IiVGEiRg~Ea~  340 (483)
T Consensus       172 GKTTll~aL~~~ip~~eRiitIEDt~EL~l~~~pn~v~l~~~~~-~~g~~~vt~~~Ll~~aLR~rPDRIivGEvRG~EA~  250 (332)
T PRK13900        172 GKTTFTNAALREIPAIERLITVEDAREIVLSSHPNRVHLLASKG-GQGRAKVTTQDLIEACLRLRPDRIIVGELRGAEAF  250 (332)
T ss_pred             CHHHHHHHHHHCCCCCCCEEEECCCHHHCCCCCCCEEEEEECCC-CCCCCEECHHHHHHHHHCCCCCEEEECCCCHHHHH
T ss_conf             89999999983589535356631406635666888899997168-88866086999999975689975844555719999


Q ss_pred             HHHHHHHCCCCEEEHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCEEEEEEECCCCCEEEEEEEEEEEE
Q ss_conf             999998739701020004788888999999755304679998999999974235889998769998789999999841
Q gi|254780724|r  341 DLLQAMNTGHDGSMGTIHANNARESFGRMEAMIAMGGFTLPSQMVREIITSSLDVIVQTQRLRDGSRRITNICEIVGM  418 (483)
Q Consensus       341 ~~l~A~~TGH~G~ltTlHa~s~~~ai~RL~~m~~~~~~~~~~~~~~~~ia~avd~iV~~~r~~dG~Rrv~~I~Ev~g~  418 (483)
T Consensus       251 ~~l~A~nTGH~Gs~tTiHA~sa~~a~~Rl~~l~~~~~~~~~~~~i~~~i~~aiDvVV~~~r~~~g~R~V~eI~~~~~~  328 (332)
T PRK13900        251 SFLRAINTGHPGSISTLHADSPAMAIEQLKLMVMQAGLGMPPDQIKKYILNVVDIVVQLKRGSGGKRYVSEIYFTKNK  328 (332)
T ss_pred             HHHHHHHCCCCCCEECCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCEEEEEEECCCCCEEEEEEEECCCC
T ss_conf             999999769997114627899999999999999851689899999999998589999998849998899999986786