HHsearch alignment for GI: 254780724 and conserved domain: TIGR01448
>TIGR01448 recD_rel helicase, RecD/TraA family; InterPro: IPR006345 These sequences represent a family similar to RecD, the exodeoxyribonuclease V alpha chain of IPR006344 from INTERPRO. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD. .
Probab=95.91 E-value=0.013 Score=36.88 Aligned_cols=39 Identities=26% Similarity=0.418 Sum_probs=29.0
Q ss_pred CCCHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHH
Q ss_conf 9988999998986225884899818888888999999830
Q gi|254780724|r 234 AVTAEGARLLQIIGRIRCNVLISGGTGSGKTTLLNCLTRY 273 (483)
Q Consensus 234 ~~~~~~~~~l~~~v~~~~nilVsG~TGSGKTT~L~al~~~ 273 (483)
T Consensus 350 ~l~~~Qk~AL~~~~-~~Kv~iLTGGPGTGKtT~t~~i~~~ 388 (769)
T TIGR01448 350 KLSEEQKEALKTAI-QDKVVILTGGPGTGKTTITKAIIEL 388 (769)
T ss_pred CHHHHHHHHHHHHH-CCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 70688999999986-0948998577888616899999999