HHsearch alignment for GI: 254780724 and conserved domain: TIGR01846
>TIGR01846 type_I_sec_HlyB type I secretion system ATPase; InterPro: IPR010132 Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This entry contains one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N terminus, but rather carry signals located toward the extreme C terminus to direct type I secretion.; GO: 0005524 ATP binding, 0008565 protein transporter activity, 0015031 protein transport, 0016021 integral to membrane.
Probab=96.25 E-value=0.0057 Score=39.35 Aligned_cols=48 Identities=27% Similarity=0.297 Sum_probs=38.6
Q ss_pred CCHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHH-HCCCCCCEEE
Q ss_conf 98899999898622588489981888888899999983-0387676799
Q gi|254780724|r 235 VTAEGARLLQIIGRIRCNVLISGGTGSGKTTLLNCLTR-YIDKDERIVT 282 (483)
Q Consensus 235 ~~~~~~~~l~~~v~~~~nilVsG~TGSGKTT~L~al~~-~i~~~~rivt 282 (483)
T Consensus 476 D~PeVL~nl~L~I~~Ge~IGIvGpSGSGKSTLTKL~QRLYtP~~GqVLV 524 (703)
T TIGR01846 476 DSPEVLSNLSLDIKPGEVIGIVGPSGSGKSTLTKLLQRLYTPEHGQVLV 524 (703)
T ss_pred CCCHHHHCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCCEEEE
T ss_conf 8717873268765786579987278986789999988614888874777