HHsearch alignment for GI: 254780724 and conserved domain: TIGR01967
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA; InterPro: IPR010222 This entry represents HrpA, one of two related but uncharacterised DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterised, is about 800 amino acids long. Related characterised eukaryotic proteins are RNA helicases associated with pre-mRNA processing.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity.
Probab=96.92 E-value=0.00054 Score=46.52 Aligned_cols=41 Identities=17% Similarity=0.144 Sum_probs=15.4
Q ss_pred CCCCCCEEEEEECCCCCCCHHHH--HHCCCCCHHHHHHHHHHH
Q ss_conf 35788168884057654667888--650699889999989862
Q gi|254780724|r 207 LALDGPTLTIRKFKKDKLTLDHL--VSFGAVTAEGARLLQIIG 247 (483)
Q Consensus 207 ~s~~G~~i~IRk~~~~~~~l~~l--~~~g~~~~~~~~~l~~~v 247 (483)
T Consensus 881 ~~~DGVTV~IP~PlLnq~~~~~F~WLVPGlr~ek~vaLik~LP 923 (1320)
T TIGR01967 881 HSDDGVTVHIPVPLLNQLDEEDFDWLVPGLREEKVVALIKSLP 923 (1320)
T ss_pred CCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCC
T ss_conf 7977716885554578988887401104578999999987357