HHsearch alignment for GI: 254780724 and conserved domain: TIGR02858
>TIGR02858 spore_III_AA stage III sporulation protein AA; InterPro: IPR014217 Proteins in this entry include the stage III sporulation protein AA that is encoded by one of several genes in the spoIIIA locus. This protein is only found in species that are capable of endospore formation..
Probab=99.42 E-value=2.6e-11 Score=97.61 Aligned_cols=236 Identities=20% Similarity=0.217 Sum_probs=156.9
Q ss_pred CCEEEEECCEEEECC--CCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCEEEEECCCCCCCCCEEEEEECCCC
Q ss_conf 918998278389717--620798999999999999809812433877879823762034531553578816888405765
Q gi|254780724|r 145 NKVFIEVNGKTVETG--INFRDNEQLLSVCQRIVNQVGRRVDESSPICDARLLDGSRVNVIIPPLALDGPTLTIRKFKKD 222 (483)
Q Consensus 145 ~~I~ve~~G~~~~~~--~~f~~~~~l~~~i~rla~~~g~~i~~~~P~~d~~lpdg~Ri~~~~~p~s~~G~~i~IRk~~~~ 222 (483)
T Consensus 18 ~~~~~~~~Gelt~~~~~~y~~~~eD~~~~~~~~S~ySlYA~EeElk~GYITi~GGHRVGlaG~~V~E~~~vk~ik~v~S~ 97 (282)
T TIGR02858 18 EEVFVTTDGELTAESDSDYIPTVEDVEAILQLISQYSLYAFEEELKQGYITIEGGHRVGLAGRCVLENGKVKTIKNVASL 97 (282)
T ss_pred CCEEECCCCEEEECCCCCCEECHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCEEEEEECEEEEECCCEEEEECCCCC
T ss_conf 52787588203205887713028889999998763124565576507607854672675303799507846451054642
Q ss_pred CCCHHHHHHCCCCCHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHCC--------CCCCEEEEECCHHHC----
Q ss_conf 46678886506998899999898622588489981888888899999983038--------767679996421312----
Q gi|254780724|r 223 KLTLDHLVSFGAVTAEGARLLQIIGRIRCNVLISGGTGSGKTTLLNCLTRYID--------KDERIVTCEDTAELQ---- 290 (483)
Q Consensus 223 ~~~l~~l~~~g~~~~~~~~~l~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~--------~~~rivtIED~~El~---- 290 (483)
T Consensus 98 NiRIaRE~~--G~A~~~~~yL~d~~~~~~NTLiIsPPq~GKTTlLRDlaR~~StG~~~~~~~g~KVgivDERSEIAgC~~ 175 (282)
T TIGR02858 98 NIRIAREVL--GAADKILPYLVDRNGRVLNTLIISPPQCGKTTLLRDLARILSTGISKLGLKGKKVGIVDERSEIAGCVN 175 (282)
T ss_pred CEEEEEECC--CCCHHHHHHHHCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCEEEEECCHHHHHHCC
T ss_conf 133020005--775666887730589446788886889885104888988860785424689974699843246565458
Q ss_pred -CCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHH-CCCCEEEECCCCCH-HHHHHHHHHHCCCCEEEHHHCCCCHHHHHH
Q ss_conf -567875677874166665300018999987520-59988996575879-999999998739701020004788888999
Q gi|254780724|r 291 -LQQPHVVRLETRPPNIEGEGEITMRDLVKNCLR-MRPERIILGEVRGP-EVLDLLQAMNTGHDGSMGTIHANNARESFG 367 (483)
Q Consensus 291 -l~~~~~v~~~~~~~~~e~~~~~t~~~ll~~aLR-~~PD~IiVGEiRg~-Ea~~~l~A~~TGH~G~ltTlHa~s~~~ai~ 367 (483)
T Consensus 176 GvPQ~~vG~-RtDVLD-----~CPKAEGmMM~iRSMSP~Viv~DEIGr~ED~~Al~eA~naGV~-~I~TaHg~~~~Dl~k 248 (282)
T TIGR02858 176 GVPQLDVGI-RTDVLD-----GCPKAEGMMMLIRSMSPDVIVVDEIGREEDVEALLEALNAGVS-VIATAHGRDLEDLKK 248 (282)
T ss_pred CCCCCCCCC-CEEECC-----CCCHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHCCCCE-EEEEECCCCHHHHHC
T ss_conf 824144676-067517-----8853789999997069857998148895338999998616756-887640488126650
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHCCEEEEEEEC
Q ss_conf 99975530467999899999997423588999876
Q gi|254780724|r 368 RMEAMIAMGGFTLPSQMVREIITSSLDVIVQTQRL 402 (483)
Q Consensus 368 RL~~m~~~~~~~~~~~~~~~~ia~avd~iV~~~r~ 402 (483)
T Consensus 249 RP~f----------k~l~e---~~~Fer~v~Ls~~ 270 (282)
T TIGR02858 249 RPVF----------KELLE---QKAFERYVVLSRR 270 (282)
T ss_pred CHHH----------HHHHH---HCCCEEEEEECCC
T ss_conf 7667----------99997---2431489983688