HHsearch alignment for GI: 254780724 and conserved domain: TIGR02858

>TIGR02858 spore_III_AA stage III sporulation protein AA; InterPro: IPR014217 Proteins in this entry include the stage III sporulation protein AA that is encoded by one of several genes in the spoIIIA locus. This protein is only found in species that are capable of endospore formation..
Probab=99.42  E-value=2.6e-11  Score=97.61  Aligned_cols=236  Identities=20%  Similarity=0.217  Sum_probs=156.9

Q ss_pred             CCEEEEECCEEEECC--CCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCEEEEECCCCCCCCCEEEEEECCCC
Q ss_conf             918998278389717--620798999999999999809812433877879823762034531553578816888405765
Q gi|254780724|r  145 NKVFIEVNGKTVETG--INFRDNEQLLSVCQRIVNQVGRRVDESSPICDARLLDGSRVNVIIPPLALDGPTLTIRKFKKD  222 (483)
Q Consensus       145 ~~I~ve~~G~~~~~~--~~f~~~~~l~~~i~rla~~~g~~i~~~~P~~d~~lpdg~Ri~~~~~p~s~~G~~i~IRk~~~~  222 (483)
T Consensus        18 ~~~~~~~~Gelt~~~~~~y~~~~eD~~~~~~~~S~ySlYA~EeElk~GYITi~GGHRVGlaG~~V~E~~~vk~ik~v~S~   97 (282)
T TIGR02858        18 EEVFVTTDGELTAESDSDYIPTVEDVEAILQLISQYSLYAFEEELKQGYITIEGGHRVGLAGRCVLENGKVKTIKNVASL   97 (282)
T ss_pred             CCEEECCCCEEEECCCCCCEECHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCEEEEEECEEEEECCCEEEEECCCCC
T ss_conf             52787588203205887713028889999998763124565576507607854672675303799507846451054642


Q ss_pred             CCCHHHHHHCCCCCHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHCC--------CCCCEEEEECCHHHC----
Q ss_conf             46678886506998899999898622588489981888888899999983038--------767679996421312----
Q gi|254780724|r  223 KLTLDHLVSFGAVTAEGARLLQIIGRIRCNVLISGGTGSGKTTLLNCLTRYID--------KDERIVTCEDTAELQ----  290 (483)
Q Consensus       223 ~~~l~~l~~~g~~~~~~~~~l~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~--------~~~rivtIED~~El~----  290 (483)
T Consensus        98 NiRIaRE~~--G~A~~~~~yL~d~~~~~~NTLiIsPPq~GKTTlLRDlaR~~StG~~~~~~~g~KVgivDERSEIAgC~~  175 (282)
T TIGR02858        98 NIRIAREVL--GAADKILPYLVDRNGRVLNTLIISPPQCGKTTLLRDLARILSTGISKLGLKGKKVGIVDERSEIAGCVN  175 (282)
T ss_pred             CEEEEEECC--CCCHHHHHHHHCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCEEEEECCHHHHHHCC
T ss_conf             133020005--775666887730589446788886889885104888988860785424689974699843246565458


Q ss_pred             -CCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHH-CCCCEEEECCCCCH-HHHHHHHHHHCCCCEEEHHHCCCCHHHHHH
Q ss_conf             -567875677874166665300018999987520-59988996575879-999999998739701020004788888999
Q gi|254780724|r  291 -LQQPHVVRLETRPPNIEGEGEITMRDLVKNCLR-MRPERIILGEVRGP-EVLDLLQAMNTGHDGSMGTIHANNARESFG  367 (483)
Q Consensus       291 -l~~~~~v~~~~~~~~~e~~~~~t~~~ll~~aLR-~~PD~IiVGEiRg~-Ea~~~l~A~~TGH~G~ltTlHa~s~~~ai~  367 (483)
T Consensus       176 GvPQ~~vG~-RtDVLD-----~CPKAEGmMM~iRSMSP~Viv~DEIGr~ED~~Al~eA~naGV~-~I~TaHg~~~~Dl~k  248 (282)
T TIGR02858       176 GVPQLDVGI-RTDVLD-----GCPKAEGMMMLIRSMSPDVIVVDEIGREEDVEALLEALNAGVS-VIATAHGRDLEDLKK  248 (282)
T ss_pred             CCCCCCCCC-CEEECC-----CCCHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHCCCCE-EEEEECCCCHHHHHC
T ss_conf             824144676-067517-----8853789999997069857998148895338999998616756-887640488126650


Q ss_pred             HHHHHHHHCCCCCCHHHHHHHHHHHCCEEEEEEEC
Q ss_conf             99975530467999899999997423588999876
Q gi|254780724|r  368 RMEAMIAMGGFTLPSQMVREIITSSLDVIVQTQRL  402 (483)
Q Consensus       368 RL~~m~~~~~~~~~~~~~~~~ia~avd~iV~~~r~  402 (483)
T Consensus       249 RP~f----------k~l~e---~~~Fer~v~Ls~~  270 (282)
T TIGR02858       249 RPVF----------KELLE---QKAFERYVVLSRR  270 (282)
T ss_pred             CHHH----------HHHHH---HCCCEEEEEECCC
T ss_conf             7667----------99997---2431489983688