HHsearch alignment for GI: 254780724 and conserved domain: TIGR03167
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=96.39 E-value=0.005 Score=39.78 Aligned_cols=119 Identities=22% Similarity=0.228 Sum_probs=63.2
Q ss_pred HHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEECCHHHCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHH
Q ss_conf 98986225884899818888888999999830387676799964213125678756778741666653000189999875
Q gi|254780724|r 242 LLQIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCEDTAELQLQQPHVVRLETRPPNIEGEGEITMRDLVKNC 321 (483)
Q Consensus 242 ~l~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED~~El~l~~~~~v~~~~~~~~~e~~~~~t~~~ll~~a 321 (483)
T Consensus 119 ~l~~~~~~~~~~vl~G~TG~GKT~iL~~L~~~---G~qviDLEglAn----HRGS~FG--~~~~~~QPsQk~FEn~l~~~ 189 (311)
T TIGR03167 119 QLEELPQPFPLIVLGGMTGSGKTELLHALANA---GAQVLDLEGLAN----HRGSSFG--ALGLGPQPSQKRFENALAEA 189 (311)
T ss_pred HHHHCCCCCCEEEEECCCCCCHHHHHHHHHHC---CCCCCCHHHHHH----CCCCCCC--CCCCCCCCCHHHHHHHHHHH
T ss_conf 99714546876998788887789999999976---997425899863----1465346--88889997899999999999
Q ss_pred H-HCCCCE--EEECCCC--CHHH--HHHHHHHHCCCCEEEHHHCCCCHHHHHHHHHHHH
Q ss_conf 2-059988--9965758--7999--9999998739701020004788888999999755
Q gi|254780724|r 322 L-RMRPER--IILGEVR--GPEV--LDLLQAMNTGHDGSMGTIHANNARESFGRMEAMI 373 (483)
Q Consensus 322 L-R~~PD~--IiVGEiR--g~Ea--~~~l~A~~TGH~G~ltTlHa~s~~~ai~RL~~m~ 373 (483)
T Consensus 190 l~~~~~~~~i~vE~ES~~IG~~~iP~~l~~~M~~a~~-i~--i~~-~le~Rv~~l~~~Y 244 (311)
T TIGR03167 190 LRRLDPGRPIFVEDESRRIGRVALPDALFEAMRAAPL-VE--LEA-SLEERVERLVEEY 244 (311)
T ss_pred HHCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHCCCE-EE--EEC-CHHHHHHHHHHHH
T ss_conf 9817888956996033130571389999999851998-99--989-9999999999986