HHsearch alignment for GI: 254780724 and conserved domain: TIGR03269
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=95.66 E-value=0.019 Score=35.80 Aligned_cols=140 Identities=14% Similarity=0.149 Sum_probs=58.3
Q ss_pred HCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCEEEEEC--------CCCEEEEECCEEEECCCCCCCHHHH-HH
Q ss_conf 41877896789999999999885656335885883321799856--------9918998278389717620798999-99
Q gi|254780724|r 100 VKKITMSLDEQLDLFEDLCNDILGYGPLQPLIARDDIADIMVNG--------SNKVFIEVNGKTVETGINFRDNEQL-LS 170 (483)
Q Consensus 100 ~~~~~~~~~~~~~l~~~i~~e~~glGpL~~ll~D~~VsdI~ing--------~~~I~ve~~G~~~~~~~~f~~~~~l-~~ 170 (483)
T Consensus 194 EPTa~LD~~~~~~l~~~l~~l~----------~~~g~tii~isH~l~~~~~~~Drv~vl~~G~iv~~g~----~~ev~~~ 259 (520)
T TIGR03269 194 EPTGTLDPQTAKLVHNALEEAV----------KASGISMVLTSHWPEVIEDLSDKAIWLENGEIKEEGT----PDEVVAV 259 (520)
T ss_pred CCCCCCCHHHHHHHHHHHHHHH----------HHHCCEEEEECCCHHHHHHHCCEEEEEECCEEEEEEC----HHHHHHH
T ss_conf 7633579999999999999999----------9839659997486999998699999998998999938----8999999
Q ss_pred HHHHHHH-HHCCCCCCCCCEEEEEECCCCEEEEECCC-CCCCCCEEEEEECCCCCCCHHHHHHCCCCCHHHHHHHHHHHC
Q ss_conf 9999999-80981243387787982376203453155-357881688840576546678886506998899999898622
Q gi|254780724|r 171 VCQRIVN-QVGRRVDESSPICDARLLDGSRVNVIIPP-LALDGPTLTIRKFKKDKLTLDHLVSFGAVTAEGARLLQIIGR 248 (483)
Q Consensus 171 ~i~rla~-~~g~~i~~~~P~~d~~lpdg~Ri~~~~~p-~s~~G~~i~IRk~~~~~~~l~~l~~~g~~~~~~~~~l~~~v~ 248 (483)
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~~g~~~al~~vs~~v~~--GEi~gi~--G~nGsGKsTL~k~l~Gl~~ 335 (520)
T TIGR03269 260 FMEGVSEVEKECEVEVGEPIIKVRNVSKRYISVDRGVVKAVDNVSLEVKE--GEIFGIV--GTSGAGKTTLSKIIAGVLE 335 (520)
T ss_pred HHHHCCCCCCCCCCCCCCCEEEEECCEEEEECCCCCCEEEEECEEEEECC--CCEEEEE--CCCCCCHHHHHHHHHCCCC
T ss_conf 98646434555656789963899776666452678862465120689728--9689998--7888878999999948878
Q ss_pred -CCCCEEEEC
Q ss_conf -588489981
Q gi|254780724|r 249 -IRCNVLISG 257 (483)
Q Consensus 249 -~~~nilVsG 257 (483)
T Consensus 336 p~~G~V~~~~ 345 (520)
T TIGR03269 336 PTSGEVNVRV 345 (520)
T ss_pred CCCCEEEEEC
T ss_conf 9874799973